BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005454
         (696 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/696 (70%), Positives = 579/696 (83%), Gaps = 1/696 (0%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           MK   +LR+AID LYSRG  A  E+YT+L+L C R NDV  AKRLQ+HMDL+ Y+P  TF
Sbjct: 1   MKPTPRLREAIDALYSRG-TANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTF 59

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L NRLLH YAKSG L  ARDLFDKM  RD+ SWNA+LSA+++SG+V+DLRA+FD+M + D
Sbjct: 60  LQNRLLHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHD 119

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +VSYNT IAGF+  G S +AL+ F RMQ++ FE TDYTHVS L+AC+QLLD++RGKQIHG
Sbjct: 120 AVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHG 179

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +IV  +LG +VFV NALT+MYAK G +D+ARWLFDRM N+N+VSWN MISGYL+NGQP+ 
Sbjct: 180 RIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPET 239

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           C  LF EMQ  GL PD+VT+SNIL A FQ G ID+A + F  IKEKD VCWTTM+VG  Q
Sbjct: 240 CTKLFCEMQSSGLMPDQVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQ 299

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NGKEEDAL+LF EML E+VRPD F+ISSVVSSCA+LASL  GQ VHGKAV+ GVD DLLV
Sbjct: 300 NGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLV 359

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+DMY KCG T DAW VF  M TRNV+SWNSMI GYAQNG+DLEALALY+++L ENL
Sbjct: 360 SSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENL 419

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD+ TFV VLSAC+HA L ERGQ +F SIS +HG+ P+ DHY+CMINLLGR+  +DKAV
Sbjct: 420 KPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAV 479

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLIKS+  +PN LIWSTLLSVC +  D+ +GEMAARHLFEL+P NAGPYIMLSN+YAACG
Sbjct: 480 DLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACG 539

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DVA++RS MK+  +KKFAAYSWIEIDN+VHKFV+EDRTH ETE IYEEL++LIKKLQ
Sbjct: 540 RWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQ 599

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           E+GF+P+T LVLHD  EEEK  SICYHSEKLALA+ LIKKPHG TPIRIMKNIRVCGDCH
Sbjct: 600 ESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCH 659

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +FMKF S II R IILRD NRFHHF+ G CSCKD+W
Sbjct: 660 VFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score = 1035 bits (2676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/696 (70%), Positives = 583/696 (83%), Gaps = 1/696 (0%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           M +K KLRQAIDTLY+ G  A+ E YT+L L+C R +DV+ AKRL+SHM L+ ++PN TF
Sbjct: 1   MNSKLKLRQAIDTLYTNG-PASHECYTRLALECFRASDVDQAKRLKSHMHLHLFKPNDTF 59

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +HNRLL+ YAKSG++ +AR LFD+M  RD  SWNA+LS +A+SG V+DLR +FD MP RD
Sbjct: 60  IHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRD 119

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           SVSYNT I+GFA  G    AL VF RMQK+  +PT+YTHVS LNAC QLLDLRRGKQIHG
Sbjct: 120 SVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHG 179

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +I++ NLGGNVFV NALTD+YA+ GEID+AR LFDRM  RN+V+WNLMISGYLKN QP+K
Sbjct: 180 RIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEK 239

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           CIDLF EMQ+  L PD+VT S++LGA  Q G ID+A ++F  I+EKD VCWT MIVG  Q
Sbjct: 240 CIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQ 299

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NGKEEDAL+LF+EML E+ RPD ++ISSVVSSCAKLASLYHGQVVHGKA ++GV+DDLLV
Sbjct: 300 NGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLV 359

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+DMYCKCGVT DAWT+F+ M TRNVVSWNSMI GYA NGQDLEAL+LY+ +L+ENL
Sbjct: 360 SSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENL 419

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPDS TFV VLSAC+HA L E G+ +F S+S  HG+ P+ DHYACM+NL GRS  +DKAV
Sbjct: 420 KPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAV 479

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI S+  +PNSLIW+T+LSVC MKGDIKHGEMAAR L EL P NA PYIMLSNMYAA G
Sbjct: 480 DLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARG 539

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DVASIRS MKSK+VKKF+AYSWIEIDN+VHKFV++DRTHP+ +II+ +L++LI+KLQ
Sbjct: 540 RWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQ 599

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAGFSPNT LVLHD  E+EK++SI YHSEKLALAY LIKKPHGVTPIRI+KNIR C DCH
Sbjct: 600 EAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTCADCH 659

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +FMKF S+I  R +ILRDSNRFHHFV G CSCKD W
Sbjct: 660 IFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/696 (66%), Positives = 571/696 (82%), Gaps = 1/696 (0%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           MKAK  LRQ++D L SR   AT EAYTQLVL+C R N++  AKRLQSHM+ + ++P  +F
Sbjct: 1   MKAKSMLRQSVDLLCSRS-TATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF 59

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LHN+LLH YAK GKL  A++LFDKM  RD  SWNALLSA+A+SGS+Q+L+A FD+MP RD
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           SVSYNT IAGF+     +E+L++F RMQ++ FEPT+YT VS LNA AQLLDLR GKQIHG
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHG 179

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            I+V N  GNVF+ NALTDMYAK GEI++ARWLFD +  +NLVSWNLMISGY KNGQP+K
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           CI L  +M+L G  PD+VT+S I+ A  Q GR+D+A R+F   KEKD VCWT M+VGY +
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+EEDAL+LFNEML E + PD +++SSVVSSCAKLASL+HGQ VHGK+++ G++++LLV
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSALIDMY KCG  DDA +VFN+MPTRNVVSWN+MI G AQNG D +AL L++ +LQ+  
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD+ TF+ +LSACLH +  E+GQ +FDSIS  HG+TP+LDHYACM+NLLGR+  +++AV
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            LIK++ H P+ LIWSTLLS+C+ KGDI + E+AARHLFEL+P  A PYIMLSNMYA+ G
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DVAS+R+ MKSKNVKKFA +SWIEIDN+VH+F SEDRTHPE+E IYE+L+ LI KLQ
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           E GF+PNT LVLHD  E+EK KSIC+HSEKLALA+ LIKKP+G++PIRI+KNIR+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            FMKFAS IIGR IILRDSNRFHHF  G CSC DNW
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/696 (66%), Positives = 571/696 (82%), Gaps = 1/696 (0%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           MKAK  LRQ++D L SR   AT EAYTQLVL+C R N++  AKRLQSHM+ + ++P  +F
Sbjct: 1   MKAKSMLRQSVDLLCSRS-TATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSF 59

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LHN+LLH YAK GKL  A++LFDKM  RDI SWNALLSA+A+SGS+Q+L+A FD+MP RD
Sbjct: 60  LHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRD 119

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           SVSYNT IAGF+     +E+L++F RMQ++ FEPT+YT VS LNA AQL DLR GKQIHG
Sbjct: 120 SVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHG 179

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            I+V N  GNVF+ NALTDMYAK GEI++ARWLFD +  +NLVSWNLMISGY KNGQP+K
Sbjct: 180 SIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEK 239

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           CI L  +M+L G  PD+VT+S I+ A  Q GR+D+A R+F   KEKD VCWT M+VGY +
Sbjct: 240 CIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAK 299

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+EEDAL+LFNEML E + PD +++SSVVSSCAKLASL+HGQ VHGK+++ G++++LLV
Sbjct: 300 NGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLV 359

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSALIDMY KCG  DDA +VFN+MPTRNVVSWN+MI G AQNG D +AL L++ +LQ+  
Sbjct: 360 SSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKF 419

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD+ TF+ +LSACLH +  E+GQ +FDSI+  HG+TP+LDHYACM+NLLGR+  +++AV
Sbjct: 420 KPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAV 479

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            LIK++ H P+ LIWSTLLS+C+ KGDI + E+AARHLFEL+P  A PYIMLSNMYA+ G
Sbjct: 480 ALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVPYIMLSNMYASMG 539

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DVAS+R+ MKSKNVKKFA +SWIEIDN+VH+F SEDRTHPE+E IYE+L+ LI KLQ
Sbjct: 540 RWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQ 599

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           E GF+PNT LVLHD  E+EK KSIC+HSEKLALA+ LIKKP+G++PIRI+KNIR+C DCH
Sbjct: 600 EEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGISPIRIIKNIRICNDCH 659

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            FMKFAS IIGR IILRDSNRFHHF  G CSC DNW
Sbjct: 660 EFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  986 bits (2549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/696 (66%), Positives = 564/696 (81%), Gaps = 3/696 (0%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           MK K KL QAID LYS G A+ ++ YT+LVL C R ND   AKRLQSHM+LN ++P  +F
Sbjct: 1   MKVKQKLHQAIDLLYSHGLASFDD-YTRLVLHCARANDFIQAKRLQSHMELNLFQPKDSF 59

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +HN+LLH YAK GKL  A+++FD M  RD+ SWN LLSA+A+ G V++L  +FD+MP RD
Sbjct: 60  IHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRD 119

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           SVSYNT IA FA+ G S +AL+V  RMQ+D F+PT Y+HV+AL AC+QLLDLR GKQIHG
Sbjct: 120 SVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHG 179

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +IVV +LG N FVRNA+TDMYAK G+IDKAR LFD M ++N+VSWNLMISGY+K G P +
Sbjct: 180 RIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNE 239

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           CI LF EMQL GL PD VTVSN+L A F+ GR+DDA  LF  + +KD +CWTTMIVGY Q
Sbjct: 240 CIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQ 299

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+EEDA +LF +ML  +V+PD ++ISS+VSSCAKLASLYHGQVVHGK VV+G+D+ +LV
Sbjct: 300 NGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGIDNSMLV 359

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+DMYCKCGVT DA  +F  MP RNV++WN+MI GYAQNGQ LEAL LY+++ QEN 
Sbjct: 360 SSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERMQQENF 419

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD+ TFV VLSAC++AD+ + GQ +FDSIS  HGI P+LDHYACMI LLGRS  VDKAV
Sbjct: 420 KPDNITFVGVLSACINADMVKEGQKYFDSISE-HGIAPTLDHYACMITLLGRSGSVDKAV 478

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +PH+PN  IWSTLLSVCA KGD+K+ E+AA HLFEL+P NAGPYIMLSN+YAACG
Sbjct: 479 DLIQGMPHEPNYRIWSTLLSVCA-KGDLKNAELAASHLFELDPRNAGPYIMLSNLYAACG 537

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DVA +RS MK KN KKFAAYSW+E+ NKVH+FVSED  HPE   IY EL++LI  LQ
Sbjct: 538 RWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRLISILQ 597

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G++P+T +VLH+  EEEK +SI YHSEKLALA+ LI+KP+GV PIRI+KNIRVC DCH
Sbjct: 598 QIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRVCDDCH 657

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +FMKFAS  I R II+RDSNRFHHF GG CSC DNW
Sbjct: 658 VFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693


>gi|255570455|ref|XP_002526186.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534490|gb|EEF36190.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 446

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 299/439 (68%), Positives = 367/439 (83%), Gaps = 3/439 (0%)

Query: 4   KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           K++LR+AID+LY+ G  AT E YT+L L+C R NDV+ AKRL++HMD + Y+P+ +FL N
Sbjct: 5   KYRLRRAIDSLYTHG-PATHECYTRLALECFRANDVDQAKRLETHMDFHLYQPSDSFLQN 63

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           RLLH YAK GK+ +AR LFDKM  RDI SWNA+LS +A++G V+DLR +FD MP RDSVS
Sbjct: 64  RLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAKAGLVEDLRVVFDDMPSRDSVS 123

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YNT I GFA  G + +A++ F RMQ + F+PT+YTHVS LNAC QLLDLR+GKQIHG+I+
Sbjct: 124 YNTVITGFAKNGRAGKAVEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRIL 183

Query: 184 VGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            GN LGGNVF+ NALTDMYAK  EID+ARWLFDR+ N+N+VSWN MISGYLKNGQ +  I
Sbjct: 184 TGNYLGGNVFIWNALTDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGI 243

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           +LF EMQ LGL PD+VTVSN+L A FQ+G ID A +LF   +EKD VCWTTMIVGYTQNG
Sbjct: 244 NLFHEMQGLGLKPDQVTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNG 303

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           KEE+AL+LFNEML E+VRPD ++ISSVVSSCAKLASL HGQV+HG A+++G+DDDLLVS+
Sbjct: 304 KEENALMLFNEML-ENVRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVST 362

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           +L+DMYCKCGVT DAW VF+MMP R+VVSWN+M+ GYA+NGQDLEALALY+K+ QEN++P
Sbjct: 363 SLVDMYCKCGVTSDAWVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRP 422

Query: 423 DSFTFVSVLSACLHADLFE 441
           D+ TFV VLSAC HA LF+
Sbjct: 423 DNITFVGVLSACNHAGLFD 441



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 187/379 (49%), Gaps = 52/379 (13%)

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           F++N L  +YAK G+I  AR+LFD+M+ R++ SWN M+S Y K                 
Sbjct: 60  FLQNRLLHLYAKLGKISHARYLFDKMSYRDIFSWNAMLSLYAK----------------- 102

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                              G ++D   +F  +  +D+V + T+I G+ +NG+   A+  F
Sbjct: 103 ------------------AGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKAVEAF 144

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDDLLVSSALIDMYC 369
             M +E  +P +++  SV+++C +L  L  G+ +HG+ ++ G  +  ++ + +AL DMY 
Sbjct: 145 VRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGR-ILTGNYLGGNVFIWNALTDMYA 203

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KC   D A  +F+ +  +N+VSWNSMI+GY +NGQ    + L+ ++    LKPD  T  +
Sbjct: 204 KCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQVTVSN 263

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDH--YACMINLLGRSSDVDKAVDLIKSLP 487
           VL A      F+ G  + D  + +   T   D   +  MI    ++   + A+ L   + 
Sbjct: 264 VLCA-----YFQSG--YIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALMLFNEML 316

Query: 488 H--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS--NMYAACGRWE 543
              +P+S   S+++S CA    + HG++    +  L  I+    +  S  +MY  CG   
Sbjct: 317 ENVRPDSYTISSVVSSCAKLASLIHGQV-IHGIALLMGIDDDLLVSTSLVDMYCKCGVTS 375

Query: 544 DVASIRSSMKSKNVKKFAA 562
           D   + S M +++V  + A
Sbjct: 376 DAWVVFSMMPARSVVSWNA 394



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 185/406 (45%), Gaps = 81/406 (19%)

Query: 139 EALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNA 196
           +A ++ + M    ++P+D +     L+  A+L     GK  H + +   +   ++F  NA
Sbjct: 41  QAKRLETHMDFHLYQPSDSFLQNRLLHLYAKL-----GKISHARYLFDKMSYRDIFSWNA 95

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           +  +YAK G ++  R +FD M +R+ VS+N +I+G+ KNG+  K ++ F  MQ  G  P 
Sbjct: 96  MLSLYAKAGLVEDLRVVFDDMPSRDSVSYNTVITGFAKNGRAGKAVEAFVRMQTEGFKPT 155

Query: 257 EVTVSNILGACFQ---------------TG---------------------RIDDAGRLF 280
           E T  ++L AC Q               TG                      ID A  LF
Sbjct: 156 EYTHVSVLNACTQLLDLRKGKQIHGRILTGNYLGGNVFIWNALTDMYAKCKEIDQARWLF 215

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  K+ V W +MI GY +NG+ E  + LF+EM    ++PD+ ++S+V+  CA      
Sbjct: 216 DRLANKNMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQVTVSNVL--CA------ 267

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
                                      Y + G  D A  +F+    ++ V W +MI GY 
Sbjct: 268 ---------------------------YFQSGYIDGATKLFSETREKDKVCWTTMIVGYT 300

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           QNG++  AL L++++L EN++PDS+T  SV+S+C        GQ     I+ + GI   L
Sbjct: 301 QNGKEENALMLFNEML-ENVRPDSYTISSVVSSCAKLASLIHGQV-IHGIALLMGIDDDL 358

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
                ++++  +      A  +   +P + + + W+ +L   A  G
Sbjct: 359 LVSTSLVDMYCKCGVTSDAWVVFSMMPAR-SVVSWNAMLGGYARNG 403



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 36/305 (11%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           K  +A   + + G   TE  +  ++  CT++ D+   K++   +    Y     F+ N L
Sbjct: 139 KAVEAFVRMQTEGFKPTEYTHVSVLNACTQLLDLRKGKQIHGRILTGNYLGGNVFIWNAL 198

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLS--------------------------- 98
              YAK  ++  AR LFD++  ++++SWN+++S                           
Sbjct: 199 TDMYAKCKEIDQARWLFDRLANKNMVSWNSMISGYLKNGQFEIGINLFHEMQGLGLKPDQ 258

Query: 99  --------AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
                   A+ +SG +     LF +   +D V + T I G+   G    AL +F+ M ++
Sbjct: 259 VTVSNVLCAYFQSGYIDGATKLFSETREKDKVCWTTMIVGYTQNGKEENALMLFNEMLEN 318

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
              P  YT  S +++CA+L  L  G+ IHG  ++  +  ++ V  +L DMY K G    A
Sbjct: 319 -VRPDSYTISSVVSSCAKLASLIHGQVIHGIALLMGIDDDLLVSTSLVDMYCKCGVTSDA 377

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
             +F  M  R++VSWN M+ GY +NGQ  + + L+++M    + PD +T   +L AC   
Sbjct: 378 WVVFSMMPARSVVSWNAMLGGYARNGQDLEALALYEKMFQENIRPDNITFVGVLSACNHA 437

Query: 271 GRIDD 275
           G  D+
Sbjct: 438 GLFDE 442


>gi|147799436|emb|CAN76870.1| hypothetical protein VITISV_012312 [Vitis vinifera]
          Length = 420

 Score =  589 bits (1519), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/375 (74%), Positives = 321/375 (85%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML E+VRPD F+ISSVVSSCA+LASL  GQ VHGKAV+ GVD DLLVSSAL+DMY KCG 
Sbjct: 1   MLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGE 60

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           T DAW VF  M TRNV+SWNSMI GYAQNG+DLEALALY+++L ENLKPD+ TFV VLSA
Sbjct: 61  TADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSA 120

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C+HA L ERGQ +F SIS +HG  P+ DHY+CMINLLGR+  +DKAVDLIKS+  +PN L
Sbjct: 121 CMHAGLVERGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCL 180

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IWSTLLSVC +  D+ +GEMAARHLFEL+P NAGPYIMLSN+YAACGRW+DVA++RS MK
Sbjct: 181 IWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMK 240

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
           +  +KKFAAYSWIEID++VHKFV+EDRTH ETE IY++L++LIKKLQE+GF+P+T LVLH
Sbjct: 241 NNKIKKFAAYSWIEIDSQVHKFVAEDRTHSETEQIYDKLNRLIKKLQESGFTPDTNLVLH 300

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  EEEK  SICYHSEKLALA+ LIKKPHG TPIRIMKNIRVCGDCH+FMKF S II R 
Sbjct: 301 DVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRP 360

Query: 674 IILRDSNRFHHFVGG 688
           IILRD NRFHHFV G
Sbjct: 361 IILRDINRFHHFVEG 375



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 154/320 (48%), Gaps = 25/320 (7%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  +   P ++T  S +++CA+L  L +G+ +HGK V+  +  ++ V +AL DMY+K GE
Sbjct: 1   MLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGE 60

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
              A  +F RM  RN++SWN MI GY +NG+  + + L++EM    L PD +T   +L A
Sbjct: 61  TADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSA 120

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           C   G ++     F+ I +          ++ MI    + G  + A+ L   M  E   P
Sbjct: 121 CMHAGLVERGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFE---P 177

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +    S+++S C     + +G++       L    +      L ++Y  CG   D   V 
Sbjct: 178 NCLIWSTLLSVCRINCDVNNGEMAARHLFELD-PHNAGPYIMLSNIYAACGRWKDVAAVR 236

Query: 382 NMMPTRNV-----VSW---NSMINGY-AQNGQDLEALALYDKL--LQENLKPDSFTFVSV 430
           ++M    +      SW   +S ++ + A++    E   +YDKL  L + L+   FT  + 
Sbjct: 237 SLMKNNKIKKFAAYSWIEIDSQVHKFVAEDRTHSETEQIYDKLNRLIKKLQESGFTPDTN 296

Query: 431 LSACLHADLFERGQNHFDSI 450
           L   LH D+ E  +  FDSI
Sbjct: 297 L--VLH-DVVE--EEKFDSI 311



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 21/207 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G   D   +F +M  R+ +S+N+ I G+A  G   EAL ++  M 
Sbjct: 44  DLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALYEEML 103

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR-NALTDMYAKGGEI 207
            +  +P + T V  L+AC     + RG+     I   +     F   + + ++  + G +
Sbjct: 104 HENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGXNPTFDHYSCMINLLGRAGYM 163

Query: 208 DKARWLFDRMN-NRNLVSWNLMISGY-----LKNGQPKKCIDLFQEMQLLGLNPDE---- 257
           DKA  L   M    N + W+ ++S       + NG+            L  L+P      
Sbjct: 164 DKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGE-------MAARHLFELDPHNAGPY 216

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIK 284
           + +SNI  AC   GR  D   +  ++K
Sbjct: 217 IMLSNIYAAC---GRWKDVAAVRSLMK 240


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/643 (40%), Positives = 390/643 (60%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+I   AL S + + GS+++ R +FD+MP RD VS+N  IAG++  G   EAL +FS MQ
Sbjct: 154 DVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQ 213

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +P   T VS +  CA LL L +GKQIH   +   +  +V V N L +MYAK G ++
Sbjct: 214 VNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVN 273

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  LF+RM  R++ SWN +I GY  N Q  + +  F  MQ+ G+ P+ +T+ ++L AC 
Sbjct: 274 TAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACA 333

Query: 268 -------------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTT 293
                              F++               G ++ A +LF  + +K+ V W  
Sbjct: 334 HLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNA 393

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I GY+Q+G   +AL LF EM ++ ++PD F+I SV+ +CA   +L  G+ +HG  +  G
Sbjct: 394 IISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSG 453

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + +++V + L+D+Y KCG  + A  +F  MP ++VVSW +MI  Y  +G   +ALAL+ 
Sbjct: 454 FESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFS 513

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ +   K D   F ++L+AC HA L ++G  +F  + + +G+ P L+HYAC+++LLGR+
Sbjct: 514 KMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRA 573

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A  +IK++  +P++ +W  LL  C +  +I+ GE AA+HLFEL+P NAG Y++LS
Sbjct: 574 GHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLS 633

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA   RWEDVA +R  MK K VKK    S + +   V  F+  DRTHP++E IY  L 
Sbjct: 634 NIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLE 693

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L +++++AG+ PNT L L D +EE K   +  HSEKLA+++ +I    G+ PIRIMKN+
Sbjct: 694 ILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGI-PIRIMKNL 752

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   KF S I+GR II+RD+NRFHH   G CSC D W
Sbjct: 753 RVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/439 (31%), Positives = 238/439 (54%), Gaps = 43/439 (9%)

Query: 113 FDKMPIRD-SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           F +  IR+ +V +   I G+   GF  +AL+++ +MQ+    P     +S + AC    D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L+ G+++H  I+      +V V  AL  MY K G ++ AR +FDRM  R++VSWN +I+G
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
           Y +NGQP + + LF EMQ+ G+ P+  T+ +++  C                        
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       + G ++ A +LF  +  +D   W  +I GY+ N +  +AL  FN M  
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             ++P+  ++ SV+ +CA L +L  GQ +HG A+  G + + +V +AL++MY KCG  + 
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A+ +F  MP +NVV+WN++I+GY+Q+G   EALAL+ ++  + +KPDSF  VSVL AC H
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 437 ADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
               E+G Q H  +I +  G   ++     ++++  +  +V+ A  L + +P + + + W
Sbjct: 436 FLALEQGKQIHGYTIRS--GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ-DVVSW 492

Query: 496 STLLSVCAMKGDIKHGEMA 514
           +T++    + G   HGE A
Sbjct: 493 TTMILAYGIHG---HGEDA 508



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 205/439 (46%), Gaps = 75/439 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  +E  K++  +   +  E +   + N L++ YAK G +  A  LF++MP+RD+ S
Sbjct: 231 CAHLLALEQGKQIHCYAIRSGIESDVLVV-NGLVNMYAKCGNVNTAHKLFERMPIRDVAS 289

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WNA++  ++ +    +  A F++M +R                                 
Sbjct: 290 WNAIIGGYSLNSQHHEALAFFNRMQVRG-------------------------------I 318

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P   T VS L ACA L  L +G+QIHG  +      N  V NAL +MYAK G ++ A  
Sbjct: 319 KPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LF+RM  +N+V+WN +ISGY ++G P + + LF EMQ  G+ PD   + ++L AC     
Sbjct: 379 LFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLA 438

Query: 268 ---------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                          F++               G ++ A +LF  + E+D V WTTMI+ 
Sbjct: 439 LEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILA 498

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDD 356
           Y  +G  EDAL LF++M     + D  + ++++++C+    +  G Q         G+  
Sbjct: 499 YGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAP 558

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYAQNGQDLEALALYD 413
            L   + L+D+  + G  D+A  +   M   P  NV  W +++ G  +   ++E      
Sbjct: 559 KLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANV--WGALL-GACRIHCNIELGEQAA 615

Query: 414 KLLQENLKPDSFTFVSVLS 432
           K L E L PD+  +  +LS
Sbjct: 616 KHLFE-LDPDNAGYYVLLS 633



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 148/313 (47%), Gaps = 44/313 (14%)

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W   I+GY +NG    AL L+ +M    + PDK    SV+ +C   + L  G+ VH  
Sbjct: 86  VVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHED 145

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +  G + D++V +AL  MY KCG  ++A  VF+ MP R+VVSWN++I GY+QNGQ  EA
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMI 467
           LAL+ ++    +KP+S T VSV+  C H    E+G Q H  +I +  GI   +     ++
Sbjct: 206 LALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS--GIESDVLVVNGLV 263

Query: 468 NLLGRSSDVDKAVDLIKSLP-------------------H---------------KPNSL 493
           N+  +  +V+ A  L + +P                   H               KPNS+
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 494 IWSTLLSVCAMKGDIKHGEM----AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
              ++L  CA    ++ G+     A R  FE   +       L NMYA CG       + 
Sbjct: 324 TMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNA---LVNMYAKCGNVNSAYKLF 380

Query: 550 SSMKSKNVKKFAA 562
             M  KNV  + A
Sbjct: 381 ERMPKKNVVAWNA 393


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/733 (38%), Positives = 428/733 (58%), Gaps = 73/733 (9%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C    +   AK+L   +  +   P T FL+N L++ Y+K G + YAR +FDKMP  +  S
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPET-FLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-- 150
           WN +LSA+++SG +  ++ +F  MP RD VS+N+ I+G+   G   EA++ ++ M KD  
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 151 -RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
                  ++ +  L +    +DL  G+QIHG+IV    G  VFV ++L DMYAK G +  
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDL--GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 210 ARWLFDRMNNRNLV-------------------------------SWNLMISGYLKNGQP 238
           A  +FD +  RN+V                               SW  MI+G ++NG  
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--------------------- 272
            + +DLF++M+  G+  D+ T  ++L AC      + G+                     
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 273 ---------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                    +  A  +F  +  K+ V WT M+VGY QNG  E+A+ +F +M    + PD 
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F++ SV+SSCA LASL  G   H +A+V G+   + VS+ALI +Y KCG  +D+  +F+ 
Sbjct: 372 FTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDE 431

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  R+ VSW ++++GYAQ G+  E + L++++L + LKPD+ TF++VLSAC  A L ERG
Sbjct: 432 MSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERG 491

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           Q +F+S+   HGI P  DHY CMI+L GR+  +++A + I  +P  P+S+ W+TLLS C 
Sbjct: 492 QQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCR 551

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + G+ + G+ AA  L EL+P N   YI+LS++YAA G+W +VA +R  M+ K  +K   +
Sbjct: 552 LYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGF 611

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SWI+  +KV+ F ++D++ P ++ IY EL KL  K+ E G+ P+   VLHD ++ EK+K 
Sbjct: 612 SWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKM 671

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           + +HSEKLA+A+ L+  PHG+ PIR++KN+RVCGDCH   K+ S I  R I++RD+ RFH
Sbjct: 672 LNHHSEKLAIAFGLLFIPHGL-PIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFH 730

Query: 684 HFVGGNCSCKDNW 696
            F  G CSC D W
Sbjct: 731 LFKDGTCSCGDFW 743


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 284/744 (38%), Positives = 424/744 (56%), Gaps = 69/744 (9%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           +++   Y  L+  C    +   AK+L   +     +P T FL N L+  Y K G L YA 
Sbjct: 2   SSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPET-FLSNNLITAYYKLGNLAYAH 60

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +FD +P  ++ SWN +LS +++ G +  ++ +F+ MP RD VS+N AI+G+AN G   +
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120

Query: 140 ALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           A++V+  M KD        T  + L  C++   +  G+QI+G+I+    G +VFV + L 
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLV 180

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLV-------------------------------SWNL 227
           DMY K G I  A+  FD M  RN+V                               SW +
Sbjct: 181 DMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTI 240

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR---------- 272
           MI+G ++NG  ++ +D+F+EM+L G   D+ T  ++L AC        G+          
Sbjct: 241 MITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTD 300

Query: 273 --------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                               I  A  +F  + +K+ + WT M+VGY QNG  E+A+ +F 
Sbjct: 301 HKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFF 360

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           EM    V PD F++ SV+SSCA LASL  G   H +A+V G+   + VS+ALI +Y KCG
Sbjct: 361 EMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCG 420

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
            T+++  +F  M  R+ VSW +++ GYAQ G+  E + L++++L   LKPD  TF+ VLS
Sbjct: 421 STENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLS 480

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC  A L E+G  +F+S+   HGI P +DH  C+I+LLGR+  +++A + I ++P  P+ 
Sbjct: 481 ACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDV 540

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           + W+TLLS C + GD++ G+ AA  L  LEP N   Y++LS++YA+ G+W+ VA +R  M
Sbjct: 541 VGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGM 600

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           + K V+K   YSWI+   KVH F ++D++ P    IY EL KL  K+ E G+ P+   VL
Sbjct: 601 RDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVL 660

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +E EK+K + +HSEKLA+A+ LI  P G+ PIR++KN+RVCGDCH   KF S I  R
Sbjct: 661 HDVEESEKIKMLNHHSEKLAIAFGLIFVPPGL-PIRVIKNLRVCGDCHNATKFISKITQR 719

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RD+ RFH F  G CSC D W
Sbjct: 720 EILVRDAVRFHLFKDGTCSCGDFW 743


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 257/638 (40%), Positives = 388/638 (60%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LLS +A+ GS+ D R +FD +  R+ VS+   I  F     + EA + +  M+    +
Sbjct: 135 NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCK 194

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T VS LNA      L+ G+++H +I    L     V  +L  MYAK G+I KA+ +
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD++  +N+V+W L+I+GY + GQ    ++L ++MQ   + P+++T ++IL  C      
Sbjct: 255 FDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLAL 314

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + +A +LF  +  +D V WT M+ GY
Sbjct: 315 EHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGY 374

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  ++A+ LF  M  + ++PDK + +S ++SC+  A L  G+ +H + V  G   D+
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + SAL+ MY KCG  DDA  VFN M  RNVV+W +MI G AQ+G+  EAL  ++++ ++
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQ 494

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +KPD  TF SVLSAC H  L E G+ HF S+   +GI P ++HY+C ++LLGR+  +++
Sbjct: 495 GIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 554

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A ++I ++P +P   +W  LLS C +  D++ GE AA ++ +L+P + G Y+ LSN+YAA
Sbjct: 555 AENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYAA 614

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            GR+ED   +R  M+ ++V K    SWIE+D KVH F  ED++HPE + IY EL KL ++
Sbjct: 615 AGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQ 674

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++E G+ P+T+ VLHD  EE+KV+++C HSE+LA+ Y L+K P G TPIRI+KN+RVCGD
Sbjct: 675 IKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPG-TPIRIVKNLRVCGD 733

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S ++GR II RD++RFHHFV G CSC D W
Sbjct: 734 CHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 108/210 (51%), Gaps = 4/210 (1%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           + G+ ++AL + N M+ +  R        ++  CA+L SL  G+ VH   +  G+  +  
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + L+ MY KCG   DA  VF+ +  RN+VSW +MI  +    Q+LEA   Y+ +    
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 420 LKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            KPD  TFVS+L+A  + +L + GQ  H +   A   + P +     ++ +  +  D+ K
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISK 250

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           A  +   LP K N + W+ L++  A +G +
Sbjct: 251 AQVIFDKLPEK-NVVTWTLLIAGYAQQGQV 279


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 275/713 (38%), Positives = 405/713 (56%), Gaps = 45/713 (6%)

Query: 25   AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TTFLHNRLLHFYAKS-----GKLFYA 78
            ++  ++    R  D   A RL   M     +P   TFLH  LL   A S     GK+ + 
Sbjct: 398  SWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLH--LLSACANSSAYADGKMIHE 455

Query: 79   RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
              L   +     ++ NAL++ + R GS+ + + +F+    RD +S+N+ IAG A  G   
Sbjct: 456  DILRSGIKSNGHLA-NALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYE 514

Query: 139  EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
             A ++F  MQ +  EP + T  S L+ C     L  GKQIHG+I    L  +V + NAL 
Sbjct: 515  TAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALI 574

Query: 199  DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
            +MY + G +  AR +F  + +R+++SW  MI G    G+  K I+LF +MQ  G  P + 
Sbjct: 575  NMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKS 634

Query: 259  TVSNILGACF-----------------------------------QTGRIDDAGRLFHVI 283
            T S+IL  C                                    ++G + DA  +F  +
Sbjct: 635  TFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKM 694

Query: 284  KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              +D V W  +I GY QNG  + A+    +M  +DV P+KFS  S++++C+  ++L  G+
Sbjct: 695  PSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGK 754

Query: 344  VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
             VH + V   +  D+ V +ALI MY KCG   +A  VF+ +  +NVV+WN+MIN YAQ+G
Sbjct: 755  RVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHG 814

Query: 404  QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
               +AL  ++ + +E +KPD  TF S+LSAC HA L   G   F S+ + +G+ P+++HY
Sbjct: 815  LASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHY 874

Query: 464  ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
             C++ LLGR+    +A  LI  +P  P++ +W TLL  C + G+I   E AA +  +L  
Sbjct: 875  GCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 934

Query: 524  INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
             N   YI+LSN+YAA GRW+DVA IR  M+ + ++K    SWIE+DN +H+F++ DR+HP
Sbjct: 935  RNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 994

Query: 584  ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
            ET  IY EL +L  +++EAG+ P+T+ VLHD  +  +  S+C HSE+LA+AY LIK P G
Sbjct: 995  ETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG 1054

Query: 644  VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             TPIRI KN+R+CGDCH   KF S ++GR II RDSNRFH F  G CSC+D W
Sbjct: 1055 -TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 139/453 (30%), Positives = 230/453 (50%), Gaps = 37/453 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL+S +AR G +   R LF  MP RD +S+N  IAG+A +    EA++++ +MQ
Sbjct: 364 DVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQ 423

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +P   T +  L+ACA       GK IH  I+   +  N  + NAL +MY + G + 
Sbjct: 424 SEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLM 483

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
           +A+ +F+    R+++SWN MI+G+ ++G  +    LFQEMQ   L PD +T +++L  C 
Sbjct: 484 EAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCK 543

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G + DA  +FH ++ +D + WT 
Sbjct: 544 NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTA 603

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI G    G++  A+ LF +M +E  RP K + SS++  C   A L  G+ V    +  G
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSG 663

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + D  V +ALI  Y K G   DA  VF+ MP+R++VSWN +I GYAQNG    A+    
Sbjct: 664 YELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAY 723

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ ++++ P+ F+FVS+L+AC      E G+     I     +   +   A +I++  + 
Sbjct: 724 QMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEI-VKRKLQGDVRVGAALISMYAKC 782

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               +A ++  ++  K N + W+ +++  A  G
Sbjct: 783 GSQGEAQEVFDNIIEK-NVVTWNAMINAYAQHG 814



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 167/634 (26%), Positives = 291/634 (45%), Gaps = 120/634 (18%)

Query: 8   RQAIDTLYSRGQAATEEA-YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           R+ +   +      TE A Y  L+ +CTR   +  AKR+ + M   +  P+  FL N L+
Sbjct: 11  REDVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDI-FLSNLLI 69

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           + Y K                                 SV D   +F +MP RD +S+N+
Sbjct: 70  NMYVKCR-------------------------------SVLDAHQVFKEMPRRDVISWNS 98

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            I+ +A +GF ++A Q+F  MQ   F P   T++S L AC    +L  GK+IH +I+   
Sbjct: 99  LISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG 158

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +  V+N+L  MY K G++ +AR +F  ++ R++VS+N M+  Y +    K+C+ LF 
Sbjct: 159 YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFG 218

Query: 247 EMQLLGLNPDEVTVSNILGA-----------------------------------CFQTG 271
           +M   G++PD+VT  N+L A                                   C + G
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCG 278

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            +D A + F    ++D V +  +I    Q+G   +A   +  M S+ V  ++ +  S+++
Sbjct: 279 DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILN 338

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +C+   +L  G+++H      G   D+ + +ALI MY +CG    A  +F  MP R+++S
Sbjct: 339 ACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLIS 398

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLF 440
           WN++I GYA+     EA+ LY ++  E +KP   TF+ +LSAC           +H D+ 
Sbjct: 399 WNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDIL 458

Query: 441 ERG------------------------QNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
             G                        QN F+   A   I+     +  MI    +    
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-----WNSMIAGHAQHGSY 513

Query: 477 DKAVDLIKSLPH---KPNSLIWSTLLSVC----AMK-GDIKHGEMAARHLFELEPINAGP 528
           + A  L + + +   +P+++ ++++LS C    A++ G   HG +    L +L+ +N G 
Sbjct: 514 ETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL-QLD-VNLGN 571

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            ++  NMY  CG  +D  ++  S++ ++V  + A
Sbjct: 572 ALI--NMYIRCGSLQDARNVFHSLQHRDVMSWTA 603



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/545 (28%), Positives = 246/545 (45%), Gaps = 83/545 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI    AL++   R G V   +  F     RD V YN  IA  A  G + EA + + RM+
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            D       T++S LNAC+    L  GK IH  I       +V + NAL  MYA+ G++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR LF  M  R+L+SWN +I+GY +     + + L+++MQ  G+ P  VT  ++L AC 
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            +                                   G + +A  +F   + +D + W +
Sbjct: 443 NSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNS 502

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI G+ Q+G  E A  LF EM +E++ PD  + +SV+S C    +L  G+ +HG+    G
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+ + +ALI+MY +CG   DA  VF+ +  R+V+SW +MI G A  G+D++A+ L+ 
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA--CMINLLG 471
           ++  E  +P   TF S+L  C  +   + G+     I+ +      LD      +I+   
Sbjct: 623 QMQNEGFRPVKSTFSSILKVCTSSACLDEGKK---VIAYILNSGYELDTGVGNALISAYS 679

Query: 472 RSSDVDKAVDLIKSLPHK----------------------------------PNSLIWST 497
           +S  +  A ++   +P +                                  PN   + +
Sbjct: 680 KSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVS 739

Query: 498 LLSVCAM-----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           LL+ C+      +G   H E+  R L     + A     L +MYA CG   +   +  ++
Sbjct: 740 LLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAA----LISMYAKCGSQGEAQEVFDNI 795

Query: 553 KSKNV 557
             KNV
Sbjct: 796 IEKNV 800


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/638 (39%), Positives = 382/638 (59%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+S +A+ GSV+D R +FD M  RD VS+ T    +A  G+++E+L+ +  M ++   
Sbjct: 184 NALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVR 243

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+  T+++ L+AC  L  L +GKQIH +IV      +V V  ALT MY K G +  AR +
Sbjct: 244 PSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREV 303

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F+ + NR++++WN MI G + +GQ ++   +F  M    + PD VT   IL AC      
Sbjct: 304 FECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGL 363

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA ++F  + ++D V WT ++ GY
Sbjct: 364 ACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGY 423

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
              G+  ++   F +ML + V  +K +   V+ +C+   +L  G+ +H + V  G+  DL
Sbjct: 424 ADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADL 483

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++AL+ MY KCG  +DA  V   M TR+VV+WN++I G AQNG+ LEAL  ++ +  E
Sbjct: 484 AVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSE 543

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++P++ TFV+V+SAC   +L E G+  F S+   +GI P+  HYACM+++L R+  + +
Sbjct: 544 EMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGE 603

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A D+I ++P KP++ +W  LL+ C   G+++ GE AA    +LEP NAG Y+ LS +YAA
Sbjct: 604 AEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAA 663

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W DVA +R  MK + VKK    SWIE+  +VH FV+ D++HP TE IY EL  L K+
Sbjct: 664 AGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQ 723

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P+T+ V+HD  +E K +++C+HSEKLA+AY LI  P   TPIR+ KN+RVC D
Sbjct: 724 IKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPE-TPIRVSKNLRVCTD 782

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S I GR II RD++RFHHF  G CSC D W
Sbjct: 783 CHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/529 (28%), Positives = 258/529 (48%), Gaps = 71/529 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L+ +G       Y +L+  C +  D+ + K++  H+     +PN   +            
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYII------------ 82

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
                               N LL  +   GSV + R LFDK   +  VS+N  I+G+A+
Sbjct: 83  --------------------NTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAH 122

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           +G  +EA  +F+ MQ++  EP  +T VS L+AC+    L  G+++H +++   L  N  V
Sbjct: 123 RGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATV 182

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  MYAK G +  AR +FD M +R+ VSW  +   Y ++G  ++ +  +  M   G+
Sbjct: 183 GNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGV 242

Query: 254 NPDEVTVSNILGAC-----------------------------------FQTGRIDDAGR 278
            P  +T  N+L AC                                    + G + DA  
Sbjct: 243 RPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDARE 302

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +  +D + W TMI G   +G+ E+A  +F+ ML E V PD+ +  +++S+CA+   
Sbjct: 303 VFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGG 362

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H +AV  G+  D+   +ALI+MY K G   DA  VF+ MP R+VVSW +++ G
Sbjct: 363 LACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGG 422

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGIT 457
           YA  GQ +E+ + + K+LQ+ ++ +  T++ VL AC +    + G+  H + + A  GI 
Sbjct: 423 YADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA--GIF 480

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             L     ++++  +   V+ A+ + + +  + + + W+TL+   A  G
Sbjct: 481 ADLAVANALMSMYFKCGSVEDAIRVSEGMSTR-DVVTWNTLIGGLAQNG 528



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 167/348 (47%), Gaps = 38/348 (10%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
            G+ P+   ++ +L      G +++A RLF     K  V W  MI GY   G  ++A  L
Sbjct: 73  FGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNL 132

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M  E + PDKF+  S++S+C+  A+L  G+ VH + +  G+ ++  V +ALI MY K
Sbjct: 133 FTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAK 192

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG   DA  VF+ M +R+ VSW ++   YA++G   E+L  Y  +LQE ++P   T+++V
Sbjct: 193 CGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNV 252

Query: 431 LSACLHADLFERG-QNHFDSISAVH------------------GITPSLDHYAC------ 465
           LSAC      E+G Q H   + + H                   +  + + + C      
Sbjct: 253 LSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDV 312

Query: 466 -----MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHG-EMAAR 516
                MI  L  S  +++A  +   +  +   P+ + +  +LS CA  G +  G E+ AR
Sbjct: 313 IAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHAR 372

Query: 517 HLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            + +  +  +  G  ++  NMY+  G  +D   +   M  ++V  + A
Sbjct: 373 AVKDGLVSDVRFGNALI--NMYSKAGSMKDARQVFDRMPKRDVVSWTA 418



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 6/220 (2%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D +    ++ SC K   L  G+ VH   +  G+  ++ + + L+ +Y  CG  ++A  +F
Sbjct: 43  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           +    ++VVSWN MI+GYA  G   EA  L+  + QE L+PD FTFVS+LSAC       
Sbjct: 103 DKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALN 162

Query: 442 RGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            G+  H   + A  G+  +      +I++  +   V  A  +  ++  + + + W+TL  
Sbjct: 163 WGREVHVRVMEA--GLANNATVGNALISMYAKCGSVRDARRVFDAMASR-DEVSWTTLTG 219

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
             A  G  +   +   H    E +     I   N+ +ACG
Sbjct: 220 AYAESGYAQE-SLKTYHAMLQEGVRPS-RITYMNVLSACG 257


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 256/643 (39%), Positives = 381/643 (59%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D    NAL+S +A+ GSV+D R +FD M  RD VS+ T    +A  G+  E+L+ +  M 
Sbjct: 163 DTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAML 222

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++R  P+  T+++ L+AC  L  L +GKQIH  IV      +V V  ALT MY K G   
Sbjct: 223 QERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFK 282

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +F+ ++ R++++WN MI G++ +GQ ++    F  M   G+ PD  T + +L AC 
Sbjct: 283 DAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACA 342

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G + DA ++F  + ++D V WTT
Sbjct: 343 RPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTT 402

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y    +  ++   F +ML + V+ +K +   V+ +C+   +L  G+ +H + V  G
Sbjct: 403 LLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 462

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  DL V++AL+ MY KCG  +DA  VF  M  R+VV+WN++I G  QNG+ LEAL  Y+
Sbjct: 463 LLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYE 522

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +  E ++P++ TFV+VLSAC   +L E G+  F  +S  +GI P+  HYACM+++L R+
Sbjct: 523 VMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARA 582

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A D+I ++P KP++ +W  LL+ C +  +++ GE AA H  +LEP NAG Y+ LS
Sbjct: 583 GHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLS 642

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            +YAA G W DVA +R  MK + VKK    SWIEI  +VH FV+ D++HP T+ IY EL 
Sbjct: 643 AIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELE 702

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L K+++  G+ P+T+ V+HD  +E K +++C+HSEKLA+AY LI  P G TPIRI KN+
Sbjct: 703 TLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPG-TPIRISKNL 761

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   KF S I  R II RD++RFHHF  G CSC D W
Sbjct: 762 RVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 147/529 (27%), Positives = 256/529 (48%), Gaps = 71/529 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L+ +G       Y +L+  C +  D+ + K++  H+     +PN  ++ N LL  YA   
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNV-YITNTLLKLYA--- 74

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
                                         GSV + R LFDK   +  VS+N  I+G+A+
Sbjct: 75  ----------------------------HCGSVNEARQLFDKFSNKSVVSWNVMISGYAH 106

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           +G ++EA  +F+ MQ++R EP  +T VS L+AC+    L  G++IH +++   L  +  V
Sbjct: 107 RGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTV 166

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  MYAK G +  AR +FD M +R+ VSW  +   Y ++G  ++ +  +  M    +
Sbjct: 167 GNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERV 226

Query: 254 NPDEVTVSNILGAC-----------------------------------FQTGRIDDAGR 278
            P  +T  N+L AC                                    + G   DA  
Sbjct: 227 RPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDARE 286

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +  +D + W TMI G+  +G+ E+A   F+ ML E V PD+ + ++V+S+CA+   
Sbjct: 287 VFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGG 346

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H +A   G+  D+   +ALI+MY K G   DA  VF+ MP R+VVSW +++  
Sbjct: 347 LARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGR 406

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGIT 457
           YA   Q +E+   + ++LQ+ +K +  T++ VL AC +    + G+  H + + A  G+ 
Sbjct: 407 YADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKA--GLL 464

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             L     ++++  +   V+ A+ + + +  + + + W+TL+      G
Sbjct: 465 ADLAVTNALMSMYFKCGSVEDAIRVFEGMSMR-DVVTWNTLIGGLGQNG 512



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 108/221 (48%), Gaps = 8/221 (3%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D +    ++ SC K   L  G+ VH   +  GV  ++ +++ L+ +Y  CG  ++A  +F
Sbjct: 27  DSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLF 86

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           +    ++VVSWN MI+GYA  G   EA  L+  + QE L+PD FTFVS+LSAC    +  
Sbjct: 87  DKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLN 146

Query: 442 RGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            G+  H   + A  G+         +I++  +   V  A  +  ++  + + + W+TL  
Sbjct: 147 WGREIHVRVMEA--GLANDTTVGNALISMYAKCGSVRDARRVFDAMASR-DEVSWTTLTG 203

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACG 540
             A  G   +GE + +    +      P  I   N+ +ACG
Sbjct: 204 AYAESG---YGEESLKTYHAMLQERVRPSRITYMNVLSACG 241


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/639 (40%), Positives = 386/639 (60%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LLS +A+ GS+ D R +FD +  R+ VS+   I  F     + EA + +  M+    +
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T VS LNA      L+ G+++H +IV   L     V  +L  MYAK G+I KAR +
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FDR+  +N+V+W L+I+GY + GQ    ++L + MQ   + P+++T ++IL  C      
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A +LF  +  +D V WT M+ GY
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGY 325

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  ++A+ LF  M  + ++PDK + +SV++SC+  A L  G+ +H + V  G + D+
Sbjct: 326 AQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY-AQNGQDLEALALYDKLLQ 417
            + SAL+ MY KCG  DDA  VFN M  RNVV+W ++I G  AQ+G+  EAL  +D++ +
Sbjct: 386 YLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKK 445

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + +KPD  TF SVLSAC H  L E G+ HF S+   +GI P ++HY+C ++LLGR+  ++
Sbjct: 446 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 505

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A ++I S+P  P   +W  LLS C +  D++ GE AA ++ +L+P + G Y+ LS++YA
Sbjct: 506 EAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIYA 565

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A GR+ED   +R  M+ ++V K    SWIE+D KVH F  ED++HPE+E IY EL KL +
Sbjct: 566 AAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTE 625

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +++E G+ P+T+ VLHD  EE+K + +  HSE+LA+ Y L+K P G+ PIRI+KN+RVCG
Sbjct: 626 QIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGM-PIRIVKNLRVCG 684

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S ++GR II RD+ RFHHF  G CSC D W
Sbjct: 685 DCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 48/304 (15%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           + G+ ++AL + N M+ +  R        ++  CA+L SL  G+ VH   +  G+  +  
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + L+ MY KCG   DA  VF+ +  RN+VSW +MI  +    ++LEA   Y+ +    
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 420 LKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            KPD  TFVS+L+A  + +L + GQ  H + + A   + P +     ++ +  +  D+ K
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKCGDISK 201

Query: 479 AVDLIKSLPHK----------------------------------PNSLIWSTLLSVCAM 504
           A  +   LP K                                  PN + ++++L  C  
Sbjct: 202 ARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTT 261

Query: 505 KGDIKHGEMAARHLF------ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
              ++HG+   R++       EL  +N+     L  MY  CG  E+   + S +  ++V 
Sbjct: 262 PAALEHGKKVHRYIIQSGYGRELWVVNS-----LITMYCKCGGLEEARKLFSDLPHRDVV 316

Query: 559 KFAA 562
            + A
Sbjct: 317 TWTA 320


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/673 (38%), Positives = 411/673 (61%), Gaps = 20/673 (2%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFD 83
           ++  ++  C R  ++  A+ L   M      P    +  N +L  YA++G +  A+++FD
Sbjct: 113 SWNVMISGCVRYRNLRAARLLFDQM------PERDVVSWNAMLSGYAQNGYVKEAKEIFD 166

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP ++ ISWN +L+A+ ++G ++D R LF+     + +S+N  + G+  +    +A  +
Sbjct: 167 EMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGI 226

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F RM  +R E +  T +S      +LL+ +R       +   +   +VF   A+   Y +
Sbjct: 227 FDRM-PERDEVSWNTMISGYAQNGELLEAQR-------LFEESPVRDVFTWTAMVSGYVQ 278

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D+AR +FD M  +N VSWN +I+GY++  +  +  +LF+ M    ++    + + +
Sbjct: 279 NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTM 334

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           +    Q G I  A   F  + ++D++ W  +I GY Q+G  E+AL LF EM  +  R ++
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 394

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            + +S +S+CA++A+L  G+ VHG+ V  G++    V +AL+ MYCKCG  DDA+ VF  
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 454

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +  + VVSWN+MI GYA++G   EAL L++ + +  + PD  T V VLSAC H  L ++G
Sbjct: 455 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKG 514

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
             +F S++  +GIT +  HY CMI+LLGR+  +D A +L+K++P +P++  W  LL    
Sbjct: 515 TEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASR 574

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + G+ + GE AA+ +FE+EP N+G Y++LSN+YAA GRW DV  +R  M+ + VKK   Y
Sbjct: 575 IHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGY 634

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SW+E+ NK+H F   D  HPE + IY  L +L  K+++ G+  +TKLVLHD +EEEKV  
Sbjct: 635 SWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHM 694

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           + YHSEKLA+A+ ++  P G  PIR++KN+RVC DCH  MK  S I+GR IILRDS+RFH
Sbjct: 695 LKYHSEKLAVAFGILAIPAG-RPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFH 753

Query: 684 HFVGGNCSCKDNW 696
           HF GG CSC D W
Sbjct: 754 HFNGGQCSCGDYW 766



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/362 (29%), Positives = 184/362 (50%), Gaps = 30/362 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+ WN  ++ H R+G       LF+ MP R S+S+N  I+G  +      A Q+F +M 
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKM- 106

Query: 149 KDRFEPT-DYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
                PT D    + + + C +  +LR  + +  ++       +V   NA+   YA+ G 
Sbjct: 107 -----PTRDLVSWNVMISGCVRYRNLRAARLLFDQMPE----RDVVSWNAMLSGYAQNGY 157

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + +A+ +FD M  +N +SWN M++ Y++NG+ +    LF+      L    ++ + ++G 
Sbjct: 158 VKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWEL----ISWNCMMGG 213

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             +  R+ DA  +F  + E+D V W TMI GY QNG+  +A  LF E    DV    F+ 
Sbjct: 214 YVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTW 269

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMP 385
           +++VS   +     +G +   + V  G+ +   VS +A+I  Y +C   D A  +F  MP
Sbjct: 270 TAMVSGYVQ-----NGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMP 324

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            +NV SWN+MI GYAQNG   +A   +D++ Q     DS ++ ++++    +   E   +
Sbjct: 325 CQNVSSWNTMITGYAQNGDIAQARNFFDRMPQR----DSISWAAIIAGYAQSGYGEEALH 380

Query: 446 HF 447
            F
Sbjct: 381 LF 382



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/275 (25%), Positives = 130/275 (47%), Gaps = 27/275 (9%)

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS--SVVSSCAKLASLYHG 342
           + D V W   I  + +NG+ + AL LFN M      P + SIS  +++S C      Y  
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSM------PRRSSISWNAMISGCLSNDKFYLA 99

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +  K        DL+  + +I    +      A  +F+ MP R+VVSWN+M++GYAQN
Sbjct: 100 RQLFEKMPT----RDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQN 155

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA  ++D++  +N    S ++  +L+A +     E  +  F+S +    I+     
Sbjct: 156 GYVKEAKEIFDEMPCKN----SISWNGMLAAYVQNGRIEDARRLFESKADWELIS----- 206

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           + CM+    + + +  A  +   +P + + + W+T++S  A  G++    + A+ LFE  
Sbjct: 207 WNCMMGGYVKRNRLVDARGIFDRMPER-DEVSWNTMISGYAQNGEL----LEAQRLFEES 261

Query: 523 PI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           P+ +   +  + + Y   G  ++   +   M  KN
Sbjct: 262 PVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKN 296



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 18/171 (10%)

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           L  D D++  +  I  + + G  D A  +FN MP R+ +SWN+MI+G   N +   A  L
Sbjct: 43  LATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQL 102

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD--HYACMINL 469
           ++K+   +L     ++  ++S C+        +  FD +       P  D   +  M++ 
Sbjct: 103 FEKMPTRDL----VSWNVMISGCVRYRNLRAARLLFDQM-------PERDVVSWNAMLSG 151

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
             ++  V +A ++   +P K NS+ W+ +L+     G I+     AR LFE
Sbjct: 152 YAQNGYVKEAKEIFDEMPCK-NSISWNGMLAAYVQNGRIED----ARRLFE 197



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
           T  ++    ++V WN  I  + +NGQ   AL L++ + + +    S ++ +++S CL  D
Sbjct: 39  TTSSLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRS----SISWNAMISGCLSND 94

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            F   +  F+ +      T  L  +  MI+   R  ++  A  L   +P + + + W+ +
Sbjct: 95  KFYLARQLFEKMP-----TRDLVSWNVMISGCVRYRNLRAARLLFDQMPER-DVVSWNAM 148

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDV 545
           LS  A  G +K     A+ +F+  P  N+  +  +   Y   GR ED 
Sbjct: 149 LSGYAQNGYVKE----AKEIFDEMPCKNSISWNGMLAAYVQNGRIEDA 192


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/739 (37%), Positives = 419/739 (56%), Gaps = 70/739 (9%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C   ++   AK L SH+      P T FL N L+  YAK G + YA  +FD+M
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPET-FLLNNLISSYAKLGSIPYACKVFDQM 70

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P  ++ SWN +LSA+++ G V ++  LFD MP RD VS+N+ I+G+A  G   ++++ ++
Sbjct: 71  PHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 146 RMQKD--RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
            M K+   F     T  + L   ++   ++ G+QIHG +V       VFV + L DMY+K
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSK 190

Query: 204 GGEIDKARWLFDRMNNRNLV-------------------------------SWNLMISGY 232
            G I  AR +FD +  +N+V                               SW  MI+G+
Sbjct: 191 MGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGF 250

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--------------- 272
            +NG  +  ID+F+EM+L  L  D+ T  ++L AC      Q G+               
Sbjct: 251 TQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNI 310

Query: 273 ---------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                          I  A  +F  +  K+ V WT M+VGY QNG  E+A+  F++M   
Sbjct: 311 FVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKY 370

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + PD F++ SV+SSCA LASL  G   H +A+  G+   + VS+AL+ +Y KCG  +D+
Sbjct: 371 GIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDS 430

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             +FN +  ++ V+W ++++GYAQ G+  E + L++ +L   LKPD  TF+ VLSAC  A
Sbjct: 431 HRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRA 490

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L E+G   F+S+   HGI P  DHY CMI+L  R+  +++A + I  +P  P+++ W+T
Sbjct: 491 GLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWAT 550

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           LLS C   G++  G+ AA  L EL+P N   Y++LS++YAA G+WE+VA +R  M+ K +
Sbjct: 551 LLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGL 610

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
           +K    SWI+  N+VH F ++D+++P ++ IY EL KL  K+ + G+ P+   VLHD  +
Sbjct: 611 RKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGD 670

Query: 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
            EK+K + +HSEKLA+A+ L+  P G+ PIR++KN+RVC DCH   K+ S I  R I++R
Sbjct: 671 SEKIKMLNHHSEKLAIAFGLLFIPPGL-PIRVVKNLRVCSDCHNATKYISKITNREILVR 729

Query: 678 DSNRFHHFVGGNCSCKDNW 696
           D+ RFH F  G CSC D W
Sbjct: 730 DTARFHLFKDGTCSCGDFW 748


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 262/665 (39%), Positives = 407/665 (61%), Gaps = 20/665 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C R  ++  A+ L   M      P    +  N +L  YA++G +  A+++FD+MP ++ I
Sbjct: 40  CVRYRNLRAARLLFDQM------PERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSI 93

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SWN +L+A+ ++G ++D R LF+     + +S+N  + G+  +    +A  +F RM  +R
Sbjct: 94  SWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRM-PER 152

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            E +  T +S      +LL+ +R       +   +   +VF   A+   Y + G +D+AR
Sbjct: 153 DEVSWNTMISGYAQNGELLEAQR-------LFEESPVRDVFTWTAMVSGYVQNGMLDEAR 205

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD M  +N VSWN +I+GY++  +  +  +LF+ M    ++    + + ++    Q G
Sbjct: 206 RVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVS----SWNTMITGYAQNG 261

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            I  A   F  + ++D++ W  +I GY Q+G  E+AL LF EM  +  R ++ + +S +S
Sbjct: 262 DIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLS 321

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA++A+L  G+ VHG+ V  G++    V +AL+ MYCKCG  DDA+ VF  +  + VVS
Sbjct: 322 TCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVS 381

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WN+MI GYA++G   EAL L++ + +  + PD  T V VLSAC H  L ++G  +F S++
Sbjct: 382 WNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMT 441

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GIT +  HY CMI+LLGR+  +D A +L+K++P +P++  W  LL    + G+ + G
Sbjct: 442 QDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG 501

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           E AA+ +FE+EP N+G Y++LSN+YAA GRW DV  +R  M+ + VKK   YSW+E+ NK
Sbjct: 502 EKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNK 561

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
           +H F   D  HPE + IY  L +L  K+++ G+  +TKLVLHD +EEEKV  + YHSEKL
Sbjct: 562 IHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKL 621

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A+A+ ++  P G  PIR++KN+RVC DCH  MK  S I+GR IILRDS+RFHHF GG CS
Sbjct: 622 AVAFGILAIPAG-RPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCS 680

Query: 692 CKDNW 696
           C D W
Sbjct: 681 CGDYW 685



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 49/271 (18%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+      +T  +  C  +  +EL K++   +     E +  ++ N LL  Y K G +  
Sbjct: 308 GERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLE-SGCYVGNALLVMYCKCGNIDD 366

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +F+ +  ++++SWN +++ +AR                                GF 
Sbjct: 367 AYIVFEGIEEKEVVSWNTMIAGYAR-------------------------------HGFG 395

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNA 196
           +EAL +F  M+K    P D T V  L+AC+    + +G +    +     +  N      
Sbjct: 396 KEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTC 455

Query: 197 LTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP---KKCIDLFQEMQLLG 252
           + D+  + G +D A+ L   M    +  +W  ++     +G     +K   +  EM+   
Sbjct: 456 MIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEME--- 512

Query: 253 LNPDE----VTVSNILGACFQTGRIDDAGRL 279
             PD     V +SN+  A   +GR  D GR+
Sbjct: 513 --PDNSGMYVLLSNLYAA---SGRWGDVGRM 538


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 255/643 (39%), Positives = 381/643 (59%), Gaps = 36/643 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+    AL+  +A+ GS +D R +F+K+  RD +++NT I G A  G   EA +++ +MQ
Sbjct: 379  DLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQ 438

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            ++   P   T+V  LNAC     L  G++IH ++V      ++ V+NAL  MYA+ G I 
Sbjct: 439  REGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIK 498

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
             AR LF++M  ++++SW  MI G  K+G   + + +FQ+MQ  GL P+ VT ++IL AC 
Sbjct: 499  DARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACS 558

Query: 269  Q-----------------------------------TGRIDDAGRLFHVIKEKDNVCWTT 293
                                                 G + DA ++F  + ++D V +  
Sbjct: 559  SPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNA 618

Query: 294  MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            MI GY  +   ++AL LF+ +  E ++PDK +  +++++CA   SL   + +H   +  G
Sbjct: 619  MIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDG 678

Query: 354  VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
               D  + +AL+  Y KCG   DA  VF+ M  RNV+SWN++I G AQ+G+  + L L++
Sbjct: 679  YLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFE 738

Query: 414  KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            ++  E +KPD  TFVS+LSAC HA L E G+ +F S+S   GITP+++HY CM++LLGR+
Sbjct: 739  RMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRA 798

Query: 474  SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              +D+   LIK++P + N+ IW  LL  C + G++   E AA    +L+P NA  Y+ LS
Sbjct: 799  GQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALS 858

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            +MYAA G W+  A +R  M+ + V K    SWIE+ +K+H FV+EDR+HPE+E IY EL 
Sbjct: 859  HMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELD 918

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            KL   ++  G+ P+T+ V+HD  E EK  ++C+HSE+LA+AY LI    G TPIRI KN+
Sbjct: 919  KLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPG-TPIRIFKNL 977

Query: 654  RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            RVC DCH   KF + I+ R I+ RD NRFHHF  G CSC D W
Sbjct: 978  RVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 236/455 (51%), Gaps = 37/455 (8%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D+   N +L+ +A+ GS+ + R +FDKM  +  VS+   I G+A+ G S  A ++F +
Sbjct: 276 LFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQK 335

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ++   P   T+++ LNA +    L+ GK +H  I+      ++ V  AL  MYAK G 
Sbjct: 336 MQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGS 395

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
               R +F+++ NR+L++WN MI G  + G  ++  +++ +MQ  G+ P+++T   +L A
Sbjct: 396 YKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNA 455

Query: 267 CF-----------------------------------QTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G I DA  LF+ +  KD + W
Sbjct: 456 CVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISW 515

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T MI G  ++G   +AL +F +M    ++P++ + +S++++C+  A+L  G+ +H + + 
Sbjct: 516 TAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+  D  V++ L++MY  CG   DA  VF+ M  R++V++N+MI GYA +    EAL L
Sbjct: 576 AGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKL 635

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +D+L +E LKPD  T++++L+AC ++   E  +    S+    G          +++   
Sbjct: 636 FDRLQEEGLKPDKVTYINMLNACANSGSLEWAKE-IHSLVLKDGYLSDTSLGNALVSTYA 694

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +      A+ L+     K N + W+ ++  CA  G
Sbjct: 695 KCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQHG 728



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 158/637 (24%), Positives = 285/637 (44%), Gaps = 107/637 (16%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM--PIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           D  + NAL++ + + GS+++ R +++K+    R   S+N  + G+   G+  EAL++   
Sbjct: 175 DQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLRE 234

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ+        T +  L++C     L  G++IH + +   L  +V V N + +MYAK G 
Sbjct: 235 MQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGS 294

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           I +AR +FD+M  +++VSW ++I GY   G  +   ++FQ+MQ  G+ P+ +T  N+L A
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354

Query: 267 -----------------------------------CFQTGRIDDAGRLFHVIKEKDNVCW 291
                                                + G   D  ++F  +  +D + W
Sbjct: 355 FSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 414

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            TMI G  + G  E+A  ++++M  E + P+K +   ++++C    +L+ G+ +H + V 
Sbjct: 415 NTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G   D+ V +ALI MY +CG   DA  +FN M  ++++SW +MI G A++G   EALA+
Sbjct: 475 DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 412 YDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERG-----------QNHFDS 449
           +  + Q  LKP+  T+ S+L+AC           +H  + E G            N +  
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSM 594

Query: 450 ISAVHGITPSLDH--------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTL 498
             +V       D         Y  MI      +   +A+ L   L     KP+ + +  +
Sbjct: 595 CGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 654

Query: 499 LSVCAMKGDIKHGE------MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+ CA  G ++  +      +   +L +    NA     L + YA CG + D   +   M
Sbjct: 655 LNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA-----LVSTYAKCGSFSDALLVFDKM 709

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
             +NV      SW  I   +       R         +++ +L ++++  G  P+    +
Sbjct: 710 MKRNV-----ISWNAI---IGGCAQHGRG--------QDVLQLFERMKMEGIKPDIVTFV 753

Query: 613 HDTQEEEKVKSICYHS---EKLALAYCLIKKPHGVTP 646
                   + S C H+   E+    +C + +  G+TP
Sbjct: 754 -------SLLSACSHAGLLEEGRRYFCSMSRDFGITP 783



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 183/411 (44%), Gaps = 74/411 (18%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N L+  YA+ G +  AR LF+KM  +DIISW A+                        
Sbjct: 483 VQNALISMYARCGSIKDARLLFNKMVRKDIISWTAM------------------------ 518

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                  I G A  G   EAL VF  MQ+   +P   T+ S LNAC+    L  G++IH 
Sbjct: 519 -------IGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQ 571

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +++   L  +  V N L +MY+  G +  AR +FDRM  R++V++N MI GY  +   K+
Sbjct: 572 QVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKE 631

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID-------------------------- 274
            + LF  +Q  GL PD+VT  N+L AC  +G ++                          
Sbjct: 632 ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVS 691

Query: 275 ---------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                    DA  +F  + +++ + W  +I G  Q+G+ +D L LF  M  E ++PD  +
Sbjct: 692 TYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVT 751

Query: 326 ISSVVSSCAKLASLYHGQVVH-GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
             S++S+C+    L  G+      +   G+   +     ++D+  + G  D+   +   M
Sbjct: 752 FVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM 811

Query: 385 PTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLK--PDSFTFVSVLS 432
           P + N   W +++     +G     + + ++  + +LK  PD+      LS
Sbjct: 812 PFQANTRIWGALLGACRIHGN----VPVAERAAESSLKLDPDNAAVYVALS 858



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 9/229 (3%)

Query: 65  LLHFYAKSGKLFYARDLFDKM----PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +L+  A SG L +A+++   +     L D    NAL+S +A+ GS  D   +FDKM  R+
Sbjct: 654 MLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRN 713

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            +S+N  I G A  G  ++ LQ+F RM+ +  +P   T VS L+AC+    L  G++   
Sbjct: 714 VISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFC 773

Query: 181 KIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
            +     +   +     + D+  + G++D+   L   M    N   W  ++     +G  
Sbjct: 774 SMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNV 833

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK 286
              +        L L+PD   V   L   +   G  D A +L  +++++
Sbjct: 834 P--VAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQR 880



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 102/248 (41%), Gaps = 37/248 (14%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D L   G    +  Y  ++  C     +E AK + S +  + Y  +T+ L N L+  YAK
Sbjct: 637 DRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTS-LGNALVSTYAK 695

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTA 127
            G    A  +FDKM  R++ISWNA++   A+ G  QD+  LF++M +     D V++ + 
Sbjct: 696 CGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSL 755

Query: 128 IAGFANKGFSREALQVFSRMQKD-RFEPTDYTH---VSALNACAQLLD------------ 171
           ++  ++ G   E  + F  M +D    PT   +   V  L    QL +            
Sbjct: 756 LSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQA 815

Query: 172 -------LRRGKQIHGKIVVGNLGG---------NVFVRNALTDMYAKGGEIDKARWLFD 215
                  L    +IHG + V              N  V  AL+ MYA  G  D A  L  
Sbjct: 816 NTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRK 875

Query: 216 RMNNRNLV 223
            M  R + 
Sbjct: 876 LMEQRGVT 883



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/352 (21%), Positives = 143/352 (40%), Gaps = 67/352 (19%)

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           T  GK+  A+ +   +  +  R +      ++  C ++  L  G+ VH   +      D 
Sbjct: 118 TITGKDR-AMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQ 176

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              +ALI+MY +CG  ++A  V+N +    R V SWN+M+ GY Q G   EAL L  ++ 
Sbjct: 177 YTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQ 236

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSD 475
           Q  L     T + +LS+C      E G+  H +++ A   +   ++   C++N+  +   
Sbjct: 237 QHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKA--RLLFDVNVANCILNMYAKCGS 294

Query: 476 VDKAVDLIKSLPHK----------------------------------PNSLIWSTLLSV 501
           + +A ++   +  K                                  PN + +  +L+ 
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPY------IMLSNMYAACGRWEDVASIRSSMKSK 555
            +    +K G+    H+     +NAG          L  MYA CG ++D   +   + ++
Sbjct: 355 FSGPAALKWGKTVHSHI-----LNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR 409

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           ++      +W    N +   ++E          +EE S++  ++Q  G  PN
Sbjct: 410 DL-----IAW----NTMIGGLAEGGN-------WEEASEIYHQMQREGMMPN 445


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 268/713 (37%), Positives = 404/713 (56%), Gaps = 45/713 (6%)

Query: 25   AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TTFLHNRLLHFYAKS-----GKLFYA 78
            ++  ++    R  D   A +L   M     +P   TFLH  LL     S     GK+ + 
Sbjct: 453  SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLH--LLSACTNSSAYSDGKMIHE 510

Query: 79   RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
              L   +     ++ NAL++ + R GS+ + + +F+    RD +S+N+ IAG A  G   
Sbjct: 511  DILRSGIKSNGHLA-NALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYE 569

Query: 139  EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
             A ++F  M+K+  EP   T  S L  C     L  G+QIH  I+   L  +V + NAL 
Sbjct: 570  AAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALI 629

Query: 199  DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
            +MY + G +  A  +F  + +RN++SW  MI G+   G+ +K  +LF +MQ  G  P + 
Sbjct: 630  NMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKS 689

Query: 259  TVSNILGACF-----------------------------------QTGRIDDAGRLFHVI 283
            T S+IL AC                                    ++G + DA ++F  +
Sbjct: 690  TFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKM 749

Query: 284  KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              +D + W  MI GY QNG    AL    +M  + V  +KFS  S++++C+  ++L  G+
Sbjct: 750  PNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGK 809

Query: 344  VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
             VH + V   +  D+ V +ALI MY KCG  ++A  VF+    +NVV+WN+MIN YAQ+G
Sbjct: 810  RVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHG 869

Query: 404  QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
               +AL  ++ + +E +KPD  TF S+LSAC H+ L   G   F S+ + HG++P+++HY
Sbjct: 870  LASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHY 929

Query: 464  ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
             C++ LLGR+    +A  LI  +P  P++ +W TLL  C + G++   E AA +  +L  
Sbjct: 930  GCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNA 989

Query: 524  INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
             N   Y++LSN+YAA GRW+DVA IR  M+ + ++K    SWIE+DN +H+F++ DR+HP
Sbjct: 990  RNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHP 1049

Query: 584  ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
            ET  IYEEL +L  +++ AG+SP+T+ VLH+  +E +  S+C HSE+LA+AY L+K P G
Sbjct: 1050 ETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPG 1109

Query: 644  VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             TPIRI KN+R+CGDCH   KF S ++GR II RDSNRFH F  G CSC+D W
Sbjct: 1110 -TPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 171/634 (26%), Positives = 288/634 (45%), Gaps = 120/634 (18%)

Query: 8   RQAIDTLYS-RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           R+ +   Y  R       AY  LV +CTR   +  AKR+ + M      P+  FL N L+
Sbjct: 66  REDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDI-FLSNLLI 124

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           + Y K   +  A  +F KMP RD+ISWN+L+S                            
Sbjct: 125 NMYVKCRSVSDAHQVFLKMPRRDVISWNSLISC--------------------------- 157

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
               +A +GF ++A Q+F  MQ   F P+  T++S L AC    +L  GK+IH KI+   
Sbjct: 158 ----YAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAG 213

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +  V+N+L +MY K  ++  AR +F  +  R++VS+N M+  Y +    ++CI LF 
Sbjct: 214 YQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFG 273

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH------------------------- 281
           +M   G+ PD+VT  N+L A F T  + D G+  H                         
Sbjct: 274 QMSSEGIPPDKVTYINLLDA-FTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332

Query: 282 -----------VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                         ++D V +  +I    Q+G  E+A   + +M S+ V  ++ +  SV+
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++C+   +L  G+++H     +G   D+ + ++LI MY +CG    A  +FN MP R+++
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLI 452

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDS 449
           SWN++I GYA+     EA+ LY ++  E +KP   TF+ +LSAC ++  +  G+  H D 
Sbjct: 453 SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDI 512

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           + +  GI  +      ++N+  R   + +A ++ +    + + + W+++++     G  +
Sbjct: 513 LRS--GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIA-----GHAQ 564

Query: 510 HGEM-AARHLF------ELEP----------------------------INAGPYI---- 530
           HG   AA  LF       LEP                            I +G  +    
Sbjct: 565 HGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL 624

Query: 531 --MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              L NMY  CG  +D   +  S++ +NV  + A
Sbjct: 625 GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTA 658



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 224/456 (49%), Gaps = 39/456 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD    N+LL+ + +   +   R +F  +  RD VSYNT +  +A K +  E + +F +M
Sbjct: 216 RDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQM 275

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             +   P   T+++ L+A      L  GK+IH   V   L  ++ V  AL  M+ + G++
Sbjct: 276 SSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDV 335

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A+   +   +R++V +N +I+   ++G  ++  + + +M+  G+  +  T  ++L AC
Sbjct: 336 AGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNAC 395

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
             +                                   G +  A  LF+ + ++D + W 
Sbjct: 396 STSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWN 455

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I GY +     +A+ L+ +M SE V+P + +   ++S+C   ++   G+++H   +  
Sbjct: 456 AIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS 515

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  +  +++AL++MY +CG   +A  VF     R+++SWNSMI G+AQ+G    A  L+
Sbjct: 516 GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLF 575

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLG 471
            ++ +E L+PD  TF SVL  C + +  E G Q H   I +  G+   ++    +IN+  
Sbjct: 576 LEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIES--GLQLDVNLGNALINMYI 633

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           R   +  A ++  SL H+ N + W+ ++   A +G+
Sbjct: 634 RCGSLQDAYEVFHSLRHR-NVMSWTAMIGGFADQGE 668



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 196/410 (47%), Gaps = 39/410 (9%)

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           ++G  RE L   +  Q    E     +V  +  C +   L   K+IH ++V   +G ++F
Sbjct: 61  HRGSEREDLS--NAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIF 118

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           + N L +MY K   +  A  +F +M  R+++SWN +IS Y + G  KK   LF+EMQ  G
Sbjct: 119 LSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAG 178

Query: 253 LNPDEVTVSNILGAC--------------------FQT------------GRIDD---AG 277
             P ++T  +IL AC                    +Q             G+ +D   A 
Sbjct: 179 FIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSAR 238

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           ++F  I  +D V + TM+  Y Q    E+ + LF +M SE + PDK +  +++ +    +
Sbjct: 239 QVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPS 298

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
            L  G+ +H  AV  G++ D+ V +AL  M+ +CG    A         R+VV +N++I 
Sbjct: 299 MLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIA 358

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
             AQ+G   EA   Y ++  + +  +  T++SVL+AC  +     G+     IS V G +
Sbjct: 359 ALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV-GHS 417

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +     +I++  R  D+ +A +L  ++P K + + W+ +++  A + D
Sbjct: 418 SDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAGYARRED 466



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 179/377 (47%), Gaps = 41/377 (10%)

Query: 18   GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
            G    +  ++ ++  C     ++  K++ +H+  + YE +T  + N L+  Y+KSG +  
Sbjct: 683  GFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTG-VGNALISAYSKSGSMTD 741

Query: 78   ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
            AR +FDKMP RDI+SWN +                               IAG+A  G  
Sbjct: 742  ARKVFDKMPNRDIMSWNKM-------------------------------IAGYAQNGLG 770

Query: 138  REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
              ALQ   +MQ+       ++ VS LNAC+    L  GK++H +IV   + G+V V  AL
Sbjct: 771  GTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAAL 830

Query: 198  TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
              MYAK G +++A+ +FD    +N+V+WN MI+ Y ++G   K +D F  M   G+ PD 
Sbjct: 831  ISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDG 890

Query: 258  VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT----MIVG-YTQNGKEEDALILFN 312
             T ++IL AC  +G + +  R+F  ++ +  +  T      +VG   + G+ ++A  L N
Sbjct: 891  STFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLIN 950

Query: 313  EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            +M      PD     +++ +C    ++   +     A+ L   +   V   L ++Y   G
Sbjct: 951  QM---PFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNP-AVYVLLSNVYAAAG 1006

Query: 373  VTDDAWTVFNMMPTRNV 389
              DD   +  +M  R +
Sbjct: 1007 RWDDVAKIRRVMEGRGI 1023


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 275/712 (38%), Positives = 402/712 (56%), Gaps = 68/712 (9%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
            F +   TFL N LL  YAKSG+L  AR +FD+MP  ++ + NALLSA A S  V D+  
Sbjct: 41  TFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMER 100

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQLL 170
           LF  MP RD+VSYN  I GF++ G    ++Q++ + ++++   PT  T  + +   + L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN------------ 218
           D   G  +H +++    G   FV + L DMYAK G I  AR +F  M             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 219 -------------------NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                              +R+ ++W  M++G  +NG   + +D+F+ M+  G+  D+ T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKE---KDNV--------------------------- 289
             +IL AC     +++  ++   I     +DNV                           
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 290 -----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
                 WT MIVGY QN   E+A+  F+EM  + ++PD F++ SV+SSCA LASL  G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
            H  A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW +++ GYAQ G+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             E + L++K+L   LKPD  TF+ VLSAC  A L E+G ++FDS+   HGI P  DHY 
Sbjct: 461 AKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYT 520

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           CMI+L  RS    +A + IK +PH P++  W+TLLS C ++G+++ G+ AA +L E +P 
Sbjct: 521 CMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           N   Y++L +M+AA G+W +VA +R  M+ + VKK    SWI+  NKVH F ++D++HP 
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPF 640

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +  IYE+L  L  K+ E G+ P+   VLHD  + +KV  I +HSEKLA+A+ LI  P  +
Sbjct: 641 SSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEM 700

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PIRI+KN+RVC DCH   KF S I GR I++RD+ RFH F  G CSC D W
Sbjct: 701 -PIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 157/325 (48%), Gaps = 40/325 (12%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + + G    +  +  ++  C  +  +E  K++ +++   +YE N  F+ + L+  Y+K  
Sbjct: 269 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV-FVGSALVDMYSKCR 327

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  A  +F +M  R+IISW A+                               I G+  
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAM-------------------------------IVGYGQ 356

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
              S EA++ FS MQ D  +P D+T  S +++CA L  L  G Q H   +V  L   + V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  +Y K G I+ A  LFD M+  + VSW  +++GY + G+ K+ IDLF++M   GL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL 476

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDAL 308
            PD VT   +L AC + G ++     F  +++   +      +T MI  Y+++G+ ++A 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSC 333
               +M      PD F  ++++SSC
Sbjct: 537 EFIKQMPHS---PDAFGWATLLSSC 558


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 273/746 (36%), Positives = 425/746 (56%), Gaps = 73/746 (9%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           +++   YT  +  C    +    K+L   +      P T FL+N L++ Y K G L  AR
Sbjct: 2   SSSSNYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPET-FLYNNLINTYGKLGDLKNAR 60

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           ++FD +P  ++ SWN LLSA+++ G +QD++ +FD MP  D VS+N+ ++G+A  G   E
Sbjct: 61  NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISE 120

Query: 140 ALQVFSRMQKD---RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
           +++V++ M KD         ++ +  L++    +DL  G+QIHG+I        +FV + 
Sbjct: 121 SVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDL--GRQIHGQIFKFGYQSYLFVGSP 178

Query: 197 LTDMYAKGGEID-------------------------------KARWLFDRMNNRNLVSW 225
           L DMYAK G I+                               +A  LFD M  ++ +SW
Sbjct: 179 LVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISW 238

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL------ 279
             +I+G  +NG  K+ +D F+EM + G   D+ T  ++L AC     +D+  ++      
Sbjct: 239 TTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIR 298

Query: 280 -----------------------------FHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                        F  ++ K+ + WT M+VGY QNG  E+A+ +
Sbjct: 299 TDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRI 358

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F +M   ++ PD F++ SV+SSCA LASL  G   HG+A+  G+   + VS+ALI +Y K
Sbjct: 359 FCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGK 418

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  + A  +F+ M  R+ VSW ++++GYAQ G+  E ++L++ +L   + PD  TFV V
Sbjct: 419 CGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGV 478

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC  A L E+G ++F+ +   H ITP  DHY CMI+LL R+  +++A + I  +P  P
Sbjct: 479 LSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSP 538

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           +++ W+TLLS C + G+++ G+ AA  L +LEP N   YI+LS++YAA G+W+DVA +R 
Sbjct: 539 DAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRK 598

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+   VKK   +SWI+  NKVH F ++DR+ P ++ IY +L  L  K+ E G+ P+   
Sbjct: 599 GMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSF 658

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VLHD ++ EK+K + +HSEKLA+A+ L+  P G+  IR++KN+RVCGDCH   K+ S I 
Sbjct: 659 VLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQ-IRVVKNLRVCGDCHNATKYISRIT 717

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
            R I++RD+ RFH F  G CSC D W
Sbjct: 718 QREILVRDAVRFHLFKDGVCSCGDFW 743


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/709 (38%), Positives = 403/709 (56%), Gaps = 69/709 (9%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P+ T+L N LL  YA SG L +AR +FD MP R++++ N+LLSA AR+G V+D+  LF  
Sbjct: 43  PSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAGLVRDMERLFTS 102

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR--FEPTDYTHVSALNACAQLLDLR 173
           +P RD+VSYN  +AGF+  G    A   +  + +D     P+  T    +   + L D  
Sbjct: 103 LPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGVVMVASALGDRA 162

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV---------- 223
            G+Q+H +I+    G   F  + L DMYAK G I  AR +FD M  +N+V          
Sbjct: 163 LGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLL 222

Query: 224 ---------------------SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                                +W  M++G  +NG   + +D+F+ M+  G+  D+ T  +
Sbjct: 223 RCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGS 282

Query: 263 ILGACFQTGRIDDAGRL-----------------------------------FHVIKEKD 287
           IL AC     +++  ++                                   F  +  K+
Sbjct: 283 ILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKN 342

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + WT MIVGY QNG  E+A+ +F+EM  + ++PD F++ SV+SSCA LASL  G   H 
Sbjct: 343 IISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHC 402

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW +++ GYAQ G+  E
Sbjct: 403 LALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKE 462

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            + L++K+L + +KPD  TF+ VLSAC  + L ++G+++F S+   H I P  DHY CMI
Sbjct: 463 TIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMI 522

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L  RS  + +A + IK +P  P++  W+TLLS C ++GD++ G+ AA +L +L+P N  
Sbjct: 523 DLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPA 582

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++L +M+A+ G W DVA +R  M+ + VKK    SWI+  NKVH F ++D++HP +  
Sbjct: 583 SYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRT 642

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IYE+L  L  K+ E G+ P+   VLHD  + EKV  + +HSEKLA+A+ LI  P  + PI
Sbjct: 643 IYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEM-PI 701

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI+KN+RVC DCH   KF S I GR I++RD+ RFH F  G CSC D W
Sbjct: 702 RIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  503 bits (1296), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/709 (38%), Positives = 410/709 (57%), Gaps = 69/709 (9%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P  T+L N LL  Y K+G+   AR +FD MP  ++ ++NALLS  A +  + D+ ALF  
Sbjct: 38  PPPTYLLNHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFAS 97

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDR-FEPTDYTHVSALNACAQLLDLR 173
           M  RD VSYN  IAGF+  G   +A++V+ + +Q D    P+  T  + + A + L D  
Sbjct: 98  MTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRA 157

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG----------EID--------------- 208
            GKQ H +I+    G N FV + L DMYAK            E+D               
Sbjct: 158 LGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLL 217

Query: 209 ------KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                 +AR LF+ M +R+ ++W  M++G+ +NG   + +++F+ M+  G+  D+ T  +
Sbjct: 218 RCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGS 277

Query: 263 ILGAC-----FQTG----------RIDD--------------------AGRLFHVIKEKD 287
           IL AC      + G          R DD                    A  +F  +  K+
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKN 337

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + WT +IVGY QNG  E+A+ +F+EM  + + PD +++ SV+SSCA LASL  G   H 
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHC 397

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW ++++GYAQ G+  E
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKE 457

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            + L++K+L + +KPD  TF+ VLSAC  A   E+G+++F S+   HGI P  DHY CMI
Sbjct: 458 TIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L  RS  + +A + IK +P  P+++ W TLLS C ++GD++ G+ AA +L E++P N  
Sbjct: 518 DLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPA 577

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++L +M+AA G+W +VA +R  M+ + VKK    SWI+  NKVH F ++D++HP ++ 
Sbjct: 578 SYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKG 637

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IYE+L  L  K+ E G+ P+   VLHD  + +KV  + +HSEKLA+A+ LI  P  + PI
Sbjct: 638 IYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEM-PI 696

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI+KN+RVC DCH   KF S I GR I++RD+ RFH F  G CSC D W
Sbjct: 697 RIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/424 (28%), Positives = 210/424 (49%), Gaps = 51/424 (12%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + +V+  + + D  L K+    + L        F+ + L+  YAK   +  A+  FD++ 
Sbjct: 144 STMVMAASALGDRALGKQFHCQI-LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVD 202

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++++ +N +++   R   V++ R LF+ M  RDS+++ T + GF   G   EAL++F R
Sbjct: 203 SKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRR 262

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+        YT  S L AC  L  L +GKQIH  I+      NVFV +AL DMY+K   
Sbjct: 263 MRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRS 322

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           I  A  +F RM  +N++SW  +I GY +NG  ++ + +F EMQ  G++PD+ T+ +++ +
Sbjct: 323 IKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISS 382

Query: 267 CF-----------------------------------QTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G I+DA RLF  +   D V W
Sbjct: 383 CANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSW 442

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA------SLYHG-QV 344
           T ++ GY Q G+ ++ + LF +ML++ V+PD  +   V+S+C++        S +H  Q 
Sbjct: 443 TALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQK 502

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNG 403
            HG   ++ +DD     + +ID+Y + G   +A      MP   + + W ++++     G
Sbjct: 503 DHG---IVPIDDHY---TCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRG 556

Query: 404 QDLE 407
            D+E
Sbjct: 557 -DME 559


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 274/712 (38%), Positives = 400/712 (56%), Gaps = 68/712 (9%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
            F +   TFL N LL  YAKSG+L  AR +FD+MP  ++ + NALLSA A S  V D+  
Sbjct: 41  TFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMER 100

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQLL 170
           LF  MP RD+VSYN  I GF++ G    ++Q++ + ++++   PT  T  + +   + L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN------------ 218
           D   G  +H +++    G   FV + L DMYAK G I  AR +F  M             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 219 -------------------NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                              +R+ ++W  M++G  +NG   + +D+F+ M+  G+  D+ T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKE---KDNV--------------------------- 289
             +IL AC      ++  ++   I     +DNV                           
Sbjct: 281 FGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 290 -----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
                 WT MIVGY QN   E+A+  F+EM  + ++PD F++ SV+SSCA LASL  G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
            H  A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW +++ GYAQ G+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             E + L++K+L   LKPD  TF+ VLSAC  A L E+G ++FDS+   H I P  DHY 
Sbjct: 461 AKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYT 520

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           CMI+L  RS    +A + IK +PH P++  W+TLLS C ++G+++ G+ AA +L E +P 
Sbjct: 521 CMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           N   Y++L +M+AA G+W +VA +R  M+ + VKK    SWI+  NKVH F ++D++HP 
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPF 640

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +  IYE+L  L  K+ E G+ P+   VLHD  + +KV  I +HSEKLA+A+ LI  P  +
Sbjct: 641 SSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEM 700

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PIRI+KN+RVC DCH   KF S I GR I++RD+ RFH F  G CSC D W
Sbjct: 701 -PIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 158/325 (48%), Gaps = 40/325 (12%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + + G    +  +  ++  C  +   E  K++ +++   +YE N  F+ + L+  Y+K  
Sbjct: 269 MRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNV-FVGSALVDMYSKCR 327

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  A  +F +M  R+IISW A+                               I G+  
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAM-------------------------------IVGYGQ 356

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
              S EA++ FS MQ D  +P D+T  S +++CA L  L  G Q H   +V  L   + V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  +Y K G I+ A  LFD M+  + VSW  +++GY + G+ K+ IDLF++M + GL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGL 476

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDAL 308
            PD VT   +L AC + G ++     F  +++  ++      +T MI  Y+++G+ ++A 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSC 333
               +M      PD F  ++++SSC
Sbjct: 537 EFIKQMPHS---PDAFGWATLLSSC 558


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 267/682 (39%), Positives = 416/682 (60%), Gaps = 47/682 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           T+   T ++  C  V  + + +++ S +    L+ Y      + N LL+ YAKSG    A
Sbjct: 144 TQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSY----ISVANSLLNMYAKSGDPVTA 199

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           + +FD+M L+   SWN ++S+H +SG V   +  F++M  RD VS+N  I+G+   GF R
Sbjct: 200 KIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDR 259

Query: 139 EALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           EAL +FS+M  D   +P  +T  SAL+ACA L +L+ GKQIH  I+         V NAL
Sbjct: 260 EALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNAL 319

Query: 198 TDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
             MY+K G ++ A+ + ++  ++N +++++  ++ GY+K                     
Sbjct: 320 ISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVK--------------------- 358

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                          G I+ A R+F  ++ +D V WT MIVGY QNG  +DA+ LF  M+
Sbjct: 359 --------------LGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E  +P+ +++++++S  + LASL HG+ +H  A   G    + VS+ALI MY K G  +
Sbjct: 405 KEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSIN 464

Query: 376 DAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           DA  VFN++   R+ ++W SMI   AQ+G   EAL L++++L+  +KPD  T+V VLSAC
Sbjct: 465 DARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSAC 524

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H  L E+G+++++ +   H I P+  HYACMI+L GR+  + +A   I+++P +P+ + 
Sbjct: 525 THVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIA 584

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W +LL+ C +  +++  E+AA  L  +EP N+G Y  L+N+Y+ACG+WE+ A+IR SMK 
Sbjct: 585 WGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKD 644

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           K VKK   +SW++I NKVH F  +D  HP+ + IYE ++K+ K++++ GF P+T+ VLHD
Sbjct: 645 KGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHD 704

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
            +EE K + + +HSEKLA+A+ LI  P   T +RIMKN+RVC DCH  +KF S ++GR I
Sbjct: 705 LEEELKEQILSHHSEKLAIAFGLICTPENTT-LRIMKNLRVCNDCHSAIKFISKLVGREI 763

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           I+RD+ RFHHF  G CSC+D W
Sbjct: 764 IVRDATRFHHFKNGLCSCRDYW 785



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 136/482 (28%), Positives = 241/482 (50%), Gaps = 70/482 (14%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            FL N L++FYAK+G ++ A  +FD+MP++ + SWN +LS +A+ G +++   +F++MP 
Sbjct: 48  VFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPE 107

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            DSVS+   I G+   G    A+ +F  M  D   PT +T  + L +CA +  L  G+++
Sbjct: 108 PDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKV 167

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +V   L   + V N+L +MYAK G+   A+ +FDRM  ++  SWN MIS ++++G  
Sbjct: 168 HSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSG-- 225

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
              +DL Q                                 F  + E+D V W  MI GY
Sbjct: 226 --LVDLAQVQ-------------------------------FEQMIERDVVSWNAMISGY 252

Query: 299 TQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD- 356
            Q+G + +AL +F++ML +   +PDKF+++S +S+CA L +L  G+ +H   +    D  
Sbjct: 253 NQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTF 312

Query: 357 --------------------------------DLLVSSALIDMYCKCGVTDDAWTVFNMM 384
                                           D++  +AL+D Y K G  + A  +F+ +
Sbjct: 313 GAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSL 372

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R+VV+W +MI GY QNG + +A+ L+  +++E  KP+++T  ++LS        + G+
Sbjct: 373 RVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGR 432

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
               + +   G   S+     +I +  +S  ++ A  +   +  K +++ W++++   A 
Sbjct: 433 -QIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQ 491

Query: 505 KG 506
            G
Sbjct: 492 HG 493



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/408 (30%), Positives = 195/408 (47%), Gaps = 90/408 (22%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+D  + S L    +  D   GK IH +I+   L   VF+ N L + YAK G I  A  +
Sbjct: 12  PSD-PYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRV 70

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  +++ SWN+++SGY K G+ ++   +F+EM                         
Sbjct: 71  FDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEM------------------------- 105

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                      E D+V WT MIVGY Q G+ E+A+ +F EM+S+DV P +F++++V++SC
Sbjct: 106 ----------PEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASC 155

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK----------------------- 370
           A +  L  G+ VH   V  G+   + V+++L++MY K                       
Sbjct: 156 AAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWN 215

Query: 371 --------CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLK 421
                    G+ D A   F  M  R+VVSWN+MI+GY Q+G D EAL ++ K+L + + K
Sbjct: 216 TMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSK 275

Query: 422 PDSFTFVSVLSACLHADLFERGQ--------NHFDSISAVHGITPSLDHYACMINLLGRS 473
           PD FT  S LSAC + +  + G+          FD+  AV            +I++  +S
Sbjct: 276 PDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGN---------ALISMYSKS 326

Query: 474 SDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
             V+ A  +I +S+    + + ++ LL      GDI      AR +F+
Sbjct: 327 GGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDIN----PARRIFD 370


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/682 (39%), Positives = 406/682 (59%), Gaps = 47/682 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQS---HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           T+   T ++  C       + K++ S    + L+   P    + N LL+ YAK+G L  A
Sbjct: 106 TQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVP----VANSLLNMYAKTGDLKMA 161

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           + +FD+M LR+  SWNA++S H   G V    A F+ +  RD VS+N+ IAG    GF  
Sbjct: 162 KVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDN 221

Query: 139 EALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           EALQ FS + KD   +P  ++  SAL+ACA L  L  GKQIHG IV      +  V NAL
Sbjct: 222 EALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNAL 281

Query: 198 TDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
             MYAK G ++ AR + ++  +++ +++++  +++GY+K                     
Sbjct: 282 ISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVK--------------------- 320

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                          G I  A ++F+ +K+ D V WT MIVGY QNG   DA+ +F  M+
Sbjct: 321 --------------LGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           SE  RP+ F++++++S+ + + SL HG+ +H  A+  G      V +AL  MY K G  +
Sbjct: 367 SEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSIN 426

Query: 376 DAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            A  VFN++   R+ VSW SMI   AQ+G   EA+ L++++L   +KPD  T+V VLSAC
Sbjct: 427 GARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSAC 486

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H  L E+G+++FD +  VH I P+L HYACM++L GR+  + +A   ++++P +P+ + 
Sbjct: 487 THGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIA 546

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W +LLS C +  ++   ++AA  L  +EP N+G Y  L+N+Y++CG+W+D A IR  MK+
Sbjct: 547 WGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKA 606

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           + VKK    SW++I NK H F  ED  HP+ + IY+ + K+ K++++ GF+P+T+ VLHD
Sbjct: 607 RGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHD 666

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
            + E K + + YHSEKLA+A+ +I  P   T +RIMKN+RVC DCH  +KF S ++ R I
Sbjct: 667 LEVEVKDQILRYHSEKLAIAFGIISTPENTT-LRIMKNLRVCNDCHNAIKFISKLVDREI 725

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           I+RD+ RFHHF  G+CSCKD W
Sbjct: 726 IVRDATRFHHFKDGSCSCKDYW 747



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 159/540 (29%), Positives = 262/540 (48%), Gaps = 77/540 (14%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           + +L N L++ YAK+G    A DLF++MP++   SWN +LS +A+ G ++    +FD +P
Sbjct: 9   SVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           +RDSVS+ T I G+   G   +A+++F  M KD+  PT +T  + L +CA       GK+
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  +V   L   V V N+L +MYAK G++  A+ +FDRM  RN  SWN MIS ++    
Sbjct: 129 VHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHM---- 184

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            GR+D A   F ++ E+D V W +MI G
Sbjct: 185 -------------------------------NCGRVDLALAQFELLSERDIVSWNSMIAG 213

Query: 298 YTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
             Q+G + +AL  F+ +L +  ++PD+FS++S +S+CA L  L  G+ +HG  V    D 
Sbjct: 214 CNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDA 273

Query: 357 DLLVSSALIDMYCK-------------CGVTD--------------------DAWTVFNM 383
              V +ALI MY K              G++D                     A  +FN 
Sbjct: 274 SGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNS 333

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +   +VV+W +MI GY QNG + +A+ ++  ++ E  +P+SFT  ++LSA         G
Sbjct: 334 LKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHG 393

Query: 444 -QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            Q H  +I +   ++PS+ +   +  +  ++  ++ A  +   L    +++ W++++   
Sbjct: 394 KQIHASAIRSGEALSPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMAL 451

Query: 503 AMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACGRWEDVASIRSSMK-SKNVKKF 560
           A  G    GE A     ++  +   P +I    + +AC     V   RS     KNV K 
Sbjct: 452 AQHG---LGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKI 508



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 150/344 (43%), Gaps = 85/344 (24%)

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE--- 304
           M  LGL      ++N++    +TG   DA  LF+ +  K    W T++ GY + GK    
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 305 ----------------------------EDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
                                       EDA+ +F +M+ + V P +F++++V++SCA  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK-------------------------- 370
            S   G+ VH   V LG+   + V+++L++MY K                          
Sbjct: 121 GSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI 180

Query: 371 -----CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDS 424
                CG  D A   F ++  R++VSWNSMI G  Q+G D EAL  +  +L++ +LKPD 
Sbjct: 181 SLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDR 240

Query: 425 FTFVSVLSACLHADLFERGQ--------NHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           F+  S LSAC + +    G+          FD+  AV            +I++  +S  V
Sbjct: 241 FSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGN---------ALISMYAKSGGV 291

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA-ARHLF 519
           + A  +I+        +I  T L    + G +K G++  AR +F
Sbjct: 292 EIARRIIEQSGISDLDVIAFTAL----LNGYVKLGDITPARQIF 331


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 256/661 (38%), Positives = 385/661 (58%), Gaps = 37/661 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK  ++R + +     D     AL+  +A+ GS +D R +F+K+  RD +++NT I G
Sbjct: 244 KWGKAVHSR-ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGG 302

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
            A  G+  EA +V+++MQ++   P   T+V  LNAC     L  GK+IH ++       +
Sbjct: 303 LAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSD 362

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V+NAL  MY++ G I  AR +FD+M  ++++SW  MI G  K+G   + + ++QEMQ 
Sbjct: 363 IGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQ 422

Query: 251 LGLNPDEVTVSNILGACFQT-----------------------------------GRIDD 275
            G+ P+ VT ++IL AC                                      G + D
Sbjct: 423 AGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKD 482

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  + ++D V +  MI GY  +   ++AL LF+ +  E ++PDK +  +++++CA 
Sbjct: 483 ARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACAN 542

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
             SL   + +H      G   D  V +AL+  Y KCG   DA  VF  M  RNV+SWN++
Sbjct: 543 SGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAI 602

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I G AQ+G+  +AL L++++  E +KPD  TFVS+LSAC HA L E G+ +F S+S    
Sbjct: 603 IGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFA 662

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           I P+++HY CM++LLGR+  +D+A  LIK++P + N+ IW  LL  C + G++   E AA
Sbjct: 663 IIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAA 722

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
               +L+  NA  Y+ LS+MYAA G W+  A +R  M+ + V K    SWI++ +K+H F
Sbjct: 723 ESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYF 782

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           V+EDR+HP++E IY EL +L   ++  G+ P+T+ V+HD  E EK  ++C+HSE+LA+AY
Sbjct: 783 VAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAY 842

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            LI  P G T I I KN+RVC DCH   KF S I+ R II RD NRFHHF  G CSC D 
Sbjct: 843 GLISTPPG-TRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDY 901

Query: 696 W 696
           W
Sbjct: 902 W 902



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 240/459 (52%), Gaps = 40/459 (8%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T  ++  +V+   +   +E A +L   M  +   P+ T + +  L      G L + R++
Sbjct: 90  TVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMS-FLSSCKSPGALEWGREI 148

Query: 82  -FDKMP---LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
            F  M    L D+   N +L+ +A+ GS+++ R +FDKM  +  VS+   I G+A+ G S
Sbjct: 149 HFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRS 208

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
             A ++F +M+++   P   T++S LNA +    L+ GK +H +I+      +  V  AL
Sbjct: 209 ETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTAL 268

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MYAK G     R +F+++ NR+L++WN MI G  + G  ++  +++ +MQ  G+ P++
Sbjct: 269 VKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNK 328

Query: 258 VTVSNILGACFQT-----------------------------------GRIDDAGRLFHV 282
           +T   +L AC  +                                   G I DA  +F  
Sbjct: 329 ITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDK 388

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +  KD + WT MI G  ++G   +AL ++ EM    V P++ + +S++++C+  A+L  G
Sbjct: 389 MVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWG 448

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H + V  G+  D  V + L++MY  CG   DA  VF+ M  R++V++N+MI GYA +
Sbjct: 449 RRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAH 508

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
               EAL L+D+L +E LKPD  T++++L+AC ++   E
Sbjct: 509 NLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLE 547



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 156/629 (24%), Positives = 278/629 (44%), Gaps = 115/629 (18%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +  L  +G       Y +++  C  V D+   +++  H+  +   P+  +  N L++ Y 
Sbjct: 11  VQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQ-YTVNALINMYI 69

Query: 71  KSGKLFYARDLFDKMPL--RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           + G +  AR ++ K+    R + SWNA+                               +
Sbjct: 70  QCGSIEEARQVWKKLSYMERTVHSWNAM-------------------------------V 98

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
            G+   G+  +AL++  +MQ+    P   T +S L++C     L  G++IH + +   L 
Sbjct: 99  VGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLL 158

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +V V N + +MYAK G I++AR +FD+M  +++VSW + I GY   G+ +   ++FQ+M
Sbjct: 159 FDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKM 218

Query: 249 QLLGLNPDEVTV--------------------SNILGACFQT---------------GRI 273
           +  G+ P+ +T                     S IL A  ++               G  
Sbjct: 219 EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSY 278

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            D  ++F  +  +D + W TMI G  + G  E+A  ++N+M  E V P+K +   ++++C
Sbjct: 279 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNAC 338

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
              A+L+ G+ +H +    G   D+ V +ALI MY +CG   DA  VF+ M  ++V+SW 
Sbjct: 339 VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWT 398

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFER 442
           +MI G A++G   EAL +Y ++ Q  ++P+  T+ S+L+AC           +H  + E 
Sbjct: 399 AMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA 458

Query: 443 G-----------QNHFDSISAVHGITPSLDH--------YACMINLLGRSSDVDKAVDLI 483
           G            N +    +V       D         Y  MI      +   +A+ L 
Sbjct: 459 GLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLF 518

Query: 484 KSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI-------MLS 533
             L     KP+ + +  +L+ CA  G ++     AR +  L  +  G +         L 
Sbjct: 519 DRLQEEGLKPDKVTYINMLNACANSGSLEW----AREIHTL--VRKGGFFSDTSVGNALV 572

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           + YA CG + D + +   M  +NV  + A
Sbjct: 573 STYAKCGSFSDASIVFEKMTKRNVISWNA 601



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 247/539 (45%), Gaps = 87/539 (16%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A+ V   +Q+   +     ++  L  C ++ DL  G+Q+H  I+      + +  NAL +
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 200 MYAKGGEIDKARWLFDRMN--NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
           MY + G I++AR ++ +++   R + SWN M+ GY++ G  +K + L ++MQ  GL PD 
Sbjct: 67  MYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDR 126

Query: 258 VTVSNILGAC-------------FQT----------------------GRIDDAGRLFHV 282
            T+ + L +C             FQ                       G I++A  +F  
Sbjct: 127 TTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDK 186

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +++K  V WT  I GY   G+ E A  +F +M  E V P++ +  SV+++ +  A+L  G
Sbjct: 187 MEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWG 246

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + VH + +  G + D  V +AL+ MY KCG   D   VF  +  R++++WN+MI G A+ 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG------------------Q 444
           G   EA  +Y+++ +E + P+  T+V +L+AC+++     G                  Q
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 445 NHFDSISAVHG------------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---K 489
           N   S+ +  G            +   +  +  MI  L +S    +A+ + + +     +
Sbjct: 367 NALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVE 426

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASI 548
           PN + ++++L+ C+    ++ G    + + E     +A     L NMY+ CG  +D   +
Sbjct: 427 PNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQV 486

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
              M  +++  + A         +  + + +        + +E  KL  +LQE G  P+
Sbjct: 487 FDRMIQRDIVAYNAM--------IGGYAAHN--------LGKEALKLFDRLQEEGLKPD 529


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 252/623 (40%), Positives = 371/623 (59%), Gaps = 40/623 (6%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR LFD+M  RD +SW  +++ + R+G +   R   D M  +  V++N  I+G+ + GF 
Sbjct: 213 ARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFF 272

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG----NLGGNVFV 193
            EAL++F +M     +  ++T+ S L+ACA       GKQ+H  I+      +L  ++ V
Sbjct: 273 LEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSV 332

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  +Y K G++D+AR +F++M  ++LVSWN ++SGY+                    
Sbjct: 333 NNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYV-------------------- 372

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                            GRID+A   F  + E++ + WT MI G  QNG  E++L LFN 
Sbjct: 373 ---------------NAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNR 417

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M SE   P  ++ +  + +CA LA+L HG+ +H + V LG D  L   +ALI MY KCGV
Sbjct: 418 MKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGV 477

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A  +F  MP  + VSWN+MI    Q+G   +AL L++ +L+E++ PD  TF++VLS 
Sbjct: 478 VEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLST 537

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L E G  +F S+S ++GI P  DHYA MI+LL R+    +A D+I+++P +P   
Sbjct: 538 CSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPP 597

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IW  LL+ C + G++  G  AA  LFEL P + G Y++LSNMYA  GRW+DVA +R  M+
Sbjct: 598 IWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMR 657

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            K VKK    SWIE++NKVH F+ +D  HPE + +Y  L +L  K+++ G+ P+TK VLH
Sbjct: 658 DKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLH 717

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D + E+K   +  HSEKLA+ + L+K P G T +R+ KN+R+CGDCH   KF S ++ R 
Sbjct: 718 DMESEQKEYVLSTHSEKLAVGFGLLKLPLGAT-VRVFKNLRICGDCHNAFKFMSKVVERE 776

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I++RD  RFHHF  G CSC + W
Sbjct: 777 IVVRDGKRFHHFKNGECSCGNYW 799



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 8/316 (2%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF---LHNRLLHFYA 70
           +Y  G    E  YT ++  C         K++ +++      P+  F   ++N L   Y 
Sbjct: 282 MYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYW 341

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK+  AR +F++MP++D++SWNA+LS +  +G + + ++ F++MP R+ +++   I+G
Sbjct: 342 KCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISG 401

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
            A  GF  E+L++F+RM+ + FEP DY    A+ ACA L  L  G+Q+H ++V      +
Sbjct: 402 LAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSS 461

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           +   NAL  MYAK G ++ A  LF  M   + VSWN MI+   ++G   + ++LF+ M  
Sbjct: 462 LSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLK 521

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEE 305
             + PD +T   +L  C   G +++  R F  +     +C     +  MI    + GK  
Sbjct: 522 EDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFS 581

Query: 306 DALILFNEMLSEDVRP 321
           +A  +   M  E   P
Sbjct: 582 EAKDMIETMPVEPGPP 597



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 170/430 (39%), Gaps = 85/430 (19%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            + +H  ++        ++ N L D+Y K  ++  A  LFD +   ++V+   +I+ +  
Sbjct: 34  ARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSS 93

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
            G      ++F               +  LG                    +D VC+  M
Sbjct: 94  AGNSNLAREIF--------------FATPLGI-------------------RDTVCYNAM 120

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLG 353
           I GY+ N     A+ LF ++L    RPD F+ +SV+ + A +       Q +H   V  G
Sbjct: 121 ITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSG 180

Query: 354 VDDDLLVSSALIDMYCKC----------------------------------------GV 373
                 V +AL+ ++ KC                                        G 
Sbjct: 181 SGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGE 240

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D A    + M  + VV+WN+MI+GY  +G  LEAL ++ K+    ++ D FT+ SVLSA
Sbjct: 241 LDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSA 300

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG----RSSDVDKAVDLIKSLPHK 489
           C +A  F  G+     I       PSLD    + N L     +   VD+A  +   +P K
Sbjct: 301 CANAGFFLHGKQVHAYILRTEP-RPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVK 359

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASI 548
            + + W+ +LS     G I      A+  FE  P  N   + ++ +  A  G  E+   +
Sbjct: 360 -DLVSWNAILSGYVNAGRIDE----AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKL 414

Query: 549 RSSMKSKNVK 558
            + MKS+  +
Sbjct: 415 FNRMKSEGFE 424


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/662 (39%), Positives = 398/662 (60%), Gaps = 32/662 (4%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F  N +L  YA++ +L  AR LFD MP +D++SWNA+LS + RSG V + R +FD+MP +
Sbjct: 96  FSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK 155

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-------YTHVSALNACAQLLD- 171
           +S+S+N  +A +   G   EA ++F    K  +E          Y   + L    QL D 
Sbjct: 156 NSISWNGLLAAYVRSGRLEEARRLFE--SKSDWELISCNCLMGGYVKRNMLGDARQLFDQ 213

Query: 172 ------LRRGKQIHGKIVVGNLGG-----------NVFVRNALTDMYAKGGEIDKARWLF 214
                 +     I G    G+L             +VF   A+   Y + G +D+AR +F
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D M  +  +S+N+MI+GY +  +     +LF+EM    +    + +S   G C Q G + 
Sbjct: 274 DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMIS---GYC-QNGDLA 329

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A  LF ++ ++D+V W  +I GY QNG  E+A+ +  EM  +    ++ +    +S+CA
Sbjct: 330 QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACA 389

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            +A+L  G+ VHG+ V  G +   LV +AL+ MYCKCG  D+A+ VF  +  +++VSWN+
Sbjct: 390 DIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNT 449

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           M+ GYA++G   +AL +++ ++   +KPD  T V VLSAC H  L +RG  +F S++  +
Sbjct: 450 MLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDY 509

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           GITP+  HYACMI+LLGR+  +++A +LI+++P +P++  W  LL    + G+++ GE A
Sbjct: 510 GITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQA 569

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  +F++EP N+G Y++LSN+YAA GRW DV+ +R  M+   V+K   YSW+E+ NK+H 
Sbjct: 570 AEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHT 629

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F   D  HPE   IY  L +L  K++  G+  +TKLVLHD +EEEK   + YHSEKLA+A
Sbjct: 630 FTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVA 689

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + ++  P G  PIR+MKN+RVC DCH  +K  S I+GR II+RDS+R+HHF  G CSC+D
Sbjct: 690 FGILTMPSG-KPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRD 748

Query: 695 NW 696
            W
Sbjct: 749 YW 750



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 226/497 (45%), Gaps = 89/497 (17%)

Query: 43  KRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHAR 102
           +R  ++   +F +P+T     + +  + ++G    A  +FD MPLR+ +S+NA++S + R
Sbjct: 18  QRPTNYPKPHFEDPHTVKC-TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLR 76

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           +      R LFDKMP +D  S+N  + G+A     R+A  +F  M +             
Sbjct: 77  NAKFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK------------ 124

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
                                      +V   NA+   Y + G +D+AR +FDRM ++N 
Sbjct: 125 ---------------------------DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNS 157

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
           +SWN +++ Y+++G+ ++   LF+      L    ++ + ++G   +   + DA +LF  
Sbjct: 158 ISWNGLLAAYVRSGRLEEARRLFESKSDWEL----ISCNCLMGGYVKRNMLGDARQLFDQ 213

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNE--------------------MLSE----- 317
           I  +D + W TMI GY Q+G    A  LF E                    ML E     
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 318 DVRPDK--FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           D  P K   S + +++  A+   +  G+ +  +     +       + +I  YC+ G   
Sbjct: 274 DEMPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS----WNIMISGYCQNGDLA 329

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+MMP R+ VSW ++I GYAQNG   EA+ +  ++ ++    +  TF   LSAC 
Sbjct: 330 QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACA 389

Query: 436 HADLFERGQNHFDSISAVHG-ITPSLDHYACMIN--LLG---RSSDVDKAVDLIKSLPHK 489
                E G+        VHG +  +     C++   L+G   +   +D+A D+ + + HK
Sbjct: 390 DIAALELGKQ-------VHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK 442

Query: 490 PNSLIWSTLLSVCAMKG 506
            + + W+T+L+  A  G
Sbjct: 443 -DIVSWNTMLAGYARHG 458


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/644 (39%), Positives = 372/644 (57%), Gaps = 37/644 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI    AL++   R G V   +  F  +  RD V YN  IA  A  G + EA + + RM+
Sbjct: 263 DIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMR 322

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            D       T++S LNAC+    L  GK IH  I       +V + NAL  MYA+ G++ 
Sbjct: 323 SDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLP 382

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR LF  M  R+L+SWN +I+GY +     + + L+++MQ  G+ P  VT  ++L AC 
Sbjct: 383 KARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACA 442

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            +                                   G + +A  +F   + +D + W +
Sbjct: 443 NSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNS 502

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI G+ Q+G  E A  LF EM +E++ PD  + +SV+S C    +L  G+ +HG+    G
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+ + +ALI+MY +CG   DA  VF+ +  R+V+SW +MI G A  G+D++A+ L+ 
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 414 KLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           ++  E  +P D  TF S+LSAC HA L   G   F S+ + +G+ P+++HY C++ LLGR
Sbjct: 623 QMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGR 682

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +    +A  LI  +P  P++ +W TLL  C + G+I   E AA +  +L   N   YI+L
Sbjct: 683 ARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILL 742

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YAA GRW+DVA IR  M+ + ++K    SWIE+DN +H+F++ DR+HPET  IY EL
Sbjct: 743 SNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAEL 802

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L  +++EAG+ P+T+ VLHD  +  +  S+C HSE+LA+AY LIK P G TPIRI KN
Sbjct: 803 KRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPG-TPIRIFKN 861

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+CGDCH   KF S ++GR II RDSNRFH F  G CSC+D W
Sbjct: 862 LRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 167/629 (26%), Positives = 288/629 (45%), Gaps = 119/629 (18%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           +T   R        Y  L+ +CTR   +  AKR+ + M      P+  FL N L++ Y K
Sbjct: 16  NTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDI-FLSNLLINMYVK 74

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
              +  A  +F +MP RD+ISWN+L+S                                +
Sbjct: 75  CRSVLDAHQVFKEMPRRDVISWNSLISC-------------------------------Y 103

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
           A +GF ++A Q+F  MQ   F P   T++S L AC    +L  GK+IH +I+      + 
Sbjct: 104 AQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDP 163

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V+N+L  MY K G++ +AR +F  ++ R++VS+N M+  Y +    K+C+ LF +M   
Sbjct: 164 RVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSE 223

Query: 252 GLNPDEVTVSNILGA-----------------------------------CFQTGRIDDA 276
           G++PD+VT  N+L A                                   C + G +D A
Sbjct: 224 GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            + F  I ++D V +  +I    Q+G   +A   +  M S+ V  ++ +  S++++C+  
Sbjct: 284 KQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTS 343

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            +L  G+++H      G   D+ + +ALI MY +CG    A  +F  MP R+++SWN++I
Sbjct: 344 KALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAII 403

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERG-- 443
            GYA+     EA+ LY ++  E +KP   TF+ +LSAC           +H D+   G  
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463

Query: 444 ----------------------QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
                                 QN F+   A   I+     +  MI    +    + A  
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS-----WNSMIAGHAQHGSYETAYK 518

Query: 482 LIKSLPH---KPNSLIWSTLLSVC----AMK-GDIKHGEMAARHLFELEPINAGPYIMLS 533
           L + + +   +P+++ ++++LS C    A++ G   HG +    L +L+ +N G  ++  
Sbjct: 519 LFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGL-QLD-VNLGNALI-- 574

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           NMY  CG  +D  ++  S++ ++V  + A
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTA 603



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 142/571 (24%), Positives = 243/571 (42%), Gaps = 101/571 (17%)

Query: 145 SRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           S   + R   TD  T+V+ L  C +   L   K+IH ++V   +G ++F+ N L +MY K
Sbjct: 15  SNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVK 74

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
              +  A  +F  M  R+++SWN +IS Y + G  KK   LF+EMQ  G  P+++T  +I
Sbjct: 75  CRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISI 134

Query: 264 LGACFQTGRIDD-----------------------------------AGRLFHVIKEKDN 288
           L AC+    +++                                   A ++F  I  +D 
Sbjct: 135 LTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDV 194

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V + TM+  Y Q    ++ L LF +M SE + PDK +  +++ +    + L  G+ +H  
Sbjct: 195 VSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKL 254

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            V  G++ D+ V +AL+ M  +CG  D A   F  +  R+VV +N++I   AQ+G ++EA
Sbjct: 255 TVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEA 314

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
              Y ++  + +  +  T++S+L+AC  +   E G+     IS   G +  +     +I+
Sbjct: 315 FEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISE-DGHSSDVQIGNALIS 373

Query: 469 LLGRSSDVDKAVDLIKSLPH----------------------------------KPNSLI 494
           +  R  D+ KA +L  ++P                                   KP  + 
Sbjct: 374 MYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT 433

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSM 552
           +  LLS CA       G+M    +     I +  ++   L NMY  CG   +  ++    
Sbjct: 434 FLHLLSACANSSAYADGKMIHEDILR-SGIKSNGHLANALMNMYRRCGSLMEAQNVFEGT 492

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           ++++V      SW       +  ++    H   E  Y    KL +++Q     P      
Sbjct: 493 QARDV-----ISW-------NSMIAGHAQHGSYETAY----KLFQEMQNEELEP------ 530

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
            D      V S C + E L L     K+ HG
Sbjct: 531 -DNITFASVLSGCKNPEALELG----KQIHG 556



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 154/335 (45%), Gaps = 41/335 (12%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L N L++ Y + G L  A+++F+    RD+ISWN++++ HA+ G                
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG---------------- 511

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             SY T             A ++F  MQ +  EP + T  S L+ C     L  GKQIHG
Sbjct: 512 --SYET-------------AYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHG 556

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +I    L  +V + NAL +MY + G +  AR +F  + +R+++SW  MI G    G+  K
Sbjct: 557 RITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMK 616

Query: 241 CIDLFQEMQLLGLN-PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT----MI 295
            I+LF +MQ  G   PD  T ++IL AC   G + +  ++F  ++ +  V  T      +
Sbjct: 617 AIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCL 676

Query: 296 VGYTQNGKE-EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           VG     +  ++A  L N+M      PD     +++ +C    ++   +     A+ L  
Sbjct: 677 VGLLGRARRFQEAETLINQM---PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNA 733

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            +   V   L ++Y   G  DD   +  +M  R +
Sbjct: 734 RNP-AVYILLSNVYAAAGRWDDVAKIRRVMEGRGI 767


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/636 (40%), Positives = 381/636 (59%), Gaps = 49/636 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  Y ++G++  AR LFD     +I+SWN L+  + R   + D R+LFD+MP+RD +
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  I G+A  G   EA ++F                         L +R         
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEE-----------------------LPIR--------- 275

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  +VF   A+   + + G +D+A  +F+ M  +N VSWN MI+GY+++ Q +K  
Sbjct: 276 -------DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR 328

Query: 243 DLFQEMQLLGLNPDEVTVS--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           +LF +M      P   T S   ++    Q G ID A  LF  + ++D + W  MI GY Q
Sbjct: 329 ELFDQM------PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +G+ E+AL LF +M  +    ++ +++  +SSCA++A+L  G+ +HG+ V  G     + 
Sbjct: 383 SGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA 442

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +AL+ MY KCG  ++A+ VF  +  +++VSWN+MI GYA++G   EALAL++ + +  +
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTI 501

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD  T V VLSAC H  L ++G  +F+S+   +GIT +  HY CMI+LLGR+  +D+A+
Sbjct: 502 KPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +L+KS+P  P++  W  LL    + GD + GE AA  +FE+EP N+G Y++LSN+YAA G
Sbjct: 562 NLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW +V  +RS M+ K VKK   YSW+EI NK H F   D +HPE E IY  L +L  +L+
Sbjct: 622 RWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELK 681

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + GF  +TKLVLHD +EEEK   + YHSEKLA+A+ ++  P G  PIR++KN+RVC DCH
Sbjct: 682 KDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPG-RPIRVIKNLRVCEDCH 740

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I  R II+RDSNRFHHF  G+CSC D W
Sbjct: 741 NAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 223/486 (45%), Gaps = 64/486 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+ WN  +SA+ R G  +   ++F+ M  R +V+YN  I+G+ +      A +VF +M 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM- 117

Query: 149 KDR------FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
            DR         + Y     L+A   L +     Q+  K VV          NA+   +A
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFN-----QMPEKDVVS--------WNAMLSGFA 164

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           + G +++AR +FD+M  +N +SWN ++S Y++NG+ +    LF       ++ + V+ + 
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK----MDWEIVSWNC 220

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++G   +  R+DDA  LF  +  +D + W  MI GY QNG   +A  LF E+   DV   
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV--- 277

Query: 323 KFSISSVVSSCAK----------LASLYHGQVVHGKAVVLGVDDDLLVSSA--------- 363
            F+ +++VS   +             +     V   A++ G      +  A         
Sbjct: 278 -FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336

Query: 364 --------LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
                   ++  Y +CG  D A  +F+ MP R+ +SW +MI+GYAQ+GQ  EAL L+ K+
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            ++    +       LS+C      E G Q H   + A  G          ++ + G+  
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA--GFQTGYIAGNALLAMYGKCG 454

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLS 533
            +++A D+ + +  K + + W+T+++  A  G  K     A  LFE   +   P  + L 
Sbjct: 455 SIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKE----ALALFESMKMTIKPDDVTLV 509

Query: 534 NMYAAC 539
            + +AC
Sbjct: 510 GVLSAC 515



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 31/280 (11%)

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS----CAKLA 337
            I + D V W   I  Y + G+ E AL +FN M           IS  +S+    CA+  
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR-- 111

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
                     K      D DL+  + ++  Y K G    A  +FN MP ++VVSWN+M++
Sbjct: 112 ----------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           G+AQNG   EA  ++D++L +N      ++  +LSA +     E  +  FDS      + 
Sbjct: 162 GFAQNGFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDS-----KMD 212

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
             +  + C++    R   +D A  L   +P + + + W+ +++  A  G +      AR 
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITGYAQNGLLSE----ARR 267

Query: 518 LFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           LFE  PI +   +  + + +   G  ++   I   M  KN
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN 307


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/696 (37%), Positives = 404/696 (58%), Gaps = 41/696 (5%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           HK  + +  +   G   ++   T ++        +E  K++ S +       N + + N 
Sbjct: 128 HKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS-VSNS 186

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL+ YAK G    A+ +FD+M ++DI SWNA+++ H + G +    A F++M  RD V++
Sbjct: 187 LLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           N+ I+G+  +G+   AL +FS+M +D    P  +T  S L+ACA L  L  G+QIH  IV
Sbjct: 247 NSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIV 306

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQPKKC 241
                 +  V NAL  MY++ G ++ AR L ++   ++L    +  ++ GY+K       
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK------- 359

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +++A  +F  +K++D V WT MIVGY Q+
Sbjct: 360 ----------------------------LGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQH 391

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   +A+ LF  M+ E+ RP+ +++++++S  + LASL HG+ +HG AV  G    + VS
Sbjct: 392 GLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVS 451

Query: 362 SALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +ALI MY K G    A   F+++   R+ VSW SMI   AQ+G   EAL L++ +L E L
Sbjct: 452 NALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 511

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +PD  T+V V SAC HA L  +G+ +FD +  V  I P+L HYACM++L GR+  + +A 
Sbjct: 512 RPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           + I+ +P +P+ + W +LLS C +  +I  G++AA  L  LEP N+G Y  L+N+Y+ACG
Sbjct: 572 EFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +WE+ A IR SMK   VKK   +SWIE+ +KVH F  ED  HP+   IY  + K+  +++
Sbjct: 632 KWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIK 691

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  VLHD +EE K + + +HSEKLA+A+ LI  P   T +RIMKN+RVC DCH
Sbjct: 692 KMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT-LRIMKNLRVCNDCH 750

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +KF S ++GR II+RD+ RFHHF  G CSC+D W
Sbjct: 751 TAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 155/500 (31%), Positives = 254/500 (50%), Gaps = 80/500 (16%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           + +L N L++ Y+K+G   +AR LFD+MPLR   SWN +LSA+A+ G +      FD++P
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP 107

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            RDSVS+ T I G+ N G   +A+++   M ++  EP+ +T  + L + A    L  GK+
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  IV   L GNV V N+L +MYAK G+   A+ +FDRM  +++ SWN MI+ +++ GQ
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQ 227

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
               +  F++M                                    E+D V W +MI G
Sbjct: 228 MDLAMAQFEQM-----------------------------------AERDIVTWNSMISG 252

Query: 298 YTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           Y Q G +  AL +F++ML +  + PD+F+++SV+S+CA L  L  G+ +H   V  G D 
Sbjct: 253 YNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDI 312

Query: 357 DLLVSSALIDMYCKCGVTD---------------------------------DAWTVFNM 383
             +V +ALI MY +CG  +                                 +A  +F+ 
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDS 372

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS-ACLHADLFER 442
           +  R+VV+W +MI GY Q+G   EA+ L+  ++ E  +P+S+T  ++LS A   A L   
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHG 432

Query: 443 GQNHFDSISA--VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            Q H  ++ +  ++ ++ S +    M    G  +   +A DLI+    + +++ W++++ 
Sbjct: 433 KQIHGSAVKSGEIYSVSVS-NALITMYAKAGSITSASRAFDLIRC---ERDTVSWTSMII 488

Query: 501 VCAMKGDIKHGEMAARHLFE 520
             A  G   H E  A  LFE
Sbjct: 489 ALAQHG---HAE-EALELFE 504



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 181/412 (43%), Gaps = 89/412 (21%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQ--------IHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           P   +  + L  C  LL     K         +H +++   L  +V++ N L ++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
               AR LFD M  R   SWN ++S Y K G      + F  +                 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRL----------------- 106

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                              ++D+V WTTMIVGY   G+   A+ +  EM+ E + P +F+
Sbjct: 107 ------------------PQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFT 148

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC-------------- 371
           +++V++S A    L  G+ VH   V LG+  ++ VS++L++MY KC              
Sbjct: 149 LTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMV 208

Query: 372 -----------------GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
                            G  D A   F  M  R++V+WNSMI+GY Q G DL AL ++ K
Sbjct: 209 VKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSK 268

Query: 415 LLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL--- 470
           +L+++ L PD FT  SVLSAC + +    G+         H +T   D    ++N L   
Sbjct: 269 MLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHS-----HIVTTGFDISGIVLNALISM 323

Query: 471 -GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFE 520
             R   V+ A  LI+    K   +   T L    + G IK G+M  A+++F+
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTAL----LDGYIKLGDMNEAKNIFD 371


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/651 (39%), Positives = 381/651 (58%), Gaps = 8/651 (1%)

Query: 53  FYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNA-----LLSAHARSGSVQ 107
           F + N     N       K+  + Y + L  K+ +   +  N      L+ A+A  G   
Sbjct: 29  FTQQNVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPW 88

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
             R +FD++P ++ V +N  I  + N     +AL VF  M     +P  YT+   L A +
Sbjct: 89  STRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASS 148

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
              DL  G QIH  +V   L  NVFV N L  MY K G + +A  + D+M  R++VSWN 
Sbjct: 149 GSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNS 208

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--GRIDDAGRLFHVIKE 285
           +++G  +NGQ    +++ +EM+LLGL PD  T++++L A   T    +     +F  +  
Sbjct: 209 LVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLAN 268

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           K  V W  MI  Y  N    +A+ +F +M    V PD  SI+SV+ +C  L++L  G+ +
Sbjct: 269 KSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRI 328

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   V   +  +LL+ +ALIDMY KCG  + A  VF+ M  R+VVSW SMI+ Y  NG+ 
Sbjct: 329 HEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKG 388

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            +A++L+ ++    L PDS  FVSVLSAC HA L + G+ +F  ++    I P ++H+ C
Sbjct: 389 RDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVC 448

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           M++LLGR+  VD+A   IK +P +PN  +W  LLS C +  ++  G +AA  LF+L P  
Sbjct: 449 MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQ 508

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           +G Y++LSN+YA  GRWEDV ++RS MK+K +KK    S  E+DN+VH F++ D++HP++
Sbjct: 509 SGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQS 568

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           + IYEEL   + K++EAG+ P T   LHD +EE+K   +  HSEKLA+A+ ++    G +
Sbjct: 569 KQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPG-S 627

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           PIRI KN+RVCGDCH+  K  S I+GR I +RD+NRFHHF  G CSC D W
Sbjct: 628 PIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/643 (41%), Positives = 380/643 (59%), Gaps = 40/643 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +A+ GS+ D R +F  M  +DSVS+N+ I G    G   EA++ +  M++    
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDIL 412

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T +S+L++CA L   + G+QIHG+ +   +  NV V NAL  +YA+ G +++ R +
Sbjct: 413 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 472

Query: 214 FDRMNNRNLVSWNLMISGYLKN-----------------GQPKKCIDL-----------F 245
           F  M   + VSWN +I    ++                 GQ    I             F
Sbjct: 473 FSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSF 532

Query: 246 QEM--QLLGLN-----PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
            E+  Q+ GL       DE T  N L AC+ + G +D   ++F  + E+ DNV W +MI 
Sbjct: 533 GELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMIS 592

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  N     AL L   ML    R D F  ++V+S+ A +A+L  G  VH  +V   ++ 
Sbjct: 593 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 652

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL- 415
           D++V SAL+DMY KCG  D A   FN MP RN  SWNSMI+GYA++GQ  EAL L++ + 
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           L     PD  TFV VLSAC HA L E G  HF+S+S  +G+ P ++H++CM ++LGR+ +
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH--GEMAARHLFELEPINAGPYIMLS 533
           +DK  D I+ +P KPN LIW T+L  C      K   G+ AA  LF+LEP NA  Y++L 
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 832

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYAA GRWED+   R  MK  +VKK A YSW+ + + VH FV+ D++HP+ ++IY++L 
Sbjct: 833 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLK 892

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L +K+++AG+ P T   L+D ++E K + + YHSEKLA+A+ L  +     PIRIMKN+
Sbjct: 893 ELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNL 952

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S I GR IILRDSNRFHHF  G CSC D W
Sbjct: 953 RVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/478 (27%), Positives = 226/478 (47%), Gaps = 50/478 (10%)

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           + + F++R L+     +D+   N L++A+  +G     R +FD+MP+R+ VS+   ++G+
Sbjct: 19  AARFFHSR-LYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGY 77

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGG 189
           +  G  +EAL     M K+      Y  VS L AC ++  + +  G+QIHG +   +   
Sbjct: 78  SRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAV 137

Query: 190 NVFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           +  V N L  MY K  G +  A   F  +  +N VSWN +IS Y + G  +    +F  M
Sbjct: 138 DAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSM 197

Query: 249 QLLGLNPDEVTV-------------------------------------SNILGACFQTG 271
           Q  G  P E T                                      S ++ A  ++G
Sbjct: 198 QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSI---S 327
            +  A ++F+ ++ ++ V    ++VG  +    E+A  LF +M S  DV P+ + I   S
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSS 317

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPT 386
               S A+   L  G+ VHG  +  G+ D ++ + + L++MY KCG   DA  VF  M  
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN- 445
           ++ VSWNSMI G  QNG  +EA+  Y  + + ++ P SFT +S LS+C      + GQ  
Sbjct: 378 KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQI 437

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           H +S+    GI  ++     ++ L   +  +++   +  S+P   + + W++++   A
Sbjct: 438 HGESLKL--GIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEH-DQVSWNSIIGALA 492



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 125/298 (41%), Gaps = 73/298 (24%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS----------------- 103
           + N L+  YA++G L   R +F  MP  D +SWN+++ A ARS                 
Sbjct: 452 VSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRA 511

Query: 104 ---------------------GSV-QDLRALFDKMPIRD-SVSYNTAIAGFANKGFSREA 140
                                G + + +  L  K  I D + + N  IA +   G     
Sbjct: 512 GQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGC 571

Query: 141 LQVFSRMQKDRFEPT------DYTH--------------------------VSALNACAQ 168
            ++FSRM + R   T       Y H                           + L+A A 
Sbjct: 572 EKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFAS 631

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           +  L RG ++H   V   L  +V V +AL DMY+K G +D A   F+ M  RN  SWN M
Sbjct: 632 VATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSM 691

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLN-PDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           ISGY ++GQ ++ + LF+ M+L G   PD VT   +L AC   G +++  + F  + +
Sbjct: 692 ISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSD 749



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 101/216 (46%), Gaps = 11/216 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G +      F+ MP+R+S S+N+ I+G+A  G   EAL++F  M+
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMK 712

Query: 149 KDRFEPTDY-THVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
            D   P D+ T V  L+AC+    L  G K          L   +   + + D+  + GE
Sbjct: 713 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGE 772

Query: 207 IDKARWLFDRMNNR-NLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           +DK     ++M  + N++ W  ++    + NG+  +      EM L  L P+      +L
Sbjct: 773 LDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEM-LFQLEPENAVNYVLL 831

Query: 265 GACFQT-GRIDDAGRLFHVIKEKD-----NVCWTTM 294
           G  +   GR +D  +    +K+ D        W TM
Sbjct: 832 GNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 867



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 29/194 (14%)

Query: 328 SVVSSCAK---LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           S V SC      A  +H ++   +     +D D+ + + LI+ Y + G +  A  VF+ M
Sbjct: 8   SFVQSCVGHRGAARFFHSRLYKNR-----LDKDVYLCNNLINAYLETGDSVSARKVFDEM 62

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD----LF 440
           P RN VSW  +++GY++NG+  EAL     +++E +  + + FVSVL AC        LF
Sbjct: 63  PLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILF 122

Query: 441 ERGQNHFDSISAVHGITPSLDHY--ACMINLLGRS-----SDVDKAVDLIKSLPHKPNSL 493
            R          +HG+   L +   A + N+L          V  A+     +  K NS+
Sbjct: 123 GR---------QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVK-NSV 172

Query: 494 IWSTLLSVCAMKGD 507
            W++++SV +  GD
Sbjct: 173 SWNSIISVYSQAGD 186


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/636 (40%), Positives = 380/636 (59%), Gaps = 49/636 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  Y ++G++  AR LFD     +I+SWN L+  + R   + D R+LFD+MP+RD +
Sbjct: 188 NGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKI 247

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  I G+A  G   EA ++F                         L +R         
Sbjct: 248 SWNIMITGYAQNGLLSEARRLFEE-----------------------LPIR--------- 275

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  +VF   A+   + + G +D+A  +F+ M  +N VSWN MI+GY+++ Q +K  
Sbjct: 276 -------DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKAR 328

Query: 243 DLFQEMQLLGLNPDEVTVS--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           +LF +M      P   T S   ++    Q G ID A  LF  + ++D + W  MI GY Q
Sbjct: 329 ELFDQM------PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQ 382

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +G+ E+AL LF +M  +    ++ +++  +SSCA++A+L  G+ +HG+ V  G     + 
Sbjct: 383 SGQSEEALHLFIKMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIA 442

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +AL+ MY KCG  ++A+ VF  +  +++VSWN+MI GYA++G   EALAL++ + +  +
Sbjct: 443 GNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTI 501

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD  T V VLSAC H    ++G  +F+S+   +GIT +  HY CMI+LLGR+  +D+A+
Sbjct: 502 KPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEAL 561

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +L+KS+P  P++  W  LL    + GD + GE AA  +FE+EP N+G Y++LSN+YAA G
Sbjct: 562 NLMKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASG 621

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW +V  +RS M+ K VKK   YSW+EI NK H F   D +HPE E IY  L +L  +L+
Sbjct: 622 RWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELK 681

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + GF  +TKLVLHD +EEEK   + YHSEKLA+A+ ++  P G  PIR++KN+RVC DCH
Sbjct: 682 KDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPG-RPIRVIKNLRVCEDCH 740

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I  R II+RDSNRFHHF  G+CSC D W
Sbjct: 741 NAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 223/486 (45%), Gaps = 64/486 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+ WN  +SA+ R G  +   ++F+ M  R +V+YN  I+G+ +      A +VF +M 
Sbjct: 59  DIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKM- 117

Query: 149 KDR------FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
            DR         + Y     L+A   L +     Q+  K VV          NA+   +A
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFN-----QMPEKDVVS--------WNAMLSGFA 164

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           + G +++AR +FD+M  +N +SWN ++S Y++NG+ +    LF       ++ + V+ + 
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSK----MDWEIVSWNC 220

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++G   +  R+DDA  LF  +  +D + W  MI GY QNG   +A  LF E+   DV   
Sbjct: 221 LMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDV--- 277

Query: 323 KFSISSVVSSCAK----------LASLYHGQVVHGKAVVLGVDDDLLVSSA--------- 363
            F+ +++VS   +             +     V   A++ G      +  A         
Sbjct: 278 -FAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPS 336

Query: 364 --------LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
                   ++  Y +CG  D A  +F+ MP R+ +SW +MI+GYAQ+GQ  EAL L+ K+
Sbjct: 337 RNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            ++    +       LS+C      E G Q H   + A  G          ++ + G+  
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKA--GFQTGYIAGNALLAMYGKCG 454

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLS 533
            +++A D+ + +  K + + W+T+++  A  G  K     A  LFE   +   P  + L 
Sbjct: 455 SIEEAFDVFEDITEK-DIVSWNTMIAGYARHGFGKE----ALALFESMKMTIKPDDVTLV 509

Query: 534 NMYAAC 539
            + +AC
Sbjct: 510 GVLSAC 515



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 124/280 (44%), Gaps = 31/280 (11%)

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS----CAKLA 337
            I + D V W   I  Y + G+ E AL +FN M           IS  +S+    CA+  
Sbjct: 54  TIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCAR-- 111

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
                     K      D DL+  + ++  Y K G    A  +FN MP ++VVSWN+M++
Sbjct: 112 ----------KVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           G+AQNG   EA  ++D++L +N      ++  +LSA +     E  +  FDS      + 
Sbjct: 162 GFAQNGFVEEARKIFDQMLVKN----EISWNGLLSAYVQNGRIEDARRLFDS-----KMD 212

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
             +  + C++    R   +D A  L   +P + + + W+ +++  A  G +      AR 
Sbjct: 213 WEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWNIMITGYAQNGLLSE----ARR 267

Query: 518 LFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           LFE  PI +   +  + + +   G  ++   I   M  KN
Sbjct: 268 LFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKN 307


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/603 (41%), Positives = 366/603 (60%), Gaps = 3/603 (0%)

Query: 96   LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
            L+ A+A  G     R +FD++P ++ V +N  I  + N     +AL VF  M     +P 
Sbjct: 1066 LMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPD 1125

Query: 156  DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             YT+   L A +   DL  G QIH  +V   L  NVFV N L  MY K G + +A  + D
Sbjct: 1126 HYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLD 1185

Query: 216  RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--GRI 273
             M  R++VSWN +++G  +NGQ    +++ +EM+LLGL PD  T++++L A   T    +
Sbjct: 1186 ZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNV 1245

Query: 274  DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                 +F  +  K  V W  MI  Y  N    +A+ +F +M    V PD  SI+SV+ +C
Sbjct: 1246 SFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPAC 1305

Query: 334  AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
              L++L  G+ +H   V   +  +LL+ +ALIDMY KCG  + A  VF+ M  R+VVSW 
Sbjct: 1306 GDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWT 1365

Query: 394  SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
            SMI+ Y  NG+  +A++L+ ++    L PDS  FVSVLSAC HA L + G+ +F  ++  
Sbjct: 1366 SMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEE 1425

Query: 454  HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
              I P ++H+ CM++LLGR+  VD+A   IK +P +PN  +W  LLS C +  ++  G +
Sbjct: 1426 CKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLL 1485

Query: 514  AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            AA  LF+L P  +G Y++LSN+YA  GRWEDV ++RS MK+K +KK    S  E+DN+VH
Sbjct: 1486 AADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVH 1545

Query: 574  KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
             F++ D++HP+++ IYEEL  L+ K++EAG+ P T   LHD +EE+K   +  HSEKLA+
Sbjct: 1546 TFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAI 1605

Query: 634  AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            A+ ++    G +PIRI KN+RVCGDCH+  K  S I+GR I +RD+NRFHHF  G CSC 
Sbjct: 1606 AFAILNTAPG-SPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCG 1664

Query: 694  DNW 696
            D W
Sbjct: 1665 DYW 1667



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 185/386 (47%), Gaps = 58/386 (15%)

Query: 49   MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
            +DLN       F+ N L+  Y K G L  A  + D+MP RD++SWN+L++  AR+G   D
Sbjct: 1157 LDLN------VFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDD 1210

Query: 109  -------------------------------------LRALFDKMPIRDSVSYNTAIAGF 131
                                                 ++ +F K+  +  VS+N  IA +
Sbjct: 1211 ALEVCKEMELLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVY 1270

Query: 132  ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
             N     EA+ +F +M+    +P   +  S L AC  L  L  G++IH  +V   L  N+
Sbjct: 1271 MNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNL 1330

Query: 192  FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
             + NAL DMYAK G ++ AR +FD+M  R++VSW  MIS Y  NG+ +  + LF  MQ L
Sbjct: 1331 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDL 1390

Query: 252  GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEED 306
            GLNPD +   ++L AC   G +D+    F ++ E+  +      +  M+    + G+ ++
Sbjct: 1391 GLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDE 1450

Query: 307  ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSA 363
            A     +M  E   P++    +++S+C   +++  G +   +   L  +     +L+S  
Sbjct: 1451 AYGFIKQMPME---PNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLS-- 1505

Query: 364  LIDMYCKCGVTDDAWTVFNMMPTRNV 389
              ++Y K G  +D  TV ++M T+ +
Sbjct: 1506 --NIYAKAGRWEDVTTVRSIMKTKGI 1529



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 45/261 (17%)

Query: 33   CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
            C  ++ + L +R+  ++     +PN   L N L+  YAK G L YAR++FD+M  RD++S
Sbjct: 1305 CGDLSALLLGRRIHEYVVRKRLQPNL-LLENALIDMYAKCGCLEYAREVFDQMKFRDVVS 1363

Query: 93   WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
            W +++SA+  +G                             KG  R+A+ +FSRMQ    
Sbjct: 1364 WTSMISAYGMNG-----------------------------KG--RDAVSLFSRMQDLGL 1392

Query: 153  EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKA 210
             P     VS L+AC+    L  G+  + K++         + +   + D+  + G++D+A
Sbjct: 1393 NPDSIAFVSVLSACSHAGLLDEGR-YYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEA 1451

Query: 211  RWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILG 265
                 +M    N   W  ++S           I L    QL  L P++    V +SNI  
Sbjct: 1452 YGFIKQMPMEPNERVWGALLSAC--RVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYA 1509

Query: 266  ACFQTGRIDDAGRLFHVIKEK 286
               + GR +D   +  ++K K
Sbjct: 1510 ---KAGRWEDVTTVRSIMKTK 1527


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/736 (36%), Positives = 412/736 (55%), Gaps = 79/736 (10%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +      K++  H+   F  P   FL N L+  YAK  ++ YAR +FD+MP R++ S
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEI-FLLNNLVSAYAKFDRITYARRVFDQMPQRNLYS 77

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM----- 147
           WN LLS++++   + ++  +F  MP RD VS+N+ I+ +A +GF  ++++ ++ M     
Sbjct: 78  WNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGP 137

Query: 148 -QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
              +R   +    +++   C  L     G Q+HG +V       VFV + L DMY+K G 
Sbjct: 138 FNLNRIALSTMLILASKQGCVHL-----GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGL 192

Query: 207 IDKARWLFDRMNNRNLV-------------------------------SWNLMISGYLKN 235
           +  AR  FD M  +N+V                               SW  MI+G+ +N
Sbjct: 193 VFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQN 252

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------------ 272
           G  ++ IDLF+EM+L  L  D+ T  ++L AC      Q G+                  
Sbjct: 253 GLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVG 312

Query: 273 ------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                       I  A  +F  +  K+ V WT M+VGY QNG  E+A+ +F +M +  + 
Sbjct: 313 SALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIE 372

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD F++ SV+SSCA LASL  G   H +A+V G+   + VS+AL+ +Y KCG  +D+  +
Sbjct: 373 PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRL 432

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M   + VSW ++++GYAQ G+  E L L++ +L    KPD  TF+ VLSAC  A L 
Sbjct: 433 FSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLV 492

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++G   F+S+   H I P  DHY CMI+L  R+  +++A   I  +P  P+++ W++LLS
Sbjct: 493 QKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C    +++ G+ AA  L +LEP N   YI+LS++YAA G+WE+VA++R  M+ K ++K 
Sbjct: 553 SCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKE 612

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SWI+  N+VH F ++D+++P ++ IY EL KL  K+ + G+ P+   VLHD  + EK
Sbjct: 613 PGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEK 672

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
           +K + +HSEKLA+A+ LI  P G+ PIR++KN+RVCGDCH   K+ S I  R I++RD+ 
Sbjct: 673 IKMLNHHSEKLAIAFGLIFIPPGL-PIRVVKNLRVCGDCHNATKYISKITQREILVRDAA 731

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G CSC D W
Sbjct: 732 RFHLFKDGRCSCGDFW 747



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 213/413 (51%), Gaps = 44/413 (10%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A + +++  ++   V L  ++  H+ + F   +  F+ + L+  Y+K+G +F AR  FD+
Sbjct: 144 ALSTMLILASKQGCVHLGLQVHGHV-VKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDE 202

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP ++++ +N L++   R   ++D R LF  M  +DS+S+   IAGF   G  REA+ +F
Sbjct: 203 MPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLF 262

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M+ +  E   YT  S L AC  ++ L+ GKQ+H  I+  +   N+FV +AL DMY K 
Sbjct: 263 REMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC 322

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
             I  A  +F +MN +N+VSW  M+ GY +NG  ++ + +F +MQ  G+ PD+ T+ +++
Sbjct: 323 KSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVI 382

Query: 265 GACF-----------------------------------QTGRIDDAGRLFHVIKEKDNV 289
            +C                                    + G I+D+ RLF  +   D V
Sbjct: 383 SSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEV 442

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT ++ GY Q GK  + L LF  ML+   +PDK +   V+S+C++   +  G  +    
Sbjct: 443 SWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESM 502

Query: 350 V----VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMIN 397
           +    ++ ++D     + +ID++ + G  ++A    N MP + + + W S+++
Sbjct: 503 IKEHRIIPIEDHY---TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 250/640 (39%), Positives = 389/640 (60%), Gaps = 34/640 (5%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           I  +N+L+S ++R G ++D R +FDKM IRD V++N+ IAG+   G   E  ++F++MQ 
Sbjct: 229 IPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQL 288

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
              +PT  T  S + +CA L +L   K +  K +      +  V  AL    +K  E+D 
Sbjct: 289 AGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDD 348

Query: 210 ARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG--- 265
           A  LF  M   +N+VSW  MISG L+NG   + ++LF +M+  G+ P+  T S IL    
Sbjct: 349 ALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHY 408

Query: 266 ----------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                       A  + G   DA ++F +I+ KD + W+ M+ G
Sbjct: 409 PVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAG 468

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDD 356
           Y Q G+ E+A  LF++++ E ++P++F+ SSV+++CA   A+   G+  H  A+ + +++
Sbjct: 469 YAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNN 528

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            L VSSAL+ MY K G  D A  VF     R++VSWNSMI+GY+Q+GQ  +AL ++D++ 
Sbjct: 529 ALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQ 588

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           + N+  D+ TF+ V++AC HA L E+GQ +F+S+   H I P++ HY+CMI+L  R+  +
Sbjct: 589 KRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGML 648

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           +KA+ +I  +P  P + +W TLL    +  +++ GE+AA  L  L+P ++  Y++LSNMY
Sbjct: 649 EKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMY 708

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA G W++  ++R  M  + VKK   YSWIE+ NK + F++ D THP +  IY +LS+L 
Sbjct: 709 AAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLTHPLSNQIYSKLSELS 768

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            +L++AG+ P+TK V HD ++E+K   + +HSE+LA+A+ LI  P  + PI+I+KN+RVC
Sbjct: 769 IRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATPPEI-PIQIVKNLRVC 827

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH F K  S +  R I++RDSNRFHHF  G CSC D W
Sbjct: 828 GDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 131/470 (27%), Positives = 239/470 (50%), Gaps = 56/470 (11%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           +L+  + ++ +V D R +FD+M  R+ VS+ + +AG++  G      ++F +MQ +   P
Sbjct: 133 SLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLP 192

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT  + + A      +  G Q+H  +V       + V N+L  +Y++ G +  AR +F
Sbjct: 193 NRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVF 252

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
           D+M  R+ V+WN MI+GY++NGQ  +  ++F +MQL G+ P  +T ++++ +C       
Sbjct: 253 DKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELA 312

Query: 268 -------------FQTGRI---------------DDAGRLFHVIKEKDNVC-WTTMIVGY 298
                        F T +I               DDA  LF +++E  NV  WT MI G 
Sbjct: 313 LVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV----VHGKAVVLGV 354
            QNG  + A+ LF++M  E V+P+ F+ S++++         H  V    +H + +    
Sbjct: 373 LQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT--------VHYPVFVSEMHAEVIKTNY 424

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           +    V +AL+D Y K G T DA  VF ++  +++++W++M+ GYAQ G+  EA  L+ +
Sbjct: 425 ERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQ 484

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           L++E +KP+ FTF SV++AC            F + +    +  +L   + ++ +  +  
Sbjct: 485 LIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRG 544

Query: 475 DVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHG-----EMAARHL 518
           ++D A ++ K    K   L+ W++++S  +  G  K       EM  R++
Sbjct: 545 NIDSAHEVFKR--QKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNM 592



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 141/500 (28%), Positives = 242/500 (48%), Gaps = 72/500 (14%)

Query: 112 LFDKMPIRDSV--SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           LFDK+P R +    +N  +  ++    ++EAL +F  +     +P + T     N CA  
Sbjct: 47  LFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGS 106

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           LD + G+Q+H + V   L  +V V  +L DMY K   ++  R +FD M  RN+VSW  ++
Sbjct: 107 LDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLL 166

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------- 268
           +GY  NG      +LF +MQ  G+ P+  TVS ++ A                       
Sbjct: 167 AGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFE 226

Query: 269 --------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                         + G + DA  +F  ++ +D V W +MI GY +NG++ +   +FN+M
Sbjct: 227 EAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKM 286

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
               V+P   + +SV+ SCA L  L   +++  KA+  G   D +V +AL+    KC   
Sbjct: 287 QLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEM 346

Query: 375 DDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS- 432
           DDA ++F++M   +NVVSW +MI+G  QNG + +A+ L+ ++ +E +KP+ FT+ ++L+ 
Sbjct: 347 DDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTV 406

Query: 433 ------ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
                 + +HA++ +       S+      T  LD Y      LG + D  K  ++I++ 
Sbjct: 407 HYPVFVSEMHAEVIKTNYERSSSVG-----TALLDAYV----KLGNTIDAVKVFEIIEA- 456

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYIMLSNMYAACGRWED 544
               + + WS +L+  A  G+    E AA+   +L  E I    +   S++  AC     
Sbjct: 457 ---KDLMAWSAMLAGYAQTGET---EEAAKLFHQLIKEGIKPNEFT-FSSVINACA---- 505

Query: 545 VASIRSSMKSKNVKKFAAYS 564
                 +  ++  K+F AY+
Sbjct: 506 ----SPTAAAEQGKQFHAYA 521


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/643 (39%), Positives = 376/643 (58%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +I    A+LS + + GS++D   +FD +  R+ VS+   IAGFA  G   EA   F++M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   EP   T +S L AC+    L+RG+QI   I+    G +  VR AL  MYAK G + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F++++ +N+V+WN MI+ Y+++ Q    +  FQ +   G+ P+  T ++IL  C 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                                G +  A  LF+ + ++D V W T
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+ Q+GK + A   F  M    ++PDK + + ++++CA   +L  G+ +H       
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+LV + LI MY KCG  +DA  VF+ +P +NV SW SMI GYAQ+G+  EAL L+ 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFY 705

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE +KPD  TFV  LSAC HA L E G +HF S+   + I P ++HY CM++L GR+
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRA 764

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++AV+ I  +  +P+S +W  LL  C +  +++  E AA+   EL+P + G +++LS
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YAA G W++VA +R  M  + V K    SWIE+D KVH F S+D+THP+TE I+ EL 
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELE 884

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L  ++++ G+ P+T+ VLHD ++ EK +++ YHSE+LA+ Y L+K P  +TPI I KN+
Sbjct: 885 RLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTP-PLTPIVISKNL 943

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   KF S I  R II RDSNRFHHF  G CSC D W
Sbjct: 944 RVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 171/658 (25%), Positives = 298/658 (45%), Gaps = 127/658 (19%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           + Y+ L+  C +  ++   +R+ +H+  +  +P+  F+ N L++ YAK G    A+ +FD
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI-FMWNTLINMYAKCGNTISAKQIFD 169

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            M  +D+ SWN LL                                G+   G   EA ++
Sbjct: 170 DMREKDVYSWNLLL-------------------------------GGYVQHGLYEEAFKL 198

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
             +M +D  +P   T VS LNACA   ++ +G++++  I+      ++FV  AL +M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G+I  A  +FD +  R+LV+W  MI+G  ++G+ K+  +LFQ M+  G+ PD+V   ++
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L AC                                    + G ++DA  +F ++K ++ 
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT MI G+ Q+G+ ++A + FN+M+   + P++ +  S++ +C+  ++L  GQ +   
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +  G   D  V +AL+ MY KCG   DA  VF  +  +NVV+WN+MI  Y Q+ Q   A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-NHFDSISAVHGITPSLDHYACMI 467
           LA +  LL+E +KP+S TF S+L+ C  +D  E G+  HF  + A  G+   L     ++
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNALV 556

Query: 468 NLLGRSSDVDKAVDLIKSLPH----------------------------------KPNSL 493
           ++     D+  A +L   +P                                   KP+ +
Sbjct: 557 SMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 494 IWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
            ++ LL+ CA    +  G     +     F+ + +     I   +MY  CG  ED   + 
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLI---SMYTKCGSIEDAHQVF 673

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
             +  KNV     YSW  +   +  +    R     E+ Y+        +Q+ G  P+
Sbjct: 674 HKLPKKNV-----YSWTSM---ITGYAQHGRGKEALELFYQ--------MQQEGVKPD 715



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 151/564 (26%), Positives = 262/564 (46%), Gaps = 95/564 (16%)

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           I+D+   N  +   +  G   EA+QV  R+     +    T+ + L  C +  +L  G++
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           I+  I    +  ++F+ N L +MYAK G    A+ +FD M  +++ SWNL++ GY+++G 
Sbjct: 132 IYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------ 267
            ++   L ++M    + PD+ T  ++L AC                              
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G I DA ++F  +  +D V WT+MI G  ++G+ + A  LF  M  E V+PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           K +  S++ +C    +L  G+ VH +   +G D ++ V +A++ MY KCG  +DA  VF+
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
           ++  RNVVSW +MI G+AQ+G+  EA   ++K+++  ++P+  TF+S+L AC      +R
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 443 GQNHFDS-ISAVHGI-----TPSLDHYA------------------------CMINLLGR 472
           GQ   D  I A +G      T  L  YA                         MI    +
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 473 SSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE------MAARHLFELEP 523
               D A+   ++L     KPNS  ++++L+VC     ++ G+      M A    +L  
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            NA     L +M+  CG      ++ + M  +++      SW  I   +  FV     H 
Sbjct: 552 SNA-----LVSMFVNCGDLMSAKNLFNDMPKRDL-----VSWNTI---IAGFVQ----HG 594

Query: 584 ETEIIYEELSKLIKKLQEAGFSPN 607
           + ++ ++      K +QE+G  P+
Sbjct: 595 KNQVAFD----YFKMMQESGIKPD 614


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 274/705 (38%), Positives = 399/705 (56%), Gaps = 52/705 (7%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFD 83
           AY   +    R+  +E A+R+   M      P+   +  N ++  Y ++ +   AR LFD
Sbjct: 18  AYNSQIARYARIGQIESARRVFDEM------PDKGIVSWNSMVAGYFQNNRPREARYLFD 71

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           KMP R+ +SWN L+S + ++  V + R  FD MP R+ VS+   + G+  +G   EA  +
Sbjct: 72  KMPERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETL 131

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F +M +          VS       L+ +RR  +  G   +  +  +V  R  +   Y +
Sbjct: 132 FWQMPEKNV-------VSWTVMLGGLIQVRRIDEARGLFDIMPVK-DVVARTNMISGYCQ 183

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G + +AR LFD M  RN++SW  MISGY++NGQ      LF+ M       +EV+ + +
Sbjct: 184 EGRLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMP----EKNEVSWTAM 239

Query: 264 LGACFQTGRIDDAGRLFHV-------------------------------IKEKDNVCWT 292
           L    Q GRI++A  LF                                 I+EKD+  W+
Sbjct: 240 LMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWS 299

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y + G E +AL LF  M  E V+ +  S+ SV+S CA LASL HG+ VH + V  
Sbjct: 300 AMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS 359

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
             D D+ V+S LI MY KCG    A  +F+    +++V WNS+I GYAQ+G   EAL ++
Sbjct: 360 QFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVF 419

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++    +  D  TFV VLSAC +    + G   F+S+ + + + P  +HYACM++LLGR
Sbjct: 420 HEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGR 479

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  V+ A+DLI+ +P + +++IW  LL  C    ++   E+AA+ L +LEP NAGPYI+L
Sbjct: 480 AGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILL 539

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT-HPETEIIYEE 591
           SN+YA+ GRW DVA +R +M+ K V K    SWIE++ +VH F     T HPE   I + 
Sbjct: 540 SNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKM 599

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L KL   L+EAG+ P++  VLHD  EEEKV+S+ +HSE+LA+A+ L+K P G+ PIR+MK
Sbjct: 600 LEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGM-PIRVMK 658

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH  +K  + I GR IILRD+NRFHHF  G CSC+D W
Sbjct: 659 NLRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/643 (39%), Positives = 376/643 (58%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +I    A+LS + + GS++D   +FD +  R+ VS+   IAGFA  G   EA   F++M 
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMI 405

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   EP   T +S L AC+    L+RG+QI   I+    G +  VR AL  MYAK G + 
Sbjct: 406 ESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLK 465

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F++++ +N+V+WN MI+ Y+++ Q    +  FQ +   G+ P+  T ++IL  C 
Sbjct: 466 DAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCK 525

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                                G +  A  LF+ + ++D V W T
Sbjct: 526 SSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+ Q+GK + A   F  M    ++PDK + + ++++CA   +L  G+ +H       
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+LV + LI MY KCG  +DA  VF+ +P +NV SW SMI GYAQ+G+  EAL L+ 
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFY 705

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE +KPD  TFV  LSAC HA L E G +HF S+   + I P ++HY CM++L GR+
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFN-IEPRMEHYGCMVDLFGRA 764

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++AV+ I  +  +P+S +W  LL  C +  +++  E AA+   EL+P + G +++LS
Sbjct: 765 GLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDNGVFVILS 824

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YAA G W++VA +R  M  + V K    SWIE+D KVH F S+D+THP+TE I+ EL 
Sbjct: 825 NIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELE 884

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L  ++++ G+ P+T+ VLHD ++ EK +++ YHSE+LA+ Y L+K P  +TPI I KN+
Sbjct: 885 RLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLKTP-PLTPIVISKNL 943

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   KF S I  R II RDSNRFHHF  G CSC D W
Sbjct: 944 RVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/658 (25%), Positives = 298/658 (45%), Gaps = 127/658 (19%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           + Y+ L+  C +  ++   +R+ +H+  +  +P+  F+ N L++ YAK G    A+ +FD
Sbjct: 111 QTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDI-FMRNTLINMYAKCGNTISAKQIFD 169

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            M  +D+ SWN LL                                G+   G   EA ++
Sbjct: 170 DMREKDVYSWNLLL-------------------------------GGYVQHGLYEEAFKL 198

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
             +M +D  +P   T VS LNACA   ++ +G++++  I+      ++FV  AL +M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G+I  A  +FD +  R+LV+W  MI+G  ++G+ K+  +LFQ M+  G+ PD+V   ++
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L AC                                    + G ++DA  +F ++K ++ 
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT MI G+ Q+G+ ++A + FN+M+   + P++ +  S++ +C+  ++L  GQ +   
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +  G   D  V +AL+ MY KCG   DA  VF  +  +NVV+WN+MI  Y Q+ Q   A
Sbjct: 439 IIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNA 498

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-NHFDSISAVHGITPSLDHYACMI 467
           LA +  LL+E +KP+S TF S+L+ C  +D  E G+  HF  + A  G+   L     ++
Sbjct: 499 LATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNALV 556

Query: 468 NLLGRSSDVDKAVDLIKSLPH----------------------------------KPNSL 493
           ++     D+  A +L   +P                                   KP+ +
Sbjct: 557 SMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKI 616

Query: 494 IWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
            ++ LL+ CA    +  G     +     F+ + +     I   +MY  CG  ED   + 
Sbjct: 617 TFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLI---SMYTKCGSIEDAHQVF 673

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
             +  KNV     YSW  +   +  +    R     E+ Y+        +Q+ G  P+
Sbjct: 674 HKLPKKNV-----YSWTSM---IAGYAQHGRGKEALELFYQ--------MQQEGVKPD 715



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/564 (26%), Positives = 263/564 (46%), Gaps = 95/564 (16%)

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           I+D+   N  +   +  G   EA+QV  R+     +    T+ + L  C +  +L  G++
Sbjct: 72  IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGER 131

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           I+  I    +  ++F+RN L +MYAK G    A+ +FD M  +++ SWNL++ GY+++G 
Sbjct: 132 IYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGL 191

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------ 267
            ++   L ++M    + PD+ T  ++L AC                              
Sbjct: 192 YEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTA 251

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G I DA ++F  +  +D V WT+MI G  ++G+ + A  LF  M  E V+PD
Sbjct: 252 LINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPD 311

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           K +  S++ +C    +L  G+ VH +   +G D ++ V +A++ MY KCG  +DA  VF+
Sbjct: 312 KVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFD 371

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
           ++  RNVVSW +MI G+AQ+G+  EA   ++K+++  ++P+  TF+S+L AC      +R
Sbjct: 372 LVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKR 431

Query: 443 GQNHFDS-ISAVHGI-----TPSLDHYA------------------------CMINLLGR 472
           GQ   D  I A +G      T  L  YA                         MI    +
Sbjct: 432 GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQ 491

Query: 473 SSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE------MAARHLFELEP 523
               D A+   ++L     KPNS  ++++L+VC     ++ G+      M A    +L  
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            NA     L +M+  CG      ++ + M  +++      SW  I   +  FV     H 
Sbjct: 552 SNA-----LVSMFVNCGDLMSAKNLFNDMPKRDL-----VSWNTI---IAGFVQ----HG 594

Query: 584 ETEIIYEELSKLIKKLQEAGFSPN 607
           + ++ ++      K +QE+G  P+
Sbjct: 595 KNQVAFD----YFKMMQESGIKPD 614


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/687 (38%), Positives = 406/687 (59%), Gaps = 41/687 (5%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G + T+  +T ++  C     +++ K++ S + +   +     + N LL+ YAK G
Sbjct: 136 MVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFV-VKLGQSGVVPVANSLLNMYAKCG 194

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
               A+ +FD+M L+D  +WN ++S H +        ALFD+M   D VS+N+ I G+ +
Sbjct: 195 DSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCH 254

Query: 134 KGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           +G+   AL+ FS M K    +P  +T  S L+ACA    L+ GKQIH  IV  ++     
Sbjct: 255 QGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGA 314

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNR--NLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V NAL  MYAK G ++ A  + +       N++++  ++ GY                  
Sbjct: 315 VGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGY------------------ 356

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                            F+ G ID A  +F  +K +D V WT MIVGY QNG   DAL+L
Sbjct: 357 -----------------FKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVL 399

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M+ E  +P+ +++++V+S  + LASL HG+ +H  A+ L     + V +ALI MY +
Sbjct: 400 FRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSR 459

Query: 371 CGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            G   DA  +FN + + R+ ++W SMI   AQ+G   EA+ L++K+L+ NLKPD  T+V 
Sbjct: 460 SGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVG 519

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC H  L E+G+++F+ +  VH I P+  HYACMI+LLGR+  +++A + I+++P +
Sbjct: 520 VLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE 579

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P+ + W +LLS C +   +   ++AA  L  ++P N+G Y+ L+N  +ACG+WED A +R
Sbjct: 580 PDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVR 639

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
            SMK K VKK   +SW++I NKVH F  ED  HP+ + IY  +SK+ K++++ GF P+T 
Sbjct: 640 KSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTN 699

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VLHD ++E K + + +HSEKLA+A+ LI  P   T +RIMKN+RVC DCH  +++ S +
Sbjct: 700 SVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTT-VRIMKNLRVCNDCHSAIRYISLL 758

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + R II+RD+ RFHHF  G+CSC+D W
Sbjct: 759 VEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 182/432 (42%), Gaps = 108/432 (25%)

Query: 164 NACAQLL-------DLRRGKQIHGKIVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFD 215
           +AC  LL       D   G+ IH +I+   L    VF+ N L ++Y K G    A  LFD
Sbjct: 13  DACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFD 72

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M  +   SWN                                    IL A  + G +D 
Sbjct: 73  EMPLKTTFSWN-----------------------------------TILSAHAKAGNLDS 97

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F  I + D+V WTTMIVGY   G  + A+  F  M+S  + P +F+ ++V++SCA 
Sbjct: 98  ARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAA 157

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT--------------------- 374
             +L  G+ VH   V LG    + V+++L++MY KCG +                     
Sbjct: 158 AQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTM 217

Query: 375 ----------DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPD 423
                     D A  +F+ M   ++VSWNS+I GY   G D+ AL  +  +L+  +LKPD
Sbjct: 218 ISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPD 277

Query: 424 SFTFVSVLSACLHADLFERGQ------------------NHFDSISAVHGI--------- 456
            FT  SVLSAC + +  + G+                  N   S+ A  G          
Sbjct: 278 KFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVE 337

Query: 457 ---TPSLD--HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
              TPSL+   +  +++   +  D+D A  +  SL H+ + + W+ ++   A  G I   
Sbjct: 338 ITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHR-DVVAWTAMIVGYAQNGLISDA 396

Query: 512 EMAARHLFELEP 523
            +  R +    P
Sbjct: 397 LVLFRLMIREGP 408



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 41/231 (17%)

Query: 314 MLSEDVRPDKFSISSV--VSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCK 370
           ML+    P   S + V  + S  K    + G+ +H + +  G+    + +++ L+++Y K
Sbjct: 1   MLTPTPNPPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVK 60

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            G + DA  +F+ MP +   SWN++++ +A+ G    A  ++D++ Q    PDS ++ ++
Sbjct: 61  TGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ----PDSVSWTTM 116

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +    H  LF+         SAVH              L   SS +             P
Sbjct: 117 IVGYNHLGLFK---------SAVHAF------------LRMVSSGIS------------P 143

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI-MLSNMYAACG 540
               ++ +L+ CA    +  G+     + +L      P    L NMYA CG
Sbjct: 144 TQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCG 194


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 265/694 (38%), Positives = 411/694 (59%), Gaps = 39/694 (5%)

Query: 40  ELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG---KLFYARDLFDKMPL-RDIISWNA 95
           E A +L S M L   +PN  F    +L   A  G   K      +  K  L   I   N+
Sbjct: 175 EQALKLFSQMQLEGIKPNP-FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           +++ +++S  V D +A+FD M  R++VS+N+ IAGF   G   EA ++F RM+ +  + T
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLT 293

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
                + +  CA + ++   KQ+H +++      ++ ++ AL   Y+K  EID A  LF 
Sbjct: 294 QTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFC 353

Query: 216 RMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-------- 266
            M+  +N+VSW  +ISGY++NG+  + ++LF +M+  G+ P+  T S IL A        
Sbjct: 354 MMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQ 413

Query: 267 -----------------------CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G  ++A ++F +I EKD V W+ M+ GY Q G 
Sbjct: 414 IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGD 473

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDDDLLVSS 362
            E A+ +F ++  E V P++F+ SSV+++CA   AS+  G+  H  ++  G  + L VSS
Sbjct: 474 IEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSS 533

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+ MY K G  + A  VF     R++VSWNSMI+GYAQ+G   ++L +++++  +NL+ 
Sbjct: 534 ALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLEL 593

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D  TF+ V+SAC HA L   GQ +FD +   + I P+++HY+CM++L  R+  ++KA+DL
Sbjct: 594 DGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDL 653

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I  +P    + IW TLL+ C +  +++ GE+AA  L  L+P ++  Y++LSN+YA  G W
Sbjct: 654 INKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNW 713

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           ++ A +R  M  K VKK A YSWIE+ NK   F++ D +HP+++ IY +L +L  +L++A
Sbjct: 714 QERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDA 773

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P+TK VLHD +EE K   +  HSE+LA+A+ LI  P G TPI+I+KN+RVCGDCH  
Sbjct: 774 GYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG-TPIQIVKNLRVCGDCHTV 832

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  S I GR I++RDSNRFHHF GG+CSC D W
Sbjct: 833 IKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 237/456 (51%), Gaps = 41/456 (8%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+    +L+  + ++ SV+D   +FD+M +++ VS+ + +AG+   G + +AL++FS+
Sbjct: 124 VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ 183

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ +  +P  +T  + L   A    + +G Q+H  ++   L   +FV N++ +MY+K   
Sbjct: 184 MQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLM 243

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  A+ +FD M NRN VSWN MI+G++ NG   +  +LF  M+L G+   +   + ++  
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303

Query: 267 CF-----------------------------------QTGRIDDAGRLFHVIKEKDNVC- 290
           C                                    +   IDDA +LF ++    NV  
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WT +I GY QNG+ + A+ LF +M  E VRP+ F+ S+++++ A ++       +H   V
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQIHALVV 419

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
               ++   V +AL D Y K G  ++A  +F ++  +++V+W++M++GYAQ G    A+ 
Sbjct: 420 KTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVK 479

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           ++ +L +E ++P+ FTF SVL+AC            F S S   G + +L   + ++ + 
Sbjct: 480 IFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMY 539

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            +  +++ A ++ K    + + + W++++S  A  G
Sbjct: 540 AKRGNIESANEVFKRQVDR-DLVSWNSMISGYAQHG 574



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/469 (27%), Positives = 225/469 (47%), Gaps = 48/469 (10%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQ 168
           + LFD+ P +     N  +  F+    ++EAL +F  +++    PTD + +S  L  C  
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG-SPTDGSSLSCVLKVCGC 104

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L D   GKQ+H + +      +V V  +L DMY K   ++    +FD M  +N+VSW  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID-------------- 274
           ++GY +NG  ++ + LF +MQL G+ P+  T + +LG     G ++              
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 275 ---------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                                DA  +F  ++ ++ V W +MI G+  NG + +A  LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M  E V+  +   ++V+  CA +  +   + +H + +  G D DL + +AL+  Y KC  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 374 TDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
            DDA+ +F MM   +NVVSW ++I+GY QNG+   A+ L+ ++ +E ++P+ FT+ ++L+
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           A          Q H   +   +  +PS+     + +   +  D ++A  + + +  K + 
Sbjct: 405 A---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELIDEK-DI 458

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACG 540
           + WS +LS  A  GDI   E A +   +L      P     S++  AC 
Sbjct: 459 VAWSAMLSGYAQMGDI---EGAVKIFLQLAKEGVEPNEFTFSSVLNACA 504



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 188/423 (44%), Gaps = 74/423 (17%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           ++ LFD    + L   N ++  + +N Q K+ ++LF  ++  G   D  ++S +L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             +T  ++D  R+F  ++ K+ V WT++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           + GY QNG  E AL LF++M  E ++P+ F+ ++V+   A   ++  G  VH   +  G+
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D  + V +++++MY K  +  DA  VF+ M  RN VSWNSMI G+  NG DLEA  L+ +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 415 LLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNH----------------- 446
           +  E +K     F +V+  C           LH  + + G +                  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 447 ----FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLL 499
               F     +HG+  ++  +  +I+   ++   D+A++L   +     +PN   +ST+L
Sbjct: 345 IDDAFKLFCMMHGVQ-NVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL 403

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           +  A     +   +  +  +E  P + G    LS+ Y+  G   + A I   +  K++  
Sbjct: 404 TANAAVSPSQIHALVVKTNYENSP-SVGT--ALSDSYSKIGDANEAAKIFELIDEKDIVA 460

Query: 560 FAA 562
           ++A
Sbjct: 461 WSA 463


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/693 (38%), Positives = 404/693 (58%), Gaps = 67/693 (9%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           +N ++  Y ++G+   AR LFD+MP RD++SWN ++  + R+ ++   R LF++MP RD 
Sbjct: 93  YNAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDV 152

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-----GK 176
            S+NT ++G+A  G   +A +VF RM     E  D +  + L+A  Q   L       G 
Sbjct: 153 CSWNTILSGYAQNGCVDDARRVFDRMP----EKNDVSWNALLSAYVQNSKLEEACVLFGS 208

Query: 177 QIHGKIVVGN--LGG--------------------NVFVRNALTDMYAKGGEIDKAR--- 211
           + +  +V  N  LGG                    +V   N +   YA+ GEID+AR   
Sbjct: 209 RENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF 268

Query: 212 ----------W------------------LFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                     W                  LFDRM  RN VSWN M++GY++  + +   +
Sbjct: 269 DESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKE 328

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           LF  M    ++    T + ++    Q G+I +A  LF  + ++D V W  MI GY+Q+G 
Sbjct: 329 LFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGH 384

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +AL LF  M  E  R ++ S SS +S+CA + +L  G+ +HG+ V  G +    V +A
Sbjct: 385 SYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNA 444

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MYCKCG  ++A  +F  M  +++VSWN+MI GY+++G   EAL  ++ + +E LKPD
Sbjct: 445 LLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPD 504

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             T V+VLSAC H  L ++G+ +F +++  +G+ P+  HYACM++LLGR+  +++A +L+
Sbjct: 505 DATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLM 564

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           K++P +P++ IW TLL    + G+ +  E AA  +F +EP N+G Y++LSN+YA+ GRW 
Sbjct: 565 KNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWG 624

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  +R  M+ K VKK   YSWIEI NK H F   D  HPE + I+  L  L  ++++AG
Sbjct: 625 DVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAG 684

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           +   T +VLHD +EEEK + + YHSE+LA+AY +++   G  PIR++KN+RVC DCH  +
Sbjct: 685 YVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG-RPIRVIKNLRVCEDCHNAI 743

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K+ + + GR IILRD+NRFHHF  G+CSC D W
Sbjct: 744 KYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 31/258 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL--------------------- 97
            F    ++  Y ++  +  AR+LFD+MP R+ +SWNA+L                     
Sbjct: 276 VFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPC 335

Query: 98  ----------SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
                     + +A+ G + + + LFDKMP RD VS+   IAG++  G S EAL++F  M
Sbjct: 336 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLM 395

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +++       +  SAL+ CA ++ L  GKQ+HG++V G      FV NAL  MY K G I
Sbjct: 396 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 455

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A  LF  M  +++VSWN MI+GY ++G  ++ +  F+ M+  GL PD+ T+  +L AC
Sbjct: 456 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515

Query: 268 FQTGRIDDAGRLFHVIKE 285
             TG +D   + FH + +
Sbjct: 516 SHTGLVDKGRQYFHTMTQ 533



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 133/480 (27%), Positives = 224/480 (46%), Gaps = 59/480 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI  WN  +S++ R+G   +   +F +MP   SVSYN  I+G+   G    A  +F  M 
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +      +      +    +  +L + +++  ++       +V   N +   YA+ G +D
Sbjct: 118 ERDLVSWNVM----IKGYVRNRNLGKARELFERMPE----RDVCSWNTILSGYAQNGCVD 169

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRM  +N VSWN ++S Y++N + ++   LF   +   L    V+ + +LG   
Sbjct: 170 DARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL----VSWNCLLGGFV 225

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE-----------MLS- 316
           +  +I +A + F  +K +D V W T+I GY QNG+ ++A  LF+E           M+S 
Sbjct: 226 KKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSG 285

Query: 317 -------EDVRP--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS--ALI 365
                  E+ R   D+    + VS  A LA    G+ V     +  V     VS+   +I
Sbjct: 286 YIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMI 345

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
             Y +CG   +A  +F+ MP R+ VSW +MI GY+Q+G   EAL L+  + +E  + +  
Sbjct: 346 TGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRS 405

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHG-ITPSLDHYACMIN-----LLGRSSDVDKA 479
           +F S LS C      E G+        +HG +        C +      +  +   +++A
Sbjct: 406 SFSSALSTCADVVALELGKQ-------LHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 458

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE------LEPINAGPYIMLS 533
            DL K +  K + + W+T+++  +  G    GE A R  FE      L+P +A    +LS
Sbjct: 459 NDLFKEMAGK-DIVSWNTMIAGYSRHG---FGEEALR-FFESMKREGLKPDDATMVAVLS 513



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 113/272 (41%), Gaps = 37/272 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G      +++  +  C  V  +EL K+L   +    YE    F+ N LL  Y K G +  
Sbjct: 399 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC-FVGNALLLMYCKCGSIEE 457

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A DLF +M  +DI+SWN ++                               AG++  GF 
Sbjct: 458 ANDLFKEMAGKDIVSWNTMI-------------------------------AGYSRHGFG 486

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ-IHGKIVVGNLGGNVFVRNA 196
            EAL+ F  M+++  +P D T V+ L+AC+    + +G+Q  H       +  N      
Sbjct: 487 EEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYAC 546

Query: 197 LTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           + D+  + G +++A  L   M    +   W  ++     +G  +  +      ++  + P
Sbjct: 547 MVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTE--LAETAADKIFAMEP 604

Query: 256 DEVTVSNILGACF-QTGRIDDAGRLFHVIKEK 286
           +   +  +L   +  +GR  D G+L   +++K
Sbjct: 605 ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 636



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 20/152 (13%)

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D D+   +  I  Y + G   +A  VF  MP  + VS+N+MI+GY +NG+   A  L+D+
Sbjct: 56  DSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 415 LLQENLKPDSFT---FVSVLSACLHADLFERGQNHFDSISAVHGITPSLD--HYACMINL 469
           + + +L   +     +V   +     +LFER               P  D   +  +++ 
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFER--------------MPERDVCSWNTILSG 161

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
             ++  VD A  +   +P K N + W+ LLS 
Sbjct: 162 YAQNGCVDDARRVFDRMPEK-NDVSWNALLSA 192


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 262/640 (40%), Positives = 375/640 (58%), Gaps = 24/640 (3%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  + K+G L  AR +FD MP R+++SW +++  + R+G V +   LF  MP ++ V
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149

Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTD----YTHVSALNACAQLLDLRRGKQ 177
           S+   + G   +G   +A ++F  M +KD    T+    Y     L+    L D    + 
Sbjct: 150 SWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKR- 208

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
                       NV    A+   YA+ G++D AR LF+ M  RN VSW  M+ GY  +G+
Sbjct: 209 ------------NVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGR 256

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
            ++   LF  M +    P  V    I+G     G +D A R+F  +KE+DN  W+ MI  
Sbjct: 257 MREASSLFDAMPV---KPVVVCNEMIMGFGL-NGEVDKARRVFKGMKERDNGTWSAMIKV 312

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y + G E +AL LF  M  E +  +  S+ SV+S C  LASL HG+ VH + V    D D
Sbjct: 313 YERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQD 372

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           L V+S LI MY KCG    A  VFN  P ++VV WNSMI GY+Q+G   EAL ++  +  
Sbjct: 373 LYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCS 432

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             + PD  TF+ VLSAC ++   + G   F+++   + + P ++HYAC+++LLGR+  V+
Sbjct: 433 SGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVN 492

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A+ L++ +P +P++++W  LL  C     +   E+A   L +LEP NAGPY++LSNMYA
Sbjct: 493 EAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYA 552

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLI 596
             GRW DV  +R  +K+++V K    SWIE++ KVH F   D + HPE  II + L KL 
Sbjct: 553 YKGRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLG 612

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
             L+EAG+ P+   VLHD  EEEK  S+ YHSEKLA+AY L+K P G+ PIR+MKN+RVC
Sbjct: 613 GLLREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGM-PIRVMKNLRVC 671

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH  +K  + + GR IILRD+NRFHHF  G+CSCKD W
Sbjct: 672 GDCHSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 160/314 (50%), Gaps = 36/314 (11%)

Query: 201 YAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           YA+ G++D AR +FD   + +R + SWN M++ Y +  QP++ + LF++M      P   
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------PQRN 85

Query: 259 TVS--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           TVS   ++    + G + +A R+F  + +++ V WT+M+ GY +NG   +A  LF  M  
Sbjct: 86  TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHM-- 143

Query: 317 EDVRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVT 374
               P K    +VVS    L  L   G+V   + +  +  + D++  + +I  YC+ G  
Sbjct: 144 ----PHK----NVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRL 195

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           D+A  +F+ MP RNVV+W +M++GYA+NG+   A  L++ + + N      ++ ++L   
Sbjct: 196 DEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERN----EVSWTAMLLGY 251

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNS 492
            H+       + FD++       P      C  MI   G + +VDKA  + K +  + N 
Sbjct: 252 THSGRMREASSLFDAM-------PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNG 304

Query: 493 LIWSTLLSVCAMKG 506
             WS ++ V   KG
Sbjct: 305 -TWSAMIKVYERKG 317



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 21/207 (10%)

Query: 361 SSALIDMYCKCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           SS  I  Y + G  D A  VF+   +P R V SWN+M+  Y +  Q  EAL L++K+ Q 
Sbjct: 25  SSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR 84

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           N    + ++  ++S  +   +    +  FD++   + ++     +  M+    R+ DV +
Sbjct: 85  N----TVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS-----WTSMVRGYVRNGDVAE 135

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM--- 535
           A  L   +PHK N + W+ +L     +G +      AR LF++ P      + ++NM   
Sbjct: 136 AERLFWHMPHK-NVVSWTVMLGGLLQEGRVDD----ARKLFDMMP--EKDVVAVTNMIGG 188

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAA 562
           Y   GR ++  ++   M  +NV  + A
Sbjct: 189 YCEEGRLDEARALFDEMPKRNVVTWTA 215


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/648 (38%), Positives = 392/648 (60%), Gaps = 39/648 (6%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+    +L+  + ++ SV+D   +FD+M +++ VS+ + +AG+   G + +AL++FS+
Sbjct: 124 VEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQ 183

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ +  +P  +T  + L   A    + +G Q+H  ++   L   +FV N++ +MY+K   
Sbjct: 184 MQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLM 243

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  A+ +FD M NRN VSWN MI+G++ NG   +  +LF  M+L G+   +   + ++  
Sbjct: 244 VSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKL 303

Query: 267 CF-----------------------------------QTGRIDDAGRLFHVIKEKDNVC- 290
           C                                    +   IDDA +LF ++    NV  
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAK-LASLYHGQVVHGK 348
           WT +I GY QNG+ + A+ LF +M  E+ V P++F+ SSV+++CA   AS+  G+  H  
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSC 423

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           ++  G  + L VSSAL+ MY K G  + A  VF     R++VSWNSMI+GYAQ+G   ++
Sbjct: 424 SIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKS 483

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L +++++  +NL+ D  TF+ V+SAC HA L   GQ +FD +   + I P+++HY+CM++
Sbjct: 484 LKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVD 543

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           L  R+  ++KA+DLI  +P    + IW TLL+ C +  +++ GE+AA  L  L+P ++  
Sbjct: 544 LYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAA 603

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++LSN+YA  G W++ A +R  M  K VKK A YSWIE+ NK   F++ D +HP+++ I
Sbjct: 604 YVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRI 663

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y +L +L  +L++AG+ P+TK VLHD +EE K   +  HSE+LA+A+ LI  P G TPI+
Sbjct: 664 YLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPG-TPIQ 722

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I+KN+RVCGDCH  +K  S I GR I++RDSNRFHHF GG+CSC D W
Sbjct: 723 IVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/435 (27%), Positives = 215/435 (49%), Gaps = 40/435 (9%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQ 168
           + LFD+ P +     N  +  F+    ++EAL +F  +++    PTD + +S  L  C  
Sbjct: 46  QQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSG-SPTDGSSLSCVLKVCGC 104

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L D   GKQ+H + +      +V V  +L DMY K   ++    +FD M  +N+VSW  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID-------------- 274
           ++GY +NG  ++ + LF +MQL G+ P+  T + +LG     G ++              
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 275 ---------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                                DA  +F  ++ ++ V W +MI G+  NG + +A  LF  
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M  E V+  +   ++V+  CA +  +   + +H + +  G D DL + +AL+  Y KC  
Sbjct: 285 MRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 374 TDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQENLKPDSFTFVSVL 431
            DDA+ +F MM   +NVVSW ++I+GY QNG+   A+ L+ ++  +E ++P+ FTF SVL
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVL 404

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           +AC            F S S   G + +L   + ++ +  +  +++ A ++ K    + +
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDR-D 463

Query: 492 SLIWSTLLSVCAMKG 506
            + W++++S  A  G
Sbjct: 464 LVSWNSMISGYAQHG 478



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 172/372 (46%), Gaps = 78/372 (20%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           +T F+ N +++ Y+KS  +  A+ +FD M  R+ +SWN++                    
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSM-------------------- 265

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                      IAGF   G   EA ++F RM+ +  + T     + +  CA + ++   K
Sbjct: 266 -----------IAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAK 314

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKN 235
           Q+H +++      ++ ++ AL   Y+K  EID A  LF  M+  +N+VSW  +ISGY++N
Sbjct: 315 QLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQN 374

Query: 236 GQPKKCIDLFQEMQL-LGLNPDEVTVSNILGAC--------------------------- 267
           G+  + ++LF +M+   G+ P+E T S++L AC                           
Sbjct: 375 GRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALC 434

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G I+ A  +F    ++D V W +MI GY Q+G  + +L +F EM S++
Sbjct: 435 VSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKN 494

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-----SALIDMYCKCGV 373
           +  D  +   V+S+C     +  GQ    +   L V D  +V      S ++D+Y + G+
Sbjct: 495 LELDGITFIGVISACTHAGLVNEGQ----RYFDLMVKDYHIVPTMEHYSCMVDLYSRAGM 550

Query: 374 TDDAWTVFNMMP 385
            + A  + N MP
Sbjct: 551 LEKAMDLINKMP 562



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/229 (29%), Positives = 121/229 (52%), Gaps = 5/229 (2%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  +++N + ++AL LF  +       D  S+S V+  C  L     G+ VH + +  G
Sbjct: 63  LLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCG 122

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
             +D+ V ++L+DMY K    +D   VF+ M  +NVVSW S++ GY QNG + +AL L+ 
Sbjct: 123 FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFS 182

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGR 472
           ++  E +KP+ FTF +VL         E+G Q H   I +  G+  ++     M+N+  +
Sbjct: 183 QMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKS--GLDSTIFVGNSMVNMYSK 240

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG-DIKHGEMAARHLFE 520
           S  V  A  +  S+ ++ N++ W+++++     G D++  E+  R   E
Sbjct: 241 SLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 271/746 (36%), Positives = 410/746 (54%), Gaps = 69/746 (9%)

Query: 15  YSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMD----------LNFYEPNTTFLHNR 64
           Y R +  +  +Y+   +     + V   K + SHM            N     ++  +N 
Sbjct: 23  YYRSKRRSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNA 82

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           ++  Y ++ K   ARDLFDKMP RD+ SWN +L+ + R+  + +   LFD MP +D VS+
Sbjct: 83  MISGYLRNAKFSLARDLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSW 142

Query: 125 NTAIAGFANKGFSREALQVFSRM-----------------------QKDRFEPTD----- 156
           N  ++G+A  GF  EA +VF++M                        +  FE        
Sbjct: 143 NAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELI 202

Query: 157 --------YTHVSALNACAQLLD-------LRRGKQIHGKIVVGNLGG-----------N 190
                   Y   + L    QL D       +     I G   VG+L             +
Sbjct: 203 SWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRD 262

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           VF   A+   Y + G +D+AR  FD M  +N +S+N M++GY++  +     +LF+ M  
Sbjct: 263 VFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPC 322

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
             ++    + + ++    Q G I  A +LF ++ ++D V W  +I GY QNG  E+AL +
Sbjct: 323 RNIS----SWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNM 378

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F EM  +    ++ + S  +S+CA +A+L  G+ VHG+ V  G +    V +AL+ MY K
Sbjct: 379 FVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFK 438

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG TD+A  VF  +  ++VVSWN+MI GYA++G   +AL L++ + +  +KPD  T V V
Sbjct: 439 CGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGV 498

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC H+ L +RG  +F S+   + + P+  HY CMI+LLGR+  +++A +L++++P  P
Sbjct: 499 LSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDP 558

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            +  W  LL    + G+ + GE AA  +F++EP N+G Y++LSN+YAA GRW DV  +RS
Sbjct: 559 GAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRS 618

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+   V+K   YSW+E+ NK+H F   D  HPE + IY  L +L  K++  G+  +TKL
Sbjct: 619 KMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTKL 678

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VLHD +EEEK   + YHSEKLA+A+ ++  P G  PIR+MKN+RVC DCH  +K  S I+
Sbjct: 679 VLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG-RPIRVMKNLRVCQDCHNAIKHISKIV 737

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR IILRDS+RFHHF  G CSC D W
Sbjct: 738 GRLIILRDSHRFHHFSEGICSCGDYW 763


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/737 (35%), Positives = 411/737 (55%), Gaps = 68/737 (9%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y+  +  C  +      K +  ++      P T FLHN ++H YA      YAR +FD +
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPET-FLHNNIVHAYALIRSSIYARRVFDGI 64

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P  ++ SWN LL A+++SG + ++   F+K+P RD V++N  I G++  G    A++ ++
Sbjct: 65  PQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYN 124

Query: 146 RMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M KD     T  T ++ L   +    +  GKQIHG+++       + V + L DMY+K 
Sbjct: 125 TMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKV 184

Query: 205 GEIDKARWLFDRMNNRNLV------------------------------SWNLMISGYLK 234
           G I  A+ +F  +++RN V                              SW+ MI G  +
Sbjct: 185 GCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQ 244

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD------------------- 275
           NG  K+ I+ F+EM++ GL  D+    ++L AC   G I+D                   
Sbjct: 245 NGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYV 304

Query: 276 ----------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                           A  +F  +K+K+ V WT M+VGY Q G+  +A+ +F +M    +
Sbjct: 305 GSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGI 364

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD +++   +S+CA ++SL  G   HGKA+  G+   + VS++L+ +Y KCG  DD+  
Sbjct: 365 DPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTR 424

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +FN M  R+ VSW +M++ YAQ G+ +EA+ L+DK++Q  LKPD  T   V+SAC  A L
Sbjct: 425 LFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGL 484

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            E+GQ +F+ +   +GI PS  HY+CMI+L  RS  +++A+  I  +P +P+++ W+TLL
Sbjct: 485 VEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLL 544

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           S C  KG+++ G+ AA  L EL+P +   Y +LS++YA+ G+W+ VA +R  MK KNV+K
Sbjct: 545 SACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRK 604

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
               SWI+   K+H F ++D + P ++ IY +L +L +K+ + G+ P+T  V HD +E  
Sbjct: 605 EPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAV 664

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K+K +  HSE+LA+A+ LI  P G+ PIR+ KN+RVC DCH   K  S + GR I++RD+
Sbjct: 665 KIKMLNCHSERLAIAFGLIFVPSGL-PIRVGKNLRVCVDCHNATKHISSVTGREILVRDA 723

Query: 680 NRFHHFVGGNCSCKDNW 696
            RFH F  G CSC D W
Sbjct: 724 VRFHRFKDGTCSCGDFW 740


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/696 (38%), Positives = 402/696 (57%), Gaps = 41/696 (5%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           HK  + +  +   G   T+   T ++        +E  K++ S +       N + + N 
Sbjct: 128 HKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS-VSNS 186

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL+ YAK G    A+ +FD+M +RDI SWNA+++ H + G +    A F++M  RD V++
Sbjct: 187 LLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTW 246

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           N+ I+GF  +G+   AL +FS+M +D    P  +T  S L+ACA L  L  GKQIH  IV
Sbjct: 247 NSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIV 306

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQPKKC 241
                 +  V NAL  MY++ G ++ AR L ++   ++L    +  ++ GY+K       
Sbjct: 307 TTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIK------- 359

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G ++ A  +F  +K++D V WT MIVGY Q+
Sbjct: 360 ----------------------------LGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQH 391

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   +A+ LF  M+    RP+ +++++++S  + LASL HG+ +HG AV  G    + VS
Sbjct: 392 GSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVS 451

Query: 362 SALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +ALI MY K G    A   F+++   R+ VSW SMI   AQ+G   EAL L++ +L E L
Sbjct: 452 NALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGL 511

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +PD  T+V V SAC HA L  +G+ +FD +  V  I P+L HYACM++L GR+  + +A 
Sbjct: 512 RPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQ 571

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           + I+ +P +P+ + W +LLS C +  +I  G++AA  L  LEP N+G Y  L+N+Y+ACG
Sbjct: 572 EFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACG 631

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +WE+ A IR SMK   VKK   +SWIE+ +KVH F  ED THPE   IY  + K+  +++
Sbjct: 632 KWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIK 691

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  VLHD +EE K + + +HSEKLA+A+ LI  P   T +RIMKN+RVC DCH
Sbjct: 692 KMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTT-LRIMKNLRVCNDCH 750

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +KF S ++GR II+RD+ RFHHF  G CSC+D W
Sbjct: 751 TAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 156/522 (29%), Positives = 259/522 (49%), Gaps = 84/522 (16%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           + +L N L++ Y+K+G   +AR LFD+MPLR   SWN +LSA+++ G +      FD++P
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP 107

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            RDSVS+ T I G+ N G   +A++V   M K+  EPT +T  + L + A    +  GK+
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK 167

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  IV   L GNV V N+L +MYAK G+   A+++FDRM  R++ SWN MI+ +++ GQ
Sbjct: 168 VHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQ 227

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
               +  F++M                                    E+D V W +MI G
Sbjct: 228 MDLAMAQFEQM-----------------------------------AERDIVTWNSMISG 252

Query: 298 YTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           + Q G +  AL +F++ML +  + PD+F+++SV+S+CA L  L  G+ +H   V  G D 
Sbjct: 253 FNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDI 312

Query: 357 DLLVSSALIDMYCKCGVTD---------------------------------DAWTVFNM 383
             +V +ALI MY +CG  +                                  A  +F  
Sbjct: 313 SGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVS 372

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +  R+VV+W +MI GY Q+G   EA+ L+  ++    +P+S+T  ++LS          G
Sbjct: 373 LKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHG 432

Query: 444 -QNHFDSISAVHGITPSLDHYACMINLLGRSSDV---DKAVDLIKSLPHKPNSLIWSTLL 499
            Q H  ++ +  G   S+     +I +  ++ ++    +A DLI+    + +++ W++++
Sbjct: 433 KQIHGSAVKS--GEIYSVSVSNALITMYAKAGNITSASRAFDLIRC---ERDTVSWTSMI 487

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINA--GPYIMLSNMYAAC 539
              A  G   H E  A  LFE   +      +I    +++AC
Sbjct: 488 IALAQHG---HAE-EALELFETMLMEGLRPDHITYVGVFSAC 525



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 181/411 (44%), Gaps = 89/411 (21%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQ--------IHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           P   +  + L  C  LL     K         +H +++   L  +V++ N L ++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
               AR LFD M  R   SWN ++S Y K G                             
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGD---------------------------- 95

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                  +D     F  + ++D+V WTTMIVGY   G+   A+ +  +M+ E + P +F+
Sbjct: 96  -------MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFT 148

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC-------------- 371
           +++V++S A    +  G+ VH   V LG+  ++ VS++L++MY KC              
Sbjct: 149 LTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMV 208

Query: 372 -----------------GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
                            G  D A   F  M  R++V+WNSMI+G+ Q G DL AL ++ K
Sbjct: 209 VRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSK 268

Query: 415 LLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL--- 470
           +L+++ L PD FT  SVLSAC + +    G+         H +T   D    ++N L   
Sbjct: 269 MLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHS-----HIVTTGFDISGIVLNALISM 323

Query: 471 -GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLF 519
             R   V+ A  LI+    K   +   T L    + G IK G+M  A+++F
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTAL----LDGYIKLGDMNQAKNIF 370


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/643 (39%), Positives = 380/643 (59%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +I    ALLS + + GS++D   +F+ +  R+ VS+   IAGFA  G   EA   F++M 
Sbjct: 340 EIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMI 399

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   EP   T +S L AC++   L++G+QIH +I+      +  VR AL  MYAK G + 
Sbjct: 400 ESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLM 459

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            AR +F+R++ +N+V+WN MI+ Y+++ +    +  FQ +   G+ PD  T ++IL  C 
Sbjct: 460 DARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCK 519

Query: 268 -------------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTT 293
                              F++               G +  A  LF+ + E+D V W T
Sbjct: 520 SPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT 579

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+ Q+G+ + A   F  M    V+PD+ + + ++++CA   +L  G+ +H       
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA 639

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D D++V + LI MY KCG  DDA  VF+ +P +NV SW SMI GYAQ+G+  EAL L+ 
Sbjct: 640 LDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFC 699

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE +KPD  TFV  LSAC HA L + G +HF+S+   + I P ++HY CM++L GR+
Sbjct: 700 QMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESMKDFN-IEPRMEHYGCMVDLFGRA 758

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +AV+ I  +  KP+S +W  LL  C +  D++  E  A+   EL+P + G Y++LS
Sbjct: 759 GLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILS 818

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YAA G W++V  +R  M  + V K    SWIE+D +VH F S+D+THP+ E I+ EL 
Sbjct: 819 NIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELG 878

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L  ++++ G+ P+T+ VLHD ++ EK  ++C+HSE+LA+AY L+K P  +TPI I KN+
Sbjct: 879 RLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLKTP-PLTPIVISKNL 937

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K  S I  R II RDSNRFHHF  G CSC D W
Sbjct: 938 RVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 244/459 (53%), Gaps = 42/459 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI  WN L+S +A+ G+    + +FD+MP +D  S+N  + G+       EA ++  +M 
Sbjct: 138 DIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMV 197

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +D  +P  YT V  LNACA   ++ +G ++   I+      ++FV  AL +M+ K G +D
Sbjct: 198 QDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVD 257

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F+ +  R+L++W  MI+G  ++ Q K+  +LFQ M+  G+ PD+V   ++L AC 
Sbjct: 258 DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN 317

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G ++DA  +F+++K ++ V WT 
Sbjct: 318 HPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTA 377

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI G+ Q+G+ E+A + FN+M+   + P++ +  S++ +C++ ++L  G+ +H + +  G
Sbjct: 378 MIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAG 437

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D  V +AL+ MY KCG   DA  VF  +  +NVV+WN+MI  Y Q+ +   A+A + 
Sbjct: 438 YITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQ 497

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            LL+E +KPDS TF S+L+ C   D  E G+    S+    G    L     ++++    
Sbjct: 498 ALLKEGIKPDSSTFTSILNVCKSPDALELGK-WVQSLIIRAGFESDLHIRNALVSMFVNC 556

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            D+  A++L   +P + + + W+T+++     G ++HGE
Sbjct: 557 GDLMSAMNLFNDMPER-DLVSWNTIIA-----GFVQHGE 589



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 149/564 (26%), Positives = 261/564 (46%), Gaps = 95/564 (16%)

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           I+++   N  +   +  G   EA+ V   +     +    T+ S L  C +  +L  G++
Sbjct: 66  IKNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGER 125

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IH  I    +  ++F+ N L  MYAK G  + A+ +FD M ++++ SWNL++ GY+++ +
Sbjct: 126 IHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRR 185

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------ 267
            ++   L ++M   G+ PD+ T   +L AC                              
Sbjct: 186 YEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTA 245

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G +DDA ++F+ +  +D + WT+MI G  ++ + + A  LF  M  E V+PD
Sbjct: 246 LINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPD 305

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           K +  S++ +C    +L  G+ VH +   +G+D ++ V +AL+ MY KCG  +DA  VFN
Sbjct: 306 KVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFN 365

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
           ++  RNVVSW +MI G+AQ+G+  EA   ++K+++  ++P+  TF+S+L AC      ++
Sbjct: 366 LVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQ 425

Query: 443 GQNHFDSISAVHGITPS------LDHYA------------------------CMINLLGR 472
           G+   D I     IT        L  YA                         MI    +
Sbjct: 426 GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQ 485

Query: 473 SSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFE--LEP 523
               D AV   ++L     KP+S  ++++L+VC     ++ G+    +  R  FE  L  
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            NA     L +M+  CG      ++ + M  +++      SW  I   +  FV     H 
Sbjct: 546 RNA-----LVSMFVNCGDLMSAMNLFNDMPERDL-----VSWNTI---IAGFVQ----HG 588

Query: 584 ETEIIYEELSKLIKKLQEAGFSPN 607
           E +  ++      K +QE+G  P+
Sbjct: 589 ENQFAFD----YFKMMQESGVKPD 608



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 240/517 (46%), Gaps = 72/517 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+   L++ + K G +  A  +F+ +P RD+I+W ++++  AR                 
Sbjct: 241 FVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLAR----------------- 283

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                        ++ F ++A  +F  M+++  +P     VS L AC     L +GK++H
Sbjct: 284 -------------HRQF-KQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVH 329

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
            ++    L   ++V  AL  MY K G ++ A  +F+ +  RN+VSW  MI+G+ ++G+ +
Sbjct: 330 ARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRME 389

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
           +    F +M   G+ P+ VT  +ILGAC                                
Sbjct: 390 EAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALL 449

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G + DA  +F  I +++ V W  MI  Y Q+ K ++A+  F  +L E ++PD  
Sbjct: 450 SMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSS 509

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + +S+++ C    +L  G+ V    +  G + DL + +AL+ M+  CG    A  +FN M
Sbjct: 510 TFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDM 569

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           P R++VSWN++I G+ Q+G++  A   +  + +  +KPD  TF  +L+AC   +    G+
Sbjct: 570 PERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGR 629

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                I+    +   +     +I++  +   +D A  +  +LP K N   W+++++  A 
Sbjct: 630 RLHALITEA-ALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQ 687

Query: 505 KGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACG 540
            G    G+ A     +++     P +I      +AC 
Sbjct: 688 HG---RGKEALELFCQMQQEGVKPDWITFVGALSACA 721


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/700 (36%), Positives = 409/700 (58%), Gaps = 43/700 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFD 83
           +Y  ++    R  + ELA++L   M      P    +  N ++  Y ++  L  AR+LF+
Sbjct: 97  SYNGMISGYLRNGEFELARKLFDEM------PERDLVSWNVMIKGYVRNRNLGKARELFE 150

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            MP RD+ SWN +LS +A++G V D R++FD+MP ++ VS+N  ++ +       EA  +
Sbjct: 151 IMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACML 210

Query: 144 FSRMQ-----------------------KDRFEPTDYTHVSALNAC----AQLLDLRRGK 176
           F   +                       +  F+  +   V + N      AQ   +   +
Sbjct: 211 FKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEAR 270

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+  +  V +    VF   A+   Y +   +++AR LFD+M  RN VSWN M++GY++  
Sbjct: 271 QLFDESPVQD----VFTWTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGE 326

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
           + +   +LF  M    ++    T + ++    Q G+I +A  LF  + ++D V W  MI 
Sbjct: 327 RMEMAKELFDVMPCRNVS----TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY+Q+G   +AL LF +M  E  R ++ S SS +S+CA + +L  G+ +HG+ V  G + 
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET 442

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V +AL+ MYCKCG  ++A  +F  M  +++VSWN+MI GY+++G    AL  ++ + 
Sbjct: 443 GCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMK 502

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +E LKPD  T V+VLSAC H  L ++G+ +F +++  +G+ P+  HYACM++LLGR+  +
Sbjct: 503 REGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLL 562

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           + A +L+K++P +P++ IW TLL    + G+ +  E AA  +F +EP N+G Y++LSN+Y
Sbjct: 563 EDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLY 622

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A+ GRW DV  +R  M+ K VKK   YSWIEI NK H F   D  HPE + I+  L +L 
Sbjct: 623 ASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELD 682

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            ++++AG+   T +VLHD +EEEK + + YHSE+LA+AY +++   G  PIR++KN+RVC
Sbjct: 683 LRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSG-RPIRVIKNLRVC 741

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K+ + I GR IILRD+NRFHHF  G+CSC D W
Sbjct: 742 EDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 132/485 (27%), Positives = 221/485 (45%), Gaps = 69/485 (14%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI  WN  +S++ R+G   +   +F +MP   SVSYN  I+G+   G    A ++F  M 
Sbjct: 63  DIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMP 122

Query: 149 KDRFEPTD-----YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           +      +     Y     L    +L ++   +             +V   N +   YA+
Sbjct: 123 ERDLVSWNVMIKGYVRNRNLGKARELFEIMPER-------------DVCSWNTMLSGYAQ 169

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D AR +FDRM  +N VSWN ++S Y++N + ++   LF+  +   L    V+ + +
Sbjct: 170 NGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCL 225

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-- 321
           LG   +  +I +A + F  +  +D V W T+I GY Q+GK ++A  LF+E   +DV    
Sbjct: 226 LGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWT 285

Query: 322 -------------------DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
                              DK    + VS  A LA    G+ +     +  V     VS+
Sbjct: 286 AMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVST 345

Query: 363 --ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
              +I  Y +CG   +A  +F+ MP R+ VSW +MI GY+Q+G   EAL L+ ++ +E  
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG 405

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG-ITPSLDHYACMIN-----LLGRSS 474
           + +  +F S LS C      E G+        +HG +        C +      +  +  
Sbjct: 406 RLNRSSFSSALSTCADVVALELGKQ-------LHGRLVKGGYETGCFVGNALLLMYCKCG 458

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE------LEPINAGP 528
            +++A DL K +  K + + W+T+++  +  G    GE+A R  FE      L+P +A  
Sbjct: 459 SIEEANDLFKEMAGK-DIVSWNTMIAGYSRHG---FGEVALR-FFESMKREGLKPDDATM 513

Query: 529 YIMLS 533
             +LS
Sbjct: 514 VAVLS 518



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 70/160 (43%), Gaps = 32/160 (20%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G      +++  +  C  V  +EL K+L   +    YE    F+ N LL  Y K G +  
Sbjct: 404 GGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGC-FVGNALLLMYCKCGSIEE 462

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A DLF +M  +DI+SWN                               T IAG++  GF 
Sbjct: 463 ANDLFKEMAGKDIVSWN-------------------------------TMIAGYSRHGFG 491

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
             AL+ F  M+++  +P D T V+ L+AC+    + +G+Q
Sbjct: 492 EVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 531



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 14/169 (8%)

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           K A+    Q    K ++   D D+   +  I  Y + G  ++A  VF  MP  + VS+N 
Sbjct: 41  KRATQTQIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNG 100

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI+GY +NG+   A  L+D++ + +L          +S  +    + R +N       + 
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDL----------VSWNVMIKGYVRNRN-LGKARELF 149

Query: 455 GITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            I P  D   +  M++   ++  VD A  +   +P K N + W+ LLS 
Sbjct: 150 EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK-NDVSWNALLSA 197


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 258/661 (39%), Positives = 380/661 (57%), Gaps = 37/661 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK F+A+ +     + D     AL+S + + GS+   R +FD +  RD  ++N  I G
Sbjct: 179 KLGKEFHAQ-VIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A  G   +A Q+F RMQ++ F+P   + +S L+ C+    L  GK +H + +   L  +
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V V  AL  MY   G I+ AR +FD+M  R++VSW +MI GY +N   +    LF  MQ 
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 251 LGLNPDEVTVSNILGAC--------------------FQT---------------GRIDD 275
            G+ PD +T  +I+ AC                    F T               G I D
Sbjct: 358 EGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKD 417

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  +  +D V W+ MI  Y +NG  E+A   F+ M   +V PD  +  +++++C  
Sbjct: 418 ARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGH 477

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L +L  G  ++ +A+   +   + V +ALI+M  K G  + A  +F  M  R+VV+WN M
Sbjct: 478 LGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVM 537

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I GY+ +G   EAL L+D++L+E  +P+S TFV VLSAC  A   E G+  F  +    G
Sbjct: 538 IGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRG 597

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           I P+++ Y CM++LLGR+ ++D+A  LI  +P KPNS IWSTLL+ C + G++   E AA
Sbjct: 598 IVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAA 657

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
                 EP +   Y+ LS+MYAA G WE+VA +R  M+S+ V+K    +WIE++ K+H F
Sbjct: 658 ERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTF 717

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           V EDR+HP+   IY EL++L+  ++  G+ P T+ VLH+  E+EK ++I YHSEKLA+AY
Sbjct: 718 VVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAY 777

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            ++  P G  PIRI KN+RVCGDCH   KF S + GR II RD++RFHHF  G CSC D 
Sbjct: 778 GVLSLPSG-APIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDY 836

Query: 696 W 696
           W
Sbjct: 837 W 837



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/578 (27%), Positives = 259/578 (44%), Gaps = 113/578 (19%)

Query: 10  AIDTLYSRGQAAT---EEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFL 61
           A D L+  G+ +       Y +L   C  + D  L K+++ H+      LN YE NT   
Sbjct: 45  ANDVLHRLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNT--- 101

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
                                             L+  H+  G++ + R  FD +  +  
Sbjct: 102 ----------------------------------LIKLHSICGNMLEARQTFDSVENKTV 127

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           V++N  IAG+A  G  +EA  +F +M  +  EP+  T +  L+AC+    L+ GK+ H +
Sbjct: 128 VTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQ 187

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           ++      +  +  AL  MY KGG +D AR +FD +  R++ ++N+MI GY K+G  +K 
Sbjct: 188 VIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKA 247

Query: 242 IDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTGRIDD---------- 275
             LF  MQ  G  P+ ++  +IL                  C  TG +DD          
Sbjct: 248 FQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRM 307

Query: 276 ---------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                    A R+F  +K +D V WT MI GY +N   EDA  LF  M  E ++PD+ + 
Sbjct: 308 YMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITY 367

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
             ++++CA  A L   + +H + V  G   DLLV +AL+ MY KCG   DA  VF+ M  
Sbjct: 368 IHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSR 427

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-- 444
           R+VVSW++MI  Y +NG   EA   +  + + N++PD  T++++L+AC H    + G   
Sbjct: 428 RDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEI 487

Query: 445 ----------------NHFDSISAVHG------------ITPSLDHYACMINLLGRSSDV 476
                           N   +++  HG            +   +  +  MI       + 
Sbjct: 488 YTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNA 547

Query: 477 DKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHG 511
            +A+DL   +     +PNS+ +  +LS C+  G ++ G
Sbjct: 548 REALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEG 585



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 176/373 (47%), Gaps = 76/373 (20%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y   G +  AR +FDKM +RD++SW  ++  +A + +++D                
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIED---------------- 347

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                          A  +F+ MQ++  +P   T++  +NACA   DL   ++IH ++V 
Sbjct: 348 ---------------AFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVR 392

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
              G ++ V  AL  MYAK G I  AR +FD M+ R++VSW+ MI  Y++NG  ++  + 
Sbjct: 393 AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFET 452

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           F  M+   + PD VT  N+L AC                                    +
Sbjct: 453 FHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVK 512

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I+ A  +F  + ++D V W  MI GY+ +G   +AL LF+ ML E  RP+  +   V
Sbjct: 513 HGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGV 572

Query: 330 VSSCAKLASLYHGQ-----VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +S+C++   +  G+     ++ G+ +V  ++    +   ++D+  + G  D+A  + N M
Sbjct: 573 LSACSRAGFVEEGRRFFSYLLDGRGIVPTME----LYGCMVDLLGRAGELDEAELLINRM 628

Query: 385 PTR-NVVSWNSMI 396
           P + N   W++++
Sbjct: 629 PLKPNSSIWSTLL 641



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 192/375 (51%), Gaps = 16/375 (4%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TTFLHNRLLHFYAKSGKLFYARDLFD 83
           ++T ++      +++E A  L + M     +P+  T++H  +++  A S  L  AR++  
Sbjct: 331 SWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIH--IINACASSADLSLAREIHS 388

Query: 84  KMPL----RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           ++       D++   AL+  +A+ G+++D R +FD M  RD VS++  I  +   G   E
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A + F  M+++  EP   T+++ LNAC  L  L  G +I+ + +  +L  ++ V NAL +
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           M  K G I++AR++F+ M  R++V+WN+MI GY  +G  ++ +DLF  M      P+ VT
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVT 568

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG-----YTQNGKEEDALILFNEM 314
              +L AC + G +++  R F  + +   +  T  + G       + G+ ++A +L N M
Sbjct: 569 FVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRM 628

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
               ++P+    S+++++C    +L   +    +  ++    D  V   L  MY   G+ 
Sbjct: 629 ---PLKPNSSIWSTLLAACRIYGNLDVAERA-AERCLMSEPYDGAVYVQLSHMYAAAGMW 684

Query: 375 DDAWTVFNMMPTRNV 389
           ++   V  +M +R V
Sbjct: 685 ENVAKVRKVMESRGV 699



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 120/307 (39%), Gaps = 57/307 (18%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           + LI ++  CG   +A   F+ +  + VV+WN++I GYAQ G   EA AL+ +++ E ++
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAME 159

Query: 422 PDSFTFVSVLSAC-----------LHADLFERG-----------QNHFDSISAVHGITPS 459
           P   TF+ VL AC            HA + + G            + +    ++ G    
Sbjct: 160 PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219

Query: 460 LDH--------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDI 508
            D         +  MI    +S D +KA  L   +     KPN + + ++L  C+    +
Sbjct: 220 FDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEAL 279

Query: 509 KHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
             G+           + +      L  MY  CG  E    +   MK ++V      SW  
Sbjct: 280 AWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDV-----VSWTV 334

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           +           R + E   I E+   L   +QE G  P+    +H       + + C  
Sbjct: 335 M----------IRGYAENSNI-EDAFGLFATMQEEGIQPDRITYIH-------IINACAS 376

Query: 628 SEKLALA 634
           S  L+LA
Sbjct: 377 SADLSLA 383


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/637 (39%), Positives = 392/637 (61%), Gaps = 42/637 (6%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL+ YAK G    A+ +FD+M +++I +WNAL+S + +SG  +   + F+KMP RD VS+
Sbjct: 183 LLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSW 242

Query: 125 NTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           N+ I+G++ +G++ EAL +FS+M  +   +P ++T  S L+ACA L  L  GKQIH  I+
Sbjct: 243 NSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKNGQPKKC 241
                 +  V NAL  MYAK G ++ AR + +  R +N N++++  ++ GY K       
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK------- 355

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +  A  +F+ ++++D V WT MIVGY QN
Sbjct: 356 ----------------------------LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   DAL LF  M++E   P+ +++++++S  + L  L HG+ +H  A+  G      V+
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +ALI MY K G  + A  VF++ P   + +VSW SMI   AQ+G   EA+ L++++L   
Sbjct: 448 NALIAMYAKTGNINVAKRVFDL-PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KPD  T+V VLSAC H  L E+G+ +++ ++ VH I P+L HYACMI+L GR+  + +A
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
              I+S+P +P+++ W +LL+ C +  +    ++AA  L  ++P N+G Y+ L+N+Y+AC
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           G+WE+ A  R  MK + V+K    SWI I N+VH F  ED  HP+ + IY+ ++++ +++
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           ++ GF P+T+ VLHD +EE K + + YHSEKLA+A+ L+  P   T +RIMKN+RVC DC
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPEN-TALRIMKNLRVCNDC 745

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +KF S ++GR II+RD+ RFHHF  G+CSC+D W
Sbjct: 746 HSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 252/498 (50%), Gaps = 78/498 (15%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            +L N L+ FYAK+G L +A  +FD+MPL+   SWN L+S +A+ G+ +  R L  +MP 
Sbjct: 45  VYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD 104

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            D VS+   I G+   G    A+ +F++M  +R  P+ +T  + L++CA    L  G++I
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI 164

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +V   LG  V V  +L +MYAK G+   A+ +FDRM  +N+ +WN +IS Y+++GQ 
Sbjct: 165 HSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQF 224

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
           +     F++M      PD                             +D V W +MI GY
Sbjct: 225 ELAASQFEKM------PD-----------------------------RDIVSWNSMISGY 249

Query: 299 TQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +Q G   +AL +F++ML+E  ++PD F+++S++S+CA L  L  G+ +H   +    +  
Sbjct: 250 SQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 358 LLVSSALIDMYCKCGVTD-----------------------DAWT----------VFNMM 384
             V +ALI MY K G  +                       D +T          +FN +
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG- 443
             R+VV+W +MI GY QNG   +AL L+  ++ E  +P+S+T  ++LS      + E G 
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVC 502
           Q H  +I A    TPS+ +   +I +  ++ +++ A  +   LP+    ++ W++++   
Sbjct: 430 QIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMAL 486

Query: 503 AMKGDIKHGEMAARHLFE 520
           A  G  K     A +LFE
Sbjct: 487 AQHGLGKE----AINLFE 500



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 127/423 (30%), Positives = 206/423 (48%), Gaps = 78/423 (18%)

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           + H+  L    ++ D   G+ +H +I+   L   V++ N L   YAK G +  A  +FD 
Sbjct: 13  FAHI--LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  ++  SWN +ISGY K G                               F+  R    
Sbjct: 71  MPLKSTFSWNTLISGYAKQGN------------------------------FEVSR---- 96

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            RL + + + D V WT +IVGY Q G  ++A+ +F +M+SE V P +F++S+V+SSCA  
Sbjct: 97  -RLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG------VTDDAWTV---------- 380
            +L  G+ +H   V LG+   + V+++L++MY KCG      V  D  TV          
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 381 ---------------FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDS 424
                          F  MP R++VSWNSMI+GY+Q G +LEALA++ K+L E +LKPD+
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDN 275

Query: 425 FTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           FT  S+LSAC + +    G Q H   + A    + ++ +   +I++  +S  V+ A  ++
Sbjct: 276 FTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN--ALISMYAKSGGVEIARLIV 333

Query: 484 K-SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGR 541
           + +     N + +++LL      G++K     AR +F +L   +   +  +   Y   G 
Sbjct: 334 EHNRTSNLNIIAFTSLLDGYTKLGNVK----PAREIFNKLRDRDVVAWTAMIVGYVQNGL 389

Query: 542 WED 544
           W D
Sbjct: 390 WND 392



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 183/378 (48%), Gaps = 28/378 (7%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD--KMPLRDI 90
           C  +  + + K++ +++ L      +  + N L+  YAKSG +  AR + +  +    +I
Sbjct: 285 CANLEKLNIGKQIHAYI-LRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNI 343

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           I++ +LL  + + G+V+  R +F+K+  RD V++   I G+   G   +AL++F  M  +
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
             EP  YT  + L+  + L  L  GKQIH   +         V NAL  MYAK G I+ A
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVA 463

Query: 211 RWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           + +FD  N +  +VSW  MI    ++G  K+ I+LF+ M  +G+ PD +T   +L AC  
Sbjct: 464 KRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTH 523

Query: 270 TGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
            G ++   + ++++ E   +      +  MI  Y + G  ++A +    M    + PD  
Sbjct: 524 VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM---PIEPDNI 580

Query: 325 SISSVVSSC-----AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           +  S+++SC     A LA       V  + ++L    +     AL ++Y  CG  ++A  
Sbjct: 581 AWGSLLASCKIHKNADLAK------VAAERLLLIDPGNSGAYLALANVYSACGKWENAAQ 634

Query: 380 VFNMMPTRNV-----VSW 392
              +M  R V     +SW
Sbjct: 635 TRKLMKDRGVRKEKGISW 652


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/637 (39%), Positives = 392/637 (61%), Gaps = 42/637 (6%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL+ YAK G    A+ +FD+M +++I +WNAL+S + +SG  +   + F+KMP RD VS+
Sbjct: 183 LLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSW 242

Query: 125 NTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           N+ I+G++ +G++ EAL +FS+M  +   +P ++T  S L+ACA L  L  GKQIH  I+
Sbjct: 243 NSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYIL 302

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKNGQPKKC 241
                 +  V NAL  MYAK G ++ AR + +  R +N N++++  ++ GY K       
Sbjct: 303 RAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTK------- 355

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +  A  +F+ ++++D V WT MIVGY QN
Sbjct: 356 ----------------------------LGNVKPAREIFNKLRDRDVVAWTAMIVGYVQN 387

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   DAL LF  M++E   P+ +++++++S  + L  L HG+ +H  A+  G      V+
Sbjct: 388 GLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +ALI MY K G  + A  VF++ P   + +VSW SMI   AQ+G   EA+ L++++L   
Sbjct: 448 NALIAMYAKTGNINVAKRVFDL-PNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KPD  T+V VLSAC H  L E+G+ +++ ++ VH I P+L HYACMI+L GR+  + +A
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
              I+S+P +P+++ W +LL+ C +  +    ++AA  L  ++P N+G Y+ L+N+Y+AC
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           G+WE+ A  R  MK + V+K    SWI I N+VH F  ED  HP+ + IY+ ++++ +++
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           ++ GF P+T+ VLHD +EE K + + YHSEKLA+A+ L+  P   T +RIMKN+RVC DC
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPEN-TALRIMKNLRVCNDC 745

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +KF S ++GR II+RD+ RFHHF  G+CSC+D W
Sbjct: 746 HSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  234 bits (596), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 152/498 (30%), Positives = 253/498 (50%), Gaps = 78/498 (15%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            +L N L+ FYAK+G L +A  +FD+MPL+   SWN L+S +A+ G+ +  R L  +MP 
Sbjct: 45  VYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD 104

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            D VS+   I G+   G    A+ +F++M  +R  P+ +T  + L++CA    L  G++I
Sbjct: 105 CDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKI 164

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +V   LG  V V  +L +MYAK G+   A+ +FDRM  +N+ +WN +IS Y+++GQ 
Sbjct: 165 HSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQF 224

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
           +     F++M      PD                             +D V W +MI GY
Sbjct: 225 ELAASQFEKM------PD-----------------------------RDIVSWNSMISGY 249

Query: 299 TQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +Q G   +AL++F++ML+E  ++PD F+++S++S+CA L  L  G+ +H   +    +  
Sbjct: 250 SQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETS 309

Query: 358 LLVSSALIDMYCKCGVTD-----------------------DAWT----------VFNMM 384
             V +ALI MY K G  +                       D +T          +FN +
Sbjct: 310 GAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKL 369

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG- 443
             R+VV+W +MI GY QNG   +AL L+  ++ E  +P+S+T  ++LS      + E G 
Sbjct: 370 RDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGK 429

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVC 502
           Q H  +I A    TPS+ +   +I +  ++ +++ A  +   LP+    ++ W++++   
Sbjct: 430 QIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVAKRVF-DLPNGKKEIVSWTSMIMAL 486

Query: 503 AMKGDIKHGEMAARHLFE 520
           A  G  K     A +LFE
Sbjct: 487 AQHGLGKE----AINLFE 500



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 126/423 (29%), Positives = 205/423 (48%), Gaps = 78/423 (18%)

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           + H+  L    ++ D   G+ +H +I+   L   V++ N L   YAK G +  A  +FD 
Sbjct: 13  FAHI--LQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDE 70

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  ++  SWN +ISGY K G                               F+  R    
Sbjct: 71  MPLKSTFSWNTLISGYAKQGN------------------------------FEVSR---- 96

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            RL + + + D V WT +IVGY Q G  ++A+ +F +M+SE V P +F++S+V+SSCA  
Sbjct: 97  -RLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAAN 155

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG------VTDDAWTV---------- 380
            +L  G+ +H   V LG+   + V+++L++MY KCG      V  D  TV          
Sbjct: 156 QTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALI 215

Query: 381 ---------------FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDS 424
                          F  MP R++VSWNSMI+GY+Q G +LEAL ++ K+L E +LKPD+
Sbjct: 216 SLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDN 275

Query: 425 FTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           FT  S+LSAC + +    G Q H   + A    + ++ +   +I++  +S  V+ A  ++
Sbjct: 276 FTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGN--ALISMYAKSGGVEIARLIV 333

Query: 484 K-SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGR 541
           + +     N + +++LL      G++K     AR +F +L   +   +  +   Y   G 
Sbjct: 334 EHNRTSNLNIIAFTSLLDGYTKLGNVK----PAREIFNKLRDRDVVAWTAMIVGYVQNGL 389

Query: 542 WED 544
           W D
Sbjct: 390 WND 392



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 183/378 (48%), Gaps = 28/378 (7%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD--KMPLRDI 90
           C  +  + + K++ +++ L      +  + N L+  YAKSG +  AR + +  +    +I
Sbjct: 285 CANLEKLNIGKQIHAYI-LRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNI 343

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           I++ +LL  + + G+V+  R +F+K+  RD V++   I G+   G   +AL++F  M  +
Sbjct: 344 IAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNE 403

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
             EP  YT  + L+  + L  L  GKQIH   +         V NAL  MYAK G I+ A
Sbjct: 404 GPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVA 463

Query: 211 RWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           + +FD  N +  +VSW  MI    ++G  K+ I+LF+ M  +G+ PD +T   +L AC  
Sbjct: 464 KRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTH 523

Query: 270 TGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
            G ++   + ++++ E   +      +  MI  Y + G  ++A +    M    + PD  
Sbjct: 524 VGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESM---PIEPDNI 580

Query: 325 SISSVVSSC-----AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           +  S+++SC     A LA       V  + ++L    +     AL ++Y  CG  ++A  
Sbjct: 581 AWGSLLASCKIHKNADLAK------VAAERLLLIDPGNSGAYLALANVYSACGKWENAAQ 634

Query: 380 VFNMMPTRNV-----VSW 392
              +M  R V     +SW
Sbjct: 635 TRKLMKDRGVRKEKGISW 652


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 264/709 (37%), Positives = 398/709 (56%), Gaps = 69/709 (9%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P  T L N LL  Y K+G+   AR +FD  P  ++ ++NALLS  A +  + D+ +LF  
Sbjct: 38  PPPTHLLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFAS 97

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK--DRFEPTDYTHVSALNACAQLLDLR 173
           M  RD+VSYN  IAGF+  G    A++++  + +      P+  T  + + A + L D  
Sbjct: 98  MAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRA 157

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI-------------------------- 207
            G+Q H +I+    G N FV + L  MYAK G I                          
Sbjct: 158 LGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLL 217

Query: 208 -----DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                ++AR LF+ M +R+ ++W  M++G+ +NG   + ++ F+ M+  G+  D+ T  +
Sbjct: 218 RCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGS 277

Query: 263 ILGAC-----FQTGR------------------------------IDDAGRLFHVIKEKD 287
           IL AC      + G+                              I  A   F  +  K+
Sbjct: 278 ILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKN 337

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + WT +IVGY QNG  E+A+ +F+EM  + + PD F++ SV+SSCA LASL  G   H 
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHC 397

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW +++ GYAQ G+  E
Sbjct: 398 LALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKE 457

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            + L++K+L +++KPD  TF+ VLSAC  A   E+G ++F S+   HGI P  DHY CMI
Sbjct: 458 TIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMI 517

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L  RS  + +A + IK +P  P+++ W TLLS C ++GD++ G+ AA +L E++P N  
Sbjct: 518 DLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPA 577

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++L +M+A  G W  VA +R  M+ + VKK    SWI+  NKVH F ++D++HP ++ 
Sbjct: 578 SYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKG 637

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IYE+L  L  K+ E G+ P+   VLHD  + +KV  + +HSEKLA+A+ L+  PH + PI
Sbjct: 638 IYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEM-PI 696

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI+KN+RVC DCH   K  S I GR I++RD+ RFH F  G CSC D W
Sbjct: 697 RIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/704 (36%), Positives = 399/704 (56%), Gaps = 67/704 (9%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TFL+N ++H YA      YAR +FD++P  ++ SWN LL A++++G + ++ + F+K+P 
Sbjct: 41  TFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPD 100

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQ 177
           RD V++N  I G++  G    A++ ++ M +D     T  T ++ L   +    +  GKQ
Sbjct: 101 RDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQ 160

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV-------------- 223
           IHG+++       + V + L  MYA  G I  A+ +F  +++RN V              
Sbjct: 161 IHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGM 220

Query: 224 ----------------SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
                           SW  MI G  +NG  K+ I+ F+EM++ GL  D+    ++L AC
Sbjct: 221 IEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPAC 280

Query: 268 FQTGRIDD-----------------------------------AGRLFHVIKEKDNVCWT 292
              G I++                                   A  +F  +K+K+ V WT
Sbjct: 281 GGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWT 340

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            M+VGY Q G+ E+A+ +F +M    + PD +++   +S+CA ++SL  G   HGKA+  
Sbjct: 341 AMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITS 400

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+   + VS++L+ +Y KCG  DD+  +FN M  R+ VSW +M++ YAQ G+ +E + L+
Sbjct: 401 GLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLF 460

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           DK++Q  LKPD  T   V+SAC  A L E+GQ +F  +++ +GI PS+ HY+CMI+L  R
Sbjct: 461 DKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSR 520

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S  +++A+  I  +P  P+++ W+TLLS C  KG+++ G+ AA  L EL+P +   Y +L
Sbjct: 521 SGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLL 580

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           S++YA+ G+W+ VA +R  M+ KNVKK    SWI+   K+H F ++D + P  + IY +L
Sbjct: 581 SSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKL 640

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L  K+ + G+ P+T  V HD +E  KVK + YHSE+LA+A+ LI  P G  PIR+ KN
Sbjct: 641 EELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSG-QPIRVGKN 699

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH   K  S + GR I++RD+ RFH F  G CSC D W
Sbjct: 700 LRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 178/473 (37%), Gaps = 115/473 (24%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R  K IHG I+        F+ N +   YA       AR +FDR+   NL SWN ++  Y
Sbjct: 23  RYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAY 82

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT 292
            K G       L  EM+                              F  + ++D V W 
Sbjct: 83  SKAG-------LISEME----------------------------STFEKLPDRDGVTWN 107

Query: 293 TMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            +I GY+ +G    A+  +N M+ +      + ++ +++   +    +  G+ +HG+ + 
Sbjct: 108 VLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIK 167

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV---------------------- 389
           LG +  LLV S L+ MY   G   DA  VF  +  RN                       
Sbjct: 168 LGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQL 227

Query: 390 --------VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
                   VSW +MI G AQNG   EA+  + ++  + LK D + F SVL AC       
Sbjct: 228 FRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAIN 287

Query: 435 ----LHADLFERG-QNHFDSISA----------VHGITPSLDH--------YACMINLLG 471
               +HA +     Q+H    SA          +H      D         +  M+   G
Sbjct: 288 EGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYG 347

Query: 472 RSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG- 527
           ++   ++AV +   +      P+       +S CA    ++ G       F  + I +G 
Sbjct: 348 QTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQ-----FHGKAITSGL 402

Query: 528 -PYIMLSN----MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
             Y+ +SN    +Y  CG  +D   + + M  ++     A SW  + +   +F
Sbjct: 403 IHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRD-----AVSWTAMVSAYAQF 450


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/643 (37%), Positives = 386/643 (60%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +   +++ +A+   + D   +FD+MP RD VS+NT IAGF+  GF+++AL++  RMQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P   T V+ L A A +  L  GK IHG  +       V +  AL DMY+K G ++
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD M+ + +VSWN M+ GY++NG+P+K I +F++M   G++P  VT+   L AC 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   R+D A  +F+ +  + +V W  
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+GY QNG+  +AL  F+EM S  ++PD F++ SV+ + A+L+   H + +HG  +   
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V++AL+DMY KCG    A  +F+M+  R+V++WN+MI+GY  +G    AL L+D
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFD 540

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ +  ++P+  T++SV+SAC H+ L + G  HF S+   +G+ PS+DHY  M++LLGR+
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRA 600

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A D I+++P  P   ++  +L  C +  +I+ GE AA+ LFEL P   G +++L+
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+  +W  VA +R +M+ K +KK    S +E+ N+VH F S   THP+++ IY  L 
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L+ +++ AG+ P+T L+L D +++ + + +  HSEKLA+A+ L+    G T I + KN+
Sbjct: 721 ELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTT-IHVRKNL 778

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S + GR II+RD  RFHHF  G CSC D W
Sbjct: 779 RVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 157/509 (30%), Positives = 236/509 (46%), Gaps = 91/509 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVS--YNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+S  ++ GS+ +   +F+  PI D +   Y+T + G+A       AL    RM+ D  +
Sbjct: 87  LVSLFSKYGSINEAARVFE--PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  Y     L  C    DL+RGK+IHG+++  +   NVF    + +MYAK  +ID A  +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FDRM  R+LVSWN +I+G+ +NG  KK ++L   MQ  G  PD +T+  +L A       
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G ++ A  +F  + +K  V W +M+ GY
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG+ E A+ +F +ML E + P   +I   + +CA L  L  G+ VH     L +  D+
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V ++LI MY KC   D A  +FN +  R  VSWN+MI GYAQNG+  EAL  + ++   
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 419 NLKPDSFTFVSVLSA--------------------CLHADLF---------------ERG 443
            +KPDSFT VSV+ A                    CL  ++F                  
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLS 500
           +  FD IS  H IT     +  MI+  G       A+DL   +     +PN + + +++S
Sbjct: 505 RKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 501 VCAMKGDIKHGEMAARHL------FELEP 523
            C+  G +  G    RH       + LEP
Sbjct: 560 ACSHSGLVDEG---LRHFKSMKQDYGLEP 585



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 162/333 (48%), Gaps = 41/333 (12%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  + +  + ++    + G I++A R+F  I +K +  + TM+ GY +N   E AL   
Sbjct: 76  GLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFL 135

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M  +DV+P  ++ + ++  C   A L  G+ +HG+ +      ++   + +++MY KC
Sbjct: 136 CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC 195

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
              DDA+ +F+ MP R++VSWN++I G++QNG   +AL L  ++  E  +PDS T V+VL
Sbjct: 196 RQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL 255

Query: 432 SACLHADLFERGQN-HFDSISA-----VHGITPSLDHYA--------------------- 464
            A     L   G++ H  +I A     V+  T   D Y+                     
Sbjct: 256 PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVV 315

Query: 465 ---CMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
               M++   ++ + +KA+ + + +  +   P  +     L  CA  GD++ G+    H 
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV--HK 373

Query: 519 FELEPINAGPYIMLSN----MYAACGRWEDVAS 547
           F ++ +N G  I + N    MY+ C R  D+AS
Sbjct: 374 F-VDQLNLGSDISVMNSLISMYSKCKRV-DIAS 404


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 250/637 (39%), Positives = 371/637 (58%), Gaps = 36/637 (5%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL+  + +   ++D R LFDKM  RD V++   I G+A  G + E+L +F +M+++   P
Sbjct: 70  ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 129

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                V+ + ACA+L  + + + I   I       +V +  A+ DMYAK G ++ AR +F
Sbjct: 130 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 189

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQ 269
           DRM  +N++SW+ MI+ Y  +GQ +K +DLF+ M   G+ PD++T++++L AC      Q
Sbjct: 190 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQ 249

Query: 270 TGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
            GR                              I+DA  LF  + E+D V WT MI GY 
Sbjct: 250 MGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYA 309

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           + G   ++L+LF++M  E V PDK ++ +VV +CAKL +++  + +           D++
Sbjct: 310 ECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 369

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +A+IDM+ KCG  + A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +L+  
Sbjct: 370 LGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG 429

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           + P+  T VS+L AC HA L E G   F  +   + +   + HY C+++LLGR+  +D+A
Sbjct: 430 ILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEA 489

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           + LI+S+  + +  +W   L  C    D+   E AA  L EL+P N G YI+LSN+YA  
Sbjct: 490 LKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANA 549

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRWEDVA  R  M  + +KK   ++WIE+DNK H+F   D THP ++ IYE L  L  KL
Sbjct: 550 GRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKL 609

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           +  G+ P+T  VLHD  EE K+  +  HSEKLA+A+ LI  P   TPIRI+KN+RVCGDC
Sbjct: 610 ELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEH-TPIRIIKNLRVCGDC 668

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H F K  S I GR II+RD+NRFHHF  G CSC D W
Sbjct: 669 HTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 143/495 (28%), Positives = 232/495 (46%), Gaps = 70/495 (14%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           + GFA  G        F  + +    P +YT    + AC  L +L+ G+ IH  +    L
Sbjct: 2   VGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGL 61

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             + FV  AL DMY K  EI+ AR+LFD+M  R+LV+W +MI GY + G+  + + LF++
Sbjct: 62  DLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEK 121

Query: 248 MQLLGLNPDEVTVSNILGACFQTGR------IDD-------------------------- 275
           M+  G+ PD+V +  ++ AC + G       IDD                          
Sbjct: 122 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 181

Query: 276 ---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
              A  +F  ++EK+ + W+ MI  Y  +G+   AL LF  MLS  + PDK +++S++ +
Sbjct: 182 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 241

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C+ L +L  G+++H      G+D D  V +AL+DMY KC   +DA  +F+ MP R++V+W
Sbjct: 242 CSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTW 301

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----LHA-----DLFER 442
             MI GYA+ G   E+L L+DK+ +E + PD    V+V+ AC     +H      D  +R
Sbjct: 302 TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 361

Query: 443 GQNHFDSISAVHGI--------------------TPSLDHYACMINLLGRSSDVDKAVDL 482
            +   D I     I                      ++  ++ MI   G      KA+DL
Sbjct: 362 KKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 421

Query: 483 IKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYA 537
              +      PN +   +LL  C+  G ++ G      ++E   + A    Y  + ++  
Sbjct: 422 FPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLG 481

Query: 538 ACGRWEDVASIRSSM 552
             GR ++   +  SM
Sbjct: 482 RAGRLDEALKLIESM 496



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 183/412 (44%), Gaps = 85/412 (20%)

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR---------- 272
           M+ G+ K G    C   F+E+   G  PD  T+  ++ AC      Q GR          
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 273 --------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                               I+DA  LF  ++E+D V WT MI GY + GK  ++L+LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +M  E V PDK ++ +VV +CAKL +++  +++           D+++ +A+IDMY KCG
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCG 180

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +L   + PD  T  S+L 
Sbjct: 181 CVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLY 240

Query: 433 ACLHADLFERGQ--NHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPH 488
           AC      + G+  +H      V+     LDH+ C  ++++ G+  +++ A  L   +P 
Sbjct: 241 ACSDLKNLQMGRLIHHI-----VYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295

Query: 489 K----------------------------------PNSLIWSTLLSVCAMKGDIKHG--- 511
           +                                  P+ +   T++  CA  G +      
Sbjct: 296 RDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTI 355

Query: 512 -EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +   R  F+L+ I     I   +M+A CG  E    I   M+ KNV  ++A
Sbjct: 356 DDYIQRKKFQLDVILGTAMI---DMHAKCGCVESAREIFDRMEEKNVISWSA 404



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 146/332 (43%), Gaps = 46/332 (13%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+ G+ + G   +    F E++    RPD +++  V+ +C  L +L  G+++H      G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D D  V +AL+DMY KC   +DA  +F+ M  R++V+W  MI GYA+ G+  E+L L++
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 414 KLLQENLKPDSFTFVSVLSAC-----LHA-----DLFERGQNHFDSISAVHGITPSLDHY 463
           K+ +E + PD    V+V+ AC     +H      D  +R +   D I      T  +D Y
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG----TAMIDMY 176

Query: 464 A------------------------CMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWS 496
           A                         MI   G      KA+DL + +      P+ +  +
Sbjct: 177 AKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLA 236

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKS 554
           +LL  C+   +++ G +   H+     ++   ++   L +MY  C   ED   +   M  
Sbjct: 237 SLLYACSDLKNLQMGRL-IHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPE 295

Query: 555 KNVKKFAAY--SWIEIDNKVHKFVSEDRTHPE 584
           +++  +      + E  N     V  D+   E
Sbjct: 296 RDLVTWTVMIGGYAECGNANESLVLFDKMREE 327


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/633 (38%), Positives = 382/633 (60%), Gaps = 40/633 (6%)

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           SG +     +FDKMP R+ V++   I  FA  G +R+A+ +F  M+   + P  +T+ S 
Sbjct: 196 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 255

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNN 219
           L+AC +L  L  GKQ+H +++   L  +V V  +L DMYAK    G +D +R +F++M  
Sbjct: 256 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 315

Query: 220 RNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
            N++SW  +I+ Y+++G+  K+ I+LF +M    + P+  + S++L AC           
Sbjct: 316 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 375

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    ++GR++DA + F ++ EK+ V +  ++ GY +N K
Sbjct: 376 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 435

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E+A +LFNE+    +    F+ +S++S  A + ++  G+ +HG+ +  G   +  + +A
Sbjct: 436 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 495

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI MY +CG  + A+ VFN M  RNV+SW SMI G+A++G    AL ++ K+L+   KP+
Sbjct: 496 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 555

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             T+V+VLSAC H  +   GQ HF+S+   HGI P ++HYACM++LLGRS  + +A++ I
Sbjct: 556 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 615

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            S+P   ++L+W TLL  C + G+ + G  AA  + E EP +   YI+LSN++A+ G+W+
Sbjct: 616 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 675

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  IR SMK +N+ K A  SWIE++N+VH+F   + +HP+   IY+EL +L  K++E G
Sbjct: 676 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 735

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P+T  VLHD +EE+K + +  HSEK+A+A+ LI       PIRI KN+RVCGDCH  +
Sbjct: 736 YIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS-KPIRIFKNLRVCGDCHTAI 794

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K+ S   GR I++RDSNRFHH   G CSC D W
Sbjct: 795 KYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 249/494 (50%), Gaps = 63/494 (12%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGF 131
           GKL + + +   + L D +  N L+S +++ G  +  R +F+ M   RD VS++  ++ F
Sbjct: 63  GKLVHRKLMQSGLEL-DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 121

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGN 190
           AN     +A+  F  M +  F P +Y   + + AC+       G+ I+G +V  G L  +
Sbjct: 122 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEAD 181

Query: 191 VFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           V V   L DM+ KG G++  A  +FD+M  RNLV+W LMI+ + + G  +  IDLF +M+
Sbjct: 182 VCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 250 LLGLNPDEVTVSNILGACFQT--------------------------------------G 271
           L G  PD  T S++L AC +                                       G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVV 330
            +DD+ ++F  + E + + WT +I  Y Q+G+ +++A+ LF +M+S  +RP+ FS SSV+
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +C  L+  Y G+ V+  AV LG+     V ++LI MY + G  +DA   F+++  +N+V
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 421

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           S+N++++GYA+N +  EA  L++++    +   +FTF S+LS         +G+      
Sbjct: 422 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ----- 476

Query: 451 SAVHG--ITPSLDHYACMINLL----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             +HG  +        C+ N L     R  +++ A  +   +  + N + W+++++    
Sbjct: 477 --IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMIT---- 529

Query: 505 KGDIKHGEMAARHL 518
            G  KHG  A R L
Sbjct: 530 -GFAKHG-FATRAL 541



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 156/589 (26%), Positives = 253/589 (42%), Gaps = 108/589 (18%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A      M +    P   T+   L +C +  + + GK +H K++   L  +  V N L  
Sbjct: 28  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 87

Query: 200 MYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +Y+K G+ + AR +F+ M N R+LVSW+ M+S +  N    + I  F +M  LG  P+E 
Sbjct: 88  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 147

Query: 259 TVSNILGACFQ-------------------------------------TGRIDDAGRLFH 281
             + ++ AC                                       +G +  A ++F 
Sbjct: 148 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 207

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            + E++ V WT MI  + Q G   DA+ LF +M      PD+F+ SSV+S+C +L  L  
Sbjct: 208 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 267

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKC---GVTDDAWTVFNMMPTRNVVSWNSMING 398
           G+ +H + + LG+  D+ V  +L+DMY KC   G  DD+  VF  MP  NV+SW ++I  
Sbjct: 268 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 327

Query: 399 YAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD-----SISA 452
           Y Q+G+ D EA+ L+ K++  +++P+ F+F SVL AC +      G+  +       I++
Sbjct: 328 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 387

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLI----------------KSLPHKPNSLI-- 494
           V+ +  SL     M    GR  D  KA D++                K+L  +   L+  
Sbjct: 388 VNCVGNSL---ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 444

Query: 495 -------------WSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIMLSNMYAACG 540
                        +++LLS  A  G +  GE +  R L      N      L +MY+ CG
Sbjct: 445 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 504

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
             E    + + M+ +NV      SW  +     K     R             ++  K+ 
Sbjct: 505 NIEAAFQVFNEMEDRNV-----ISWTSMITGFAKHGFATRA-----------LEMFHKML 548

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA---YCLIKKPHGVTP 646
           E G  PN    +        V S C H   ++     +  + K HG+ P
Sbjct: 549 ETGTKPNEITYV-------AVLSACSHVGMISEGQKHFNSMYKEHGIVP 590



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 154/334 (46%), Gaps = 42/334 (12%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  YA+SG++  AR  FD +  ++++S+NA+                          
Sbjct: 393 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAI-------------------------- 426

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                + G+A    S EA  +F+ +       + +T  S L+  A +  + +G+QIHG++
Sbjct: 427 -----VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 481

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           + G    N  + NAL  MY++ G I+ A  +F+ M +RN++SW  MI+G+ K+G   + +
Sbjct: 482 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 541

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
           ++F +M   G  P+E+T   +L AC   G I +  + F+ + ++  +      +  M+  
Sbjct: 542 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 601

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-D 356
             ++G   +A+   N M    +  D     +++ +C    +   G+  H   ++L  + D
Sbjct: 602 LGRSGLLVEAMEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPD 656

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           D      L +++   G   D   +   M  RN++
Sbjct: 657 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 690



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 176/406 (43%), Gaps = 51/406 (12%)

Query: 205 GEIDKARWLFDRMNNRN----LVSWNLMISGYLK--NGQPKKCIDLFQEMQLLGLNPDEV 258
           G +  A    D M  +N    L ++++++   ++  N Q  K +   +++   GL  D V
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVH--RKLMQSGLELDSV 80

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
            ++ ++    + G  + A  +F  +  K D V W+ M+  +  N  E  A+  F +ML  
Sbjct: 81  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 140

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCK-CGVTD 375
              P+++  ++V+ +C+     + G++++G  V  G ++ D+ V   LIDM+ K  G   
Sbjct: 141 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 200

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A+ VF+ MP RN+V+W  MI  +AQ G   +A+ L+  +      PD FT+ SVLSAC 
Sbjct: 201 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 260

Query: 436 HADLFERGQN-------------------------------HFDSISAVHGITP--SLDH 462
              L   G+                                  D    V    P  ++  
Sbjct: 261 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 320

Query: 463 YACMINLLGRSSDVDK-AVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
           +  +I    +S + DK A++L   +     +PN   +S++L  C    D   GE    + 
Sbjct: 321 WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 380

Query: 519 FEL--EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +L    +N     ++S MYA  GR ED       +  KN+  + A
Sbjct: 381 VKLGIASVNCVGNSLIS-MYARSGRMEDARKAFDILFEKNLVSYNA 425


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/621 (38%), Positives = 370/621 (59%), Gaps = 36/621 (5%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F ++   DS +YN  I GF  K    EA+ +F  M ++  +P ++T    L  C++L 
Sbjct: 79  SIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQ 138

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  G+QIH  I+    G + FV+N L  MYA  GE++ AR +FD M+ RN+ +WN M +
Sbjct: 139 ALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFA 198

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------- 267
           GY K+G  ++ + LF EM  L +  DEVT+ ++L AC                       
Sbjct: 199 GYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKG 258

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G++D A RLF  +  +D V W+ MI GY+Q  +  +AL LF+EM 
Sbjct: 259 NPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQ 318

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
             ++ P++ ++ S++SSCA L +L  G+ VH       +   + + +AL+D Y KCG  +
Sbjct: 319 KANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVE 378

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            +  VF  MP +NV+SW  +I G A NGQ  +AL  +  +L++N++P+  TF+ VLSAC 
Sbjct: 379 SSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACS 438

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           HA L + G++ F S+S   GI P ++HY CM+++LGR+  +++A   IK++P +PN++IW
Sbjct: 439 HAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIW 498

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            TLL+ C +  +++ GE + + L  LEP ++G YI+LSN+YA+ GRWED   +R  MK K
Sbjct: 499 RTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEK 558

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            +KK    S IE+D  +H+F +ED  H ++E IY  +  ++K+++ AG+ PNT     D 
Sbjct: 559 GIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDA 618

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +E++K  S+ +HSEKLA+A+ LIK P G T IRI KN+RVC DCH   K  S +  R I+
Sbjct: 619 EEDDKESSVSHHSEKLAIAFGLIKSPPGTT-IRITKNLRVCTDCHNATKLVSKVFNREIV 677

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD  RFHHF  G+CSC D W
Sbjct: 678 VRDRTRFHHFKEGSCSCNDYW 698



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 187/379 (49%), Gaps = 78/379 (20%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+H YA  G++  AR +FD+M  R++ +WN++ + + +SG+ +++  LF +M   
Sbjct: 160 FVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLEL 219

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D                              RF+  + T VS L AC +L DL  G+ I+
Sbjct: 220 DI-----------------------------RFD--EVTLVSVLTACGRLADLELGEWIN 248

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +    L GN  +  +L DMYAK G++D AR LFD+M+ R++V+W+ MISGY +  + +
Sbjct: 249 RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCR 308

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR---------------------- 272
           + +DLF EMQ   ++P+E+T+ +IL +C      +TG+                      
Sbjct: 309 EALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALM 368

Query: 273 --------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                   ++ +  +F  +  K+ + WT +I G   NG+ + AL  F  ML ++V P+  
Sbjct: 369 DFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDV 428

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAW 378
           +   V+S+C+     + G V  G+ + + +  D  +         ++D+  + G+ ++A+
Sbjct: 429 TFIGVLSACS-----HAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAF 483

Query: 379 TVFNMMPTR-NVVSWNSMI 396
                MP + N V W +++
Sbjct: 484 QFIKNMPIQPNAVIWRTLL 502



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 183/370 (49%), Gaps = 43/370 (11%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D A  +F +++  +  ++N+MI G+     P + I LF+EM    + PDE T   IL  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 267 CFQ-----------------------------------TGRIDDAGRLFHVIKEKDNVCW 291
           C +                                    G ++ A R+F  + E++   W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            +M  GYT++G  E+ + LF+EML  D+R D+ ++ SV+++C +LA L  G+ ++     
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+  +  + ++L+DMY KCG  D A  +F+ M  R+VV+W++MI+GY+Q  +  EAL L
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDL 313

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-NHFDSISAVHGITPSLDHYACMINLL 470
           + ++ + N+ P+  T VS+LS+C      E G+  HF        +T +L     +++  
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLG--TALMDFY 371

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY- 529
            +   V+ ++++   +P K N L W+ L+   A  G    G+ A  + + +   N  P  
Sbjct: 372 AKCGSVESSIEVFGKMPVK-NVLSWTVLIQGLASNG---QGKKALEYFYLMLEKNVEPND 427

Query: 530 IMLSNMYAAC 539
           +    + +AC
Sbjct: 428 VTFIGVLSAC 437



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 149/323 (46%), Gaps = 42/323 (13%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +D A  +F  I E D+  +  MI G+T      +A++LF EM    V+PD+F+   ++  
Sbjct: 74  MDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKV 133

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C++L +L  G+ +H   +  G      V + LI MY  CG  + A  VF+ M  RNV +W
Sbjct: 134 CSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTW 193

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ--NHFDSI 450
           NSM  GY ++G   E + L+ ++L+ +++ D  T VSVL+AC      E G+  N +   
Sbjct: 194 NSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEE 253

Query: 451 SAVHG----ITPSLDHYA------------------------CMINLLGRSSDVDKAVDL 482
             + G    IT  +D YA                         MI+   ++S   +A+DL
Sbjct: 254 KGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDL 313

Query: 483 IKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-----PINAGPYIMLSN 534
              +      PN +   ++LS CA+ G ++ G+    H F  +      +  G  +M  +
Sbjct: 314 FHEMQKANIDPNEITMVSILSSCAVLGALETGKWV--HFFIKKKRMKLTVTLGTALM--D 369

Query: 535 MYAACGRWEDVASIRSSMKSKNV 557
            YA CG  E    +   M  KNV
Sbjct: 370 FYAKCGSVESSIEVFGKMPVKNV 392



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 50/292 (17%)

Query: 6   KLRQAIDTLYSRGQA---ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           + R+A+D  +   +A     E     ++  C  +  +E  K +   +     +   T L 
Sbjct: 306 RCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVT-LG 364

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
             L+ FYAK G +  + ++F KMP+++++SW  L                          
Sbjct: 365 TALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVL-------------------------- 398

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                I G A+ G  ++AL+ F  M +   EP D T +  L+AC+    +  G+ +   +
Sbjct: 399 -----IQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSM 453

Query: 183 VVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKK 240
                +   +     + D+  + G I++A      M    N V W  +    L + +  K
Sbjct: 454 SRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTL----LASCKVHK 509

Query: 241 CIDLFQE--MQLLGLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
            +++ +E   QL+ L P    D + +SNI  +    GR +DA ++   +KEK
Sbjct: 510 NVEIGEESLKQLIILEPTHSGDYILLSNIYAS---VGRWEDALKVRGEMKEK 558


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 271/787 (34%), Positives = 424/787 (53%), Gaps = 120/787 (15%)

Query: 26  YTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           + QL L C + ++   LA+ +  H+  + ++     + NRL+  Y KS    YAR LFD+
Sbjct: 15  FAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIV-NRLIDIYWKSSDFVYARKLFDE 73

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQ 142
           +P  D+I+   L++A++  G+++  R +F++ P+  RD+V YN  I G+++      A++
Sbjct: 74  IPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIE 133

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLL-DLRRGKQIHGKIVVGNLGGNVF--VRNALTD 199
           +F  M+   F+P D+T  S L+A   +  D R+  Q+HG +V    G  +F  V NAL  
Sbjct: 134 LFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVV--KFGIEIFPAVLNALLS 191

Query: 200 MYAK----------------------------------------GGEIDKARWLFDRMNN 219
           +Y K                                         G++  AR + D M  
Sbjct: 192 VYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTE 251

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------ 267
           +  ++WN MISGYL +G  +  + LF++M+LLG+  DE T ++++ AC            
Sbjct: 252 QPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQV 311

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT- 299
                                      ++ G++D A ++F+ +  KD + W T++ GY  
Sbjct: 312 HAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVN 371

Query: 300 ------------------------------QNGKEEDALILFNEMLSEDVRPDKFSISSV 329
                                         QNG  E AL LFN+M  +   P+ ++ +  
Sbjct: 372 AGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGA 431

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +++C+ L +L +G+ +H + V LG D  L V +A+I MY +CG+ + A T+F  MP  + 
Sbjct: 432 ITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDP 491

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSWNSMI    Q+G  ++A+ LY+++L+E + PD  TF++VLSAC HA L E G  +F+S
Sbjct: 492 VSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNS 551

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +   +GI P  DHYA MI+L  R+     A ++I S+P +  + IW  LL+ C   G++ 
Sbjct: 552 MLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMD 611

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
            G  AA  LF+L P + G Y++LSNMYA+ GRW DVA  R  M+ + VKK  A SW E++
Sbjct: 612 LGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVE 671

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
           NKVH F+ +D  HPE   IY  L KL  ++++ G+ P+TK VLHD + E K  ++  HSE
Sbjct: 672 NKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSE 731

Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
           KLA+A+ L+K P G T +R+ KN+R+CGDCH  +KF S ++GR I++RD  RFHHF  G 
Sbjct: 732 KLAVAFGLMKLPQGAT-VRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGE 790

Query: 690 CSCKDNW 696
           CSC++ W
Sbjct: 791 CSCRNYW 797



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/288 (19%), Positives = 118/288 (40%), Gaps = 52/288 (18%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    + A+   +  C+ +  +E  ++L + + ++    +T  + N ++  YA+ G +  
Sbjct: 420 GYEPNDYAFAGAITACSVLGALENGRQLHAQI-VHLGHDSTLSVGNAMITMYARCGIVEA 478

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +F  MP  D +SWN++                               IA     G  
Sbjct: 479 ARTMFLTMPFVDPVSWNSM-------------------------------IAALGQHGHG 507

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG---NLGGNVFVR 194
            +A++++ +M K+   P   T ++ L+AC+    +  G +    ++       G + + R
Sbjct: 508 VKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYAR 567

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             + D++ + G+   A+ + D M        W  +++G   +G     I+  +  +L  L
Sbjct: 568 --MIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAE--KLFKL 623

Query: 254 NPDE----VTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVC-WT 292
            P      V +SN+  +    GR +D  R   ++++    K+  C WT
Sbjct: 624 IPQHDGTYVLLSNMYASL---GRWNDVARTRKLMRDRGVKKEPACSWT 668


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/633 (38%), Positives = 382/633 (60%), Gaps = 40/633 (6%)

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           SG +     +FDKMP R+ V++   I  FA  G +R+A+ +F  M+   + P  +T+ S 
Sbjct: 178 SGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSV 237

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNN 219
           L+AC +L  L  GKQ+H +++   L  +V V  +L DMYAK    G +D +R +F++M  
Sbjct: 238 LSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPE 297

Query: 220 RNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
            N++SW  +I+ Y+++G+  K+ I+LF +M    + P+  + S++L AC           
Sbjct: 298 HNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ 357

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    ++GR++DA + F ++ EK+ V +  ++ GY +N K
Sbjct: 358 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 417

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E+A +LFNE+    +    F+ +S++S  A + ++  G+ +HG+ +  G   +  + +A
Sbjct: 418 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNA 477

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI MY +CG  + A+ VFN M  RNV+SW SMI G+A++G    AL ++ K+L+   KP+
Sbjct: 478 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 537

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             T+V+VLSAC H  +   GQ HF+S+   HGI P ++HYACM++LLGRS  + +A++ I
Sbjct: 538 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 597

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            S+P   ++L+W TLL  C + G+ + G  AA  + E EP +   YI+LSN++A+ G+W+
Sbjct: 598 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 657

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  IR SMK +N+ K A  SWIE++N+VH+F   + +HP+   IY+EL +L  K++E G
Sbjct: 658 DVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMG 717

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P+T  VLHD +EE+K + +  HSEK+A+A+ LI       PIRI KN+RVCGDCH  +
Sbjct: 718 YIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS-KPIRIFKNLRVCGDCHTAI 776

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K+ S   GR I++RDSNRFHH   G CSC D W
Sbjct: 777 KYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 143/494 (28%), Positives = 249/494 (50%), Gaps = 63/494 (12%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGF 131
           GKL + + +   + L D +  N L+S +++ G  +  R +F+ M   RD VS++  ++ F
Sbjct: 45  GKLVHRKLMQSGLEL-DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCF 103

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGN 190
           AN     +A+  F  M +  F P +Y   + + AC+       G+ I+G +V  G L  +
Sbjct: 104 ANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEAD 163

Query: 191 VFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           V V   L DM+ KG G++  A  +FD+M  RNLV+W LMI+ + + G  +  IDLF +M+
Sbjct: 164 VCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDME 223

Query: 250 LLGLNPDEVTVSNILGACFQT--------------------------------------G 271
           L G  PD  T S++L AC +                                       G
Sbjct: 224 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 283

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVV 330
            +DD+ ++F  + E + + WT +I  Y Q+G+ +++A+ LF +M+S  +RP+ FS SSV+
Sbjct: 284 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 343

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +C  L+  Y G+ V+  AV LG+     V ++LI MY + G  +DA   F+++  +N+V
Sbjct: 344 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 403

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           S+N++++GYA+N +  EA  L++++    +   +FTF S+LS         +G+      
Sbjct: 404 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQ----- 458

Query: 451 SAVHG--ITPSLDHYACMINLL----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             +HG  +        C+ N L     R  +++ A  +   +  + N + W+++++    
Sbjct: 459 --IHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMIT---- 511

Query: 505 KGDIKHGEMAARHL 518
            G  KHG  A R L
Sbjct: 512 -GFAKHG-FATRAL 523



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 156/589 (26%), Positives = 253/589 (42%), Gaps = 108/589 (18%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A      M +    P   T+   L +C +  + + GK +H K++   L  +  V N L  
Sbjct: 10  AFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLIS 69

Query: 200 MYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +Y+K G+ + AR +F+ M N R+LVSW+ M+S +  N    + I  F +M  LG  P+E 
Sbjct: 70  LYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEY 129

Query: 259 TVSNILGACFQ-------------------------------------TGRIDDAGRLFH 281
             + ++ AC                                       +G +  A ++F 
Sbjct: 130 CFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFD 189

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            + E++ V WT MI  + Q G   DA+ LF +M      PD+F+ SSV+S+C +L  L  
Sbjct: 190 KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLAL 249

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKC---GVTDDAWTVFNMMPTRNVVSWNSMING 398
           G+ +H + + LG+  D+ V  +L+DMY KC   G  DD+  VF  MP  NV+SW ++I  
Sbjct: 250 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 309

Query: 399 YAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD-----SISA 452
           Y Q+G+ D EA+ L+ K++  +++P+ F+F SVL AC +      G+  +       I++
Sbjct: 310 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIAS 369

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLI----------------KSLPHKPNSLI-- 494
           V+ +  SL     M    GR  D  KA D++                K+L  +   L+  
Sbjct: 370 VNCVGNSL---ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 426

Query: 495 -------------WSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIMLSNMYAACG 540
                        +++LLS  A  G +  GE +  R L      N      L +MY+ CG
Sbjct: 427 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 486

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
             E    + + M+ +NV      SW  +     K     R             ++  K+ 
Sbjct: 487 NIEAAFQVFNEMEDRNV-----ISWTSMITGFAKHGFATRA-----------LEMFHKML 530

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA---YCLIKKPHGVTP 646
           E G  PN    +        V S C H   ++     +  + K HG+ P
Sbjct: 531 ETGTKPNEITYV-------AVLSACSHVGMISEGQKHFNSMYKEHGIVP 572



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 154/334 (46%), Gaps = 42/334 (12%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  YA+SG++  AR  FD +  ++++S+NA+                          
Sbjct: 375 NSLISMYARSGRMEDARKAFDILFEKNLVSYNAI-------------------------- 408

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                + G+A    S EA  +F+ +       + +T  S L+  A +  + +G+QIHG++
Sbjct: 409 -----VDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL 463

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           + G    N  + NAL  MY++ G I+ A  +F+ M +RN++SW  MI+G+ K+G   + +
Sbjct: 464 LKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRAL 523

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
           ++F +M   G  P+E+T   +L AC   G I +  + F+ + ++  +      +  M+  
Sbjct: 524 EMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDL 583

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-D 356
             ++G   +A+   N M    +  D     +++ +C    +   G+  H   ++L  + D
Sbjct: 584 LGRSGLLVEAMEFINSM---PLMADALVWRTLLGACRVHGNTELGR--HAAEMILEQEPD 638

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           D      L +++   G   D   +   M  RN++
Sbjct: 639 DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 672



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 176/406 (43%), Gaps = 51/406 (12%)

Query: 205 GEIDKARWLFDRMNNRN----LVSWNLMISGYLK--NGQPKKCIDLFQEMQLLGLNPDEV 258
           G +  A    D M  +N    L ++++++   ++  N Q  K +   +++   GL  D V
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVH--RKLMQSGLELDSV 62

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
            ++ ++    + G  + A  +F  +  K D V W+ M+  +  N  E  A+  F +ML  
Sbjct: 63  VLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLEL 122

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCK-CGVTD 375
              P+++  ++V+ +C+     + G++++G  V  G ++ D+ V   LIDM+ K  G   
Sbjct: 123 GFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLG 182

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A+ VF+ MP RN+V+W  MI  +AQ G   +A+ L+  +      PD FT+ SVLSAC 
Sbjct: 183 SAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 242

Query: 436 HADLFERGQN-------------------------------HFDSISAVHGITP--SLDH 462
              L   G+                                  D    V    P  ++  
Sbjct: 243 ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 302

Query: 463 YACMINLLGRSSDVDK-AVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
           +  +I    +S + DK A++L   +     +PN   +S++L  C    D   GE    + 
Sbjct: 303 WTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 362

Query: 519 FEL--EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +L    +N     ++S MYA  GR ED       +  KN+  + A
Sbjct: 363 VKLGIASVNCVGNSLIS-MYARSGRMEDARKAFDILFEKNLVSYNA 407


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/689 (37%), Positives = 393/689 (57%), Gaps = 59/689 (8%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           +N ++  Y ++ K   AR+LFD+MP RD+ SWN +L+ + R+  + D R LFD MP +D 
Sbjct: 83  YNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV 142

Query: 122 VSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTD----YTHVSALNACAQLL------ 170
           VS+N+ ++G+A  G+  EA +VF  M +K+          Y H   +     L       
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202

Query: 171 DLRRGKQIHGKIVVGNLGGN-------VFVRNALT-----DMYAKGGEIDKARWLFDRMN 218
           DL     + G  V     G+       + VR+A++       YA+GG + +AR LFD   
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---- 274
            R++ +W  M+SGY++NG   +    F EM       +EV+ + ++    QT ++D    
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 275 ---------------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                       A + F ++ ++D V W  +I GY Q+G  E+A
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L +F E+  +    ++ +    +S+CA +A+L  G+ +HG+AV +G      V +AL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG  D+A   F  +  ++VVSWN+M+ GYA++G   +AL +++ +    +KPD  T 
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           V VLSAC H  L +RG  +F S++  +G+ P+  HY CMI+LLGR+  +++A DLI+++P
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P +  W  LL    + G+ + GE AA  +F++EP N+G Y++LSN+YAA GRW D   
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +RS M+   V+K   YSW+E+ NK+H F   D +HPE E IY  L +L  K++E G+   
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           TKLVLHD +EEEK   + YHSEKLA+A+ ++  P G  PIR+MKN+RVC DCH  +K  S
Sbjct: 679 TKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGG-RPIRVMKNLRVCEDCHSAIKHIS 737

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I+GR IILRDS+RFHHF  G CSC D W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 207/451 (45%), Gaps = 57/451 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM- 147
           DI+ WN  +S H R+G       +F+ MP R SVSYN  I+G+        A  +F +M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 148 QKDRFE----PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           ++D F      T Y     L    +L DL   K             +V   N+L   YA+
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-------------DVVSWNSLLSGYAQ 154

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D+AR +FD M  +N +SWN +++ Y+ NG+ ++   LF+       + D ++ + +
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWDLISWNCL 210

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           +G   +  ++ DA  LF  +  +D + W TMI GY Q G    A  LF+E  + DV    
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV---- 266

Query: 324 FSISSVVSSCAKLASLYHGQV----------VHGKAVVLG--------VDDDLLVS---- 361
           F+ +++VS   +   L   +           V   A++ G        +  +L  S    
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 362 -----SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
                + +I  Y + G    A   F+MMP R+ VSW ++I GYAQ+G   EAL ++ ++ 
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 417 QENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           Q+    +  TF   LS C      E G Q H  ++   +G    + +   ++ +  +   
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGS 444

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +D+A D  + +  K + + W+T+L+  A  G
Sbjct: 445 IDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 145/292 (49%), Gaps = 36/292 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F    ++  Y ++G L  A+  FD+MP ++ +S+NA+++ + ++  +   R LF+ MP 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325

Query: 119 RDSVSYNTA-------------------------------IAGFANKGFSREALQVFSRM 147
           R+  S+NT                                IAG+A  G   EAL +F  +
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           ++D       T   AL+ CA +  L  GKQIHG+ V    G   FV NAL  MY K G I
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D+A   F+ +  +++VSWN M++GY ++G  ++ + +F+ M+  G+ PDE+T+  +L AC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 268 FQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM 314
             TG +D     F+ + +   V      +T MI    + G+ E+A  L   M
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNM 557



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 169/368 (45%), Gaps = 54/368 (14%)

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-------------------------QL 250
           R+ + +++ WN  IS +++NG     + +F  M                          L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 251 LGLNP--DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
               P  D  + + +L    +  R+ DA RLF ++ EKD V W +++ GY QNG  ++A 
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALID 366
            +F+ M      P+K SI    S    LA+  H   +    ++     D DL+  + L+ 
Sbjct: 163 EVFDNM------PEKNSI----SWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMG 212

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
            + +     DA  +F+ MP R+ +SWN+MI+GYAQ G   +A  L+D    E+   D FT
Sbjct: 213 GFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD----ESPTRDVFT 268

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           + +++S  +   + +  +  FD +   + ++     Y  MI    ++  +D A +L +S+
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESM 323

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDV 545
           P + N   W+T+++     GDI      AR  F++ P  +   +  +   YA  G +E+ 
Sbjct: 324 PCR-NISSWNTMITGYGQIGDIAQ----ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 546 ASIRSSMK 553
            ++   +K
Sbjct: 379 LNMFVEIK 386



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 119/267 (44%), Gaps = 58/267 (21%)

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L   ++  L + G  +F  ++  + +TP+  HY CMI+LLGR   +++            
Sbjct: 771 LLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEEGA---------- 820

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
                  LL    + G+ + GE AA+  F++ P N+G                      S
Sbjct: 821 -------LLGASRIHGNTELGEKAAQMFFKMGPQNSGI---------------------S 852

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+   V+K   YSW E+ NK+H F        E E I              GF     L
Sbjct: 853 KMRDVGVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI--------------GFLEELDL 898

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN-IRVCGDCHLFMKFASDI 669
            +   +EEEK +++ Y SE LA A  ++  P G  P R+MK  + VC DC   +K  S I
Sbjct: 899 KMR-EREEEKERTLKYLSENLAAALGILTIPVG-RPNRVMKKRVYVCEDCRSAIKHMSKI 956

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +GR I LRDS+RF+  +   CSC + W
Sbjct: 957 VGRLITLRDSHRFNESI---CSCGEYW 980



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 32/160 (20%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G++     +   +  C  +  +EL K++        Y     F+ N LL  Y K G +  
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY-GTGCFVGNALLAMYFKCGSIDE 447

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A D F+ +  +D++SWN +L+ +AR                                GF 
Sbjct: 448 ANDTFEGIEEKDVVSWNTMLAGYAR-------------------------------HGFG 476

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           R+AL VF  M+    +P + T V  L+AC+    L RG +
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTE 516


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/689 (37%), Positives = 393/689 (57%), Gaps = 59/689 (8%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           +N ++  Y ++ K   AR+LFD+MP RD+ SWN +L+ + R+  + D R LFD MP +D 
Sbjct: 83  YNAMISGYLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDV 142

Query: 122 VSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTD----YTHVSALNACAQLL------ 170
           VS+N+ ++G+A  G+  EA +VF  M +K+          Y H   +     L       
Sbjct: 143 VSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDW 202

Query: 171 DLRRGKQIHGKIVVGNLGGN-------VFVRNALT-----DMYAKGGEIDKARWLFDRMN 218
           DL     + G  V     G+       + VR+A++       YA+GG + +AR LFD   
Sbjct: 203 DLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESP 262

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---- 274
            R++ +W  M+SGY++NG   +    F EM       +EV+ + ++    QT ++D    
Sbjct: 263 TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMP----EKNEVSYNAMIAGYVQTKKMDIARE 318

Query: 275 ---------------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                       A + F ++ ++D V W  +I GY Q+G  E+A
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L +F E+  +    ++ +    +S+CA +A+L  G+ +HG+AV +G      V +AL+ M
Sbjct: 379 LNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAM 438

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG  D+A   F  +  ++VVSWN+M+ GYA++G   +AL +++ +    +KPD  T 
Sbjct: 439 YFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITM 498

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           V VLSAC H  L +RG  +F S++  +G+ P+  HY CMI+LLGR+  +++A DLI+++P
Sbjct: 499 VGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMP 558

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P +  W  LL    + G+ + GE AA  +F++EP N+G Y++LSN+YAA GRW D   
Sbjct: 559 FQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADK 618

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +RS M+   V+K   YSW+E+ NK+H F   D +HPE E IY  L +L  K++E G+   
Sbjct: 619 MRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSL 678

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           TKLVLHD +EEEK   + YHSEKLA+A+ ++  P G  PIR+MKN+RVC DCH  +K  S
Sbjct: 679 TKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGG-RPIRVMKNLRVCEDCHSAIKHIS 737

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I+GR IILRDS+RFHHF  G CSC D W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 207/451 (45%), Gaps = 57/451 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM- 147
           DI+ WN  +S H R+G       +F+ MP R SVSYN  I+G+        A  +F +M 
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQMP 107

Query: 148 QKDRFE----PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           ++D F      T Y     L    +L DL   K             +V   N+L   YA+
Sbjct: 108 ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-------------DVVSWNSLLSGYAQ 154

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D+AR +FD M  +N +SWN +++ Y+ NG+ ++   LF+       + D ++ + +
Sbjct: 155 NGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKS----DWDLISWNCL 210

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           +G   +  ++ DA  LF  +  +D + W TMI GY Q G    A  LF+E  + DV    
Sbjct: 211 MGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV---- 266

Query: 324 FSISSVVSSCAKLASLYHGQV----------VHGKAVVLG--------VDDDLLVS---- 361
           F+ +++VS   +   L   +           V   A++ G        +  +L  S    
Sbjct: 267 FTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCR 326

Query: 362 -----SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
                + +I  Y + G    A   F+MMP R+ VSW ++I GYAQ+G   EAL ++ ++ 
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIK 386

Query: 417 QENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           Q+    +  TF   LS C      E G Q H  ++   +G    + +   ++ +  +   
Sbjct: 387 QDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGS 444

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +D+A D  + +  K + + W+T+L+  A  G
Sbjct: 445 IDEANDTFEGIEEK-DVVSWNTMLAGYARHG 474



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 145/292 (49%), Gaps = 36/292 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F    ++  Y ++G L  A+  FD+MP ++ +S+NA+++ + ++  +   R LF+ MP 
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPC 325

Query: 119 RDSVSYNTA-------------------------------IAGFANKGFSREALQVFSRM 147
           R+  S+NT                                IAG+A  G   EAL +F  +
Sbjct: 326 RNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEI 385

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           ++D       T   AL+ CA +  L  GKQIHG+ V    G   FV NAL  MY K G I
Sbjct: 386 KQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSI 445

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D+A   F+ +  +++VSWN M++GY ++G  ++ + +F+ M+  G+ PDE+T+  +L AC
Sbjct: 446 DEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSAC 505

Query: 268 FQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM 314
             TG +D     F+ + +   V      +T MI    + G+ E+A  L   M
Sbjct: 506 SHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNM 557



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 169/368 (45%), Gaps = 54/368 (14%)

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-------------------------QL 250
           R+ + +++ WN  IS +++NG     + +F  M                          L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 251 LGLNP--DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
               P  D  + + +L    +  R+ DA RLF ++ EKD V W +++ GY QNG  ++A 
Sbjct: 103 FDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAR 162

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALID 366
            +F+ M      P+K SI    S    LA+  H   +    ++     D DL+  + L+ 
Sbjct: 163 EVFDNM------PEKNSI----SWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMG 212

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
            + +     DA  +F+ MP R+ +SWN+MI+GYAQ G   +A  L+D    E+   D FT
Sbjct: 213 GFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFD----ESPTRDVFT 268

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           + +++S  +   + +  +  FD +   + ++     Y  MI    ++  +D A +L +S+
Sbjct: 269 WTAMVSGYVQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESM 323

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDV 545
           P + N   W+T+++     GDI      AR  F++ P  +   +  +   YA  G +E+ 
Sbjct: 324 PCR-NISSWNTMITGYGQIGDIAQ----ARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 546 ASIRSSMK 553
            ++   +K
Sbjct: 379 LNMFVEIK 386



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 32/160 (20%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G++     +   +  C  +  +EL K++        Y     F+ N LL  Y K G +  
Sbjct: 389 GESLNRATFGCALSTCADIAALELGKQIHGQAVKMGY-GTGCFVGNALLAMYFKCGSIDE 447

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A D F+ +  +D++SWN +L+ +AR                                GF 
Sbjct: 448 ANDTFEGIEEKDVVSWNTMLAGYAR-------------------------------HGFG 476

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           R+AL VF  M+    +P + T V  L+AC+    L RG +
Sbjct: 477 RQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTE 516


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 269/697 (38%), Positives = 396/697 (56%), Gaps = 56/697 (8%)

Query: 53  FYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRAL 112
           FY  N     N L+  Y++ G++  AR +FD+M  ++IISWN++++ + ++   Q+ + +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP-----TDYTHVSALNACA 167
           FDKM  R+++S+N  ++G+ N G   EA +VF RM +            Y     ++   
Sbjct: 152 FDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 168 QLLDLRRGKQIHGKIVVGNLGG--------------------NVFVRNALTDMYAKGGEI 207
            L      K +    V+  LGG                    +V  R  +   Y + G +
Sbjct: 212 TLFWQMPEKNVVSWTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQ-----------PKK--------------CI 242
            +AR LFD M  RN+VSW  MI+GY++N Q           P+K              C 
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG 329

Query: 243 DLFQEMQLLGLNP-DEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
            L +  +L    P   V   N +  CF Q G +  A ++F  ++EKD   W+ MI  Y +
Sbjct: 330 RLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYER 389

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G E DAL LF  M  E +RP+  S+ SV+S CA LA+L HG+ +H + V    D D+ V
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +S L+ MY KCG    A  VF+    ++VV WNS+I GYAQ+G  +EAL ++  +    +
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            PD  TFV VLSAC +    ++G   F+S+   + +   ++HYACM++LLGR+  +++A+
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +P + +++IW  LL  C     +   E+AA+ L  LEP NAGP+I+LSN+YA+ G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT-HPETEIIYEELSKLIKKL 599
           RW+DVA +R +M+ + V K+   SWI ++ KVHKF   D + HPE   I   L  L   L
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLL 689

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           +EAG+ P+   VLHD  EEEKV+S+ YHSEKLA+AY L+K P G+ PIR+MKN+RVCGDC
Sbjct: 690 REAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGM-PIRVMKNLRVCGDC 748

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +K  + + GR IILRD+NRFHHF  G+CSC+D W
Sbjct: 749 HAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 168/366 (45%), Gaps = 76/366 (20%)

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDY--THVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           F+  G+S  +  +F R+  +RF  +++  +  S +   ++L  + + + +  ++      
Sbjct: 71  FSQPGYSMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEM----RD 126

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+   N++   Y +     +A+ +FD+M+ RN +SWN ++SGY+ NG   +  ++F  M
Sbjct: 127 KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 249 -------------------------QLLGLNPDEVTVS--NILGACFQTGRIDDAGRLFH 281
                                     L    P++  VS   +LG   Q GRID+A RLF 
Sbjct: 187 PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFD 246

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
           ++ EKD V  T MI GY Q G+  +A +LF+EM      P +    +VVS    +     
Sbjct: 247 MMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEM------PRR----NVVSWTTMITGYVQ 296

Query: 342 GQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            Q V     +  V  + + +  +A++  Y  CG  D+A  +FN MP ++VV+ N+MI  +
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 400 AQNGQ-------------------------------DLEALALYDKLLQENLKPDSFTFV 428
            QNG+                               +L+AL L+  + +E ++P+  + +
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 429 SVLSAC 434
           SVLS C
Sbjct: 417 SVLSVC 422


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/769 (34%), Positives = 411/769 (53%), Gaps = 115/769 (14%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           LA+ + +HM  + ++P    L NRL+  Y+KS KL YAR LFD++P  DI++   L++A+
Sbjct: 31  LARPVHAHMIASGFQPRGHIL-NRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAY 89

Query: 101 ARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
           + +G ++  R +F   P+  RDSV YN  I  +++      A+++F  MQ+D F P +YT
Sbjct: 90  SAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYT 149

Query: 159 HVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGE---------ID 208
             S L A A + +  +  +Q+H  +V    G    V NAL   Y K            + 
Sbjct: 150 FTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMA 209

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLK-----------NGQPKK----------------- 240
           +AR LFD M NR+ +SW  +I+GY+K           NG  KK                 
Sbjct: 210 EARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGL 269

Query: 241 ---CIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------ 267
                ++F++M +  +  DE T ++++  C                              
Sbjct: 270 YLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMP 329

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT------------------- 299
                    ++ G++D A  +F+ + E+D V W  ++ GY                    
Sbjct: 330 VNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKN 389

Query: 300 ------------QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
                       Q G  E+AL  FN M  +   P  ++ +  + SC+ L SL HG+ +H 
Sbjct: 390 ILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHA 449

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           + V  G +  L   +ALI MY +CGV D A  +F  MP  + +SWN+MI    Q+GQ  +
Sbjct: 450 QVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQ 509

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ L++++L+E + PD  +F++V+SAC HA L + G+ +FDS+  V+G+ P  +HYA +I
Sbjct: 510 AIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARII 569

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LL R+    +A ++++S+P +P + IW  LL+ C + G+I  G  AA  LFEL+P + G
Sbjct: 570 DLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDG 629

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++LSNMYA  G+W D+A +R  M+ + VKK    SWIE++NKVH F+  D  HPE   
Sbjct: 630 TYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQ 689

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IY  L +L+ ++++ G+ P+TK VLHD + + K   +  HSEKLA+AY  +K PHG T +
Sbjct: 690 IYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGAT-V 748

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+ KN+R+CGDCH   KF S ++GR I++RD  RFHHF  G CSC D W
Sbjct: 749 RVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 145/261 (55%), Gaps = 3/261 (1%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF---LHNRLLHFYAKSGKLFYAR 79
           E  +T ++  C       L K + ++       P       ++N L+ FY K GK+  A+
Sbjct: 289 EFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQ 348

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           ++F+KMP RD++SWN +LS +     + + ++ F++MP ++ +S+   I+G A  GF+ E
Sbjct: 349 EIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEE 408

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL+ F+RM+   FEP DY    A+ +C+ L  L+ G+Q+H ++V      ++   NAL  
Sbjct: 409 ALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALIT 468

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYA+ G +D A  LF  M   + +SWN MI+   ++GQ  + I+LF+EM   G+ PD ++
Sbjct: 469 MYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPDRIS 528

Query: 260 VSNILGACFQTGRIDDAGRLF 280
              ++ AC   G + +  + F
Sbjct: 529 FLTVISACSHAGLVKEGRKYF 549


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 269/697 (38%), Positives = 396/697 (56%), Gaps = 56/697 (8%)

Query: 53  FYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRAL 112
           FY  N     N L+  Y++ G++  AR +FD+M  ++IISWN++++ + ++   Q+ + +
Sbjct: 92  FYCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNM 151

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP-----TDYTHVSALNACA 167
           FDKM  R+++S+N  ++G+ N G   EA +VF RM +            Y     ++   
Sbjct: 152 FDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 168 QLLDLRRGKQIHGKIVVGNLGG--------------------NVFVRNALTDMYAKGGEI 207
            L      K +    V+  LGG                    +V  R  +   Y + G +
Sbjct: 212 TLFWQMPEKNVVSWTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRL 269

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQ-----------PKK--------------CI 242
            +AR LFD M  RN+VSW  MI+GY++N Q           P+K              C 
Sbjct: 270 VEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCG 329

Query: 243 DLFQEMQLLGLNP-DEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
            L +  +L    P   V   N +  CF Q G +  A ++F  ++EKD   W+ MI  Y +
Sbjct: 330 RLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYER 389

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G E DAL LF  M  E +RP+  S+ SV+S CA LA+L HG+ +H + V    D D+ V
Sbjct: 390 KGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYV 449

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +S L+ MY KCG    A  VF+    ++VV WNS+I GYAQ+G  +EAL ++  +    +
Sbjct: 450 ASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            PD  TFV VLSAC +    ++G   F+S+   + +   ++HYACM++LLGR+  +++A+
Sbjct: 510 MPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAM 569

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +P + +++IW  LL  C     +   E+AA+ L  LEP NAGP+I+LSN+YA+ G
Sbjct: 570 DLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQG 629

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT-HPETEIIYEELSKLIKKL 599
           RW+DVA +R +M+ + V K+   SWI ++ KVHKF   D + HPE   I   L  L   L
Sbjct: 630 RWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLL 689

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           +EAG+ P+   VLHD  EEEKV+S+ YHSEKLA+AY L+K P G+ PIR+MKN+RVCGDC
Sbjct: 690 REAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGM-PIRVMKNLRVCGDC 748

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +K  + + GR IILRD+NRFHHF  G+CSC+D W
Sbjct: 749 HAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 168/366 (45%), Gaps = 76/366 (20%)

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDY--THVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           F+  G+S  +  +F R+  +RF  +++  +  S +   ++L  + + + +  ++      
Sbjct: 71  FSQPGYSMFSGLMFFRLVLNRFYCSNFIISRNSLITRYSRLGQIEKARVVFDEM----RD 126

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+   N++   Y +     +A+ +FD+M+ RN +SWN ++SGY+ NG   +  ++F  M
Sbjct: 127 KNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 249 -------------------------QLLGLNPDEVTVS--NILGACFQTGRIDDAGRLFH 281
                                     L    P++  VS   +LG   Q GRID+A RLF 
Sbjct: 187 PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFD 246

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
           ++ EKD V  T MI GY Q G+  +A +LF+EM      P +    +VVS    +     
Sbjct: 247 MMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEM------PRR----NVVSWTTMITGYVQ 296

Query: 342 GQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            Q V     +  V  + + +  +A++  Y  CG  D+A  +FN MP ++VV+ N+MI  +
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 400 AQNGQ-------------------------------DLEALALYDKLLQENLKPDSFTFV 428
            QNG+                               +L+AL L+  + +E ++P+  + +
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 429 SVLSAC 434
           SVLS C
Sbjct: 417 SVLSVC 422


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/643 (37%), Positives = 384/643 (59%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +   +++ +A+   + D   +FD+MP RD VS+NT IAGF+  GF+++AL++  RMQ
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P   T V+ L A A +  L  GK IHG  +       V +  AL DMY+K G ++
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD M+ + +VSWN M+ GY++NG+P+K I +F++M   G++P  VT+   L AC 
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   R+D A  +F+ +  + +V W  
Sbjct: 361 DLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNA 420

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+GY QNG+  +AL  F+EM S  ++PD F++ SV+ + A+L+   H + +HG  +   
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V++AL+DMY KCG    A  +F+M+  R+V++WN+MI+GY  +G    AL L+D
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFD 540

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ +  ++P+  T++SV+SAC H+ L + G  HF S+   +G+ PS+DHY  M++LLGR+
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRA 600

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A D I+++P  P   ++      C +  +I+ GE AA+ LFEL P   G +++L+
Sbjct: 601 GRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLA 660

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+  +W  VA +R +M+ K +KK    S +E+ N+VH F S   THP+++ IY  L 
Sbjct: 661 NIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKRIYAFLE 720

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L+ +++ AG+ P+T L+L D +++ + + +  HSEKLA+A+ L+    G T I + KN+
Sbjct: 721 ELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTT-IHVRKNL 778

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S + GR II+RD  RFHHF  G CSC D W
Sbjct: 779 RVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 157/509 (30%), Positives = 236/509 (46%), Gaps = 91/509 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVS--YNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+S  ++ GS+ +   +F+  PI D +   Y+T + G+A       AL    RM+ D  +
Sbjct: 87  LVSLFSKYGSINEAARVFE--PIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  Y     L  C    DL+RGK+IHG+++  +   NVF    + +MYAK  +ID A  +
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FDRM  R+LVSWN +I+G+ +NG  KK ++L   MQ  G  PD +T+  +L A       
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G ++ A  +F  + +K  V W +M+ GY
Sbjct: 265 MVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGY 324

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG+ E A+ +F +ML E + P   +I   + +CA L  L  G+ VH     L +  D+
Sbjct: 325 VQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDI 384

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V ++LI MY KC   D A  +FN +  R  VSWN+MI GYAQNG+  EAL  + ++   
Sbjct: 385 SVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSL 444

Query: 419 NLKPDSFTFVSVLSA--------------------CLHADLF---------------ERG 443
            +KPDSFT VSV+ A                    CL  ++F                  
Sbjct: 445 GMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMA 504

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLS 500
           +  FD IS  H IT     +  MI+  G       A+DL   +     +PN + + +++S
Sbjct: 505 RKLFDMISDRHVIT-----WNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVIS 559

Query: 501 VCAMKGDIKHGEMAARHL------FELEP 523
            C+  G +  G    RH       + LEP
Sbjct: 560 ACSHSGLVDEG---LRHFKSMKQDYGLEP 585



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 162/333 (48%), Gaps = 41/333 (12%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  + +  + ++    + G I++A R+F  I +K +  + TM+ GY +N   E AL   
Sbjct: 76  GLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFL 135

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M  +DV+P  ++ + ++  C   A L  G+ +HG+ +      ++   + +++MY KC
Sbjct: 136 CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKC 195

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
              DDA+ +F+ MP R++VSWN++I G++QNG   +AL L  ++  E  +PDS T V+VL
Sbjct: 196 RQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVL 255

Query: 432 SACLHADLFERGQN-HFDSISA-----VHGITPSLDHYA--------------------- 464
            A     L   G++ H  +I A     V+  T   D Y+                     
Sbjct: 256 PAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVV 315

Query: 465 ---CMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
               M++   ++ + +KA+ + + +  +   P  +     L  CA  GD++ G+    H 
Sbjct: 316 SWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFV--HK 373

Query: 519 FELEPINAGPYIMLSN----MYAACGRWEDVAS 547
           F ++ +N G  I + N    MY+ C R  D+AS
Sbjct: 374 F-VDQLNLGSDISVMNSLISMYSKCKRV-DIAS 404


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/660 (39%), Positives = 380/660 (57%), Gaps = 28/660 (4%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           + +N LLH  A S  L  AR LFD+MP+RD +++N ++S+HA  G V   R  FD  P +
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 120 DSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFE----PTDYTHVSALNACAQLLD--- 171
           D+VS+N  +A +   G   EA  +F SR + D        + Y     ++   +L D   
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 172 --------------LRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDR 216
                          RRG  +  + +       +VF   A+   YA+ G +++AR +FD 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  RN VSWN M++ Y++     +  +LF  M    +     + + +L    Q G +++A
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEA 336

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +F  + +KD V W  M+  Y+Q G  E+ L LF EM       ++ + + V+S+CA +
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           A+L  G  +HG+ +  G      V +AL+ MY KCG  +DA   F  M  R+VVSWN+MI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            GYA++G   EAL ++D +   + KPD  T V VL+AC H+ L E+G ++F S+    G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           T   +HY CMI+LLGR+  + +A DL+K +P +P+S +W  LL    +  + + G  AA 
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            +FELEP NAG Y++LSN+YA+ G+W D   +R  M+ + VKK   +SWIE+ NKVH F 
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + D  HPE E IY  L  L  ++++AG+   T +VLHD +EEEK   + YHSEKLA+AY 
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYG 696

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           ++  P G  PIR++KN+RVCGDCH   K+ S I GR I+LRDSNRFHHF GG+CSC D W
Sbjct: 697 ILNIPPG-RPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 26/346 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++I  N  ++AH R+G V D   LF  MP R + +YN  +AG++  G    A  +F  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P +Y++ + L+A A    L   + +  ++ V     +    N +   +A  G + 
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVS 148

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR  FD    ++ VSWN M++ Y++NG+ ++   LF          D ++ + ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT----EWDAISWNALMSGYV 204

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           Q G++ +A  LF  +  +D V W  M+ GY + G   +A  LF+     DV    F+ ++
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTA 260

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPTR 387
           VVS  A+     +G +   + V   + +   VS +A++  Y +  + D+A  +FNMMP R
Sbjct: 261 VVSGYAQ-----NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR 315

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           NV SWN+M+ GYAQ G   EA A++D + Q+    D+ ++ ++L+A
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAA 357



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 205/472 (43%), Gaps = 78/472 (16%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+ +  + ++G++  A  LF  MP R   ++NA+L+ ++ +G +    +LF  +P  D+ 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-------- 174
           SYNT +   A      +A  +F  M     +   Y  + + +A   L+ L R        
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVSLARHYFDLAPE 159

Query: 175 --GKQIHGKIVVGNLGGNV---------------FVRNALTDMYAKGGEIDKARWLFDRM 217
                 +G +      G V                  NAL   Y + G++ +AR LFDRM
Sbjct: 160 KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRM 219

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP--DEVTVSNILGACFQTGRIDD 275
             R++VSWN+M+SGY + G      D+ +  +L    P  D  T + ++    Q G +++
Sbjct: 220 PGRDVVSWNIMVSGYARRG------DMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F  + E++ V W  M+  Y Q    ++A  LFN M                  C  
Sbjct: 274 ARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM-----------------PCRN 316

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +AS                       + ++  Y + G+ ++A  VF+ MP ++ VSW +M
Sbjct: 317 VASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 354

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVH 454
           +  Y+Q G   E L L+ ++ +     +   F  VLS C      E G Q H   I A +
Sbjct: 355 LAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           G+   + +   ++ +  +  +++ A +  + +  + + + W+T+++  A  G
Sbjct: 415 GVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 158/341 (46%), Gaps = 30/341 (8%)

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G L   V   N     + + G +  A  LF  M  R+  ++N M++GY  NG+      L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F+ +      PD  + + +L A   +  + DA  LF  +  +D+V +  MI  +  +G  
Sbjct: 92  FRAIP----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLV 147

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDD-DLLVSS 362
             A   F      D+ P+K      VS    LA+ + +G+V   + +     + D +  +
Sbjct: 148 SLARHYF------DLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWN 197

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+  Y + G   +A  +F+ MP R+VVSWN M++GYA+ G  +EA  L+D         
Sbjct: 198 ALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---- 253

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D FT+ +V+S      + E  +  FD++   + ++     +  M+    +   +D+A +L
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKEL 308

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
              +P + N   W+T+L+  A  G ++     A+ +F+  P
Sbjct: 309 FNMMPCR-NVASWNTMLTGYAQAGMLEE----AKAVFDTMP 344


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 374/638 (58%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
             L+  +A+   V +   LF  +    ++ V +   + G+A  G   +A++ F  M    
Sbjct: 201 TGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQG 260

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            E   YT  + L AC+ +L    G+Q+HG IV    G NV+V++AL DMYAK G++  A+
Sbjct: 261 VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAK 320

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--- 268
            + + M + ++VSWN ++ G++++G  ++ + LF+ M    +  D+ T  ++L  C    
Sbjct: 321 NMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGS 380

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         +TG +D A  +F  + EKD + WT+++ GY
Sbjct: 381 INPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGY 440

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E++L +F +M    V PD+F ++S++S+CA+L  L  G+ VH   +  G+    
Sbjct: 441 AQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQ 500

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V ++L+ MY KCG  DDA  +F  M  ++V++W ++I GYAQNG+   +L  YD ++  
Sbjct: 501 SVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSS 560

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +PD  TF+ +L AC HA L + G+ +F  ++ V+GI P  +HYACMI+L GRS  +D+
Sbjct: 561 GTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDE 620

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A  L+  +  KP++ +W +LLS C +  +++  E AA +LFELEP+NA PY+MLSNMY+A
Sbjct: 621 AKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELEPMNAMPYVMLSNMYSA 680

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +W DVA IR  MKSK + K    SW+EI+++V+ F+S+DR HP    IY ++ ++I +
Sbjct: 681 SRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILR 740

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++EAG+ P+    LHD  +E K   + YHSEKLA+A+ L+  P    PIRI KN+RVCGD
Sbjct: 741 IKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPPS-APIRIFKNLRVCGD 799

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  MK+ S +  R IILRDSN FHHF  G CSC D W
Sbjct: 800 CHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 148/487 (30%), Positives = 251/487 (51%), Gaps = 43/487 (8%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           + +  N+LL+  +KSG++  AR LFDKMP +D  SWN ++S++   G + + R LFD   
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            + S+++++ I+G+   G   EA  +F  M+ + ++ + +T  S L  C+ L  ++ G+ 
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKN 235
           IHG +V     GNVFV   L DMYAK   + +A +LF     + +N V W  M++GY +N
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
           G   K ++ F+ M   G+  ++ T   IL AC                            
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G + +A  +   +++ D V W +++VG+ ++G EE+AL LF  M   +++
Sbjct: 304 SALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMK 363

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            D ++  SV++ C  +    + + VHG  +  G ++  LVS+AL+DMY K G  D A+TV
Sbjct: 364 IDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTV 421

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  M  ++V+SW S++ GYAQN    E+L ++  +    + PD F   S+LSAC    L 
Sbjct: 422 FEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLL 481

Query: 441 ERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           E G Q H D I +  G+  S   Y  ++ +  +   +D A  +  S+  K + + W+ ++
Sbjct: 482 EFGKQVHLDFIKS--GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAII 538

Query: 500 SVCAMKG 506
              A  G
Sbjct: 539 VGYAQNG 545



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 164/336 (48%), Gaps = 49/336 (14%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +++  N L +  +K G+++ AR LFD+M  ++  SWN MIS Y+                
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYV---------------- 107

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                                GR+ +A  LF     K ++ W+++I GY + G + +A  
Sbjct: 108 -------------------NVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFD 148

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF  M  E  +  +F++ SV+  C+ L  +  G+++HG  V  G + ++ V + L+DMY 
Sbjct: 149 LFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYA 208

Query: 370 KCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           KC    +A  +F  +    +N V W +M+ GYAQNG   +A+  +  +  + ++ + +TF
Sbjct: 209 KCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTF 268

Query: 428 VSVLSAC--LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
            ++L+AC  + A  F    + F   S   G   ++   + ++++  +  D+  A +++++
Sbjct: 269 PTILTACSSVLARCFGEQVHGFIVKS---GFGSNVYVQSALVDMYAKCGDLKNAKNMLET 325

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE 520
           +    + + W++L     M G ++HG E  A  LF+
Sbjct: 326 M-EDDDVVSWNSL-----MVGFVRHGLEEEALRLFK 355



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 33/184 (17%)

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN------------------ 397
           + +  ++ L++   K G  +DA  +F+ MP ++  SWN+MI+                  
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 398 -------------GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
                        GY + G  +EA  L+  +  E  K   FT  SVL  C    L + G+
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCA 503
                    +G   ++     ++++  +   V +A  L K L   + N ++W+ +++  A
Sbjct: 183 -MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYA 241

Query: 504 MKGD 507
             GD
Sbjct: 242 QNGD 245


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 378/624 (60%), Gaps = 40/624 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FDKMP R+ V++   I  FA  G +R+A+ +F  M+   + P  +T+ S L+AC +L  
Sbjct: 12  VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 71

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLM 228
           L  GKQ+H +++   L  +V V  +L DMYAK    G +D +R +F++M   N++SW  +
Sbjct: 72  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 131

Query: 229 ISGYLKNGQ-PKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           I+ Y ++G+  K+ I+LF +M    + P+  + S++L AC                    
Sbjct: 132 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 191

Query: 268 ---------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           ++GR++DA + F ++ EK+ V +  ++ GY +N K E+A +LFN
Sbjct: 192 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 251

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+    +    F+ +S++S  A + ++  G+ +HG+ +  G   +  + +ALI MY +CG
Sbjct: 252 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 311

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A+ VFN M  RNV+SW SMI G+A++G    AL ++ K+L+   KP+  T+V+VLS
Sbjct: 312 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 371

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H  +   GQ HF+S+   HGI P ++HYACM++LLGRS  + +A++ I S+P   ++
Sbjct: 372 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 431

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+W TLL  C + G+ + G  AA  + E EP +   YI+LSN++A+ G+W+DV  IR SM
Sbjct: 432 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 491

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K +N+ K A  SWIE++N+VH+F   + +HP+   IY+EL +L  K++E G+ P+T  VL
Sbjct: 492 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVL 551

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EE+K + +  HSEK+A+A+ LI       PIRI KN+RVCGDCH  +K+ S   GR
Sbjct: 552 HDIEEEQKEQFLFQHSEKIAVAFGLISTSQS-KPIRIFKNLRVCGDCHTAIKYISMATGR 610

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RDSNRFHH   G CSC D W
Sbjct: 611 EIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 209/471 (44%), Gaps = 77/471 (16%)

Query: 8   RQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R AID        G       Y+ ++  CT +  + L K+L S + +         +   
Sbjct: 38  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV-IRLGLALDVCVGCS 96

Query: 65  LLHFYAK---SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           L+  YAK    G +  +R +F++MP  +++SW A+++A+A+SG                 
Sbjct: 97  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECD-------------- 142

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                           +EA+++F +M      P  ++  S L AC  L D   G+Q++  
Sbjct: 143 ----------------KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 186

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
            V   +     V N+L  MYA+ G ++ AR  FD +  +NLVS+N ++ GY KN + ++ 
Sbjct: 187 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 246

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGA--------------------------CF------- 268
             LF E+   G+     T +++L                            C        
Sbjct: 247 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 306

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G I+ A ++F+ +++++ + WT+MI G+ ++G    AL +F++ML    +P++ + 
Sbjct: 307 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 366

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
            +V+S+C+ +  +  GQ  H  ++    G+   +   + ++D+  + G+  +A    N M
Sbjct: 367 VAVLSACSHVGMISEGQ-KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 385 P-TRNVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSA 433
           P   + + W +++     +G  +L   A    L QE   P ++  +S L A
Sbjct: 426 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 476


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 259/660 (39%), Positives = 380/660 (57%), Gaps = 28/660 (4%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           + +N LLH  A S  L  AR LFD+MP+RD +++N ++S+HA  G V   R  FD  P +
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 120 DSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFE----PTDYTHVSALNACAQLLD--- 171
           D+VS+N  +A +   G   EA  +F SR + D        + Y     ++   +L D   
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 172 --------------LRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDR 216
                          RRG  +  + +       +VF   A+   YA+ G +++AR +FD 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  RN VSWN M++ Y++     +  +LF  M    +     + + +L    Q G +++A
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEA 336

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +F  + +KD V W  M+  Y+Q G  E+ L LF EM       ++ + + V+S+CA +
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           A+L  G  +HG+ +  G      V +AL+ MY KCG  +DA   F  M  R+VVSWN+MI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            GYA++G   EAL ++D +   + KPD  T V VL+AC H+ L E+G ++F S+    G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           T   +HY CMI+LLGR+  + +A DL+K +P +P+S +W  LL    +  + + G  AA 
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            +FELEP NAG Y++LSN+YA+ G+W D   +R  M+ + VKK   +SWIE+ NKVH F 
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + D  HPE E IY  L  L  ++++AG+   T +VLHD +EEEK   + YHSEKLA+AY 
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYG 696

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           ++  P G  PIR++KN+RVCGDCH   K+ S I GR I+LRDSNRFHHF GG+CSC D W
Sbjct: 697 ILNIPPG-RPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 26/346 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++I  N  ++AH R+G V D   LF  MP R + +YN  +AG++  G    A  +F  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P +Y++ + L+A A    L   + +  ++ V     +    N +   +A  G + 
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVS 148

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR  FD    ++ VSWN M++ Y++NG+ ++   LF          D ++ + ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT----EWDVISWNALMSGYV 204

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           Q G++ +A  LF  +  +D V W  M+ GY + G   +A  LF+     DV    F+ ++
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTA 260

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPTR 387
           VVS  A+     +G +   + V   + +   VS +A++  Y +  + D+A  +FNMMP R
Sbjct: 261 VVSGYAQ-----NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR 315

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           NV SWN+M+ GYAQ G   EA A++D + Q+    D+ ++ ++L+A
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAA 357



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/472 (23%), Positives = 206/472 (43%), Gaps = 78/472 (16%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+ +  + ++G++  A  LF  MP R   ++NA+L+ ++ +G +    +LF  +P  D+ 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-------- 174
           SYNT +   A      +A  +F  M     +   Y  + + +A   L+ L R        
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVSLARHYFDLAPE 159

Query: 175 --GKQIHGKIVVGNLGG---------------NVFVRNALTDMYAKGGEIDKARWLFDRM 217
                 +G +      G               +V   NAL   Y + G++ +AR LFDRM
Sbjct: 160 KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM 219

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP--DEVTVSNILGACFQTGRIDD 275
             R++VSWN+M+SGY + G      D+ +  +L    P  D  T + ++    Q G +++
Sbjct: 220 PGRDVVSWNIMVSGYARRG------DMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F  + E++ V W  M+  Y Q    ++A  LFN M                  C  
Sbjct: 274 ARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM-----------------PCRN 316

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +AS                       + ++  Y + G+ ++A  VF+ MP ++ VSW +M
Sbjct: 317 VASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 354

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVH 454
           +  Y+Q G   E L L+ ++ +     +   F  VLS C      E G Q H   I A +
Sbjct: 355 LAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           G+   + +   ++ +  +  +++ A +  + +  + + + W+T+++  A  G
Sbjct: 415 GVGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARHG 463



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 30/341 (8%)

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G L   V   N     + + G +  A  LF  M  R+  ++N M++GY  NG+      L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F+ +      PD  + + +L A   +  + DA  LF  +  +D+V +  MI  +  +G  
Sbjct: 92  FRAIP----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLV 147

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDD-DLLVSS 362
             A   F      D+ P+K      VS    LA+ + +G+V   + +     + D++  +
Sbjct: 148 SLARHYF------DLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWN 197

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+  Y + G   +A  +F+ MP R+VVSWN M++GYA+ G  +EA  L+D         
Sbjct: 198 ALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---- 253

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D FT+ +V+S      + E  +  FD++   + ++     +  M+    +   +D+A +L
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKEL 308

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
              +P + N   W+T+L+  A  G ++     A+ +F+  P
Sbjct: 309 FNMMPCR-NVASWNTMLTGYAQAGMLEE----AKAVFDTMP 344


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 258/642 (40%), Positives = 379/642 (59%), Gaps = 41/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            NAL++ + +  ++ +  ++F  MP +D+VS+N+ I+G  +     EA+  F  M+++   
Sbjct: 495  NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMV 554

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P++++ +S L++C+ L  L  G+QIHG+     L  +V V NAL  +YA+   I++ + +
Sbjct: 555  PSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKV 614

Query: 214  FDRMNNRNLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
            F +M   + VSWN  I    K      + +  F EM   G  P+ VT  NIL A      
Sbjct: 615  FFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSV 674

Query: 269  -------------------------------QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
                                           +  +++D   +F  + E+ D V W +MI 
Sbjct: 675  LGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMIS 734

Query: 297  GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            GY  +G    A+ L   M+    + D F+ ++V+S+CA +A+L  G  VH  AV   ++ 
Sbjct: 735  GYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRACLES 794

Query: 357  DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            D++V SAL+DMY KCG  D A   F +MP RN+ SWNSMI+GYA++G   +AL ++ ++ 
Sbjct: 795  DVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMK 854

Query: 417  QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
            Q    PD  TFV VLSAC H  L + G  HF S+  V+G++P ++H++CM++LLGR+ DV
Sbjct: 855  QHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDV 914

Query: 477  DKAVDLIKSLPHKPNSLIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
             K  D IK++P  PN LIW T+L  C  A   + + G+ AA+ L ELEP NA  Y++LSN
Sbjct: 915  KKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSN 974

Query: 535  MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            M+AA G WEDV   R +M+   VKK A  SW+ + + VH FV+ D+THPE E IYE+L +
Sbjct: 975  MHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKIYEKLKE 1034

Query: 595  LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            L+ K+++AG+ P TK  L+D + E K + + YHSEKLA+A+ L +K     PIRIMKN+R
Sbjct: 1035 LMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSE--LPIRIMKNLR 1092

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            VCGDCH   K+ S I+GR IILRDSNRFHHF GG CSC D W
Sbjct: 1093 VCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 230/497 (46%), Gaps = 51/497 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           LRD+   +AL++  AR G +   + +F +M  R++V+ N  + G A +    EA +VF  
Sbjct: 383 LRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKE 442

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDL----RRGKQIHGKIV-VGNLGGNVFVRNALTDMY 201
           M KD  E    + V  L+   +  +L    R+G+++H  +   G +   + + NAL +MY
Sbjct: 443 M-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMY 501

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K   ID A  +F  M +++ VSWN MISG   N + ++ +  F  M+  G+ P   +V 
Sbjct: 502 GKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVI 561

Query: 262 NILGAC-----------------------------------FQTGRIDDAGRLFHVIKEK 286
           + L +C                                    +T  I++  ++F  + E 
Sbjct: 562 STLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEY 621

Query: 287 DNVCWTTMIVGYTQ-NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           D V W + I    +       AL  F EM+    RP++ +  +++++ +  + L  G  +
Sbjct: 622 DQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI 681

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQ 404
           H   +   V DD  + +AL+  Y KC   +D   +F+ M   R+ VSWNSMI+GY  +G 
Sbjct: 682 HALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGI 741

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY 463
             +A+ L   ++Q   K D FTF +VLSAC      ERG   H  ++ A   +   +   
Sbjct: 742 LHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAVRAC--LESDVVVG 799

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + ++++  +   +D A    + +P + N   W++++S  A  G   HG+ A +    ++ 
Sbjct: 800 SALVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHG---HGQKALKIFTRMKQ 855

Query: 524 INAGP-YIMLSNMYAAC 539
               P ++    + +AC
Sbjct: 856 HGQSPDHVTFVGVLSAC 872



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 207/449 (46%), Gaps = 66/449 (14%)

Query: 51  LNFYEPNTTFL------HNRLLHF------YAKSGKLFYAR----DLFDKMPLRDIISWN 94
           LN Y    TFL      H++L         Y  S  L+ A      L+      D+   N
Sbjct: 120 LNKYNSTYTFLRHYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCN 179

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            L++ + R G++   R LFD+MP ++ VS++  I+G+       EA  +F  +      P
Sbjct: 180 TLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLP 239

Query: 155 TDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-GGEIDKAR 211
             +   SAL AC Q     ++ G QIH  I       ++ + N L  MY+   G ID A 
Sbjct: 240 NHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAH 299

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL----LGLNPDEVTVSNIL-GA 266
            +FD +  RN V+WN +IS Y + G       LF  MQ+    L L P+E T+ +++  A
Sbjct: 300 RVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA 359

Query: 267 C------------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           C                                     + G +D A  +F  + +++ V 
Sbjct: 360 CSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVT 419

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH----GQVVH 346
              ++VG  +  + E+A  +F EM  + V  +  S+  ++S+  + ++L      GQ VH
Sbjct: 420 MNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVH 478

Query: 347 GKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
                 G VD  + + +AL++MY KC   D+A +VF +MP+++ VSWNSMI+G   N + 
Sbjct: 479 AYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERF 538

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSAC 434
            EA++ +  + +  + P +F+ +S LS+C
Sbjct: 539 EEAVSCFHTMKRNGMVPSNFSVISTLSSC 567



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 120/463 (25%), Positives = 208/463 (44%), Gaps = 81/463 (17%)

Query: 110 RALFDKMP----------IRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYT 158
           R L D++P          +RD+   NT +AG     F   A  +F R+  K     T   
Sbjct: 77  RLLKDRLPTKINLQRRGSLRDAT--NTCVAGC---DFPEMASHLFMRLLNKYNSTYTFLR 131

Query: 159 HVSALNACAQLLD-----------LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           H +  ++  Q LD           L     +H ++       +VF  N L ++Y + G +
Sbjct: 132 HYTFSHSQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNL 191

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR LFD M  +NLVSW+ +ISGY +N  P +   LF+ +   GL P+   V + L AC
Sbjct: 192 VSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRAC 251

Query: 268 FQ--------------------------------------TGRIDDAGRLFHVIKEKDNV 289
            Q                                      +G IDDA R+F  IK +++V
Sbjct: 252 QQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSV 311

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDV----RPDKFSISSVVSSCAKLASLYHGQVV 345
            W ++I  Y + G    A  LF+ M  E V    RP+++++ S+V++   LA    G V+
Sbjct: 312 TWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADC--GLVL 369

Query: 346 HGKAVVL----GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
             + +      G   DL V SAL++ + + G+ D A  +F  M  RN V+ N ++ G A+
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLAR 429

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
             Q  EA  ++ K +++ ++ +S + V +LS        + G+     + A    +  +D
Sbjct: 430 QHQGEEAAKVF-KEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVD 488

Query: 462 HYA----CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                   ++N+ G+ + +D A  + + +P K +++ W++++S
Sbjct: 489 ARISIGNALVNMYGKCTAIDNACSVFQLMPSK-DTVSWNSMIS 530



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 23/213 (10%)

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           +SLY    +H +    G  DD+   + LI++Y + G    A  +F+ MP +N+VSW+ +I
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           +GY QN    EA +L+  ++   L P+ F   S L AC        G         +H  
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQC-----GSTGIKLGMQIHAF 268

Query: 457 TPSLDHYACMI--NLL--------GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              L   + MI  N+L        G   D  +  D IK      NS+ W++++SV   +G
Sbjct: 269 ICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKF----RNSVTWNSIISVYCRRG 324

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           D     ++A  LF +  +      +  N Y  C
Sbjct: 325 D----AVSAFKLFSVMQMEGVELNLRPNEYTLC 353


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 267/692 (38%), Positives = 398/692 (57%), Gaps = 45/692 (6%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           R+ D+  A+++  +  L    P  T    N ++  Y +S K   A  LFD+MP R+ +S+
Sbjct: 31  RIGDIHNARKVFDNTPL----PQRTIASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSF 86

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N ++S + ++G V D R +FD MP R+ VS+ + + G+  +G   EA ++F  M   R  
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMP--RRN 144

Query: 154 PTDYTHV-------SALNACAQLLDLRRGKQIHGKIVVGNLGG----------------- 189
              +T +       S ++   +L D+   K +   +VV N+ G                 
Sbjct: 145 VVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV---VVVTNMIGGYCQVGRLDEARELFDE 201

Query: 190 ----NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               NVF    +   YAK G +D AR LF+ M  RN VSW  M+ GY ++G+ K+  +LF
Sbjct: 202 MKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELF 261

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
           + M +  +    V  + ++      G +  A  +F  +KE+D   W  MI  + + G + 
Sbjct: 262 EAMPVKWI----VACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDL 317

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL LF  M  E V  +  S+ SV+S CA LASL HG+ VH + V    D DL V+S LI
Sbjct: 318 EALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLI 377

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            MY KCG    A  +FN    ++VV WNSMI GY+Q+G   EAL ++  +    ++PD  
Sbjct: 378 TMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEV 437

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+ VLSAC ++   + G   F+++   + + P ++HYACM++LLGR+  VD+A++L++ 
Sbjct: 438 TFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEK 497

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +P++++W  LL  C     +   E+A   L +LEP NAGPY++LS+MYA  GRW DV
Sbjct: 498 MPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDV 557

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKKLQEAGF 604
             +R  + ++ V KF   SWIE++ KVH F   D ++HPE  +I + L KL   L+EAG+
Sbjct: 558 EVLRKKI-NRRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGY 616

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+   VLHD  EEEK  S+ YHSE+LA+AY L+K P G+ PIR+MKN+RVCGDCH  +K
Sbjct: 617 CPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGM-PIRVMKNLRVCGDCHSAIK 675

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             + + GR IILRD+NRFHHF  G+CSCKD W
Sbjct: 676 LIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 367/632 (58%), Gaps = 37/632 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+   A+ G++  AR LF+++P   ++SWNAL++ + ++G V + + LFDKMP R+++S+
Sbjct: 328 LITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              IAG+A  G S EAL +   + +    P+  +  S   AC+ ++ L  G Q+H   V 
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                N F  NAL  MY K   ++ AR +F RM  +++VSWN                  
Sbjct: 448 VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWN------------------ 489

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                            + L A  Q   +D+A   F  +  +D+V WTT+I  Y    + 
Sbjct: 490 -----------------SFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQS 532

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +A+  F  M  E   P+   ++ ++  C  L +   GQ +H  A+ LG+D +L+V++AL
Sbjct: 533 NEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL 592

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I MY KCG  D    +F++M  R++ +WN++I GYAQ+G   EA+ +Y  +    + P+ 
Sbjct: 593 ISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TFV +L+AC HA L + G   F S+S  +G+TP  +HYACM++LLGR+ DV  A   I 
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+++IWS LL  C +  + + G+ AA  LF +EP NAG Y+MLSN+Y++ G W +
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGE 771

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA +R  MK + V K    SW +I +K+H FV+ D+ H + E I   L +L   L+  G+
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGY 831

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T+ VLHD  EE+K  S+ YHSEKLA+AYCL+  P G+ PI+I+KN+R+CGDCH F+K
Sbjct: 832 VPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGM-PIQILKNLRICGDCHTFIK 890

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S +  R I +RD NRFHHF  G+CSC+D W
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 235/532 (44%), Gaps = 72/532 (13%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L + L++    +      T   N ++  Y ++G +  AR LFD MP RD+ SWN++L+ +
Sbjct: 109 LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGY 168

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
             S  + D R LF+KMP R+ VS+   I+G+       +A  +F +M ++   P      
Sbjct: 169 CHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFA 228

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI-DKARWLFDRMNN 219
           SAL+A   L +L   + +    +      +V +  A+ ++Y++   + D A   F+ M  
Sbjct: 229 SALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIE 288

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQE----------MQLLGLN--------------- 254
           RN  +W+ MI+     G+    I +++             + GL                
Sbjct: 289 RNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQI 348

Query: 255 PDEVTVS--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           P+ + VS   ++    Q G +++A  LF  +  ++ + W  MI GY QNG+ E+AL L  
Sbjct: 349 PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQ 408

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+    + P   S++S+  +C+ + +L  G  VH  AV +G   +    +ALI MY KC 
Sbjct: 409 ELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCR 468

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A  VF+ M T+++VSWNS +    QN    EA   +D +L      D  ++ +++S
Sbjct: 469 NMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIIS 524

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           A  HA+        F ++   H +                                 PNS
Sbjct: 525 AYAHAEQSNEAMGAFKTMFCEHEL---------------------------------PNS 551

Query: 493 LIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACG 540
            I + LL VC   G  K G+    +A +   + E I A   I   +MY  CG
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALI---SMYFKCG 600



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 218/472 (46%), Gaps = 64/472 (13%)

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            + G++  AR++FD MP RDII+WN+++SA+  +G     R L+D +   +  +    ++
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+   G   EA +VF  M     E       + ++   Q  D+   +++   +       
Sbjct: 105 GYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMP----SR 156

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V   N++   Y    ++  AR LF++M  RNLVSW +MISGY +     K  D+F +M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 250 LLGLNPDEVTVSNILGA----------------CFQTG--------------------RI 273
             GL PD+   ++ L A                  +TG                     +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A + F  + E++   W+TMI   +  G+ + A+ ++          ++  + S+    
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----------ERDPVKSIACRT 326

Query: 334 AKLASLYH-GQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           A +  L   G++   + +   + + ++VS +ALI  Y + G+ ++A  +F+ MP RN +S
Sbjct: 327 ALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS 386

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSI 450
           W  MI GYAQNG+  EAL L  +L +  + P   +  S+  AC +    E G Q H  ++
Sbjct: 387 WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV 446

Query: 451 SAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                +    + +AC  +I + G+  +++ A  +   +  K + + W++ L+
Sbjct: 447 K----VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLA 493



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 10/328 (3%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +  L+  G   +  + T +   C+ +  +E   ++ S + +       +F  N L+  Y 
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS-LAVKVGCQFNSFACNALITMYG 465

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K   + YAR +F +M  +DI+SWN+ L+A  ++  + + R  FD M  RD VS+ T I+ 
Sbjct: 466 KCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISA 525

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A+   S EA+  F  M  +   P        L  C  L   + G+QIH   +   +   
Sbjct: 526 YAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSE 585

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V NAL  MY K G  D  R +FD M  R++ +WN +I+GY ++G  ++ I ++Q M+ 
Sbjct: 586 LIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMES 644

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEE 305
            G+ P+EVT   +L AC   G +D+  + F  + +   +      +  M+    + G  +
Sbjct: 645 AGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQ 704

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSC 333
            A     +M    + PD    S+++ +C
Sbjct: 705 GAEQFIYDM---PIEPDTVIWSALLGAC 729



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           SA I    + G   +A  VF+ MP R++++WNSMI+ Y  NG    A  LYD +   N++
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
             +     +LS           +  FD +   + +      +  MI+   ++ D+  A  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARR 148

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA-ARHLFELEP 523
           L  ++P +  S  W+++L+     G     +M  AR+LFE  P
Sbjct: 149 LFDAMPSRDVS-SWNSMLT-----GYCHSLQMVDARNLFEKMP 185


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 242/632 (38%), Positives = 367/632 (58%), Gaps = 37/632 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+   A+ G++  AR LF+++P   ++SWNAL++ + ++G V + + LFDKMP R+++S+
Sbjct: 328 LITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISW 387

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              IAG+A  G S EAL +   + +    P+  +  S   AC+ ++ L  G Q+H   V 
Sbjct: 388 AGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK 447

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                N F  NAL  MY K   ++ AR +F RM  +++VSWN                  
Sbjct: 448 VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWN------------------ 489

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                            + L A  Q   +D+A   F  +  +D+V WTT+I  Y    + 
Sbjct: 490 -----------------SFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQS 532

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +A+  F  M  E   P+   ++ ++  C  L +   GQ +H  A+ LG+D +L+V++AL
Sbjct: 533 NEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANAL 592

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I MY KCG  D    +F++M  R++ +WN++I GYAQ+G   EA+ +Y  +    + P+ 
Sbjct: 593 ISMYFKCGCADSR-RIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNE 651

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TFV +L+AC HA L + G   F S+S  +G+TP  +HYACM++LLGR+ DV  A   I 
Sbjct: 652 VTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIY 711

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+++IWS LL  C +  + + G+ AA  LF +EP NAG Y+MLSN+Y++ G W +
Sbjct: 712 DMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGE 771

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA +R  MK + V K    SW +I +K+H FV+ D+ H + E I   L +L   L+  G+
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGY 831

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T+ VLHD  EE+K  S+ YHSEKLA+AYCL+  P G+ PI+I+KN+R+CGDCH F+K
Sbjct: 832 VPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGM-PIQILKNLRICGDCHTFIK 890

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S +  R I +RD NRFHHF  G+CSC+D W
Sbjct: 891 FVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 140/532 (26%), Positives = 235/532 (44%), Gaps = 72/532 (13%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L + L++    +      T   N ++  Y ++G +  AR LFD MP RD+ SWN++L+ +
Sbjct: 109 LGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGY 168

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
             S  + D R LF+KMP R+ VS+   I+G+       +A  +F +M ++   P      
Sbjct: 169 CHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFA 228

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI-DKARWLFDRMNN 219
           SAL+A   L +L   + +    +      +V +  A+ ++Y++   + D A   F+ M  
Sbjct: 229 SALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIE 288

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQE----------MQLLGLN--------------- 254
           RN  +W+ MI+     G+    I +++             + GL                
Sbjct: 289 RNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQI 348

Query: 255 PDEVTVS--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           P+ + VS   ++    Q G +++A  LF  +  ++ + W  MI GY QNG+ E+AL L  
Sbjct: 349 PEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQ 408

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+    + P   S++S+  +C+ + +L  G  VH  AV +G   +    +ALI MY KC 
Sbjct: 409 ELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCR 468

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A  VF+ M T+++VSWNS +    QN    EA   +D +L      D  ++ +++S
Sbjct: 469 NMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIIS 524

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           A  HA+        F ++   H +                                 PNS
Sbjct: 525 AYAHAEQSNEAMGAFKTMFCEHEL---------------------------------PNS 551

Query: 493 LIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACG 540
            I + LL VC   G  K G+    +A +   + E I A   I   +MY  CG
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALI---SMYFKCG 600



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 218/472 (46%), Gaps = 64/472 (13%)

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            + G++  AR++FD MP RDII+WN+++SA+  +G     R L+D +   +  +    ++
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+   G   EA +VF  M     E       + ++   Q  D+   +++   +       
Sbjct: 105 GYGRLGRVLEARRVFDGM----LERNTVAWNAMISCYVQNGDITMARRLFDAMP----SR 156

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V   N++   Y    ++  AR LF++M  RNLVSW +MISGY +     K  D+F +M 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMH 216

Query: 250 LLGLNPDEVTVSNILGA----------------CFQTG--------------------RI 273
             GL PD+   ++ L A                  +TG                     +
Sbjct: 217 REGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVL 276

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A + F  + E++   W+TMI   +  G+ + A+ ++          ++  + S+    
Sbjct: 277 DTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVY----------ERDPVKSIACRT 326

Query: 334 AKLASLYH-GQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           A +  L   G++   + +   + + ++VS +ALI  Y + G+ ++A  +F+ MP RN +S
Sbjct: 327 ALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS 386

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSI 450
           W  MI GYAQNG+  EAL L  +L +  + P   +  S+  AC +    E G Q H  ++
Sbjct: 387 WAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAV 446

Query: 451 SAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                +    + +AC  +I + G+  +++ A  +   +  K + + W++ L+
Sbjct: 447 K----VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK-DIVSWNSFLA 493



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 157/328 (47%), Gaps = 10/328 (3%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +  L+  G   +  + T +   C+ +  +E   ++ S + +       +F  N L+  Y 
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHS-LAVKVGCQFNSFACNALITMYG 465

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K   + YAR +F +M  +DI+SWN+ L+A  ++  + + R  FD M  RD VS+ T I+ 
Sbjct: 466 KCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISA 525

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A+   S EA+  F  M  +   P        L  C  L   + G+QIH   +   +   
Sbjct: 526 YAHAEQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSE 585

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V NAL  MY K G  D  R +FD M  R++ +WN +I+GY ++G  ++ I ++Q M+ 
Sbjct: 586 LIVANALISMYFKCGCADSRR-IFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMES 644

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEE 305
            G+ P+EVT   +L AC   G +D+  + F  + +   +      +  M+    + G  +
Sbjct: 645 AGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQ 704

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSC 333
            A     +M    + PD    S+++ +C
Sbjct: 705 GAEQFIYDM---PIEPDTVIWSALLGAC 729



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 16/163 (9%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           SA I    + G   +A  VF+ MP R++++WNSMI+ Y  NG    A  LYD +   N++
Sbjct: 38  SARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR 97

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
             +     +LS           +  FD +   + +      +  MI+   ++ D+  A  
Sbjct: 98  TGAI----LLSGYGRLGRVLEARRVFDGMLERNTVA-----WNAMISCYVQNGDITMARR 148

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA-ARHLFELEP 523
           L  ++P +  S  W+++L+     G     +M  AR+LFE  P
Sbjct: 149 LFDAMPSRDVS-SWNSMLT-----GYCHSLQMVDARNLFEKMP 185


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 241/624 (38%), Positives = 378/624 (60%), Gaps = 40/624 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FDKMP R+ V++   I  FA  G +R+A+ +F  M+   + P  +T+ S L+AC +L  
Sbjct: 7   VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 66

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLM 228
           L  GKQ+H +++   L  +V V  +L DMYAK    G +D +R +F++M   N++SW  +
Sbjct: 67  LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 126

Query: 229 ISGYLKNGQ-PKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           I+ Y ++G+  K+ I+LF +M    + P+  + S++L AC                    
Sbjct: 127 ITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLG 186

Query: 268 ---------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           ++GR++DA + F ++ EK+ V +  ++ GY +N K E+A +LFN
Sbjct: 187 IASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFN 246

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+    +    F+ +S++S  A + ++  G+ +HG+ +  G   +  + +ALI MY +CG
Sbjct: 247 EIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCG 306

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A+ VFN M  RNV+SW SMI G+A++G    AL ++ K+L+   KP+  T+V+VLS
Sbjct: 307 NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLS 366

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H  +   GQ HF+S+   HGI P ++HYACM++LLGRS  + +A++ I S+P   ++
Sbjct: 367 ACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 426

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+W TLL  C + G+ + G  AA  + E EP +   YI+LSN++A+ G+W+DV  IR SM
Sbjct: 427 LVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSM 486

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K +N+ K A  SWIE++N+VH+F   + +HP+   IY+EL +L  K++E G+ P+T  VL
Sbjct: 487 KERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVL 546

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EE+K + +  HSEK+A+A+ LI       PIRI KN+RVCGDCH  +K+ S   GR
Sbjct: 547 HDIEEEQKEQFLFQHSEKIAVAFGLISTSQS-KPIRIFKNLRVCGDCHTAIKYISMATGR 605

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RDSNRFHH   G CSC D W
Sbjct: 606 EIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 209/471 (44%), Gaps = 77/471 (16%)

Query: 8   RQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R AID        G       Y+ ++  CT +  + L K+L S + +         +   
Sbjct: 33  RDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRV-IRLGLALDVCVGCS 91

Query: 65  LLHFYAK---SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           L+  YAK    G +  +R +F++MP  +++SW A+++A+A+SG                 
Sbjct: 92  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECD-------------- 137

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                           +EA+++F +M      P  ++  S L AC  L D   G+Q++  
Sbjct: 138 ----------------KEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 181

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
            V   +     V N+L  MYA+ G ++ AR  FD +  +NLVS+N ++ GY KN + ++ 
Sbjct: 182 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 241

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGA--------------------------CF------- 268
             LF E+   G+     T +++L                            C        
Sbjct: 242 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 301

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G I+ A ++F+ +++++ + WT+MI G+ ++G    AL +F++ML    +P++ + 
Sbjct: 302 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 361

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
            +V+S+C+ +  +  GQ  H  ++    G+   +   + ++D+  + G+  +A    N M
Sbjct: 362 VAVLSACSHVGMISEGQ-KHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 385 P-TRNVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSA 433
           P   + + W +++     +G  +L   A    L QE   P ++  +S L A
Sbjct: 421 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHA 471


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 249/644 (38%), Positives = 369/644 (57%), Gaps = 35/644 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NAL+  +A+ GS+ D R +FD M  RD +S+N  I G A  G   EA  +F +
Sbjct: 266 ISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLK 325

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ++ F P   T++S LN           K++H   V   L  ++ V +A   MY + G 
Sbjct: 326 MQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGS 385

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ID A+ +FD++  RN+ +WN MI G  +    ++ + LF +M+  G  PD  T  NIL A
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 267 ----------------CFQTGRID------------------DAGRLFHVIKEKDNVCWT 292
                               G +D                   A ++F  + E++   WT
Sbjct: 446 NVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWT 505

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI G  Q+G   +A  LF +ML E + PD  +  S++S+CA   +L   + VH  AV  
Sbjct: 506 VMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNA 565

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  DL V +AL+ MY KCG  DDA  VF+ M  R+V SW  MI G AQ+G+ L+AL L+
Sbjct: 566 GLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLF 625

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            K+  E  KP+ ++FV+VLSAC HA L + G+  F S++  +GI P+++HY CM++LLGR
Sbjct: 626 VKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGR 685

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +++A   I ++P +P    W  LL  C   G+++  E AA+   +L+P +A  Y++L
Sbjct: 686 AGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 745

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YAA G WE    +RS M+ + ++K    SWIE+DN++H FV  D +HPE++ IY +L
Sbjct: 746 SNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESKEIYAKL 805

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             LIK+L+  G+ P+T+LVL +T +E K +++C HSEKLA+ Y L+  P+   PIR+ KN
Sbjct: 806 KDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPY-RNPIRVYKN 864

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH   KF S + GR I+ RD+ RFHHF  G CSC D W
Sbjct: 865 LRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 163/552 (29%), Positives = 255/552 (46%), Gaps = 85/552 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ + + GS+ D + +FDKM  R+ +S+   I G A+ G  +EA   F +MQ
Sbjct: 64  DVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQ 123

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F P  YT+VS LNA A    L   K++H   V   L  ++ V NAL  MYAK G ID
Sbjct: 124 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 183

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD M  R++ SW +MI G  ++G+ ++   LF +M+  G  P+  T  +IL A  
Sbjct: 184 DARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASA 243

Query: 269 QT-------------------------------------GRIDDAGRLFHVIKEKDNVCW 291
            T                                     G IDDA  +F  + ++D + W
Sbjct: 244 ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISW 303

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI G  QNG   +A  +F +M  E   PD  +  S++++     +    + VH  AV 
Sbjct: 304 NAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           +G+  DL V SA + MY +CG  DDA  +F+ +  RNV +WN+MI G AQ     EAL+L
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFE-----------------RGQNHFDSISAVH 454
           + ++ +E   PD+ TFV++LSA +  +  E                 R  N    + A  
Sbjct: 424 FLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKC 483

Query: 455 G------------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLL 499
           G            +  ++  +  MI+ L +     +A  L   +  +   P++  + ++L
Sbjct: 484 GNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSIL 543

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYI------MLSNMYAACGRWEDVASIRSSMK 553
           S CA  G ++  +    H      +NAG          L +MYA CG  +D   +   M 
Sbjct: 544 SACASTGALEWVKEVHSH-----AVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDML 598

Query: 554 SKNVKKFAAYSW 565
            ++V     YSW
Sbjct: 599 ERDV-----YSW 605



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/416 (31%), Positives = 209/416 (50%), Gaps = 41/416 (9%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           I G+A  G++ +A++V+S+M+++  +P + T++S L AC   + L+ GK+IH  I+    
Sbjct: 2   IGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGF 61

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +V V  AL +MY K G ID A+ +FD+M  RN++SW +MI G    G+ ++    F +
Sbjct: 62  QSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQ 121

Query: 248 MQLLGLNPDEVTVSNILGA-----------------------------------CFQTGR 272
           MQ  G  P+  T  +IL A                                     ++G 
Sbjct: 122 MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGS 181

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           IDDA  +F  + E+D   WT MI G  Q+G+ ++A  LF +M      P+  +  S++++
Sbjct: 182 IDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241

Query: 333 CA--KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            A     +L   + VH  A   G   DL V +ALI MY KCG  DDA  VF+ M  R+V+
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDS 449
           SWN+MI G AQNG   EA  ++ K+ QE   PDS T++S+L+  +    +E  +  H  +
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           +    G+   L   +  +++  R   +D A  +   L  + N   W+ ++   A +
Sbjct: 362 VEV--GLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQ 414



 Score =  193 bits (491), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 145/482 (30%), Positives = 221/482 (45%), Gaps = 73/482 (15%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+H YAKSG +  AR +FD M  RDI SW  ++                         
Sbjct: 170 NALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMI------------------------- 204

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA--QLLDLRRGKQIHG 180
                  G A  G  +EA  +F +M++    P   T++S LNA A      L   K++H 
Sbjct: 205 ------GGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHK 258

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                    ++ V NAL  MYAK G ID AR +FD M +R+++SWN MI G  +NG   +
Sbjct: 259 HAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHE 318

Query: 241 CIDLFQEMQLLGLNPDEVTVSNIL------------------------------GACF-- 268
              +F +MQ  G  PD  T  ++L                              G+ F  
Sbjct: 319 AFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVH 378

Query: 269 ---QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              + G IDDA  +F  +  ++   W  MI G  Q     +AL LF +M  E   PD  +
Sbjct: 379 MYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATT 438

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
             +++S+     +L   + VH  A+  G+  DL V +AL+ MY KCG T  A  VF+ M 
Sbjct: 439 FVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMV 497

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            RNV +W  MI+G AQ+G   EA +L+ ++L+E + PD+ T+VS+LSAC      E  + 
Sbjct: 498 ERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKE 557

Query: 446 -HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            H  +++A  G+   L     ++++  +   VD A  +   +  + +   W+ ++   A 
Sbjct: 558 VHSHAVNA--GLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER-DVYSWTVMIGGLAQ 614

Query: 505 KG 506
            G
Sbjct: 615 HG 616



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 166/366 (45%), Gaps = 54/366 (14%)

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           MI GY + G  +  + ++ +M+  G  P+E+T  +IL AC                    
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 268 FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           FQ+               G IDDA  +F  + E++ + WT MI G    G+ ++A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +M  E   P+ ++  S++++ A   +L   + VH  AV  G+  DL V +AL+ MY K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             DDA  VF+ M  R++ SW  MI G AQ+G+  EA +L+ ++ +    P+  T++S+L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 433 ACLHADLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           A   + +   G    + +  VH      G    L     +I++  +   +D A  +   +
Sbjct: 241 A---SAITSTGA--LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGM 295

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP----YIMLSNMYAACGRW 542
             + + + W+ ++   A  G    G  A     +++     P    Y+ L N + + G W
Sbjct: 296 CDR-DVISWNAMIGGLAQNG---CGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAW 351

Query: 543 EDVASI 548
           E V  +
Sbjct: 352 EWVKEV 357


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 361/613 (58%), Gaps = 41/613 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR-----EALQV 143
           D+I  NAL++ + +  SVQ+ R +FD+M  RD +S++  IAG+A  G+       E  Q+
Sbjct: 292 DMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
             RM+++   P   T +S L AC     L +G+QIH ++       +  ++ A+ +MYAK
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAK 411

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I +A  +F +M N+N+V+W   +S Y+K      C DL                   
Sbjct: 412 CGSIYEAEQVFSKMANKNVVAWTSFLSMYIK------CGDL------------------- 446

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A ++F  +  ++ V W  MI GY QNG       L + M +E  +PD+
Sbjct: 447 ----------SSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDR 496

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            ++ +++ +C  LA L  G++VH +AV LG++ D +V+++LI MY KCG   +A TVF+ 
Sbjct: 497 VTVITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDK 556

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  R+ V+WN+M+ GY Q+G  LEA+ L+ ++L+E + P+  T  +V+SAC  A L + G
Sbjct: 557 MSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEG 616

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +  F  +     +TP   HY CM++LLGR+  + +A + I+S+P +P+  +W  LL  C 
Sbjct: 617 REIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACK 676

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
              +++  E AA H+ ELEP  A  YI LSN+YA  GRW+D   +R  M  + +KK    
Sbjct: 677 SHNNVQLAERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGE 736

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           S IEID ++H FV+ED  HPE + I+ EL  L K+++EAG++P+ + VLHD  + +K K+
Sbjct: 737 SSIEIDGRIHTFVAEDCAHPEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKA 796

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           +C+HSEKLA+AY L+K P G TPIRIMKN+RVCGDCH   KF S I  R I+ RD+NRFH
Sbjct: 797 LCHHSEKLAIAYGLLKTPSG-TPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFH 855

Query: 684 HFVGGNCSCKDNW 696
           +F  G CSC D W
Sbjct: 856 YFNNGTCSCGDFW 868



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 222/464 (47%), Gaps = 45/464 (9%)

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G  REA+Q+   +++        T+   +  CA+      GK +H ++    +  ++++ 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLG 94

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N+L + Y+K  ++  A  +F RM  R++V+W+ MI+ Y  N  P K  D F+ M    + 
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 255 PDEVTVSNILGAC-----------------------------------FQTGRIDDAGRL 279
           P+ +T  +IL AC                                    + G I  A  +
Sbjct: 155 PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEV 214

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           FH + E++ V WT +I    Q+ K  +A  L+ +ML   + P+  +  S+++SC    +L
Sbjct: 215 FHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEAL 274

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +H      G++ D++V++ALI MYCKC    +A  +F+ M  R+V+SW++MI GY
Sbjct: 275 NRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGY 334

Query: 400 AQNG-QDLEAL----ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           AQ+G +D E++     L +++ +E + P+  TF+S+L AC      E+G+     +S V 
Sbjct: 335 AQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV- 393

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G          + N+  +   + +A  +   + +K N + W++ LS+    GD+   E  
Sbjct: 394 GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK-NVVAWTSFLSMYIKCGDLSSAE-- 450

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
            +   E+   N   + ++   YA  G    V  + SSMK++  +
Sbjct: 451 -KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ 493



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 157/277 (56%), Gaps = 1/277 (0%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           Q ++ +   G    +  +  ++  CT    +E  +++ + +    +E + + L   + + 
Sbjct: 350 QLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRS-LQTAIFNM 408

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           YAK G ++ A  +F KM  +++++W + LS + + G +     +F +MP R+ VS+N  I
Sbjct: 409 YAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI 468

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           AG+A  G   +  ++ S M+ + F+P   T ++ L AC  L  L RGK +H + V   L 
Sbjct: 469 AGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLE 528

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +  V  +L  MY+K G++ +AR +FD+M+NR+ V+WN M++GY ++G   + +DLF+ M
Sbjct: 529 SDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRM 588

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
               ++P+E+T++ ++ AC + G + +   +F +++E
Sbjct: 589 LKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 204/452 (45%), Gaps = 67/452 (14%)

Query: 3   AKH-KLRQAIDTLYSR----GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN 57
           A+H KL +A + LY +    G +     +  L+  C     +   +R+ SH+     E +
Sbjct: 234 AQHRKLNEAFE-LYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETD 292

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG-----SVQDLRAL 112
              + N L+  Y K   +  AR++FD+M  RD+ISW+A+++ +A+SG     S+ ++  L
Sbjct: 293 M-IVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQL 351

Query: 113 FDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
            ++M       + V++ + +      G   +  Q+ + + K  FE       +  N  A+
Sbjct: 352 LERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAK 411

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              +   +Q+  K+       NV    +   MY K G++  A  +F  M  RN+VSWNLM
Sbjct: 412 CGSIYEAEQVFSKMA----NKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLM 467

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------- 267
           I+GY +NG   K  +L   M+  G  PD VTV  IL AC                     
Sbjct: 468 IAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGL 527

Query: 268 --------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G++ +A  +F  +  +D V W  M+ GY Q+G   +A+ LF  
Sbjct: 528 ESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKR 587

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDM 367
           ML E V P++ ++++V+S+C++      G V  G+ +   + +D  ++        ++D+
Sbjct: 588 MLKERVSPNEITLTAVISACSRA-----GLVQEGREIFRMMQEDFKMTPRKQHYGCMVDL 642

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
             + G   +A      MP    +S W++++  
Sbjct: 643 LGRAGRLQEAEEFIQSMPCEPDISVWHALLGA 674



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/440 (24%), Positives = 196/440 (44%), Gaps = 68/440 (15%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV----SWNLMIS 230
           GK++ G   V   GG V+          K G + +A  L   +  R L+    ++  +I 
Sbjct: 14  GKELDGPTSVS--GGEVW-------RLCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIE 64

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
              K  + +    + +++  LG+  D    ++++    +   +  A ++F  +  +D V 
Sbjct: 65  HCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVT 124

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W++MI  Y  N     A   F  M   ++ P++ +  S++ +C   + L  G+ +H    
Sbjct: 125 WSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVK 184

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            +G++ D+ V++ALI MY KCG    A  VF+ M  RNVVSW ++I   AQ+ +  EA  
Sbjct: 185 AMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFE 244

Query: 411 LYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERG---------------- 443
           LY+++LQ  + P++ TFVS+L++C           +H+ + ERG                
Sbjct: 245 LYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYC 304

Query: 444 --------QNHFDSISAVHGITPSLDHYACMINLLGRSS-----DVDKAVDLIKSLPHK- 489
                   +  FD +S    I+     ++ MI    +S       +D+   L++ +  + 
Sbjct: 305 KCNSVQEAREIFDRMSKRDVIS-----WSAMIAGYAQSGYKDKESIDEVFQLLERMRREG 359

Query: 490 --PNSLIWSTLLSVCAMKGDIKHGEMAARHL----FELEPINAGPYIMLSNMYAACGRWE 543
             PN + + ++L  C   G ++ G      L    FEL+         + NMYA CG   
Sbjct: 360 VFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDR---SLQTAIFNMYAKCGSIY 416

Query: 544 DVASIRSSMKSKNVKKFAAY 563
           +   + S M +KNV  + ++
Sbjct: 417 EAEQVFSKMANKNVVAWTSF 436


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 389/665 (58%), Gaps = 47/665 (7%)

Query: 33   CTRVND-VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
            C R++D ++L +R+            T      ++  YA+ G++  AR +FD++   +++
Sbjct: 440  CGRLDDAIQLYERVPEQ---------TVATKTAMMTAYAQVGRIQKARLIFDEILNPNVV 490

Query: 92   SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
            +WNA+++ + ++G +++ + LF KMP+++S S+   IAGF     SREAL++   + +  
Sbjct: 491  AWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSG 550

Query: 152  FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              P+D +  SAL+ACA + D+  G+ IH   +      N +V N L  MYAK G ++   
Sbjct: 551  SVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGS 610

Query: 212  WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             +F  +  ++ VSWN +ISG  +N                                    
Sbjct: 611  HVFRTIRVKDTVSWNSLISGLSENYM---------------------------------- 636

Query: 272  RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
             +DDA  +F  + ++D V WT +I  Y Q G  E AL LF +ML+  ++P++ +++S++S
Sbjct: 637  -LDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLS 695

Query: 332  SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            +C  L ++  G+  H     LG D  L V ++LI MY KCG  +D + VF  MP  ++++
Sbjct: 696  ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLIT 754

Query: 392  WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
            WN+++ G AQNG   EA+ +++++  E + PD  +F+ VL AC HA L + G  HF+S++
Sbjct: 755  WNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMT 814

Query: 452  AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
              +GI P + HY CM++LLGR+  + +A  LI+++P KP+S+IW  LL  C +  +++ G
Sbjct: 815  QKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELG 874

Query: 512  EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
            +  A  LF++    +  Y++LSN++A+ G W+ VA IR  MK + + K    SWI++ NK
Sbjct: 875  QRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNK 934

Query: 572  VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
            +H FV+ DRTH + E IY  L +     +  G+ P+T  VLHD +EE+K   + YHSEKL
Sbjct: 935  LHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDTNFVLHDVEEEQKQNELLYHSEKL 994

Query: 632  ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
            A+ + ++  P+G +PI+I+KN+R+CGDCH FMKF S +  R II+RD NRFHHF  G+CS
Sbjct: 995  AVVFGILSTPNG-SPIQIIKNLRICGDCHTFMKFMSKVTLRKIIIRDGNRFHHFRDGSCS 1053

Query: 692  CKDNW 696
            C D W
Sbjct: 1054 CGDYW 1058



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 145/513 (28%), Positives = 240/513 (46%), Gaps = 72/513 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y ++G L  AR LFD+MP +++ SWN++++ +     + + R LFD+MP R+SV
Sbjct: 268 NAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSV 327

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   I+G+ +     EA  VF +M +    P     V  L+A   L DL     +    
Sbjct: 328 SWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIA 387

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +     G+V V +A+ + Y + G +D A   F+ M  RN  SW  MI+ + + G+    I
Sbjct: 388 IKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAI 447

Query: 243 DLF------------------------QEMQLLG---LNPDEVTVSNILGACFQTGRIDD 275
            L+                        Q+ +L+    LNP+ V  + I+    Q G + +
Sbjct: 448 QLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKE 507

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  K++  W  MI G+ QN +  +AL L  E+      P   S +S +S+CA 
Sbjct: 508 AKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACAN 567

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +  +  G+V+H  A+  G   +  V + LI MY KCG  +D   VF  +  ++ VSWNS+
Sbjct: 568 IGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSL 627

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I+G ++N    +A  +++K+     K D  ++ +++SA + A                HG
Sbjct: 628 ISGLSENYMLDDARVVFEKM----PKRDVVSWTAIISAYVQAG---------------HG 668

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
              +LD +   +++L R                KPN L  ++LLS C   G IK GE   
Sbjct: 669 -EVALDLF---LDMLARGI--------------KPNQLTVTSLLSACGNLGAIKLGEQFH 710

Query: 516 RHLFELEPINAGPYIMLSN----MYAACGRWED 544
             +F+L       ++ + N    MY  CG +ED
Sbjct: 711 ALIFKL---GFDTFLFVGNSLITMYFKCG-YED 739



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 142/552 (25%), Positives = 241/552 (43%), Gaps = 108/552 (19%)

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           + P   +   N  +    R G V++ R +F++M  RD VS+N+ I G++  G   EA  +
Sbjct: 165 ETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLL 224

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F     D F                                  +G N+     L   YAK
Sbjct: 225 F-----DAF----------------------------------VGKNIRTWTILLTGYAK 245

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV--- 260
            G I++AR +F+ M  RN+VSWN MISGY++NG  K    LF EM      P++      
Sbjct: 246 EGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEM------PEKNVASWN 299

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           S + G C    R+ +A  LF  + E+++V W  MI GY       +A  +F +M     R
Sbjct: 300 SVVTGYC-HCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD+     V+S+   L  L     +   A+  G + D++V SA+++ Y + G  D A   
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  MP RN  SW +MI  +AQ G+  +A+ LY+++ ++ +     T  ++++A       
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRI 474

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL-- 498
           ++ +  FD I     + P++  +  +I    ++  + +A DL + +P K NS  W+ +  
Sbjct: 475 QKARLIFDEI-----LNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVK-NSASWAAMIA 528

Query: 499 ---------------------------------LSVCAMKGDIKHGEMAARHLFELEP-I 524
                                            LS CA  GD++ G +   H   ++   
Sbjct: 529 GFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVI--HSLAIKTGC 586

Query: 525 NAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
               Y+M  L +MYA CG  ED + +  +++ K+       SW    N +   +SE+   
Sbjct: 587 QFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKD-----TVSW----NSLISGLSENYML 637

Query: 583 PETEIIYEELSK 594
            +  +++E++ K
Sbjct: 638 DDARVVFEKMPK 649



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 133/552 (24%), Positives = 251/552 (45%), Gaps = 87/552 (15%)

Query: 56  PNT-TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           P T  F  N  +    + G++  AR +F++M  RD++SWN++++ ++++G V + R LFD
Sbjct: 167 PQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD 226

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
               ++  ++   + G+A +G   EA +VF  M     E    +  + ++   Q  DL+ 
Sbjct: 227 AFVGKNIRTWTILLTGYAKEGRIEEAREVFESMT----ERNVVSWNAMISGYVQNGDLKN 282

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            +++  ++   N+       N++   Y     + +AR LFD+M  RN VSW +MISGY+ 
Sbjct: 283 ARKLFDEMPEKNVAS----WNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVH 338

Query: 235 NGQPKKCIDLFQEM-------------------------QLLG-LNP---------DEVT 259
                +  D+F +M                         +L+G L P         D V 
Sbjct: 339 ISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVV 398

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            S IL A  + G +D A   F  + E++   WTTMI  + Q G+ +DA+ L+  +  + V
Sbjct: 399 GSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV 458

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
                + ++++++ A++  +   +++  +     ++ +++  +A+I  Y + G+  +A  
Sbjct: 459 A----TKTAMMTAYAQVGRIQKARLIFDEI----LNPNVVAWNAIIAGYTQNGMLKEAKD 510

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F  MP +N  SW +MI G+ QN +  EAL L  +L +    P   +F S LSAC +   
Sbjct: 511 LFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGD 570

Query: 440 FERGQ------------------NHFDSISAVHGITPSLDH------------YACMINL 469
            E G+                  N   S+ A  G      H            +  +I+ 
Sbjct: 571 VEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISG 630

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP- 528
           L  +  +D A  + + +P K + + W+ ++S     G   HGE+A     ++      P 
Sbjct: 631 LSENYMLDDARVVFEKMP-KRDVVSWTAIISAYVQAG---HGEVALDLFLDMLARGIKPN 686

Query: 529 YIMLSNMYAACG 540
            + ++++ +ACG
Sbjct: 687 QLTVTSLLSACG 698



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 173/346 (50%), Gaps = 13/346 (3%)

Query: 8   RQAID---TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R+A++    L+  G   ++ ++T  +  C  + DVE+ + + S       + N+ ++ N 
Sbjct: 537 REALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS-YVMNG 595

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YAK G +     +F  + ++D +SWN+L+S  + +  + D R +F+KMP RD VS+
Sbjct: 596 LISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSW 655

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I+ +   G    AL +F  M     +P   T  S L+AC  L  ++ G+Q H  I  
Sbjct: 656 TAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFK 715

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                 +FV N+L  MY K G  D    +F+ M   +L++WN ++ G  +NG  K+ I +
Sbjct: 716 LGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKI 774

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F++M++ G+ PD+++   +L AC   G +D+    F+ + +K  +      +T M+    
Sbjct: 775 FEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLG 834

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           + G   +A  L   M    V+PD     +++ +C    ++  GQ V
Sbjct: 835 RAGYLSEAEALIENM---PVKPDSVIWEALLGACRIHRNVELGQRV 877


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/714 (37%), Positives = 403/714 (56%), Gaps = 74/714 (10%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P  T++ N LL  YA+SG+L  AR LFD MP  ++ + NALLSA A +  + D+  LF  
Sbjct: 42  PPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSALAHARLLPDMDRLFAS 101

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-------RFEPTDYTHVSALNACAQ 168
           MP RD+VSYN  IAGF+  G    A   +  + ++       R  P+  T    + A + 
Sbjct: 102 MPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGMVMAASA 161

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L D   G+Q+H +I+    G   F  + L DMYAK G I  A+ +FD M  +N+V +N M
Sbjct: 162 LGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNVVMYNTM 221

Query: 229 ISGYLK-------------------------------NGQPKKCIDLFQEMQLLGLNPDE 257
           I+G L+                               NG   + +D+F+ M+  G+  D+
Sbjct: 222 ITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQ 281

Query: 258 VTVSNILGAC-----FQTGR------------------------------IDDAGRLFHV 282
            T  +IL AC      + G+                              I  A  +F  
Sbjct: 282 YTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRR 341

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +  K+ + WT MIVGY QNG  E+A+ +F+EM ++ ++P+ F++ SV+SSCA LASL  G
Sbjct: 342 MTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEG 401

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
              H  A+V G+   + VSSAL+ +Y KCG  +DA  +F+ MP  + VS+ ++++GYAQ 
Sbjct: 402 AQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQF 461

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+  E + L++K+L + +KP+  TF+ VLSAC  + L E+G ++F S+   HGI    DH
Sbjct: 462 GKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDH 521

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+L  RS  + +A + I+ +P  P+++ W+TLLS C ++GD++ G+ AA +L + +
Sbjct: 522 YTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTD 581

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N   Y++L +M+A+ G W +VA +R  M+ + VKK    SWI+  N+VH F ++D++H
Sbjct: 582 PQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSH 641

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P +  IYE+L  L  K+ E G+ P+   VLHD  + EKV  +  HSEKLA+A+ LI  P 
Sbjct: 642 PFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPE 701

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + PIR++KN+RVC DCH   KF S I GR I++RD+ RFH F  G CSC D W
Sbjct: 702 EM-PIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/701 (35%), Positives = 404/701 (57%), Gaps = 44/701 (6%)

Query: 5   HKLRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           H+   A+ T   + +RG           V  C  ++ ++ A+++     ++ ++ ++ F+
Sbjct: 93  HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDS-FV 151

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            + L+H Y K  ++  A  +FD+M   D++SW+AL++A+AR G V + + LF +M   DS
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG--DS 209

Query: 122 ------VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                 +S+N  IAGF + G   EA+ +F  M    FEP   T  S L A   L DL  G
Sbjct: 210 GVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMG 269

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             IHG ++   L  +  V +AL DMY K     +   +FD+M++ ++ S N  I G  +N
Sbjct: 270 ILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
           GQ +  + LF++++  G+                               E + V WT+MI
Sbjct: 330 GQVESSLRLFRQLKDQGM-------------------------------ELNVVSWTSMI 358

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
              +QNG++ +AL LF EM    V+P+  +I  ++ +C  +A+L HG+  H  ++  G+ 
Sbjct: 359 ACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIS 418

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V SALIDMY KCG    +   F+ +PT+N+V WN++I GYA +G+  EA+ ++D +
Sbjct: 419 TDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLM 478

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +   KPD  +F  VLSAC  + L E G  +F+S+S+ +GI   ++HYACM+ LL R+  
Sbjct: 479 QRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGK 538

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +++A  +I+ +P  P++ +W  LLS C +  ++  GE+AA  LFELEP N G YI+LSN+
Sbjct: 539 LEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNI 598

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YA+ G W +V  +R  MK+K ++K    SWIE+ NKVH  ++ D++HP+   I E+L KL
Sbjct: 599 YASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKL 658

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
             ++++ G+ P    VL D +E++K + +C HSEKLA+ + L+  P G  P++++KN+R+
Sbjct: 659 SMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGY-PLQVIKNLRI 717

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CGDCH+ +KF S    R I +RD+NRFHHF  G CSC D W
Sbjct: 718 CGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 184/491 (37%), Gaps = 121/491 (24%)

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
            S +AL +   +Q   F   + T  S          L + +Q H  I+   L  +  +  
Sbjct: 3   LSAQALALLDSVQHTIFNCLNSTTAS----------LSQTRQAHAHILKTGLFNDTHLAT 52

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            L   YA       A  + D +   N+ S++ +I  + K  Q    +  F +M   GL P
Sbjct: 53  KLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMP 112

Query: 256 DEVTVSNILGAC-----------------------------------FQTGRIDDAGRLF 280
           D   + + + AC                                    +  +I DA R+F
Sbjct: 113 DNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVF 172

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-------------------- 320
             + E D V W+ ++  Y + G  ++A  LF+EM    V+                    
Sbjct: 173 DRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYS 232

Query: 321 ---------------PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
                          PD  +ISSV+ +   L  L  G ++HG  +  G+  D  VSSALI
Sbjct: 233 EAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALI 292

Query: 366 DMYCKCGVTDDAWTVFNMMP-----------------------------------TRNVV 390
           DMY KC  T +   VF+ M                                      NVV
Sbjct: 293 DMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVV 352

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW SMI   +QNG+D+EAL L+ ++    +KP+S T   +L AC +      G+      
Sbjct: 353 SWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAA-HCF 411

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S   GI+  +   + +I++  +   +  +      +P K N + W+ +++  AM G  K 
Sbjct: 412 SLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAKE 470

Query: 511 GEMAARHLFEL 521
               A  +F+L
Sbjct: 471 ----AMEIFDL 477


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/636 (38%), Positives = 386/636 (60%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+S  ++SG ++D R +FD M  +DSVS+N+ IAG    G   EA + F+ MQ    +
Sbjct: 242 NSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAK 301

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT  T  S + +CA L +L   + +H K +   L  N  V  AL     K  EID A  L
Sbjct: 302 PTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSL 361

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG------- 265
           F  M+  +++VSW  MISGYL+NG   + ++LF  M+  G+ P+  T S IL        
Sbjct: 362 FSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI 421

Query: 266 ------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                   A  + G I DA ++F +I+ KD + W+ M+ GY Q 
Sbjct: 422 SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQA 481

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSC-AKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G+ E+A  +F+++  E ++P++F+  S++++C A  AS+  G+  H  A+ L +++ L V
Sbjct: 482 GETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCV 541

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SS+L+ +Y K G  + A  +F     R++VSWNSMI+GYAQ+GQ  +AL +++++ + NL
Sbjct: 542 SSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           + D+ TF+ V+SAC HA L  +GQN+F+ +   H I P+++HY+CMI+L  R+  + KA+
Sbjct: 602 EVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAM 661

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           D+I  +P  P + +W  +L+   +  +I+ G++AA  +  LEP ++  Y++LSN+YAA G
Sbjct: 662 DIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAG 721

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            W +  ++R  M  + VKK   YSWIE+ NK + F++ D +HP ++ IY +LS+L  +L+
Sbjct: 722 NWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLR 781

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  V HD ++E+K   + +HSE+LA+A+ LI     + P++I+KN+RVCGDCH
Sbjct: 782 DVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEI-PLQIVKNLRVCGDCH 840

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            F+K  S +  R I++RDSNRFHHF GG CSC D W
Sbjct: 841 SFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 234/467 (50%), Gaps = 48/467 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  + ++G+V+D R +FD+M  RD VS+N+ + G++   F+ +  ++F  MQ + + 
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT  + + A A    +  G QIH  +V         V N+L  M +K G +  AR +
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD M N++ VSWN MI+G++ NGQ  +  + F  MQL G  P   T ++++ +C      
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKEL 320

Query: 268 ----------FQTG-------------------RIDDAGRLFHVIKEKDNVC-WTTMIVG 297
                      ++G                    IDDA  LF ++    +V  WT MI G
Sbjct: 321 GLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISG 380

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y QNG  + A+ LF+ M  E V+P+ F+ S++++    +        +H + +    +  
Sbjct: 381 YLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT----VQHAVFISEIHAEVIKTNYEKS 436

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +AL+D + K G   DA  VF ++ T++V++W++M+ GYAQ G+  EA  ++ +L +
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           E +KP+ FTF S+++AC            F + +    +  +L   + ++ L  +  +++
Sbjct: 497 EGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIE 556

Query: 478 KAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHG-----EMAARHL 518
            A ++ K    K   L+ W++++S  A  G  K       EM  R+L
Sbjct: 557 SAHEIFKR--QKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 251/523 (47%), Gaps = 75/523 (14%)

Query: 94  NALLSAHARSGSVQDL---------RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           N LL +H  + + + L         + LFD+ P+RD   +N  +  ++    ++EAL +F
Sbjct: 31  NPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLF 90

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             + +    P  YT    L+ CA   +   G+Q+H + V   L  ++ V N+L DMY K 
Sbjct: 91  VSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKT 150

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +   R +FD M +R++VSWN +++GY  N    +  +LF  MQ+ G  PD  TVS ++
Sbjct: 151 GNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVI 210

Query: 265 GAC--------------------FQT---------------GRIDDAGRLFHVIKEKDNV 289
            A                     F+T               G + DA  +F  ++ KD+V
Sbjct: 211 AALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSV 270

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W +MI G+  NG++ +A   FN M     +P   + +SV+ SCA L  L   +V+H K 
Sbjct: 271 SWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKT 330

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEA 408
           +  G+  +  V +AL+    KC   DDA+++F++M   ++VVSW +MI+GY QNG   +A
Sbjct: 331 LKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQA 390

Query: 409 LALYDKLLQENLKPDSFTFVSVLS-------ACLHADLFERGQNHFDSISAVHGITPSLD 461
           + L+  + +E +KP+ FT+ ++L+       + +HA++ +       S+      T  LD
Sbjct: 391 VNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVG-----TALLD 445

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
            +      +G  SD  K  +LI++     + + WS +L+  A  G+    E AA+   +L
Sbjct: 446 AFV----KIGNISDAVKVFELIET----KDVIAWSAMLAGYAQAGET---EEAAKIFHQL 494

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
                 P     N +  C       +  +S++    K+F AY+
Sbjct: 495 TREGIKP-----NEFTFCSIINACTAPTASVEQG--KQFHAYA 530



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 89/207 (42%), Gaps = 36/207 (17%)

Query: 14  LYSRGQAATEEAYTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           L   G    E  +  ++  CT     VE  K+  ++  +     N   + + L+  YAK 
Sbjct: 494 LTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYA-IKLRLNNALCVSSSLVTLYAKR 552

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G +  A ++F +   RD++SWN+++S +A+ G                            
Sbjct: 553 GNIESAHEIFKRQKERDLVSWNSMISGYAQHGQ--------------------------- 585

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
               +++AL+VF  MQK   E    T +  ++ACA    + +G Q +  I++ +   N  
Sbjct: 586 ----AKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKG-QNYFNIMINDHHINPT 640

Query: 193 VR--NALTDMYAKGGEIDKARWLFDRM 217
           +   + + D+Y++ G + KA  + + M
Sbjct: 641 MEHYSCMIDLYSRAGMLGKAMDIINGM 667


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/643 (37%), Positives = 381/643 (59%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+  NA ++ + ++ SV++    F  M I +  S N  ++GF +     +  ++  ++ 
Sbjct: 124 DILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLL 183

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            + FEP  YT +S L  CA   DL  GK IHG+++   +  +  + N+L ++YAK G  +
Sbjct: 184 VEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSAN 243

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  +  R++VSW  +I+G++  G     + +F +M   G NP+  T  +IL +C 
Sbjct: 244 YACKVFGEIPERDVVSWTALITGFVAEGYGSG-LRIFNQMLAEGFNPNMYTFISILRSCS 302

Query: 269 QTGRID-----------------------------------DAGRLFHVIKEKDNVCWTT 293
               +D                                   DA  +F+ + ++D   WT 
Sbjct: 303 SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTV 362

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++ GY Q+G+ E A+  F +M  E V+P++F+++S +S C+++A+L  G+ +H  A+  G
Sbjct: 363 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG 422

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+ V+SAL+DMY KCG  +DA  VF+ + +R+ VSWN++I GY+Q+GQ  +AL  ++
Sbjct: 423 QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFE 482

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L E   PD  TF+ VLSAC H  L E G+ HF+S+S ++GITP+++HYACM+++LGR+
Sbjct: 483 AMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRA 542

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
               +    I+ +    N LIW T+L  C M G+I+ GE AA  LFELEP     YI+LS
Sbjct: 543 GKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLS 602

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NM+AA G W+DV ++R+ M ++ VKK    SW+E++ +VH F+S D +HP+   I+ +L 
Sbjct: 603 NMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQ 662

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L +KL   G++PNT  VLH+  + EK + + YHSE+LALA+ L+      T IRI KN+
Sbjct: 663 DLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKT-IRIFKNL 721

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+CGDCH FMK  S+I  + +++RD N FHHF  G+CSC++ W
Sbjct: 722 RICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 131/534 (24%), Positives = 236/534 (44%), Gaps = 77/534 (14%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS-REALQVFSRMQKDR 151
           W++L++ + +  S+Q  R + ++MPI+D   +N  ++  AN  +  +EA+Q+F  M+  R
Sbjct: 27  WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSS-ANSPYPLQEAVQLFYLMRHTR 85

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
                +   S ++A A L D   G+ IH  +       ++ + NA   MY K   ++   
Sbjct: 86  IRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGW 145

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             F  M   NL S N ++SG+       +   +  ++ + G  P+  T  +IL  C   G
Sbjct: 146 QFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKG 205

Query: 272 RIDD-----------------------------------AGRLFHVIKEKDNVCWTTMIV 296
            +++                                   A ++F  I E+D V WT +I 
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 265

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G+   G     L +FN+ML+E   P+ ++  S++ SC+ L+ +  G+ VH + V   +D 
Sbjct: 266 GFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 324

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +  V +AL+DMY K    +DA T+FN +  R++ +W  ++ GYAQ+GQ  +A+  + ++ 
Sbjct: 325 NDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQ 384

Query: 417 QENLKPDSFTFVSVLSAC-----------LHADLFERGQNH------------------- 446
           +E +KP+ FT  S LS C           LH+   + GQ+                    
Sbjct: 385 REGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVE 444

Query: 447 -----FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
                FD +  V   T S +   C  +  G+     KA + +      P+ + +  +LS 
Sbjct: 445 DAEVVFDGL--VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSA 502

Query: 502 CAMKGDIKHGEMAARHLFELEPINAG--PYIMLSNMYAACGRWEDVASIRSSMK 553
           C+  G I+ G+     L ++  I      Y  + ++    G++ +V S    MK
Sbjct: 503 CSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 556



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 167/324 (51%), Gaps = 14/324 (4%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A+ + + +   D +   AL+  +A++  ++D   +F+++  RD  ++   +AG+A
Sbjct: 310 GKQVHAQIVKNSLDGNDFVG-TALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             G   +A++ F +MQ++  +P ++T  S+L+ C+++  L  G+Q+H   +     G++F
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMF 428

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V +AL DMYAK G ++ A  +FD + +R+ VSWN +I GY ++GQ  K +  F+ M   G
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 488

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDA 307
             PDEVT   +L AC   G I++  + F+ + +   +      +  M+    + GK  + 
Sbjct: 489 TVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEV 548

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALI 365
                EM    +  +     +V+ +C    ++  G+    K   L   +D + ++   L 
Sbjct: 549 ESFIEEM---KLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYIL---LS 602

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNV 389
           +M+   G+ DD   V  +M TR V
Sbjct: 603 NMFAAKGMWDDVTNVRALMSTRGV 626



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/453 (18%), Positives = 188/453 (41%), Gaps = 74/453 (16%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K+I  +++   +  +  + ++L ++Y K   +  AR + + M  +++  WN  +S     
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
              ++ + LF  M+   +  ++   ++++ A                             
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   +T  +++  + F  +  ++      ++ G+      +    +  ++L E   
Sbjct: 129 NAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFE 188

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P+ ++  S++ +CA    L  G+ +HG+ +  G++ D  + ++L+++Y KCG  + A  V
Sbjct: 189 PNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKV 248

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------ 434
           F  +P R+VVSW ++I G+   G     L +++++L E   P+ +TF+S+L +C      
Sbjct: 249 FGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDV 307

Query: 435 -----LHADLFER----------------GQNHF-DSISAVHGITPSLDHYACMINLLGR 472
                +HA + +                  +N F +    +       D +A  + + G 
Sbjct: 308 DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGY 367

Query: 473 SSD--VDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           + D   +KAV     +     KPN    ++ LS C+    +  G     H   ++   +G
Sbjct: 368 AQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL--HSMAIKAGQSG 425

Query: 528 PYIM---LSNMYAACGRWEDVASIRSSMKSKNV 557
              +   L +MYA CG  ED   +   + S++ 
Sbjct: 426 DMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 458



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+R+  ++  ++L S M +   +    F+ + L+  YAK G +  A  +FD +  RD +S
Sbjct: 402 CSRIATLDSGRQLHS-MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 460

Query: 93  WNALLSAHARSG----SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           WN ++  +++ G    +++   A+ D+  + D V++   ++  ++ G   E  + F+ + 
Sbjct: 461 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 520

Query: 149 K 149
           K
Sbjct: 521 K 521


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 240/639 (37%), Positives = 383/639 (59%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+LL ++ ++ S+     LF+ +P RDSV++N  + G++ +GF+REA+ +F +MQ+  + 
Sbjct: 237 NSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYR 296

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT++T  + L A  QL D+  G+Q+HG +V  N   NVFV NAL D Y+K   + +A  L
Sbjct: 297 PTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKL 356

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG------------------LNP 255
           F  M   + +S+N++++ Y  NG+ K+ ++LF+E+Q  G                  LN 
Sbjct: 357 FYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNL 416

Query: 256 D----------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
           D                E+ V N L   + + G   +A R+F  +  + +V WT MI  Y
Sbjct: 417 DIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSY 476

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  ED L LF EM    +  D  + +S+V +CA LASL  G+ +H   +  G   ++
Sbjct: 477 VQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNV 536

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              SAL+DMY KCG   DA  +F  MP RN VSWN++I+ YAQNG     L L++++++ 
Sbjct: 537 FSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRS 596

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L+PDS + +S+L AC H  L E G  +FDS++ ++ + P  +HYA  I++L R    D+
Sbjct: 597 GLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDE 656

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA 537
           A  L+  +P +P+ ++WS++L+ C +  + +  + AA  LF ++ + +A PY+ +SN+YA
Sbjct: 657 AEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYA 716

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A G W++V  ++ +M+ + VKK  AYSW+EI +K H F + D+THP+   I ++L +L +
Sbjct: 717 AAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMREIMKKLDELEE 776

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+ + G+ P++   LH+  EE KV+S+ YHSE++A+A+ LI  P G +PI +MKN+R C 
Sbjct: 777 KMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEG-SPILVMKNLRACT 835

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S I+ R I +RDS+RFHHF  G C+C+D W
Sbjct: 836 DCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/540 (26%), Positives = 262/540 (48%), Gaps = 50/540 (9%)

Query: 29  LVLDCTRVNDVEL-AKRLQSHMDLNF----YEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           ++  CTR     L A +   H+D +     + PNT +  N L+  + + G L  AR LFD
Sbjct: 67  IIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNT-YRSNFLVKSFLQRGDLNGARKLFD 125

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP ++I S N ++  + +SG++ + R LFD M  R +V++   I G+A     REA  +
Sbjct: 126 EMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGL 185

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M +   +P   +  + L+   +   +   +Q+H  ++       + V N+L D Y K
Sbjct: 186 FIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCK 245

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
              +  A  LF+ +  R+ V++N +++GY K G  ++ I+LF +MQ +G  P E T + I
Sbjct: 246 TRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAI 305

Query: 264 LGACFQT-----------------------------------GRIDDAGRLFHVIKEKDN 288
           L A  Q                                     R+ +A +LF+ + E D 
Sbjct: 306 LTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDG 365

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + +  ++  Y  NG+ +++L LF E+         F  ++++S  A   +L  G+ +H +
Sbjct: 366 ISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQ 425

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +V     ++LV ++L+DMY KCG   +A  +F+ +  ++ V W +MI+ Y Q G   + 
Sbjct: 426 TIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDG 485

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           L L+ ++ +  +  D+ T+ S++ AC   A L    Q H   I +  G   ++   + ++
Sbjct: 486 LKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGS--GYISNVFSGSALV 543

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           ++  +   +  A+ + + +P + NS+ W+ L+S  A  GD   G+   R LFE E + +G
Sbjct: 544 DMYAKCGSIKDALQMFQEMPVR-NSVSWNALISAYAQNGD---GDCTLR-LFE-EMVRSG 597



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 186/396 (46%), Gaps = 40/396 (10%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS----WNALLSAHARSGSVQDLRALFDK 115
           F    LL   A S  L   R +  +  + D IS     N+L+  +A+ G   +   +F  
Sbjct: 401 FPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSD 460

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           + I+ SV +   I+ +  KG   + L++F  MQ+ +      T+ S + ACA L  L  G
Sbjct: 461 LAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLG 520

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQ+H  I+      NVF  +AL DMYAK G I  A  +F  M  RN VSWN +IS Y +N
Sbjct: 521 KQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQN 580

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI-------DDAGRLFHVIKEKDN 288
           G     + LF+EM   GL PD V++ +IL AC   G +       D   R++ ++ +K++
Sbjct: 581 GDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEH 640

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
             + + I    + G+ ++A  L  +M  E   PD+   SSV++SC     ++  Q +  K
Sbjct: 641 --YASTIDMLCRGGRFDEAEKLMAQMPFE---PDEIMWSSVLNSCG----IHKNQELAKK 691

Query: 349 AVVLGVDDDLLVSSA----LIDMYCKCGVTDDAWTVFNMMPTRNV-----VSWNSMIN-- 397
           A     +  +L  +A    + ++Y   G  D+   V   M  R V      SW  + +  
Sbjct: 692 AANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKT 751

Query: 398 --------GYAQNGQDLEAL-ALYDKLLQENLKPDS 424
                    + Q  + ++ L  L +K++++  KPDS
Sbjct: 752 HVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDS 787



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 123/276 (44%), Gaps = 48/276 (17%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
            A    Y  +V  C  +  + L K+L SH+  + Y  N  F  + L+  YAK G +  A 
Sbjct: 498 GADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNV-FSGSALVDMYAKCGSIKDAL 556

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-----DSVSYNTAIAGFANK 134
            +F +MP+R+ +SWNAL+SA+A++G       LF++M +R     DSVS  + +   ++ 
Sbjct: 557 QMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEM-VRSGLQPDSVSLLSILCACSHC 615

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   E LQ F  M +                   +  L   K+ +   +           
Sbjct: 616 GLVEEGLQYFDSMTR-------------------IYKLVPKKEHYASTI----------- 645

Query: 195 NALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMIS--GYLKNGQ-PKKCIDLFQEMQL 250
               DM  +GG  D+A  L  +M    + + W+ +++  G  KN +  KK  +    M++
Sbjct: 646 ----DMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKV 701

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           L      VT+SNI  A    G  D+ G++   ++E+
Sbjct: 702 LRDAAPYVTMSNIYAA---AGEWDNVGKVKKAMRER 734


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/625 (37%), Positives = 367/625 (58%), Gaps = 44/625 (7%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR + D+MP +D ++W  ++  + R G V   R++F+++  +  V +N  I+G+   G  
Sbjct: 222 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 281

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF----- 192
            +A ++F RM  ++    ++T  S L+ACA       GK +HG+I+   L  N       
Sbjct: 282 ADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII--RLQPNFVPEAAL 339

Query: 193 -VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V NAL  +Y+KGG+I  A+ +FD MN +++VSWN ++SGY+ +G               
Sbjct: 340 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSG--------------- 384

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                          C     +D A  +F V+  K+++ W  M+ GY   G  EDAL LF
Sbjct: 385 ---------------C-----LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 424

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           N+M +EDV+P  ++ +  +++C +L +L HG+ +H   V  G +      +AL+ MY KC
Sbjct: 425 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA  VF +MP  + VSWN+MI+   Q+G   EAL L+D+++ E + PD  +F+++L
Sbjct: 485 GAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           +AC HA L + G ++F+S+    GI+P  DHYA +I+LLGRS  + +A DLIK++P +P 
Sbjct: 545 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 604

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
             IW  +LS C   GD++ G  AA  LF + P + G YI+LSN Y+A GRW D A +R  
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 664

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
           M+ + VKK    SWIE+ +K+H F+  D  HPE + +Y+ L  +  ++++ G+ P+TK V
Sbjct: 665 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 724

Query: 612 LHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
           LHD +  EK   +  HSEKLA+ + L+K P G T + ++KN+R+CGDCH  M F S  +G
Sbjct: 725 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT-VTVLKNLRICGDCHTAMMFMSKAVG 783

Query: 672 RTIILRDSNRFHHFVGGNCSCKDNW 696
           R I++RD  RFHHF  G CSC + W
Sbjct: 784 REIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 139/242 (57%), Gaps = 4/242 (1%)

Query: 44  RLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS 103
           RLQ     NF       ++N L+  Y+K GK+  A+ +FD M L+D++SWN +LS +  S
Sbjct: 328 RLQP----NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 383

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           G +     +F  MP ++ +S+   ++G+ + G S +AL++F++M+ +  +P DYT+  A+
Sbjct: 384 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 443

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC +L  L+ G+Q+H  +V      +    NAL  MYAK G ++ AR +F  M N + V
Sbjct: 444 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 503

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SWN MIS   ++G  ++ ++LF +M   G++PD ++   IL AC   G +D+    F  +
Sbjct: 504 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 563

Query: 284 KE 285
           K 
Sbjct: 564 KR 565


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/783 (34%), Positives = 405/783 (51%), Gaps = 105/783 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNT-------------- 58
           G       Y +L   CT + D  L K+++ H+      LN YE NT              
Sbjct: 52  GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEA 111

Query: 59  -----------TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI----------------- 90
                          N L+  YA+ G +  A  LF +M    +                 
Sbjct: 112 RQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSP 171

Query: 91  --ISWN--------------------ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
             ++W                     AL+S + + GS+ D R +FD + IRD  ++N  +
Sbjct: 172 AGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMV 231

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
            G+A  G   +A ++F RMQ+   +P   + +S L+ C     L  GK +H + +   L 
Sbjct: 232 GGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLV 291

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            ++ V  +L  MY   G I+ AR +FD M  R++VSW +MI GY +NG  +    LF  M
Sbjct: 292 DDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 249 QLLGLNPDEVTVSNILGAC--------------------FQT---------------GRI 273
           Q  G+ PD +T  +I+ AC                    F T               G I
Sbjct: 352 QEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAI 411

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            DA ++F  +  +D V W+ MI  Y +NG   +A   F+ M   ++ PD  +  +++++C
Sbjct: 412 KDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNAC 471

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L +L  G  ++ +A+   +   + + +ALI M  K G  + A  +F+ M  R+V++WN
Sbjct: 472 GHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWN 531

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI GY+ +G   EAL L+D++L+E  +P+S TFV VLSAC  A   + G+  F  +   
Sbjct: 532 AMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEG 591

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
            GI P++  Y CM++LLGR+ ++D+A  LIKS+P KP S IWS+LL  C + G++   E 
Sbjct: 592 RGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAER 651

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA     ++P +   Y+ LS+MYAA G WE+VA +R  M+S+ ++K    +WIE+  KVH
Sbjct: 652 AAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVH 711

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            FV EDR+HP    IY EL++L+  ++  G+ P T+ VLHD  E++K ++I YHSEKLA+
Sbjct: 712 TFVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAI 771

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           AY ++  P G TPIRI KN+RVC DCH   KF S + GR II RD++RFHHF  G CSC 
Sbjct: 772 AYGVLSLPSG-TPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCG 830

Query: 694 DNW 696
           D W
Sbjct: 831 DYW 833


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 267/769 (34%), Positives = 420/769 (54%), Gaps = 115/769 (14%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           LA+ + +HM  + ++P   FL NRLL  Y KS  + YAR LF+++P  D I+   L++A+
Sbjct: 31  LARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLITAY 89

Query: 101 ARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
              G+++  R +F+  P+  RDSV YN  I G+A+ G    AL++F  M++D F P D+T
Sbjct: 90  CALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFT 149

Query: 159 HVSALNACAQLL-DLRRGKQIHGKIVVGNLGG-NVFVRNALTDMYAKGGE--------ID 208
             S L+A    + + ++  Q+H  +V   +G  +  V NAL  +Y K           + 
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGIPCSAMV 209

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKN-------------------------------GQ 237
            AR LFD M  R+ ++W  MI+GY++N                               G 
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGC 269

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTG--------------------- 271
            ++ + L ++M+ LG+  D++T + I+ AC     FQ G                     
Sbjct: 270 FQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS 329

Query: 272 -------------RIDDAGRLFHVIKEKDNVCW--------------------------- 291
                        ++D+A ++F+ +  ++ + W                           
Sbjct: 330 VSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKN 389

Query: 292 ----TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
               T MI G  QNG  ++ L LF +M  +   P  F+ +  +++C+ L +L +G+ +H 
Sbjct: 390 LLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHA 449

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           + V LG +  L V +A+I MY KCGV + A +VF  MP+ ++VSWNSMI    Q+G  ++
Sbjct: 450 QLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVK 509

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ L+D++L+E + PD  TF++VL+AC HA L E+G+++F+S+   +GITP  DHYA M+
Sbjct: 510 AIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMV 569

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L  R+     A  +I S+P KP + +W  LL+ C + G++  G  AA  LF+L P N G
Sbjct: 570 DLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDG 629

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++LSN+YA  GRW DVA +R  M+ + V+K  A SWIE++NKVH F+ +D  HPE   
Sbjct: 630 TYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLS 689

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           +Y  L +L  ++++ G+ P+TK VLHD + E+K  ++  HSEKLA+ + ++K P   T +
Sbjct: 690 VYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDAT-V 748

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+ KNIR+CGDCH   KF S +  R II+RD  RFHHF  G+CSC+D W
Sbjct: 749 RVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 8/304 (2%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF---LHNRLLHFYAKSGKLFYARDLF 82
           YT ++  C  V   ++ K++ +++  N   PN +F   + N L+  Y K+ K+  AR +F
Sbjct: 292 YTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
             MP+R+II+WNA+LS +  +G +++ ++ F++MP+++ ++    I+G A  GF  E L+
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F +M+ D FEP D+    AL AC+ L  L  G+Q+H ++V      ++ V NA+  MYA
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G ++ A  +F  M + +LVSWN MI+   ++G   K I+LF +M   G+ PD +T   
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC   G ++     F+ + E   +      +  M+  + + G    A I+ + M S+
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 318 DVRP 321
              P
Sbjct: 592 PGAP 595


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/666 (37%), Positives = 390/666 (58%), Gaps = 44/666 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G+L +A  L  ++   DII   AL++ +AR   ++  R  FD+M  +  V++N  IAG
Sbjct: 75  KQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAG 134

Query: 131 FANKGFSREALQVFSRM---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           ++  G  R AL+++  M     +  +P   T  SAL AC+ + D+ +G++I  + V    
Sbjct: 135 YSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGY 194

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +  V+NAL +MY+K G ++ AR +FDR+ NR++++WN MISGY K G   + ++LFQ 
Sbjct: 195 ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR 254

Query: 248 MQLLGLNPDEVTVSNILGAC-----FQTGR------------------------------ 272
           M      P+ VT   +L AC      + GR                              
Sbjct: 255 MGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSS 314

Query: 273 -IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            +++A ++F  ++ +D + W  +IV Y Q G+ +DAL +F +M  E+V P++ ++S+V+S
Sbjct: 315 SLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS 374

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA L +   G+ VH          D+++ ++L++MY +CG  DD   VF  +  +++VS
Sbjct: 375 ACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVS 434

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W+++I  YAQ+G     L  + +LLQE L  D  T VS LSAC H  + + G   F S+ 
Sbjct: 435 WSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMV 494

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             HG+ P   H+ CM++LL R+  ++ A +LI  +P  P+++ W++LLS C +  D K  
Sbjct: 495 GDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554

Query: 512 EMAARHLFELEPINAGPYI-MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
              A  LFELE  +    + +LSN+YA  GRW+DV   R +   +  +K    S+IEI++
Sbjct: 555 ARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEIND 611

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH+FV+ D++HPE E+I  E+ +L K++++AG+ P+ ++VLH+ +EEEK + +CYHSEK
Sbjct: 612 TVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEK 671

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY LI  P G TP+ I+KN+R C DCH   KF S I+GR I++RDS RFHHF  G+C
Sbjct: 672 LAIAYGLISTPPG-TPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSC 730

Query: 691 SCKDNW 696
           SCKD W
Sbjct: 731 SCKDYW 736



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 236/487 (48%), Gaps = 61/487 (12%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           + + GSV D  A+F  +   +SVS+   +A FA  G  REAL  + RM  +   P     
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           V A+  C+   DL++G+ +H  I+    L  ++ +  AL  MYA+  +++ AR  FD M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEM---QLLGLNPDEVTVSNILGAC-------- 267
            + LV+WN +I+GY +NG  +  + ++Q+M      G+ PD +T S+ L AC        
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G ++ A ++F  +K +D + W TMI GY +
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G    AL LF  M   D +P+  +   ++++C  L  L  G+ +H K    G + DL++
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301

Query: 361 SSALIDMYCKCGVT-DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
            + L++MY KC  + ++A  VF  + TR+V++WN +I  Y Q GQ  +AL ++ ++  EN
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMINLLGRS 473
           + P+  T  +VLSAC       +G+       AVH +  S    A       ++N+  R 
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGK-------AVHALIASGRCKADVVLENSLMNMYNRC 414

Query: 474 SDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
             +D  V +  ++  K  SL+ WSTL++  A  G   H      H +EL  E + A    
Sbjct: 415 GSLDDTVGVFAAIRDK--SLVSWSTLIAAYAQHG---HSRTGLEHFWELLQEGLAADDVT 469

Query: 531 MLSNMYA 537
           M+S + A
Sbjct: 470 MVSTLSA 476



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 210/445 (47%), Gaps = 71/445 (15%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++  +  C+ V D+   + +++    + Y  ++  + N L++ Y+K G L  AR +FD++
Sbjct: 166 FSSALYACSVVGDISQGREIEARTVASGYASDS-IVQNALINMYSKCGSLESARKVFDRL 224

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             RD+I+WN ++S +A+ G+                               + +AL++F 
Sbjct: 225 KNRDVIAWNTMISGYAKQGA-------------------------------ATQALELFQ 253

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-G 204
           RM  +  +P   T +  L AC  L DL +G+ IH K+       ++ + N L +MY K  
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCS 313

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
             +++AR +F+R+  R++++WN++I  Y++ GQ K  +D+F++MQL  + P+E+T+SN+L
Sbjct: 314 SSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 265 GACF-----------------------------------QTGRIDDAGRLFHVIKEKDNV 289
            AC                                    + G +DD   +F  I++K  V
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLV 433

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGK 348
            W+T+I  Y Q+G     L  F E+L E +  D  ++ S +S+C+    L  G Q     
Sbjct: 434 SWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSM 493

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLE 407
               G+  D      ++D+  + G  + A  + + MP   + V+W S+++G   +     
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKR 553

Query: 408 ALALYDKLLQENLKPDSFTFVSVLS 432
           A  + DKL +     D  + V++LS
Sbjct: 554 AARVADKLFELE-SEDEHSTVTLLS 577



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 196/435 (45%), Gaps = 80/435 (18%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K G +  A  +F  + + N VSW L+++ + +NG  ++ +  ++ M L GL PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 260 VSNILGACFQTGRIDDAGRLFHV------------------------------------- 282
               +G C  +  +   G+L H                                      
Sbjct: 61  FVVAIGVCSSSKDLKQ-GQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS---EDVRPDKFSISSVVSSCAKLASL 339
           + +K  V W  +I GY++NG    AL ++ +M+S   E ++PD  + SS + +C+ +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +  + V  G   D +V +ALI+MY KCG  + A  VF+ +  R+V++WN+MI+GY
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           A+ G   +AL L+ ++   + KP+  TF+ +L+AC + +  E+G+     +   HG    
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKE-HGYESD 298

Query: 460 LDHYACMINLLG----------------RSSDV----------------DKAVDLIKSLP 487
           L     ++N+                  R+ DV                  A+D+ K + 
Sbjct: 299 LVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 488 HK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRW 542
            +   PN +  S +LS CA+ G  + G+ A   L       A   +   L NMY  CG  
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGK-AVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 543 EDVASIRSSMKSKNV 557
           +D   + ++++ K++
Sbjct: 418 DDTVGVFAAIRDKSL 432


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 392/666 (58%), Gaps = 45/666 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y  + +   A+ LFDKMP R+ ISWN L+S + ++G + + R +FDKMP R+ V
Sbjct: 51  NAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+ + + G+  +G   EA  +F RM     E    +    L    +   +   +++   I
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMP----EKNVVSWTVMLGGLIEDGRVDEARRLFDMI 166

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            V ++   V   N +  + ++G  + +AR +FD M  RN+V+W  MISGY  N +     
Sbjct: 167 PVKDV---VASTNMIGGLCSEG-RLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVAR 222

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI------------------- 283
            LF+ M     + +EVT + +L    ++GRI++A  LF  +                   
Sbjct: 223 KLFEVMP----DKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNG 278

Query: 284 ------------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
                       KEKD+  W+ +I  Y + G E +AL LF+ M  E VRP+  SI S++S
Sbjct: 279 EVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILS 338

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            C  LASL HG+ VH + V    D D+ VSS LI MY KCG       VF+   ++++V 
Sbjct: 339 VCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVM 398

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WNS+I GYAQ+G   +AL ++ ++      PD  TF+ VLSAC +    + G   F+S+ 
Sbjct: 399 WNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMK 458

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           + + +    +HYACM++LLGR+  +++A++LI+++P + ++++W  LLS C    ++   
Sbjct: 459 SKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLA 518

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           E+AA+ L +LEP +AGPYI+LSN+YA+  RW+DVA +R +M+++NV K    SWIE+DNK
Sbjct: 519 EIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNK 578

Query: 572 VHKFV-SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           VH F      +HPE E+I ++L KL   L+EAG+ P+   V+HD  EE+KV S+ +HSEK
Sbjct: 579 VHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEK 638

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           +A+AY L+K P G  PIR+MKN+RVCGDCH  +K  + + GR IILRD+NRFHHF  G C
Sbjct: 639 MAVAYGLLKVPVG-KPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLC 697

Query: 691 SCKDNW 696
           SC+D W
Sbjct: 698 SCRDFW 703



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 159/327 (48%), Gaps = 38/327 (11%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           +A+ G+ID+AR +FD + ++ + SWN +++GY  N +P +   LF +M      P+  T+
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PERNTI 79

Query: 261 S--NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           S   ++    + G I +A ++F  + E++ V WT+M+ GY Q G  ++A +LF  M    
Sbjct: 80  SWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM---- 135

Query: 319 VRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDD 376
             P+K    +VVS    L  L   G+V   + +   +   D++ S+ +I   C  G   +
Sbjct: 136 --PEK----NVVSWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSE 189

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ MP RNVV+W SMI+GYA N +   A  L++ +  +N      T+ ++L     
Sbjct: 190 AREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKN----EVTWTAMLKGYTR 245

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
           +         F ++       P     AC  MI   G + +V KA  +   +  K +   
Sbjct: 246 SGRINEAAELFKAM-------PVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDG-T 297

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFEL 521
           WS L+ +   KG     E+ A  LF L
Sbjct: 298 WSALIKIYERKG----FELEALALFSL 320



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 22/218 (10%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           ++   I  + + G  D A  +F+ + ++ V SWN+++ GY  N +  EA  L+DK+ + N
Sbjct: 18  ITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERN 77

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
               + ++  ++S  +   +    +  FD +   + ++     +  M+    +   +D+A
Sbjct: 78  ----TISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSMVRGYVQEGLIDEA 128

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEPINAGPYIMLSNMYAA 538
             L   +P K N + W+ +L      G I+ G +  AR LF++ P+     +  +NM   
Sbjct: 129 ELLFWRMPEK-NVVSWTVMLG-----GLIEDGRVDEARRLFDMIPVK--DVVASTNMIGG 180

Query: 539 C---GRWEDVASIRSSMKSKNVKKFAAY-SWIEIDNKV 572
               GR  +   I   M  +NV  + +  S   ++NKV
Sbjct: 181 LCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKV 218


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/679 (37%), Positives = 407/679 (59%), Gaps = 47/679 (6%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           + Y+ L+  C  +  +    ++QSH +   F+      L N+L+  Y K G + YAR +F
Sbjct: 79  QLYSSLIQQCIGIKSITDITKIQSHALKRGFHHS----LGNKLIDAYLKCGSVVYARKVF 134

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D++P R I++WN++++++ R+G                                S+EA+ 
Sbjct: 135 DEVPHRHIVAWNSMIASYIRNGR-------------------------------SKEAID 163

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMY 201
           ++ RM  D   P ++T  S   A + L  +  G++ HG+ VV  +G  NVFV +AL DMY
Sbjct: 164 IYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMY 223

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK G++  AR + D++  +++V +  +I GY  +G+  + + +F+ M   G+  +E T+S
Sbjct: 224 AKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLS 283

Query: 262 NILGACFQTGRIDD--AGRLFH--VIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           ++L  C   G ++D  +GRL H  ++K   +  V WT++IVG  QNG+EE AL+ F +ML
Sbjct: 284 SVLVCC---GNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQML 340

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              + P+ F++SSV+ +C+ LA L  G+ +H   +  G+D D  V +ALID Y KCG T+
Sbjct: 341 RSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTE 400

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A +VFN +   +VVS NSMI  YAQNG   EAL L+  +    L+P++ T++ VLSAC 
Sbjct: 401 IARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACN 460

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           +A L E G + F S      I  + DHYACM++LLGR+  + +A  LI  + +  + +IW
Sbjct: 461 NAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQV-NISDVVIW 519

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            TLLS C + GD++  +     + +L P + G +++LSN+YA+ G W  V  ++S+M+  
Sbjct: 520 RTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREM 579

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            +KK  A SW++++ ++H F++ D +HP    I E+L +LI+K++E G+ P+T+ VL D 
Sbjct: 580 RLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDL 639

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
            EE+K++S+ YHSEKLA+A+ L +  +  T IRI+KN+RVCGDCH +MKF S I+GR II
Sbjct: 640 DEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDII 699

Query: 676 LRDSNRFHHFVGGNCSCKD 694
            RD  RFHHF  G CSC D
Sbjct: 700 ARDVKRFHHFRNGLCSCGD 718


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/666 (37%), Positives = 389/666 (58%), Gaps = 44/666 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G+L +A  L  ++   DII   AL++ +AR   ++  R  FD+M  +  V++N  IAG
Sbjct: 75  KQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAG 134

Query: 131 FANKGFSREALQVFSRM---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           ++  G  R AL+++  M     +  +P   T  SAL AC  + D+ +G++I  + V    
Sbjct: 135 YSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGY 194

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +  V+NAL +MY+K G ++ AR +FDR+ NR++++WN MISGY K G   + ++LFQ 
Sbjct: 195 ASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQR 254

Query: 248 MQLLGLNPDEVTVSNILGAC-----FQTGR------------------------------ 272
           M      P+ VT   +L AC      + GR                              
Sbjct: 255 MGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSS 314

Query: 273 -IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            +++A ++F  ++ +D + W  +IV Y Q G+ +DAL +F +M  E+V P++ ++S+V+S
Sbjct: 315 SLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLS 374

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA L +   G+ VH          D+++ ++L++MY +CG  DD   VF  +  +++VS
Sbjct: 375 ACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVS 434

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W+++I  YAQ+G     L  + +LLQE L  D  T VS LSAC H  + + G   F S+ 
Sbjct: 435 WSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMV 494

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             HG+ P   H+ CM++LL R+  ++ A +LI  +P  P+++ W++LLS C +  D K  
Sbjct: 495 GDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRA 554

Query: 512 EMAARHLFELEPINAGPYI-MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
              A  LFELE  +    + +LSN+YA  GRW+DV   R +   +  +K    S+IEI++
Sbjct: 555 ARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDV---RKTRNRRAARKNPGCSYIEIND 611

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH+FV+ D++HPE E+I  E+ +L K++++AG+ P+ ++VLH+ +EEEK + +CYHSEK
Sbjct: 612 TVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEK 671

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY LI  P G TP+ I+KN+R C DCH   KF S I+GR I++RDS RFHHF  G+C
Sbjct: 672 LAIAYGLISTPPG-TPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSC 730

Query: 691 SCKDNW 696
           SCKD W
Sbjct: 731 SCKDYW 736



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/487 (29%), Positives = 236/487 (48%), Gaps = 61/487 (12%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           + + GSV D  A+F  +   +SVS+   +A FA  G  REAL  + RM  +   P     
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           V A+  C+   DL++G+ +H  I+    L  ++ +  AL  MYA+  +++ AR  FD M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEM---QLLGLNPDEVTVSNILGACF------- 268
            + LV+WN +I+GY +NG  +  + ++Q+M      G+ PD +T S+ L AC        
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 269 ----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G ++ A ++F  +K +D + W TMI GY +
Sbjct: 182 GREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAK 241

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G    AL LF  M   D +P+  +   ++++C  L  L  G+ +H K    G + DL++
Sbjct: 242 QGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301

Query: 361 SSALIDMYCKCGVT-DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
            + L++MY KC  + ++A  VF  M TR+V++WN +I  Y Q GQ  +AL ++ ++  EN
Sbjct: 302 GNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLEN 361

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMINLLGRS 473
           + P+  T  +VLSAC       +G+       AVH +  S    A       ++N+  R 
Sbjct: 362 VAPNEITLSNVLSACAVLGAKRQGK-------AVHALIASGRCKADVVLENSLMNMYNRC 414

Query: 474 SDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
             +D  V +  ++  K  SL+ WSTL++  A  G   H      H +EL  E + A    
Sbjct: 415 GSLDDTVGVFAAIRDK--SLVSWSTLIAAYAQHG---HSRTGLEHFWELLQEGLAADDVT 469

Query: 531 MLSNMYA 537
           M+S + A
Sbjct: 470 MVSTLSA 476



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/445 (25%), Positives = 210/445 (47%), Gaps = 71/445 (15%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++  +  CT V D+   + +++    + Y  ++  + N L++ Y+K G L  AR +FD++
Sbjct: 166 FSSALYACTVVGDISQGREIEARTVASGYASDS-IVQNALINMYSKCGSLESARKVFDRL 224

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             RD+I+WN ++S +A+ G+                               + +AL++F 
Sbjct: 225 KNRDVIAWNTMISGYAKQGA-------------------------------ATQALELFQ 253

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-G 204
           RM  +  +P   T +  L AC  L DL +G+ IH K+       ++ + N L +MY K  
Sbjct: 254 RMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCS 313

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
             +++AR +F+RM  R++++WN++I  Y++ GQ K  +D+F++MQL  + P+E+T+SN+L
Sbjct: 314 SSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVL 373

Query: 265 GACF-----------------------------------QTGRIDDAGRLFHVIKEKDNV 289
            AC                                    + G +DD   +F  I++K  V
Sbjct: 374 SACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLV 433

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGK 348
            W+T+I  Y Q+G     L  F E+L E +  D  ++ S +S+C+    L  G Q     
Sbjct: 434 SWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSM 493

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLE 407
               G+  D      ++D+  + G  + A  + + MP   + V+W S+++G   +     
Sbjct: 494 VGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKR 553

Query: 408 ALALYDKLLQENLKPDSFTFVSVLS 432
           A  + DKL +     D  + V++LS
Sbjct: 554 AARVADKLFELE-SEDEHSTVTLLS 577



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 199/435 (45%), Gaps = 80/435 (18%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K G +  A  +F  + + N VSW L+++ + +NG  ++ +  ++ M L GL PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 260 VSNILGACFQTGRIDDAGRLFHV------------------------------------- 282
               +G C  +  +   G+L H                                      
Sbjct: 61  FVVAIGVCSSSKDLKQ-GQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS---EDVRPDKFSISSVVSSCAKLASL 339
           + +K  V W  +I GY++NG    AL ++ +M+S   E ++PD  + SS + +C  +  +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +  + V  G   D +V +ALI+MY KCG  + A  VF+ +  R+V++WN+MI+GY
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG--------QNHFDSIS 451
           A+ G   +AL L+ ++   + KP+  TF+ +L+AC + +  E+G        ++ ++S  
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 452 AVHGI--------TPSLDHYACMINLLGRSSDV----------------DKAVDLIKSLP 487
            +  +        + SL+    +   + R+ DV                  A+D+ K + 
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERM-RTRDVITWNILIVAYVQYGQAKDALDIFKQMQ 358

Query: 488 HK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRW 542
            +   PN +  S +LS CA+ G  + G+ A   L       A   +   L NMY  CG  
Sbjct: 359 LENVAPNEITLSNVLSACAVLGAKRQGK-AVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 543 EDVASIRSSMKSKNV 557
           +D   + ++++ K++
Sbjct: 418 DDTVGVFAAIRDKSL 432


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/634 (39%), Positives = 368/634 (58%), Gaps = 44/634 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L  Y ++G++  AR LF+     D+ISWNAL+S + + G + + R LFD+MP RD V
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVV 100

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  ++G+A +G   EA ++F                      A + D           
Sbjct: 101 SWNIMVSGYARRGDMVEARRLFD--------------------AAPVRD----------- 129

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                   VF   A+   YA+ G +++AR +FD M  RN VSWN M++ Y++     +  
Sbjct: 130 --------VFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAK 181

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           +LF  M    +     + + +L    Q G +++A  +F  + +KD V W  M+  Y+Q G
Sbjct: 182 ELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGG 237

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             E+ L LF EM       ++ + + V+S+CA +A+L  G  +HG+ +  G      V +
Sbjct: 238 CSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN 297

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+ MY KCG  +DA   F  M  R+VVSWN+MI GYA++G   EAL ++D +   + KP
Sbjct: 298 ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKP 357

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D  T V VL+AC H+ L E+G ++F S+    G+T   +HY CMI+LLGR+  + +A DL
Sbjct: 358 DDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDL 417

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           +K +P +P+S +W  LL    +  + + G  AA  +FELEP NAG Y++LSN+YA+ G+W
Sbjct: 418 MKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKW 477

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
            D   +R  M+ + VKK   +SWIE+ NKVH F + D  HPE E IY  L  L  ++++A
Sbjct: 478 RDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKA 537

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+   T +VLHD +EEEK   + YHSEKLA+AY ++  P G  PIR++KN+RVCGDCH  
Sbjct: 538 GYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPG-RPIRVIKNLRVCGDCHNA 596

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            K+ S I GR I+LRDSNRFHHF GG+CSC D W
Sbjct: 597 FKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+     A+  ++  C  +  +E   +L   +    Y     F+ N LL  Y K G +  
Sbjct: 253 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGC-FVGNALLAMYFKCGNMED 311

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR+ F++M  RD++SWN +++ +AR                                GF 
Sbjct: 312 ARNAFEEMEERDVVSWNTMIAGYAR-------------------------------HGFG 340

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
           +EAL++F  M+    +P D T V  L AC+ 
Sbjct: 341 KEALEIFDMMRTTSTKPDDITLVGVLAACSH 371


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 256/659 (38%), Positives = 377/659 (57%), Gaps = 45/659 (6%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           V L+K + SH   + +  N     N+L+  Y + G +  A  +F+ M ++  ++WN++L+
Sbjct: 21  VTLSKYVSSHTHQHEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILA 80

Query: 99  AHAR-SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
           A A+  G  +  R LF+K+P  ++VSYN  +A   +     +A   F  M          
Sbjct: 81  AFAKKPGHFEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLK------- 133

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
                                           +V   N +    A+ G + +AR LF  M
Sbjct: 134 --------------------------------DVASWNTMISALAQVGLMGEARRLFSAM 161

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
             +N VSW+ M+SGY+  G     ++ F    +  +    +T + ++    + GR++ A 
Sbjct: 162 PEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSV----ITWTAMITGYMKFGRVELAE 217

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           RLF  +  +  V W  MI GY +NG+ ED L LF  ML   V+P+  S++SV+  C+ L+
Sbjct: 218 RLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLS 277

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ VH       +  D    ++L+ MY KCG   DAW +F  +P ++VV WN+MI+
Sbjct: 278 ALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMIS 337

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           GYAQ+G   +AL L+D++ +E LKPD  TFV+VL AC HA L + G  +F+++    GI 
Sbjct: 338 GYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIE 397

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
              +HYACM++LLGR+  + +AVDLIKS+P KP+  I+ TLL  C +  ++   E AA++
Sbjct: 398 TKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKN 457

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           L EL+P  A  Y+ L+N+YAA  RW+ VASIR SMK  NV K   YSWIEI++ VH F S
Sbjct: 458 LLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRS 517

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL 637
            DR HPE   I+E+L  L KK++ AG+ P+ + VLHD  EE K + + +HSEKLA+A+ L
Sbjct: 518 SDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGL 577

Query: 638 IKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K P GV PIR+ KN+RVCGDCH   K+ S I GR II+RD+ RFHHF  G CSC+D W
Sbjct: 578 LKVPLGV-PIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 179/399 (44%), Gaps = 48/399 (12%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A  +L+    R  D++ A R+   M +     +T   ++ L  F  K G   YAR LF+K
Sbjct: 43  ASNKLIASYVRCGDIDSAVRVFEDMKVK----STVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +P  + +S+N +L+ H     V D R  FD MP++D  S+NT I+  A  G   EA ++F
Sbjct: 99  IPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLF 158

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           S M +          VS   AC  L           +        +V    A+   Y K 
Sbjct: 159 SAMPEKNCVSWS-AMVSGYVACGDL-------DAAVECFYAAPMRSVITWTAMITGYMKF 210

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ++ A  LF  M+ R LV+WN MI+GY++NG+ +  + LF+ M   G+ P+ ++++++L
Sbjct: 211 GRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVL 270

Query: 265 GAC-----FQTGR------------------------------IDDAGRLFHVIKEKDNV 289
             C      Q G+                              + DA  LF  I  KD V
Sbjct: 271 LGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVV 330

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGK 348
           CW  MI GY Q+G  + AL LF+EM  E ++PD  +  +V+ +C     +  G Q  +  
Sbjct: 331 CWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTM 390

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
               G++      + ++D+  + G   +A  +   MP +
Sbjct: 391 RRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFK 429



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           T+   G      + T ++L C+ ++ ++L K++   +       +TT     L+  Y+K 
Sbjct: 253 TMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTT-AGTSLVSMYSKC 311

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAI 128
           G L  A +LF ++P +D++ WNA++S +A+ G+ +    LFD+M       D +++   +
Sbjct: 312 GDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVL 371

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
               + G     +Q F+ M++D    T   H     AC   L  R GK
Sbjct: 372 LACNHAGLVDLGVQYFNTMRRDFGIETKPEHY----ACMVDLLGRAGK 415


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/644 (38%), Positives = 368/644 (57%), Gaps = 35/644 (5%)

Query: 87   LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            + D+   NAL+  +A+ GS+ D R +FD M  RD +S+N  + G A  G   EA  VF +
Sbjct: 455  ISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQ 514

Query: 147  MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
            MQ++   P   T++S LN       L    ++H   V   L  +  V +A   MY + G 
Sbjct: 515  MQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGS 574

Query: 207  IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            ID AR LFD+++ R++ +WN MI G  +    ++ + LF +MQ  G  PD  T  NIL A
Sbjct: 575  IDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634

Query: 267  CF----------------------------------QTGRIDDAGRLFHVIKEKDNVCWT 292
                                                + G +  A ++F  + E++   WT
Sbjct: 635  NVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694

Query: 293  TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
             MI G  Q+G   DA   F +ML E + PD  +  S++S+CA   +L   + VH  AV  
Sbjct: 695  MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA 754

Query: 353  GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            G+  DL V +AL+ MY KCG  DDA +VF+ M  R+V SW  MI G AQ+G+ LEAL  +
Sbjct: 755  GLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFF 814

Query: 413  DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
             K+  E  KP+ +++V+VL+AC HA L + G+  F S++  +GI P+++HY CM++LLGR
Sbjct: 815  VKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGR 874

Query: 473  SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
            +  +++A   I ++P +P+   W  LL  C   G+++  E AA+   +L+P +A  Y++L
Sbjct: 875  AGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 934

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
            SN+YAA G+WE    +RS M+ K ++K    SWIE+DN++H FV  D +HPE++ IY +L
Sbjct: 935  SNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQL 994

Query: 593  SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            + LI++L+  G+ P+T+LVL +T +E K +++C HSEKLA+ Y L+       PIR+ KN
Sbjct: 995  NDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLM-HTQSKDPIRVYKN 1053

Query: 653  IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +RVC DCH   KF S I GR I+ RD+ RFHHF  G CSC D W
Sbjct: 1054 LRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 204/385 (52%), Gaps = 37/385 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  + R G +Q  R +FDK+  ++   + T I G+A  G + +A++V+ +M+++  +
Sbjct: 157 NKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQ 216

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P + T++S L AC   ++L+ GK+IH  I+      +V V  AL +MY K G I+ A+ +
Sbjct: 217 PNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLI 276

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA------- 266
           FD+M  RN++SW +MI G    G+ ++   LF +MQ  G  P+  T  +IL A       
Sbjct: 277 FDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGAL 336

Query: 267 ----------------------------CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         ++G IDDA  +F  + E+D   WT MI G 
Sbjct: 337 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGL 396

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVV--SSCAKLASLYHGQVVHGKAVVLGVDD 356
            Q+G+ ++A  LF +M      P+  +  S++  S+ A  ++L   +VVH  A   G   
Sbjct: 397 AQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFIS 456

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           DL + +ALI MY KCG  DDA  VF+ M  R+V+SWN+M+ G AQNG   EA  ++ ++ 
Sbjct: 457 DLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQ 516

Query: 417 QENLKPDSFTFVSVLSACLHADLFE 441
           QE L PDS T++S+L+     D  E
Sbjct: 517 QEGLVPDSTTYLSLLNTHGSTDALE 541



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 160/552 (28%), Positives = 258/552 (46%), Gaps = 85/552 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ + + GS++D + +FDKM  R+ +S+   I G A+ G  +EA  +F +MQ
Sbjct: 253 DVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQ 312

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F P  YT+VS LNA A    L   K++H   V   L  ++ V NAL  MYAK G ID
Sbjct: 313 REGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSID 372

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            AR +FD M  R++ SW +MI G  ++G+ ++   LF +MQ  G  P+  T  +IL A  
Sbjct: 373 DARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASA 432

Query: 268 ------------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
                                                + G IDDA  +F  + ++D + W
Sbjct: 433 IASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISW 492

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             M+ G  QNG   +A  +F +M  E + PD  +  S++++     +L     VH  AV 
Sbjct: 493 NAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVE 552

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+  D  V SA I MY +CG  DDA  +F+ +  R+V +WN+MI G AQ     EAL+L
Sbjct: 553 TGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSL 612

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISA-----------VHG---- 455
           + ++ +E   PD+ TF+++LSA +  +  E  +  H  +  A           VH     
Sbjct: 613 FLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKC 672

Query: 456 -------------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLL 499
                        +  ++  +  MI  L +      A      +  +   P++  + ++L
Sbjct: 673 GNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSIL 732

Query: 500 SVCAMKG------DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           S CA  G      ++ +  ++A  + +L   NA     L +MYA CG  +D  S+   M 
Sbjct: 733 SACASTGALEWVKEVHNHAVSAGLVSDLRVGNA-----LVHMYAKCGSIDDARSVFDDMV 787

Query: 554 SKNVKKFAAYSW 565
            ++V     +SW
Sbjct: 788 ERDV-----FSW 794



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 160/312 (51%), Gaps = 35/312 (11%)

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +++V+ L  C +  D+   KQ+H  I+   +  N++V N L  +Y + G +  AR +FD+
Sbjct: 119 FSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDK 178

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------- 267
           +  +N+  W  MI GY + G  +  + ++ +M+     P+E+T  +IL AC         
Sbjct: 179 LLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWG 238

Query: 268 -----------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                      FQ+               G I+DA  +F  + E++ + WT MI G    
Sbjct: 239 KKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHY 298

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+ ++A  LF +M  E   P+ ++  S++++ A   +L   + VH  AV  G+  DL V 
Sbjct: 299 GRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG 358

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+ MY K G  DDA  VF+ M  R++ SW  MI G AQ+G+  EA +L+ ++ +    
Sbjct: 359 NALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCL 418

Query: 422 PDSFTFVSVLSA 433
           P+  T++S+L+A
Sbjct: 419 PNLTTYLSILNA 430



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 176/411 (42%), Gaps = 83/411 (20%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
            +H Y + G +  AR LFDK+ +R + +WNA+                            
Sbjct: 565 FIHMYIRCGSIDDARLLFDKLSVRHVTTWNAM---------------------------- 596

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I G A +   REAL +F +MQ++ F P   T ++ L+A      L   K++H     
Sbjct: 597 ---IGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATD 653

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  ++ V NAL   Y+K G +  A+ +FD M  RN+ +W +MI G  ++G        
Sbjct: 654 AGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSH 712

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQT---------------------------------- 270
           F +M   G+ PD  T  +IL AC  T                                  
Sbjct: 713 FLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAK 772

Query: 271 -GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G IDDA  +F  + E+D   WT MI G  Q+G+  +AL  F +M SE  +P+ +S  +V
Sbjct: 773 CGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAV 832

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDA-WTVFN 382
           +++C+     + G V  G+   L +  D  +       + ++D+  + G+ ++A   + N
Sbjct: 833 LTACS-----HAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILN 887

Query: 383 MMPTRNVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLS 432
           M    +   W +++      G  ++   A  ++L    LKP S +   +LS
Sbjct: 888 MPIEPDDAPWGALLGACVTYGNLEMAEFAAKERL---KLKPKSASTYVLLS 935



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 137/256 (53%), Gaps = 4/256 (1%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G+  +    + +L    + GR+  A ++F  + +K+   WTTMI GY + G  EDA+ ++
Sbjct: 148 GMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVY 207

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           ++M  E  +P++ +  S++ +C    +L  G+ +H   +  G   D+ V +AL++MY KC
Sbjct: 208 DKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKC 267

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA  +F+ M  RNV+SW  MI G A  G+  EA  L+ ++ +E   P+S+T+VS+L
Sbjct: 268 GSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSIL 327

Query: 432 SACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +A   A   E  +  H  +++A  G+   L     ++++  +S  +D A  +   +  + 
Sbjct: 328 NANASAGALEWVKEVHSHAVNA--GLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER- 384

Query: 491 NSLIWSTLLSVCAMKG 506
           +   W+ ++   A  G
Sbjct: 385 DIFSWTVMIGGLAQHG 400



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 39/282 (13%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+H Y+K G + YA+ +FD M  R++ +W  +                          
Sbjct: 663 NALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMM-------------------------- 696

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                I G A  G   +A   F +M ++   P   T+VS L+ACA    L   K++H   
Sbjct: 697 -----IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHA 751

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V   L  ++ V NAL  MYAK G ID AR +FD M  R++ SW +MI G  ++G+  + +
Sbjct: 752 VSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEAL 811

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVG 297
           D F +M+  G  P+  +   +L AC   G +D+  R F  + +   +      +T M+  
Sbjct: 812 DFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDL 871

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
             + G  E+A +    +L+  + PD     +++ +C    +L
Sbjct: 872 LGRAGLLEEAELF---ILNMPIEPDDAPWGALLGACVTYGNL 910



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 120/252 (47%), Gaps = 13/252 (5%)

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           +DA+ +    + + +  D FS  +++  C K   +   + VH   +  G++ +L V++ L
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKL 159

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           + +Y +CG    A  VF+ +  +N+  W +MI GYA+ G   +A+ +YDK+ QE  +P+ 
Sbjct: 160 LRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNE 219

Query: 425 FTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
            T++S+L AC      + G+  H   I +  G    +     ++N+  +   ++ A  + 
Sbjct: 220 ITYLSILKACCCPVNLKWGKKIHAHIIQS--GFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-----ELEPINAGPYIMLSNMYAA 538
             +  + N + W+ ++   A  G  +     A HLF     E    N+  Y+ + N  A+
Sbjct: 278 DKMVER-NVISWTVMIGGLAHYGRGQE----AFHLFLQMQREGFIPNSYTYVSILNANAS 332

Query: 539 CGRWEDVASIRS 550
            G  E V  + S
Sbjct: 333 AGALEWVKEVHS 344



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 110/309 (35%), Gaps = 86/309 (27%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  ++  C     +E  K + +H  ++    +   + N L+H YAK G +  AR +FD M
Sbjct: 728 YVSILSACASTGALEWVKEVHNHA-VSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             RD+ SW  +                               I G A  G   EAL  F 
Sbjct: 787 VERDVFSWTVM-------------------------------IGGLAQHGRGLEALDFFV 815

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M+ + F+P  Y++V+ L AC+                                     G
Sbjct: 816 KMKSEGFKPNGYSYVAVLTACSH-----------------------------------AG 840

Query: 206 EIDKARWLFDRMNN-----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN----PD 256
            +D+ R  F  M         +  +  M+    + G       L +E +L  LN    PD
Sbjct: 841 LVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAG-------LLEEAELFILNMPIEPD 893

Query: 257 EVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
           +     +LGAC   G ++    A +    +K K    +  +   Y   GK E  L++ + 
Sbjct: 894 DAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSM 953

Query: 314 MLSEDVRPD 322
           M  + +R +
Sbjct: 954 MQRKGIRKE 962



 Score = 42.4 bits (98), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 55/263 (20%), Positives = 99/263 (37%), Gaps = 64/263 (24%)

Query: 389 VVSWNSMINGYAQNGQDL----EALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERG 443
           +V  N+ ++G A+   ++    +A+A+    +Q+ +  DSF++V++L  CL   D+    
Sbjct: 79  LVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAK 138

Query: 444 QNH----------------------------------FDSI--SAVHGITPSLDHYACMI 467
           Q H                                  FD +    ++  T  +  YA   
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYA--- 195

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINA 526
              G + D  +  D ++    +PN + + ++L  C    ++K G+    H+ +     + 
Sbjct: 196 -EYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDV 254

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW-IEIDNKVHKFVSEDRTHPET 585
                L NMY  CG  ED   I   M  +NV      SW + I    H    ++  H   
Sbjct: 255 RVETALVNMYVKCGSIEDAQLIFDKMVERNV-----ISWTVMIGGLAHYGRGQEAFH--- 306

Query: 586 EIIYEELSKLIKKLQEAGFSPNT 608
                    L  ++Q  GF PN+
Sbjct: 307 ---------LFLQMQREGFIPNS 320


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 236/622 (37%), Positives = 366/622 (58%), Gaps = 44/622 (7%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR + D+MP +D ++W  ++  + R G V   R++F+++  +  V +N  I+G+   G  
Sbjct: 220 ARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMC 279

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF----- 192
            +A ++F RM  ++    ++T  S L+ACA       GK +HG+I+   L  N       
Sbjct: 280 ADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQII--RLQPNFVPEAAL 337

Query: 193 -VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V NAL  +Y+KGG+I  A+ +FD MN +++VSWN ++SGY+ +G               
Sbjct: 338 PVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSG--------------- 382

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                          C     +D A  +F V+  K+++ W  M+ GY   G  EDAL LF
Sbjct: 383 ---------------C-----LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLF 422

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           N+M +EDV+P  ++ +  +++C +L +L HG+ +H   V  G +      +AL+ MY KC
Sbjct: 423 NQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 482

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA  VF +MP  + VSWN+MI+   Q+G   EAL L+D+++ E + PD  +F+++L
Sbjct: 483 GAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 542

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           +AC HA L + G ++F+S+    GI+P  DHYA +I+LLGRS  + +A DLIK++P +P 
Sbjct: 543 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 602

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
             IW  +LS C   GD++ G  AA  LF + P + G YI+LSN Y+A GRW D A +R  
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 662

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
           M+ + VKK    SWIE+ +K+H F+  D  HPE + +Y+ L  +  ++++ G+ P+TK V
Sbjct: 663 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 722

Query: 612 LHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
           LHD +  EK   +  HSEKLA+ + L+K P G T + ++KN+R+CGDCH  M F S  +G
Sbjct: 723 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT-VTVLKNLRICGDCHTAMMFMSKAVG 781

Query: 672 RTIILRDSNRFHHFVGGNCSCK 693
           R I++RD  RFHHF  G CSC+
Sbjct: 782 REIVVRDVRRFHHFKDGECSCE 803



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 139/241 (57%), Gaps = 4/241 (1%)

Query: 44  RLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS 103
           RLQ     NF       ++N L+  Y+K GK+  A+ +FD M L+D++SWN +LS +  S
Sbjct: 326 RLQP----NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDS 381

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           G +     +F  MP ++ +S+   ++G+ + G S +AL++F++M+ +  +P DYT+  A+
Sbjct: 382 GCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAI 441

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC +L  L+ G+Q+H  +V      +    NAL  MYAK G ++ AR +F  M N + V
Sbjct: 442 AACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSV 501

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SWN MIS   ++G  ++ ++LF +M   G++PD ++   IL AC   G +D+    F  +
Sbjct: 502 SWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESM 561

Query: 284 K 284
           K
Sbjct: 562 K 562



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 158/342 (46%), Gaps = 50/342 (14%)

Query: 261 SNILGACFQTGRIDDAGRLFHVIK--EKDNVCWTTMIVGYTQNGKEEDALILFNEML-SE 317
           ++++ A    GR+ DA   F  +    +D V    M+  + +      A+ +F+ +L S 
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 318 DVRPDKFSISSVVSSCAKLASLY--HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            +RPD +S ++++S+  ++ +L   H   +H   +  G    L VS+ALI +Y KC   +
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 376 DAW---TVFNMMP----------------------TRNV---------VSWNSMINGYAQ 401
            +W    V + MP                       R+V         V WN+MI+GY Q
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITP-- 458
           +G   +A  L+ +++ E +  D FTF SVLSAC +A  F  G++ H   I       P  
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARH 517
           +L     ++ L  +   +  A  +  ++  K + + W+T+LS     G I  G +  A  
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILS-----GYIDSGCLDKAVE 389

Query: 518 LFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           +F++ P  N   ++++ + Y   G  ED   + + M++++VK
Sbjct: 390 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVK 431


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 273/788 (34%), Positives = 426/788 (54%), Gaps = 129/788 (16%)

Query: 34  TRVNDVE----LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           T++N V     +A+ + +H+  + ++PNT F+ NRL++ Y KS  + YAR LFDK+P  D
Sbjct: 12  TQLNHVSTTQIIARAVHAHILTSGFKPNT-FILNRLINIYCKSSNITYARKLFDKIPKPD 70

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           I++   LLSA++ SG+V+  + LF+  P  IRD+VSYN  I  +++      AL +F +M
Sbjct: 71  IVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQM 130

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQ-IHGKIVVGNLGGNVF--VRNAL------- 197
           ++  F P  +T  S L+A + + D  R  Q +H +++   LG  +   V NAL       
Sbjct: 131 KRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVI--KLGTLLIPSVTNALLSCYVCC 188

Query: 198 --------------------------------TDM---YAKGGEIDKARWLFDRMNNRNL 222
                                           T M   Y +  ++  AR L D +     
Sbjct: 189 ASSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPID 248

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------FQTG-- 271
           V+WN MISGY++ G  ++  D F+ M  +G+  DE T ++++ AC         F  G  
Sbjct: 249 VAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQ 308

Query: 272 --------------------------------RIDDAGRLFHVIKEKDNVCW-------- 291
                                           R+ +A R+F  +  +D + W        
Sbjct: 309 VHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYV 368

Query: 292 -----------------------TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
                                  T MI G  QNG  E+ L LFN+M SE + P  ++ + 
Sbjct: 369 NAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAG 428

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
            +++C+ L SL +GQ +H + + LG D  L   +ALI MY +CGV + A +VF  MP  +
Sbjct: 429 AITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVD 488

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
            VSWN+MI   AQ+G  ++A+ L++++++E++ PD  TF+++L+AC HA L + G+++FD
Sbjct: 489 SVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFD 548

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           ++   +GITP  DHYA +I+LL R+    KA  +IKS+P +  + IW  LL+ C + G++
Sbjct: 549 TMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNM 608

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + G  AA  L EL P   G YI+LSNMYAA G+W++VA +R  M+ + VKK    SW+E+
Sbjct: 609 ELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEV 668

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
           +N VH F+ +D  HPE + +Y  L +L+ ++++ G+ P+TK VLHD + E K  S+  HS
Sbjct: 669 ENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHS 728

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           EKLA+ Y ++K P G T IR+ KN+R+CGDCH   K+ S ++ R I++RD  RFHHF  G
Sbjct: 729 EKLAVVYGIMKLPLGAT-IRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNG 787

Query: 689 NCSCKDNW 696
            CSC + W
Sbjct: 788 ECSCGNYW 795



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/282 (32%), Positives = 153/282 (54%), Gaps = 10/282 (3%)

Query: 9   QAIDT---LYSRGQAATEEAYTQLVLDCTRVND----VELAKRLQSHMDLNFYEPNTTFL 61
           +A DT   ++S G    E  YT L+  C   N+        +++  ++     EP+  F+
Sbjct: 266 EAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFV 325

Query: 62  ---HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
              +N L+ FY K  ++  AR +FDKMP+RDIISWNA+LS +  +  +++  ++F +MP 
Sbjct: 326 LSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPE 385

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R+ +++   I+G A  GF  E L++F++M+ +  EP DY    A+ AC+ L  L  G+QI
Sbjct: 386 RNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQI 445

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H +++       +   NAL  MY++ G ++ A  +F  M   + VSWN MI+   ++G  
Sbjct: 446 HSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHG 505

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
            K I+LF++M    + PD +T   IL AC   G I +    F
Sbjct: 506 VKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYF 547


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/650 (36%), Positives = 379/650 (58%), Gaps = 43/650 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ +++ G ++D R LFD M  RD V +N  + G+   G  +EA Q+FS   
Sbjct: 217 DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH 276

Query: 149 KDRFEPTDYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +    P +++    LN C  A   DL  GKQ+HG  V   L  +V V N+L +MY+K G 
Sbjct: 277 RSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGC 336

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV------ 260
              AR +F+ M + +L+SWN MIS   ++   ++ ++LF ++   GL PD  T+      
Sbjct: 337 AYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLA 396

Query: 261 ----------------------------------SNILGACFQTGRIDDAGRLFHVIKEK 286
                                             S IL    + G + +AG +F+ I   
Sbjct: 397 TAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAP 456

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D+V WT+MI G   NG E+ AL +++ M    V PD+++ ++++ + + + +L  G+ +H
Sbjct: 457 DDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH 516

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              + L    D  V ++L+DMY KCG  +DA+ +F  M  RN+  WN+M+ G AQ+G   
Sbjct: 517 ANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAE 576

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA+ L+  +    ++PD  +F+ +LSAC HA L      +  S+   +GI P ++HY+C+
Sbjct: 577 EAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 636

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++ LGR+  V +A  +I+++P K ++ I   LL  C ++GD++ G+  A  LF LEP ++
Sbjct: 637 VDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDS 696

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
             Y++LSN+YAA  RW+DV   R  MK KNVKK   +SWI++ N +H FV +DR+HP+ +
Sbjct: 697 AAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQAD 756

Query: 587 IIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
           IIY+++ +++K ++E G+ P+T+ VL D ++EEK +S+ YHSEKLA+AY LI  P   T 
Sbjct: 757 IIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP-ASTT 815

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IR++KN+RVCGDCH  +K+ S +  R I+LRD+NRFHHF  G CSC D W
Sbjct: 816 IRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/491 (28%), Positives = 231/491 (47%), Gaps = 72/491 (14%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL N LL  Y+K G L  AR +FD  P RD+++WNA+L A+A S                
Sbjct: 113 FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD-------------- 158

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                       +N G ++E L +F  ++      T  T    L  C     L   + +H
Sbjct: 159 ------------SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVH 206

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  +   L  +VFV  AL ++Y+K G +  AR LFD M  R++V WN+M+ GY++ G  K
Sbjct: 207 GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEK 266

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD------------------------ 275
           +   LF E    GL PDE +V  IL  C   G  DD                        
Sbjct: 267 EAFQLFSEFHRSGLRPDEFSVQLILNGCLWAG-TDDLELGKQVHGIAVKSGLDSDVSVAN 325

Query: 276 --------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                         A  +F+ +K  D + W +MI    Q+  EE+++ LF ++L E ++P
Sbjct: 326 SLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKP 385

Query: 322 DKFSISSVV-----SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           D F+++S+       +C  L  L  G+ +H  A+  G D DL V+S ++DMY KCG   +
Sbjct: 386 DHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVN 445

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  VFN +   + V+W SMI+G   NG + +AL +Y ++ Q  + PD +TF +++ A   
Sbjct: 446 AGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSC 505

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
               E+G+    ++  +  ++      + ++++  +  +++ A  L K +  + N  +W+
Sbjct: 506 VTALEQGRQLHANVIKLDCVSDPFVGTS-LVDMYAKCGNIEDAYRLFKKMNVR-NIALWN 563

Query: 497 TLLSVCAMKGD 507
            +L   A  G+
Sbjct: 564 AMLVGLAQHGN 574



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 220/474 (46%), Gaps = 83/474 (17%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +L  GK  H +IVV    G+ F+ N L  MY+K G +  AR +FD    R+LV+WN ++ 
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 231 GYL-----KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG-------------- 271
            Y       +G  ++ + LF+ ++    +   +T++ +L  C  +G              
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 211

Query: 272 ---------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                R+ DA  LF  ++E+D V W  M+ GY Q G E++A  L
Sbjct: 212 IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 271

Query: 311 FNEMLSEDVRPDKFSISSVVSSC--AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
           F+E     +RPD+FS+  +++ C  A    L  G+ VHG AV  G+D D+ V+++L++MY
Sbjct: 272 FSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY 331

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            K G    A  VFN M   +++SWNSMI+  AQ+  + E++ L+  LL E LKPD FT  
Sbjct: 332 SKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLA 391

Query: 429 SVL-----SACLHADLFERG-QNHFDSISA-----VHGITPSLDHY---------ACMIN 468
           S+       AC    L ++G Q H  +I A     +H  +  LD Y           + N
Sbjct: 392 SITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 451

Query: 469 LLGRSSDV---------------DKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKH 510
            +    DV               D+A+ +   +      P+   ++TL+   +    ++ 
Sbjct: 452 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 511

Query: 511 GEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           G     ++ +L+ + + P++   L +MYA CG  ED   +   M  +N+  + A
Sbjct: 512 GRQLHANVIKLDCV-SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNA 564



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 195/433 (45%), Gaps = 68/433 (15%)

Query: 15  YSRGQAATEEAYTQLVLD-C--TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           + R     +E   QL+L+ C     +D+EL K++      +  + + + + N L++ Y+K
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVS-VANSLVNMYSK 333

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            G  ++AR++F+ M   D+ISWN+++S+ A+S   ++   LF  +               
Sbjct: 334 MGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDL--------------- 378

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                      +   ++ D F     T  +A  AC  L+ L +GKQIH   +      ++
Sbjct: 379 -----------LHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDL 427

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V + + DMY K G++  A  +F+ ++  + V+W  MISG + NG   + + ++  M+  
Sbjct: 428 HVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQS 487

Query: 252 GLNPDEVTVSNILGA--CF---------------------------------QTGRIDDA 276
            + PDE T + ++ A  C                                  + G I+DA
Sbjct: 488 RVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDA 547

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC--A 334
            RLF  +  ++   W  M+VG  Q+G  E+A+ LF  M S  + PD+ S   ++S+C  A
Sbjct: 548 YRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHA 607

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            L S  + + +H      G++ ++   S L+D   + G+  +A  V   MP +   S N 
Sbjct: 608 GLTSEAY-EYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINR 666

Query: 395 MINGYAQNGQDLE 407
            + G  +   D+E
Sbjct: 667 ALLGACRIQGDVE 679


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/643 (37%), Positives = 375/643 (58%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +  A+++ +A+   ++D   +F++MP RD VS+NT +AG+A  GF+R A+QV  +MQ
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T VS L A A L  LR G+ IHG          V V  A+ D Y K G + 
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +F  M++RN+VSWN MI GY +NG+ ++    F +M   G+ P  V++   L AC 
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   R+D A  +F  +K K  V W  
Sbjct: 356 NLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNA 415

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+GY QNG   +AL LF EM S D++PD F++ SV+++ A L+     + +HG A+   
Sbjct: 416 MILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V +ALID + KCG    A  +F++M  R+V++WN+MI+GY  NG   EAL L++
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFN 535

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++   ++KP+  TF+SV++AC H+ L E G  +F+S+   +G+ P++DHY  M++LLGR+
Sbjct: 536 EMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRA 595

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D A   I+ +P KP   +   +L  C +  +++ GE  A  LF+L+P + G +++L+
Sbjct: 596 GRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLA 655

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA+   W+ VA +R++M+ K ++K    S +E+ N+VH F S    HP+++ IY  L 
Sbjct: 656 NMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLE 715

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  +++ AG+ P+T  + HD +E+ K + +  HSE+LA+A+ L+   HG T I I KN+
Sbjct: 716 TLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHG-TAIHIRKNL 773

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S + GR II+RD  RFHHF  G CSC D W
Sbjct: 774 RVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 159/571 (27%), Positives = 261/571 (45%), Gaps = 98/571 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           +++L    K+G  FY   LF             L+S   +  S+ +   +F+ +  +  V
Sbjct: 61  HQILPLIIKNG--FYNEHLFQ----------TKLISLFCKFNSITEAARVFEPVEHKLDV 108

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
            Y+T + G+A     R+A++ + RM+ D   P  Y     L    + LDLRRG++IHG +
Sbjct: 109 LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMV 168

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +      N+F   A+ ++YAK  +I+ A  +F+RM  R+LVSWN +++GY +NG  ++ +
Sbjct: 169 ITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            +  +MQ  G  PD +T+ ++L A                                    
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY 288

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           F+ G +  A  +F  +  ++ V W TMI GY QNG+ E+A   F +ML E V P   S+ 
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
             + +CA L  L  G+ VH       +  D+ V ++LI MY KC   D A +VF  +  +
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL-------- 439
            VV+WN+MI GYAQNG   EAL L+ ++   ++KPDSFT VSV++A   ADL        
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITAL--ADLSVTRQAKW 466

Query: 440 -----------------------------FERGQNHFDSISAVHGITPSLDHYACMINLL 470
                                         +  +  FD +   H IT     +  MI+  
Sbjct: 467 IHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGY 521

Query: 471 GRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEM---AARHLFELEPI 524
           G +    +A+DL   + +   KPN + + ++++ C+  G ++ G     + +  + LEP 
Sbjct: 522 GTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEP- 580

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
               Y  + ++    GR +D       M  K
Sbjct: 581 TMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/692 (35%), Positives = 403/692 (58%), Gaps = 47/692 (6%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-----SHMDLNFYEPNTTFLHNRLLHF 68
           ++S G          L   C  ++  ++ K++      S +D++       F+   + H 
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD------AFVQGSMFHM 160

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSY 124
           Y + G++  AR +FD+M  +D+++ +ALL A+AR G ++++  +  +M       + VS+
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++GF   G+ +EA+ +F ++    F P   T  S L +      L  G+ IHG ++ 
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V +A+ DMY K G +     LF++         N  I+G  +NG   K +++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F+  +       E T+                        E + V WT++I G  QNGK+
Sbjct: 341 FELFK-------EQTM------------------------ELNVVSWTSIIAGCAQNGKD 369

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +AL LF EM    V+P+  +I S++ +C  +A+L HG+  HG AV + + D++ V SAL
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KCG  + +  VFNMMPT+N+V WNS++NG++ +G+  E +++++ L++  LKPD 
Sbjct: 430 IDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDF 489

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            +F S+LSAC    L + G  +F  +S  +GI P L+HY+CM+NLLGR+  + +A DLIK
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+S +W  LL+ C ++ ++   E+AA  LF LEP N G Y++LSN+YAA G W +
Sbjct: 550 EMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTE 609

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           V SIR+ M+S  +KK    SWI++ N+V+  ++ D++HP+ + I E++ ++ K+++++G 
Sbjct: 610 VDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            PN    LHD +E+E+ + +  HSEKLA+ + L+  P G TP++++KN+R+CGDCH  +K
Sbjct: 670 RPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG-TPLQVIKNLRICGDCHAVIK 728

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S   GR I +RD+NRFHHF  G CSC D W
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 247/636 (38%), Positives = 382/636 (60%), Gaps = 15/636 (2%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           +N ++  +A  G +  AR  FD  P +D +SWN +L+A+ R+G +Q+ R LFD     D+
Sbjct: 203 YNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDA 262

Query: 122 VSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +S+N  +AG+  +    EA ++F++M Q+D       +  + ++  A+  D+   +++  
Sbjct: 263 ISWNALMAGYVQRSQIEEAQKMFNKMPQRDVV-----SWNTMVSGYARRGDMAEARRLFD 317

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
              + +    VF   A+   YA+ G +++A+ +FD M ++N VSWN M++ Y++    ++
Sbjct: 318 VAPIRD----VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEE 373

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
             +LF  M    +     + + +L    Q G +D+A  +F ++ +KD V W  M+  Y+Q
Sbjct: 374 AKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQ 429

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G  E+ L LF EM       ++ + + V+S+CA +A+L  G  +H + +  G      V
Sbjct: 430 IGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFV 489

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +AL+ MY KCG  ++A + F  M  R+VVSWN+MI GYA++G   EAL ++D + + + 
Sbjct: 490 GNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTST 549

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD  T V VL+AC H+ L E+G ++F S+    G+    +HY CMI+LLGR+  +D+AV
Sbjct: 550 KPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAV 609

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +L+K +P +P+S +W  LL    +  + + G  AA  +FELEP NAG Y++LSN+YA+ G
Sbjct: 610 NLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSG 669

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +W DV  +R  M  + VKK   +SWIE+ NKVH F   D  HPE E IY  L  L  +++
Sbjct: 670 KWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMK 729

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           +AG+   T +VLHD +EEEK   + YHSEKLA+AY ++K P G  PIR++KN+RVC DCH
Sbjct: 730 KAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPG-RPIRVIKNLRVCRDCH 788

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              K  S I GR IILRDSNRFHHF  G+CSC D W
Sbjct: 789 TAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 182/352 (51%), Gaps = 32/352 (9%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P  ++I  N  ++AH R+G V D   LF  MP R + +YNT +AG+A  G   +AL  F 
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 146 RMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            + + D F      H  AL   + L D+R    +  ++ V     +    N +   +A  
Sbjct: 163 SIPRPDSFSYNTLLH--ALGVSSSLADVR---ALFDEMPV----KDSVSYNVMISSHANH 213

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  AR  FD    ++ VSWN M++ Y++NG+ ++  +LF          D ++ + ++
Sbjct: 214 GLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEW----DAISWNALM 269

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP--D 322
               Q  +I++A ++F+ + ++D V W TM+ GY + G   +A  LF      DV P  D
Sbjct: 270 AGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF------DVAPIRD 323

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVF 381
            F+ +++VS  A+     +G +   K V   + D   VS +A++  Y +  + ++A  +F
Sbjct: 324 VFTWTAIVSGYAQ-----NGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELF 378

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           + MP RNV SWN+M+ GYAQ G   EA A++  + Q+    D+ ++ ++L+A
Sbjct: 379 DAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQK----DAVSWAAMLAA 426



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 167/365 (45%), Gaps = 34/365 (9%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L A A+    RR        + G     V  RN     + + G +  A  LF  M  R+ 
Sbjct: 79  LRAAARQRSHRRPPAPADACITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRST 138

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
            ++N M++GY  NG+  + +  F+ +      PD  + + +L A   +  + D   LF  
Sbjct: 139 STYNTMLAGYAANGRLPQALSFFRSIP----RPDSFSYNTLLHALGVSSSLADVRALFDE 194

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYH 341
           +  KD+V +  MI  +  +G    A   F      D+ P+K      VS    LA+ + +
Sbjct: 195 MPVKDSVSYNVMISSHANHGLVSLARHYF------DLAPEK----DAVSWNGMLAAYVRN 244

Query: 342 GQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           G++   + +     + D +  +AL+  Y +    ++A  +FN MP R+VVSWN+M++GYA
Sbjct: 245 GRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWNTMVSGYA 304

Query: 401 QNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           + G   EA  L+D      + P  D FT+ +++S      + E  +  FD++   + ++ 
Sbjct: 305 RRGDMAEARRLFD------VAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVS- 357

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
               +  M+    +   +++A +L  ++P + N   W+T+L+  A  G +      AR +
Sbjct: 358 ----WNAMMAAYVQRRMMEEAKELFDAMPCR-NVASWNTMLTGYAQAGMLDE----ARAI 408

Query: 519 FELEP 523
           F + P
Sbjct: 409 FGMMP 413



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 32/151 (21%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+     A+  ++  C  +  +E   +L S +    Y     F+ N LL  Y K G +  
Sbjct: 447 GEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGC-FVGNALLAMYFKCGSMEE 505

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A   F++M  RD++SWN +++ +AR                                GF 
Sbjct: 506 AHSAFEEMEERDVVSWNTMIAGYAR-------------------------------HGFG 534

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
           +EAL+VF  M+K   +P D T V  L AC+ 
Sbjct: 535 KEALEVFDTMRKTSTKPDDITLVGVLAACSH 565


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/642 (37%), Positives = 374/642 (58%), Gaps = 40/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N+L++ ++++G V      F   P  D +S+NT I+ +A      EA+  F  + +D  +
Sbjct: 933  NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLK 992

Query: 154  PTDYTHVSALNACAQLLD---LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
            P  +T  S L AC+   +      G Q+H   +   +  + FV  AL D+Y+KGG++D+A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 211  RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV---------- 260
             +L     + +L SWN ++ GY+K+ + +K ++ F  M  +G+  DE+T+          
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 261  -------------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                     S +L    + G + +A  LF  I   D V WTTMI
Sbjct: 1113 INLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 296  VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             GY +NG E+ AL +++ M    V+PD+++ ++++ + + L +L  G+ +H   V L   
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 356  DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
             D  V ++L+DMYCKCG   DA+ VF  M  R VV WN+M+ G AQ+G   EAL L+  +
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 416  LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
                ++PD  TF+ VLSAC H+ LF     +FD++   +GITP ++HY+C+++ LGR+  
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 476  VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
            + +A ++I S+P K ++ ++  LL  C  KGD +  +  A  L  L+P ++  Y++LSN+
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 536  YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
            YAA  +W+DV   R+ MK KNVKK   +SWI++ NKVH FV +DR+HP+  +IYE++  L
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 596  IKKLQEAG-FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            +K+++E G + P+T   L D +EEEK +++ YHSEKLA+A+ LI  P   T IR++KN+R
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSAT-IRVIKNLR 1531

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            VCGDCH  +K  S +  R I+LRD+NRFHHF  G CSC D W
Sbjct: 1532 VCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 209/458 (45%), Gaps = 47/458 (10%)

Query: 38   DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
            D++L KR  + +  +   P+  +L N L+  Y+K G L  AR +FDK   RD+++WN++L
Sbjct: 626  DLKLGKRAHARIVTSGDLPDR-YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 98   SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
            +A+A+                 DS SY   + GF          ++F  +++  F  T  
Sbjct: 685  AAYAQ---------------FADS-SYENVLEGF----------RLFGLLREFGFSITRL 718

Query: 158  THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
            T    L  C     ++  + +HG  V      ++FV  AL ++Y K G + +AR LFD+M
Sbjct: 719  TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKM 778

Query: 218  NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---FQTGRID 274
              R+ V WN+M+  Y++N    + +  F      G  PD   +  ++G         R  
Sbjct: 779  PERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKR 838

Query: 275  DAG-------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
             A        ++F   +  +   W   +  +   G+   A+  F  +L   +  D  ++ 
Sbjct: 839  HAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 328  SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
             ++S+      L  G+ +H   +       + VS++L++MY K GV   A   F   P  
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 388  NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            +++SWN+MI+ YAQN  ++EA+  +  LL++ LKPD FT  SVL AC   D  E    +F
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE----YF 1014

Query: 448  DSISAVH------GITPSLDHYACMINLLGRSSDVDKA 479
               S VH      GI         +I+L  +   +D+A
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 149/375 (39%), Gaps = 67/375 (17%)

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           + DL+ GK+ H +IV      + ++ N L  MY+K G +  AR +FD+ ++R+LV+WN +
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 229 ISGYLK--NGQPKKCIDLFQEMQLL----------------------------------- 251
           ++ Y +  +   +  ++ F+   LL                                   
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 252 ---GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
              G   D      ++    + G +  A  LF  + E+D V W  M+  Y +N  +++AL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
             F+        PD  ++  V+                      GV+ D+  +       
Sbjct: 804 RFFSAFHRSGFXPDFSNLHCVIG---------------------GVNSDVSNNRKRHAEQ 842

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            K      A  +F      N+ +WN  +  +   GQ + A+  +  LL+  +  DS T V
Sbjct: 843 VKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            +LSA + AD  + G+    ++       P +     ++N+  ++  V  A     + P 
Sbjct: 899 IILSAAVGADDLDLGE-QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP- 956

Query: 489 KPNSLIWSTLLSVCA 503
           + + + W+T++S  A
Sbjct: 957 ELDLISWNTMISSYA 971


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/642 (37%), Positives = 374/642 (58%), Gaps = 40/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N+L++ ++++G V      F   P  D +S+NT I+ +A      EA+  F  + +D  +
Sbjct: 933  NSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLK 992

Query: 154  PTDYTHVSALNACAQLLD---LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
            P  +T  S L AC+   +      G Q+H   +   +  + FV  AL D+Y+KGG++D+A
Sbjct: 993  PDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052

Query: 211  RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV---------- 260
             +L     + +L SWN ++ GY+K+ + +K ++ F  M  +G+  DE+T+          
Sbjct: 1053 EFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCL 1112

Query: 261  -------------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                     S +L    + G + +A  LF  I   D V WTTMI
Sbjct: 1113 INLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMI 1172

Query: 296  VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             GY +NG E+ AL +++ M    V+PD+++ ++++ + + L +L  G+ +H   V L   
Sbjct: 1173 SGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYS 1232

Query: 356  DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
             D  V ++L+DMYCKCG   DA+ VF  M  R VV WN+M+ G AQ+G   EAL L+  +
Sbjct: 1233 LDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTM 1292

Query: 416  LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
                ++PD  TF+ VLSAC H+ LF     +FD++   +GITP ++HY+C+++ LGR+  
Sbjct: 1293 QSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGR 1352

Query: 476  VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
            + +A ++I S+P K ++ ++  LL  C  KGD +  +  A  L  L+P ++  Y++LSN+
Sbjct: 1353 IQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNI 1412

Query: 536  YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
            YAA  +W+DV   R+ MK KNVKK   +SWI++ NKVH FV +DR+HP+  +IYE++  L
Sbjct: 1413 YAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDL 1472

Query: 596  IKKLQEAG-FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            +K+++E G + P+T   L D +EEEK +++ YHSEKLA+A+ LI  P   T IR++KN+R
Sbjct: 1473 MKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSAT-IRVIKNLR 1531

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            VCGDCH  +K  S +  R I+LRD+NRFHHF  G CSC D W
Sbjct: 1532 VCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 209/458 (45%), Gaps = 47/458 (10%)

Query: 38   DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
            D++L KR  + +  +   P+  +L N L+  Y+K G L  AR +FDK   RD+++WN++L
Sbjct: 626  DLKLGKRAHARIVTSGDLPDR-YLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSIL 684

Query: 98   SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
            +A+A+                 DS SY   + GF          ++F  +++  F  T  
Sbjct: 685  AAYAQ---------------FADS-SYENVLEGF----------RLFGLLREFGFSITRL 718

Query: 158  THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
            T    L  C     ++  + +HG  V      ++FV  AL ++Y K G + +AR LFD+M
Sbjct: 719  TLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKM 778

Query: 218  NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---FQTGRID 274
              R+ V WN+M+  Y++N    + +  F      G  PD   +  ++G         R  
Sbjct: 779  PERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKR 838

Query: 275  DAG-------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
             A        ++F   +  +   W   +  +   G+   A+  F  +L   +  D  ++ 
Sbjct: 839  HAEQVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 328  SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
             ++S+      L  G+ +H   +       + VS++L++MY K GV   A   F   P  
Sbjct: 899  IILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPEL 958

Query: 388  NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            +++SWN+MI+ YAQN  ++EA+  +  LL++ LKPD FT  SVL AC   D  E    +F
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE----YF 1014

Query: 448  DSISAVH------GITPSLDHYACMINLLGRSSDVDKA 479
               S VH      GI         +I+L  +   +D+A
Sbjct: 1015 TLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEA 1052



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/375 (20%), Positives = 149/375 (39%), Gaps = 67/375 (17%)

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           + DL+ GK+ H +IV      + ++ N L  MY+K G +  AR +FD+ ++R+LV+WN +
Sbjct: 624 MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 229 ISGYLK--NGQPKKCIDLFQEMQLL----------------------------------- 251
           ++ Y +  +   +  ++ F+   LL                                   
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 252 ---GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
              G   D      ++    + G +  A  LF  + E+D V W  M+  Y +N  +++AL
Sbjct: 744 VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
             F+        PD  ++  V+                      GV+ D+  +       
Sbjct: 804 RFFSAFHRSGFFPDFSNLHCVIG---------------------GVNSDVSNNRKRHAEQ 842

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            K      A  +F      N+ +WN  +  +   GQ + A+  +  LL+  +  DS T V
Sbjct: 843 VKA----YAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            +LSA + AD  + G+    ++       P +     ++N+  ++  V  A     + P 
Sbjct: 899 IILSAAVGADDLDLGE-QIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP- 956

Query: 489 KPNSLIWSTLLSVCA 503
           + + + W+T++S  A
Sbjct: 957 ELDLISWNTMISSYA 971


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 365/603 (60%), Gaps = 3/603 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A++  G     R +FD+   ++ V +N  I  + N     EAL +F  M    F P 
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT    L AC+ L +LR G Q+H  IV   L  N+F+ NAL  MY K G + +AR + D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
           +M  R++VSWN M++GY ++GQ    +++ +EM  L LN D  T++++      T    +
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  + +K+ + W  MI  Y  N    +A+ LF +M    ++PD  +I+S++ +C
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L+ G+ +H       +  +LL+ +AL+DMY KCG  ++A  VF+ M  R+VVSW 
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           SM++ Y ++GQ  +A+AL+ K+L     PDS  FVSVLSAC H  L ++G+++F  ++  
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +GI P ++H+ACM++L GR+ +V++A   IK +P +PN  +W  LLS C +   +  G +
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  LF+L P  +G Y++LSN+YA  G W+DV ++R +MK   +KK    S +E++ +VH
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D+ HP+ + IY EL  L+ K++E G+ P T+  LHD + E+K   +  HSEKLA+
Sbjct: 557 TFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAI 616

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            + ++    G TPIRI KN+RVCGDCH+ +K  S I+ R II+RD NRFHHF  G CSC 
Sbjct: 617 VFAILNTKQG-TPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCG 675

Query: 694 DNW 696
           D W
Sbjct: 676 DYW 678



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 179/372 (48%), Gaps = 64/372 (17%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG--------------- 104
           F+ N L+  Y K G L  AR + D+MP RD++SWN++++ +A+SG               
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 105 ----------------------SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
                                 +VQ +  +F++M  ++ +S+N  IA + N     EA+ 
Sbjct: 233 NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVS 292

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F +M++   +P   T  S L AC  L  L  G+++H  I  GNL  N+ + NAL DMYA
Sbjct: 293 LFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYA 352

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G +++AR +FD+M  R++VSW  M+S Y ++GQ    + LF +M   G NPD +   +
Sbjct: 353 KCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVS 412

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC  TG +D     F ++ E+  +      +  M+  + + G+ E+A     +M  E
Sbjct: 413 VLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPME 472

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA---------LIDMY 368
              P++    +++S+C           VH K  +  V  DLL   A         L ++Y
Sbjct: 473 ---PNERVWGALLSACR----------VHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIY 519

Query: 369 CKCGVTDDAWTV 380
            K G+  D   V
Sbjct: 520 AKAGMWKDVMNV 531



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 17/314 (5%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L  D      ++ A    G    A  +F    EK+ V +  MI  Y  N    +AL +F 
Sbjct: 67  LRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQ 126

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            MLS    PD ++   V+ +C+ L +L  G  VH   V +G+D +L + +AL+ MY KCG
Sbjct: 127 VMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCG 186

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              +A  V + MP R+VVSWNSM+ GYAQ+GQ  +AL +  ++   NL  D+ T  S+  
Sbjct: 187 CLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSP 246

Query: 433 ACLHADL--FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-- 488
              +  L   +   N F+ ++       +L  +  MI +   +S  ++AV L   +    
Sbjct: 247 VVCYTSLENVQYIHNMFERMT-----KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWE 543
            KP+++  ++LL  C   GD+    +  R    +E  N  P ++L N    MYA CG  E
Sbjct: 302 MKPDAVTIASLLPAC---GDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLE 358

Query: 544 DVASIRSSMKSKNV 557
           +   +   M+ ++V
Sbjct: 359 EARDVFDKMRLRDV 372



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 166/376 (44%), Gaps = 72/376 (19%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ + + G +++ R + D+MP RD VS+N+ +AG+A  G   +AL++   M      
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             D   +++L+       L   + IH                                 +
Sbjct: 236 -HDAGTMASLSPVVCYTSLENVQYIHN--------------------------------M 262

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F+RM  +NL+SWN+MI+ Y+ N  P + + LF +M+  G+ PD VT++++L AC      
Sbjct: 263 FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSAL 322

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A  +F  ++ +D V WT+M+  Y
Sbjct: 323 FLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAY 382

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDDD 357
            ++G+  DA+ LF +ML     PD  +  SV+S+C+    L  G+          G+   
Sbjct: 383 GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPR 442

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +   + ++D++ + G  ++A++    MP   N   W ++++    + +    L   D L 
Sbjct: 443 IEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLF 502

Query: 417 QENLKPDSFTFVSVLS 432
           Q  L P    +  +LS
Sbjct: 503 Q--LAPKQSGYYVLLS 516



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 74/130 (56%), Gaps = 10/130 (7%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C  ++ + L +RL  +++    +PN   L N LL  YAK G L  ARD+FDKM LR
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLQPNL-LLENALLDMYAKCGCLEEARDVFDKMRLR 370

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREALQ 142
           D++SW +++SA+ RSG   D  ALF KM      P  DS+++ + ++  ++ G   +   
Sbjct: 371 DVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP--DSIAFVSVLSACSHTGLLDQGRH 428

Query: 143 VFSRMQKDRF 152
            F RM  +++
Sbjct: 429 YF-RMMTEQY 437


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/643 (38%), Positives = 369/643 (57%), Gaps = 38/643 (5%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ + LLH Y + G    AR + D MP R ++ W+AL++AHA  G  +    L ++M  
Sbjct: 55  AFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRS 114

Query: 119 ----RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQLLDLR 173
                + +++N  ++G    G +R+A+    RM  + F P D T VS AL+A   + D+ 
Sbjct: 115 DGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLP-DATGVSCALSAVGDVGDVA 173

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q+HG +V      +  V  AL DMY K G  D+   +FD  ++ ++ S N +++G  
Sbjct: 174 VGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLS 233

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
           +N Q  + + LF+E    G+                               E + V WT+
Sbjct: 234 RNAQVSEALRLFREFVGRGI-------------------------------ELNVVSWTS 262

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++    QNG++ +A+ LF EM SE + P+  +I  V+ + A +A+L HG+  H  ++  G
Sbjct: 263 IVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKG 322

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+ V SAL+DMY KCG   DA  +F  MP RNVVSWN+MI GYA +G+   A+ L+ 
Sbjct: 323 FHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFR 382

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +     KPD  TF  VL AC  A   E G+++F+ +   HGI+P ++HYACM+ LLGR+
Sbjct: 383 SMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRA 442

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D A D+I  +P +P+  IW +LL  C + G++   E+AA +LF+LEP NAG Y++LS
Sbjct: 443 GKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLS 502

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+   W+ V  +R  MK+  +KK    SWIEI NKVH  ++ D +HP    I E+L 
Sbjct: 503 NIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLK 562

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  +++  GF+P+T  VLHD +E+EK   +  HSEKLA+A  LI   HG TP++++KN+
Sbjct: 563 HLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHG-TPLQVIKNL 621

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+CGDCH  MKF S    R I +RD+NRFHHF  G CSC D W
Sbjct: 622 RICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 34/197 (17%)

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           GV  D  V+S+L+  Y + G T DA +V + MP R VV W+++I  +A +G    A  L 
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           +++  + ++P+  T+  ++S                                  +N  GR
Sbjct: 110 ERMRSDGVEPNVITWNGLVSG---------------------------------LNRSGR 136

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIM 531
           + D   A+  +      P++   S  LS     GD+  GE    ++ +    ++A     
Sbjct: 137 ARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATA 196

Query: 532 LSNMYAACGRWEDVASI 548
           L +MY  CGR +++  +
Sbjct: 197 LIDMYGKCGRADEIVRV 213


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 365/603 (60%), Gaps = 3/603 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A++  G     R +FD+   ++ V +N  I  + N     EAL +F  M    F P 
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT    L AC+ L +LR G Q+H  IV   L  N+F+ NAL  MY K G + +AR + D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
           +M  R++VSWN M++GY ++GQ    +++ +EM  L LN D  T++++      T    +
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  + +K+ + W  MI  Y  N    +A+ LF +M    ++PD  +I+S++ +C
Sbjct: 257 QYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPAC 316

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L+ G+ +H       +  +LL+ +AL+DMY KCG  ++A  VF+ M  R+VVSW 
Sbjct: 317 GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWT 376

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           SM++ Y ++GQ  +A+AL+ K+L     PDS  FVSVLSAC H  L ++G+++F  ++  
Sbjct: 377 SMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQ 436

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +GI P ++H+ACM++L GR+ +V++A   IK +P +PN  +W  LLS C +   +  G +
Sbjct: 437 YGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLV 496

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  LF+L P  +G Y++LSN+YA  G W+DV ++R +MK   +KK    S +E++ +VH
Sbjct: 497 AADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVH 556

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D+ HP+ + IY EL  L+ K++E G+ P T+  LHD + E+K   +  HSEKLA+
Sbjct: 557 TFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEVEDKECHLAIHSEKLAI 616

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            + ++    G TPIRI KN+RVCGDCH+ +K  S I+ R II+RD NRFHHF  G CSC 
Sbjct: 617 VFAILNTKQG-TPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRDCNRFHHFSNGICSCG 675

Query: 694 DNW 696
           D W
Sbjct: 676 DYW 678



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 179/372 (48%), Gaps = 64/372 (17%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG--------------- 104
           F+ N L+  Y K G L  AR + D+MP RD++SWN++++ +A+SG               
Sbjct: 173 FIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSL 232

Query: 105 ----------------------SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
                                 +VQ +  +F++M  ++ +S+N  IA + N     EA+ 
Sbjct: 233 NLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVS 292

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F +M++   +P   T  S L AC  L  L  G+++H  I  GNL  N+ + NAL DMYA
Sbjct: 293 LFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYA 352

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G +++AR +FD+M  R++VSW  M+S Y ++GQ    + LF +M   G NPD +   +
Sbjct: 353 KCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVS 412

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC  TG +D     F ++ E+  +      +  M+  + + G+ E+A     +M  E
Sbjct: 413 VLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPME 472

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA---------LIDMY 368
              P++    +++S+C           VH K  +  V  DLL   A         L ++Y
Sbjct: 473 ---PNERVWGALLSACR----------VHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIY 519

Query: 369 CKCGVTDDAWTV 380
            K G+  D   V
Sbjct: 520 AKAGMWKDVMNV 531



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 17/314 (5%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L  D      ++ A    G    A  +F    EK+ V +  MI  Y  N    +AL +F 
Sbjct: 67  LRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQ 126

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            MLS    PD ++   V+ +C+ L +L  G  VH   V +G+D +L + +AL+ MY KCG
Sbjct: 127 VMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCG 186

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              +A  V + MP R+VVSWNSM+ GYAQ+GQ  +AL +  ++   NL  D+ T  S+  
Sbjct: 187 CLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSP 246

Query: 433 ACLHADL--FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-- 488
              +  L   +   N F+ ++       +L  +  MI +   +S  ++AV L   +    
Sbjct: 247 VVCYTSLENVQYIHNMFERMT-----KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECG 301

Query: 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWE 543
            KP+++  ++LL  C   GD+    +  R    +E  N  P ++L N    MYA CG  E
Sbjct: 302 MKPDAVTIASLLPAC---GDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLE 358

Query: 544 DVASIRSSMKSKNV 557
           +   +   M+ ++V
Sbjct: 359 EARDVFDKMRLRDV 372



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 166/376 (44%), Gaps = 72/376 (19%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ + + G +++ R + D+MP RD VS+N+ +AG+A  G   +AL++   M      
Sbjct: 176 NALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLN 235

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             D   +++L+       L   + IH                                 +
Sbjct: 236 -HDAGTMASLSPVVCYTSLENVQYIHN--------------------------------M 262

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F+RM  +NL+SWN+MI+ Y+ N  P + + LF +M+  G+ PD VT++++L AC      
Sbjct: 263 FERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSAL 322

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A  +F  ++ +D V WT+M+  Y
Sbjct: 323 FLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAY 382

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDDD 357
            ++G+  DA+ LF +ML     PD  +  SV+S+C+    L  G+          G+   
Sbjct: 383 GRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPR 442

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +   + ++D++ + G  ++A++    MP   N   W ++++    + +    L   D L 
Sbjct: 443 IEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLF 502

Query: 417 QENLKPDSFTFVSVLS 432
           Q  L P    +  +LS
Sbjct: 503 Q--LAPKQSGYYVLLS 516



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 10/132 (7%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
             L+  C  ++ + L +RL  +++     PN   L N LL  YAK G L  ARD+FDKM 
Sbjct: 310 ASLLPACGDLSALFLGRRLHKYIEKGNLRPNL-LLENALLDMYAKCGCLEEARDVFDKMR 368

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREA 140
           LRD++SW +++SA+ RSG   D  ALF KM      P  DS+++ + ++  ++ G   + 
Sbjct: 369 LRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNP--DSIAFVSVLSACSHTGLLDQG 426

Query: 141 LQVFSRMQKDRF 152
              F RM  +++
Sbjct: 427 RHYF-RMMTEQY 437


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 250/647 (38%), Positives = 380/647 (58%), Gaps = 45/647 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  + R G+V + R LFD+MP RD  S+N  I+G+   G ++EAL +     
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL----- 238

Query: 149 KDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            D     D  T VS L+AC +  D  RG  IH   +   L   +FV N L D+YA+ G +
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD----------- 256
              + +FDRM  R+L+SWN +I  Y  N QP + I LFQEM+L  + PD           
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 257 ------------------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCW 291
                                   ++T+ N +   + + G +D A  +F+ +  KD + W
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSE--DVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            T+I GY QNG   +A+ ++N M  E  ++  ++ +  SV+ +C++  +L  G  +HG+ 
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G+  D+ V ++L DMY KCG  DDA ++F  +P  N V WN++I  +  +G   +A+
Sbjct: 479 LKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAV 538

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L+ ++L E +KPD  TFV++LSAC H+ L + G+  F+ +   +GITPSL HY CM++L
Sbjct: 539 MLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDL 598

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
            GR+  ++ A++ IKS+P +P++ IW  LLS C + G++  G++A+ HLFE+EP + G +
Sbjct: 599 YGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYH 658

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LSNMYA+ G+WE V  IRS    K ++K   +S +E+DNKV  F + ++THP  E +Y
Sbjct: 659 VLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMY 718

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            EL+ L +KL+  G+ P+ + VL D +++EK   +  HSE+LA+A+ LI  P   T IRI
Sbjct: 719 RELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTP-AKTTIRI 777

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+RVCGDCH   KF S I  R II+RDSNRFHHF  G CSC D W
Sbjct: 778 FKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 140/509 (27%), Positives = 244/509 (47%), Gaps = 53/509 (10%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           +S K  +AR L     ++++     L++ +   G+V   R  FD +  RD  ++N  I+G
Sbjct: 68  QSAKCLHAR-LVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISG 126

Query: 131 FANKGFSREALQVFSR-MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           +   G+S E ++ FS  M     +P   T  S L AC  + D   G +IH   +      
Sbjct: 127 YGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMW 183

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V+V  +L  +Y + G +  AR LFD M  R++ SWN MISGY ++G  K+ + L   ++
Sbjct: 184 DVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR 243

Query: 250 LLGLNPDEVTVSNILGACFQT-----------------------------------GRID 274
            +    D VTV ++L AC +                                    G + 
Sbjct: 244 AM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLK 299

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           D  ++F  +  +D + W ++I  Y  N +   A++LF EM    ++PD  ++ S+ S  +
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILS 359

Query: 335 KLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           +L  +   + V G  +  G   +D+ + +A++ MY K G+ D A  VFN +P ++V+SWN
Sbjct: 360 QLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWN 419

Query: 394 SMINGYAQNGQDLEALALYDKLLQEN--LKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           ++I+GYAQNG   EA+ +Y+ + +E   +  +  T+VSVL AC  A    +G      + 
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLL 479

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +G+   +     + ++ G+   +D A+ L   +P + NS+ W+TL++     G   HG
Sbjct: 480 K-NGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHG---HG 534

Query: 512 EMAARHLFELEPINAGP-YIMLSNMYAAC 539
           E A     E+      P +I    + +AC
Sbjct: 535 EKAVMLFKEMLDEGVKPDHITFVTLLSAC 563



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 201/449 (44%), Gaps = 76/449 (16%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +L+  K +H ++VV N   NV +   L ++Y   G +  AR+ FD ++NR++ +WNLMIS
Sbjct: 66  NLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMIS 125

Query: 231 GYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGAC---------------------- 267
           GY + G   + I  F    L  GL PD  T  ++L AC                      
Sbjct: 126 GYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTDGNKIHCLALKFGFMWDV 185

Query: 268 ----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                      + G + +A  LF  +  +D   W  MI GY Q+G  ++AL      LS+
Sbjct: 186 YVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALT-----LSD 240

Query: 318 DVRP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
            +R  D  ++ S++S+C +      G  +H  ++  G++ +L VS+ LID+Y + G   D
Sbjct: 241 GLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKD 300

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS---- 432
              VF+ M  R+++SWNS+I  Y  N Q L A+ L+ ++    ++PD  T +S+ S    
Sbjct: 301 CQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQ 360

Query: 433 -----ACLHADLFERGQNHF--------------------DSISAVHGITPSLD--HYAC 465
                AC     F   +  F                    DS  AV    P+ D   +  
Sbjct: 361 LGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNT 420

Query: 466 MINLLGRSSDVDKAVDLIKSLPHK-----PNSLIWSTLLSVCAMKGDIKHG-EMAARHLF 519
           +I+   ++    +A+++   +  +      N   W ++L  C+  G ++ G ++  R L 
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLK 480

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASI 548
               ++      L++MY  CGR +D  S+
Sbjct: 481 NGLYLDVFVGTSLADMYGKCGRLDDALSL 509



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 196/425 (46%), Gaps = 73/425 (17%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
             L+  CT   D      + S+   +  E +  F+ N+L+  YA+ G L   + +FD+M 
Sbjct: 251 VSLLSACTEAGDFNRGVTIHSYSIKHGLE-SELFVSNKLIDLYAEFGSLKDCQKVFDRMY 309

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +RD+ISWN+++ A+             ++ P+R                    A+ +F  
Sbjct: 310 VRDLISWNSIIKAYE-----------LNEQPLR--------------------AILLFQE 338

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGG 205
           M+  R +P   T +S  +  +QL ++R  + + G  +  G    ++ + NA+  MYAK G
Sbjct: 339 MRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLG 398

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNI 263
            +D AR +F+ + N++++SWN +ISGY +NG   + I+++  M+  G  ++ ++ T  ++
Sbjct: 399 LVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSV 458

Query: 264 LGACFQT-----------------------------------GRIDDAGRLFHVIKEKDN 288
           L AC Q                                    GR+DDA  LF+ I   ++
Sbjct: 459 LPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNS 518

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHG 347
           V W T+I  +  +G  E A++LF EML E V+PD  +  +++S+C+    +  G+     
Sbjct: 519 VPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEM 578

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ-D 405
                G+   L     ++D+Y + G  + A      MP +   S W ++++    +G  D
Sbjct: 579 MQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVD 638

Query: 406 LEALA 410
           L  +A
Sbjct: 639 LGKIA 643


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/661 (36%), Positives = 384/661 (58%), Gaps = 37/661 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + GK+ +A  L     + + +   +L+  +++ G+V D   +F K+   D V+++  I G
Sbjct: 68  REGKVLHALALRSGCEIDEFLGC-SLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
              +G  +EA ++F  M++    P  +T  S ++    + DLR G+ IHG I       +
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESD 186

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
             V N L  MY K   ++    +F+ M N +LVSWN ++SG+  +    +   +F +M L
Sbjct: 187 NLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLL 246

Query: 251 LGLNPDEVTVSNILGAC----------------------------------FQTGR-IDD 275
            G  P+  T  ++L +C                                  +   R ++D
Sbjct: 247 EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLED 306

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           AG  F  +  +D   WT +I GY Q  + E A+  F +M  E ++P++++++S +S C+ 
Sbjct: 307 AGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSH 366

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +A+L +G+ +H  AV  G   D+ V SAL+D+Y KCG  + A  +F  + +R++VSWN++
Sbjct: 367 MATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTI 426

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I+GY+Q+GQ  +AL  +  +L E + PD  TF+ VLSAC    L E G+  FDS+S ++G
Sbjct: 427 ISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYG 486

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           I PS++HYACM+++LGR+   ++    I+ +   P SLIW T+L  C + G++  GE AA
Sbjct: 487 INPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAA 546

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           + LFE+EP+    YI+LSN++A+ GRW+DV +IR+ M S+ +KK    SW+E+D +VH F
Sbjct: 547 KKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVF 606

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           +S+D +HP+   IY +L KL + L   G+ P T++VLH+   +EK++ + YHSE+LAL++
Sbjct: 607 LSQDGSHPKIREIYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSF 666

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            L+   + V PIRI KN+R+C DCH FMK  SDI  + I++RD  RFHHF  G CSC+D 
Sbjct: 667 ALL-STNAVKPIRIFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDR 725

Query: 696 W 696
           W
Sbjct: 726 W 726



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 211/442 (47%), Gaps = 54/442 (12%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LF  MP ++ VS+N  + G+A  G  ++ L++F +M++   + + +T  + L  CA    
Sbjct: 7   LFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGS 66

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           LR GK +H   +      + F+  +L DMY+K G +  A  +F ++ N ++V+W+ MI+G
Sbjct: 67  LREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITG 126

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR------------------- 272
             + G  ++  +LF  M+  G  P++ T+S+++      G                    
Sbjct: 127 LDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESD 186

Query: 273 ----------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                           ++D  ++F  +   D V W  ++ G+  +        +F +ML 
Sbjct: 187 NLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLL 246

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           E  +P+ F+  SV+ SC+ L     G+ VH   +    DDD  V +AL+DMY K    +D
Sbjct: 247 EGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLED 306

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A   F+ +  R++ SW  +I+GYAQ  Q  +A+  + ++ +E +KP+ +T  S LS C H
Sbjct: 307 AGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSH 366

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHY------ACMINLLGRSSDVDKAVDLIKSLPHKP 490
               E G+        +H +     H+      + +++L G+   ++ A  + K L  + 
Sbjct: 367 MATLENGRQ-------LHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR- 418

Query: 491 NSLIWSTLLSVCAMKGDIKHGE 512
           + + W+T++S     G  +HG+
Sbjct: 419 DIVSWNTIIS-----GYSQHGQ 435



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 188/427 (44%), Gaps = 83/427 (19%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A  LF  M  +N VSWN +++GY + G  KK + LF +M+       + T+S +L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 267 CFQTG-----------------RID------------------DAGRLFHVIKEKDNVCW 291
           C  TG                  ID                  DA ++F  I+  D V W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + MI G  Q G  ++A  LF+ M  +  RP++F++SS+VS+   +  L +GQ +HG    
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G + D LVS+ LI MY K    +D   VF  M   ++VSWN++++G+  +        +
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 412 YDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSL 460
           + ++L E  KP+ FTF+SVL +C           +HA + +   +  D +      T  +
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVG-----TALV 295

Query: 461 DHYA------------------------CMINLLGRSSDVDKAVDLIKSLPH---KPNSL 493
           D YA                         +I+   ++   +KAV   + +     KPN  
Sbjct: 296 DMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEY 355

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM---LSNMYAACGRWEDVASIRS 550
             ++ LS C+    +++G     H   ++  + G   +   L ++Y  CG  E   +I  
Sbjct: 356 TLASCLSGCSHMATLENGRQL--HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFK 413

Query: 551 SMKSKNV 557
            + S+++
Sbjct: 414 GLISRDI 420



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 119/278 (42%), Gaps = 40/278 (14%)

Query: 13  TLYSRGQAATEEA------YTQLVLDCTRVNDVELAKRLQ--SHMDLNFYEPNTTFLHNR 64
           T+   G A T++A      + Q+  +  + N+  LA  L   SHM         T  + R
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHM--------ATLENGR 374

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
            LH  A     F            DI   +AL+  + + G ++   A+F  +  RD VS+
Sbjct: 375 QLHAVAVKAGHF-----------GDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSW 423

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV- 183
           NT I+G++  G   +AL+ F  M  +   P + T +  L+AC+ +  +  GK+    +  
Sbjct: 424 NTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSK 483

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
           +  +  ++     + D+  + G+ ++ +   + M   NL  ++L+    L   +    +D
Sbjct: 484 IYGINPSIEHYACMVDILGRAGKFNEVKIFIEEM---NLTPYSLIWETVLGACKLHGNVD 540

Query: 244 LFQEM--QLLGLNP----DEVTVSNILGACFQTGRIDD 275
             ++   +L  + P      + +SNI  +    GR DD
Sbjct: 541 FGEKAAKKLFEMEPMMDSSYILLSNIFAS---KGRWDD 575


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/632 (38%), Positives = 369/632 (58%), Gaps = 37/632 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL   A+ G++  AR LF+++P   ++SWNA+++ + ++G V + + LFD+MP R+++S+
Sbjct: 327 LLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISW 386

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              IAG+A  G S EAL +   + ++   P+  +  S+  AC+ +  L  G+Q+H   V 
Sbjct: 387 AGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVK 446

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                N +V NAL  MY K   ++  R +F+RM  ++ VSWN  I+  ++N         
Sbjct: 447 AGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNM------- 499

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                       ++DA  +F  +  +D V WTT+I  Y Q  + 
Sbjct: 500 ----------------------------LEDARHIFDNMLSRDVVSWTTIISAYAQAERG 531

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           ++A+  F  ML E  +P+   ++ ++S C  L S   GQ +H  A+  G+D +L+V++AL
Sbjct: 532 DEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANAL 591

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           + MY KCG  D    VF+ M  R++ +WN+ I G AQ+G   EA+ +Y+ +    + P+ 
Sbjct: 592 MSMYFKCGCADSH-KVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNE 650

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TFV +L+AC HA L + G   F S+S  +G+TP L+HYACM++LLGR+ DV  A   I 
Sbjct: 651 VTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIY 710

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+++IWS LL  C +  + + G  AA  LF  EP NAG Y+MLSN+Y++ G W +
Sbjct: 711 DMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVE 770

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA +R  MK + V K    SW++I NKVH FV+ D+ H + E I   L  L   L+  G+
Sbjct: 771 VAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGY 830

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T+ VLHD  EE+K  S+ YHSEKLA+AY L+  P G+ PI+IMKN+R+CGDCH F+K
Sbjct: 831 VPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGM-PIQIMKNLRICGDCHTFIK 889

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S +  R I +RD NRFHHF  G+CSC D W
Sbjct: 890 FVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 155/584 (26%), Positives = 254/584 (43%), Gaps = 95/584 (16%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T   N ++  Y ++G +  AR LFD MP RD+ SWN++++ +  S  + D   LF +MP 
Sbjct: 126 TVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQ 185

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R+ V++   I+G+       +   +F  M  +   P      S L+A   L DL   + +
Sbjct: 186 RNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVL 245

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAK-GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
              ++      +V +  ++ ++Y +    +D A   FD M  RN  +W+ MI+     G+
Sbjct: 246 RPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGR 305

Query: 238 PKKCIDLF----------QEMQLLGLN---------------PDEVTVS--NILGACFQT 270
               I ++          Q   L GL                PD + VS   ++    Q 
Sbjct: 306 IDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQN 365

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +D+A  LF  +  ++ + W  MI GY QNG+ E+AL L   +    + P   S++S  
Sbjct: 366 GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +C+ + +L  G+ VH  AV  G   +  V +ALI MY KC   +    VFN M  ++ V
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWNS I    QN    +A  ++D +L      D  ++ +++SA   A   ERG       
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNMLSR----DVVSWTTIISAYAQA---ERG------- 531

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGD 507
                                     D+AV+  K++ H   KPNS I + LLSVC   G 
Sbjct: 532 --------------------------DEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGS 565

Query: 508 IKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
            K G+    +A +H  + E I A     L +MY  CG   D   +  SM+ +++     +
Sbjct: 566 AKLGQQIHTVAIKHGMDSELIVANA---LMSMYFKCG-CADSHKVFDSMEERDI-----F 616

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +W       + F++    H     +  E  K+ + ++  G  PN
Sbjct: 617 TW-------NTFITGCAQHG----LGREAIKMYEHMESVGVLPN 649



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 129/500 (25%), Positives = 236/500 (47%), Gaps = 68/500 (13%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           H+  +   A+ G+L  AR++FD MP RDII+WN+++SA+  SG ++D R LFD +   + 
Sbjct: 36  HSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNV 95

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC-AQLLDLRRGKQIHG 180
            +    ++G+A  G   +A +VF  M +      +    +A+ +C  Q  D+   +++  
Sbjct: 96  RTATILLSGYARLGRVLDARRVFDGMPE-----RNTVAWNAMVSCYVQNGDITMARRLFD 150

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +       +V   N++   Y    ++  A  LF +M  RNLV+W +MISGY++  Q  K
Sbjct: 151 AMP----SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGK 206

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGA----------------CFQTG------------- 271
             D+F+ M   G +PD+   +++L A                  +TG             
Sbjct: 207 GWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILN 266

Query: 272 -------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                   +D A + F  + E++   W+TMI   +  G+ + A+ ++           + 
Sbjct: 267 VYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYG----------RD 316

Query: 325 SISSVVSSCAKLASLYH-GQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFN 382
            + S+ S  A L  L   G++   + +   + D ++VS +A+I  Y + G+ D+A  +F+
Sbjct: 317 PVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFD 376

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            MP RN +SW  MI GYAQNG+  EAL L   L +  + P   +  S   AC H    E 
Sbjct: 377 RMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALET 436

Query: 443 GQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G+    S++   G     + Y C  +I++ G+  +++    +   +  K +++ W++ ++
Sbjct: 437 GR-QVHSLAVKAGC--QFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK-DTVSWNSFIA 492

Query: 501 VCAMKGDIKHGEMAARHLFE 520
                  ++     ARH+F+
Sbjct: 493 ALVQNNMLED----ARHIFD 508



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 132/248 (53%), Gaps = 2/248 (0%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ +  +E  +++ S + +       +++ N L+  Y K   + Y R +F++M ++D +S
Sbjct: 428 CSHIGALETGRQVHS-LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVS 486

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+ ++A  ++  ++D R +FD M  RD VS+ T I+ +A      EA++ F  M  +  
Sbjct: 487 WNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHE 546

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P        L+ C  L   + G+QIH   +   +   + V NAL  MY K G  D  + 
Sbjct: 547 KPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK- 605

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD M  R++ +WN  I+G  ++G  ++ I +++ M+ +G+ P+EVT   +L AC   G 
Sbjct: 606 VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGL 665

Query: 273 IDDAGRLF 280
           +D+  + F
Sbjct: 666 VDEGWQFF 673



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 45/162 (27%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           SA I    + G   +A  VF+ MP R++++WNSMI+ Y  +G   +A  L+D +   N++
Sbjct: 37  SARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR 96

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
             +                                   L  YA     LGR  D  +  D
Sbjct: 97  TATIL---------------------------------LSGYA----RLGRVLDARRVFD 119

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
               +P + N++ W+ ++S     GDI      AR LF+  P
Sbjct: 120 ---GMPER-NTVAWNAMVSCYVQNGDIT----MARRLFDAMP 153


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/661 (37%), Positives = 383/661 (57%), Gaps = 37/661 (5%)

Query: 71   KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
            ++G++ ++  +     L + IS   L+  +++ G   D   +F ++   D VS++  I  
Sbjct: 347  RAGQIVHSLAIRIGCELDEFISC-CLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITC 405

Query: 131  FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
               KG SREA +VF RM+     P  +T  S ++A   L DL  G+ IH  +       +
Sbjct: 406  LDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYD 465

Query: 191  VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
              V NAL  MY K G +     +F+   NR+L+SWN ++SG+  N      + +F +M  
Sbjct: 466  NTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLA 525

Query: 251  LGLNPDEVTVSNILGACFQTGRID-----------------------------------D 275
             G NP+  T  +IL +C     +D                                   D
Sbjct: 526  EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLED 585

Query: 276  AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
            A  +F+ + ++D   WT ++ GY Q+G+ E A+  F +M  E V+P++F+++S +S C++
Sbjct: 586  AETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSR 645

Query: 336  LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
            +A+L  G+ +H  A+  G   D+ V+SAL+DMY KCG  +DA  VF+ + +R+ VSWN++
Sbjct: 646  IATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTI 705

Query: 396  INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
            I GY+Q+GQ  +AL  ++ +L E   PD  TF+ VLSAC H  L E G+ HF+S+S ++G
Sbjct: 706  ICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYG 765

Query: 456  ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
            ITP+++HYACM+++LGR+    +    I+ +    N LIW T+L  C M G+I+ GE AA
Sbjct: 766  ITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAA 825

Query: 516  RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
              LFELEP     YI+LSNM+AA G W+DV ++R+ M ++ VKK    SW+E++ +VH F
Sbjct: 826  MKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVF 885

Query: 576  VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
            +S D +HP+   I+ +L  L +KL   G++PNT  VLH+  + EK + + YHSE+LALA+
Sbjct: 886  LSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAF 945

Query: 636  CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
             L+      T IRI KN+R+CGDCH FMK  S+I  + +++RD N FHHF  G+CSC++ 
Sbjct: 946  ALLSTSTRKT-IRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNF 1004

Query: 696  W 696
            W
Sbjct: 1005 W 1005



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 145/537 (27%), Positives = 255/537 (47%), Gaps = 75/537 (13%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+L++ +A+ GS      +F ++P RD VS+   I GF  +G+   A+ +F  M+++  
Sbjct: 166 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV 225

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           E  ++T+ +AL AC+  LDL  GKQ+H + I VG+   ++FV +AL D+YAK GE+  A 
Sbjct: 226 EANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFS-DLFVGSALVDLYAKCGEMVLAE 284

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F  M  +N VSWN +++G+ + G  +K ++LF  M    +N  + T+S +L  C  +G
Sbjct: 285 RVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG 344

Query: 272 RI-----------------------------------DDAGRLFHVIKEKDNVCWTTMIV 296
            +                                    DA ++F  I++ D V W+ +I 
Sbjct: 345 NLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIIT 404

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              Q G+  +A  +F  M    V P++F+++S+VS+   L  LY+G+ +H      G + 
Sbjct: 405 CLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEY 464

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D  V +AL+ MY K G   D   VF     R+++SWN++++G+  N      L +++++L
Sbjct: 465 DNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQML 524

Query: 417 QENLKPDSFTFVSVLSAC-----------LHADLFER----------------GQNHF-D 448
            E   P+ +TF+S+L +C           +HA + +                  +N F +
Sbjct: 525 AEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLE 584

Query: 449 SISAVHGITPSLDHYACMINLLGRSSD--VDKAVDLIKSLPH---KPNSLIWSTLLSVCA 503
               +       D +A  + + G + D   +KAV     +     KPN    ++ LS C+
Sbjct: 585 DAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS 644

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLS---NMYAACGRWEDVASIRSSMKSKNV 557
               +  G     H   ++   +G   + S   +MYA CG  ED   +   + S++ 
Sbjct: 645 RIATLDSGRQL--HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 246/537 (45%), Gaps = 74/537 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+  +A+ G +     +F  MP +++VS+N  + GFA  G + + L +F RM 
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT 322

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                 + +T  + L  CA   +LR G+ +H   +      + F+   L DMY+K G   
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F R+ + ++VSW+ +I+   + GQ ++  ++F+ M+  G+ P++ T+++++ A  
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G + D  R+F     +D + W  
Sbjct: 443 DLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNA 502

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++ G+  N   +  L +FN+ML+E   P+ ++  S++ SC+ L+ +  G+ VH + V   
Sbjct: 503 LLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNS 562

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D +  V +AL+DMY K    +DA T+FN +  R++ +W  ++ GYAQ+GQ  +A+  + 
Sbjct: 563 LDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFI 622

Query: 414 KLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNH---------------- 446
           ++ +E +KP+ FT  S LS C           LH+   + GQ+                 
Sbjct: 623 QMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 682

Query: 447 --------FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
                   FD +  V   T S +   C  +  G+     KA + +      P+ + +  +
Sbjct: 683 CVEDAEVVFDGL--VSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGV 740

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAG--PYIMLSNMYAACGRWEDVASIRSSMK 553
           LS C+  G I+ G+     L ++  I      Y  + ++    G++ +V S    MK
Sbjct: 741 LSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK 797



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 35/306 (11%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  CA   DL  GK IHG+++   +  +  + N+L ++YAK G  + A  +F  +  R++
Sbjct: 135 LRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDV 194

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  +I+G++  G     ++LF EM+  G+  +E T +  L AC               
Sbjct: 195 VSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAE 254

Query: 268 -FQTGRIDD-------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
             + G   D                   A R+F  + +++ V W  ++ G+ Q G  E  
Sbjct: 255 AIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKV 314

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF  M   ++   KF++S+V+  CA   +L  GQ+VH  A+ +G + D  +S  L+DM
Sbjct: 315 LNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDM 374

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG+  DA  VF  +   +VVSW+++I    Q GQ  EA  ++ ++    + P+ FT 
Sbjct: 375 YSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTL 434

Query: 428 VSVLSA 433
            S++SA
Sbjct: 435 ASLVSA 440



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 132/261 (50%), Gaps = 14/261 (5%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G+NPD    ++++    + G  + A ++F  I E+D V WT +I G+   G    A+ LF
Sbjct: 158 GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLF 217

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            EM  E V  ++F+ ++ + +C+    L  G+ VH +A+ +G   DL V SAL+D+Y KC
Sbjct: 218 CEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC 277

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  VF  MP +N VSWN+++NG+AQ G   + L L+ ++    +    FT  +VL
Sbjct: 278 GEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVL 337

Query: 432 SACLHADLFERGQNHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKS 485
             C ++     GQ        VH     I   LD +   C++++  +      A+ +   
Sbjct: 338 KGCANSGNLRAGQ-------IVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVR 390

Query: 486 LPHKPNSLIWSTLLSVCAMKG 506
           +   P+ + WS +++    KG
Sbjct: 391 I-EDPDVVSWSAIITCLDQKG 410



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 99/182 (54%), Gaps = 4/182 (2%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           S ++ +CA    L  G+ +HG+ +  G++ D  + ++L+++Y KCG  + A  VF  +P 
Sbjct: 132 SGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 191

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERGQN 445
           R+VVSW ++I G+   G    A+ L+ ++ +E ++ + FT+ + L AC +  DL    Q 
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           H ++I    G    L   + +++L  +  ++  A  +   +P K N++ W+ LL+  A  
Sbjct: 252 HAEAIKV--GDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNGFAQM 308

Query: 506 GD 507
           GD
Sbjct: 309 GD 310



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+R+  ++  ++L S M +   +    F+ + L+  YAK G +  A  +FD +  RD +S
Sbjct: 643 CSRIATLDSGRQLHS-MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 701

Query: 93  WNALLSAHARSG----SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           WN ++  +++ G    +++   A+ D+  + D V++   ++  ++ G   E  + F+ + 
Sbjct: 702 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 761

Query: 149 K 149
           K
Sbjct: 762 K 762


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/692 (35%), Positives = 402/692 (58%), Gaps = 47/692 (6%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-----SHMDLNFYEPNTTFLHNRLLHF 68
           ++S G          L   C  ++  +  K++      S +D++       F+   L H 
Sbjct: 107 MFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMD------AFVQGSLFHM 160

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSY 124
           Y + G++  AR +FD+M  +D+++ +ALL  +AR G ++++  +  +M       + VS+
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSW 220

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++GF   G+ +EA+ +F +M    F P   T  S L +     +L  G+QIHG ++ 
Sbjct: 221 NGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIK 280

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V +A+ DMY K G +     LFD          N  I+G  +NG   K +++
Sbjct: 281 QGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEM 340

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F      GL  ++    N+                         V WT++I G  QNGK+
Sbjct: 341 F------GLFKEQKMELNV-------------------------VSWTSIIAGCAQNGKD 369

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +AL LF EM    V+P++ +I S++ +C  +A+L HG+  HG AV + + DD+ V SAL
Sbjct: 370 IEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSAL 429

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KCG    +  VFNMMPT+N+V WNS++NGY+ +G+  E +++++ L++  LKPD 
Sbjct: 430 IDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDF 489

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            +F S+LSAC    L + G  +F+ +S  +GI P L+HY+CM+NLLGR+  + +A DLIK
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+S +W  LL+ C ++ ++   E+AA+ LF LEP N G Y+++SN+YAA G W +
Sbjct: 550 EIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTE 609

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           V SIR+ M+S  +KK    SWI++ NKV+  ++ D++HP+ + I E++ ++ ++++++G 
Sbjct: 610 VDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGH 669

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            PN    L D +E+E+ + +  HSEKLA+ + L+  P G TP++++KN+R+CGDCH  +K
Sbjct: 670 RPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG-TPLQVIKNLRICGDCHAVIK 728

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S   GR I +RD+NRFHHF  G CSC D W
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/650 (39%), Positives = 385/650 (59%), Gaps = 49/650 (7%)

Query: 90   IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
            I+  NAL++ +A+  ++ + R++F  MP +D+VS+N+ I+G  +     EA+  F  M++
Sbjct: 390  ILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRR 449

Query: 150  DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
            +   P+ ++ +S L++CA L  +  G+QIHG+ +   L  +V V NAL  +YA+   +++
Sbjct: 450  NGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEE 509

Query: 210  ARWLFDRMNNRNLVSWNLMISGYLKNGQPK--KCIDLFQEMQLLGLNPDEVTVSNI---- 263
             + +F  M   + VSWN  I G L   +    + I  F EM   G  P+ VT  NI    
Sbjct: 510  YQKVFFLMPEYDQVSWNSFI-GALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAV 568

Query: 264  ----------------------------------LGACFQTGRIDDAGRLFHVIKEK-DN 288
                                               G C Q   ++D   +F  + E+ D 
Sbjct: 569  SSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQ---MEDCEIIFSRMSERRDE 625

Query: 289  VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
            V W  MI GY  NG    A+ L   M+ +  R D F++++V+S+CA +A+L  G  VH  
Sbjct: 626  VSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHAC 685

Query: 349  AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            A+   ++ +++V SAL+DMY KCG  D A   F +MP RN+ SWNSMI+GYA++G   +A
Sbjct: 686  AIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKA 745

Query: 409  LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
            L L+ ++ Q    PD  TFV VLSAC H  L + G  HF S+  V+ + P ++H++CM++
Sbjct: 746  LKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVD 805

Query: 469  LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINA 526
            LLGR+ DV K  + IK++P  PN+LIW T+L  C  A   + + G  AA+ L ELEP+NA
Sbjct: 806  LLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNA 865

Query: 527  GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
              Y++LSNM+AA G+WEDV   R +M++  VKK A  SW+ + + VH FV+ D+THPE E
Sbjct: 866  VNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKDGVHVFVAGDQTHPEKE 925

Query: 587  IIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
             IY++L +++ K+++ G+ P TK  L+D + E K + + YHSEKLA+A+ L ++     P
Sbjct: 926  KIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRQSE--LP 983

Query: 647  IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            IRI+KN+RVCGDCH   K+ S+I+ R IILRDSNRFHHF GG CSC+D W
Sbjct: 984  IRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSCQDYW 1033



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 145/571 (25%), Positives = 264/571 (46%), Gaps = 94/571 (16%)

Query: 81  LFDKMPL-RDIISWNALLSAHAR-SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           L  K P   D++  N L+S ++  S S+ D R +F+++ ++ S S+N+ I+ +  +G + 
Sbjct: 167 LISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAI 226

Query: 139 EALQVFSRMQKDRFE----PTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVF 192
            A ++FS MQ++  E    P +YT  S +     L+D  L   +Q+  +I   +   +++
Sbjct: 227 SAFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLY 286

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LL 251
           V +AL   +A+ G ID A+ +F++M++RN V+ N ++ G  +  Q ++   +F+EM+ L+
Sbjct: 287 VGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLV 346

Query: 252 GLNPDE-------------------------------------VTVSNILGACF-QTGRI 273
            +N                                        + + N L   + +   I
Sbjct: 347 EINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAI 406

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D+A  +F ++  KD V W ++I G   N + E+A+  F+ M    + P KFS+ S +SSC
Sbjct: 407 DNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSC 466

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L  +  GQ +HG+ +  G+D D+ VS+AL+ +Y +    ++   VF +MP  + VSWN
Sbjct: 467 ASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWN 526

Query: 394 SMINGYAQN-GQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFE 441
           S I   A +    L+A+  + +++Q   KP+  TF+++LSA            +HA + +
Sbjct: 527 SFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILK 586

Query: 442 RGQNHFDSIS----AVHGITPSLDHYACMINLLGRSSDVDKAVDLIK-----SLPHKPNS 492
                 ++I     A +G    ++    + + +    D      +I       + HK   
Sbjct: 587 HSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMG 646

Query: 493 LIW--------------STLLSVCAMKGDIKHG----EMAARHLFELEPINAGPYIMLSN 534
           L+W              +T+LS CA    ++ G      A R   E E +       L +
Sbjct: 647 LVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSA---LVD 703

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
           MYA CG+ +  +     M  +N+     YSW
Sbjct: 704 MYAKCGKIDYASRFFELMPVRNI-----YSW 729



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 191/406 (47%), Gaps = 50/406 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L++   R+G++   + LFD+MP ++ VS++  ++G+A  G   EA  +F  + 
Sbjct: 73  DVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII 132

Query: 149 KDRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-GG 205
                P  Y   SAL AC +L    L+ G +IHG I       ++ + N L  MY+    
Sbjct: 133 SAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSA 192

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL----LGLNPDE---- 257
            ID AR +F+ +  +   SWN +IS Y + G       LF  MQ     L   P+E    
Sbjct: 193 SIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFC 252

Query: 258 --VTVSNILGACFQT-------------------------------GRIDDAGRLFHVIK 284
             VTV+  L  C  T                               G ID A  +F  + 
Sbjct: 253 SLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMD 312

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH--- 341
           +++ V    ++VG  +  + E+A  +F EM  + V  +  S + ++S+  + ++L     
Sbjct: 313 DRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKR 371

Query: 342 -GQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            GQ VH   +    VD  +L+ +AL+++Y KC   D+A ++F +MP+++ VSWNS+I+G 
Sbjct: 372 KGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGL 431

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
             N +  EA+A +  + +  + P  F+ +S LS+C        GQ 
Sbjct: 432 DHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQ 477



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 171/372 (45%), Gaps = 50/372 (13%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+H +I    L  +VF  N L +++ + G +  A+ LFD M  +NLVSW+ ++SGY +NG
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG------------------------- 271
            P +   LF+ +   GL P+   + + L AC + G                         
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 272 -------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE- 317
                         IDDA R+F  IK K +  W ++I  Y + G    A  LF+ M  E 
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 318 ---DVRPDKFSISSVVSSCAKLA--SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
              + RP++++  S+V+    L    L   + +  +        DL V SAL+  + + G
Sbjct: 240 TELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFARYG 299

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           + D A  +F  M  RN V+ N ++ G A+  Q  EA  ++ K +++ ++ ++ ++  +LS
Sbjct: 300 LIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIF-KEMKDLVEINASSYAVLLS 358

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYA----CMINLLGRSSDVDKAVDLIKSLPH 488
           A       + G+     + A       +D +      ++NL  + + +D A  + + +P 
Sbjct: 359 AFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPS 418

Query: 489 KPNSLIWSTLLS 500
           K +++ W++++S
Sbjct: 419 K-DTVSWNSIIS 429



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 24/201 (11%)

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  D+   + L++++ + G    A  +F+ MP +N+VSW+ +++GYAQNG   EA  L+
Sbjct: 69  GLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLF 128

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI--NLL 470
             ++   L P+ +   S L AC      E G N       +HG+     + + M+  N+L
Sbjct: 129 RGIISAGLLPNHYAIGSALRACQ-----ELGPNMLKLGMEIHGLISKSPYASDMVLSNVL 183

Query: 471 GR-----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-----E 520
                  S+ +D A  + + +  K  S  W++++SV   +GD     ++A  LF     E
Sbjct: 184 MSMYSHCSASIDDARRVFEEIKMK-TSASWNSIISVYCRRGD----AISAFKLFSSMQRE 238

Query: 521 LEPINAGP--YIMLSNMYAAC 539
              +N  P  Y   S +  AC
Sbjct: 239 ATELNCRPNEYTFCSLVTVAC 259



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 99/215 (46%), Gaps = 10/215 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++  +AL+  +A+ G +      F+ MP+R+  S+N+ I+G+A  G   +AL++F++M+
Sbjct: 694 EVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMK 753

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKGGE 206
           +    P   T V  L+AC+ +  +  G + H K +  V  L   +   + + D+  + G+
Sbjct: 754 QHGQLPDHVTFVGVLSACSHVGLVDEGFE-HFKSMGEVYELAPRIEHFSCMVDLLGRAGD 812

Query: 207 IDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----DEVTVS 261
           + K       M  N N + W  ++    +       +       L+ L P    + V +S
Sbjct: 813 VKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLS 872

Query: 262 NILGACFQTGRIDDAGRLFH--VIKEKDNVCWTTM 294
           N+  A  +   +++A        +K++    W TM
Sbjct: 873 NMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTM 907



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRD 120
           L+  YAK GK+ YA   F+ MP+R+I SWN+++S +AR G       LF +M     + D
Sbjct: 701 LVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPD 760

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRM 147
            V++   ++  ++ G   E  + F  M
Sbjct: 761 HVTFVGVLSACSHVGLVDEGFEHFKSM 787


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/613 (38%), Positives = 359/613 (58%), Gaps = 41/613 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR-----EALQV 143
           D++  NAL++ + +   +QD R  FD+M  RD +S++  IAG+A  G+       E  Q+
Sbjct: 314 DVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQL 373

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
             RM+++   P   T +S L AC+    L +G+QIH +I       +  ++ A+ +MYAK
Sbjct: 374 LERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAK 433

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I +A  +F +M N+N+V+W  +++ Y+K      C DL                   
Sbjct: 434 CGSIYEAEQVFSKMENKNVVAWASLLTMYIK------CGDL------------------- 468

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A ++F  +  ++ V W  MI GY Q+G       L + M  E  +PD+
Sbjct: 469 ----------TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDR 518

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            +I S++ +C  L++L  G++VH +AV LG++ D +V+++LI MY KCG   +A TVF+ 
Sbjct: 519 VTIISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDK 578

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +  R+ V+WN+M+ GY Q+G   EA+ L+ ++L+E + P+  TF +V+SAC  A L + G
Sbjct: 579 ISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEG 638

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +  F  +     + P   HY CM++LLGR+  + +A + I+ +P +P+  +W  LL  C 
Sbjct: 639 REIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACK 698

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
              +++  E AA H+  LEP NA  Y+ LSN+YA  GRW+D   +R  M  K +KK    
Sbjct: 699 SHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGE 758

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           S IEID ++H FV+ED  HPE + I+ EL  L K+++EAG++P+ + VLHD  E +K ++
Sbjct: 759 SSIEIDGRIHTFVAEDCAHPEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERA 818

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           +C+HSEKLA+AY L+K P G TPIRIMKN+RVCGDCH   KF S I  R I+ RD+NRFH
Sbjct: 819 LCHHSEKLAIAYGLLKTPPG-TPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFH 877

Query: 684 HFVGGNCSCKDNW 696
           +F  G CSC D W
Sbjct: 878 YFKNGTCSCGDFW 890



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/617 (24%), Positives = 263/617 (42%), Gaps = 124/617 (20%)

Query: 6   KLRQAIDTL---YSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +L++AI  L     RG       Y  ++  C ++   E  K +   +D         +L 
Sbjct: 58  RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLD-ELGLAIDIYLG 116

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L++FY+K G +     +F +M LRD+++W+++                          
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSM-------------------------- 150

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                IA +A      +A   F RM+    EP   T +S L AC     L + ++IH  +
Sbjct: 151 -----IAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVV 205

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  +V V  AL  MY+K GEI  A  +F +M  RN+VSW  +I    ++ +  +  
Sbjct: 206 KASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAF 265

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------------------- 272
           +L+++M   G++P+ VT  ++L +C        GR                         
Sbjct: 266 ELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMY 325

Query: 273 -----IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE-----EDALILFNEMLSEDVRPD 322
                I DA   F  + ++D + W+ MI GY Q+G +     ++   L   M  E V P+
Sbjct: 326 CKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPN 385

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD------ 376
           K +  S++ +C+   +L  G+ +H +   +G + D  + +A+ +MY KCG   +      
Sbjct: 386 KVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFS 445

Query: 377 --------AWT-----------------VFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                   AW                  VF+ M TRNVVSWN MI GYAQ+G   +   L
Sbjct: 446 KMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFEL 505

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-NHFDSISAVHGITPSLDHYACMINLL 470
              +  E  +PD  T +S+L AC      ERG+  H +++    G+         +I + 
Sbjct: 506 LSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKL--GLESDTVVATSLIGMY 563

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG------EMAARHLFELEPI 524
            +  +V +A  +   + ++ +++ W+ +L+     G  +HG      ++  R L E  P 
Sbjct: 564 SKCGEVTEARTVFDKISNR-DTVAWNAMLA-----GYGQHGIGPEAVDLFKRMLKERVPP 617

Query: 525 NAGPYIMLSNMYAACGR 541
           N    I  + + +ACGR
Sbjct: 618 NE---ITFTAVISACGR 631



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 221/459 (48%), Gaps = 45/459 (9%)

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G  +EA+Q+   +++        T+   +  CA+L     GK +H ++    L  ++++ 
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N+L + Y+K G++     +F RM  R++V+W+ MI+ Y  N  P K  D F+ M+   + 
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 255 PDEVTVSNILGAC-----------------------------------FQTGRIDDAGRL 279
           P+ +T  +IL AC                                    + G I  A  +
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEI 236

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +KE++ V WT +I    Q+ K  +A  L+ +ML   + P+  +  S+++SC    +L
Sbjct: 237 FQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEAL 296

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +H      G++ D++V++ALI MYCKC    DA   F+ M  R+V+SW++MI GY
Sbjct: 297 NRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGY 356

Query: 400 AQNG-QDLEAL----ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           AQ+G QD E+L     L +++ +E + P+  TF+S+L AC      E+G+     IS V 
Sbjct: 357 AQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV- 415

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G          + N+  +   + +A  +   + +K N + W++LL++    GD+   E  
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK-NVVAWASLLTMYIKCGDLTSAE-- 472

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
            +   E+   N   + ++   YA  G    V  + SSMK
Sbjct: 473 -KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 155/277 (55%), Gaps = 1/277 (0%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           Q ++ +   G    +  +  ++  C+    +E  +++ + +    +E + + L   + + 
Sbjct: 372 QLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRS-LQTAIFNM 430

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           YAK G ++ A  +F KM  +++++W +LL+ + + G +     +F +M  R+ VS+N  I
Sbjct: 431 YAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMI 490

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           AG+A  G   +  ++ S M+ + F+P   T +S L AC  L  L RGK +H + V   L 
Sbjct: 491 AGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLE 550

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +  V  +L  MY+K GE+ +AR +FD+++NR+ V+WN M++GY ++G   + +DLF+ M
Sbjct: 551 SDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRM 610

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
               + P+E+T + ++ AC + G + +   +F +++E
Sbjct: 611 LKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQE 647


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 252/664 (37%), Positives = 380/664 (57%), Gaps = 45/664 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y  +G    AR +FD+MP R+I+SWN L+S + ++  +++ R +F+ MP R+ V
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVV 111

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   + G+  +G   EA  +F RM  +R E +       L    ++ D R+   +    
Sbjct: 112 SWTAMVKGYVQEGMVVEAELLFWRM-PERNEVSWTVMFGGLIDGGRIDDARKLYDMMP-- 168

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                G +V     +     + G +D+AR +FD M  RN+++W  MI+GY +N +     
Sbjct: 169 -----GKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVAR 223

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI------------------- 283
            LF+ M        EV+ +++L     +GRI+DA   F V+                   
Sbjct: 224 KLFEVMP----EKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVG 279

Query: 284 ------------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
                       +++DN  W  MI  Y + G E +AL LF +M  + VRP   S+ S++S
Sbjct: 280 EIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILS 339

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            CA LASL +G+ VH   V    D D+ V+S L+ MY KCG    A  VF+  P+++++ 
Sbjct: 340 VCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIM 399

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WNS+I+GYA +G   EAL ++ ++      P+  T +++L+AC +    E G   F+S+ 
Sbjct: 400 WNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESME 459

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           +   +TP+++HY+C +++LGR+  VDKA++LI S+  KP++ +W  LL  C     +   
Sbjct: 460 SKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLA 519

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           E+AA+ LFE+EP NAGPYI+LS++ A+  +W DVA +R +M++KNV KF   SWIE+  K
Sbjct: 520 EVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKK 579

Query: 572 VHKFVSED-RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           VH F     R HPE  +I   L K    L+EAG+SP+   VLHD  EEEKV S+  HSE+
Sbjct: 580 VHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSER 639

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY L+K P GV PIR+MKN+RVCGDCH  +K  S +  R IILRD+NRFHHF  G C
Sbjct: 640 LAVAYGLLKLPEGV-PIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGEC 698

Query: 691 SCKD 694
           SC+D
Sbjct: 699 SCRD 702



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 171/405 (42%), Gaps = 90/405 (22%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS--N 262
           G+I++AR  FD +  + + SWN ++SGY  NG P++   +F EM      P+   VS   
Sbjct: 31  GQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM------PERNIVSWNG 84

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++    +   I++A  +F ++ E++ V WT M+ GY Q G   +A +LF  M      P+
Sbjct: 85  LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRM------PE 138

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-----------DLLVSSALIDMYCKC 371
           +  +S  V        ++ G +  G+     +DD           D++ S+ +I   C+ 
Sbjct: 139 RNEVSWTV--------MFGGLIDGGR-----IDDARKLYDMMPGKDVVASTNMIGGLCRE 185

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  D+A  +F+ M  RNV++W +MI GY QN +   A  L++ + ++       ++ S+L
Sbjct: 186 GRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKT----EVSWTSML 241

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHK 489
                +   E  +  F+       + P     AC  MI  LG   ++ KA  +   +  +
Sbjct: 242 LGYTLSGRIEDAEEFFE-------VMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDR 294

Query: 490 PNSLIWS-----------------------------------TLLSVCAMKGDIKHGEMA 514
            N+  W                                    ++LSVCA    +++G   
Sbjct: 295 DNA-TWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQV 353

Query: 515 ARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV 557
             HL   +  +   Y+  +L  MY  CG       +     SK++
Sbjct: 354 HAHLVRCQ-FDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDI 397



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 21/197 (10%)

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I    + G  ++A   F+ +  + + SWNS+++GY  NG   EA  ++D++ + N+    
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI---- 79

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            ++  ++S  +   + E  +N F+ +   + ++     +  M+    +   V +A  L  
Sbjct: 80  VSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVEAELLFW 134

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEPINAGPYIMLSNMYAAC---G 540
            +P + N + W+ +       G I  G +  AR L+++ P      +  +NM       G
Sbjct: 135 RMPER-NEVSWTVMFG-----GLIDGGRIDDARKLYDMMP--GKDVVASTNMIGGLCREG 186

Query: 541 RWEDVASIRSSMKSKNV 557
           R ++   I   M+ +NV
Sbjct: 187 RVDEAREIFDEMRERNV 203


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/603 (40%), Positives = 361/603 (59%), Gaps = 4/603 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A+A  G     R +FD++  ++ V +N  I  + N G  ++AL VF  M    F P 
Sbjct: 77  LMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPD 136

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +YT+   L AC+   +L  G QIHG +V   L  N+++ N L  MY K   +D AR + D
Sbjct: 137 NYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLD 196

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
            M  R++VSWN M++GY +NG+    + L +EM+ L L PD  T+ ++L A   T    +
Sbjct: 197 EMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNV 256

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  +KEK  + W  MI  Y  N    +A+ L+ +M    V PD  SISSV+ +C
Sbjct: 257 LYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC 316

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++   G+ +H       +  +LL+ +ALIDMY KCG   +A  VF+ M  R+VVSW 
Sbjct: 317 GDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWT 376

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           SMI+ Y  +GQ  +A+AL+ K+      PD   FVSVL+AC HA L + G+  F+ + A 
Sbjct: 377 SMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFN-LMAE 435

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +GITP ++HY CM++LLGR+  +D+A  L + +P +PN  +W +LLS C +   +    +
Sbjct: 436 YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALL 495

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA HLF+L P  +G Y++LSN+YA  GRW+DV ++RS M SK +KK    S +EI++ V+
Sbjct: 496 AADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVY 555

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D++H +++ IY+ L  L+ +++E G+ P T   LHD +EE+K   +  HSEKLA+
Sbjct: 556 TFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAI 615

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            + ++    G T IRI KNIRVCGDCH+  K  S I  R II+RD++RFHHF  G CSC 
Sbjct: 616 VFAILNTKPGST-IRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCG 674

Query: 694 DNW 696
           D W
Sbjct: 675 DYW 677



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 57/385 (14%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           +D+N Y      + N L+  Y K   L  AR + D+MP RD++SWN++++ +A++G   D
Sbjct: 168 LDMNLY------IGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFND 221

Query: 109 -------------------------------------LRALFDKMPIRDSVSYNTAIAGF 131
                                                ++ +F K+  +  +S+N  IA +
Sbjct: 222 ALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVY 281

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
            N     EA+ ++ +MQ    EP   +  S L AC  L     G++IH  +    L  N+
Sbjct: 282 VNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNL 341

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            + NAL DMYAK G + +AR +FD+M  R++VSW  MIS Y  +GQ K  + LF++M+  
Sbjct: 342 LLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDS 401

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC----WTTMIVGYTQNGKEEDA 307
           G  PD +   ++L AC   G +D+    F+++ E         +  M+    + GK ++A
Sbjct: 402 GFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEA 461

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSAL 364
             L  +M  E   P++    S++S+C   +S+    +       L  +     +L+S   
Sbjct: 462 YHLTRQMPME---PNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLS--- 515

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNV 389
            ++Y K G   D  TV ++M ++ +
Sbjct: 516 -NIYAKAGRWQDVETVRSIMNSKGI 539



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 164/360 (45%), Gaps = 70/360 (19%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+S + +   +   R + D+MP RD VS+N+ +AG+A  G   +AL++   M+  + +
Sbjct: 176 NGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLK 235

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L A                        N    N L   Y K         +
Sbjct: 236 PDAGTMGSLLPAVT----------------------NTSCDNVL---YVKD--------M 262

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F ++  ++L+SWN+MI+ Y+ N  P + +DL+ +MQ+ G+ PD V++S++L AC   G +
Sbjct: 263 FVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPAC---GDL 319

Query: 274 DDA--GRLFHVIKEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             A  GR  H   E+       +    +I  Y + G  ++A  +F++M+  DV     S 
Sbjct: 320 SAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDV----VSW 375

Query: 327 SSVVSSCAKLASLYHGQVVHGK-AVVL-------GVDDDLLVSSALIDMYCKCGVTDDAW 378
           +S++S+        +G    GK AV L       G   D +   +++      G+ D+  
Sbjct: 376 TSMISA--------YGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGR 427

Query: 379 TVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             FN+M     T  +  +N M++   + G+  EA   Y    Q  ++P+   + S+LSAC
Sbjct: 428 YCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEA---YHLTRQMPMEPNERVWGSLLSAC 484



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  ++   L +R+  +++     PN   L N L+  YAK G L  AR +FD+M  RD++S
Sbjct: 316 CGDLSAAVLGRRIHEYVERKKLRPNL-LLENALIDMYAKCGCLKEARAVFDQMMFRDVVS 374

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W +++SA+  SG  +D  ALF KM  RDS                              F
Sbjct: 375 WTSMISAYGMSGQGKDAVALFKKM--RDS-----------------------------GF 403

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P     VS L AC+    +  G+     +    +   +   N + D+  + G+ID+A  
Sbjct: 404 TPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYH 463

Query: 213 LFDRM 217
           L  +M
Sbjct: 464 LTRQM 468


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 381/643 (59%), Gaps = 37/643 (5%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +I +N+L+ ++ ++  +     LF +MP +DSVS+N  I G+   GF  EAL++F +M+ 
Sbjct: 178 LIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRN 237

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
             F+P+ +T  + L       D+  G+QIHG  +  +   ++FV NAL D Y+K   ID 
Sbjct: 238 MDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDL 297

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-------------------- 249
           A+ LFD M   + VS+N++I+GY  NGQ +K  DLF+ +Q                    
Sbjct: 298 AKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAI 357

Query: 250 --------------LLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                         ++     EV V N L   + +  + +DA R+F  +  +++V WT +
Sbjct: 358 ELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAI 417

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I  Y Q G  E+AL +F EM  E+V  D+ + +S + + A LAS+  G+ +H   + LG+
Sbjct: 418 ISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIRLGL 477

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
              +   S L+DMY  CG   DA  VF  MP RN+V WN++I+ Y+QNG      + +  
Sbjct: 478 LSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFAD 537

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +++  L PDS +F+SVL+AC H  L E+   +F+S++ V+ + P   HYA MI++L RS 
Sbjct: 538 MIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSG 597

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLS 533
             ++A +LI  +P +P+ ++WS++L+ C +  +    + AA  LF+++ + +A  Y+ +S
Sbjct: 598 RFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMS 657

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G+WE+ A ++ +M+ + VKK  AYSW+EID++VH F + DRTHP+TE I  +++
Sbjct: 658 NIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKIN 717

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L++ + + G+ P+T   L +  EE K++S+ YHSE+LA+A+ LI  P G +PI IMKN+
Sbjct: 718 SLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEG-SPIIIMKNL 776

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R C DCH  +K  S I+GR I +RDS+RFHHF  G+CSC D W
Sbjct: 777 RACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 130/511 (25%), Positives = 222/511 (43%), Gaps = 73/511 (14%)

Query: 32  DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           D  R N +  A++L   M       NT+ + N ++  Y KS  LF AR+LF+ M  R+ +
Sbjct: 55  DLVRANQIAKARQLFDEMPYR----NTSSV-NMMVSGYVKSRNLFRARELFESMFSRNEV 109

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SW  +                               I G++     +EA  +++ M +  
Sbjct: 110 SWTIM-------------------------------IGGYSQNNQPKEAFNLYTEMCRSG 138

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +P   T  + L+       L+   QIH  I+      ++ V N+L D Y K   +D A 
Sbjct: 139 VKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIAS 198

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT- 270
            LF  M  ++ VS+N+MI+GY K G  ++ + LF +M+ +   P   T + +LG    + 
Sbjct: 199 QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSE 258

Query: 271 ----------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                               ID A  LF  + E D V +  +I 
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  NG+ E +  LF  +         F  ++++S  A   +L  G+  H +AVV     
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS 378

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ V +AL+DMY KC   +DA  +F  +  RN V W ++I+ Y Q G   EAL ++ ++ 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +EN+  D  TF S L A  +      G+    S+  + G+  S+   + ++++      +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIRL-GLLSSVFSGSVLVDMYANCGSM 497

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             A+++ K +P + N + W+ L+S  +  GD
Sbjct: 498 KDAIEVFKEMPDR-NIVCWNALISAYSQNGD 527



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 177/384 (46%), Gaps = 47/384 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   NALL  +++   +   + LFD+MP  D VSYN  I G+A  G   ++  +F R+Q
Sbjct: 278 DIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F+  ++   + L+  A  L+L  G+Q H + VV      V V NAL DMYAK  + +
Sbjct: 338 GTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFE 397

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F  +  RN V W  +IS Y++ G  ++ + +F+EM    ++ D+ T ++ L A  
Sbjct: 398 DANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASA 457

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                                G + DA  +F  + +++ VCW  
Sbjct: 458 NLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNA 517

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA-----KLASLYHGQVVHGK 348
           +I  Y+QNG  E     F +M+   + PD  S  SV+++C+     + A  Y   +    
Sbjct: 518 LISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQ-- 575

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDL 406
             V  +D      + +ID+ C+ G  ++A  + + MP   + V W+S++N       QDL
Sbjct: 576 --VYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDL 633

Query: 407 EALALYDKLLQENLKPDSFTFVSV 430
              A  D+L + +   D+  +V++
Sbjct: 634 AKKAA-DQLFKMDALRDAAAYVNM 656



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/416 (25%), Positives = 181/416 (43%), Gaps = 89/416 (21%)

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           +  +I KAR LFD M  RN  S N+M+SGY+K+       +LF+                
Sbjct: 58  RANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSR------NLFR---------------- 95

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                        A  LF  +  ++ V WT MI GY+QN + ++A  L+ EM    V+PD
Sbjct: 96  -------------ARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPD 142

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             + ++++S      +L     +H   +  G    L+V ++L+D YCK    D A  +F+
Sbjct: 143 HITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFS 202

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA----- 437
            MPT++ VS+N MI GY + G   EAL L+ ++   + +P  FTF ++L   + +     
Sbjct: 203 EMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIF 262

Query: 438 ------------------------------DLFERGQNHFDSISAVHGITPSLDHYACMI 467
                                         D  +  +N FD +  + G++     Y  +I
Sbjct: 263 GQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVS-----YNIII 317

Query: 468 NLLGRSSDVDKAVDLIKSLPHKP---NSLIWSTLLSVCAMKGDIKHGE------MAARHL 518
                +   +K+ DL K L        +  ++T+LSV A++ ++  G       +    +
Sbjct: 318 TGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAV 377

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
            E++  NA     L +MYA C ++ED   I +++  +N   + A   I +    H+
Sbjct: 378 SEVQVGNA-----LVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHE 428



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/361 (29%), Positives = 172/361 (47%), Gaps = 21/361 (5%)

Query: 40  ELAKRLQ--SHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
           +L KRLQ  S    NF  P  T L    +      G+  +A+ +     + ++   NAL+
Sbjct: 331 DLFKRLQGTSFDRKNF--PFATMLSVAAIELNLSMGRQTHAQAVV-TTAVSEVQVGNALV 387

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
             +A+    +D   +F  +  R+SV +   I+ +  KGF  EAL++F  M ++       
Sbjct: 388 DMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQA 447

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T  S L A A L  +  GKQ+H  ++   L  +VF  + L DMYA  G +  A  +F  M
Sbjct: 448 TFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEM 507

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
            +RN+V WN +IS Y +NG  +     F +M   GL PD V+  ++L AC   G ++ A 
Sbjct: 508 PDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKAL 567

Query: 278 RLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
             F+ + +   +      + TMI    ++G+  +A  L +EM  E   PD+   SSV++S
Sbjct: 568 WYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFE---PDEVMWSSVLNS 624

Query: 333 CAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDM---YCKCGVTDDAWTVFNMMPTRN 388
           C     ++  Q +  KA   L   D L  ++A ++M   Y + G  ++A  V   M  R 
Sbjct: 625 C----RIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERG 680

Query: 389 V 389
           V
Sbjct: 681 V 681


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/680 (35%), Positives = 378/680 (55%), Gaps = 44/680 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF-LHNRLLHFYAK---SGKLFYARD 80
           ++T L+    +++D+ ++   Q H  ++         + N L+  Y K    G    AR 
Sbjct: 161 SFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARK 220

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           + D+MP +D ++W  ++  H R G V   R+ F+++     V +N  I+G+   G   EA
Sbjct: 221 VLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEA 280

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG----GNVFVRNA 196
            ++F RM   R  P ++T  S L+ACA       GK +HG+ +           + V NA
Sbjct: 281 FELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNA 340

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L  +Y+K G+I  A  +FD M  +++VSWN ++SGY+                       
Sbjct: 341 LVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYI----------------------- 377

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       ++G +D+A R+F  +  K  + W  M+ GY   G  EDAL LFN+M S
Sbjct: 378 ------------ESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRS 425

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           EDV+P  ++ +  V++C +L +L HG+ +H   V  G +      +AL+ MY +CG   D
Sbjct: 426 EDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKD 485

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  VF +MP  + VSWN+MI+   Q+G   EAL L+D+++ + + PD  +F+++L+AC H
Sbjct: 486 ARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNH 545

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           A L + G  +F+S+    GI+P  DHYA +I+LLGR+  + +A DLIK++P +P   IW 
Sbjct: 546 AGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWE 605

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            +LS C + GD++ G  AA  LF++ P + G YI+LSN Y+A GRW D A +R  M+ + 
Sbjct: 606 AILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRG 665

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           VKK    SWIE+ NKVH F+  D  HP+   +Y  L  +  K+++ G+ P+TK  L D  
Sbjct: 666 VKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMA 725

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
             EK   +  HSE+LA+++ L+K P G T + ++KN+++CGDCH  M F S  +GR I++
Sbjct: 726 PHEKEYVLFAHSERLAVSFGLLKLPAGAT-VTVLKNLKICGDCHTAMMFMSRAVGREIVV 784

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC + W
Sbjct: 785 RDVRRFHHFKDGECSCGNYW 804


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/643 (37%), Positives = 367/643 (57%), Gaps = 47/643 (7%)

Query: 63  NRLLHFYAKSGKLFYARD---LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           N L+  Y K   L   RD   + D+MP +D ++W  ++  + R G V   R++F+++ ++
Sbjct: 198 NALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVK 257

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
             V +N  I+G+ + G   EA ++F RM  +R    ++T  S L+ACA       GK +H
Sbjct: 258 FDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVH 317

Query: 180 GKIVVGNLGGNVF------VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           G+I    L  N        V NAL  +Y+K G I  AR +FD M ++++VSWN ++SGY+
Sbjct: 318 GQIT--RLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYV 375

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
           ++                              +C     +D A  +F  +  K+ + W  
Sbjct: 376 ES------------------------------SC-----LDKAVEVFEEMPYKNELSWMV 400

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+ GY   G  EDAL LFN M +EDV+P  ++ +  +S+C +L SL HG+ +HG  V LG
Sbjct: 401 MVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLG 460

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            +      +ALI MY +CG   +A  +F +MP  + VSWN+MI+   Q+G   EAL L+D
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFD 520

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +++ E + PD  +F++VL+AC H+ L + G  +F+S+    GI P  DHY  +I+LLGR+
Sbjct: 521 RMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRA 580

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A DLIK++P +P   IW  +LS C   GD++ G  AA  LF++ P + G YI+LS
Sbjct: 581 GRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLS 640

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N Y+A GRW D A +R  M+ + VKK    SWIE  NKVH FV  D  HPE   +Y+ L 
Sbjct: 641 NTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLE 700

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            +  ++++ G+ P+TK+VLHD +  +K   +  HSE+LA+ + L+K P G T + ++KN+
Sbjct: 701 MVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGAT-VTVLKNL 759

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  M F S  +GR I++RD  RFHHF  G CSC + W
Sbjct: 760 RICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 159/292 (54%), Gaps = 8/292 (2%)

Query: 47  SHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSV 106
           + +  NF       ++N L+  Y+K G +  AR +FD M  +D++SWN +LS +  S  +
Sbjct: 321 TRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCL 380

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
                +F++MP ++ +S+   ++G+ + GFS +AL++F+RM+ +  +P DYT+  A++AC
Sbjct: 381 DKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISAC 440

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
            +L  L+ GKQ+HG +V     G+    NAL  MYA+ G + +A  +F  M N + VSWN
Sbjct: 441 GELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWN 500

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
            MIS   ++G  ++ ++LF  M   G+ PD ++   +L AC  +G +D+  + F  +K  
Sbjct: 501 AMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRD 560

Query: 287 DNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             +      +T +I    + G+  +A  L   M  E   P      +++S C
Sbjct: 561 FGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFE---PTPSIWEAILSGC 609



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/429 (23%), Positives = 164/429 (38%), Gaps = 114/429 (26%)

Query: 195 NALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
            +L   YA  G +  A   FD +    R+ V  N +IS Y +       + +F+ +   G
Sbjct: 92  TSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASG 151

Query: 253 -LNPDEVTVSNILGA----------------------------------------CFQTG 271
            L PD+ + + +L A                                        C    
Sbjct: 152 SLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALE 211

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK--------EE------------------ 305
              DA ++   + +KD + WTTM+VGY + G         EE                  
Sbjct: 212 ATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVH 271

Query: 306 -----DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG----VDD 356
                +A  LF  M+ E V  D+F+ +SV+S+CA      HG+ VHG+   L      + 
Sbjct: 272 SGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEA 331

Query: 357 DLLVSSALIDMYCKCG-------------------------------VTDDAWTVFNMMP 385
            L V++AL+ +Y KCG                                 D A  VF  MP
Sbjct: 332 ALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMP 391

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            +N +SW  M++GY   G   +AL L++++  E++KP  +T+   +SAC      + G+ 
Sbjct: 392 YKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQ 451

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
               +  + G   S      +I +  R   V +A  +   +P+  +S+ W+ ++S     
Sbjct: 452 LHGHLVQL-GFEGSNSAGNALITMYARCGAVKEANLMFLVMPNI-DSVSWNAMISALGQH 509

Query: 506 GDIKHGEMA 514
           G   HG  A
Sbjct: 510 G---HGREA 515



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDL 406
           A +   D   + +++L+  Y   G    A + F+ +P   R+ V  N++I+ YA+     
Sbjct: 79  ATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAA 138

Query: 407 EALALYDKLLQE-NLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYA 464
            A+A++  LL   +L+PD ++F ++LSA  H  ++  R            G    L    
Sbjct: 139 PAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSN 198

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKP--NSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
            ++ L  +   ++   D  K L   P  ++L W+T++     +GD+     AAR +FE
Sbjct: 199 ALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVG----AARSVFE 252


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/717 (37%), Positives = 402/717 (56%), Gaps = 46/717 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T + +  L+  C    D+   K L S + +  + P +T+  N  +  Y+K G+L +AR  
Sbjct: 7   TLQRFRHLLKTCIAERDLSTGKSLHS-LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKA 65

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F  +   ++ S+NA+++A+A+         LFD++P  D VSYNT I+ +A+ G +  AL
Sbjct: 66  FQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPAL 125

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +FS M++   +   +T  + + AC    D+    Q+H   V       V V NAL   Y
Sbjct: 126 GLFSGMREMGLDMDXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 202 AKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            K G++D A+ +F  M   R+ VSWN MI  Y ++ +  K + LFQEM   GLN D  T+
Sbjct: 184 GKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL 243

Query: 261 SNILGA--CFQ------------------------TGRID----------DAGRLFHVIK 284
           +++L A  C +                        +G ID          D  ++F  I 
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT 303

Query: 285 EKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           E D V W TM+ GY+QN +  EDAL  F +M     RP+  S   V+S+C+ L+S   G+
Sbjct: 304 EPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGK 363

Query: 344 VVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
            +H  A+   +  + + V +ALI MY KCG   DA  +F+ M   N VS NSMI GYAQ+
Sbjct: 364 QIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G ++E+L L+  +L+  + P S TF+SVLSAC H    E G N+F+ +     I P  +H
Sbjct: 424 GIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEH 483

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y+CMI+LLGR+  + +A +LI  +P  P S+ W++LL  C   G+I+    AA  + +LE
Sbjct: 484 YSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P NA PY++LSNMYA+ GRWE+VA++R  M+ + VKK    SWIE+  ++H FV+ED +H
Sbjct: 544 PSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSH 603

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVL---HDTQEEEKVKSICYHSEKLALAYCLIK 639
           P  + IYE L ++  K++ AG+ P+ +  L     T+  EK   + +HSEKLA+A+ LI 
Sbjct: 604 PMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIS 663

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              G  P+ ++KN+R+CGDCH  +KF S I GR I +RD++RFH F  G CSC D W
Sbjct: 664 TKDG-EPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 268/717 (37%), Positives = 402/717 (56%), Gaps = 46/717 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T + +  L+  C    D+   K L S + +  + P +T+  N  +  Y+K G+L +AR  
Sbjct: 7   TLQRFRHLLKTCIAERDLSTGKSLHS-LYIKSFIPPSTYFSNHFILLYSKCGRLAWARKA 65

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F  +   ++ S+NA+++A+A+         LFD++P  D VSYNT I+ +A+ G +  AL
Sbjct: 66  FQDISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPAL 125

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +FS M++   +   +T  + + AC    D+    Q+H   V       V V NAL   Y
Sbjct: 126 GLFSGMREMGLDMDGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYY 183

Query: 202 AKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            K G++D A+ +F  M   R+ VSWN MI  Y ++ +  K + LFQEM   GLN D  T+
Sbjct: 184 GKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTL 243

Query: 261 SNILGA--CFQ------------------------TGRID----------DAGRLFHVIK 284
           +++L A  C +                        +G ID          D  ++F  I 
Sbjct: 244 ASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEIT 303

Query: 285 EKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           E D V W TM+ GY+QN +  EDAL  F +M     RP+  S   V+S+C+ L+S   G+
Sbjct: 304 EPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGK 363

Query: 344 VVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
            +H  A+   +  + + V +ALI MY KCG   DA  +F+ M   N VS NSMI GYAQ+
Sbjct: 364 QIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQH 423

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G ++E+L L+  +L+  + P S TF+SVLSAC H    E G N+F+ +     I P  +H
Sbjct: 424 GIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEH 483

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y+CMI+LLGR+  + +A +LI  +P  P S+ W++LL  C   G+I+    AA  + +LE
Sbjct: 484 YSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLE 543

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P NA PY++LSNMYA+ GRWE+VA++R  M+ + VKK    SWIE+  ++H FV+ED +H
Sbjct: 544 PSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSH 603

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVL---HDTQEEEKVKSICYHSEKLALAYCLIK 639
           P  + IYE L ++  K++ AG+ P+ +  L     T+  EK   + +HSEKLA+A+ LI 
Sbjct: 604 PMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIS 663

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              G  P+ ++KN+R+CGDCH  +KF S I GR I +RD++RFH F  G CSC D W
Sbjct: 664 TKDG-EPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/639 (38%), Positives = 383/639 (59%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+ A+ + GSV   R +FD++P R  V++N+ IA +   G S+EA+ ++ RM  D   
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARW 212
           P ++T  S   A + L  +  G++ HG+ VV  +G  NVFV +AL DMYAK G++  AR 
Sbjct: 174 PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARL 233

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           + D++  +++V +  +I GY  +G+  + + +F+ M   G+  +E T+S++L  C     
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                         ++ G +DD+ ++F      + V WT++IVG
Sbjct: 294 LTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVG 353

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             QNG+EE AL+ F +ML   + P+ F++SSV+ +C+ LA L  G+ +H   +  G+D D
Sbjct: 354 LVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDID 413

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +ALID Y KCG T+ A +VFN +   +VVS NSMI  YAQNG   EAL L+  +  
Sbjct: 414 KYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKD 473

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             L+P++ T++ VLSAC +A L E G + F S      I  + DHYACM++LLGR+  + 
Sbjct: 474 TGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLK 533

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  LI  + +  + +IW TLLS C + GD++  +     + +L P + G +++LSN+YA
Sbjct: 534 EAEMLINQV-NISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYA 592

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           + G W  V  ++S+M+   +KK  A SW++++ ++H F++ D +HP    I E+L +LI+
Sbjct: 593 STGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIE 652

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K++E G+ P+T+ VL D  EE+K++S+ YHSEKLA+A+ L +  +  T IRI+KN+RVCG
Sbjct: 653 KVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCG 712

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH +MKF S I+GR II RD  RFHHF  G CSC D W
Sbjct: 713 DCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 261/630 (41%), Positives = 370/630 (58%), Gaps = 40/630 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +A+ GS+ D R +F  M  +DSVS+N+ I G    G   EA++ +  M++    
Sbjct: 73  NGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEIL 132

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T +S+L++CA L   + G+QIHG+ +   +  NV V NAL  +YA+ G +++ R +
Sbjct: 133 PGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKI 192

Query: 214 FDRMNNRNLVSWNLMISGY-----------------LKNGQPKKCIDL-----------F 245
           F  M   + VSWN +I                    L+ GQ    I             F
Sbjct: 193 FSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSF 252

Query: 246 QEM--QLLGLN-----PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
            E+  Q+ GL       DE T  N L AC+ + G +D   ++F  + E+ D+V W +MI 
Sbjct: 253 GELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS 312

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  N     AL L   ML    R D F  ++V+S+ A +A+L  G  VH  +V   ++ 
Sbjct: 313 GYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 372

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL- 415
           D++V SAL+DMY KCG  D A   FN MP RN  SWNSMI+GYA++GQ  EAL L+  + 
Sbjct: 373 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMK 432

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           L     PD  TFV VLSAC HA L E G  HF+S+S  +G+ P ++H++CM +LLGR+ +
Sbjct: 433 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGE 492

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH--GEMAARHLFELEPINAGPYIMLS 533
           +DK  D I  +P KPN LIW T+L  C      K   G+ AA  LF+LEP NA  Y++L 
Sbjct: 493 LDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLG 552

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYAA GRWED+   R  MK  +VKK A YSW+ + + VH FV+ D++HP+T++IY++L 
Sbjct: 553 NMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLK 612

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L +K+++AG+ P T   L+D ++E K + + YHSEKLA+A+ L  +     PIRIMKN+
Sbjct: 613 ELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNL 672

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           RVCGDCH   K+ S I GR IILRDSNR+ 
Sbjct: 673 RVCGDCHSAFKYISKIEGRQIILRDSNRYE 702



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 204/429 (47%), Gaps = 53/429 (12%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA-----CAQLLDLRRGKQIHGKI 182
           + G   + +  EA ++F  M     + +  ++V  L++      A+ + L++G+++HG +
Sbjct: 1   MVGLVRQKWGEEATKLFMDMN-SMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHV 59

Query: 183 VV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           +  G +   V + N L +MYAK G I  AR +F  M  ++ VSWN MI+G  +NG   + 
Sbjct: 60  ITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEA 119

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGAC---------------------------------- 267
           ++ +Q M+   + P   T+ + L +C                                  
Sbjct: 120 VERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTL 179

Query: 268 -FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE-EDALILFNEMLSEDVRPDKFS 325
             +TG +++  ++F  + E D V W ++I     + +   +A+  F   L    + ++ +
Sbjct: 180 YAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRIT 239

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            SSV+S+ + L+    G+ +HG A+   + D+    +ALI  Y KCG  D    +F+ M 
Sbjct: 240 FSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMS 299

Query: 386 T-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R+ V+WNSMI+GY  N    +AL L   +LQ   + DSF + +VLSA       ERG 
Sbjct: 300 ERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGM 359

Query: 445 N-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
             H  S+ A   +   +   + ++++  +   +D A+    ++P + NS  W++++S   
Sbjct: 360 EVHACSVRAC--LESDVVVGSALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMIS--- 413

Query: 504 MKGDIKHGE 512
             G  +HG+
Sbjct: 414 --GYARHGQ 420



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 124/298 (41%), Gaps = 73/298 (24%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA-----------------RS 103
           + N L+  YA++G L   R +F  MP  D +SWN+++ A A                 R+
Sbjct: 172 VSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRA 231

Query: 104 GSV----------------------QDLRALFDKMPIRD-SVSYNTAIAGFANKGFSREA 140
           G                        + +  L  K  I D + + N  IA +   G     
Sbjct: 232 GQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGC 291

Query: 141 LQVFSRMQKDRFEPT--------------------------------DYTHVSALNACAQ 168
            ++FSRM + R + T                                 + + + L+A A 
Sbjct: 292 EKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFAS 351

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           +  L RG ++H   V   L  +V V +AL DMY+K G +D A   F+ M  RN  SWN M
Sbjct: 352 VATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSM 411

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLN-PDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           ISGY ++GQ ++ + LF  M+L G   PD VT   +L AC   G +++  + F  + +
Sbjct: 412 ISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSD 469



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 11/216 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G +      F+ MP+R+S S+N+ I+G+A  G   EAL++F+ M+
Sbjct: 373 DVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMK 432

Query: 149 KDRFEPTDY-THVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
            D   P D+ T V  L+AC+    L  G K          L   +   + + D+  + GE
Sbjct: 433 LDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGE 492

Query: 207 IDKARWLFDRMNNR-NLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           +DK     D+M  + N++ W  ++    + NG+  +      EM L  L P+      +L
Sbjct: 493 LDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEM-LFQLEPENAVNYVLL 551

Query: 265 GACFQT-GRIDDAGRLFHVIKEKD-----NVCWTTM 294
           G  +   GR +D  +    +K+ D        W TM
Sbjct: 552 GNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 587


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 230/639 (35%), Positives = 380/639 (59%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+ ++ + ++GSV   R +F +M   D +S+NT I+G A  G    +L++F  + +    
Sbjct: 336 NSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLL 395

Query: 154 PTDYTHVSALNACAQLLDLR-RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P  +T  S L AC+ L +    G+Q+H   +   +  + FV  AL D+Y+KGG++++A  
Sbjct: 396 PDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAEL 455

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT------------- 259
           LF   +  +L SWN M+ G+  +   ++ + LF  M   G   D++T             
Sbjct: 456 LFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVR 515

Query: 260 ----------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                 +S IL    + G +  A ++F+ I   D+V WTT+I G
Sbjct: 516 LQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISG 575

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             +NG+EE AL  +++M    V+PD+++ +++V +C+ L +L  G+ +H   + L    D
Sbjct: 576 CVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFD 635

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V ++L+DMY KCG  +DA+ +F  M TR+V  WN+MI G AQ+G   EAL  ++++  
Sbjct: 636 PFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKS 695

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             + PD  TF+ VLSAC H+ L      +FDS+   +G+ P ++HY+C+++ L R+  + 
Sbjct: 696 RGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQ 755

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  ++ S+P + ++ ++ TLL+ C ++GD + GE  A  LF ++P ++  Y++LSN+YA
Sbjct: 756 EAEKVVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYA 815

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  +WE+  S R+ MK  NVKK   +SWI++ NKVH FV+ DR+H ET++IY ++  ++K
Sbjct: 816 AANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMK 875

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +++E G+ P+T+  L D +EE+K  ++ YHSEKLA+AY L+K P   T +R++KN+RVCG
Sbjct: 876 RIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTT-LRVIKNLRVCG 934

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K+ S++  R I+LRD+NRFHHF  G CSC D W
Sbjct: 935 DCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/543 (25%), Positives = 245/543 (45%), Gaps = 88/543 (16%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF----- 113
            F+   L++ YAK  ++  AR LFD+MP+RD++ WN ++ A+   G+  ++  LF     
Sbjct: 157 VFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHR 216

Query: 114 -----DKMPIR---------------------------------DSVSYNTAIAGFANKG 135
                D + +R                                 D   +N  ++ +   G
Sbjct: 217 SGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAG 276

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+  F  M K R      T++  L+  A L  L  GKQIHG +V       V V N
Sbjct: 277 EGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVAN 336

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           +  +MY K G ++ AR +F +M   +L+SWN +ISG  ++G  +  + LF ++   GL P
Sbjct: 337 SAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLP 396

Query: 256 DEVTVSNILGACF------------------------------------QTGRIDDAGRL 279
           D+ T++++L AC                                     + G++++A  L
Sbjct: 397 DQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELL 456

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           FH     D   W  M+ G+T +    +AL LF+ M     + D+ + ++   +   L  L
Sbjct: 457 FHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRL 516

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +H   + +    DL V S ++DMY KCG    A  VFN +P+ + V+W ++I+G 
Sbjct: 517 QQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGC 576

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITP 458
            +NG++ +AL  Y ++    ++PD +TF +++ AC      E+G Q H + +       P
Sbjct: 577 VENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDP 636

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-----EM 513
            +     ++++  +  +++ A  L + +  +  +L W+ ++   A  G+ +       EM
Sbjct: 637 FV--MTSLVDMYAKCGNIEDAYGLFRRMNTRSVAL-WNAMIVGLAQHGNAEEALNFFNEM 693

Query: 514 AAR 516
            +R
Sbjct: 694 KSR 696



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 197/408 (48%), Gaps = 36/408 (8%)

Query: 37  NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL--RDIISWN 94
           +D+ L KR  + +  +   P+  ++ N L+  YAK G LF AR LFD  P   RD++++N
Sbjct: 27  SDLILGKRTHAVIVTSGLNPDR-YVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYN 85

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           A+L+A+A +G + D+                           + EA  +F  +++     
Sbjct: 86  AILAAYAHTGELHDVEK-------------------------THEAFHIFRLLRQSVMLT 120

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           T +T       C         + + G  V   L  +VFV  AL ++YAK   I +AR LF
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLF 180

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           DRM  R++V WN+M+  Y++ G   + + LF      GL PD V+V  IL    +    +
Sbjct: 181 DRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFE 240

Query: 275 D--------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                    A +LF    + D   W   +  Y Q G+  +A+  F +M+   V  D  + 
Sbjct: 241 RELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY 300

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
             ++S  A L  L  G+ +HG  V  G D  + V+++ I+MY K G  + A  +F  M  
Sbjct: 301 IVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKE 360

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            +++SWN++I+G A++G +  +L L+  LL+  L PD FT  SVL AC
Sbjct: 361 VDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRAC 408



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/540 (23%), Positives = 229/540 (42%), Gaps = 99/540 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ +A+   +++ R LFD+MP+RD V +N  +  +   G   E L +FS   
Sbjct: 156 DVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFH 215

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P           C  +           + ++  +G        L  + A   +  
Sbjct: 216 RSGLRPD----------CVSV-----------RTILMGVGKKTVFERELEQVRAYATK-- 252

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
               LF   ++ ++  WN  +S YL+ G+  + +D F++M    +  D +T   IL    
Sbjct: 253 ----LFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVA 308

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G ++ A R+F  +KE D + W T
Sbjct: 309 SLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNT 368

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVL 352
           +I G  ++G EE +L LF ++L   + PD+F+I+SV+ +C+ L   Y  G+ VH  A+  
Sbjct: 369 VISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKA 428

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  D  VS+ALID+Y K G  ++A  +F+     ++ SWN+M++G+  +    EAL L+
Sbjct: 429 GIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLF 488

Query: 413 DKLLQENLKPDSFTFVSVLSA--CL------------------HADLFERGQ-------- 444
             + +   K D  TF +   A  CL                  H DLF            
Sbjct: 489 SLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKC 548

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL-----IKSLPHKPNSLIWSTLL 499
               S   V    PS D  A    + G   + ++   L     ++    +P+   ++TL+
Sbjct: 549 GEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLV 608

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS--NMYAACGRWEDVASIRSSMKSKNV 557
             C++   ++ G+    ++ +L      P++M S  +MYA CG  ED   +   M +++V
Sbjct: 609 KACSLLTALEQGKQIHANIMKLN-CAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSV 667



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 112/201 (55%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   + +L  + + G ++  R +F+++P  D V++ T I+G    G   +AL  + +M+
Sbjct: 534 DLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMR 593

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P +YT  + + AC+ L  L +GKQIH  I+  N   + FV  +L DMYAK G I+
Sbjct: 594 LAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIE 653

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LF RMN R++  WN MI G  ++G  ++ ++ F EM+  G+ PD VT   +L AC 
Sbjct: 654 DAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713

Query: 269 QTGRIDDAGRLFHVIKEKDNV 289
            +G   DA + F  +++   V
Sbjct: 714 HSGLTSDAYKNFDSMQKTYGV 734



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 8/199 (4%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN--VCWTTMIVGYTQNG------K 303
           GLNPD    +N++    + G +  A +LF +  + D   V +  ++  Y   G      K
Sbjct: 43  GLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEK 102

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +A  +F  +    +   + ++S +   C    S    + + G AV +G+  D+ V+ A
Sbjct: 103 THEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGA 162

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+++Y K     +A  +F+ MP R+VV WN M+  Y + G   E L L+    +  L+PD
Sbjct: 163 LVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD 222

Query: 424 SFTFVSVLSACLHADLFER 442
             +  ++L       +FER
Sbjct: 223 CVSVRTILMGVGKKTVFER 241



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 156/386 (40%), Gaps = 86/386 (22%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNNRNLVSWNLM 228
           DL  GK+ H  IV   L  + +V N L  MYAK G +  AR LFD    ++R+LV++N +
Sbjct: 28  DLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAI 87

Query: 229 ISGYLKNGQ---PKKCIDLFQEMQLL---------------------------------- 251
           ++ Y   G+    +K  + F   +LL                                  
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 252 ----GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
               GL  D      ++    +  RI +A  LF  +  +D V W  M+  Y + G  ++ 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF+      +RPD  S+ +++    K  +++  ++   +A                  
Sbjct: 208 LGLFSAFHRSGLRPDCVSVRTILMGVGK-KTVFERELEQVRAYA---------------- 250

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
             K  V DD           +V  WN  ++ Y Q G+  EA+  +  +++  +  DS T+
Sbjct: 251 -TKLFVCDD---------DSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY 300

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHG--ITPSLDHYACM----INLLGRSSDVDKAVD 481
           + +LS    A L     NH +    +HG  +    D +  +    IN+  ++  V+ A  
Sbjct: 301 IVILSVV--ASL-----NHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARR 353

Query: 482 LIKSLPHKPNSLI-WSTLLSVCAMKG 506
           +   +  K   LI W+T++S CA  G
Sbjct: 354 MFGQM--KEVDLISWNTVISGCARSG 377



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 79/165 (47%), Gaps = 16/165 (9%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLN-FYEPNTTFLH 62
           H++R A       G    E  +  LV  C+ +  +E  K++ ++ M LN  ++P   F+ 
Sbjct: 590 HQMRLA-------GVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDP---FVM 639

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR--- 119
             L+  YAK G +  A  LF +M  R +  WNA++   A+ G+ ++    F++M  R   
Sbjct: 640 TSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVT 699

Query: 120 -DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
            D V++   ++  ++ G + +A + F  MQK      +  H S L
Sbjct: 700 PDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCL 744


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/643 (37%), Positives = 370/643 (57%), Gaps = 37/643 (5%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +I  N L+ ++ +S  +     LF +MP  DSVSYN  I G++  G   +A+ +F  MQ 
Sbjct: 184 LIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN 243

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
              +PT++T  + L A   L D+  G+QIH  ++  N   NVFV NAL D Y+K   +  
Sbjct: 244 SGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVID 303

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           AR LFD M  ++ VS+N++ISGY  +G+ K   DLF+E+Q    +  +   + +L     
Sbjct: 304 ARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASN 363

Query: 270 T-----------------------------------GRIDDAGRLFHVIKEKDNVCWTTM 294
           T                                   G+ ++A  +F  +  +  V WT M
Sbjct: 364 TLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 423

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I  Y Q G  E+ L LFN+M    V  D+ + +S++ + A +ASL  G+ +H   +  G 
Sbjct: 424 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGF 483

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             ++   SAL+D+Y KCG   DA   F  MP RN+VSWN+MI+ YAQNG+    L  + +
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 543

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++   L+PDS +F+ VLSAC H+ L E G  HF+S++ ++ + P  +HYA ++++L RS 
Sbjct: 544 MVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSG 603

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLS 533
             ++A  L+  +P  P+ ++WS++L+ C +  + +    AA  LF +E + +A PY+ +S
Sbjct: 604 RFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMS 663

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YAA G+WE+V+ +  +M+ + VKK  AYSW+EI ++ H F + DR HP+ E I +++ 
Sbjct: 664 NIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKID 723

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L K ++E G+ P+T   LH+  E+ KV+S+ YHSE+LA+A+ LI  P G +PI +MKN+
Sbjct: 724 MLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEG-SPILVMKNL 782

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R C DCH  +K  S I+GR I +RDS RFHHF  G CSC D W
Sbjct: 783 RACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 240/491 (48%), Gaps = 42/491 (8%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           ++P+T+  + R+ +F  K+G+L  AR LF+KMP ++ +S N ++S + +SG++ + R LF
Sbjct: 48  FDPDTSRSNFRVGNFL-KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLF 106

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D M  R +V++   I G++     +EA ++F +MQ+   EP   T V+ L+ C       
Sbjct: 107 DGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGN 166

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           +  Q+  +I+       + V N L D Y K   +D A  LF  M   + VS+N MI+GY 
Sbjct: 167 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYS 226

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------------------- 274
           K+G  +K ++LF EMQ  GL P E T + +L  C   G  D                   
Sbjct: 227 KDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWN 284

Query: 275 ------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                             DA +LF  + E+D V +  +I GY  +GK + A  LF E+  
Sbjct: 285 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 344

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
                 +F  ++++S  +       G+ +H + +V   D ++LV ++L+DMY KCG  ++
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 404

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F  +  R+ V W +MI+ Y Q G   E L L++K+ Q ++  D  TF S+L A   
Sbjct: 405 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASAS 464

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
                 G+    S     G   ++   + ++++  +   +  AV   + +P + N + W+
Sbjct: 465 IASLSLGK-QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWN 522

Query: 497 TLLSVCAMKGD 507
            ++S  A  G+
Sbjct: 523 AMISAYAQNGE 533



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/423 (24%), Positives = 190/423 (44%), Gaps = 71/423 (16%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + + G   TE  +  ++     ++D+ L +++ S +    +  N  F+ N LL FY+K  
Sbjct: 241 MQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV-FVSNALLDFYSKHD 299

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  AR LFD+MP +D +S+N ++S                               G+A 
Sbjct: 300 SVIDARKLFDEMPEQDGVSYNVIIS-------------------------------GYAW 328

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G  + A  +F  +Q   F+   +   + L+  +  LD   G+QIH + +V      + V
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 388

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            N+L DMYAK G+ ++A  +F  + +R+ V W  MIS Y++ G  ++ + LF +M+   +
Sbjct: 389 GNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV 448

Query: 254 NPDEVTVSNILGAC-----------------------------------FQTGRIDDAGR 278
             D+ T +++L A                                     + G I DA +
Sbjct: 449 IADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQ 508

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
            F  + +++ V W  MI  Y QNG+ E  L  F EM+   ++PD  S   V+S+C+    
Sbjct: 509 TFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGL 568

Query: 339 LYHGQVVHGKAV--VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSM 395
           +  G + H  ++  +  +D      ++++DM C+ G  ++A  +   MP   + + W+S+
Sbjct: 569 VEEG-LWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSV 627

Query: 396 ING 398
           +N 
Sbjct: 628 LNA 630



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 170/358 (47%), Gaps = 39/358 (10%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           N    N +   Y K G + +AR LFD M  R  V+W ++I GY +  Q K+  +LF +MQ
Sbjct: 82  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 141

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
             G  PD VT   +L  C                                    ++ R+D
Sbjct: 142 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 201

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A +LF  + E D+V +  MI GY+++G +E A+ LF EM +  ++P +F+ ++V+ +  
Sbjct: 202 LACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANI 261

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            L  +  GQ +H   +      ++ VS+AL+D Y K     DA  +F+ MP ++ VS+N 
Sbjct: 262 GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNV 321

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAV 453
           +I+GYA +G+   A  L+ +L         F F ++LS   +   +E G Q H  +I  V
Sbjct: 322 IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTI--V 379

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
                 +     ++++  +    ++A  +  +L H+ +++ W+ ++S    KG  + G
Sbjct: 380 TTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISAYVQKGFYEEG 436



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 133/250 (53%), Gaps = 8/250 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +I+  N+L+  +A+ G  ++   +F  +  R +V +   I+ +  KGF  E LQ+F++M+
Sbjct: 385 EILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMR 444

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +        T  S L A A +  L  GKQ+H  I+      NVF  +AL D+YAK G I 
Sbjct: 445 QASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIK 504

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A   F  M +RN+VSWN MIS Y +NG+ +  +  F+EM L GL PD V+   +L AC 
Sbjct: 505 DAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACS 564

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
            +G +++    F+ + +   +      + +++    ++G+  +A  L  EM    + PD+
Sbjct: 565 HSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEM---PIDPDE 621

Query: 324 FSISSVVSSC 333
              SSV+++C
Sbjct: 622 IMWSSVLNAC 631



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           +K+RQA          A +  +  L+     +  + L K+L S +  + +  N  F  + 
Sbjct: 441 NKMRQA-------SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV-FSGSA 492

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           LL  YAK G +  A   F +MP R+I+SWNA++SA+A++G  +     F +M +     D
Sbjct: 493 LLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 552

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQK 149
           SVS+   ++  ++ G   E L  F+ M +
Sbjct: 553 SVSFLGVLSACSHSGLVEEGLWHFNSMTQ 581



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 37/224 (16%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + ++ S +ALL  +A+ GS++D    F +MP R+ VS+N  I+ +A  G +   L+ F  
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 543

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M     +P   + +  L+AC+           H  +V   L    +  N++T +Y    +
Sbjct: 544 MVLSGLQPDSVSFLGVLSACS-----------HSGLVEEGL----WHFNSMTQIY----K 584

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D  R  +             ++    ++G+  +   L  EM    ++PDE+  S++L A
Sbjct: 585 LDPRREHYAS-----------VVDMLCRSGRFNEAEKLMAEMP---IDPDEIMWSSVLNA 630

Query: 267 CF----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
           C     Q      A +LF++ + +D   +  M   Y   G+ E+
Sbjct: 631 CRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWEN 674



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 69/181 (38%), Gaps = 44/181 (24%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +  + V  G D D   S+  +  + K G    A  +F  MP +N VS N MI+GY ++G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 405 DLEALALYDKLLQEN-------------------------------LKPDSFTFVSVLSA 433
             EA  L+D +++                                  +PD  TFV++LS 
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSG 158

Query: 434 CLHADLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           C        G    + I+ V       G    L     +++   +S+ +D A  L K +P
Sbjct: 159 C-------NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211

Query: 488 H 488
            
Sbjct: 212 E 212


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/643 (37%), Positives = 376/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D     AL+ A++  G+V   R +FD +  +D VS+   +A +A   F  E+LQ+F++M+
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              ++P ++T   AL +C  L     GK +HG  + G    ++FV  AL ++YAK GEI 
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEII 289

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ LF+ M   +L+ W+LMI+ Y ++ + K+ +DLF  M+   + P+  T +++L AC 
Sbjct: 290 DAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACA 349

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            +                                   G I+++ +LF  + ++++V W T
Sbjct: 350 SSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNT 409

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +IVGY Q G  E A+ LF  ML  D++P + + SSV+ + A LA+L  G  +H   +   
Sbjct: 410 IIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTM 469

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + D +V+++LIDMY KCG  +DA   F+ M  R+ VSWN+MI GY+ +G  +EAL L+D
Sbjct: 470 YNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFD 529

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +   + KP+  TFV VLSAC +A L  +GQ HF+S+S  + I P ++HY CM+ LLGR 
Sbjct: 530 MMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRL 589

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              D+A+ LI  + ++P+ ++W  LL  C +   +  G + A+H+ E+EP +   +++LS
Sbjct: 590 GRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLS 649

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA  GRW++VA +R  M+ K V+K    SW+E    VH F   D +HP+ ++I   L 
Sbjct: 650 NMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLE 709

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L KK ++AG+ P+   VL D Q++EK + +  HSE+LALAY LI+ P   + IRI+KN+
Sbjct: 710 WLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCS-IRIIKNL 768

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  MK  S ++ R I++RD NRFHHF  G CSC D W
Sbjct: 769 RICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 132/492 (26%), Positives = 231/492 (46%), Gaps = 68/492 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + N LL+ + +S S+QD   LFD+MP  +++S+ T   G++      +AL    R+ 
Sbjct: 69  DLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIF 128

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K+  E   +   + L     +        +H  +       + FV  AL D Y+  G +D
Sbjct: 129 KEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVD 188

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD +  +++VSW  M++ Y +N   ++ + LF +M+++G  P+  T+S  L +C 
Sbjct: 189 VARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCL 248

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              ++G I DA RLF  + + D + W+ 
Sbjct: 249 GLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSL 308

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y Q+ + ++AL LF  M    V P+ F+ +SV+ +CA   SL  G+ +H   +  G
Sbjct: 309 MIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFG 368

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           ++ ++ VS+A++D+Y KCG  +++  +F  +P RN V+WN++I GY Q G    A+ L+ 
Sbjct: 369 LNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFT 428

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHG----ITPSL-DHYA--- 464
            +L+ +++P   T+ SVL A       E G Q H  +I  ++     +  SL D YA   
Sbjct: 429 HMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCG 488

Query: 465 ------------------------CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                                   C  ++ G S +     D+++    KPN L +  +LS
Sbjct: 489 RINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLS 548

Query: 501 VCAMKGDIKHGE 512
            C+  G +  G+
Sbjct: 549 ACSNAGLLYKGQ 560



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 180/381 (47%), Gaps = 37/381 (9%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GK +H  I+      ++F +N L + Y +   +  A  LFD M   N +S+  +  GY +
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 235 NGQPKKCID----LFQE------------------MQL-------------LGLNPDEVT 259
           + Q  + +     +F+E                  M L             LG + D   
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFV 173

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            + ++ A    G +D A  +F  I  KD V WT M+  Y +N   E++L LFN+M     
Sbjct: 174 GTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGY 233

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           +P+ F+IS  + SC  L +   G+ VHG A+    D DL V  AL+++Y K G   DA  
Sbjct: 234 KPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQR 293

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F  MP  +++ W+ MI  YAQ+ +  EAL L+ ++ Q ++ P++FTF SVL AC  +  
Sbjct: 294 LFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVS 353

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            + G+    S     G+  ++     ++++  +  +++ ++ L + LP + N + W+T++
Sbjct: 354 LDLGKQ-IHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDR-NDVTWNTII 411

Query: 500 SVCAMKGDIKHGEMAARHLFE 520
                 GD +       H+ E
Sbjct: 412 VGYVQLGDGERAMNLFTHMLE 432



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 164/370 (44%), Gaps = 41/370 (11%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
            +  ++  C     ++L K++ S + L F   +  F+ N ++  YAK G++  +  LF++
Sbjct: 340 TFASVLQACASSVSLDLGKQIHSCV-LKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEE 398

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +P R+ ++W                               NT I G+   G    A+ +F
Sbjct: 399 LPDRNDVTW-------------------------------NTIIVGYVQLGDGERAMNLF 427

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           + M +   +PT+ T+ S L A A L  L  G QIH   +      +  V N+L DMYAK 
Sbjct: 428 THMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKC 487

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G I+ AR  FD+MN R+ VSWN MI GY  +G   + ++LF  MQ     P+++T   +L
Sbjct: 488 GRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVL 547

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV--C---WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G +      F  + +  ++  C   +T M+    + G+ ++A+ L  E+  +  
Sbjct: 548 SACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQ-- 605

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            P      +++ +C     +  G+V     + +   DD      L +MY   G  D+   
Sbjct: 606 -PSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDD-ATHVLLSNMYATAGRWDNVAF 663

Query: 380 VFNMMPTRNV 389
           V   M  + V
Sbjct: 664 VRKYMQKKKV 673



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 32/155 (20%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           TE  Y+ ++     +  +E   ++ S      Y  +T  + N L+  YAK G++  AR  
Sbjct: 438 TEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTV-VANSLIDMYAKCGRINDARLT 496

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FDKM  RD +SWNA+                               I G++  G S EAL
Sbjct: 497 FDKMNKRDEVSWNAM-------------------------------ICGYSMHGMSMEAL 525

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
            +F  MQ    +P   T V  L+AC+    L +G+
Sbjct: 526 NLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQ 560


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/744 (34%), Positives = 404/744 (54%), Gaps = 57/744 (7%)

Query: 7   LRQAIDTLYSRGQAATE-EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           LR+A++ +    +   E   Y  ++  C  +  ++  +R+ S +  N  E +   L ++L
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV-LGSKL 142

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS------------------VQ 107
           +  Y   G L   R +FDK+    +  WN L++ +A+ G+                  V+
Sbjct: 143 VFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE 202

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
             R LFD++  RD +S+N+ I+G+ + G S + L +F +M          T VS +  C+
Sbjct: 203 SARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCS 262

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
               L  G+ +HG  +  + G  + + N L DMY+K G ++ A  +F+ M  R++VSW  
Sbjct: 263 NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 322

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE-- 285
           MI+GY + G     + LF EM+  G++PD  T++ IL AC  TG +++   + + IKE  
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENK 382

Query: 286 ---------------------------------KDNVCWTTMIVGYTQNGKEEDALILFN 312
                                            KD V W TMI GY++N    +AL LF 
Sbjct: 383 MQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFV 442

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           EM   + +P+  +++ ++ +CA LA+L  GQ +HG  +  G   D  V++AL+DMY KCG
Sbjct: 443 EM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCG 501

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
               A  +F+M+P +++VSW  MI GY  +G   EA+A ++++    ++PD  +F+S+L 
Sbjct: 502 ALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILY 561

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H+ L + G   F+ +     I P  +HYAC+++LL R+ ++ KA   IK +P +P++
Sbjct: 562 ACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDA 621

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            IW  LL  C +  D+K  E  A H+FELEP N G Y++L+N+YA   +WE+V  +R  +
Sbjct: 622 TIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERI 681

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
             + ++K    SWIEI  KVH FV+ D +HP    I   L K   +++E G  P  +  L
Sbjct: 682 GRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYAL 741

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
               + EK  ++C HSEK+A+A+ ++  P G T +R+ KN+RVCGDCH   KF S ++ R
Sbjct: 742 IKADDTEKEMALCGHSEKIAMAFGILSLPPGKT-VRVTKNLRVCGDCHEMAKFMSKMVKR 800

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            IILRDSNRFHHF  G+CSC+ +W
Sbjct: 801 DIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 129/453 (28%), Positives = 216/453 (47%), Gaps = 58/453 (12%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN  I  F   G  R A+++ ++  K   E    T+ S L  CA L  ++ G++IH  I 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
             ++  +  + + L  MY   G++ + R +FD++ N  +  WNL+++GY K G  ++ + 
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           LF+ M+ LG+                  R++ A +LF  + ++D + W +MI GY  NG 
Sbjct: 189 LFKRMRELGIR-----------------RVESARKLFDELGDRDVISWNSMISGYVSNGL 231

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E  L LF +ML   +  D  ++ SVV+ C+    L  G+ +HG A+      +L +++ 
Sbjct: 232 SEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNC 291

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY K G  + A  VF  M  R+VVSW SMI GYA+ G    ++ L+ ++ +E + PD
Sbjct: 292 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPD 351

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSI------SAVHGITPSLDHYA------------- 464
            FT  ++L AC    L E G++  + I      S +      +D YA             
Sbjct: 352 IFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFS 411

Query: 465 -----------CMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511
                       MI    ++S  ++A++L   + +  KPNS+  + +L  CA    ++ G
Sbjct: 412 EMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACILPACASLAALERG 471

Query: 512 EMAARHL----FELEPINAGPYIMLSNMYAACG 540
           +    H+    F L+   A     L +MY  CG
Sbjct: 472 QEIHGHILRNGFSLDRHVANA---LVDMYLKCG 501


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/611 (40%), Positives = 374/611 (61%), Gaps = 18/611 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK-GFSREALQVFSRM 147
           ++IS N +++ H RSG +     +F+ M ++ +V++N+ +AG++N+ G  + A Q+F R+
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                EP  +++   L       D+   +    ++ V +        N +   +++ G +
Sbjct: 64  P----EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTAS----WNTMISGFSQNGMM 115

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV--SNILG 265
           D+AR LF  M  RN VSWN MISGY+++G      DL    QL  + P    V  + ++ 
Sbjct: 116 DQARELFLVMPVRNSVSWNAMISGYVESG------DLDLAKQLFEVAPVRSVVAWTAMIT 169

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              + G+I+ A + F  +  K+ V W  MI GY +N + E+ L LF  M+    RP+  S
Sbjct: 170 GFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSS 229

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           +SSV+  C+ L++L  G+ VH       V  ++   ++L+ MYCKCG  +DAW +F +MP
Sbjct: 230 LSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP 289

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            ++VV+WN+MI+GYAQ+G   +AL L+DK+  E +KPD  TFV+VLSAC HA   + G  
Sbjct: 290 QKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIE 349

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           +F+S+   +G+    DHY C+++LLGR   + +AVDLIK +P KP+S I+ TLL  C + 
Sbjct: 350 YFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIH 409

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            +++  E AA++L  L+P +A  Y+ L+N+YAA  RW+ VA +R SMK   V K   YSW
Sbjct: 410 KNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSW 469

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           IE+ + VH+F S DR HPE   I+E+L++L +K++ AG+ P+ +  LHD  EE+K + + 
Sbjct: 470 IEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILL 529

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+AY LI+ P G TPIR+ KN+RVCGDCH   K+ S I GR II+RD+ RFHHF
Sbjct: 530 RHSEKLAIAYGLIRMPLG-TPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHF 588

Query: 686 VGGNCSCKDNW 696
             G CSC D W
Sbjct: 589 RQGECSCGDYW 599



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 69/212 (32%), Positives = 120/212 (56%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y +SG L  A+ LF+  P+R +++W A+++   + G ++     F++MP+++ V
Sbjct: 134 NAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLV 193

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++N  IAG+     +   L++F RM +  F P   +  S L  C+ L  L+ GKQ+H  I
Sbjct: 194 TWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLI 253

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  N+    +L  MY K G+++ A  LF  M  +++V+WN MISGY ++G  +K +
Sbjct: 254 CKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKAL 313

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            LF +M+  G+ PD +T   +L AC   G +D
Sbjct: 314 YLFDKMRDEGMKPDWITFVAVLSACNHAGFVD 345


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 375/642 (58%), Gaps = 36/642 (5%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           + + + L H Y K  ++  AR LFD+MP RD++ W+A+++ ++R G V++ + LF +M  
Sbjct: 139 SIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRS 198

Query: 119 ----RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                + VS+N  +AGF N GF  EA+ +F  M    F P   T    L A   L D+  
Sbjct: 199 GGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVV 258

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G Q+HG ++   LG + FV +A+ DMY K G + +   +FD +    + S N  ++G  +
Sbjct: 259 GAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSR 318

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
           NG     +++F + +      D+    N+                         V WT++
Sbjct: 319 NGMVDTALEVFNKFK------DQKMELNV-------------------------VTWTSI 347

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I   +QNGK+ +AL LF +M +  V P+  +I S++ +C  +++L HG+ +H  ++  G+
Sbjct: 348 IASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGI 407

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
            DD+ V SALIDMY KCG    A   F+ M   N+VSWN+++ GYA +G+  E + ++  
Sbjct: 408 FDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHM 467

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +LQ   KPD  TF  VLSAC    L E G   ++S+S  HGI P ++HYAC++ LL R  
Sbjct: 468 MLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVG 527

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A  +IK +P +P++ +W  LLS C +  ++  GE+AA  LF LEP N G YI+LSN
Sbjct: 528 KLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSN 587

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA+ G W++   IR  MKSK ++K   YSWIE+ +KVH  ++ D++HP+ + I E+L K
Sbjct: 588 IYASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDK 647

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L  +++++G+ P T  VL D +E++K + +C HSEKLA+   L+    G  P++++KN+R
Sbjct: 648 LNMQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPG-QPLQVIKNLR 706

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +C DCH  +K  S + GR I +RD+NRFHHF  G CSC D W
Sbjct: 707 ICDDCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 137/539 (25%), Positives = 225/539 (41%), Gaps = 118/539 (21%)

Query: 94  NALLSAHARSGSVQDLR---ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
            +LLS +A + S+   +    L   +P     S+++ I  FA        L  FS +   
Sbjct: 39  TSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPL 98

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           R  P  +   SA+ +CA L  L  G+Q+H          +  V ++LT MY K   I  A
Sbjct: 99  RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDA 158

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
           R LFDRM +R++V W+ MI+GY + G  ++  +LF EM+  G+ P+ V+           
Sbjct: 159 RKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVS----------- 207

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                               W  M+ G+  NG  ++A+ +F  ML +   PD  ++S V+
Sbjct: 208 --------------------WNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVL 247

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC------------------- 371
            +   L  +  G  VHG  +  G+  D  V SA++DMY KC                   
Sbjct: 248 PAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIG 307

Query: 372 ------------GVTDDAWTVFNMMPTR----NVVSWNSMINGYAQNGQDLEALALYDKL 415
                       G+ D A  VFN    +    NVV+W S+I   +QNG+DLEAL L+  +
Sbjct: 308 SLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDM 367

Query: 416 LQENLKPDSFTFVSVLSAC-----------LHADLFERG--------------------- 443
               ++P++ T  S++ AC           +H     RG                     
Sbjct: 368 QAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRI 427

Query: 444 ---QNHFDSISAVHGIT--PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
              +  FD +SA++ ++    +  YA    + G++ +  +   ++     KP+ + ++ +
Sbjct: 428 QLARRCFDKMSALNLVSWNAVMKGYA----MHGKAKETMEMFHMMLQSGQKPDLVTFTCV 483

Query: 499 LSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           LS CA  G  + G      M+  H   +EP     Y  L  + +  G+ E+  SI   M
Sbjct: 484 LSACAQNGLTEEGWRCYNSMSEEH--GIEP-KMEHYACLVTLLSRVGKLEEAYSIIKEM 539


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/648 (37%), Positives = 378/648 (58%), Gaps = 49/648 (7%)

Query: 58  TTFLHNRLLHFYAKSGK----LFYARDLFDKMPLRDIISWNALLSAHARSGSV----QDL 109
            T + N L+  Y++       L  AR +FD +P +D  SW  +++ + ++G      + L
Sbjct: 183 VTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELL 242

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           + + + M +   V+YN  I+G+ N G  +EAL++  RM     E  ++T+ S + ACA  
Sbjct: 243 KGMDENMKL---VAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANA 299

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             L+ GKQ+H   V+     +    N+L  +Y K G+ ++AR +F++M  ++LVSWN ++
Sbjct: 300 RLLQLGKQVHA-YVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALL 358

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           SGY+ +G                                    I +A  +F  +KEK+ +
Sbjct: 359 SGYVSSGH-----------------------------------IGEAKLIFKEMKEKNIL 383

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  MI G  +NG  E+ L LF+ M  E   P  ++ S  + SCA L +  +GQ  H + 
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQL 443

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V +G D  L   +ALI MY KCGV ++A  VF  MP  + VSWN++I    Q+G  +EA+
Sbjct: 444 VKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAV 503

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            +Y+++L++ ++PD  TF++VL+AC HA L ++G+ +F+S+  V+ I P  DHYA +I+L
Sbjct: 504 DVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDL 563

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           L RS    +A  +I+SLP KP + IW  LLS C + G+++ G +AA  LF L P + G Y
Sbjct: 564 LCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTY 623

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LSNMYAA G+WE+VA +R  M+ + VKK  A SWIE++ +VH F+ +D +HPE E +Y
Sbjct: 624 MLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVY 683

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEE-EKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           + L  L K+++  G+ P+T  VLHD + +  K   +  HSEK+A+A+ L+K P G T IR
Sbjct: 684 KYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTT-IR 742

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I KN+R CGDCH F +F S ++ R IILRD  RFHHF  G CSC + W
Sbjct: 743 IFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 153/280 (54%), Gaps = 10/280 (3%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM----DLNFYEPNTTFLHNR 64
           + +  + S G    E  Y  ++  C     ++L K++ +++    D +F+        N 
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFSFH------FDNS 325

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K GK   AR +F+KMP +D++SWNALLS +  SG + + + +F +M  ++ +S+
Sbjct: 326 LVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I+G A  GF  E L++FS M+++ FEP DY    A+ +CA L     G+Q H ++V 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVK 445

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                ++   NAL  MYAK G +++A+ +F  M   + VSWN +I+   ++G   + +D+
Sbjct: 446 IGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDV 505

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           ++EM   G+ PD +T   +L AC   G +D   + F+ ++
Sbjct: 506 YEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSME 545


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 376/643 (58%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +   +++ +A+   V++   +FD+MP RD V +NT I+G+A  GF + AL++  RMQ
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P   T VS L A A +  LR G+ IHG  +       V V  AL DMY+K G + 
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRM  + +VSWN MI GY++NG P   +++FQ+M    +    VTV   L AC 
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   R+D A  +F  ++ K  V W  
Sbjct: 389 DLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNA 448

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+GY QNG+  +A+  F +M  ++++PD F++ SV+ + A+L+ L   + +HG  +   
Sbjct: 449 MILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC 508

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V++AL+DMY KCG    A  +F+MM  R+V +WN+MI+GY  +G    AL L++
Sbjct: 509 LDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFE 568

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ +E +KP+  TF+ VLSAC H+ L E G  +F S+   +G+ P++DHY  M++LLGR+
Sbjct: 569 KMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRA 628

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
           + +++A D I+ +P +P   ++  +L  C +  +++ GE AA  +F+L+P + G +++L+
Sbjct: 629 NRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLA 688

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA    W+ VA +R++M+ K ++K   +S +E+ N+VH F S   +HP+ + IY  L 
Sbjct: 689 NIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLE 748

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  +++ AG+ P+T  V HD ++  K + +  HSEKLA+A+ L+    G T I + KN+
Sbjct: 749 TLGNRIKAAGYMPDTNSV-HDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTT-IHLRKNL 806

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S +  R II+RD  RFHHF  G CSC D W
Sbjct: 807 RVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  214 bits (546), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/486 (30%), Positives = 225/486 (46%), Gaps = 72/486 (14%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVS--YNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+S   + GS+ +   +F   PI D +   Y+T + G+A      +A+  F RM+ D   
Sbjct: 115 LVSLFCKFGSLHEAARVFQ--PIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  Y     L  C    DLR+GK+IH +++V     NVF    + +MYAK   +++A  +
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKM 232

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FDRM  R+LV WN +ISGY +NG  K  ++L   MQ  G  PD +T+ +IL A       
Sbjct: 233 FDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSL 292

Query: 268 --------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                         F++               G +  A  +F  +  K  V W +MI GY
Sbjct: 293 RIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGY 352

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG    A+ +F +M+ E V     ++   + +CA L  +  G+ VH     L +  D+
Sbjct: 353 VQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDV 412

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V ++LI MY KC   D A  +F  +  + +VSWN+MI GYAQNG+  EA+  + K+  +
Sbjct: 413 SVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQ 472

Query: 419 NLKPDSFTFVSVLSA--------------------CLHADLFERGQ--NHFDSISAVHGI 456
           N+KPDSFT VSV+ A                    CL  ++F      + +    AVH  
Sbjct: 473 NIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTA 532

Query: 457 TPSLD--------HYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMK 505
               D         +  MI+  G       A++L + +     KPN + +  +LS C+  
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592

Query: 506 GDIKHG 511
           G ++ G
Sbjct: 593 GLVEEG 598



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 171/346 (49%), Gaps = 36/346 (10%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  + +  + ++    + G + +A R+F  I++K +  + TM+ GY +N   +DA+  F
Sbjct: 104 GLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFF 163

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M  + VRP  ++ + ++  C   A L  G+ +H + +V G   ++   + +++MY KC
Sbjct: 164 CRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKC 223

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
            + ++A+ +F+ MP R++V WN++I+GYAQNG    AL L  ++ +E  +PDS T VS+L
Sbjct: 224 RLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSIL 283

Query: 432 SACLHADLFERGQN-HFDSISA-----VHGITPSLDHYA--------------------- 464
            A         G++ H  S+ A     V+  T  +D Y+                     
Sbjct: 284 PAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVV 343

Query: 465 ---CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL---LSVCAMKGDIKHGEMAARHL 518
               MI+   ++ D   A+++ + +  +   +   T+   L  CA  GD++ G    + L
Sbjct: 344 SWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLL 403

Query: 519 FELEPINAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +LE + +   +M  L +MY+ C R +  A I  +++ K +  + A
Sbjct: 404 DQLE-LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNA 448


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/734 (34%), Positives = 401/734 (54%), Gaps = 71/734 (9%)

Query: 1   MKAKHKLRQAIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN 57
           ++  + L +AI  L +R   G       Y +++  C +  D+  AK++   +  +  E N
Sbjct: 3   VQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQN 62

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
              ++N LLH Y + G+L                               Q+ R +FD + 
Sbjct: 63  AHVMNN-LLHVYIECGRL-------------------------------QEARCVFDALV 90

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            +   S+N  IAG+     + +A+++F  M  +  +P   T++  L ACA L  L+ GK+
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKE 150

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  I  G L  +V V  AL  MY K G I++AR +FD + N +++SW +MI  Y ++G 
Sbjct: 151 VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------------------------- 268
            K+   L  +M+  G  P+ +T  +IL AC                              
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTA 270

Query: 269 ------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 ++G IDDA  +F  +K +D V W  MI  + ++G+  +A  LF +M +E  +PD
Sbjct: 271 LVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPD 330

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                S++++CA   +L   + +H  A+  G++ D+ V +AL+ MY K G  DDA  VF+
Sbjct: 331 AIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFD 390

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M  RNVVSWN+MI+G AQ+G   +AL ++ ++    +KPD  TFV+VLSAC HA L + 
Sbjct: 391 RMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDE 450

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G++ + +++ V+GI P + H  CM++LLGR+  + +A   I ++   P+   W  LL  C
Sbjct: 451 GRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSC 510

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              G+++ GE+ A+   +L+P NA  Y++LSN+YA  G+W+ V+ +R+ M+ + ++K   
Sbjct: 511 RTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPG 570

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SWIE+DNK+H F+  D +HPE + I E   K+I+K++  G+ P+T+LVL +   ++K  
Sbjct: 571 RSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKEL 630

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            IC HSEKLA+ Y L+  P G  PIR+ KN+RVC DCH   K  S + GR II+RD+NRF
Sbjct: 631 DICSHSEKLAIVYGLMHTPPG-NPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRF 689

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G CSC D W
Sbjct: 690 HHFKDGVCSCGDYW 703


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 394/726 (54%), Gaps = 41/726 (5%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A + ++S+       +Y  L+    +    + A +L   M L+  +P+   + + LL   
Sbjct: 266 AAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVAS-LLSAC 324

Query: 70  AKSGKLFYARDLFD---KMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           A  G  +  + L     KM +  D+I   +LL  + +   ++     F      + V +N
Sbjct: 325 ASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWN 384

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             +  +   G   E+  +F +MQ +   P  YT+ S L  C  L  L  G+QIH +++  
Sbjct: 385 VMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKS 444

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               NV+V + L DMYAK GE+D AR +  R+   ++VSW  MI+GY ++    + + LF
Sbjct: 445 GFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLF 504

Query: 246 QEMQLLGLNPDEVTVSNILGACF-----------------------------------QT 270
           QEM+  G+  D +  S+ + AC                                    + 
Sbjct: 505 QEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARC 564

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           GR  DA   F  I  KDN+ W  +I G+ Q+G  E+AL +F++M    V  + F+  S V
Sbjct: 565 GRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAV 624

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+ A  A++  G+ +H   +  G D +   S+ LI +Y KCG  +DA   F  MP +NVV
Sbjct: 625 SATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVV 684

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+MI GY+Q+G   EA++L++++ Q  L P+  TFV VLSAC H  L   G ++F S+
Sbjct: 685 SWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSM 744

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S  HG+ P  +HY C+++LLGR++ +  A + I+ +P +P+++IW TLLS C +  +I+ 
Sbjct: 745 SKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEI 804

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE AARHL ELEP ++  Y++LSNMYA  G+W+     R  MK + VKK    SWIE+ N
Sbjct: 805 GEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKN 864

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            +H F   DR HP  E IYE +  L ++  E G+  +   +L+D ++E+K  +   HSEK
Sbjct: 865 SIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEK 924

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ L+   +   PIR++KN+RVC DCH ++KF S I  R I++RD+ RFHHF GG C
Sbjct: 925 LAVAFGLLSLTN-TMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVC 983

Query: 691 SCKDNW 696
           SCKD W
Sbjct: 984 SCKDYW 989



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 246/482 (51%), Gaps = 41/482 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ ++R G++     +F KM  RD +SYN+ I+G A +GFS  ALQ+F +MQ D  +
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L+ACA +    +GKQ+H  ++   +  ++ +  +L D+Y K  +I+ A   
Sbjct: 312 PDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEY 371

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F      N+V WN+M+  Y + G   +   +F +MQ+ GL P++ T  +IL  C      
Sbjct: 372 FLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGAL 431

Query: 268 --------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                         FQ                G +D A  +   ++E+D V WT MI GY
Sbjct: 432 DLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGY 491

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           TQ+    +AL LF EM ++ +R D    SS +S+CA + +L  GQ +H ++ + G  +DL
Sbjct: 492 TQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDL 551

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +AL+ +Y +CG   DA+  F  +  ++ +SWN++I+G+AQ+G   EAL ++ ++ Q 
Sbjct: 552 SIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQA 611

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++ + FTF S +SA  +    ++G+    ++    G     +    +I L  +   ++ 
Sbjct: 612 GVEANLFTFGSAVSATANTANIKQGK-QIHAMMIKTGYDSETEASNVLITLYSKCGSIED 670

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYA 537
           A      +P K N + W+ +++  +  G   +G  A     E++ +   P ++    + +
Sbjct: 671 AKREFFEMPEK-NVVSWNAMITGYSQHG---YGSEAVSLFEEMKQLGLMPNHVTFVGVLS 726

Query: 538 AC 539
           AC
Sbjct: 727 AC 728



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 128/448 (28%), Positives = 221/448 (49%), Gaps = 37/448 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  ++++G V   + +F+++ ++DSVS+   I+G +  G   EA+ +F +M K    
Sbjct: 151 NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI 210

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT Y   S L+AC ++   + G+Q+HG IV   L    FV NAL  +Y++ G +  A  +
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR- 272
           F +M+ R+ +S+N +ISG  + G   + + LF++MQL  + PD VTV+++L AC   G  
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAG 330

Query: 273 ----------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                             I+ A   F   + ++ V W  M+V Y
Sbjct: 331 YKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAY 390

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G   ++  +F +M  E + P++++  S++ +C  L +L  G+ +H + +  G   ++
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV 450

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S LIDMY K G  D A  +   +   +VVSW +MI GY Q+    EAL L+ ++  +
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++ D+  F S +SAC       +GQ    + S + G +  L     +++L  R      
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQ-QIHAQSYISGYSEDLSIGNALVSLYARCGRAQD 569

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           A    + +  K N + W+ L+S  A  G
Sbjct: 570 AYLAFEKIDAKDN-ISWNALISGFAQSG 596



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 213/444 (47%), Gaps = 44/444 (9%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  +   G V +   LFD +P  +   +N  I+G   K  + + L +FS M  +   P 
Sbjct: 51  LIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPD 110

Query: 156 DYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           + T  S L AC+      +  +QIH KI+    G +  V N L D+Y+K G +D A+ +F
Sbjct: 111 ESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVF 170

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---- 270
           +R+  ++ VSW  MISG  +NG+  + I LF +M    + P     S++L AC +     
Sbjct: 171 ERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFK 230

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G +  A ++F  +  +D + + ++I G  
Sbjct: 231 LGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLA 290

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q G  + AL LF +M  + ++PD  +++S++S+CA + + Y G+ +H   + +G+  DL+
Sbjct: 291 QRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLI 350

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +  +L+D+Y KC   + A   F    T NVV WN M+  Y Q G   E+  ++ ++  E 
Sbjct: 351 IEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEG 410

Query: 420 LKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYAC--MINLLGRSSDV 476
           L P+ +T+ S+L  C      + G Q H   I +        + Y C  +I++  +  ++
Sbjct: 411 LMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGF----QFNVYVCSVLIDMYAKHGEL 466

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLS 500
           D A  +++ L  + + + W+ +++
Sbjct: 467 DTARGILQRL-REEDVVSWTAMIA 489



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 182/387 (47%), Gaps = 38/387 (9%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T++     C     L   K++H +I      G   + + L D+Y   GE+D A  LFD +
Sbjct: 12  TYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDI 71

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------FQT- 270
            + N+  WN +ISG L      + + LF  M    + PDE T +++L AC      FQ  
Sbjct: 72  PSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVT 131

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +D A  +F  +  KD+V W  MI G +QN
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+E++A++LF +M    V P  +  SSV+S+C K+     G+ +HG  V  G+  +  V 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+ +Y + G    A  +F+ M  R+ +S+NS+I+G AQ G    AL L++K+  + +K
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMK 311

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           PD  T  S+LSAC       +G+    S     G++  L     +++L  +  D++ A +
Sbjct: 312 PDCVTVASLLSACASVGAGYKGK-QLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHE 370

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDI 508
              +     N ++W+ +L      G++
Sbjct: 371 YFLT-TETENVVLWNVMLVAYGQLGNL 396


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/643 (38%), Positives = 379/643 (58%), Gaps = 43/643 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +A+ G +   R++F  M  +DSVS+N+ I G        +A++ ++ M+K    
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+++  +SAL++CA L  +  G+Q HG+ +   L  +V V N L  +YA+   + + + +
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQP-KKCIDLFQEMQLLGLNPDEVTVSNILG------- 265
           F  M  R+ VSWN +I     +G    + I++F EM   G +P+ VT  N+L        
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 266 ---------------------------ACF-QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
                                      AC+ ++G +++   +F  + E+ D V W +MI 
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMIS 381

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  N     A+ L   M+    R D F+ ++V+S+CA +A+L  G  VH  A+   ++ 
Sbjct: 382 GYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLES 441

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D+++ SAL+DMY KCG  D A   FN+MP RN+ SWNSMI+GYA++G    AL L+ ++ 
Sbjct: 442 DVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMK 501

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
                PD  TFV VLSAC H  L + G  +F S++ V+G+ P ++HY+CM++LLGR+ ++
Sbjct: 502 LSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGEL 561

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM---AARHLFELEPINAGPYIMLS 533
           DK  + I  +P KPN LIW T+L  C  +G+ +  E+   AA  LF ++P NA  Y++LS
Sbjct: 562 DKIENFINKMPIKPNILIWRTVLGACC-RGNGRKTELGRRAAEMLFNMDPQNAVNYVLLS 620

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA+ G+WED+A  R +M+   VKK A  SW+ + + VH FV+ D +HPE  +IY +L 
Sbjct: 621 NMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLK 680

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L KK+++AG+ P  K  L+D + E K + + YHSEKLA+A+ L +      PIRIMKN+
Sbjct: 681 ELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEKLAVAFVLTRNSG--LPIRIMKNL 738

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S ++ R+I+LRDSNRFHHF  G CSC+D W
Sbjct: 739 RVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCSCRDYW 781



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 234/492 (47%), Gaps = 47/492 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L++ + R G     R LFD+MP R+ V++   I+G+   G   +A  V   M 
Sbjct: 34  DLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMI 93

Query: 149 KDRFEPTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGE 206
            + F P  +   SA+ AC + +L  R+G+Q+HG  +   L    V V N L +MYAK G+
Sbjct: 94  FEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGD 153

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD---------- 256
           ID AR +F  M +++ VSWN MI+G  +N   +  +  +  M+  GL P           
Sbjct: 154 IDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSS 213

Query: 257 ------------------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCW 291
                                   +V+VSN L A + +T R+ +  ++F  + E+D V W
Sbjct: 214 CASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSW 273

Query: 292 TTMIVGYTQNGKE-EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            T+I     +G    +A+ +F EM+     P++ +  +++++ + L++      +H   +
Sbjct: 274 NTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALIL 333

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEAL 409
              V DD  + +AL+  Y K G  ++   +F+ M   R+ VSWNSMI+GY  N    +A+
Sbjct: 334 KYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAM 393

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMIN 468
            L   ++Q   + D FTF +VLSAC      E G   H  +I A   +   +   + +++
Sbjct: 394 DLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRAC--LESDVVIGSALVD 451

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +  +   +D A      +P + N   W++++S  A  G   HG+ A R    ++     P
Sbjct: 452 MYSKCGRIDYASRFFNLMPVR-NLYSWNSMISGYARHG---HGDNALRLFTRMKLSGQLP 507

Query: 529 -YIMLSNMYAAC 539
            +I    + +AC
Sbjct: 508 DHITFVGVLSAC 519



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 209/464 (45%), Gaps = 84/464 (18%)

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
            H  ++      ++F+ N L ++Y + G+   AR LFD M +RN V+W  +ISGY +NG 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------------------------- 270
           P+    + +EM   G  P+     + + AC ++                           
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 271 ----------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                     G ID A  +F ++ +KD+V W +MI G  QN   EDA+  +N M    + 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P  F++ S +SSCA L  +  GQ  HG+ + LG+D D+ VS+ L+ +Y +     +   V
Sbjct: 202 PSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKV 261

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDL-EALALYDKLLQENLKPDSFTFVSVLSAC----- 434
           F+ M  R+ VSWN++I   A +G  + EA+ ++ ++++    P+  TF+++L+       
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 435 ------LHADLFERGQNHFDSIS----AVHGITPSLDHYACMINLLGRSSD--------- 475
                 +HA + +      ++I     A +G +  +++   + + +    D         
Sbjct: 322 SKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMIS 381

Query: 476 -------VDKAVDLIKSLPHKPNSL---IWSTLLSVCAMKGDIKHG----EMAARHLFEL 521
                  + KA+DL+  +  +   L    ++T+LS CA    ++ G      A R   E 
Sbjct: 382 GYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEVHACAIRACLES 441

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
           + +       L +MY+ CGR +  +   + M  +N+     YSW
Sbjct: 442 DVVIGSA---LVDMYSKCGRIDYASRFFNLMPVRNL-----YSW 477



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 7/165 (4%)

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           A+L+H  V+       G D DL + + LI++Y + G    A  +F+ MP RN V+W  +I
Sbjct: 19  ANLFHLNVLKH-----GFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLI 73

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           +GY QNG   +A  +  +++ E   P+ F F S + AC  + L+ R        +   G+
Sbjct: 74  SGYTQNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGL 133

Query: 457 TPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
             +       +IN+  +  D+D A  +   +  K +S+ W+++++
Sbjct: 134 NDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDK-DSVSWNSMIT 177



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 99/214 (46%), Gaps = 8/214 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G +      F+ MP+R+  S+N+ I+G+A  G    AL++F+RM+
Sbjct: 442 DVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMK 501

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEI 207
                P   T V  L+AC+ +  +  G +    +  V  L   V   + + D+  + GE+
Sbjct: 502 LSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGEL 561

Query: 208 DKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           DK     ++M  + N++ W  ++    +    K  +       L  ++P       +L  
Sbjct: 562 DKIENFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSN 621

Query: 267 CFQT-GRIDDAGRLFHVIKE----KDNVC-WTTM 294
            + + G+ +D  R    ++E    K+  C W TM
Sbjct: 622 MYASGGKWEDMARTRRAMREAAVKKEAGCSWVTM 655


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 268/778 (34%), Positives = 411/778 (52%), Gaps = 117/778 (15%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
            +++    A+ + +H+  + ++P    + NRL+  Y KS  + YAR LFDK+P  DI++ 
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLII-NRLIDHYCKSFNIPYARYLFDKIPKPDIVAA 65

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
             +LSA++ +G+++    LF+  P  IRD+VSYN  I  F++      ALQ+F +M++  
Sbjct: 66  TTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG 125

Query: 152 FEPTDYTHVSALNACAQLLDLR-RGKQIHGKIVVGNLGGNVFVRNALTDMY--------- 201
           F P  +T  S L A + + D     +Q+H ++          V NAL   Y         
Sbjct: 126 FVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLV 185

Query: 202 ---------------AKGGEIDKARW------------------LFDRMNNRNLVSWNLM 228
                          A  G  D+  W                  L + M +   V+WN M
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR----------- 272
           ISGY+  G  ++  DL + M  LG+  DE T ++++ A      F  GR           
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVV 305

Query: 273 -----------------------IDDAGRLFHVIKEKDNVCW------------------ 291
                                  + +A R+F  +  KD V W                  
Sbjct: 306 QPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANS 365

Query: 292 -------------TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
                        T MI G  QNG  E+ L LFN+M  E + P  ++ +  ++SC+ L S
Sbjct: 366 IFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGS 425

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L +GQ +H + + LG D  L V +ALI MY +CG+ + A TVF  MP  + VSWN+MI  
Sbjct: 426 LDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAA 485

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            AQ+G  ++A+ LY+K+L+E++ PD  TF+++LSAC HA L + G+++FD++   +GITP
Sbjct: 486 LAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITP 545

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             DHY+ +I+LL R+    +A ++ +S+P +P + IW  LL+ C + G+++ G  AA  L
Sbjct: 546 EEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRL 605

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            EL P   G YI LSNMYAA G+W++VA +R  M+ + VKK    SWIE++N VH F+ +
Sbjct: 606 LELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVD 665

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D  HPE   +Y  L +L+ ++++ G+ P+TK VLHD + E+K  ++  HSEKLA+ Y ++
Sbjct: 666 DAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIM 725

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K P G T IR+ KN+R+CGDCH   K+ S ++ R II+RD  RFHHF  G CSC + W
Sbjct: 726 KLPLGAT-IRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 155/281 (55%), Gaps = 7/281 (2%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL---HNRLLHFYA 70
           ++S G    E  YT ++   +      + +++ +++     +P+  F+   +N L+  Y 
Sbjct: 265 MHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYT 324

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + GKL  AR +FDKMP++D++SWNA+LS    +  +++  ++F +MP+R  +++   I+G
Sbjct: 325 RCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISG 384

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
            A  GF  E L++F++M+ +  EP DY +  A+ +C+ L  L  G+Q+H +I+      +
Sbjct: 385 LAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSS 444

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V NAL  MY++ G ++ A  +F  M   + VSWN MI+   ++G   + I L+++M  
Sbjct: 445 LSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLK 504

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
             + PD +T   IL AC   G + +    F  ++    VC+
Sbjct: 505 EDILPDRITFLTILSACSHAGLVKEGRHYFDTMR----VCY 541


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/624 (37%), Positives = 374/624 (59%), Gaps = 40/624 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F+KMP R++V++   I      G++ EA+ +F  M    +EP  +T    ++ACA +  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMEL 286

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLM 228
           L  G+Q+H + +   L  +  V   L +MYAK    G +  AR +FD++ + N+ SW  M
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 229 ISGYL-KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------- 268
           I+GY+ K G  ++ +DLF+ M L  + P+  T S+ L AC                    
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 269 ----------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           ++GRIDDA + F ++ EK+ + + T+I  Y +N   E+AL LFN
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+  + +    F+ +S++S  A + ++  G+ +H + +  G+  +  V +ALI MY +CG
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A+ VF  M  RNV+SW S+I G+A++G   +AL L+ K+L+E ++P+  T+++VLS
Sbjct: 527 NIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLS 586

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H  L   G  HF S+   HG+ P ++HYACM+++LGRS  + +A+  I S+P+K ++
Sbjct: 587 ACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADA 646

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+W T L  C + G+++ G+ AA+ + E EP +   YI+LSN+YA+  +W++V++IR +M
Sbjct: 647 LVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAM 706

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K KN+ K A  SW+E++NKVHKF   D +HP+   IY+EL  L  K+++ G+ PN   VL
Sbjct: 707 KEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVL 766

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EE+K K +  HSEK+A+A+ LI     + PIR+ KN+R+CGDCH  +K+ S   GR
Sbjct: 767 HDVEEEQKEKLLFQHSEKIAVAFGLISTSK-MKPIRVFKNLRICGDCHSAIKYISMATGR 825

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            II+RD+NRFHH   G CSC + W
Sbjct: 826 EIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 138/468 (29%), Positives = 233/468 (49%), Gaps = 55/468 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D ++ N+L+S +++ G  +   ++F  M   RD +S++  ++ FAN      AL  F  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKG-G 205
            ++ + P +Y   +A  AC+    +  G  I G +V  G L  +V V   L DM+ KG G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           ++  A  +F++M  RN V+W LMI+  ++ G   + IDLF EM L G  PD  T+S ++ 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVIS 279

Query: 266 ACFQT--------------------------------------GRIDDAGRLFHVIKEKD 287
           AC                                         G +  A ++F  I + +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 288 NVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
              WT MI GY Q G  +E+AL LF  M+   V P+ F+ SS + +CA LA+L  G+ V 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
             AV LG      V+++LI MY + G  DDA   F+++  +N++S+N++I+ YA+N    
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYAC 465
           EAL L++++  + +   +FTF S+LS         +G Q H   I +  G+   L+   C
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS--GL--KLNQSVC 515

Query: 466 --MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +I++  R  +++ A  + + +  + N + W+++++     G  KHG
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIIT-----GFAKHG 557



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 224/558 (40%), Gaps = 106/558 (18%)

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           N G   +A+     M      P   T+   L  C +      G  +H K+   +L  +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 193 VRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
             N+L  +Y+K G+ +KA  +F  M ++R+L+SW+ M+S +  N    + +  F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 252 GLNPDEVTVSNILGAC-----------------------------------FQTGRID-- 274
           G  P+E   +    AC                                   F  GR D  
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A ++F  + E++ V WT MI    Q G   +A+ LF EM+     PD+F++S V+S+CA
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACA 282

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD---AWTVFNMMPTRNVVS 391
            +  L  GQ +H +A+  G+  D  V   LI+MY KC V      A  +F+ +   NV S
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 392 WNSMINGYAQ-NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           W +MI GY Q  G D EAL L+  ++  ++ P+ FTF S L AC +      G+  F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF--- 399

Query: 451 SAVHGITPSLDHYACMINLL-------GRSSDVDKAVDL--------------------- 482
              H +        C+ N L       GR  D  KA D+                     
Sbjct: 400 --THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 483 ----------IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIM 531
                     I+      ++  +++LLS  A  G I  GE + AR +     +N      
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV--HKFVSEDRTHPETEIIY 589
           L +MY+ CG  E    +   M+ +NV      SW  I      H F ++           
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNV-----ISWTSIITGFAKHGFATQAL--------- 563

Query: 590 EELSKLIKKLQEAGFSPN 607
               +L  K+ E G  PN
Sbjct: 564 ----ELFHKMLEEGVRPN 577



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 189/419 (45%), Gaps = 52/419 (12%)

Query: 33  CTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C  +  + + +++ +H + L F   N   + N L+  YA+SG++  AR  FD +  +++I
Sbjct: 386 CANLAALRIGEQVFTHAVKLGFSSVNC--VANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           S+N ++ A+A++ +                               S EAL++F+ ++   
Sbjct: 444 SYNTVIDAYAKNLN-------------------------------SEEALELFNEIEDQG 472

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              + +T  S L+  A +  + +G+QIH +++   L  N  V NAL  MY++ G I+ A 
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ M +RN++SW  +I+G+ K+G   + ++LF +M   G+ P+ VT   +L AC   G
Sbjct: 533 QVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVG 592

Query: 272 RIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +++  + F  +  +  V      +  M+    ++G   +A+   N M     + D    
Sbjct: 593 LVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSM---PYKADALVW 649

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            + + +C    +L  G+    K ++     D      L ++Y      D+   +   M  
Sbjct: 650 RTFLGACRVHGNLELGKHA-AKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKE 708

Query: 387 RNVV-----SW----NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           +N++     SW    N +   Y  +    +A  +YD+L   ++K     +V  L   LH
Sbjct: 709 KNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLH 767



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 101/212 (47%), Gaps = 5/212 (2%)

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T  ++    NG+   A+     M+ +   PD  + S  +  C +  S   G +VH K   
Sbjct: 35  TGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQ 94

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALA 410
             +  D +  ++LI +Y KCG  + A ++F +M  +R+++SW++M++ +A N     AL 
Sbjct: 95  SDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALL 154

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
            +  +++    P+ + F +   AC  A+    G + F  +     +   +     +I++ 
Sbjct: 155 TFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMF 214

Query: 471 --GRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
             GR  D+  A  + + +P + N++ W+ +++
Sbjct: 215 VKGR-GDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/646 (36%), Positives = 376/646 (58%), Gaps = 48/646 (7%)

Query: 63  NRLLHFYAKSGK--------LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           N LL  Y K           +  AR LFD+MP RD ++W  +++ + R+  +   R +F+
Sbjct: 188 NALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE 247

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
            M      ++N  I+G+ + G  +EAL +  +M+    +  D T+ + ++ACA +   + 
Sbjct: 248 AMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQM 307

Query: 175 GKQIHGKIVVGNLGGN----VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           GKQ+H  I+   L  N    + V NAL  +Y K  ++D+AR +F  M  RN+++WN ++S
Sbjct: 308 GKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILS 367

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY+                                     GR+++A   F  +  K+ + 
Sbjct: 368 GYV-----------------------------------NAGRMEEAKSFFEEMPVKNLLT 392

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            T MI G  QNG  ++ L LF +M  +   P  F+ +  +++C+ L +L +G+ +H + V
Sbjct: 393 LTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLV 452

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            LG +  L V +A+I MY KCGV + A +VF  MP+ ++VSWNSMI    Q+G  ++A+ 
Sbjct: 453 HLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIE 512

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+D++L+E + PD  TF++VL+AC HA L E+G+++F+S+   +GITP  DHYA M++L 
Sbjct: 513 LFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLF 572

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
            R+     A  +I S+P KP + +W  LL+ C + G++  G  AA  LF+L P N G Y+
Sbjct: 573 CRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYV 632

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA  GRW +VA +R  M+ + V+K  A SWIE++NKVH F+ +D  HPE   +Y 
Sbjct: 633 LLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYR 692

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            L +L  ++++ G+ P+TK VLHD + E+K  ++  HSEKLA+ + ++K P G T +R+ 
Sbjct: 693 YLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGAT-VRVF 751

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KNIR+CGDCH   KF S +  R II+RD  RFHHF  G+CSC+D W
Sbjct: 752 KNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 165/601 (27%), Positives = 269/601 (44%), Gaps = 126/601 (20%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           LA+ + +HM  + ++P   FL NRLL  Y KS  L YAR LF+++P  D I+   L++A+
Sbjct: 31  LARAVHAHMIASGFKPRGHFL-NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAY 89

Query: 101 ARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
              G+++  R +F+  P+  RDSV YN  I G+A+ G    AL++F  M++D F P D+T
Sbjct: 90  CALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFT 149

Query: 159 HVSALNACAQLL-DLRRGKQIHGKIVVGNLGG-NVFVRNALTDMYAKGGE--------ID 208
             S L+A    + + ++  Q+H  +V   +G  +  V NAL  +Y K           + 
Sbjct: 150 FTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMV 209

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR LFD M  R+ ++W  MI+GY++N                                 
Sbjct: 210 SARKLFDEMPKRDELTWTTMITGYVRNDD------------------------------- 238

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
               ++ A  +F  + E     W  MI GY   G  ++AL L  +M    ++ D  + ++
Sbjct: 239 ----LNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTT 294

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDD----LLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++S+CA + S   G+ VH   +   ++ +    L VS+ALI +YCK    D+A  +F  M
Sbjct: 295 IISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAM 354

Query: 385 PTRNVVSWNSMINGY-------------------------------AQNGQDLEALALYD 413
           P RN+++WN++++GY                               AQNG   E L L+ 
Sbjct: 355 PVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFK 414

Query: 414 KLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQ-------NHFDSISAVHG 455
           ++  +  +P  F F   L+AC           LHA L   G        N   S+ A  G
Sbjct: 415 QMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCG 474

Query: 456 IT----------PSLD--HYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLS 500
           +           PS+D   +  MI  LG+     KA++L   +  +   P+ + + T+L+
Sbjct: 475 VVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLT 534

Query: 501 VCAMKGDIKHGEMAARHLFE--LEPINAGP----YIMLSNMYAACGRWEDVASIRSSMKS 554
            C+  G ++ G    RH F   LE     P    Y  + +++   G +     +  SM S
Sbjct: 535 ACSHAGLVEKG----RHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPS 590

Query: 555 K 555
           K
Sbjct: 591 K 591



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 168/304 (55%), Gaps = 8/304 (2%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF---LHNRLLHFYAKSGKLFYARDLF 82
           YT ++  C  V   ++ K++ +++  N   PN +F   + N L+  Y K+ K+  AR +F
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIF 351

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
             MP+R+II+WNA+LS +  +G +++ ++ F++MP+++ ++    I+G A  GF  E L+
Sbjct: 352 YAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLK 411

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F +M+ D FEP D+    AL AC+ L  L  G+Q+H ++V      ++ V NA+  MYA
Sbjct: 412 LFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYA 471

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G ++ A  +F  M + +LVSWN MI+   ++G   K I+LF +M   G+ PD +T   
Sbjct: 472 KCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLT 531

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC   G ++     F+ + E   +      +  M+  + + G    A I+ + M S+
Sbjct: 532 VLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSK 591

Query: 318 DVRP 321
              P
Sbjct: 592 PGAP 595


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 264/707 (37%), Positives = 402/707 (56%), Gaps = 58/707 (8%)

Query: 39   VELAKRLQSHMDLNFYEPN------TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
            VEL   ++  ++LN   PN      T F    +L    + G   +A  +   +    I  
Sbjct: 370  VELFMEMKDSVELN---PNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAI 426

Query: 93   WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF-ANKGFSREALQVFSRMQKDR 151
             N L++ +A+ G++ D   +F  M  +DSV++N+ I G   NK F  EA++ F  M++  
Sbjct: 427  GNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQF-LEAVKTFQEMRRTE 485

Query: 152  FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              P+++T +SAL++CA L  +  G+Q+H + +   L  +V V NAL  +Y + G + + +
Sbjct: 486  LYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQ 545

Query: 212  WLFDRMNNRNLVSWNLMISGYLKNGQPK--KCIDLFQEMQLLGLNPDEVT---------- 259
              F  M + + VSWN +I G L + +P   + ++ F  M   G +P+ VT          
Sbjct: 546  KAFSLMLDYDHVSWNSLI-GALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSS 604

Query: 260  ------------------------VSNILGACFQTGRIDDAGRLFHVIKE----KDNVCW 291
                                    + N L AC+  G+  D G   ++       +D V W
Sbjct: 605  LSLHELGKQIHALVLKRNVAADTAIENALLACY--GKCGDMGYCENIFSRMSDRQDEVSW 662

Query: 292  TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +MI GY  N     A+ +   M+ +  R D F+ ++V+S+CA +A+L  G  VHG +V 
Sbjct: 663  NSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVR 722

Query: 352  LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
              ++ D+++ SAL+DMY KCG  D A   F MMP RN+ SWNSMI+GYA++G   ++L L
Sbjct: 723  ACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDL 782

Query: 412  YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
            + ++  +   PD  TFV VLSAC HA L   G +HFDS+S ++G+ P ++H++CM++LLG
Sbjct: 783  FAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLG 842

Query: 472  RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINAGPY 529
            R  +++K  D +  +P KPN LIW T+L  C  A   +   G  AA  L E+EP NA  Y
Sbjct: 843  RVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNY 902

Query: 530  IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
            I+LSNMYA+ G+W+DVA  R +M+   VKK A  SW+ + + VH FV+ D++HPE ++IY
Sbjct: 903  ILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIY 962

Query: 590  EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            E+L +L  K++ AG+ P T+  L+D + E K + + YHSEK+A+A+ L +      PIRI
Sbjct: 963  EKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVAFVLTRPSK--MPIRI 1020

Query: 650  MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +KN+RVCGDCH   K+ S I+ R I+LRDSNRFHHF  G CSC D W
Sbjct: 1021 LKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 121/404 (29%), Positives = 194/404 (48%), Gaps = 52/404 (12%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           LF    + D+   N L++ +AR G +   R +FD+MP+R+ VS++  I+G+       EA
Sbjct: 99  LFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEA 158

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALT 198
            ++F +M  D F P  Y   S + AC +  +  L+ G QIHG +       +V   N L 
Sbjct: 159 CELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLI 218

Query: 199 DMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL----GL 253
            MY    G +D AR  FD +  RNLVS N MIS Y + G      D+F  MQ      GL
Sbjct: 219 SMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGL 278

Query: 254 NPDEVTVSNILGAC-------------------------------------FQTGRIDDA 276
            P+E T  +++ A                                       + G I  A
Sbjct: 279 KPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYA 338

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAK 335
             +F  +  ++ V    +I+G  +  + E+A+ LF EM  S ++ P+ + I  ++++  +
Sbjct: 339 KNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMI--ILTAFPE 396

Query: 336 LASLYHGQ----VVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
              L +G+     VH   +  G ++  + + + LI+MY KCG  +DA  VF +M  ++ V
Sbjct: 397 FHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSV 456

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           +WNSMI G  QN Q LEA+  + ++ +  L P +FT +S LS+C
Sbjct: 457 TWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSC 500



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 152/565 (26%), Positives = 264/565 (46%), Gaps = 95/565 (16%)

Query: 87  LRDIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           + D+ + N L+S +  + G V   R  FD +  R+ VS N+ I+ +  +G +  A  +FS
Sbjct: 208 VNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFS 267

Query: 146 RMQK----DRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTD 199
            MQK    D  +P +YT  S ++A   L +  L   +Q+  ++       +++V +AL  
Sbjct: 268 TMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEV 258
            +AK G I  A+ +F +M+ RN+VS N +I G ++  + ++ ++LF EM+  + LNP+  
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSY 387

Query: 259 TV---------------------------SNILGACF-----------QTGRIDDAGRLF 280
            +                           S +L A             + G I+DA  +F
Sbjct: 388 MIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVF 447

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            ++  KD+V W +MI G  QN +  +A+  F EM   ++ P  F++ S +SSCA L  + 
Sbjct: 448 RLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWIS 507

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H + + LG+D D+ VS+AL+ +Y +CG   +    F++M   + VSWNS+I   A
Sbjct: 508 VGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALA 567

Query: 401 QNGQD-LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHF----DSISAVH 454
            +    LEA+  +  +++    P+  TF+++L+A     L E G Q H      +++A  
Sbjct: 568 DSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADT 627

Query: 455 GITPSL--------DHYACMINLLGRSSD-------------------VDKAVDLIKSLP 487
            I  +L        D   C  N+  R SD                   + KA+D++  + 
Sbjct: 628 AIENALLACYGKCGDMGYCE-NIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMM 686

Query: 488 HKPNSL---IWSTLLSVCAMKGDIKHG----EMAARHLFELEPINAGPYIMLSNMYAACG 540
            K   L    ++T+LS CA    ++ G      + R   E + +       L +MYA CG
Sbjct: 687 QKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSA---LVDMYAKCG 743

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSW 565
           R +  +     M ++N+     YSW
Sbjct: 744 RIDYASRFFEMMPARNL-----YSW 763



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 174/379 (45%), Gaps = 56/379 (14%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           +  +++H ++       ++F+ N L ++YA+ G++   R +FD M  RNLVSW+ +ISGY
Sbjct: 90  KDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGY 149

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR-------------------- 272
            +N  P +  +LF++M   G  P+     +++ AC + G                     
Sbjct: 150 TRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN 209

Query: 273 ------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN-- 312
                             +D A R F  I  ++ V   +MI  Y Q G    A  +F+  
Sbjct: 210 DVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTM 269

Query: 313 --EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----GVDDDLLVSSALID 366
             E++ + ++P++++  S++S+   LA+   G V+  + +      G   DL V SAL+ 
Sbjct: 270 QKEVMGDGLKPNEYTFGSLISATCSLAN--SGLVLLEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSF 425
            + K G    A  +F  M  RNVVS N +I G  +  +  EA+ L+ ++     L P+S+
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSY 387

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRSSDVDKAVD 481
               +L+A     + E G+     + A    +  L+        +IN+  +   ++ A  
Sbjct: 388 MI--ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACV 445

Query: 482 LIKSLPHKPNSLIWSTLLS 500
           + + + +K +S+ W+++++
Sbjct: 446 VFRLMDNK-DSVTWNSMIT 463


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/643 (36%), Positives = 375/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D  S NAL+  +A+ G ++D  ++FD++   D VS+N  IAG     +   AL++   M 
Sbjct: 145 DAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMN 204

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K    P  +T  SAL ACA +     G+Q+H  ++  ++G + F+   L DMY+K   +D
Sbjct: 205 KSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMD 264

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-- 266
            AR +F  M  R++++WN +ISG+ +N + ++   LF  M   G+  ++ T+S +L +  
Sbjct: 265 DARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIA 324

Query: 267 -------CFQT--------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
                  C Q                           G ++DA R+F      D V +T+
Sbjct: 325 ALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTS 384

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y Q+G+ E+AL L+ EM    ++PD F  SS++++CA L++   G+ VH   +  G
Sbjct: 385 LVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILKFG 444

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+   ++L++MY KCG  +DA   F+ +P R +VSW++MI G AQ+G   EAL L+ 
Sbjct: 445 FMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFK 504

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L+  + P+  T VSVL AC HA L    +++F+S+  + GI P  +HYACMI+LLGR+
Sbjct: 505 QMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRA 564

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             ++ A++L+  +P + N+L+W  LL    +  +I  GE AA  L  LEP  +G +++L+
Sbjct: 565 GKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLA 624

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G W+ VA +R  MK   VKK    SW+E+ +KV+ F+  DR+H  +  IY +L 
Sbjct: 625 NIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLD 684

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L   L++AG+ P  ++ LHD +  EK + + +HSEKLA+A+ LI  P G  PIR+ KN+
Sbjct: 685 ELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVAFGLIATPPG-APIRVKKNL 743

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  +KF S I+ R II+RD+NRFHHF  G+CSC + W
Sbjct: 744 RICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEYW 786



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 157/577 (27%), Positives = 272/577 (47%), Gaps = 75/577 (12%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E A+  ++  CT   D+ L K++   + +  ++ +  F+ N L+  YAK G    
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDE-FVANSLVILYAKCGGFGD 63

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR LFD +P R ++SWNAL S +  S    D+                            
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHS----DMHG-------------------------- 93

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EA+ +F  M      P +++  S +N C  L D  +G++IHG ++      + F  NAL
Sbjct: 94  -EAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANAL 152

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMYAK G ++ A  +FD +   ++VSWN +I+G + +    + ++L +EM   G+ P+ 
Sbjct: 153 VDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNM 212

Query: 258 VTVSNILGACF-----QTGR------------------------------IDDAGRLFHV 282
            T+S+ L AC      + GR                              +DDA  +F +
Sbjct: 213 FTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKL 272

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + E+D + W  +I G++QN ++E+A  LF  M +E +  ++ ++S+V+ S A L + Y  
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMC 332

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H  ++  G + D  V ++LID Y KCG  +DA  VF   P  ++V + S++  YAQ+
Sbjct: 333 RQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQD 392

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLD 461
           GQ  EAL LY ++    +KPDSF   S+L+AC     +E+G Q H   +    G    + 
Sbjct: 393 GQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK--FGFMSDIF 450

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
               ++N+  +   ++ A      +P +   + WS ++   A  G   +G+ A +   ++
Sbjct: 451 AGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHG---YGKEALQLFKQM 506

Query: 522 EPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNV 557
             +   P +I L ++  AC     VA  +    S  +
Sbjct: 507 LKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKI 543


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/638 (38%), Positives = 363/638 (56%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++++S   + G + + + +FD MP +D V +N+ I G+   G    A Q+F  M     +
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+  T  S + AC  + +L+ GK +HG ++   LG ++ V  +  DMY+K G+I+ ARW+
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           F +M  RNLVSWN MISG ++NG   +  DLF  +       D  T+ ++L  C QT   
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G +  A  +F+ +K+++ + WT M+VG  
Sbjct: 349 ATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLA 408

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG  EDAL LF +M  E +  +  +  S+V SCA L SL  G+ +HG    LG   D++
Sbjct: 409 QNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIV 468

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             +AL+DMY KCG  + A  +F+    +++VV WNSMI GY  +G   +A+ +Y K+++E
Sbjct: 469 NMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEE 528

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            LKP+  TF+S+LSAC H+ L E+G + F+S+   H I P   HYAC+++LL R+   ++
Sbjct: 529 GLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEE 588

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A  LI+ +P +P + +   LLS C    +I  G   +  L  L+ +N G YIMLSN+YA 
Sbjct: 589 AQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAE 648

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RW+ V  IR  M+++ +KK   YS +E  N VH F + D +HP  E IY  L  L   
Sbjct: 649 ARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLESLRSA 708

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++ +G+ P+T  VL D  EE KV+ +  HSE+LA+A+ L+  P G + IRI KN+RVCGD
Sbjct: 709 VETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAG-SLIRITKNLRVCGD 767

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K+ S I+ R II+RD+NRFHHF  G CSC D W
Sbjct: 768 CHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/454 (26%), Positives = 223/454 (49%), Gaps = 40/454 (8%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A++   S++  R +FD+      +  N  + G+   G  RE L++F  M+    E  
Sbjct: 70  LVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVD 129

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             +   AL ACA  LD   G +I    V   +  N FV +++     K G+I +A+ +FD
Sbjct: 130 SCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFD 189

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            M N+++V WN +I GY++ G       LF EM   G+ P  +T+++++ AC        
Sbjct: 190 GMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKL 249

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G I+ A  +F+ +  ++ V W  MI G  +
Sbjct: 250 GKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVR 309

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG   ++  LF+ ++      D  +I S++  C++ ASL  G+++HG A +   + +L++
Sbjct: 310 NGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCA-IRSFESNLIL 368

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           S+A++D+Y KCG    A  VFN M  RNV++W +M+ G AQNG   +AL L+ ++ +E +
Sbjct: 369 STAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGI 428

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
             +S TFVS++ +C H    +RG++    +  + G    + +   ++++  +   ++ A 
Sbjct: 429 AANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRL-GFAFDIVNMTALVDMYAKCGKINLAE 487

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            +        + ++W+++++   M G   HG  A
Sbjct: 488 RIFSHGSISKDVVLWNSMITGYGMHG---HGYQA 518



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 198/434 (45%), Gaps = 68/434 (15%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K  H +I+  +L  + FV   L   Y+    ++ AR++FD+      +  N M+ GYL++
Sbjct: 49  KSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQS 108

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------- 270
           G+ ++ ++LF  M+   L  D  + +  L AC  +                         
Sbjct: 109 GRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVG 168

Query: 271 ----------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                     G+I +A R+F  +  KD VCW ++I GY Q G  + A  LF EM    ++
Sbjct: 169 SSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIK 228

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P   +++S++ +C  + +L  G+ +HG  + LG+ +D+LV ++ +DMY K G  + A  V
Sbjct: 229 PSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWV 288

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  MPTRN+VSWN+MI+G  +NG   E+  L+ +L++ +   D  T VS+L  C      
Sbjct: 289 FYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASL 348

Query: 441 ERGQ-------NHFDS-------ISAVHGITPSLDH---------------YACMINLLG 471
             G+         F+S       I  ++    SL                 +  M+  L 
Sbjct: 349 ATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLA 408

Query: 472 RSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAG 527
           ++   + A+ L   +  +    NS+ + +L+  CA  G +K G     HLF L    +  
Sbjct: 409 QNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIV 468

Query: 528 PYIMLSNMYAACGR 541
               L +MYA CG+
Sbjct: 469 NMTALVDMYAKCGK 482



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/514 (23%), Positives = 222/514 (43%), Gaps = 105/514 (20%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           Q    ++  G   +    T L+  C  + +++L K +  ++ L     N   +    +  
Sbjct: 217 QLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYV-LGLGLGNDILVLTSFVDM 275

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K G +  AR +F KMP R+++SWNA++S   R+G V +   LF ++ +R S  ++   
Sbjct: 276 YSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL-VRSSGGFDLT- 333

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
                                        T VS L  C+Q   L  GK +HG   + +  
Sbjct: 334 -----------------------------TIVSLLQGCSQTASLATGKILHG-CAIRSFE 363

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+ +  A+ D+Y+K G + +A ++F+RM +RN+++W  M+ G  +NG  +  + LF +M
Sbjct: 364 SNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQM 423

Query: 249 QLLGLNPDEVTVSNILGAC-----------------------------------FQTGRI 273
           Q  G+  + VT  +++ +C                                    + G+I
Sbjct: 424 QEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKI 483

Query: 274 DDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + A R+F H    KD V W +MI GY  +G    A+ ++++M+ E ++P++ +  S++S+
Sbjct: 484 NLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSA 543

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C+           H + V  G+    L +S   D               N+ P      +
Sbjct: 544 CS-----------HSRLVEQGIS---LFNSMERD--------------HNIRPIEK--HY 573

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
             +++  ++ G+  EA AL +K+     +P +    ++LS C        G    D + A
Sbjct: 574 ACLVDLLSRAGRFEEAQALIEKM---PFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLA 630

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           +  + P +  Y  + N+   +   DK VD I+ L
Sbjct: 631 LDAMNPGI--YIMLSNIYAEARRWDK-VDYIRGL 661


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/638 (38%), Positives = 379/638 (59%), Gaps = 19/638 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y K+G++  AR +FD MP R+++SW AL+  +  +G V    +LF KMP ++ V
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142

Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           S+   + GF   G   +A +++  +  KD    T   H      C      + G+    +
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIH----GLC------KEGRVDEAR 192

Query: 182 IVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +   +   +V     +   Y +   +D AR +FD M  +  VSW  M+ GY++NG+ + 
Sbjct: 193 EIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIED 252

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
             +LF+ M +  +    +  + ++    Q G I  A R+F  +KE+++  W T+I  + +
Sbjct: 253 AEELFEVMPVKPV----IACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHER 308

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG E +AL LF  M  + VRP   ++ S++S CA LASL+HG+ VH + V    D D+ V
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQEN 419
           +S L+ MY KCG    +  +F+  P+++++ WNS+I+GYA +G   EAL ++ ++ L  +
Sbjct: 369 ASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGS 428

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KP+  TFV+ LSAC +A + E G   ++S+ +V G+ P   HYACM+++LGR+   ++A
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           +++I S+  +P++ +W +LL  C     +   E  A+ L E+EP N+G YI+LSNMYA+ 
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQ 548

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKK 598
           GRW DVA +R  MK++ V+K    SW E++NKVH F      +HPE E I + L +L   
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGL 608

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+EAG++P+    LHD  EEEKV S+ YHSE+LA+AY L+K   G+ PIR+MKN+RVC D
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGI-PIRVMKNLRVCSD 667

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S +  R IILRD+NRFHHF  G CSCKD W
Sbjct: 668 CHTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 151/302 (50%), Gaps = 32/302 (10%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS--N 262
           G+I +AR LFD  +++++ SWN M++GY  N  P+    LF EM      PD   +S   
Sbjct: 31  GKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEM------PDRNIISWNG 84

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++    + G ID+A ++F ++ E++ V WT ++ GY  NGK + A  LF +M      P+
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM------PE 138

Query: 323 KFSISSVVSSCAKLASLYHGQVVHG-KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           K  +S  V     +  L  G++    K   +  D D +  +++I   CK G  D+A  +F
Sbjct: 139 KNKVSWTV---MLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + M  R+V++W +M+ GY QN +  +A  ++D + ++       ++ S+L   +     E
Sbjct: 196 DEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKT----EVSWTSMLMGYVQNGRIE 251

Query: 442 RGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             +  F+       + P     AC  MI+ LG+  ++ KA  +  S+  + N   W T++
Sbjct: 252 DAEELFE-------VMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKER-NDASWQTVI 303

Query: 500 SV 501
            +
Sbjct: 304 KI 305



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 98/237 (41%), Gaps = 63/237 (26%)

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--------------- 420
           DA  +F+ MP RN++SWN +++GY +NG+  EA  ++D + + N+               
Sbjct: 66  DARKLFDEMPDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGK 125

Query: 421 ------------KPDSFTFVSVLSACLH-------ADLFER--GQNHFDSISAVHGITP- 458
                       + +  ++  +L   L          L+E    +++    S +HG+   
Sbjct: 126 VDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKE 185

Query: 459 ----------------SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
                           S+  +  M+   G+++ VD A  +   +P K   + W+++L   
Sbjct: 186 GRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEK-TEVSWTSMLMGY 244

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR---SSMKSKN 556
              G I+  E     LFE+ P+   P I  + M +  G+  ++A  R    SMK +N
Sbjct: 245 VQNGRIEDAE----ELFEVMPVK--PVIACNAMISGLGQKGEIAKARRVFDSMKERN 295


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/703 (35%), Positives = 405/703 (57%), Gaps = 15/703 (2%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLD----CTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           KL++ ++ L+ + Q +  +A T  ++     C ++  +  AK++  ++   F   +   L
Sbjct: 214 KLQKGVE-LFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYV-FRFGLDSDVSL 271

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            N L+  Y+K+GKL  AR +FD M  R+  SWN+++S++A  G + D  +LF ++   D 
Sbjct: 272 CNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDM 331

Query: 122 ----VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
               V++N  ++G    G+  E L +  RMQ + F+P   +  S L A ++L  L  GK+
Sbjct: 332 KPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKE 391

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
            HG ++      +V+V  +L DMY K   +  A+ +FD M NRN+ +WN ++SGY   G 
Sbjct: 392 THGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGM 451

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTT 293
            +  + L  +M+  G+ PD VT + ++      G   +A  + H  K      + V WT 
Sbjct: 452 FEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTA 511

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G +Q G   D+L  F +M  E V P+  SI+ ++ +CA L+ L  G+ +H  ++  G
Sbjct: 512 LISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 571

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
             +D+ V++ALIDMY K     +A  VF  +  + + SWN MI G+A  G   EA+++++
Sbjct: 572 FIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFN 631

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ +  + PD+ TF ++LSAC ++ L   G  +FDS+   + I P L+HY CM++LLGR+
Sbjct: 632 EMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRA 691

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A DLI ++P KP++ IW  LL  C +  ++K  E AA++LF+LEP N+  YI++ 
Sbjct: 692 GYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMM 751

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+Y+   RWED+  +R  M +  V+    +SWI+I+ +VH F S+++ HP+   IY EL 
Sbjct: 752 NLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELY 811

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L+ ++++ G+ P+   V  +  E EK K +  H+EKLA+ Y LIK   G  PIR++KN 
Sbjct: 812 QLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAG-EPIRVIKNT 870

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH   K+ S +  R + LRD  RFHHF  G CSC D W
Sbjct: 871 RICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 130/516 (25%), Positives = 234/516 (45%), Gaps = 77/516 (14%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           H + +    L+ +G     E Y+  +  CTRV D+ L   +   +    ++ +  +L   
Sbjct: 115 HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV-YLRCA 173

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L++FY +   L  A  +F +MP  + + WN  +  + +S  +Q                 
Sbjct: 174 LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQ----------------- 216

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         + +++F +MQ    +    T V  L AC ++  L   KQIHG +  
Sbjct: 217 --------------KGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR 262

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +V + N L  MY+K G+++ AR +FD M NRN  SWN MIS Y   G       L
Sbjct: 263 FGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSL 322

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F E++   + PD VT                               W  ++ G+  +G +
Sbjct: 323 FYELESSDMKPDIVT-------------------------------WNCLLSGHFLHGYK 351

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E+ L +   M  E  +P+  S++SV+ + ++L  L  G+  HG  +  G D D+ V ++L
Sbjct: 352 EEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSL 411

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY K      A  VF+ M  RN+ +WNS+++GY+  G   +AL L +++ +E +KPD 
Sbjct: 412 IDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL 471

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVH-----GITPSLDHYACMINLLGRSSDVDKA 479
            T+  ++S      ++  G+   ++++ +H     G+TP++  +  +I+   ++ +   +
Sbjct: 472 VTWNGMISG---YAMWGCGK---EALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDS 525

Query: 480 VDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGE 512
           +     +  +   PNS   + LL  CA    ++ G+
Sbjct: 526 LKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGK 561


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/746 (34%), Positives = 389/746 (52%), Gaps = 113/746 (15%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG------------------ 104
           N+L++FY+    L  A  LFD M +RD +SW+ ++   A+ G                  
Sbjct: 117 NKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGAR 176

Query: 105 -------------------------------SVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
                                           ++D R LFDKM  RD V++   I G+A 
Sbjct: 177 PDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 236

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G + E+L +F +M+++   P     V+ + ACA+L  + + + I   I       +V +
Sbjct: 237 CGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVIL 296

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             A+ DMYAK G ++ AR +FDRM  +N++SW+ MI+ Y  +GQ +K +DLF+ M   G+
Sbjct: 297 GTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGM 356

Query: 254 NPDEVTVSNILGACFQTGRI-----------------------------------DDAGR 278
            PD++T++++L AC     +                                   DDA  
Sbjct: 357 LPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYG 416

Query: 279 LFHVIKEKDNVCWTTMIVGYTQ----------------------------NGKEEDALIL 310
           LF  +  +D+V W+ M+ G+ +                             G   ++L+L
Sbjct: 417 LFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVL 476

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F++M  E V PDK ++ +VV +CAKL +++  + +           D+++ +A+IDM+ K
Sbjct: 477 FDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 536

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  + A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +L+  + P+  T VS+
Sbjct: 537 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 596

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L AC HA L E G   F  +   + +   + HY C+++LLGR+  +D+A+ LI+S+  + 
Sbjct: 597 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEK 656

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           +  +W   L  C    D+   E AA  L EL+P N G YI+LSN+YA  GRWEDVA  R 
Sbjct: 657 DEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRD 716

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M  + +KK   ++WIE+DNK H+F   D THP ++ IYE L  L  KL+  G+ P+T  
Sbjct: 717 LMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNF 776

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VLHD  EE K+  +  HSEKLA+A+ LI  P   TPIRI+KN+RVCGDCH F K  S I 
Sbjct: 777 VLHDVDEELKIGILYSHSEKLAIAFGLIATPEH-TPIRIIKNLRVCGDCHTFCKLVSAIT 835

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR II+RD+NRFHHF  G CSC D W
Sbjct: 836 GRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/372 (31%), Positives = 194/372 (52%), Gaps = 23/372 (6%)

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           R  P  Y  +SAL  C  L  +R   Q+H +  V  +  N+ V N L   Y+    +D A
Sbjct: 78  RLNPKFY--ISALVNCRNLTQVR---QVHAQASVHGMLENIVVANKLIYFYSYYRALDDA 132

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
             LFD M  R+ VSW++M+ G+ K G    C   F+E+   G  PD  T+  ++ AC   
Sbjct: 133 YGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL 192

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       +   I+DA  LF  ++E+D V WT MI GY + GK  ++L+LF +M  
Sbjct: 193 KNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 252

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           E V PDK ++ +VV +CAKL +++  +++           D+++ +A+IDMY KCG  + 
Sbjct: 253 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 312

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +L   + PD  T  S+L AC++
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACIN 372

Query: 437 A-DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
             +L +  Q H  + ++VHG+  +L     +++       +D A  L   +  + +S+ W
Sbjct: 373 CRNLTQVRQVH--AQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVR-DSVSW 429

Query: 496 STLLSVCAMKGD 507
           S ++   A  GD
Sbjct: 430 SVMVGGFAKVGD 441



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 244/564 (43%), Gaps = 119/564 (21%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L +I+  N L+  ++   ++ D   LFD M +RDSVS++  + GFA  G        F  
Sbjct: 110 LENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRE 169

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + +    P +YT    + AC  L +L+                      AL DMY K  E
Sbjct: 170 LIRCGARPDNYTLPFVIRACRDLKNLQM---------------------ALVDMYVKCRE 208

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           I+ AR+LFD+M  R+LV+W +MI GY + G+  + + LF++M+  G+ PD+V +  ++ A
Sbjct: 209 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 268

Query: 267 C--------------------FQ---------------TGRIDDAGRLFHVIKEKDNVCW 291
           C                    FQ                G ++ A  +F  ++EK+ + W
Sbjct: 269 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 328

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + MI  Y  +G+   AL LF  MLS  + PDK +++S++ +C    +L   + VH +A V
Sbjct: 329 SAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASV 388

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL----- 406
            G+  +L+V++ L+  Y      DDA+ +F+ M  R+ VSW+ M+ G+A+ G  +     
Sbjct: 389 HGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGT 448

Query: 407 -----------------------EALALYDKLLQENLKPDSFTFVSVLSAC-----LHA- 437
                                  E+L L+DK+ +E + PD    V+V+ AC     +H  
Sbjct: 449 FRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 508

Query: 438 ----DLFERGQNHFDSISAVHGI--------------------TPSLDHYACMINLLGRS 473
               D  +R +   D I     I                      ++  ++ MI   G  
Sbjct: 509 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 568

Query: 474 SDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-- 528
               KA+DL   +      PN +   +LL  C+  G ++ G      ++E   + A    
Sbjct: 569 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKH 628

Query: 529 YIMLSNMYAACGRWEDVASIRSSM 552
           Y  + ++    GR ++   +  SM
Sbjct: 629 YTCVVDLLGRAGRLDEALKLIESM 652



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 130/284 (45%), Gaps = 38/284 (13%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
            N +EE +   F + L+      KF IS++V+ C  L  +   + VH +A V G+ ++++
Sbjct: 64  HNREEESSKFHFLQRLNP-----KFYISALVN-CRNLTQV---RQVHAQASVHGMLENIV 114

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V++ LI  Y      DDA+ +F+ M  R+ VSW+ M+ G+A+ G  +     + +L++  
Sbjct: 115 VANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG 174

Query: 420 LKPDSFTFVSVLSACLH--------ADLF------ERGQNHFDSISAVHGITPSLDHYAC 465
            +PD++T   V+ AC           D++      E  +  FD +     +T     +  
Sbjct: 175 ARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVT-----WTV 229

Query: 466 MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMA----ARHL 518
           MI         ++++ L + +  +   P+ +   T++  CA  G +    +      R  
Sbjct: 230 MIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKK 289

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           F+L+ I     I   +MYA CG  E    I   M+ KNV  ++A
Sbjct: 290 FQLDVILGTAMI---DMYAKCGCVESAREIFDRMEEKNVISWSA 330



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/156 (21%), Positives = 74/156 (47%), Gaps = 5/156 (3%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D +   G    + A   +V  C ++  +  A+ +  ++    ++ +   L   ++  +AK
Sbjct: 478 DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDV-ILGTAMIDMHAK 536

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTA 127
            G +  AR++FD+M  +++ISW+A+++A+   G  +    LF  M     + + ++  + 
Sbjct: 537 CGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSL 596

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           +   ++ G   E L+ FS M +D     D  H + +
Sbjct: 597 LYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCV 632


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/698 (34%), Positives = 396/698 (56%), Gaps = 44/698 (6%)

Query: 6   KLRQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +  +AI TL    + G   T+   T ++  C       + +++ S + +     +   + 
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVA 202

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L+ Y K G    A  +F++MP+R + SWNA++S +   G +    +LF+ MP R  V
Sbjct: 203 NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 262

Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           S+N  IAG+   G   +AL++FSRM  +    P ++T  S L+ACA L ++R GKQ+H  
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPK 239
           I+   +  N  V NAL   YAK G ++ AR + D+    + N++S+  ++ GY+K     
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK----- 377

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G ++ A  +F V+  +D V WT MIVGY 
Sbjct: 378 ------------------------------IGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG+ ++A+ LF  M++    P+ +++++V+S CA LA L +G+ +H +A+   ++    
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 467

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           VS+A+I MY + G    A  +F+ +  R   ++W SMI   AQ+GQ  EA+ L++++L+ 
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++PD  T+V VLSAC HA     G+ ++D I   H I P + HYACM++LL R+    +
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+ +P +P+++ W +LLS C +  + +  E+AA  L  ++P N+G Y  ++N+Y+A
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 647

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
           CGRW D A I  + K K V+K   +SW  I +K+H F ++D  HP+ + +Y   +++ ++
Sbjct: 648 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 707

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++ AGF P+ + VLHD  +E K + +  HSEKLA+A+ LI  P   T +R+MKN+RVC D
Sbjct: 708 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT-LRVMKNLRVCND 766

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S +  R II+RD+ RFHHF  G CSCKD W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/698 (34%), Positives = 396/698 (56%), Gaps = 44/698 (6%)

Query: 6   KLRQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +  +AI TL    + G   T+   T ++  C       + +++ S + +     +   + 
Sbjct: 38  RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVA 96

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L+ Y K G    A  +F++MP+R + SWNA++S +   G +    +LF+ MP R  V
Sbjct: 97  NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 156

Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           S+N  IAG+   G   +AL++FSRM  +    P ++T  S L+ACA L ++R GKQ+H  
Sbjct: 157 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 216

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPK 239
           I+   +  N  V NAL   YAK G ++ AR + D+    + N++S+  ++ GY+K     
Sbjct: 217 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK----- 271

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G ++ A  +F V+  +D V WT MIVGY 
Sbjct: 272 ------------------------------IGDMESAREMFGVMNNRDVVAWTAMIVGYE 301

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG+ ++A+ LF  M++    P+ +++++V+S CA LA L +G+ +H +A+   ++    
Sbjct: 302 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSS 361

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           VS+A+I MY + G    A  +F+ +  R   ++W SMI   AQ+GQ  EA+ L++++L+ 
Sbjct: 362 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 421

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++PD  T+V VLSAC HA     G+ ++D I   H I P + HYACM++LL R+    +
Sbjct: 422 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 481

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+ +P +P+++ W +LLS C +  + +  E+AA  L  ++P N+G Y  ++N+Y+A
Sbjct: 482 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 541

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
           CGRW D A I  + K K V+K   +SW  I +K+H F ++D  HP+ + +Y   +++ ++
Sbjct: 542 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 601

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++ AGF P+ + VLHD  +E K + +  HSEKLA+A+ LI  P   T +R+MKN+RVC D
Sbjct: 602 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT-LRVMKNLRVCND 660

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S +  R II+RD+ RFHHF  G CSCKD W
Sbjct: 661 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 42/286 (14%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           ++GR+ DA  +F  + E+D V WT M+VG  + G+  +A+    +M ++   P +F++++
Sbjct: 4   KSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTN 63

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+SSCA   +   G+ VH   V LG+   + V++++++MY KCG ++ A TVF  MP R+
Sbjct: 64  VLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRS 123

Query: 389 V-------------------------------VSWNSMINGYAQNGQDLEALALYDKLLQ 417
           V                               VSWN+MI GY QNG D +AL L+ ++L 
Sbjct: 124 VSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLH 183

Query: 418 E-NLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           E ++ PD FT  SVLSAC +      G Q H   +         + +   +I+   +S  
Sbjct: 184 ESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGS 241

Query: 476 VDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLF 519
           V+ A  ++ +S+    N + ++ LL     +G +K G+M +AR +F
Sbjct: 242 VENARRIMDQSMETDLNVISFTALL-----EGYVKIGDMESAREMF 282


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 243/698 (34%), Positives = 396/698 (56%), Gaps = 44/698 (6%)

Query: 6   KLRQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +  +AI TL    + G   T+   T ++  C       + +++ S + +     +   + 
Sbjct: 144 RFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFV-VKLGLGSCVPVA 202

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L+ Y K G    A  +F++MP+R + SWNA++S +   G +    +LF+ MP R  V
Sbjct: 203 NSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIV 262

Query: 123 SYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           S+N  IAG+   G   +AL++FSRM  +    P ++T  S L+ACA L ++R GKQ+H  
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPK 239
           I+   +  N  V NAL   YAK G ++ AR + D+    + N++S+  ++ GY+K     
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVK----- 377

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G ++ A  +F V+  +D V WT MIVGY 
Sbjct: 378 ------------------------------IGDMESAREMFGVMNNRDVVAWTAMIVGYE 407

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG+ ++A+ LF  M++    P+ +++++V+S CA LA L +G+ +H +A+   ++    
Sbjct: 408 QNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSSS 467

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           VS+A+I MY + G    A  +F+ +  R   ++W SMI   AQ+GQ  EA+ L++++L+ 
Sbjct: 468 VSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRA 527

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++PD  T+V VLSAC HA     G+ ++D I   H I P + HYACM++LL R+    +
Sbjct: 528 GVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFSE 587

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+ +P +P+++ W +LLS C +  + +  E+AA  L  ++P N+G Y  ++N+Y+A
Sbjct: 588 AQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYSA 647

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
           CGRW D A I  + K K V+K   +SW  I +K+H F ++D  HP+ + +Y   +++ ++
Sbjct: 648 CGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWEE 707

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++ AGF P+ + VLHD  +E K + +  HSEKLA+A+ LI  P   T +R+MKN+RVC D
Sbjct: 708 IKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT-LRVMKNLRVCND 766

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S +  R II+RD+ RFHHF  G CSCKD W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/645 (37%), Positives = 378/645 (58%), Gaps = 42/645 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R  +V + R LFD+MP+RD  S+N  I+G+   G ++EAL + + ++
Sbjct: 184 DVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLR 243

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                    T VS L+AC +  D  RG  IH   +   L   +FV N L D+YA+ G + 
Sbjct: 244 A----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLR 299

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD------------ 256
             + +FDRM  R+L+SWN +I  Y  N QP + I LFQEM+L  + PD            
Sbjct: 300 DCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS 359

Query: 257 -----------------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWT 292
                                  ++T+ N +   + + G +D A  +F+ +   D + W 
Sbjct: 360 QLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWN 419

Query: 293 TMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+I GY QNG   +A+ ++N M  E ++  ++ +  SV+ +C++  +L  G  +HG+ + 
Sbjct: 420 TIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK 479

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+  D+ V ++L DMY KCG  +DA ++F  +P  N V WN++I  +  +G   +A+ L
Sbjct: 480 NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVML 539

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++L E +KPD  TFV++LSAC H+ L + GQ  F+ +   +GITPSL HY CM+++ G
Sbjct: 540 FKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYG 599

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++ A+  IKS+  +P++ IW  LLS C + G++  G++A+ HLFE+EP + G +++
Sbjct: 600 RAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVL 659

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSNMYA+ G+WE V  IRS    K ++K   +S +E+DNKV  F + ++THP  E +Y E
Sbjct: 660 LSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRE 719

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L+ L  KL+  G+ P+ + VL D +++EK   +  HSE+LA+A+ LI  P   T IRI K
Sbjct: 720 LTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATP-AKTTIRIFK 778

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   KF S I  R II+RDSNRFHHF  G CSC D W
Sbjct: 779 NLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 136/515 (26%), Positives = 236/515 (45%), Gaps = 82/515 (15%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           +L++ Y   G +  AR  FD +  RD+ +WN ++S + R+G+                  
Sbjct: 91  KLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN------------------ 132

Query: 124 YNTAIAGFANKGFSREALQVFSR-MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                        S E ++ FS  M      P   T  S L AC  ++D   G +IH   
Sbjct: 133 -------------SSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHCLA 176

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +      +V+V  +L  +Y++   +  AR LFD M  R++ SWN MISGY ++G  K+ +
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEAL 236

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQT-------------------------------- 270
            L   ++ +    D VTV ++L AC +                                 
Sbjct: 237 TLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLY 292

Query: 271 ---GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
              GR+ D  ++F  +  +D + W ++I  Y  N +   A+ LF EM    ++PD  ++ 
Sbjct: 293 AEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLI 352

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           S+ S  ++L  +   + V G  +  G   +D+ + +A++ MY K G+ D A  VFN +P 
Sbjct: 353 SLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPN 412

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQN 445
            +V+SWN++I+GYAQNG   EA+ +Y+ + +E  +  +  T+VSVL AC  A    +G  
Sbjct: 413 TDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMK 472

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
               +   +G+   +     + ++ G+   ++ A+ L   +P + NS+ W+TL++     
Sbjct: 473 LHGRLLK-NGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFH 530

Query: 506 GDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
           G   HGE A     E+      P +I    + +AC
Sbjct: 531 G---HGEKAVMLFKEMLDEGVKPDHITFVTLLSAC 562



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 197/447 (44%), Gaps = 73/447 (16%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +L+  K +H ++VV     NV +   L ++Y   G +  AR  FD + NR++ +WNLMIS
Sbjct: 66  NLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMIS 125

Query: 231 GYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGAC---------------------- 267
           GY + G   + I  F    L  GL PD  T  ++L AC                      
Sbjct: 126 GYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDV 185

Query: 268 ----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                      +   + +A  LF  +  +D   W  MI GY Q+G  ++AL L N + + 
Sbjct: 186 YVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRAM 245

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
               D  ++ S++S+C +      G  +H  ++  G++ +L VS+ LID+Y + G   D 
Sbjct: 246 ----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDC 301

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS----- 432
             VF+ M  R+++SWNS+I  Y  N Q L A++L+ ++    ++PD  T +S+ S     
Sbjct: 302 QKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQL 361

Query: 433 ----ACLHADLFERGQNHF--------------------DSISAVHGITPSLD--HYACM 466
               AC     F   +  F                    DS  AV    P+ D   +  +
Sbjct: 362 GDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTI 421

Query: 467 INLLGRSSDVDKAVDLIKSLPHK----PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFEL 521
           I+   ++    +A+++   +  +     N   W ++L  C+  G ++ G ++  R L   
Sbjct: 422 ISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNG 481

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASI 548
             ++      L++MY  CGR ED  S+
Sbjct: 482 LYLDVFVVTSLADMYGKCGRLEDALSL 508



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 227/521 (43%), Gaps = 121/521 (23%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           TL +  +A        L+  CT   D      + S+   +  E +  F+ N+L+  YA+ 
Sbjct: 237 TLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLE-SELFVSNKLIDLYAEF 295

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G+L   + +FD+M +RD+ISWN+++ A+             ++ P+R             
Sbjct: 296 GRLRDCQKVFDRMYVRDLISWNSIIKAYE-----------LNEQPLR------------- 331

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNV 191
                  A+ +F  M+  R +P   T +S  +  +QL D+R  + + G  +  G    ++
Sbjct: 332 -------AISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDI 384

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            + NA+  MYAK G +D AR +F+ + N +++SWN +ISGY +NG   + I+++  M+  
Sbjct: 385 TIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEE 444

Query: 252 G-LNPDEVTVSNILGACFQT-----------------------------------GRIDD 275
           G +  ++ T  ++L AC Q                                    GR++D
Sbjct: 445 GEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLED 504

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF+ I   ++V W T+I  +  +G  E A++LF EML E V+PD  +  +++S+C+ 
Sbjct: 505 ALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACS- 563

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS---- 391
                                               G+ D+    F MM T   ++    
Sbjct: 564 ----------------------------------HSGLVDEGQWCFEMMQTDYGITPSLK 589

Query: 392 -WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHA--DLFERGQNHF 447
            +  M++ Y + GQ   AL     +   +L+PD+  + ++LSAC +H   DL +    H 
Sbjct: 590 HYGCMVDMYGRAGQLETALKFIKSM---SLQPDASIWGALLSACRVHGNVDLGKIASEHL 646

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
             +       P    Y  +++ +  S+   + VD I+S+ H
Sbjct: 647 FEVE------PEHVGYHVLLSNMYASAGKWEGVDEIRSIAH 681



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 135/298 (45%), Gaps = 41/298 (13%)

Query: 195 NALTDMYAKGGE---IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID----LFQE 247
           NAL D +  G E   ID    LF                 Y  N Q  KC+     + ++
Sbjct: 39  NALQDCWKNGNESKEIDDVHTLFR----------------YCTNLQSAKCLHARLVVSKQ 82

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           +Q + ++   V +   LG       +  A   F  I+ +D   W  MI GY + G   + 
Sbjct: 83  IQNVCISAKLVNLYCYLG------NVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEV 136

Query: 308 LILFNE-MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           +  F+  MLS  + PD  +  SV+ +C    ++  G  +H  A+  G   D+ V+++LI 
Sbjct: 137 IRCFSLFMLSSGLTPDYRTFPSVLKACR---TVIDGNKIHCLALKFGFMWDVYVAASLIH 193

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y +     +A  +F+ MP R++ SWN+MI+GY Q+G   EAL L + L       DS T
Sbjct: 194 LYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL----RAMDSVT 249

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL---LGRSSDVDKAVD 481
            VS+LSAC  A  F RG     S S  HG+   L     +I+L    GR  D  K  D
Sbjct: 250 VVSLLSACTEAGDFNRGVT-IHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 361/603 (59%), Gaps = 4/603 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A+A  G     R +FD +P R+ + YN  I  + N     +AL VF  M    F P 
Sbjct: 73  LMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPD 132

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT+   L AC+   +LR G Q+HG +    L  N+FV N L  +Y K G + +AR + D
Sbjct: 133 HYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLD 192

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
            M ++++VSWN M++GY +N Q    +D+ +EM  +   PD  T++++L A   T    +
Sbjct: 193 EMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVTNTSSENV 252

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  +++K  V W  MI  Y +N     ++ L+ +M   +V PD  + +SV+ +C
Sbjct: 253 LYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L  G+ +H       +  ++L+ ++LIDMY +CG  +DA  VF+ M  R+V SW 
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           S+I+ Y   GQ   A+AL+ ++      PDS  FV++LSAC H+ L   G+ +F  ++  
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + ITP ++H+AC+++LLGRS  VD+A ++IK +P KPN  +W  LLS C +  ++  G +
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  L +L P  +G Y++LSN+YA  GRW +V +IRS MK + ++K    S +E++N+VH
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVH 552

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D  HP+++ IYEELS L+ K++E G+ P T   LHD +EE+K   +  HSEKLA+
Sbjct: 553 TFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAI 612

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            + ++      +PIRI KN+RVCGDCH+  K  S I+ R I++RD+NRFHHF  G CSC 
Sbjct: 613 VFAILNTQE--SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCG 670

Query: 694 DNW 696
           D W
Sbjct: 671 DYW 673



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 179/388 (46%), Gaps = 62/388 (15%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           +DLN       F+ N L+  Y K G L  AR + D+M  +D++SWN++++ +A++    D
Sbjct: 164 LDLNL------FVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDD 217

Query: 109 -------------------------------------LRALFDKMPIRDSVSYNTAIAGF 131
                                                +  +F  +  +  VS+N  I+ +
Sbjct: 218 ALDICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVY 277

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                  +++ ++ +M K   EP   T  S L AC  L  L  G++IH  +    L  N+
Sbjct: 278 MKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNM 337

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            + N+L DMYA+ G ++ A+ +FDRM  R++ SW  +IS Y   GQ    + LF EMQ  
Sbjct: 338 LLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNS 397

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT-------QNGKE 304
           G +PD +    IL AC  +G +++    F+  +  D+   T +I  +        ++G+ 
Sbjct: 398 GQSPDSIAFVAILSACSHSGLLNEGK--FYFKQMTDDYKITPIIEHFACLVDLLGRSGRV 455

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVS 361
           ++A  +  +M    ++P++    +++SSC   +++  G +   K + L  ++    +L+S
Sbjct: 456 DEAYNIIKQM---PMKPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLS 512

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNV 389
               ++Y K G   +   + ++M  R +
Sbjct: 513 ----NIYAKAGRWTEVTAIRSLMKRRRI 536



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 165/382 (43%), Gaps = 84/382 (21%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G + + R + D+M  +D VS+N+ +AG+A      +AL +   M   R +
Sbjct: 172 NGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQK 231

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L A                        N    N L               +
Sbjct: 232 PDACTMASLLPAVT----------------------NTSSENVLY-----------VEEM 258

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  +  ++LVSWN+MIS Y+KN  P K +DL+ +M    + PD +T +++L AC      
Sbjct: 259 FMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSAL 318

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G ++DA R+F  +K +D   WT++I  Y
Sbjct: 319 LLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAY 378

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
              G+  +A+ LF EM +    PD  +  +++S+C+     + G +  GK     + DD 
Sbjct: 379 GMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACS-----HSGLLNEGKFYFKQMTDDY 433

Query: 359 LVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALA 410
            ++      + L+D+  + G  D+A+ +   MP + N   W ++++     +  D+  LA
Sbjct: 434 KITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGILA 493

Query: 411 LYDKLLQENLKPDSFTFVSVLS 432
             DKLLQ  L P+   +  +LS
Sbjct: 494 A-DKLLQ--LAPEESGYYVLLS 512



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 9   QAIDTLYSRGQAATE-EAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +++D     G+   E +A T   ++  C  ++ + L +R+  +++     PN   L N L
Sbjct: 285 KSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNM-LLENSL 343

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDS 121
           +  YA+ G L  A+ +FD+M  RD+ SW +L+SA+  +G   +  ALF +M       DS
Sbjct: 344 IDMYARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDS 403

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKD 150
           +++   ++  ++ G   E    F +M  D
Sbjct: 404 IAFVAILSACSHSGLLNEGKFYFKQMTDD 432


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/635 (38%), Positives = 369/635 (58%), Gaps = 45/635 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHAR-SGSVQDLRALFDKMPIRDS 121
           N+ +  + ++  L  AR++F+KM +R  ++WN +LS + + +G V++   LFDK+P  DS
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDS 136

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           VSYN  +  +        AL  F++M      P                           
Sbjct: 137 VSYNIMLVCYLRSYGVEAALAFFNKM------PVK------------------------- 165

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
                   ++   N L   +A+ G++ KA  LF  M  +N VSW+ MISGY+++G  +  
Sbjct: 166 --------DIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
            +L++ + +  +    V  + +L    + G+++ A R+F  +  K+ V W +MI GY +N
Sbjct: 218 EELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
            + ED L +F  M+   VRP+  S+SSV+  C+ L++L  G+ +H       +  D    
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC 333

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           ++LI MYCKCG  D AW +F  MP ++V+SWN+MI+GYAQ+G   +AL L+DK+    +K
Sbjct: 334 TSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMK 393

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           PD  TFV+V+ AC HA   + G  +F S+    GI     HY C+I+LLGR+  +D+AV 
Sbjct: 394 PDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVS 453

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           LIK +P KP++ I+ TLL  C +  ++   E AAR+L  L+P +A  Y+ L+N+YAA  +
Sbjct: 454 LIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNK 513

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W+ VA +R  MK  NV K   YSWIEI +  H+F S DR HPE   I+++L++L  K++ 
Sbjct: 514 WDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKL 573

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           AG+ P+ +  LHD +EE K K + +HSEKLA+A+ L+K   G TPIR+ KN+RVCGDCH 
Sbjct: 574 AGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPG-TPIRVFKNLRVCGDCHR 632

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +KF S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 633 AIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 206/431 (47%), Gaps = 53/431 (12%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK-SGKLFYARDLFDKMPLRDIIS 92
            R  D+E A+ +   M +      TT   N +L  Y K +GK+  A +LFDK+P  D +S
Sbjct: 84  VRACDLESARNVFEKMSVR-----TTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVS 138

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           +N +L  + RS  V+   A F+KMP++D  S+NT I+GFA  G  ++A  +FS M     
Sbjct: 139 YNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMP---- 194

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKAR 211
           E    +  + ++   +  DL   ++++      N+G  +V V  A+   Y K G+++ A 
Sbjct: 195 EKNGVSWSAMISGYVEHGDLEAAEELY-----KNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            +F RM  +NLV+WN MI+GY++N + +  + +F+ M    + P+ +++S++L  C    
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G +D A +LF  +  KD + W  MI 
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMIS 369

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVD 355
           GY Q+G    AL LF++M +  ++PD  +  +V+ +C     +  G Q         G++
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIE 429

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
              +  + +ID+  + G  D+A ++   MP +   +    + G  +  ++L+ LA +   
Sbjct: 430 AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLD-LAEFAAR 488

Query: 416 LQENLKPDSFT 426
              NL P S T
Sbjct: 489 NLLNLDPTSAT 499



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 12/154 (7%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + ++L C+ ++ + L +++   +  +    +TT     L+  Y K G L  A  LF +MP
Sbjct: 299 SSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC-TSLISMYCKCGDLDSAWKLFLEMP 357

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREA 140
            +D+ISWNA++S +A+ G+ +    LFDKM      P  D +++   I    + GF    
Sbjct: 358 RKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKP--DWITFVAVILACNHAGFVDLG 415

Query: 141 LQVFSRMQKD---RFEPTDYTHVSALNACAQLLD 171
           +Q F  M+K+     +P  YT V  L   A  LD
Sbjct: 416 VQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLD 449


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/663 (38%), Positives = 389/663 (58%), Gaps = 16/663 (2%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNA----- 95
           L++   +   L+F E     L NR+L  Y     L   + L  K+     + WN      
Sbjct: 7   LSRYFATARQLSFTED----LCNRILDQYPDINTL---KKLHGKVLNDQYLRWNPSVGIK 59

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  +A  G     R +FD++  ++ V +N  I  + N    ++AL V+  M    F P 
Sbjct: 60  LMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPD 119

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT+   L A ++   L  G QIHG ++   L  N++V N L  MY K   + +A+ + D
Sbjct: 120 MYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLD 179

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
            +  R++VSWN M+S Y +NG+    ++L +EM+ L L P++ T++++L A   T    +
Sbjct: 180 EIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNV 239

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  + +K  + W  MI  Y  N   ++A++L+++M +  V PD  SI SV+ + 
Sbjct: 240 LYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAY 299

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L  G+ VH  A    +  +LL+ +ALIDMY KCG   DA  VFN M  R+VVSW 
Sbjct: 300 GDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWT 359

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           S+I+ Y + GQ  +A+A++ ++    L PDS  FVSVL+AC HA L + G+ +F+ + A 
Sbjct: 360 SIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFN-LMAE 418

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
            GITP L+H+AC+++LLGR+  +D+A   I+ +P +P+  +W  LLS C +  ++  G +
Sbjct: 419 CGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGIL 478

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  L  L P ++G Y++LSN+YA  GRW DVA+IRS M+ K +KK    S +E+++ VH
Sbjct: 479 AADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVH 538

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D +HP+++ IYEEL  L+ K++E G+ P T   LHD +EE+K   +  HSEKLA+
Sbjct: 539 TFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAV 598

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ +I    G TPIR+ KN+RVCGDCH+  K  S I  R II+RD++RFHHF  G CSC 
Sbjct: 599 AFAIINTKPG-TPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCG 657

Query: 694 DNW 696
           D W
Sbjct: 658 DYW 660


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 236/603 (39%), Positives = 364/603 (60%), Gaps = 4/603 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ ++A  G     R +FD+M  R+ V YN  I  + N     + L VF  M    F P 
Sbjct: 59  LMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPD 118

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +YT+   L AC+   +LR G  IHG ++   L  N+FV N L  MY K G + +AR +FD
Sbjct: 119 NYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFD 178

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
            M  +++VSWN M++GY  N +    +++ +EM+  G  PD  T+++++ A   T    +
Sbjct: 179 EMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENV 238

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
               ++F  ++ K+ + W  MI  Y +N     A+ L+ +M    V PD  + +SV+ +C
Sbjct: 239 LYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L  G+ +H       +  +LL+ ++LIDMY +CG  DDA  VF+ M  R+V SW 
Sbjct: 299 GDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWT 358

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           S+I+ Y   GQ   A+AL+ ++L     PDS  FV++LSAC H+ L + G+ +F  ++  
Sbjct: 359 SLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDD 418

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + ITP ++HYAC+++LLGR+  VD+A ++IK +P +PN  +W+TLLS C +  ++  G +
Sbjct: 419 YRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGIL 478

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA +L +L P  +G Y++LSN+YA  GRW++V  IRS MK K ++K    S +E++N+VH
Sbjct: 479 AADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVH 538

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F++ D +HP+++ IYEEL  L+ K++E G+ P T   LHD +EE+K   +  HSEKLA+
Sbjct: 539 TFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAI 598

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            + L+        IRI KN+RVCGDCH+  K  S I+ R II+RD+NRFHHF  G CSC 
Sbjct: 599 VFALLNTQE--YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDGVCSCG 656

Query: 694 DNW 696
           D W
Sbjct: 657 DYW 659



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/318 (27%), Positives = 150/318 (47%), Gaps = 49/318 (15%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD----------- 108
           F+ N L+  Y K G LF AR +FD+M  +D++SWN++++ +A +    D           
Sbjct: 155 FVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDY 214

Query: 109 --------------------------LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
                                     +  +F  +  ++ +S+N  I  +       +A+ 
Sbjct: 215 GQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVD 274

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           ++ +M+K R EP   T  S L AC  L  L  G++IH  +    L  N+ + N+L DMYA
Sbjct: 275 LYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYA 334

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           + G +D A+ +FDRM  R++ SW  +IS Y   GQ    + LF EM   G  PD +    
Sbjct: 335 RCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVA 394

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT-------QNGKEEDALILFNEML 315
           IL AC  +G +D+ GR++   +  D+   T  I  Y        + G+ ++A  +  +M 
Sbjct: 395 ILSACSHSGLLDE-GRIYFK-QMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQM- 451

Query: 316 SEDVRPDKFSISSVVSSC 333
              + P++   ++++SSC
Sbjct: 452 --PIEPNERVWATLLSSC 467



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 170/382 (44%), Gaps = 84/382 (21%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G + + R +FD+M  +D VS+N+ +AG+A+     +AL++   M+    +
Sbjct: 158 NGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQK 217

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S + A A                      N    N L         ++K   +
Sbjct: 218 PDGCTMASLMPAVA----------------------NTSSENVLY--------VEK---I 244

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  +  +NL+SWN+MI  Y+KN  P + +DL+ +M+   + PD +T +++L AC      
Sbjct: 245 FVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSAL 304

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +DDA R+F  +K +D   WT++I  Y
Sbjct: 305 LLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAY 364

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
              G+  +A+ LF EML+    PD  +  +++S+C+     + G +  G+     + DD 
Sbjct: 365 GMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACS-----HSGLLDEGRIYFKQMTDDY 419

Query: 359 LVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALA 410
            ++      + L+D+  + G  D+A+ +   MP   N   W ++++        D+  LA
Sbjct: 420 RITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGILA 479

Query: 411 LYDKLLQENLKPDSFTFVSVLS 432
             D LLQ  L P+   +  +LS
Sbjct: 480 A-DNLLQ--LAPEQSGYYVLLS 498



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 9   QAIDTLYSRGQAATEE---AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           QA+D      +   E     +  ++  C  ++ + L +R+  +++     PN   L N L
Sbjct: 271 QAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNL-LLENSL 329

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDS 121
           +  YA+ G L  A+ +FD+M  RD+ SW +L+SA+  +G   +  ALF +M       DS
Sbjct: 330 IDMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDS 389

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKD-RFEP 154
           +++   ++  ++ G   E    F +M  D R  P
Sbjct: 390 IAFVAILSACSHSGLLDEGRIYFKQMTDDYRITP 423



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 101/238 (42%), Gaps = 28/238 (11%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           +  L  R +H Y +  KL             +++  N+L+  +AR G + D + +FD+M 
Sbjct: 302 SALLLGRRIHEYVEKKKL-----------CPNLLLENSLIDMYARCGCLDDAKRVFDRMK 350

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            RD  S+ + I+ +   G    A+ +F+ M      P     V+ L+AC+    L  G+ 
Sbjct: 351 FRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGR- 409

Query: 178 IHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISG--Y 232
           I+ K +  +      + +   L D+  + G +D+A  +  +M    N   W  ++S    
Sbjct: 410 IYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRV 469

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKEK 286
             N      I +     LL L P++    V +SNI     + GR  +   +  V+K K
Sbjct: 470 FTNMD----IGILAADNLLQLAPEQSGYYVLLSNIYA---KAGRWKEVTEIRSVMKRK 520


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 358/644 (55%), Gaps = 49/644 (7%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P +      LL  Y + G L  A  LF +MP R+ +S+  LL     +G V + R LFD+
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDE 168

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP RD V++   ++G+   G   EA  +F  M K                          
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR------------------------- 203

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                         NV    A+   YA+ GE++ AR LF+ M  RN VSW  M+ GY++ 
Sbjct: 204 --------------NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQA 249

Query: 236 GQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTT 293
           G  +   +LF  M      P+  V   N +   F Q G +D A  +F  ++E+D+  W+ 
Sbjct: 250 GHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSA 303

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y QN    +AL  F EML   VRP+  S+ S+++ CA LA L +G+ VH   +   
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+   SALI MY KCG  D A  VF+    +++V WNSMI GYAQ+G   +AL ++ 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +    + PD  T++  L+AC +    + G+  F+S++    I P  +HY+CM++LLGRS
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRS 483

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V++A DLIK++P +P+++IW  L+  C M  + +  E+AA+ L ELEP NAGPY++LS
Sbjct: 484 GLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLS 543

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEEL 592
           ++Y + GRWED + +R  + S+N+ K    SWIE D +VH F S D   HPE   I   L
Sbjct: 544 HIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRIL 603

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            KL   L E+G+S +   VLHD  EE+K  S+ YHSE+ A+AY L+K P G+ PIR+MKN
Sbjct: 604 EKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM-PIRVMKN 662

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVCGDCH  +K  + I  R I+LRD+NRFHHF  G CSC+D W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 17/204 (8%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +A I    + G  + A   F  MP R   S+N+++ GY +N     AL L+ ++   +L 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI--TPSLDHYACMINLLGRSSDVDKA 479
               ++ +++S      L  R Q   D+ +A+  I   PS+  +  ++    R   +  A
Sbjct: 81  ----SYNALISG-----LSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADA 131

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAA 538
           + L + +P + N + ++ LL      G +      AR LF E+   +   +  + + Y  
Sbjct: 132 IRLFQQMPER-NHVSYTVLLGGLLDAGRVNE----ARRLFDEMPDRDVVAWTAMLSGYCQ 186

Query: 539 CGRWEDVASIRSSMKSKNVKKFAA 562
            GR  +  ++   M  +NV  + A
Sbjct: 187 AGRITEARALFDEMPKRNVVSWTA 210


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/677 (36%), Positives = 388/677 (57%), Gaps = 34/677 (5%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  CT +  ++L   + S +    +  +T     RL+  Y+K G L  AR LFD  
Sbjct: 28  YDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHR 84

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
                    A                        +S   NT +  +AN G S EA+ ++ 
Sbjct: 85  HHHHHGHTQA-----------------------PNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            MQ+      ++T+   L  CA  L    G+ +HG++V    G ++FV  AL DMYAK G
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCG 181

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           EI  A  +FDRM  R++V W  MI+ Y +  +P K + LF++MQ  G   DE+T  ++  
Sbjct: 182 EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVAS 241

Query: 266 ACFQTG----RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           A  Q G     I  A  +F  ++E++ + W +M+ GYTQNG+  DAL LFN+M + +  P
Sbjct: 242 AVGQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDP 301

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +  +   +VS+C+ L S + G+ +H   +   +D D  + +A++DMY KCG  D A  +F
Sbjct: 302 NPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMF 361

Query: 382 N--MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           N   +  R+V SWN +I+GY  +G   EAL L+ ++  E ++P+  TF S+LSAC HA L
Sbjct: 362 NNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGL 421

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            + G+  F  ++ +  + P + HYACM+++LGR+  +++A  LIK +P +P+  +W  LL
Sbjct: 422 IDEGRKCFADMTKL-SVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALL 480

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             C + G+ + GE+AA +LF+LEP + G Y+++SN+YAA  +W++V  +R +MKS+ +KK
Sbjct: 481 LACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKK 540

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
            AA+S IE   +VH F + D++ P    +Y ++  L  +++  G+ P+   VLHD + E+
Sbjct: 541 PAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPED 600

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K   + YHSEKLA+A+ ++K   G+ PI++ KN+RVC DCH   KF S I GR II+RD 
Sbjct: 601 KEHLLNYHSEKLAVAFGIMKMDQGM-PIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDG 659

Query: 680 NRFHHFVGGNCSCKDNW 696
           NRFHHF GG CSC D W
Sbjct: 660 NRFHHFQGGRCSCGDYW 676


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 257/693 (37%), Positives = 380/693 (54%), Gaps = 84/693 (12%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + ++   NAL++ ++R GS+ D R +FD+MP+ D VS+N+ I  +A  G  + AL++FS+
Sbjct: 159 MSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSK 218

Query: 147 MQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M  +  F P D T V+ L  CA +     GKQ HG  V   +  N+FV N L DMYAK G
Sbjct: 219 MTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFG 278

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ---------------- 249
            +D+A  +F  M  +++VSWN M++GY + G+ +  + LF++MQ                
Sbjct: 279 MMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAIS 338

Query: 250 -----------------LL--GLNPDEVTVSNILGACFQTG------------------- 271
                            +L  G+ P+EVT+ ++L  C   G                   
Sbjct: 339 GYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDL 398

Query: 272 -----------------------RIDDAGRLFHVI--KEKDNVCWTTMIVGYTQNGKEED 306
                                  ++D A  +F  +  KE+D V WT MI GY+Q+G    
Sbjct: 399 RKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANK 458

Query: 307 ALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSA 363
           AL L +EM  ED   RP+ F+IS  + +CA LA+L  G+ +H  A+    +   L VS+ 
Sbjct: 459 ALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNC 518

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KCG   DA  VF+ M  +N V+W S++ GY  +G   EAL +++++ +   K D
Sbjct: 519 LIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLD 578

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             T + VL AC H+ + ++G  +F+ +    G++P  +HYAC+++LLGR+  ++ A+ LI
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLI 638

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P +P  ++W  LLS C + G ++ GE AA+ + EL   N G Y +LSNMYA  GRW+
Sbjct: 639 EEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWK 698

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  IRS M+ K +KK    SW+E       F   D+THP  + IY+ LS  ++++++ G
Sbjct: 699 DVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKDIG 758

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P T   LHD  +EEK   +  HSEKLALAY ++  P G   IRI KN+RVCGDCH   
Sbjct: 759 YVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAA-IRITKNLRVCGDCHTAF 817

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + S II   IILRDS+RFHHF  G CSCK  W
Sbjct: 818 TYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/515 (27%), Positives = 230/515 (44%), Gaps = 90/515 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSY--NTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+S +   G +    +L  + P  D+  Y  N+ I  + N G + + L  F  M    + 
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P +YT      AC ++  +R G   H    V     NVFV NAL  MY++ G +  AR +
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQTGR 272
           FD M   ++VSWN +I  Y K G+PK  +++F +M    G  PD++T+ N+L  C   G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 273 -----------------------------------IDDAGRLFHVIKEKDNVCWTTMIVG 297
                                              +D+A  +F  +  KD V W  M+ G
Sbjct: 245 RSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAG 304

Query: 298 YTQNGKEEDALILFN-----------------------------------EMLSEDVRPD 322
           Y+Q G+ EDA+ LF                                    +MLS  ++P+
Sbjct: 305 YSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-------DDLLVSSALIDMYCKCGVTD 375
           + ++ SV+S CA + +L HG+ +H  A+   +D       D+ +V + LIDMY KC   D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 376 DAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--KPDSFTFVSVL 431
            A  +F+ +    R+VV+W  MI GY+Q+G   +AL L  ++ +E+   +P++FT    L
Sbjct: 425 IARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 432 SACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
            AC        G Q H  ++       P L    C+I++  +  D+  A  +  ++  K 
Sbjct: 485 VACASLAALSIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGDIGDARLVFDNMMEK- 542

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           N + W++L++   M G   +GE A     E+  I 
Sbjct: 543 NEVTWTSLMTGYGMHG---YGEEALGIFEEMRRIG 574



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 179/378 (47%), Gaps = 52/378 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YAK G +  A  +F  MP++D++SWNA+++ +++ G  +D   LF++M   
Sbjct: 265 FVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEE 324

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
               D V+++ AI+G+A +G   EAL V  +M     +P + T +S L+ CA +  L  G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 176 KQIHGKIVVGNL-------GGNVFVRNALTDMYAKGGEIDKARWLFDRMN--NRNLVSWN 226
           K+IH   +   +       G    V N L DMYAK  ++D AR +FD ++   R++V+W 
Sbjct: 385 KEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWT 444

Query: 227 LMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGAC----------------- 267
           +MI GY ++G   K ++L  EM  +     P+  T+S  L AC                 
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYAL 504

Query: 268 -------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                               + G I DA  +F  + EK+ V WT+++ GY  +G  E+AL
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEAL 564

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALIDM 367
            +F EM     + D  ++  V+ +C+    +  G     +     GV       + L+D+
Sbjct: 565 GIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDL 624

Query: 368 YCKCGVTDDAWTVFNMMP 385
             + G  + A  +   MP
Sbjct: 625 LGRAGRLNAALRLIEEMP 642



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 165/354 (46%), Gaps = 23/354 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI- 118
            +H + +H YA    + Y  DL       + +  N L+  +A+   V   RA+FD +   
Sbjct: 381 LMHGKEIHCYA----IKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPK 436

Query: 119 -RDSVSYNTAIAGFANKGFSREALQVFSRMQKD--RFEPTDYTHVSALNACAQLLDLRRG 175
            RD V++   I G++  G + +AL++ S M ++  +  P  +T   AL ACA L  L  G
Sbjct: 437 ERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIG 496

Query: 176 KQIHGKIVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           KQIH   +        +FV N L DMYAK G+I  AR +FD M  +N V+W  +++GY  
Sbjct: 497 KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGM 556

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC---- 290
           +G  ++ + +F+EM+ +G   D VT+  +L AC  +G ID     F+ +K    V     
Sbjct: 557 HGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPE 616

Query: 291 -WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            +  ++    + G+   AL L  EM  E   P      +++S C     +  G+    K 
Sbjct: 617 HYACLVDLLGRAGRLNAALRLIEEMPME---PPPVVWVALLSCCRIHGKVELGEYAAKKI 673

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-----VSWNSMING 398
             L  ++D    + L +MY   G   D   + ++M  + +      SW   I G
Sbjct: 674 TELASNND-GSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKG 726



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 41/219 (18%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C  +  + + K++ ++   N       F+ N L+  YAK G +  AR +FD M  ++
Sbjct: 484 LVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKN 543

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
            ++W +L++ +   G  ++   +F++M       D V+    +   ++ G   + ++ F+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 146 RMQKD---RFEPTDYT-------HVSALNACAQLLD-------------LRRGKQIHGKI 182
           RM+ D      P  Y            LNA  +L++             L    +IHGK+
Sbjct: 604 RMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKV 663

Query: 183 VVGNLGGNVFVRNA---------LTDMYAKGGEIDKARW 212
            +G          A         L++MYA  G     RW
Sbjct: 664 ELGEYAAKKITELASNNDGSYTLLSNMYANAG-----RW 697


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/733 (34%), Positives = 400/733 (54%), Gaps = 75/733 (10%)

Query: 7   LRQAIDTLYSRG------QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           L++A+D L           A   EA   L+  C +  D+E+ +RL   +  +    N   
Sbjct: 83  LKEALDFLQRESDDVVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFV 142

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L+ R++  Y+  G                               S  D R +FDK+  ++
Sbjct: 143 LNTRIITMYSMCG-------------------------------SPSDSRMVFDKLRRKN 171

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
              +N  ++ +       +A+ +FS +      +P ++T    + ACA LLDL  G+ IH
Sbjct: 172 LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 231

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           G     +L  +VFV NAL  MY K G +++A + +FD M+ + + SWN ++ GY +N  P
Sbjct: 232 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDP 291

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
           +K +DL+ +M   GL+PD  T+ ++L AC +                             
Sbjct: 292 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISL 351

Query: 270 ------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  G+   A  LF  ++ +  V W  MI GY+QNG  ++A+ LF +MLS+ ++P +
Sbjct: 352 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 411

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            +I  V  +C++L++L  G+ +H  A+   + +D+ VSS++IDMY K G    +  +F+ 
Sbjct: 412 IAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 471

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +  ++V SWN +I GY  +G+  EAL L++K+L+  LKPD FTF  +L AC HA L E G
Sbjct: 472 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 531

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
             +F+ +  +H I P L+HY C++++LGR+  +D A+ LI+ +P  P+S IWS+LLS C 
Sbjct: 532 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 591

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + G++  GE  A  L ELEP     Y+++SN++A  G+W+DV  +R  MK   ++K A  
Sbjct: 592 IHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGC 651

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SWIE+  KVH F+  D   PE E + E   +L  K+   G++P+T  VLHD +EE+K+  
Sbjct: 652 SWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGI 711

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           +  HSEKLA+++ L+    G+ P+R+ KN+R+CGDCH   KF S ++ R I++RD+ RFH
Sbjct: 712 LRGHSEKLAISFGLLNTAKGL-PVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFH 770

Query: 684 HFVGGNCSCKDNW 696
           HF  G CSC D W
Sbjct: 771 HFRDGICSCGDYW 783


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/699 (36%), Positives = 392/699 (56%), Gaps = 68/699 (9%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           T     +  ++L +HM       N T+L+ +L  FYA  G +  A  +FD + L++   W
Sbjct: 70  TNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLW 129

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N ++  +A +G           +P++  V Y             RE L    R       
Sbjct: 130 NFMIRGYASNG-----------LPMKSLVLY-------------REMLCFGQR------- 158

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++T+   L AC  LL +  G+++H ++VV  L  +++V N+L  MYAK G++  AR +
Sbjct: 159 ADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMV 218

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FDRM  R+L SWN MISGY KN        +F  M   GL  D  T+  +L AC      
Sbjct: 219 FDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAV 278

Query: 268 ---------------------FQTGRID---------DAGRLFHVIKEKDNVCWTTMIVG 297
                                F    I+         DA RLF  ++ KD V W +MI+G
Sbjct: 279 KEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILG 338

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y +NG   ++L LF  M  +   PD+ +  +V+ +C ++A+L +G  +H   V  G D +
Sbjct: 339 YARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDAN 398

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
            +V +AL+DMY KCG    +  VF+ MP +++VSW++M+ GY  +G+  EA+++ D +  
Sbjct: 399 TIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKA 458

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            ++ PD+  F S+LSAC HA L   G+  F  +   + + P+L HY+CM++LLGR+  +D
Sbjct: 459 NSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLD 518

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  +I+++  KP S IW+ LL+   +  +IK  E++A+ +F++ P     YI LSN+YA
Sbjct: 519 EAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYA 578

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  RW+DV  +R+ ++ K +KK    S+IE+DN VH+F+  D++H +TE IY +L++L +
Sbjct: 579 AEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQ 638

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +L+EAG+ P+T LV +D +EE K K +  HSE+LA+A+ LI    G T IRI KN+RVCG
Sbjct: 639 QLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPG-TVIRITKNLRVCG 697

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   K  S++ GR II+RD +RFHHF+ G CSC D W
Sbjct: 698 DCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 208/469 (44%), Gaps = 88/469 (18%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD-------LRRGK 176
           YN+  + F+      +  Q+  R    R  P     +++L  C  LL         ++G+
Sbjct: 25  YNSFTSHFSQG----DVAQMVERSLSMREHPLQQYPLTSLQ-CGALLQSFTNTKSFKQGQ 79

Query: 177 QIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           Q+H  ++    L  N ++   L   YA  G + +A  +FD +  +N   WN MI GY  N
Sbjct: 80  QLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASN 139

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------------ 272
           G P K + L++EM   G   D  T   +L AC      + GR                  
Sbjct: 140 GLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVG 199

Query: 273 ------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                       +  A  +F  + E+D   W TMI GY +N     A ++F+ M    + 
Sbjct: 200 NSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLF 259

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWT 379
            D  ++  ++S+CA L ++  G+V+HG AV   + + +   +++LI+MYC C    DA  
Sbjct: 260 ADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARR 319

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC----- 434
           +F  +  ++ VSWNSMI GYA+NG   E+L L+ ++  +   PD  TF++VL AC     
Sbjct: 320 LFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAA 379

Query: 435 ------LHADLFERGQNHFDSISAVHGIT----------------------PSLDHYACM 466
                 +H+ L ++G   FD+ + V                           SL  ++ M
Sbjct: 380 LRYGMSIHSYLVKKG---FDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAM 436

Query: 467 I---NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
           +    L GR  +    +D +K+    P++ +++++LS C+  G +  G+
Sbjct: 437 VAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGK 485



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 190/426 (44%), Gaps = 84/426 (19%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           GQ A    Y  ++  C  +  VE+ +R+ S + +   E +  ++ N LL  YAK G +  
Sbjct: 156 GQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDI-YVGNSLLAMYAKFGDMGT 214

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FD+M  RD+ SWN                               T I+G+A    S
Sbjct: 215 ARMVFDRMAERDLTSWN-------------------------------TMISGYAKNADS 243

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG-NVFVRNA 196
             A  VF  M K        T +  L+ACA L  ++ GK IHG  V  ++G  N F  N+
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L +MY     +  AR LF+R+  ++ VSWN MI GY +NG   + + LF+ M L G  PD
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 257 EVTVSNILGACFQT-----------------------------------GRIDDAGRLFH 281
           +VT   +LGAC Q                                    G +  + R+F 
Sbjct: 364 QVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFD 423

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            + +K  V W+ M+ GY  +G+  +A+ + + M +  V PD    +S++S+C+     + 
Sbjct: 424 EMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACS-----HA 478

Query: 342 GQVVHGKAVVLGVDDDLLVSSAL------IDMYCKCGVTDDAWTVFNMM---PTRNVVSW 392
           G VV GK +   ++ +  V  AL      +D+  + G  D+A+ +   M   PT ++  W
Sbjct: 479 GLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDI--W 536

Query: 393 NSMING 398
            +++  
Sbjct: 537 AALLTA 542



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 8   RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           R A+D     G    +  +  ++  C ++  +     + S++    ++ NT  +   L+ 
Sbjct: 354 RMALD-----GSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANT-IVGTALVD 407

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVS 123
            Y+K G L  +R +FD+MP + ++SW+A+++ +   G  ++  ++ D M     I D+  
Sbjct: 408 MYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGV 467

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           + + ++  ++ G   E  ++F +M+K+       +H S +
Sbjct: 468 FTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCM 507


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/665 (37%), Positives = 382/665 (57%), Gaps = 43/665 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y  +G    AR LFD+M  R+++SWN L+S + ++  + + R +F+ MP R+ V
Sbjct: 52  NSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVV 111

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD---LRRGKQIH 179
           S+   + G+  +G   EA  +F RM        +   VS       L+D   + + ++++
Sbjct: 112 SWTAMVKGYMQEGMVGEAESLFWRM-------PERNEVSWTVMFGGLIDDGRIDKARKLY 164

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             + V ++  +  +   L     + G +D+AR +FD M  RN+V+W  MI+GY +N +  
Sbjct: 165 DMMPVKDVVASTNMIGGL----CREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVD 220

Query: 240 KCIDLFQEM----------QLLGLNPD----------EVTVSNILGAC-------FQTGR 272
               LF+ M           LLG              EV     + AC        + G 
Sbjct: 221 VARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFGEVGE 280

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I  A R+F +++++DN  W  MI  Y + G E +AL LF +M  + VRP   S+ S++S 
Sbjct: 281 ISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSV 340

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA LASL +G+ VH   V    DDD+ V+S L+ MY KCG    A  VF+   +++++ W
Sbjct: 341 CATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMW 400

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NS+I+GYA +G   EAL ++ ++      P+  T +++L+AC +A   E G   F+S+ +
Sbjct: 401 NSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMES 460

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
              +TP+++HY+C +++LGR+  VDKA++LI+S+  KP++ +W  LL  C     +   E
Sbjct: 461 KFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRLDLAE 520

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
           +AA+ LFE EP NAG Y++LS++ A+  +W DVA +R +M++ NV KF   SWIE+  KV
Sbjct: 521 VAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKV 580

Query: 573 HKFVSED-RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
           H F     + HPE  +I   L K    L+EAG+SP+   VLHD  EEEKV S+  HSE+L
Sbjct: 581 HMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERL 640

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A+AY L+K P GV PIR+MKN+RVCGDCH  +K  S +  R IILRD+NRFHHF  G CS
Sbjct: 641 AVAYGLLKLPEGV-PIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECS 699

Query: 692 CKDNW 696
           C+D W
Sbjct: 700 CRDYW 704



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 169/400 (42%), Gaps = 80/400 (20%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G+I++AR  FD +  + + SWN ++SGY  NG PK+   LF EM       + V+ + ++
Sbjct: 31  GKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMS----ERNVVSWNGLV 86

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               +   I +A  +F ++ E++ V WT M+ GY Q G   +A  LF  M      P++ 
Sbjct: 87  SGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRM------PERN 140

Query: 325 SISSVVSSCAKLASLYHGQVVHG------KAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
            +S  V        ++ G +  G      K   +    D++ S+ +I   C+ G  D+A 
Sbjct: 141 EVSWTV--------MFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEAR 192

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F+ M  RNVV+W +MI GY QN +   A  L++ + ++       ++ S+L     + 
Sbjct: 193 LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKT----EVSWTSMLLGYTLSG 248

Query: 439 LFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDK------------------ 478
             E  +  F+       + P     AC  MI   G   ++ K                  
Sbjct: 249 RIEDAEEFFE-------VMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRG 301

Query: 479 -------------AVDLIKSL------PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
                        A+DL   +      P  P SLI  ++LSVCA    +++G     HL 
Sbjct: 302 MIKAYERKGFELEALDLFAQMQKQGVRPSFP-SLI--SILSVCATLASLQYGRQVHAHLV 358

Query: 520 ELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV 557
             +  +   Y+  +L  MY  CG       +     SK++
Sbjct: 359 RCQ-FDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 21/197 (10%)

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I    + G  ++A   F+ +  + + SWNS+++GY  NG   EA  L+D++ + N+    
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV---- 79

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            ++  ++S  +   +    +N F+ +   + ++     +  M+    +   V +A  L  
Sbjct: 80  VSWNGLVSGYIKNRMIVEARNVFELMPERNVVS-----WTAMVKGYMQEGMVGEAESLFW 134

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEPINAGPYIMLSNMYAAC---G 540
            +P + N + W+ +       G I  G +  AR L+++ P+     +  +NM       G
Sbjct: 135 RMPER-NEVSWTVMFG-----GLIDDGRIDKARKLYDMMPVK--DVVASTNMIGGLCREG 186

Query: 541 RWEDVASIRSSMKSKNV 557
           R ++   I   M+ +NV
Sbjct: 187 RVDEARLIFDEMRERNV 203


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/644 (39%), Positives = 356/644 (55%), Gaps = 49/644 (7%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P +      LL  Y + G L  A  LF +MP R+ +S+  LL     +G V + R LFD+
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDE 168

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP RD V++   ++G+   G   EA  +F  M K                          
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR------------------------- 203

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                         NV    A+   YA+ GE++ AR LF+ M  RN VSW  M+ GY++ 
Sbjct: 204 --------------NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQA 249

Query: 236 GQPKKCIDLFQEMQLLGLNPDE-VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTT 293
           G  +   +LF  M      P+  V   N +   F Q G +D A  +F  + E+D+  W+ 
Sbjct: 250 GHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y QN    +AL  F EML   VRP+  S+ S+++ CA LA L +G+ VH   +   
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+   SALI MY KCG  D A  VF+    +++V WNSMI GYAQ+G   +AL ++ 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +    + PD  T++  L+AC +    + G+  F+S++    I P  +HY+CM++LLGRS
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRS 483

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V++A DLIK++P +P+++IW  L+  C M  + +  E AA+ L ELEP NAGPY++LS
Sbjct: 484 GLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLS 543

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEEL 592
           ++Y + GRWED + +R  + S+N+ K    SWIE D +VH F S D   HPE   I   L
Sbjct: 544 HIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRIL 603

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            KL   L E+G+S +   VLHD  EE+K  S+ YHSE+ A+AY L+K P G+ PIR+MKN
Sbjct: 604 EKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM-PIRVMKN 662

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVCGDCH  +K  + I  R IILRD+NRFHHF  G CSC+D W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 372/643 (57%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +   L + +A+   V + R +FD+MP RD VS+NT +AG++  G +R AL++ + M 
Sbjct: 169 DLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMC 228

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  +P+  T VS L A + L  +R GK+IHG  +       V +  AL DMYAK G + 
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLK 288

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            AR LFD M  RN+VSWN MI  Y++N  PK+ + +FQ+M   G+ P +V+V   L AC 
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 268 ----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTT 293
                + GR                              +D A  +F  ++ +  V W  
Sbjct: 349 DLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+G+ QNG+  +AL  F++M +  V+PD F+  SV+++ A+L+  +H + +HG  +   
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V++AL+DMY KCG    A  +F+MM  R+V +WN+MI+GY  +G    AL L++
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE 528

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ +  ++P+  TF+SV+SAC H+ L E G   F  +   + I PS+DHY  M++LLGR+
Sbjct: 529 EMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRA 588

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A D I  +P KP   ++  +L  C +  ++   E  A  LFEL P + G +++L+
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLA 648

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+Y A   WE V  +R SM  + ++K    S +EI N+VH F S    HP ++ IY  L 
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKKIYAFLE 708

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           KLI +++EAG+ P+T L+L   +++ K + +  HSEKLA+++ L+    G T I + KN+
Sbjct: 709 KLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTT-IHVRKNL 766

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   K+ S + GR II+RD  RFHHF  G CSC D W
Sbjct: 767 RVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 143/489 (29%), Positives = 237/489 (48%), Gaps = 78/489 (15%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+S   R GSV +   +F+ +  + +V Y T + GFA      +AL+ F RM+ D  EP 
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPV 134

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            Y     L  C    +LR GK+IHG +V      ++F    L +MYAK  ++ +AR +FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFD 194

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
           RM  R+LVSWN +++GY +NG  +  +++   M    L P  +T+ ++L A         
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRI 254

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G +  A  LF  + E++ V W +MI  Y Q
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           N   ++A+++F +ML E V+P   S+   + +CA L  L  G+ +H  +V L +D ++ V
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            ++LI MYCKC   D A ++F  + +R +VSWN+MI G+AQNG+ +EAL  + ++    +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTV 434

Query: 421 KPDSFTFVSVLSA--------------------CLHADLFER---------------GQN 445
           KPD+FT+VSV++A                    CL  ++F                  + 
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVC 502
            FD +S  H  T     +  MI+  G       A++L + +     +PN + + +++S C
Sbjct: 495 IFDMMSERHVTT-----WNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISAC 549

Query: 503 AMKGDIKHG 511
           +  G ++ G
Sbjct: 550 SHSGLVEAG 558



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/202 (38%), Positives = 117/202 (57%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R++   N+L+S + +   V    ++F K+  R  VS+N  I GFA  G   EAL  FS+M
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    +P  +T+VS + A A+L      K IHG ++   L  NVFV  AL DMYAK G I
Sbjct: 430 QARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAI 489

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR +FD M+ R++ +WN MI GY  +G  K  ++LF+EMQ   + P+ VT  +++ AC
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISAC 549

Query: 268 FQTGRIDDAGRLFHVIKEKDNV 289
             +G ++   + FH++KE  ++
Sbjct: 550 SHSGLVEAGLKCFHMMKENYSI 571



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 159/347 (45%), Gaps = 38/347 (10%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  + +  + ++    + G +D+A R+F  I +K NV + TM+ G+ +    + AL  F
Sbjct: 64  GLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFF 123

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M  ++V P  ++ + ++  C   A L  G+ +HG  V  G   DL   + L +MY KC
Sbjct: 124 VRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKC 183

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
               +A  VF+ MP R++VSWN+++ GY+QNG    AL + + + +ENLKP   T VSVL
Sbjct: 184 RQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVL 243

Query: 432 SACLHADLFERGQN--------HFDSISAVHGITPSLDHYA------------------- 464
            A     L   G+          FDS+  V+  T  +D YA                   
Sbjct: 244 PAVSALRLIRIGKEIHGYAMRAGFDSL--VNIATALVDMYAKCGSLKTARLLFDGMLERN 301

Query: 465 -----CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
                 MI+   ++ +  +A+ + + +     KP  +     L  CA  GD++ G    +
Sbjct: 302 VVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHK 361

Query: 517 HLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              ELE   N      L +MY  C   +  AS+   ++S+ +  + A
Sbjct: 362 LSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 31/110 (28%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+   L+  YAK G +  AR +FD M  R + +WNA+                      
Sbjct: 473 VFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAM---------------------- 510

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
                    I G+   G  + AL++F  MQK    P   T +S ++AC+ 
Sbjct: 511 ---------IDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSH 551


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/642 (38%), Positives = 369/642 (57%), Gaps = 38/642 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + LLH Y + G    AR +FD+MP ++++ W+AL++ ++  G  +    L ++M   
Sbjct: 53  FVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSA 112

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQLLDLRR 174
               + +++N  ++G    G + +A+    RM  + F P D T VS AL+A   + ++  
Sbjct: 113 GVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFP-DATGVSCALSAVGDVKEVSV 171

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GKQ+HG +V      +  V  AL DMY K G  D+   +F   ++ ++ S N +++G  +
Sbjct: 172 GKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSR 231

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
           N Q  + + LF+E    G+                               E + V WT++
Sbjct: 232 NAQVSEALLLFREFICRGV-------------------------------ELNVVSWTSI 260

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           +    QNG++ +A+ LF  M S  V P+  +I  V+ + A +A+L HG+  H  ++  G 
Sbjct: 261 VACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGF 320

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D+ V SAL+DMY KCG    A T+F+ MP+RNVVSWN+MI GYA +G    A+ L+  
Sbjct: 321 LHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCS 380

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           + +   KPD  TF  VL AC  A L E G+ +F+ +   HGI+P ++HYACM+ LLGRS 
Sbjct: 381 MQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSG 440

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +D+A DLI  +P +P+S IW +LL  C + G++   E+AA  LF+LEP NAG Y++LSN
Sbjct: 441 KLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSN 500

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA+   W+ V  +R  MK+  +KK    SWIEI NKVH  ++ D +HP    I E+L++
Sbjct: 501 IYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQ 560

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L  ++   GF+P+   VLHD +E+EK   +  HSEKLA+A  LI    G TP+R++KN+R
Sbjct: 561 LTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPG-TPLRVIKNLR 619

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +CGDCH  MKF S    R I +RD+NRFHHF  G CSC D W
Sbjct: 620 ICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 215/513 (41%), Gaps = 101/513 (19%)

Query: 152 FEPTDYTHVSALNAC-AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           F P  +   SAL +C AQ L     + +H   VV  L  + FV ++L   Y + G    A
Sbjct: 16  FPPDPHLLPSALKSCPAQPL----ARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAA 71

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
           R +FDRM  +N+V W+ +I+GY   G  +    L ++M+  G+ P+ +T           
Sbjct: 72  RSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVIT----------- 120

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                               W  ++ G  ++G+  DA+     M SE   PD   +S  +
Sbjct: 121 --------------------WNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCAL 160

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+   +  +  G+ VHG  V  G   D  V +ALIDMY KCG  D+   VF+     +V 
Sbjct: 161 SAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVA 220

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           S N+++ G ++N Q  EAL L+ + +   ++ +  ++ S+++ C+        QN  D  
Sbjct: 221 SCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCV--------QNGRDL- 271

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGD 507
                                      +AVDL   ++S+  +PNS+    +L   A    
Sbjct: 272 ---------------------------EAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAA 304

Query: 508 IKHGEMAARHLFELEP-----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           + HG  A  H F L       +  G    L +MYA CG+     +I  +M S+NV  + A
Sbjct: 305 LMHGRSA--HCFSLRKGFLHDVYVGS--ALVDMYAKCGKARHARTIFDAMPSRNVVSWNA 360

Query: 563 ----YSW-IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
               Y+   +  N V  F S  +   + +++    + ++    +AG +   +   ++ Q+
Sbjct: 361 MIGGYAMHGDAANAVQLFCSMQKCKQKPDLV--TFTCVLGACSQAGLTEEGRRYFNEMQQ 418

Query: 618 EEKVKSICYH----------SEKLALAYCLIKK 640
              +     H          S KL  AY LI +
Sbjct: 419 GHGISPRMEHYACMVTLLGRSGKLDEAYDLINE 451


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/664 (36%), Positives = 384/664 (57%), Gaps = 41/664 (6%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHAR-SGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           GK+ +   L       D+    AL+    + +G ++    +FD+MP R+ V++   I  F
Sbjct: 61  GKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRF 120

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
              GFSR+A+ +F  M    + P  +T    ++ACA++  L  G+Q H  ++   L  +V
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180

Query: 192 FVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ-PKKCIDLFQE 247
            V  +L DMYAK    G +D AR +FDRM   N++SW  +I+GY+++G   ++ I+LF E
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLE 240

Query: 248 MQLLGLNPDEVTVSNILGACF-----------------------------------QTGR 272
           M    + P+  T S++L AC                                    + G 
Sbjct: 241 MVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGN 300

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +++A + F V+ EK+ V + T++  Y ++   E+A  LFNE+       + F+ +S++S 
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
            + + ++  G+ +H + +  G   +L + +ALI MY +CG  + A+ VFN M   NV+SW
Sbjct: 361 ASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISW 420

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            SMI G+A++G    AL  + K+L+  + P+  T+++VLSAC H  L   G  HF S+  
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKV 480

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            HGI P ++HYAC+++LLGRS  +++A++L+ S+P K ++L+  T L  C + G++  G+
Sbjct: 481 EHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGK 540

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
            AA  + E +P +   YI+LSN++A+ G+WE+VA IR  MK +N+ K A  SWIE++NKV
Sbjct: 541 HAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKV 600

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           HKF   D +HP+ + IY+EL +L  K++E G+ P+T  VLHD +EE+K + +  HSEK+A
Sbjct: 601 HKFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIA 660

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +AY  I       PIR+ KN+RVCGDCH   K+ S +  + I+LRD+NRFHHF  G CSC
Sbjct: 661 VAYGFISTSTS-RPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSC 719

Query: 693 KDNW 696
            D W
Sbjct: 720 NDYW 723



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/441 (28%), Positives = 221/441 (50%), Gaps = 49/441 (11%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD VS++  I+ +AN   + EA+  F  M +  F P +Y       AC+   ++  GK I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 179 HGKIV-VGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            G ++  G    +V V  AL DM+ KG G+++ A  +FDRM +RN+V+W LMI+ + + G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-------------------------- 270
             +  +DLF +M L G  PD  T+S ++ AC +                           
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGC 184

Query: 271 ------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSE 317
                       G +DDA ++F  +   + + WT +I GY Q+G  + +A+ LF EM+  
Sbjct: 185 SLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQG 244

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V+P+ F+ SSV+ +CA L+ ++ G+ V+   V + +     V ++LI MY +CG  ++A
Sbjct: 245 QVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENA 304

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F+++  +N+VS+N+++N YA++    EA  L++++       ++FTF S+LS     
Sbjct: 305 RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSI 364

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
               +G+     I    G   +L     +I++  R  +++ A  +   +    N + W++
Sbjct: 365 GAIGKGEQIHSRILK-SGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTS 422

Query: 498 LLSVCAMKGDIKHGEMAARHL 518
           +++     G  KHG  A R L
Sbjct: 423 MIT-----GFAKHG-FATRAL 437



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 219/513 (42%), Gaps = 113/513 (22%)

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------- 267
           N R+LVSW+ +IS Y  N +  + I  F +M   G  P+E   + +  AC          
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 268 -----------FQT----------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                      F++                G ++ A ++F  + +++ V WT MI  + Q
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G   DA+ LF +M+     PD+F++S VVS+CA++  L  G+  H   +  G+D D+ V
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 361 SSALIDMYCKC---GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ-DLEALALYDKLL 416
             +L+DMY KC   G  DDA  VF+ MP  NV+SW ++I GY Q+G  D EA+ L+ +++
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHF--------DSISAVHG------------- 455
           Q  +KP+ FTF SVL AC +      G+  +         SI+ V               
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNME 302

Query: 456 ---------ITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCA 503
                       +L  Y  ++N   +S + ++A +L   I+      N+  +++LLS  +
Sbjct: 303 NARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGAS 362

Query: 504 MKGDIKHGEMAARHLFE------LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
             G I  GE     + +      L   NA     L +MY+ CG  E    + + M   NV
Sbjct: 363 SIGAIGKGEQIHSRILKSGFKSNLHICNA-----LISMYSRCGNIEAAFQVFNEMGDGNV 417

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
                 SW  +     K     R             +   K+ EAG SPN    +     
Sbjct: 418 -----ISWTSMITGFAKHGFATRA-----------LETFHKMLEAGVSPNEVTYI----- 456

Query: 618 EEKVKSICYH----SEKLALAYCLIKKPHGVTP 646
              V S C H    SE L   +  +K  HG+ P
Sbjct: 457 --AVLSACSHVGLISEGLK-HFKSMKVEHGIVP 486


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/687 (36%), Positives = 382/687 (55%), Gaps = 41/687 (5%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + + G + T+   T ++  C       + +++ S + +     +   + N +L+ Y K G
Sbjct: 153 MVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFV-VKLGLSSCVPVANSVLNMYGKCG 211

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
               AR +F++MP R + SWNA++S  A  G +    +LF+ MP R  VS+N  IAG+  
Sbjct: 212 DAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQ 271

Query: 134 KGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            G + +AL  FSRM       P ++T  S L+ACA L  +  GKQ+H  I+   +     
Sbjct: 272 NGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQ 331

Query: 193 VRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V NAL  MYAK G ++ AR +  +  M + N++S+  ++ GY+K G  K           
Sbjct: 332 VTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKH---------- 381

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                    A  +F V+  +D V WT MIVGY QNG  ++A+ L
Sbjct: 382 -------------------------AREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMEL 416

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M+     P+ +++++V+S CA LA L +G+ +H KA+    +    VS++++ MY +
Sbjct: 417 FRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYAR 476

Query: 371 CGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            G    A  VF+ +  R   V+W SMI   AQ+G   +A+ L++++L+  +KPD  TFV 
Sbjct: 477 SGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVG 536

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC H    + G+ +F  +   HGI P + HYACM++LL R+    +A + I+ +P +
Sbjct: 537 VLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVE 596

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P+++ W +LLS C +  +    E+AA  L  ++P N+G Y  LSN+Y+ACGRW D A I 
Sbjct: 597 PDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIW 656

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
              K K+VKK   +SW  I N+VH F ++D  HP+ + +Y   +K+   +++AGF P+ +
Sbjct: 657 KRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQ 716

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VLHD  +E K + +  HSEKLA+A+ L+  P   T +RIMKN+RVC DCH  +KF S +
Sbjct: 717 SVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTT-LRIMKNLRVCNDCHTAIKFISKV 775

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R IILRD+ RFHHF  G CSCKD W
Sbjct: 776 ADREIILRDATRFHHFKDGFCSCKDYW 802


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 381/639 (59%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+LL ++ ++ S+     LF  M  +D+V++N  + G++ +GF+ +A+ +F +MQ   F 
Sbjct: 178 NSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFR 237

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+++T  + L A  Q+ D+  G+Q+H  +V  N   NVFV NAL D Y+K   I +AR L
Sbjct: 238 PSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKL 297

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-------------LLGLNPD---- 256
           F  M   + +S+N++I+    NG+ ++ ++LF+E+Q             LL +  +    
Sbjct: 298 FYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNL 357

Query: 257 -----------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                            EV V N L   + +  +  +A R+F  +  + +V WT +I GY
Sbjct: 358 EMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGY 417

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  ED L LF EM    +  D  + +S++ +CA LASL  G+ +H + +  G   ++
Sbjct: 418 VQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNV 477

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              SAL+DMY KCG   +A  +F  MP RN VSWN++I+ YAQNG    AL  +++++  
Sbjct: 478 FSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHS 537

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L+P+S +F+S+L AC H  L E G  +F+S++ V+ + P  +HYA M+++L RS   D+
Sbjct: 538 GLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDE 597

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA 537
           A  L+  +P +P+ ++WS++L+ C +  + +    AA  LF ++ + +A PY+ +SN+YA
Sbjct: 598 AEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYA 657

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A G W+ V  ++ +++ + ++K  AYSW+EI  K H F + D +HP+T+ I  +L +L K
Sbjct: 658 AAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEK 717

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +++E G+ P++   LH+  EE KV+S+ YHSE++A+A+ LI  P G +PI +MKN+R C 
Sbjct: 718 QMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKG-SPILVMKNLRACN 776

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S I+ R I +RDS+RFHHF  G+CSCKD W
Sbjct: 777 DCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 150/572 (26%), Positives = 269/572 (47%), Gaps = 53/572 (9%)

Query: 29  LVLDCTR------VNDVELAKRLQSHMDLNF----YEPNTTFLHNRLLHFYAKSGKLFYA 78
           L+  CTR      +  +   KR   H+D +     ++PNT    N  +  + + G L  A
Sbjct: 3   LIKSCTRKTHLHNLGTLTSPKRHFQHVDASMIKTGFDPNTCRF-NFQVQTHLQRGDLGAA 61

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           R LFD+MP +++IS N ++  + +SG++   R+LFD M  R  V++   I G+A      
Sbjct: 62  RKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFL 121

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           EA  +F+ M +    P   T  + L+   +   +    Q+HG +V       + V N+L 
Sbjct: 122 EAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLL 181

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           D Y K   +  A  LF  M  ++ V++N +++GY K G     I+LF +MQ LG  P E 
Sbjct: 182 DSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEF 241

Query: 259 TVSNILGACFQT-----------------------------------GRIDDAGRLFHVI 283
           T + +L A  Q                                     RI +A +LF+ +
Sbjct: 242 TFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEM 301

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            E D + +  +I     NG+ E++L LF E+        +F  ++++S  A   +L  G+
Sbjct: 302 PEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGR 361

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H +A+V     ++LV ++L+DMY KC    +A  +F  +  ++ V W ++I+GY Q G
Sbjct: 362 QIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKG 421

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDH 462
              + L L+ ++ +  +  DS T+ S+L AC + A L    Q H   I +  G   ++  
Sbjct: 422 LHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRS--GCLSNVFS 479

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE-- 520
            + ++++  +   + +A+ + + +P + NS+ W+ L+S  A  GD  H   +   +    
Sbjct: 480 GSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISAYAQNGDGGHALRSFEQMIHSG 538

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+P N+  ++ +    + CG  E+     +SM
Sbjct: 539 LQP-NSVSFLSILCACSHCGLVEEGLQYFNSM 569



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 171/389 (43%), Gaps = 44/389 (11%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  L+  C     VE +  L   +    ++    F    LL   A S  L   R +  +
Sbjct: 308 SYNVLITCCAWNGRVEESLELFRELQFTRFD-RRQFPFATLLSIAANSLNLEMGRQIHSQ 366

Query: 85  MPLRDIIS----WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
             + D IS     N+L+  +A+     +   +F  +  + SV +   I+G+  KG   + 
Sbjct: 367 AIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDG 426

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L++F  M + +      T+ S L ACA L  L  GKQ+H +I+      NVF  +AL DM
Sbjct: 427 LKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDM 486

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YAK G I +A  +F  M  RN VSWN +IS Y +NG     +  F++M   GL P+ V+ 
Sbjct: 487 YAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSF 546

Query: 261 SNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
            +IL AC   G +++  + F+ +      E     + +M+    ++G+ ++A  L   M 
Sbjct: 547 LSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMP 606

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E   PD+   SS+++SC         ++   + + +   D L                 
Sbjct: 607 FE---PDEIMWSSILNSC---------RIHKNQELAIKAADQL----------------- 637

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
                FNM   R+   + SM N YA  G+
Sbjct: 638 -----FNMKGLRDAAPYVSMSNIYAAAGE 661


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/635 (38%), Positives = 369/635 (58%), Gaps = 45/635 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHAR-SGSVQDLRALFDKMPIRDS 121
           N+ +  + ++  L  AR++F+KM +R  ++WN +LS + + +G V++   LFDK+P  DS
Sbjct: 77  NKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDS 136

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           VSYN  +  +      + AL  F++M      P                           
Sbjct: 137 VSYNIMLVCYLRSYGVKAALAFFNKM------PVK------------------------- 165

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
                   ++   N L   +A+ G++ KA  LF  M  +N VSW+ MISGY+++G  +  
Sbjct: 166 --------DIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAA 217

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
            +L++ + +  +    V  + +L    + G+++ A R+F  +  K+ V W +MI GY +N
Sbjct: 218 EELYKNVGMKSV----VVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVEN 273

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
            + ED L +F  M+   VRP+  S+SSV+  C+ L++L  G+ +H       +  D    
Sbjct: 274 CRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC 333

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           ++LI MYCKCG  D AW +F  MP ++V++WN+MI+GYAQ+G   +AL L+DK+    +K
Sbjct: 334 TSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMK 393

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           PD  TFV+V+ AC HA   + G  +F S+    GI     HY C+I+LLGR+  +D+AV 
Sbjct: 394 PDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVS 453

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           LIK +P  P++ I+ TLL  C +  ++   E AAR+L  L+P +A  Y+ L+N+YAA  +
Sbjct: 454 LIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNK 513

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W+ VA +R  MK  NV K   YSWIEI +  H+F S DR HPE   I+++L++L  K++ 
Sbjct: 514 WDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKL 573

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           AG+ P+ +  LHD +EE K K + +HSEKLA+A+ L+K   G TPIR+ KN+RVCGDCH 
Sbjct: 574 AGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPG-TPIRVFKNLRVCGDCHR 632

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +KF S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 633 AIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 205/433 (47%), Gaps = 57/433 (13%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK-SGKLFYARDLFDKMPLRDIIS 92
            R  D+E A+ +   M +      TT   N +L  Y K +GK+  A +LFDK+P  D +S
Sbjct: 84  VRACDLESARNVFEKMSVR-----TTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVS 138

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           +N +L  + RS  V+   A F+KMP++D  S+NT I+GFA  G  ++A  +FS M     
Sbjct: 139 YNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMP---- 194

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKAR 211
           E    +  + ++   +  DL   ++++      N+G  +V V  A+   Y K G+++ A 
Sbjct: 195 EKNGVSWSAMISGYVEHGDLEAAEELY-----KNVGMKSVVVETAMLTGYMKFGKVELAE 249

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            +F RM  +NLV+WN MI+GY++N + +  + +F+ M    + P+ +++S++L  C    
Sbjct: 250 RIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLS 309

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G +D A +LF  +  KD + W  MI 
Sbjct: 310 ALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMIS 369

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVD 355
           GY Q+G    AL LF++M +  ++PD  +  +V+ +C     +  G Q         G++
Sbjct: 370 GYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIE 429

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMING-YAQNGQDLEALALYD 413
              +  + +ID+  + G  D+A ++   MP T +   + +++         DL   A  +
Sbjct: 430 AKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARN 489

Query: 414 KLLQENLKPDSFT 426
            L   NL P S T
Sbjct: 490 LL---NLDPTSAT 499



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 12/154 (7%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + ++L C+ ++ + L +++   +  +    +TT     L+  Y K G L  A  LF +MP
Sbjct: 299 SSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTAC-TSLISMYCKCGDLDSAWKLFLEMP 357

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREA 140
            +D+I+WNA++S +A+ G+ +    LFDKM      P  D +++   I    + GF    
Sbjct: 358 RKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKP--DWITFVAVILACNHAGFVDLG 415

Query: 141 LQVFSRMQKD---RFEPTDYTHVSALNACAQLLD 171
           +Q F  M+K+     +P  YT V  L   A  LD
Sbjct: 416 VQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLD 449


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 407/717 (56%), Gaps = 48/717 (6%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           + +  L+  C    D+   K L + +      P +T+L N     Y+K G L  A+  FD
Sbjct: 10  QTFRNLLKACIAQRDLITGKTLHA-LYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFD 68

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
                ++ S+N L++A+A+   +   R +FD++P  D VSYNT IA +A++G  R AL++
Sbjct: 69  LTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRL 128

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F+ +++ RF    +T    + AC   + L R  Q+H  +VV        V NA+   Y++
Sbjct: 129 FAEVRELRFGLDGFTLSGVIIACGDDVGLVR--QLHCFVVVCGYDCYASVNNAVLACYSR 186

Query: 204 GGEIDKARWLFDRMN---NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            G +++AR +F  M     R+ VSWN MI    ++ +  + ++LF+EM   GL  D  T+
Sbjct: 187 KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTM 246

Query: 261 SNILGA--CFQ------------------------TGRID----------DAGRLFHVIK 284
           +++L A  C +                        +G ID          +  ++F  I 
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA 306

Query: 285 EKDNVCWTTMIVGYTQ-NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             D V W TMI G++Q     ED +  F EM      PD  S   V S+C+ L+S   G+
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGK 366

Query: 344 VVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
            VH  A+   +  + + V++AL+ MY KCG   DA  VF+ MP  N+VS NSMI GYAQ+
Sbjct: 367 QVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQH 426

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G ++E+L L++ +LQ+++ P++ TF++VLSAC+H    E GQ +F+ +     I P  +H
Sbjct: 427 GVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEH 486

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y+CMI+LLGR+  + +A  +I+++P  P S+ W+TLL  C   G+++    AA    +LE
Sbjct: 487 YSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLE 546

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P NA PY+MLSNMYA+  RWE+ A+++  M+ + VKK    SWIEID KVH FV+ED +H
Sbjct: 547 PYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSH 606

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVL---HDTQEEEKVKSICYHSEKLALAYCLIK 639
           P  + I+  + ++++K+++AG+ P+ +  L    + + +EK + + YHSEKLA+A+ LI 
Sbjct: 607 PMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLIS 666

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               V PI ++KN+R+CGDCH  +K  S I GR I +RD++RFH F  G+CSC D W
Sbjct: 667 TEEWV-PILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/624 (37%), Positives = 373/624 (59%), Gaps = 40/624 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F+KMP R++V++   I      G++ EA+ +F  M    +EP  +T    ++ACA +  
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMEL 286

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLM 228
           L  G+Q+H + +   L  +  V   L +MYAK    G +  AR +FD++ + N+ SW  M
Sbjct: 287 LLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAM 346

Query: 229 ISGYL-KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------- 268
           I+GY+ K G  ++ +DLF+ M L  + P+  T S+ L AC                    
Sbjct: 347 ITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLG 406

Query: 269 ----------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           ++GRIDDA + F ++ EK+ + + T+I  Y +N   E+AL LFN
Sbjct: 407 FSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFN 466

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+  + +    F+ +S++S  A + ++  G+ +H + +  G+  +  V +ALI MY +CG
Sbjct: 467 EIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCG 526

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A+ VF  M  RNV+SW S+I G+A++G   +AL L+ K+L+E ++P+  T+++VLS
Sbjct: 527 NIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLS 586

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H  L   G  HF S+   HG+ P ++HYAC++++LGRS  + +A+  I S+P+K ++
Sbjct: 587 ACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADA 646

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           L+W T L  C + G+++ G+ AA+ + E EP +   YI+LSN+YA+  +W++V++IR +M
Sbjct: 647 LVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAM 706

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K K + K A  SW+E++NKVHKF   D +HP+   IY+EL  L  K+++ G+ PN   VL
Sbjct: 707 KEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVL 766

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EE+K K +  HSEK+A+A+ LI     + PIR+ KN+R+CGDCH  +K+ S   GR
Sbjct: 767 HDVEEEQKEKLLFQHSEKIAVAFGLISTSK-MKPIRVFKNLRICGDCHSAIKYISMATGR 825

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            II+RD+NRFHH   G CSC + W
Sbjct: 826 EIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 232/468 (49%), Gaps = 55/468 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D ++ N+L+S +++ G  +   ++F  M   RD +S++  ++ FAN      AL  F  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKG-G 205
            ++ + P +Y   +A  AC+    +  G  I G ++  G L  +V V   L DM+ KG G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           ++  A  +F++M  RN V+W LMI+  ++ G   + IDLF +M   G  PD  T+S ++ 
Sbjct: 220 DLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVIS 279

Query: 266 ACFQT--------------------------------------GRIDDAGRLFHVIKEKD 287
           AC                                         G +  A ++F  I + +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 288 NVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
              WT MI GY Q G  +E+AL LF  M+   V P+ F+ SS + +CA LA+L  G+ V 
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
             AV LG      V+++LI MY + G  DDA   F+++  +N++S+N++I+ YA+N    
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYAC 465
           EAL L++++  + +   +FTF S+LS         +G Q H   I +  G+   L+   C
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS--GL--KLNQSVC 515

Query: 466 --MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +I++  R  +++ A  + + +  + N + W+++++     G  KHG
Sbjct: 516 NALISMYSRCGNIESAFQVFEDMEDR-NVISWTSIIT-----GFAKHG 557



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 224/558 (40%), Gaps = 106/558 (18%)

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           N G   +A+     M      P   T+   L  C +      G  +H K+   +L  +  
Sbjct: 43  NNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 193 VRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
             N+L  +Y+K G+ +KA  +F  M ++R+L+SW+ M+S +  N    + +  F +M   
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 252 GLNPDEVTVSNILGAC-----------------------------------FQTGRID-- 274
           G  P+E   +    AC                                   F  GR D  
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A ++F  + E++ V WT MI    Q G   +A+ LF +M+     PD+F++S V+S+CA
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACA 282

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD---AWTVFNMMPTRNVVS 391
            +  L  GQ +H +A+  G+  D  V   LI+MY KC V      A  +F+ +   NV S
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 392 WNSMINGYAQ-NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           W +MI GY Q  G D EAL L+  ++  ++ P+ FTF S L AC +      G+  F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF--- 399

Query: 451 SAVHGITPSLDHYACMINLL-------GRSSDVDKAVDL--------------------- 482
              H +        C+ N L       GR  D  KA D+                     
Sbjct: 400 --THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLN 457

Query: 483 ----------IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIM 531
                     I+      ++  +++LLS  A  G I  GE + AR +     +N      
Sbjct: 458 SEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNA 517

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV--HKFVSEDRTHPETEIIY 589
           L +MY+ CG  E    +   M+ +NV      SW  I      H F ++           
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDRNV-----ISWTSIITGFAKHGFATQAL--------- 563

Query: 590 EELSKLIKKLQEAGFSPN 607
               +L  K+ E G  PN
Sbjct: 564 ----ELFHKMLEEGVRPN 577



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 190/421 (45%), Gaps = 56/421 (13%)

Query: 33  CTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C  +  + + +++ +H + L F   N   + N L+  YA+SG++  AR  FD +  +++I
Sbjct: 386 CANLAALRIGEQVFTHAVKLGFSSVNC--VANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           S+N ++ A+A++ +                               S EAL++F+ ++   
Sbjct: 444 SYNTVIDAYAKNLN-------------------------------SEEALELFNEIEDQG 472

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              + +T  S L+  A +  + +G+QIH +++   L  N  V NAL  MY++ G I+ A 
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ M +RN++SW  +I+G+ K+G   + ++LF +M   G+ P+EVT   +L AC   G
Sbjct: 533 QVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVG 592

Query: 272 RIDDAGRLFH-------VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
            +++  + F        VI   ++      I+G  ++G   +A+   N M     + D  
Sbjct: 593 LVNEGWKHFKSMYTEHGVIPRMEHYACIVDILG--RSGSLSEAIQFINSM---PYKADAL 647

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              + + +C    +L  G+    K ++     D      L ++Y      D+   +   M
Sbjct: 648 VWRTFLGACRVHGNLELGKHA-AKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAM 706

Query: 385 PTRNVV-----SW----NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
             + ++     SW    N +   Y  +    +A  +YD+L   ++K     +V  L   L
Sbjct: 707 KEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVL 766

Query: 436 H 436
           H
Sbjct: 767 H 767



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 101/212 (47%), Gaps = 5/212 (2%)

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T  ++    NG+   A+     M+ +   PD  + S  +  C +  S   G +VH K   
Sbjct: 35  TGRLIQEINNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQ 94

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALA 410
             +  D +  ++LI +Y KCG  + A ++F +M  +R+++SW++M++ +A N     AL 
Sbjct: 95  SDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALL 154

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
            +  +++    P+ + F +   AC  A+    G + F  +     +   +     +I++ 
Sbjct: 155 TFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMF 214

Query: 471 --GRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
             GR  D+  A  + + +P + N++ W+ +++
Sbjct: 215 VKGR-GDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/735 (35%), Positives = 406/735 (55%), Gaps = 62/735 (8%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKR-----LQSHMDLNFYEPN----TTFLH-- 62
           +Y  G    E  ++ ++  C+   ++EL K+     L + M      PN    +T L+  
Sbjct: 139 MYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNAC 198

Query: 63  ------NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
                 N  +  +    KL Y  D F         S NALL  +A+SG  +   A+F ++
Sbjct: 199 AGLEDENYGMKVHGYLIKLGYDSDPF---------SANALLDMYAKSGCPEAAIAVFYEI 249

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  D VS+N  IAG      +  AL++  +M   R  P+ +T  SAL ACA +  ++ G+
Sbjct: 250 PKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGR 309

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+H  ++  ++  + FV   L DMY+K G +  AR +FD M  ++++ WN +ISGY   G
Sbjct: 310 QLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCG 369

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNIL---------GACFQTGRI-------------- 273
              + + LF  M   GL  ++ T+S IL         G C Q   I              
Sbjct: 370 YDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVAN 429

Query: 274 ------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                       +DA ++F V   +D V +T+MI  Y+Q G  E+AL ++  M   D++P
Sbjct: 430 SLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKP 489

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D F  SS+ ++CA L++   G+ +H   +  G+  D+   ++L++MY KCG  DDA  +F
Sbjct: 490 DAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIF 549

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           N +  R +VSW++MI G AQ+G   +AL L+ ++L+  + P+  T VSVLSAC HA L  
Sbjct: 550 NEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVT 609

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
             +  F  +  + GITP+ +HYACM+++LGR   +D+A+ L+K +P + ++ +W  LL  
Sbjct: 610 EARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGA 669

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
             +  +I+ G  AA  L  LEP  +G +I+L+N+YA+ G W++VA +R SMK+  VKK  
Sbjct: 670 ARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEP 729

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
             SWIE+ +KV+ F+  DR+HP ++ IY +L  L ++L  AG+ P  +  LHD ++ EK 
Sbjct: 730 GMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKE 789

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
           + + +HSEKLA+A+ LI  P G  PIR+ KN+RVC DCH   KF S +  R II+RD NR
Sbjct: 790 QLLWHHSEKLAVAFGLIATPPG-APIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINR 848

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF  G+CSC D W
Sbjct: 849 FHHFRDGSCSCGDYW 863



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 131/525 (24%), Positives = 246/525 (46%), Gaps = 62/525 (11%)

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDS 121
           ++ Y+K      AR L       D++SW+AL+S + ++G  ++    + +M +     + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 122 VSYNTAIAGFA-------NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
            ++++ + G +        K   R AL   + M      P +++  + LNACA L D   
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVAL--VTEMISTGISPNEFSLSTVLNACAGLEDENY 206

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G ++HG ++      + F  NAL DMYAK G  + A  +F  +   ++VSWN +I+G + 
Sbjct: 207 GMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVL 266

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------------------- 268
           + +    + L  +M    + P   T+S+ L AC                           
Sbjct: 267 HEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFV 326

Query: 269 ---------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                    + G + DA  +F ++  KD + W ++I GY+  G + +A+ LF  M  E +
Sbjct: 327 GVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGL 386

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
             ++ ++S+++ S A   +    + VH  ++  G   D  V+++L+D Y KC + +DA  
Sbjct: 387 EFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAK 446

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF + P  ++V++ SMI  Y+Q G   EAL +Y ++   ++KPD+F F S+ +AC +   
Sbjct: 447 VFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSA 506

Query: 440 FERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           +E+G Q H   +    G+   +     ++N+  +   +D A  +        N + W  +
Sbjct: 507 YEQGKQIHVHVLKC--GLLSDVFAGNSLVNMYAKCGSIDDASCIF-------NEISWRGI 557

Query: 499 LSVCAMKGDIK---HGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
           +S  AM G +    HG  A +  +++      P +I L ++ +AC
Sbjct: 558 VSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSAC 602



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 164/330 (49%), Gaps = 31/330 (9%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           D+  G  IH +I+       + +RN L ++Y+K      AR L    +  +LVSW+ +IS
Sbjct: 65  DVSSGMAIHARIIRLG---LLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALIS 121

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY++NG+ ++ +  + EM LLG   +E T S++L  C  T  +                 
Sbjct: 122 GYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNL----------------- 164

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
                    + GK+   + L  EM+S  + P++FS+S+V+++CA L    +G  VHG  +
Sbjct: 165 ---------ELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLI 215

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            LG D D   ++AL+DMY K G  + A  VF  +P  ++VSWN++I G   + ++  AL 
Sbjct: 216 KLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALK 275

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L  K+    + P  FT  S L AC    L + G+    ++  +  + P       +I++ 
Sbjct: 276 LLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMD-MEPDSFVGVGLIDMY 334

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            +   +  A  +   +P K + ++W++++S
Sbjct: 335 SKCGLLQDARMVFDLMPXK-DVIVWNSIIS 363


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/639 (38%), Positives = 382/639 (59%), Gaps = 41/639 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + GS+ + R LFD++P R  V++N+ I+   + G S+EA++ +  M  +   P 
Sbjct: 41  LIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPD 100

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV---FVRNALTDMYAKGGEIDKARW 212
            YT  +   A +QL  +R G++ HG  VV  LG  V   FV +AL DMYAK  ++  A  
Sbjct: 101 AYTFSAISKAFSQLGLIRHGQRAHGLAVV--LGLEVLDGFVASALVDMYAKFDKMRDAHL 158

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG- 271
           +F R+  +++V +  +I GY ++G   + + +F++M   G+ P+E T++ IL  C   G 
Sbjct: 159 VFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGD 218

Query: 272 ----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                              I+D+ ++F+ +   + V WT+ +VG
Sbjct: 219 LVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVG 278

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             QNG+EE A+ +F EM+   + P+ F++SS++ +C+ LA L  G+ +H   + LG+D +
Sbjct: 279 LVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKLGLDGN 338

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
               +ALI++Y KCG  D A +VF+++   +VV+ NSMI  YAQNG   EAL L+++L  
Sbjct: 339 KYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKN 398

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             L P+  TF+S+L AC +A L E G   F SI   H I  ++DH+ CMI+LLGRS  ++
Sbjct: 399 MGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLE 458

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  LI+ +   P+ ++W TLL+ C + G+++  E     + EL P + G +I+L+N+YA
Sbjct: 459 EAAMLIEEV-RNPDVVLWRTLLNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYA 517

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           + G+W  V  ++S+++   +KK  A SW+++D +VH F++ D +HP +  I+E L  L+K
Sbjct: 518 SAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHTFMAGDLSHPRSLEIFEMLHGLMK 577

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K++  G++PNT+ VL D  EE+K+ S+ YHSEKLA+AY L K     T IRI KN+RVCG
Sbjct: 578 KVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIAYALWKTIGRTTTIRIFKNLRVCG 637

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH ++KF S + GR II RDS RFHHF GG CSCKD W
Sbjct: 638 DCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKDYW 676


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/644 (39%), Positives = 356/644 (55%), Gaps = 49/644 (7%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P +      LL  Y + G L  A  LF +MP R+ +S+  LL     +G V + R LFD+
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDE 168

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP RD V++   ++G+   G   EA  +F  M K                          
Sbjct: 169 MPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKR------------------------- 203

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                         NV    A+   YA+ GE++ AR LF+ M  RN VSW  M+ GY++ 
Sbjct: 204 --------------NVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQA 249

Query: 236 GQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTT 293
           G  +   +LF  M      P+  V   N +   F Q G +D A  +F  + E+D+  W+ 
Sbjct: 250 GHVEDAAELFNAM------PEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSA 303

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y QN    +AL  F EML   VRP+  S+ S+++ CA LA L +G+ VH   +   
Sbjct: 304 MIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCS 363

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+   SALI MY KCG  D A  VF+    +++V WNSMI GYAQ+G   +AL ++ 
Sbjct: 364 FDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFH 423

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +    + PD  T++  L+AC +    + G+  F+S++    I P  +HY+CM++LLGRS
Sbjct: 424 DMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRS 483

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V++A DLIK++P +P+++IW  L+  C M  + +  E AA+ L ELEP NAGPY++LS
Sbjct: 484 GLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLS 543

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEEL 592
           ++Y + GRWED + +R  + S+N+ K    SWIE D +VH F S D   HPE   I   L
Sbjct: 544 HIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRIL 603

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            KL   L E+G+S +   VLHD  EE+K  S+ YHSE+ A+AY L+K P G+ PIR+MKN
Sbjct: 604 EKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGM-PIRVMKN 662

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVCGDCH  +K  + I  R IILRD+NRFHHF  G CSC+D W
Sbjct: 663 LRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/647 (38%), Positives = 375/647 (57%), Gaps = 49/647 (7%)

Query: 59  TFLHNRLLHFYAKSGK----LFYARDLFDKMPLRDIISWNALLSAHARSGSV----QDLR 110
           T + N L+  Y+K       L  AR +FD++  +D  SW  +++ + ++G      + L 
Sbjct: 184 TSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLE 243

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
            + D M +   V+YN  I+G+ N+GF +EAL++  RM     E  ++T+ S + ACA   
Sbjct: 244 GMDDNMKL---VAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAG 300

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L+ GKQ+H   V+     +    N+L  +Y K G+ D+AR +F++M  ++LVSWN ++S
Sbjct: 301 LLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLS 359

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY+ +G                                    I +A  +F  +KEK+ + 
Sbjct: 360 GYVSSGH-----------------------------------IGEAKLIFKEMKEKNILS 384

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  MI G  +NG  E+ L LF+ M  E   P  ++ S  + SCA L +  +GQ  H + +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            +G D  L   +ALI MY KCGV ++A  VF  MP  + VSWN++I    Q+G   EA+ 
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVD 504

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           +Y+++L++ ++PD  T ++VL+AC HA L ++G+ +FDS+  V+ I P  DHYA +I+LL
Sbjct: 505 VYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLL 564

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
            RS     A  +I+SLP KP + IW  LLS C + G+++ G +AA  LF L P + G Y+
Sbjct: 565 CRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYM 624

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSNM+AA G+WE+VA +R  M+ + VKK  A SWIE++ +VH F+ +D +HPE E +Y 
Sbjct: 625 LLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYI 684

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEE-EKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            L  L K+++  G+ P+T  VLHD + +  K   +  HSEK+A+A+ L+K P G T IRI
Sbjct: 685 YLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTT-IRI 743

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R CGDCH F +F S ++ R IILRD  RFHHF  G CSC + W
Sbjct: 744 FKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/276 (31%), Positives = 151/276 (54%), Gaps = 10/276 (3%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM----DLNFYEPNTTFLHNR 64
           + +  + S G    E  Y  ++  C     ++L K++ +++    D +F+        N 
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFH------FDNS 325

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K GK   AR +F+KMP +D++SWNALLS +  SG + + + +F +M  ++ +S+
Sbjct: 326 LVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSW 385

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I+G A  GF  E L++FS M+++ FEP DY    A+ +CA L     G+Q H +++ 
Sbjct: 386 MIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLK 445

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                ++   NAL  MYAK G +++AR +F  M   + VSWN +I+   ++G   + +D+
Sbjct: 446 IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDV 505

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           ++EM   G+ PD +T+  +L AC   G +D   + F
Sbjct: 506 YEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYF 541


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 245/689 (35%), Positives = 393/689 (57%), Gaps = 43/689 (6%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + ++G          ++  C  ++ ++  K++     ++    ++  L + LLH Y +  
Sbjct: 65  MLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVL-SSLLHMYVQFD 123

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS------VSYNTA 127
            L  AR++FDK+P   +++ +AL+S  AR G V++ + LF +   RD       VS+N  
Sbjct: 124 HLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQ--TRDLGVELNLVSWNGM 181

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           I+GF   G   +A+ +F  M  +  +P   +  S L A   L     G QIH  ++   L
Sbjct: 182 ISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGL 241

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
           G + FV +AL DMY K     +   +F+ M+  ++ + N +++G  +NG     +++F++
Sbjct: 242 GPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQ 301

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
            + + LN                                  V WT+MI   +QNGK+ +A
Sbjct: 302 FKGMDLNV---------------------------------VSWTSMIASCSQNGKDMEA 328

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF EM  E V+P+  +I  ++ +C  +A+L HG+  H  ++  G+ +D+ V SALIDM
Sbjct: 329 LELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDM 388

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG    +   F+MMP RN+VSWNS++ GYA +G+  EA+ +++ + +   KPD  +F
Sbjct: 389 YAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSF 448

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
             VLSAC    L E G  +FDS+S  HG+   ++HY+CM+ LLGRS  +++A  +IK +P
Sbjct: 449 TCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMP 508

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P+S +W  LLS C +   +  GE+AA+ +FELEP N G YI+LSN+YA+   W +V  
Sbjct: 509 FEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDM 568

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +R  M+S+ +KK   YSWIEI NKVH  ++ D +HP+   I E+L+KL  +++++G+ P+
Sbjct: 569 VRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPH 628

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           T  VL D +E++K + +C HSEKLA+   L+    G  P++++KN+R+C DCH  +KF S
Sbjct: 629 TDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGF-PLQVIKNLRICRDCHAVIKFIS 687

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           D   R I +RD+NRFH F GG CSC D W
Sbjct: 688 DFEKREIFVRDTNRFHQFKGGVCSCGDYW 716


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 260/712 (36%), Positives = 379/712 (53%), Gaps = 69/712 (9%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T +A   L+ +    + + L + + + +      P   FL N L++ Y+K      AR +
Sbjct: 5   TADALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLV 64

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
               P R+++SW +L+S                               G A  G    AL
Sbjct: 65  LRLTPARNVVSWTSLVS-------------------------------GLAQNGHFSTAL 93

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
             F  M+++   P D+T      A A L     GKQIH   V      +VFV  +  DMY
Sbjct: 94  FEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMY 153

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K    D AR LFD +  RNL +WN  IS  + +G+PK+ I+ F E + +G  P+ +T  
Sbjct: 154 CKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFC 213

Query: 262 NILGAC--------------------FQT------GRIDDAGR---------LFHVIKEK 286
             L AC                    F T      G ID  G+         +F  +  K
Sbjct: 214 GFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMK 273

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           + V W +++  Y QN ++E A +L+     E V    F ISSV+S+CA +A L  G+ +H
Sbjct: 274 NAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISSVLSACAGMAGLELGRSIH 333

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
             AV   V+ ++ V SAL+DMY KCG  +D+   F+ MP +N+V+ NS+I GYA  GQ  
Sbjct: 334 AHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVD 393

Query: 407 EALALYDKLLQENL--KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
            ALAL++ +        P+  TFVS+LSAC  A   E G   FDS+ + +GI P  +HY+
Sbjct: 394 MALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYS 453

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           C++++LGR+  V++A + IK +P KP   +W  L + C M G    G +AA +LF+L+P 
Sbjct: 454 CIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPK 513

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           ++G +++LSN +AA GRW +  ++R  MK   +KK A YSWI + N+VH F ++DR+H  
Sbjct: 514 DSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKM 573

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            + I   L+KL  K++ AG+ P+ KL L+D +EEEK   + +HSEKLALA+ L+  P  V
Sbjct: 574 NKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSV 633

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PIRI KN+R+CGDCH F KF S  + R II+RD+NRFH F  G CSCKD W
Sbjct: 634 -PIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/643 (37%), Positives = 370/643 (57%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +   L + +A+   V + R +FD+MP RD VS+NT +AG++  G +R AL++   M 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  +P+  T VS L A + L  +  GK+IHG  +       V +  AL DMYAK G ++
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            AR LFD M  RN+VSWN MI  Y++N  PK+ + +FQ+M   G+ P +V+V   L AC 
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 268 ----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTT 293
                + GR                              +D A  +F  ++ +  V W  
Sbjct: 349 DLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNA 408

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+G+ QNG+  DAL  F++M S  V+PD F+  SV+++ A+L+  +H + +HG  +   
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D ++ V++AL+DMY KCG    A  +F+MM  R+V +WN+MI+GY  +G    AL L++
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ +  +KP+  TF+SV+SAC H+ L E G   F  +   + I  S+DHY  M++LLGR+
Sbjct: 529 EMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRA 588

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A D I  +P KP   ++  +L  C +  ++   E AA  LFEL P + G +++L+
Sbjct: 589 GRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLA 648

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+Y A   WE V  +R SM  + ++K    S +EI N+VH F S    HP+++ IY  L 
Sbjct: 649 NIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLE 708

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           KLI  ++EAG+ P+T LVL   + + K + +  HSEKLA+++ L+    G T I + KN+
Sbjct: 709 KLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTT-IHVRKNL 766

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   K+ S + GR I++RD  RFHHF  G CSC D W
Sbjct: 767 RVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 145/489 (29%), Positives = 243/489 (49%), Gaps = 78/489 (15%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+S   R GSV +   +F+ +  + +V Y+T + GFA      +ALQ F RM+ D  EP 
Sbjct: 75  LVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPV 134

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            Y     L  C    +LR GK+IHG +V      ++F    L +MYAK  ++++AR +FD
Sbjct: 135 VYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFD 194

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
           RM  R+LVSWN +++GY +NG  +  +++ + M    L P  +T+ ++L A         
Sbjct: 195 RMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISV 254

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G ++ A +LF  + E++ V W +MI  Y Q
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           N   ++A+++F +ML E V+P   S+   + +CA L  L  G+ +H  +V LG+D ++ V
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            ++LI MYCKC   D A ++F  + +R +VSWN+MI G+AQNG+ ++AL  + ++    +
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTV 434

Query: 421 KPDSFTFVSVLSA--------------------CLHADLFER---------------GQN 445
           KPD+FT+VSV++A                    CL  ++F                  + 
Sbjct: 435 KPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARL 494

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVC 502
            FD +S  H  T     +  MI+  G       A++L + +     KPN + + +++S C
Sbjct: 495 IFDMMSERHVTT-----WNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549

Query: 503 AMKGDIKHG 511
           +  G ++ G
Sbjct: 550 SHSGLVEAG 558



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/387 (26%), Positives = 183/387 (47%), Gaps = 42/387 (10%)

Query: 157 YTHVSAL--NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           Y H +AL    C+ L +LR   QI   +    L    F +  L  ++ + G +D+A  +F
Sbjct: 36  YEHPAALLLERCSSLKELR---QILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVF 92

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQ 269
           + ++++  V ++ M+ G+ K     K +  F  M+   + P     + +L  C      +
Sbjct: 93  EPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELR 152

Query: 270 TGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
            G+                              +++A ++F  + E+D V W T++ GY+
Sbjct: 153 VGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYS 212

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG    AL +   M  E+++P   +I SV+ + + L  +  G+ +HG A+  G D  + 
Sbjct: 213 QNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVN 272

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +S+AL+DMY KCG  + A  +F+ M  RNVVSWNSMI+ Y QN    EA+ ++ K+L E 
Sbjct: 273 ISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KP   + +  L AC      ERG+     +S   G+  ++     +I++  +  +VD A
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGR-FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +   L  +   + W+ ++   A  G
Sbjct: 392 ASMFGKLQSR-TLVSWNAMILGFAQNG 417



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 165/366 (45%), Gaps = 44/366 (12%)

Query: 239 KKCIDLFQEMQLL------GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT 292
           ++C  L +  Q+L      GL  +    + ++    + G +D+A R+F  I  K NV + 
Sbjct: 45  ERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYH 104

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           TM+ G+ +    + AL  F  M  +DV P  ++ + ++  C   A L  G+ +HG  V  
Sbjct: 105 TMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKS 164

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   DL   + L +MY KC   ++A  VF+ MP R++VSWN+++ GY+QNG    AL + 
Sbjct: 165 GFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQ--------NHFDSISAVHGITPSLDHYA 464
             + +ENLKP   T VSVL A     L   G+        + FDS+  V+  T  +D YA
Sbjct: 225 KSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSL--VNISTALVDMYA 282

Query: 465 ------------------------CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWST 497
                                    MI+   ++ +  +A+ + + +     KP  +    
Sbjct: 283 KCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMG 342

Query: 498 LLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            L  CA  GD++ G    +   EL    N      L +MY  C   +  AS+   ++S+ 
Sbjct: 343 ALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRT 402

Query: 557 VKKFAA 562
           +  + A
Sbjct: 403 LVSWNA 408


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 377/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D  S NAL+  ++++G ++   A+F  +   D VS+N  IAG      +  AL +   M+
Sbjct: 217 DQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMK 276

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P  +T  SAL ACA +     G+Q+H  ++  +   ++F    L DMY+K   +D
Sbjct: 277 GSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMD 336

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-- 266
            AR  +D M  +++++WN +ISGY + G     + LF +M    ++ ++ T+S +L +  
Sbjct: 337 DARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396

Query: 267 -------CFQT--------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
                  C Q                             ID+A ++F     +D V +T+
Sbjct: 397 SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTS 456

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y+Q G  E+AL L+ +M   D++PD F  SS++++CA L++   G+ +H  A+  G
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFG 516

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+  S++L++MY KCG  +DA   F+ +P R +VSW++MI GYAQ+G   EAL L++
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFN 576

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L++ + P+  T VSVL AC HA L   G+ +F+ +  + GI P+ +HYACMI+LLGRS
Sbjct: 577 QMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRS 636

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++AV+L+ S+P + +  +W  LL    +  +I+ G+ AA+ LF+LEP  +G +++L+
Sbjct: 637 GKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLA 696

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G WE+VA +R  MK   VKK    SWIEI +KV+ F+  DR+H  ++ IY +L 
Sbjct: 697 NIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLD 756

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L   L +AG+S   ++ +H+  + EK K + +HSEKLA+A+ LI  P G  PIR+ KN+
Sbjct: 757 QLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPG-GPIRVKKNL 815

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F KF   I+ R II+RD NRFHHF  G+CSC D W
Sbjct: 816 RICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/588 (27%), Positives = 265/588 (45%), Gaps = 101/588 (17%)

Query: 44  RLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS 103
            L +H+ + F       L N L+  Y+K  +  YAR L D+    D++SW++LL     S
Sbjct: 2   ELHAHL-IKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLL-----S 55

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           G VQ+                          GF  EAL VF+ M     +  ++T  S L
Sbjct: 56  GYVQN--------------------------GFVEEALLVFNEMCLLGVKCNEFTFPSVL 89

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC+   DL  G+++HG  VV     + FV N L  MYAK G +D +R LF  +  RN+V
Sbjct: 90  KACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVV 149

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------- 268
           SWN + S Y+++    + + LF+EM   G+ P+E ++S IL AC                
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 269 --------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                               + G I+ A  +F  I   D V W  +I G   +   + AL
Sbjct: 210 LKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLAL 269

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
           +L +EM     RP+ F++SS + +CA +     G+ +H   + +    DL  +  L+DMY
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMY 329

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            KC + DDA   ++ MP +++++WN++I+GY+Q G  L+A++L+ K+  E++  +  T  
Sbjct: 330 SKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLS 389

Query: 429 SVLSAC--------------------LHADLF-------ERGQ-NHFDSISAV--HGITP 458
           +VL +                     +++D +         G+ NH D  S +       
Sbjct: 390 TVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWE 449

Query: 459 SLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
            L  Y  MI    +  D ++A+ L   ++    KP+  I S+LL+ CA     + G+   
Sbjct: 450 DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLH 509

Query: 516 RHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            H  +   + +      L NMYA CG  ED     S + ++ +  ++A
Sbjct: 510 VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSA 557



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 149/559 (26%), Positives = 261/559 (46%), Gaps = 75/559 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E  +  ++  C+   D+ + +++     +  +E +  F+ N L+  YAK G L  
Sbjct: 77  GVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDG-FVANTLVVMYAKCGLLDD 135

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           +R LF  +  R+++SWNAL S + +S                                  
Sbjct: 136 SRRLFGGIVERNVVSWNALFSCYVQS-------------------------------ELC 164

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EA+ +F  M +    P +++    LNACA L +   G++IHG ++   L  + F  NAL
Sbjct: 165 GEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANAL 224

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY+K GEI+ A  +F  + + ++VSWN +I+G + +      + L  EM+  G  P+ 
Sbjct: 225 VDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNM 284

Query: 258 VTVSNILGACFQTG-----------------------------------RIDDAGRLFHV 282
            T+S+ L AC   G                                    +DDA R +  
Sbjct: 285 FTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDS 344

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + +KD + W  +I GY+Q G   DA+ LF++M SED+  ++ ++S+V+ S A L ++   
Sbjct: 345 MPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVC 404

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H  ++  G+  D  V ++L+D Y KC   D+A  +F      ++V++ SMI  Y+Q 
Sbjct: 405 KQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQY 464

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLD 461
           G   EAL LY ++   ++KPD F   S+L+AC +   +E+G Q H  +I    G    + 
Sbjct: 465 GDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK--FGFMCDIF 522

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
               ++N+  +   ++ A      +P++   + WS ++   A  G   HG+ A R   ++
Sbjct: 523 ASNSLVNMYAKCGSIEDADRAFSEIPNR-GIVSWSAMIGGYAQHG---HGKEALRLFNQM 578

Query: 522 EPINAGP-YIMLSNMYAAC 539
                 P +I L ++  AC
Sbjct: 579 LRDGVPPNHITLVSVLCAC 597


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/646 (36%), Positives = 367/646 (56%), Gaps = 38/646 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  +++ G ++    +F+KMP  D VS+N  I+G    G    AL++  +M
Sbjct: 238 KDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQM 297

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +T  S L ACA       G+QIHG +V      + FV   L DMYAK G +
Sbjct: 298 KSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFL 357

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM------------------- 248
           D AR +FD M  R+L+ WN +ISG   +G+  + + LF  M                   
Sbjct: 358 DDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLK 417

Query: 249 ------------------QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                             + +GL  D   ++ ++ + ++ G++D A ++F   +  D + 
Sbjct: 418 STASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIIS 477

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            TTM+   +Q    EDA+ LF +ML + + PD F +SS++++C  L++   G+ VH   +
Sbjct: 478 STTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLI 537

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
                 D+   +AL+  Y KCG  +DA   F+ +P R +VSW++MI G AQ+G    AL 
Sbjct: 538 KRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALD 597

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++L E + P+  T  SVLSAC HA L +  + +F+S+    GI  + +HYACMI++L
Sbjct: 598 LFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDIL 657

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  ++ A++L+ ++P + N+ +W  LL    +  D + G MAA  LF LEP  +G ++
Sbjct: 658 GRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHV 717

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +L+N YA+ G W+++A +R  MK  NVKK  A SW+EI +KVH F+  D++HP T  IY 
Sbjct: 718 LLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYG 777

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           +L++L   + +AG+ PN ++ LHD    EK   + +HSE+LA+A+ LI  P G  PIR+ 
Sbjct: 778 KLAELGDLMNKAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSG-APIRVK 836

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+C DCH+  K+ S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 837 KNLRICRDCHVAFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 155/546 (28%), Positives = 244/546 (44%), Gaps = 82/546 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL+ ++R       RA+FD++P    VS+++ +  ++N G  R+AL  F R  + R  
Sbjct: 41  NHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAF-RAMRGRGV 99

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P +   +  +  CA   D+R G Q+H   V   L  +VFV NAL  +Y   G +D+AR +
Sbjct: 100 PCNEFALPVVLKCAP--DVRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRM 157

Query: 214 FDRM----NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           FD        RN VSWN MIS Y+KN Q    I +F+EM   G  P+E   S ++ AC  
Sbjct: 158 FDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTG 217

Query: 268 ---FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTM 294
               + GR                              I+ A  +F  +   D V W   
Sbjct: 218 SRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAF 277

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G   +G +  AL L  +M S  + P+ F++SSV+ +CA   +   G+ +HG  V    
Sbjct: 278 ISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVA 337

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D D  V+  L+DMY K G  DDA  VF+ MP R+++ WN++I+G + +G+  E L+L+ +
Sbjct: 338 DFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR 397

Query: 415 LLQENLKPD--SFTFVSVL------SACLHADLFERGQNHFDSISAVHGITPSLDH---- 462
           + +E L  D    T  SVL       A  H             +S  H I   +D     
Sbjct: 398 MRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKC 457

Query: 463 ----YACMINLLGRSSDVDKAVDLIKSLPH-------------------KPNSLIWSTLL 499
               YA  +    RS D+  +  ++ +L                     +P+S + S+LL
Sbjct: 458 GQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLL 517

Query: 500 SVCAMKGDIKHGEMAARHLFELE---PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           + C      + G+    HL + +    + AG  ++ +  YA CG  ED     S +  + 
Sbjct: 518 NACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYA--YAKCGSIEDADMAFSGLPERG 575

Query: 557 VKKFAA 562
           +  ++A
Sbjct: 576 IVSWSA 581



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/513 (28%), Positives = 247/513 (48%), Gaps = 52/513 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTAIAGFANKGFSREALQ 142
           + D+   NAL++ +   G V + R +FD+       R++VS+NT I+ +     S +A+ 
Sbjct: 132 VHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIG 191

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           VF  M      P ++     +NAC    DL  G+Q+HG +V      +VF  NAL DMY+
Sbjct: 192 VFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYS 251

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G+I+ A  +F++M   ++VSWN  ISG + +G   + ++L  +M+  GL P+  T+S+
Sbjct: 252 KLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSS 311

Query: 263 ILGAC-----FQTGR------------------------------IDDAGRLFHVIKEKD 287
           +L AC     F  GR                              +DDA ++F  +  +D
Sbjct: 312 VLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRD 371

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSE--DVRPDKFSISSVVSSCAKLASLYHGQVV 345
            + W  +I G + +G+  + L LF+ M  E  D+  ++ +++SV+ S A   ++ H + V
Sbjct: 372 LILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQV 431

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  A  +G+  D  V + LID Y KCG  D A  VF    + +++S  +M+   +Q    
Sbjct: 432 HALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHG 491

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYA 464
            +A+ L+ ++L++ L+PDSF   S+L+AC     +E+G Q H   I      T  +    
Sbjct: 492 EDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIK--RQFTSDVFAGN 549

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            ++    +   ++ A      LP +   + WS ++   A  G   HG+ A      +   
Sbjct: 550 ALVYAYAKCGSIEDADMAFSGLPER-GIVSWSAMIGGLAQHG---HGKRALDLFHRMLDE 605

Query: 525 NAGP-YIMLSNMYAAC---GRWEDVASIRSSMK 553
              P +I L+++ +AC   G  +D      SMK
Sbjct: 606 GVAPNHITLTSVLSACNHAGLVDDAKKYFESMK 638



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 67/323 (20%), Positives = 126/323 (39%), Gaps = 61/323 (18%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +I S ++      SL+ G  +H   +  G+      S+ L+ +Y +C +   A  VF+ +
Sbjct: 6   TIGSALARFGTSRSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEI 63

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL--------SACLH 436
           P    VSW+S++  Y+ NG   +AL  +  +    +  + F    VL         A +H
Sbjct: 64  PDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVH 123

Query: 437 A---------DLF---------------ERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           A         D+F               +  +  FD    V G   ++  +  MI+   +
Sbjct: 124 ALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS-WNTMISAYVK 182

Query: 473 SSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHGEM----AARHLFELEPIN 525
           +     A+ + + +     +PN   +S +++ C    D++ G        R  +E +   
Sbjct: 183 NDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFT 242

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           A     L +MY+  G  E  A++   M + +V      SW       + F+S   TH   
Sbjct: 243 ANA---LVDMYSKLGDIEMAATVFEKMPAADV-----VSW-------NAFISGCVTHGHD 287

Query: 586 EIIYEELSKLIKKLQEAGFSPNT 608
               E    L+ +++ +G  PN 
Sbjct: 288 HRALE----LLLQMKSSGLVPNV 306


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 373/639 (58%), Gaps = 38/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + +   +   R +F+ M  RD +S+N+ IAG A      EA+ +F ++ +   +
Sbjct: 361 NSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLK 420

Query: 154 PTDYTHVSALNACAQLLD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P  YT  S L A + L + L   KQIH   +  N   + FV  AL D Y++   + +A  
Sbjct: 421 PDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEV 480

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LF R NN +LV+WN M+SGY ++    K ++LF  M   G   D+ T++ +L  C     
Sbjct: 481 LFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFA 539

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + G +  A   F  I   D+V WTT+I G
Sbjct: 540 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISG 599

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             +NG+EE AL +F++M    V PD+F+I+++  + + L +L  G+ +H  A+ L    D
Sbjct: 600 CIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSD 659

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V ++L+DMY KCG  DDA+ +F  +   N+ +WN+M+ G AQ+G+  EAL L+ ++  
Sbjct: 660 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMES 719

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             +KPD  TF+ VLSAC H+ L      +  S+   +GI P ++HY+C+ + LGR+  V 
Sbjct: 720 LGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVK 779

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A +LI S+  + ++ ++ TLL+ C ++GD + G+  A  L ELEP+++  Y++LSNMYA
Sbjct: 780 EAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 839

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  +W+++   R+ MK   VKK   +SWIE+ NK+H FV +DR++P+TE+IY+++  +I+
Sbjct: 840 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIR 899

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            +++ G+ P T   L D +EEEK +++ YHSEKLA+A+ L+  P   TPIR++KN+RVCG
Sbjct: 900 DIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPS-TPIRVIKNLRVCG 958

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  MK+ S +  R I+LRD+NRFH F  G CSC D W
Sbjct: 959 DCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 214/413 (51%), Gaps = 46/413 (11%)

Query: 32  DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           D    +D+ L K   + + L   E    FL N L+  Y+K G L YAR +FDKMP RD++
Sbjct: 55  DAISTSDLMLGKCTHARI-LALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLV 113

Query: 92  SWNALLSAHARS--GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           SWN++L+A+A+S  G V+++                            +EA  +F  +++
Sbjct: 114 SWNSILAAYAQSSEGVVENV----------------------------KEAFLLFRILRQ 145

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           D    +  T    L  C     +   +  HG      L G+ FV  AL ++Y K G++ +
Sbjct: 146 DVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKE 205

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT---VSNILGA 266
            R LF+ M  R++V WNLM+  YL+ G  ++ IDL       GL+P+E+T   +S I G 
Sbjct: 206 GRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGD 265

Query: 267 CFQTGRI------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
             + G++      +DA  +  +I          ++ GY   G+    L  F +M+  D+ 
Sbjct: 266 DSEAGQVKSFENGNDASAVSEIISR------NKILSGYLHAGQYSALLKCFMDMVESDLE 319

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            D+ +   V+++  +L SL  GQ VH  A+ LG+D  L VS++LI+MYCK      A TV
Sbjct: 320 CDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTV 379

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           FN M  R+++SWNS+I G AQ+  ++EA+ L+ +LL+  LKPD +T  SVL A
Sbjct: 380 FNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKA 432



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 140/545 (25%), Positives = 244/545 (44%), Gaps = 84/545 (15%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH------------------- 100
           F+   L++ Y K GK+   R LF++MP RD++ WN +L A+                   
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTS 247

Query: 101 -------------------ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
                              + +G V+      D   + + +S N  ++G+ + G     L
Sbjct: 248 GLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALL 307

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           + F  M +   E    T +  L    +L  L  G+Q+H   +   L   + V N+L +MY
Sbjct: 308 KCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 367

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K  +I  AR +F+ M+ R+L+SWN +I+G  ++    + + LF ++   GL PD  T++
Sbjct: 368 CKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMT 427

Query: 262 NILGAC--------------------------FQTGRIDDAGRLFHVIKEK--------- 286
           ++L A                           F +  + DA      +KE          
Sbjct: 428 SVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNF 487

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W  M+ GYTQ+      L LF  M  +  R D F++++V+ +C  L ++  G+ VH
Sbjct: 488 DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
             A+  G D DL VSS ++DMY KCG    A   F+ +P  + V+W ++I+G  +NG++ 
Sbjct: 548 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEE 607

Query: 407 EALALYDKLLQENLKPDSFTFVSV--LSACLHADLFERG-QNHFDSISAVHGITPSLDHY 463
            AL ++ ++    + PD FT  ++   S+CL A   E+G Q H +++       P +   
Sbjct: 608 RALHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIHANALKLNCTSDPFVG-- 663

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
             ++++  +   +D A  L K +    N   W+ +L   A  G+   G+ A +   ++E 
Sbjct: 664 TSLVDMYAKCGSIDDAYCLFKRI-EMMNITAWNAMLVGLAQHGE---GKEALQLFKQMES 719

Query: 524 INAGP 528
           +   P
Sbjct: 720 LGIKP 724



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 129/290 (44%), Gaps = 22/290 (7%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           DL  GK  H +I+        F+ N L  MY+K G +  AR +FD+M  R+LVSWN +++
Sbjct: 61  DLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILA 120

Query: 231 GYLKNGQP-----KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH---- 281
            Y ++ +      K+   LF+ ++   +    +T+S +L  C  +G +  A   FH    
Sbjct: 121 AYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CASESFHGYAC 179

Query: 282 -VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK----- 335
            +  + D+     ++  Y + GK ++  +LF EM   DV      + + +    K     
Sbjct: 180 KIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAID 239

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L+S +H   +H   + L +   +    +           +DA  V        ++S N +
Sbjct: 240 LSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAV------SEIISRNKI 293

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
           ++GY   GQ    L  +  +++ +L+ D  TF+ VL+  +  D    GQ 
Sbjct: 294 LSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQ 343



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 81/168 (48%), Gaps = 7/168 (4%)

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           + L  G+  H + + L  + +  + + LI MY KCG    A  VF+ MP R++VSWNS++
Sbjct: 60  SDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSIL 119

Query: 397 NGYAQNGQDL-----EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
             YAQ+ + +     EA  L+  L Q+ +     T   +L  CLH+  +      F   +
Sbjct: 120 AAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG-YVCASESFHGYA 178

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
              G+         ++N+  +   V +   L + +P++ + ++W+ +L
Sbjct: 179 CKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLML 225



 Score = 45.4 bits (106), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 4/108 (3%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI- 118
           F+   L+  YAK G +  A  LF ++ + +I +WNA+L   A+ G  ++   LF +M   
Sbjct: 661 FVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESL 720

Query: 119 ---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
               D V++   ++  ++ G   EA +    M +D     +  H S L
Sbjct: 721 GIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 373/639 (58%), Gaps = 37/639 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ + ++GSV   R++F +M   D +S+NT I+G    G    ++ +F  + +D   
Sbjct: 974  NCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLL 1033

Query: 154  PTDYTHVSALNACAQLLD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  +T  S L AC+ L        QIH   +   +  + FV  AL D+Y+K G++++A +
Sbjct: 1034 PDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEF 1093

Query: 213  LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN---------- 262
            LF   +  +L SWN ++ GY+ +G   K + L+  MQ  G   D++T+ N          
Sbjct: 1094 LFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVG 1153

Query: 263  -------------------------ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                     +L    + G ++ A R+F  I   D+V WTTMI G
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              +NG+EE AL  +++M    V+PD+++ +++V +C+ L +L  G+ +H   V L    D
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
              V ++L+DMY KCG  +DA  +F    TR + SWN+MI G AQ+G   EAL  +  +  
Sbjct: 1274 PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKS 1333

Query: 418  ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              + PD  TF+ VLSAC H+ L      +F S+   +GI P ++HY+C+++ L R+  ++
Sbjct: 1334 RGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIE 1393

Query: 478  KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            +A  +I S+P + ++ ++ TLL+ C ++ D + G+  A  L  LEP ++  Y++LSN+YA
Sbjct: 1394 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1453

Query: 538  ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
            A  +WE+VAS R+ M+  NVKK   +SW+++ NKVH FV+ DR+H ET++IY ++  ++K
Sbjct: 1454 AANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1513

Query: 598  KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            +++E G+ P+T   L D +EE+K  S+ YHSEKLA+AY L+K P   T +R++KN+RVCG
Sbjct: 1514 RIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTT-LRVIKNLRVCG 1572

Query: 658  DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K+ S +  R I+LRD+NRFHHF  G CSC D W
Sbjct: 1573 DCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 120/408 (29%), Positives = 195/408 (47%), Gaps = 41/408 (10%)

Query: 37   NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP--LRDIISWN 94
            +D+ L KR  + +  + + P+  F+ N L+  YAK G L  AR LFD  P   RD+++WN
Sbjct: 670  SDLSLGKRAHARILTSGHHPDR-FVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWN 728

Query: 95   ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            A+LS                            A+A  A+K  S +   +F  +++     
Sbjct: 729  AILS----------------------------ALAAHADK--SHDGFHLFRLLRRSVVST 758

Query: 155  TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            T +T       C         + +HG  V   L  +VFV  AL ++YAK G I +AR LF
Sbjct: 759  TRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLF 818

Query: 215  DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            D M  R++V WN+M+  Y+      + + LF E    G  PD+VT+  +         I 
Sbjct: 819  DGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNIL 878

Query: 275  D-------AGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +       A +LF    +  D + W   +  + Q G+  +A+  F +M++  V  D  + 
Sbjct: 879  ELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTF 938

Query: 327  SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
              +++  A L  L  G+ +HG  +  G+D  + V + LI+MY K G    A +VF  M  
Sbjct: 939  VVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNE 998

Query: 387  RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             +++SWN+MI+G   +G +  ++ ++  LL+++L PD FT  SVL AC
Sbjct: 999  VDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRAC 1046



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 147/607 (24%), Positives = 274/607 (45%), Gaps = 75/607 (12%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+    AL++ +A+ G +++ R LFD M +RD V +N  +  + +     EA+ +FS   
Sbjct: 794  DVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFH 853

Query: 149  KDRFEPTDYT--HVSALNACAQ-LLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKG 204
            +  F P D T   +S +  C + +L+L++ K    K+ +  + G +V V N     + + 
Sbjct: 854  RTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQR 913

Query: 205  GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL----GLNPDEVTV 260
            GE  +A   F  M N  +    L     L       C++L +++  +    GL+   V+V
Sbjct: 914  GEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLD-QVVSV 972

Query: 261  SNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
             N L   + + G +  A  +F  + E D + W TMI G T +G EE ++ +F  +L + +
Sbjct: 973  GNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSL 1032

Query: 320  RPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
             PD+F+++SV+ +C+ L   Y+    +H  A+  GV  D  VS+ALID+Y K G  ++A 
Sbjct: 1033 LPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAE 1092

Query: 379  TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
             +F      ++ SWN++++GY  +G   +AL LY  + +   + D  T V+   A     
Sbjct: 1093 FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLV 1152

Query: 439  LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
              ++G+    ++    G    L   + ++++  +  +++ A  +   +P  P+ + W+T+
Sbjct: 1153 GLKQGK-QIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTM 1210

Query: 499  LSVCAMKGDIKHGEMAARH--LFELEP-----------------------INAG------ 527
            +S C   G  +H         L +++P                       I+A       
Sbjct: 1211 ISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNC 1270

Query: 528  ---PYIMLS--NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
               P++M S  +MYA CG  ED    R   K  N ++ A+++ + +    H         
Sbjct: 1271 AFDPFVMTSLVDMYAKCGNIEDA---RGLFKRTNTRRIASWNAMIVGLAQHGNA------ 1321

Query: 583  PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY---CLIK 639
                   +E  +  K ++  G  P+    +        V S C HS  ++ AY     ++
Sbjct: 1322 -------KEALQFFKYMKSRGVMPDRVTFI-------GVLSACSHSGLVSEAYENFYSMQ 1367

Query: 640  KPHGVTP 646
            K +G+ P
Sbjct: 1368 KNYGIEP 1374



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/231 (31%), Positives = 125/231 (54%), Gaps = 5/231 (2%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+   + +L  + + G ++  R +F ++P  D V++ T I+G    G    AL  + +M+
Sbjct: 1172 DLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMR 1231

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              + +P +YT  + + AC+ L  L +G+QIH  IV  N   + FV  +L DMYAK G I+
Sbjct: 1232 LSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIE 1291

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
             AR LF R N R + SWN MI G  ++G  K+ +  F+ M+  G+ PD VT   +L AC 
Sbjct: 1292 DARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACS 1351

Query: 269  QTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
             +G + +A   F+ ++     E +   ++ ++   ++ G+ E+A  + + M
Sbjct: 1352 HSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 151/380 (39%), Gaps = 79/380 (20%)

Query: 171  DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLM 228
            DL  GK+ H +I+      + FV N L  MYAK G +  AR LFD     NR+LV+WN +
Sbjct: 671  DLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAI 730

Query: 229  ISGY------------------------------------LKNGQPKKCIDLFQEMQLLG 252
            +S                                      L +  P     L      +G
Sbjct: 731  LSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIG 790

Query: 253  LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
            L  D      ++    + G I +A  LF  +  +D V W  M+  Y     E +A++LF+
Sbjct: 791  LQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFS 850

Query: 313  EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            E      RPD  ++ ++             +VV  K  +L +      ++ L  MY    
Sbjct: 851  EFHRTGFRPDDVTLRTL------------SRVVKCKKNILELKQFKAYATKLF-MY---- 893

Query: 373  VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              DD           +V+ WN  ++ + Q G+  EA+  +  ++   +  D  TFV +L+
Sbjct: 894  -DDDG---------SDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLT 943

Query: 433  ACLHADLFERGQNHFDSISAVHGIT--PSLDHYA----CMINLLGRSSDVDKAVDLIKSL 486
                 +  E G+        +HGI     LD       C+IN+  ++  V +A  +   +
Sbjct: 944  VVAGLNCLELGKQ-------IHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQM 996

Query: 487  PHKPNSLIWSTLLSVCAMKG 506
             ++ + + W+T++S C + G
Sbjct: 997  -NEVDLISWNTMISGCTLSG 1015



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 9/147 (6%)

Query: 23   EEAYTQLVLDCTRVNDVELAKRLQSHM-DLN-FYEPNTTFLHNRLLHFYAKSGKLFYARD 80
            E  +  LV  C+ +  +E  +++ +++  LN  ++P   F+   L+  YAK G +  AR 
Sbjct: 1239 EYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP---FVMTSLVDMYAKCGNIEDARG 1295

Query: 81   LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGF 136
            LF +   R I SWNA++   A+ G+ ++    F  M  R    D V++   ++  ++ G 
Sbjct: 1296 LFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGL 1355

Query: 137  SREALQVFSRMQKDRFEPTDYTHVSAL 163
              EA + F  MQK+     +  H S L
Sbjct: 1356 VSEAYENFYSMQKNYGIEPEIEHYSCL 1382


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/645 (35%), Positives = 377/645 (58%), Gaps = 39/645 (6%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+   N+L++ +++ G     R +F+ M   D +S+N+ I+  A      E++ +F  + 
Sbjct: 938  DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 997

Query: 149  KDRFEPTDYTHVSALNACAQLLD-LRRGKQIH-GKIVVGNLGGNVFVRNALTDMYAKGGE 206
             +  +P  +T  S L AC+ L+D L   +QIH   +  GN+  + FV   L D+Y+K G+
Sbjct: 998  HEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIA-DSFVATTLIDVYSKSGK 1056

Query: 207  IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            +++A +LF   ++ +L  WN M+ GY+     KK ++LF  +   G   D++T++    A
Sbjct: 1057 MEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKA 1116

Query: 267  C-----------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
            C                                    + G + +AG +F+ I   D+V W
Sbjct: 1117 CGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW 1176

Query: 292  TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            T+MI G   NG E+ AL +++ M    V PD+++ ++++ + + + +L  G+ +H   + 
Sbjct: 1177 TSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK 1236

Query: 352  LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            L    D  V ++L+DMY KCG  +DA+ +F  M  RN+  WN+M+ G AQ+G   EA+ L
Sbjct: 1237 LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNL 1296

Query: 412  YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
            +  +    ++PD  +F+ +LSAC HA L      +  S+   +GI P ++HY+C+++ LG
Sbjct: 1297 FKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALG 1356

Query: 472  RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
            R+  V +A  +I+++P K ++ I   LL  C ++GD++ G+  A  LF LEP ++  Y++
Sbjct: 1357 RAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVL 1416

Query: 532  LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
            LSN+YAA  RW+DV   R  MK KNVKK   +SWI++ N +H FV +DR+HP+ +IIY++
Sbjct: 1417 LSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDK 1476

Query: 592  LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
            + +++K ++E G+ P+T+ VL D ++EEK +S+ YHSEKLA+AY LI  P   T IR++K
Sbjct: 1477 VEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTT-IRVIK 1535

Query: 652  NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            N+RVCGDCH  +K+ S +  R I+LRD+NRFHHF  G CSC D W
Sbjct: 1536 NLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 185/385 (48%), Gaps = 36/385 (9%)

Query: 60   FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            FL N LL  Y+K G L  AR +FD  P RD+++WNA+L A+A S                
Sbjct: 657  FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVD-------------- 702

Query: 120  DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                        +N G ++E L +F  ++      T  T    L  C     L   + +H
Sbjct: 703  ------------SNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVH 750

Query: 180  GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
            G  +   L  +VFV  AL ++Y+K G +  AR LFD M  R++V WN+M+ GY++ G  K
Sbjct: 751  GYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEK 810

Query: 240  KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD----------AGRLFHVIKEKDNV 289
            +   LF E    GL PDE +V  IL    +    +           A +L       D  
Sbjct: 811  EAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDNPDVF 870

Query: 290  CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            CW   +      G    A+  F  M   ++  D  ++  V+++ A    L  G+ VHG A
Sbjct: 871  CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIA 930

Query: 350  VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
            V  G+D D+ V+++L++MY K G    A  VFN M   +++SWNSMI+  AQ+  + E++
Sbjct: 931  VKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESV 990

Query: 410  ALYDKLLQENLKPDSFTFVSVLSAC 434
             L+  LL E LKPD FT  SVL AC
Sbjct: 991  NLFIDLLHEGLKPDHFTLASVLRAC 1015



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 125/556 (22%), Positives = 228/556 (41%), Gaps = 119/556 (21%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+    AL++ +++ G ++D R LFD M  RD V +N  + G+   G  +EA Q+FS   
Sbjct: 761  DVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFH 820

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +    P +++    LN  +++                                      D
Sbjct: 821  RSGLRPDEFSVQLILNGVSEV------------------------------------NWD 844

Query: 209  KARWLFDRM-----------NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            + +WL D++           +N ++  WN  +S  L  G     I+ F  M  L ++ D 
Sbjct: 845  EGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDA 904

Query: 258  VTVSNIL----------------GACFQTGRIDD-------------------AGRLFHV 282
            VT+  +L                G   ++G   D                   A  +F+ 
Sbjct: 905  VTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFND 964

Query: 283  IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA-SLYH 341
            +K  D + W +MI    Q+  EE+++ LF ++L E ++PD F+++SV+ +C+ L   L  
Sbjct: 965  MKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNI 1024

Query: 342  GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
             + +H  A+  G   D  V++ LID+Y K G  ++A  +F      ++  WN+M+ GY  
Sbjct: 1025 SRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYII 1084

Query: 402  NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISA-----VHG 455
                 +AL L+  + +   K D  T  +   AC    L ++G Q H  +I A     +H 
Sbjct: 1085 GNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 1144

Query: 456  ITPSLDHY---------ACMINLLGRSSDV---------------DKAVDLIKSLPHK-- 489
             +  LD Y           + N +    DV               D+A+ +   +     
Sbjct: 1145 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 1204

Query: 490  -PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVA 546
             P+   ++TL+   +    ++ G     ++ +L+ + + P++   L +MYA CG  ED  
Sbjct: 1205 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCV-SDPFVGTSLVDMYAKCGNIEDAY 1263

Query: 547  SIRSSMKSKNVKKFAA 562
             +   M  +N+  + A
Sbjct: 1264 RLFKKMNVRNIALWNA 1279



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 167/386 (43%), Gaps = 69/386 (17%)

Query: 59   TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            +F+   L+  Y+KSGK+  A  LF      D+  WNA++  +                  
Sbjct: 1041 SFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYI----------------- 1083

Query: 119  RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                          N G  ++AL++FS + K   +    T  +A  AC  L+ L +GKQI
Sbjct: 1084 ------------IGNDG--KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQI 1129

Query: 179  HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            H   +      ++ V + + DMY K G++  A  +F+ ++  + V+W  MISG + NG  
Sbjct: 1130 HAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNE 1189

Query: 239  KKCIDLFQEMQLLGLNPDEVTVSNILGA--CF---------------------------- 268
             + + ++  M+   + PDE T + ++ A  C                             
Sbjct: 1190 DQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSL 1249

Query: 269  -----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                 + G I+DA RLF  +  ++   W  M+VG  Q+G  E+A+ LF  M S  + PD+
Sbjct: 1250 VDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDR 1309

Query: 324  FSISSVVSSC--AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
             S   ++S+C  A L S  + + +H      G++ ++   S L+D   + G+  +A  V 
Sbjct: 1310 VSFIGILSACSHAGLTSEAY-EYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVI 1368

Query: 382  NMMPTRNVVSWNSMINGYAQNGQDLE 407
              MP +   S N  + G  +   D+E
Sbjct: 1369 ETMPFKASASINRALLGACRIQGDVE 1394



 Score = 99.0 bits (245), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 84/373 (22%), Positives = 158/373 (42%), Gaps = 67/373 (17%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +L  GK  H +IVV    G+ F+ N L  MY+K G +  AR +FD    R+LV+WN ++ 
Sbjct: 636 NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 231 GYL-----KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------------- 270
            Y       +G  ++ + LF+ ++    +   +T++ +L  C  +               
Sbjct: 696 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755

Query: 271 --------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                               GR+ DA  LF  ++E+D V W  M+ GY Q G E++A  L
Sbjct: 756 IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 815

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F+E     +RPD+FS+  +++  ++                +  D+   ++  +     K
Sbjct: 816 FSEFHRSGLRPDEFSVQLILNGVSE----------------VNWDEGKWLADQVQAYAAK 859

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
             ++DD   VF          WN  ++     G +  A+  +  +   N+  D+ T + V
Sbjct: 860 LSLSDDNPDVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVV 910

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L+A    D  E G+     I+   G+   +     ++N+  +      A ++   + H  
Sbjct: 911 LAAVAGTDDLELGK-QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL- 968

Query: 491 NSLIWSTLLSVCA 503
           + + W++++S CA
Sbjct: 969 DLISWNSMISSCA 981



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 5/145 (3%)

Query: 23   EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
            E  +  L+   + V  +E  ++L +++ +     +  F+   L+  YAK G +  A  LF
Sbjct: 1208 EYTFATLIKASSCVTALEQGRQLHANV-IKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLF 1266

Query: 83   DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSR 138
             KM +R+I  WNA+L   A+ G+ ++   LF  M       D VS+   ++  ++ G + 
Sbjct: 1267 KKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTS 1326

Query: 139  EALQVFSRMQKDRFEPTDYTHVSAL 163
            EA +    M  D     +  H S L
Sbjct: 1327 EAYEYLHSMPNDYGIEPEIEHYSCL 1351


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/703 (34%), Positives = 382/703 (54%), Gaps = 68/703 (9%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C  + D+   K+L S++      P+   +   LL  Y K G +  A ++F      
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDY-IIEGSLLDLYVKCGVIVEALEIFKSGDRT 308

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++ WN +L A+   G + DL   FD                            +F +M 
Sbjct: 309 NVVLWNLMLVAY---GQISDLAKSFD----------------------------LFCQMV 337

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P ++T+   L  C    ++  G+QIH   +      +++V   L DMY+K G +D
Sbjct: 338 AAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLD 397

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR + + +  +++VSW  MI+GY+++   K+ ++ F++MQL G+ PD + +++ + AC 
Sbjct: 398 KARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACA 457

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR  +A  LF  I+ KD + W  
Sbjct: 458 GIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNG 517

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+ G+ Q+G  E+AL +F +M    V+ + F+  S +S+ A LA +  G+ +H   +  G
Sbjct: 518 MVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTG 577

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              +  V++ALI +Y KCG  +DA   F  M  RN VSWN++I   +Q+G  LEAL L+D
Sbjct: 578 CTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFD 637

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE LKP+  TF+ VL+AC H  L E G  +F S+S+ HGI P  DHYAC++++LGR+
Sbjct: 638 QMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRA 697

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   ++ +P   N+++W TLLS C +  +I+ GE+AA++L ELEP ++  Y++LS
Sbjct: 698 GQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLS 757

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N YA  G+W     +R  MK + V+K    SWIE+ N VH F   DR HP    IY+ L+
Sbjct: 758 NAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLA 817

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  +L + G+      + H+ ++E+K  +   HSEKLA+A+ L+  P  + P+R++KN+
Sbjct: 818 DLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSM-PLRVIKNL 876

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH +MKF S+++GR I+LRD  RFHHF  GNCSC D W
Sbjct: 877 RVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 241/472 (51%), Gaps = 40/472 (8%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G+L +A+ ++ +    + +  NAL++ + R GS+     +F +MP  D V++NT I+ 
Sbjct: 160 EQGRLVHAQ-VYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISR 218

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
            A  G    AL++F  M+   + P   T  S L ACA + DL +GKQ+H  ++   +  +
Sbjct: 219 HAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPD 278

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
             +  +L D+Y K G I +A  +F   +  N+V WNLM+  Y +     K  DLF +M  
Sbjct: 279 YIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVA 338

Query: 251 LGLNPDEVTVSNILGACFQTGRI-----------------------------------DD 275
            G+ P+E T   +L  C   G I                                   D 
Sbjct: 339 AGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDK 398

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+  V++ KD V WT+MI GY Q+   ++AL  F +M    + PD   ++S +S+CA 
Sbjct: 399 ARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAG 458

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           + ++  GQ +H +  V G   D+ + +AL+++Y +CG + +A+++F  +  ++ ++WN M
Sbjct: 459 IKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGM 518

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVH 454
           ++G+AQ+G   EAL ++ K+ Q  +K + FTFVS +SA  + AD+ +  Q H   I    
Sbjct: 519 VSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKT-- 576

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           G T   +    +I+L G+   ++ A      +  + N + W+T+++ C+  G
Sbjct: 577 GCTSETEVANALISLYGKCGSIEDAKMQFFEMSER-NHVSWNTIITSCSQHG 627



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 215/453 (47%), Gaps = 37/453 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D I+ N L+  +A+ G VQ  R +F+++  RD+VS+   ++G+A  G   EA+ ++ +M 
Sbjct: 76  DRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMH 135

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                PT Y   S L+AC +     +G+ +H ++          V NAL  +Y + G + 
Sbjct: 136 CSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLS 195

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  M   + V++N +IS + + G  +  +++F+EM+L G  PD VT++++L AC 
Sbjct: 196 LAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACA 255

Query: 269 QTGRIDDAGRL--------------------------------FHVIKEKDN---VCWTT 293
             G ++   +L                                  + K  D    V W  
Sbjct: 256 SIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNL 315

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+V Y Q      +  LF +M++  VRP++F+   ++ +C     +  G+ +H  ++  G
Sbjct: 316 MLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTG 375

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + D+ VS  LIDMY K G  D A  +  ++  ++VVSW SMI GY Q+    EAL  + 
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFK 435

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +    + PD+    S +SAC       +GQ    S   V G +  +  +  ++NL  R 
Sbjct: 436 DMQLFGIWPDNIGLASAISACAGIKAMRQGQ-QIHSRVYVSGYSADVSIWNALVNLYARC 494

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               +A  L +++ HK + + W+ ++S  A  G
Sbjct: 495 GRSKEAFSLFEAIEHK-DKITWNGMVSGFAQSG 526



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 134/565 (23%), Positives = 240/565 (42%), Gaps = 90/565 (15%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC-AQLLDLRR 174
           M  R + S N ++ GF       + L +F+   +            AL  C   +     
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
              IH K +   LG +    N L D+YAK G + +AR +F++++ R+ VSW  M+SGY +
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR----------------- 272
           NG  ++ + L+ +M   G+ P    +S++L AC     F+ GR                 
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVV 180

Query: 273 -------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                        +  A R+F  +   D V + T+I  + Q G  E AL +F EM     
Sbjct: 181 GNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGW 240

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD  +I+S++++CA +  L  G+ +H   +  G+  D ++  +L+D+Y KCGV  +A  
Sbjct: 241 TPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F      NVV WN M+  Y Q     ++  L+ +++   ++P+ FT+  +L  C +A  
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 440 FERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--------- 489
              G Q H  SI    G    +     +I++  +   +DKA  +++ L  K         
Sbjct: 361 INLGEQIHLLSIKT--GFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMI 418

Query: 490 -------------------------PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEP 523
                                    P+++  ++ +S CA    ++ G ++ +R       
Sbjct: 419 AGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYS 478

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            +   +  L N+YA CGR ++  S+  +++ K+       +W   +  V  F        
Sbjct: 479 ADVSIWNALVNLYARCGRSKEAFSLFEAIEHKD-----KITW---NGMVSGFAQSG---- 526

Query: 584 ETEIIYEELSKLIKKLQEAGFSPNT 608
               +YEE  ++  K+ +AG   N 
Sbjct: 527 ----LYEEALEVFIKMYQAGVKYNV 547


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/623 (37%), Positives = 368/623 (59%), Gaps = 38/623 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R LF ++   +   +NT I G  +     +A++ +  M+ + F P ++T    L ACA+L
Sbjct: 66  RFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARL 125

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           LDL+ G +IH  +V G    +VFV+ +L  +YAK G ++ A  +FD + ++N+VSW  +I
Sbjct: 126 LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAII 185

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ-------------------- 269
           SGY+  G+ ++ ID+F+ +  + L PD  T+  +L AC Q                    
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMV 245

Query: 270 ---------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                           G ++ A  +F  + EKD V W  MI GY  NG  ++A+ LF +M
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
             E+V+PD +++  V+S+CA+L +L  G+ V G         + ++ +ALID+Y KCG  
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             AW VF  M  ++ V WN++I+G A NG    +  L+ ++ +  +KPD  TF+ +L  C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            HA L + G+ +F+S+     +TPS++HY CM++LLGR+  +D+A  LI+++P + N+++
Sbjct: 426 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 485

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LL  C +  D +  E+A + L ELEP N+G Y++LSN+Y+A  +W++ A +R SM  
Sbjct: 486 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 545

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           K ++K    SWIE+D  VH+F+  D+ HP +E IY +L +L KK++ AG+ P T  VL D
Sbjct: 546 KRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFD 605

Query: 615 TQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
            +EEEK   +  HSEKLA+A+ LI   P  V  IR++KN+RVCGDCH+ +K  S I GR 
Sbjct: 606 IEEEEKEHFLGCHSEKLAIAFGLISATPTAV--IRVVKNLRVCGDCHMAIKLISSITGRE 663

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I +RD+NRFH F  G+CSC D W
Sbjct: 664 ITVRDNNRFHCFREGSCSCNDYW 686


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/688 (35%), Positives = 385/688 (55%), Gaps = 48/688 (6%)

Query: 44  RLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS 103
           ++Q H  L   E  TT    + +H       LF      D      I+++ AL      S
Sbjct: 37  QIQLHPCLLSLEKCTTMSQLKQIHAQMLRTCLF-----VDPFSASKIVAFCAL----HDS 87

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           GS+   R +F+++P   + + N+ I G+ NK   R+A+  +  M     +P  +T  S  
Sbjct: 88  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 147

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            +C  L +   GKQ+H          + +++N L +MY+  G +  AR +FD+M N+++V
Sbjct: 148 KSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR-----I 273
           SW  MI  Y +   P + I LF+ M++  + P+E+T+ N+L AC      +T +     I
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYI 264

Query: 274 DDAGRLFHVI-------------------------KEKDNVCWTTMIVGYTQNGKEEDAL 308
           D+ G  FH +                          EK+  CW  MI G+ ++   E+AL
Sbjct: 265 DETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEAL 324

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            LFNEM    V+ DK +++S++ +C  L +L  G+ +H       ++ D+ + +AL+DMY
Sbjct: 325 SLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMY 384

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            KCG  + A  VF  MP ++V++W ++I G A  GQ L+AL L+ ++    +KPD+ TFV
Sbjct: 385 AKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFV 444

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            VL+AC HA L   G  +F+S+   +GI PS++HY CM+++LGR+  + +A DLI+++P 
Sbjct: 445 GVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPM 504

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
            P+  +   LLS C + G++   E AA+ L EL+P N G Y++LSN+Y++   WE    +
Sbjct: 505 APDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKM 564

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           R  M  +N+KK    S IE+   VH+FV  D +HP++  IYE L  ++++L+ AG+ P+ 
Sbjct: 565 RELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDK 624

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
             VL D  E+EK   +  HSEKLA+A+ L+    G TPIR++KN+RVC DCH  MKF S+
Sbjct: 625 SEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPG-TPIRVVKNLRVCSDCHSAMKFISE 683

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +  R II+RD NRFHHF  G+CSC+D W
Sbjct: 684 VYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 153/350 (43%), Gaps = 60/350 (17%)

Query: 14  LYSRGQAAT----EEAYTQLVLDCTRVNDVELAKRLQSHMD---LNFYEPNTTFLHNRLL 66
           L+ R + A+    E     ++  C R  D+E AK++  ++D   + F+    T L + L+
Sbjct: 225 LFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFH----TVLTSALM 280

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             Y K G    ARDLF+KMP +++  WN +++ H      +                   
Sbjct: 281 DVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYE------------------- 321

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
                       EAL +F+ MQ    +    T  S L AC  L  L  GK +H  I    
Sbjct: 322 ------------EALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK 369

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           +  +V +  AL DMYAK G I+ A  +F  M  +++++W  +I G    GQ  K ++LF 
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 429

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQN 301
           EMQ+  + PD +T   +L AC   G +++    F+ +  K  +      +  M+    + 
Sbjct: 430 EMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRA 489

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           G+  +A  L   M    + PD F +  ++S+C           +HG  VV
Sbjct: 490 GRIAEAEDLIQNM---PMAPDYFVLVGLLSACR----------IHGNLVV 526


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 254/678 (37%), Positives = 365/678 (53%), Gaps = 69/678 (10%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P  +F++N L++ Y+K  +   A+ L    P R +++W AL++     GSVQ+       
Sbjct: 39  PLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIA-----GSVQN------- 86

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                              G    AL  FS M++D  +P D+T   A  A   L     G
Sbjct: 87  -------------------GRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQ+H   V      +VFV  +  DMY+K G  ++AR +FD M  RN+ +WN  +S  +  
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------FQ 269
           G+    +  F E +  G  P+ +T    L AC                            
Sbjct: 188 GRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVA 247

Query: 270 TGRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
            G ID  G+         +F  I + ++V W +MIV Y QN +EE A ++F     E + 
Sbjct: 248 NGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIE 307

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P  F +SSV+S+CA L+ L  G+ VH  AV   V  ++ V SAL+DMY KCG  +DA   
Sbjct: 308 PTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERA 367

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL--QENLKPDSFTFVSVLSACLHAD 438
           F+ MP RN+V+WN+MI GYA  GQ   A+ L+D++      + P+  TFV VLSAC  A 
Sbjct: 368 FDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAG 427

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
               G   F+S+   +GI P  +HYAC+++LLGR+  V++A   IK +P +P   +W  L
Sbjct: 428 SVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGAL 487

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L    M G  + G++AA +LFEL+P+++G +++LSNM+AA GRWE+   +R  MK   +K
Sbjct: 488 LGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIK 547

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K A  SWI   N VH F ++D +H     I   L+KL  +++ AG+ P+T   L D +EE
Sbjct: 548 KGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE 607

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
           EK   + YHSEK+ALA+ LI  P GV PIRI KN+R+CGDCH  +KF S I+GR II+RD
Sbjct: 608 EKAMEVWYHSEKIALAFGLISIPAGV-PIRITKNLRICGDCHSAIKFISGIVGREIIVRD 666

Query: 679 SNRFHHFVGGNCSCKDNW 696
           +N FH F    CSC+D W
Sbjct: 667 NNLFHRFRDNQCSCRDYW 684



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 89/193 (46%), Gaps = 32/193 (16%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL--LVSSALIDMYCKCGVTDDAWTVFNMM 384
           S+V + C++L    H Q++        +D+ L   + + L++MY K    + A  + ++ 
Sbjct: 15  SAVSTQCSRLGRAAHAQIIKT------LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLT 68

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---------- 434
           P R+VV+W ++I G  QNG+   AL  +  + +++++P+ FTF     A           
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 435 -LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
            +HA   + GQ     IS V     + D Y+       ++   ++A  +   +P + N  
Sbjct: 129 QVHALAVKAGQ-----ISDVFVGCSAFDMYS-------KAGLTEEARKMFDEMPER-NIA 175

Query: 494 IWSTLLSVCAMKG 506
            W+  LS   ++G
Sbjct: 176 TWNAYLSNSVLEG 188



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/267 (20%), Positives = 106/267 (39%), Gaps = 43/267 (16%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
            G   T+   + ++  C  ++ +E+ K + + + +        F+ + L+  Y K G + 
Sbjct: 304 EGIEPTDFMVSSVLSACAGLSVLEVGKSVHT-LAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A   FD+MP R++++WNA++  +A  G       LFD+M                    
Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC------------------ 404

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN- 195
                         R  P   T V  L+AC++   +  G +I  + + G  G      + 
Sbjct: 405 -----------GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIF-ESMRGRYGIEPGAEHY 452

Query: 196 -ALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             + D+  + G +++A     +M  R  VS W  ++      G+ +  +       L  L
Sbjct: 453 ACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE--LGKVAADNLFEL 510

Query: 254 NP----DEVTVSNILGACFQTGRIDDA 276
           +P    + V +SN+  A    GR ++A
Sbjct: 511 DPLDSGNHVLLSNMFAA---AGRWEEA 534


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/634 (37%), Positives = 371/634 (58%), Gaps = 46/634 (7%)

Query: 108 DLRALFDKMPIRDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +L  LF+K   + +V S+N+ IA  A  G S EAL+ FS M+K   +P   T   A+ +C
Sbjct: 103 NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC 162

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           + LLDL  G+Q H + ++     ++FV +AL DMY+K GE+  AR LFD +++RN+VSW 
Sbjct: 163 SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWT 222

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNP--------DEVTVSNILGACFQT-------- 270
            MI+GY++N    + + LF+E  +             D + + ++L AC +         
Sbjct: 223 SMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG 282

Query: 271 ---------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                      G +  + R+F  + E+D + W ++I  Y QNG 
Sbjct: 283 VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342

Query: 304 EEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             +++ +F+ M+ + ++  +  ++S+V+ +CA   S   G+ +H + + +G++ ++ V +
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGT 402

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           ++IDMYCKCG  + A   F+ M  +NV SW++M+ GY  +G   EAL ++ ++    +KP
Sbjct: 403 SIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP 462

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  TFVSVL+AC HA L E G + F ++S    + P ++HY CM++LLGR+  + +A DL
Sbjct: 463 NYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDL 522

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           IK +  +P+ ++W  LL  C M  ++  GE++AR LFEL+P N G Y++LSN+YA  GRW
Sbjct: 523 IKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRW 582

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           EDV  +R  MK+  + K   +S ++I  +VH F+  DR HP+ E IYE L KL  KLQE 
Sbjct: 583 EDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEV 642

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P+   VLHD   EEK   +  HSEKLA+A+ ++    G T I I+KN+RVCGDCH  
Sbjct: 643 GYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTT-IHIIKNLRVCGDCHTA 701

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +KF S I+ R I++RDS RFHHF  G CSC D W
Sbjct: 702 IKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 133/246 (54%), Gaps = 9/246 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RF 152
           N L+ A+A+ G +   R +FD M  RD +S+N+ IA +A  G S E++++F RM KD   
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 359

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
                T  + L ACA     R GK IH +++   L  NVFV  ++ DMY K G+++ AR 
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
            FDRM  +N+ SW+ M++GY  +G  K+ +++F EM + G+ P+ +T  ++L AC   G 
Sbjct: 420 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGL 479

Query: 273 IDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +++    F  +  + +V      +  M+    + G  ++A  L   M    +RPD     
Sbjct: 480 LEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM---KLRPDFVVWG 536

Query: 328 SVVSSC 333
           +++ +C
Sbjct: 537 ALLGAC 542



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 187/408 (45%), Gaps = 70/408 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ + D+   ++      +  +EP+  F+ + L+  Y+K G+L  AR LFD++  R+I+S
Sbjct: 162 CSALLDLHSGRQAHQQALIFGFEPDL-FVSSALVDMYSKCGELRDARTLFDEISHRNIVS 220

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W ++++ + ++        LF +  + +S S                         +   
Sbjct: 221 WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDG---------------------EVCV 259

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P     VS L+AC+++ +    + +HG ++     G++ V N L D YAK GE+  +R 
Sbjct: 260 DPI--AMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRR 317

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQT- 270
           +FD M  R+++SWN +I+ Y +NG   + +++F  M   G +N + VT+S +L AC  + 
Sbjct: 318 VFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSG 377

Query: 271 ----------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                             G+++ A + F  ++EK+   W+ M+ 
Sbjct: 378 SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVA 437

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-----QVVHGKAVV 351
           GY  +G  ++AL +F EM    V+P+  +  SV+++C+    L  G      + H   V 
Sbjct: 438 GYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVE 497

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            GV+        ++D+  + G   +A+ +   M  R + V W +++  
Sbjct: 498 PGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 541


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 373/639 (58%), Gaps = 37/639 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ + ++GSV   R +F +M   D VS+NT I+G A  G    ++ +F  + +    
Sbjct: 945  NCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLL 1004

Query: 154  PTDYTHVSALNACAQLLD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  +T  S L AC+ L        QIH   +   +  + FV   L D+Y+K G++++A +
Sbjct: 1005 PDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEF 1064

Query: 213  LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ--------------------LLG 252
            LF   +  +L SWN M+ GY+ +G   K + L+  MQ                    L+G
Sbjct: 1065 LFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVG 1124

Query: 253  L---------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
            L               N D   +S +L    + G ++ A R+F+ I   D+V WTTMI G
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISG 1184

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              +NG+EE AL  ++ M    V+PD+++ +++V +C+ L +L  G+ +H   V L    D
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
              V ++L+DMY KCG  +DA  +F    T  + SWN+MI G AQ+G   EAL  ++++  
Sbjct: 1245 PFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKS 1304

Query: 418  ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              + PD  TF+ VLSAC H+ L      +F S+  ++GI P ++HY+C+++ L R+  + 
Sbjct: 1305 RGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIR 1364

Query: 478  KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            +A  +I S+P + ++ ++ TLL+ C ++ D + G+  A  L  LEP ++  Y++LSN+YA
Sbjct: 1365 EAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYA 1424

Query: 538  ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
            A  +WE+VAS R+ M+  NVKK   +SW+++ NKVH FV+ DR+H ET++IY ++  ++K
Sbjct: 1425 AANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMK 1484

Query: 598  KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            +++E G+ P+T   L D +EE+K  S+ YHSEKLA+AY L+K P   T +R++KN+RVCG
Sbjct: 1485 RIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTT-LRVIKNLRVCG 1543

Query: 658  DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K+ S +  R ++LRD+NRFHHF  G CSC D W
Sbjct: 1544 DCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/413 (30%), Positives = 198/413 (47%), Gaps = 48/413 (11%)

Query: 36   VNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP--LRDIISW 93
             +D+ L KR  + +  + + P+  FL N L+  Y+K G L  AR LFD  P   RD+++W
Sbjct: 639  ASDLPLGKRAHARILTSGHHPDR-FLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTW 697

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            NA+LSAHA            DK                     +R+   +F  +++    
Sbjct: 698  NAILSAHA------------DK---------------------ARDGFHLFRLLRRSFVS 724

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             T +T       C         + +HG  V   L  +VFV  AL ++YAK G I +AR L
Sbjct: 725  ATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVL 784

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
            FD M  R++V WN+M+  Y+  G   + + LF E    GL PD+VT+  +          
Sbjct: 785  FDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNV 844

Query: 268  --FQTGRIDDAG-RLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
              +Q  ++   G +LF    +    D + W   +  + Q G+  +A+  F +M++  V  
Sbjct: 845  LEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVAC 904

Query: 322  DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
            D  +   ++S  A L  L  G+ +HG  V  G+D  + V + LI+MY K G    A TVF
Sbjct: 905  DGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVF 964

Query: 382  NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
              M   ++VSWN+MI+G A +G +  ++ ++  LL+  L PD FT  SVL AC
Sbjct: 965  WQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRAC 1017



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 145/611 (23%), Positives = 270/611 (44%), Gaps = 79/611 (12%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+    AL++ +A+ G +++ R LFD M +RD V +N  +  + + G   EAL +FS   
Sbjct: 761  DVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820

Query: 149  KDRFEPTDYTHVS---ALNACAQLLD--LRRGKQIHGKIVV---GNLGGNVFVRNALTDM 200
            +    P D T  +    + +   +L+  L++ K    K+ +    + G +V   N     
Sbjct: 821  RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSDVIAWNKTLSW 880

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL----GLNPD 256
            + + GE  +A   F  M N  +    L     L       C++L +++  +    GL+  
Sbjct: 881  FLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLD-Q 939

Query: 257  EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
             V+V N L   + +TG +  A  +F  + E D V W TMI G   +G EE ++ +F ++L
Sbjct: 940  VVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLL 999

Query: 316  SEDVRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
               + PD+F+++SV+ +C+ L    H    +H  A+  GV  D  VS+ LID+Y K G  
Sbjct: 1000 RGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKM 1059

Query: 375  DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            ++A  +F      ++ SWN+M++GY  +G   +AL LY  + +   + +  T  +   A 
Sbjct: 1060 EEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAA 1119

Query: 435  LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
                  ++G+    ++    G    L   + ++++  +  +++ A  +   +P  P+ + 
Sbjct: 1120 GGLVGLKQGK-QIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIP-SPDDVA 1177

Query: 495  WSTLLSVCAMKGDIKHGEMAARH--LFELEP-----------------------INAG-- 527
            W+T++S C   G  +H      H  L +++P                       I+A   
Sbjct: 1178 WTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTV 1237

Query: 528  -------PYIMLS--NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
                   P++M S  +MYA CG  ED    R   K  N  + A+++ + +    H     
Sbjct: 1238 KLNCAFDPFVMTSLVDMYAKCGNIEDA---RGLFKRTNTSRIASWNAMIVGLAQHGNA-- 1292

Query: 579  DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY--- 635
                       EE  +  ++++  G +P+    +        V S C HS  ++ AY   
Sbjct: 1293 -----------EEALQFFEEMKSRGVTPDRVTFI-------GVLSACSHSGLVSEAYENF 1334

Query: 636  CLIKKPHGVTP 646
              ++K +G+ P
Sbjct: 1335 YSMQKIYGIEP 1345



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 152/377 (40%), Gaps = 72/377 (19%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLM 228
           DL  GK+ H +I+      + F+ N L  MY+K G +  AR LFD     +R+LV+WN +
Sbjct: 641 DLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAI 700

Query: 229 ISGY---------------------------------LKNGQPKKCIDLFQEMQLLGLNP 255
           +S +                                 L +  P     L      +GL  
Sbjct: 701 LSAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQW 760

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           D      ++    + GRI +A  LF  +  +D V W  M+  Y   G E +AL+LF+E  
Sbjct: 761 DVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFN 820

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              +RPD  ++ ++        ++   Q+   KA               + MY       
Sbjct: 821 RTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAY-----------GTKLFMYDDDDDGS 869

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           D            V++WN  ++ + Q G+  EA+  +  ++   +  D  TFV +LS   
Sbjct: 870 D------------VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVA 917

Query: 436 HADLFERGQNHFDSISAVHGIT--PSLDHYA----CMINLLGRSSDVDKAVDLIKSLPHK 489
             +  E G+        +HGI     LD       C+IN+  ++  V +A  +   + ++
Sbjct: 918 GLNCLELGKQ-------IHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM-NE 969

Query: 490 PNSLIWSTLLSVCAMKG 506
            + + W+T++S CA+ G
Sbjct: 970 VDLVSWNTMISGCALSG 986



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 81/163 (49%), Gaps = 10/163 (6%)

Query: 23   EEAYTQLVLDCTRVNDVELAKRLQSH-MDLN-FYEPNTTFLHNRLLHFYAKSGKLFYARD 80
            E  +  LV  C+ +  +E  +++ ++ + LN  ++P   F+   L+  YAK G +  AR 
Sbjct: 1210 EYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDP---FVMTSLVDMYAKCGNIEDARG 1266

Query: 81   LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGF 136
            LF +     I SWNA++   A+ G+ ++    F++M  R    D V++   ++  ++ G 
Sbjct: 1267 LFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGL 1326

Query: 137  SREALQVFSRMQKDRFEPTDYTHVSAL-NACAQLLDLRRGKQI 178
              EA + F  MQK      +  H S L +A ++   +R  +++
Sbjct: 1327 VSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKV 1369



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 18/144 (12%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-- 385
           S++      + L  G+  H + +  G   D  +++ LI MY KCG    A  +F+  P  
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
           +R++V+WN++++ +A   +D     L+  L +  +     T   V   CL          
Sbjct: 691 SRDLVTWNAILSAHADKARD--GFHLFRLLRRSFVSATRHTLAPVFKMCL---------- 738

Query: 446 HFDSISAVHGITPSLDHYACMINL 469
               +SA      SL  YA  I L
Sbjct: 739 ----LSASPSAAESLHGYAVKIGL 758


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/653 (38%), Positives = 377/653 (57%), Gaps = 44/653 (6%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++   AL++ + R GSV +  A+F+ M +R+ VS+N  IA FA  G    A  ++ R
Sbjct: 269 LGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWR 328

Query: 147 MQKDRFEPTDYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           MQ++ F P   T V+AL A   +   DL     +HG I    L G+V V  AL  MY   
Sbjct: 329 MQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGST 388

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ID+AR  FD +  +N+VSWN M++ Y  NG+ ++ ++LF  M+   L P++V+   +L
Sbjct: 389 GAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVL 448

Query: 265 GAC---------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           G C                                  ++G +++A   F     KD+V W
Sbjct: 449 GCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSW 508

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK-AV 350
            T +   +       A+  F  M  E  RPDKF++ SVV  CA L +L  G+ +  + + 
Sbjct: 509 NTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSA 568

Query: 351 VLGVDDDLLVSSALIDMYCKCGVT-DDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLE 407
            + V+ D++V+SA+++M  KCG + D+   +F  MP   +++V+WN+MI  YAQ+G   +
Sbjct: 569 AIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRK 628

Query: 408 ALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYAC 465
           AL L+  + Q + ++PDS TFVSVLS C HA L E G + F     V GI    ++HYAC
Sbjct: 629 ALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYAC 688

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           ++++LGR   + +A D I+ +P   +S++W++LL  C+  GD++ GE AAR   EL   +
Sbjct: 689 LVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSD 748

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK-FAAYSWIEIDNKVHKFVSEDRTHPE 584
           +  Y++LSN+YAA GRWED   +R  M  + VKK     S I + N+VH+F + DR+HP+
Sbjct: 749 SVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRVPGKSSIVVKNRVHEFFARDRSHPQ 808

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           ++ IY EL +L   ++EAG+ P+T+LVLHD +EE+K + + YHSEKLA+A+ LI  PH  
Sbjct: 809 SDAIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRH 868

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF-VGGNCSCKDNW 696
           + IR++KN+RVC DCH   KF + +  R I +RD NRFHHF   G CSC D W
Sbjct: 869 S-IRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 920



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 211/475 (44%), Gaps = 48/475 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA-NKGFSREALQVFSR 146
           RD+    ALL A+ + G V+    +F ++ + D + +N AI   A N      AL +  R
Sbjct: 168 RDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRR 227

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  +   P   + V+ L++C     L   + IH ++      G+V V  AL  MY + G 
Sbjct: 228 MWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGS 287

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-VSNILG 265
           +D++  +F+ M  RN VSWN MI+ + + G       ++  MQ  G  P+++T V+ +  
Sbjct: 288 VDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKA 347

Query: 266 ACF------------------------------------QTGRIDDAGRLFHVIKEKDNV 289
           AC                                      TG ID A   F  I  K+ V
Sbjct: 348 ACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIV 407

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  M+  Y  NG+  +A+ LF  M  + + P+K S  +V+  C  ++     + +H + 
Sbjct: 408 SWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---EARSIHAEV 464

Query: 350 VVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           V  G+   +  +++ ++ M+ + G  ++A   F+    ++ VSWN+ +   +       A
Sbjct: 465 VGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGA 524

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           +  +  +  E  +PD FT VSV+  C      E G++    +SA   +   +   + ++N
Sbjct: 525 ITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMN 584

Query: 469 LLGR-SSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHGEMAARHLFEL 521
           ++ +  S VD+   L   +P     L+ W+T+++  A  G   HG  A + LF +
Sbjct: 585 MVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHG---HGRKALK-LFRI 635



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 198/455 (43%), Gaps = 68/455 (14%)

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           D + P + T    L  C    DL +G+Q+H +IV   L  N  + N L  MY+K   +D 
Sbjct: 19  DDYIPIE-TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDD 77

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL---NPDEVTVSNILGA 266
           A   F  + +R + +WN +I+       P    DL+  M+L       P+++T+  +LGA
Sbjct: 78  ANAAFSALRSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGA 134

Query: 267 CF---------------------------------------------QTGRIDDAGRLFH 281
                                                          + G ++ A  +F 
Sbjct: 135 IASGDPSSSSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFS 194

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEED-ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            I+  D +CW   I+    N +  D AL+L   M  E + P++ S  +++SSC   +SL 
Sbjct: 195 RIQVPDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLP 254

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
             + +H +   LG   D++V++AL+ MY +CG  D++  VF  M  RN VSWN+MI  +A
Sbjct: 255 LARSIHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFA 314

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA---DLFERGQNHFDSISAVHGIT 457
           Q G    A A+Y ++ QE  +P+  TFV+ L A   +   DL E    H     A  G+ 
Sbjct: 315 QCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALH--GWIACAGLE 372

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE--MAA 515
             +     ++ + G +  +D+A     ++P K N + W+ +L+     G  +      AA
Sbjct: 373 GDVMVGTALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGRAREAMELFAA 431

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
                L P N   Y+      A  G  EDV+  RS
Sbjct: 432 MKRQSLAP-NKVSYL------AVLGCCEDVSEARS 459



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 73/294 (24%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  Y  +G +  AR  FD +P ++I+SWNA+L+A+  +G  ++   LF  M  +    +
Sbjct: 381 LVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPN 440

Query: 121 SVSY---------------------------------NTAIAGFANKGFSREALQVFS-- 145
            VSY                                 N  +  FA  G   EA+  F   
Sbjct: 441 KVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDAT 500

Query: 146 -----------------------------RMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                         MQ + F P  +T VS ++ CA L  L  G+
Sbjct: 501 VVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGR 560

Query: 177 QIHGKIVVG-NLGGNVFVRNALTDMYAK-GGEIDKARWLFDRM--NNRNLVSWNLMISGY 232
            I  ++     +  +V V +A+ +M AK G  +D+   LF RM  + ++LV+WN MI+ Y
Sbjct: 561 SIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAY 620

Query: 233 LKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            ++G  +K + LF+ MQ    + PD  T  ++L  C   G ++D    F + +E
Sbjct: 621 AQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLARE 674


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/646 (36%), Positives = 365/646 (56%), Gaps = 40/646 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ + + GS+ D R +FD MP R   ++N+ I+ ++    S EA  +F RMQ
Sbjct: 44  DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 103

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +       T +S L+AC    +L+ GK +   I   +   ++FV  AL  MYA+    +
Sbjct: 104 HEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPE 163

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
            A  +F RM  +NL++W+ +I+ +  +G   + +  F+ MQ  G+ P+ VT         
Sbjct: 164 NAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFT 223

Query: 260 -----------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                                        + N+ G C +TG +D A  +   + E+    
Sbjct: 224 TPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRC-ETGELDVAEVILQEMDEQQITA 282

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I GYT +G+  +AL  +  +  E +  DK +  SV+++C    SL  G+++H  AV
Sbjct: 283 WNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAV 342

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G+D D++V +AL +MY KCG  ++A  +F+ MP R+ VSWN M+  YAQ+G+  E L 
Sbjct: 343 ECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLK 402

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L  K+ QE +K +  TFVSVLS+C HA L   G  +F S+    GI    +HY C+++LL
Sbjct: 403 LIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLL 462

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  + +A   I  +P +P  + W++LL  C +  D+  G++AAR L EL+P N+   +
Sbjct: 463 GRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASV 522

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+Y+  G W++ A +R +M S+ VKK    S I++ NKVH+F   D +HP    IY+
Sbjct: 523 VLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYD 582

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           ++ +L   ++EAG+ P+TK+VLHD  EE+K   + YHSEKLA+A+ LI  P   + + I 
Sbjct: 583 KVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEK-SSLHIF 641

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   KF S I GR I++RD++RFHHF  G+CSCKD W
Sbjct: 642 KNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 182/388 (46%), Gaps = 41/388 (10%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T ++ LN+      LR+GK IH  +       +VFV  AL + Y K G +  AR +FD M
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR 272
             R++ +WN MIS Y  + +  +   +FQ MQ  G   D VT  +IL AC      Q G+
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGK 131

Query: 273 ------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                          ++A ++F  +K+K+ + W+ +I  +  +G
Sbjct: 132 HVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHG 191

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
              +AL  F  M  E + P++ +  S+++     + L     +H      G+DD   +S+
Sbjct: 192 HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSN 251

Query: 363 ALIDMY--CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           AL+++Y  C+ G  D A  +   M  + + +WN +INGY  +G+  EAL  Y +L  E +
Sbjct: 252 ALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAI 311

Query: 421 KPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
             D  TF+SVL+AC  +     G+  H +++    G+   +     + N+  +   ++ A
Sbjct: 312 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC--GLDSDVIVKNALTNMYSKCGSMENA 369

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +  S+P + +++ W+ +L   A  G+
Sbjct: 370 RRIFDSMPIR-SAVSWNGMLQAYAQHGE 396



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 121/241 (50%), Gaps = 13/241 (5%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML E V+ +  +  +V++S     +L  G+ +H          D+ V++AL++ Y KCG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
             DA  VF+ MP R+V +WNSMI+ Y+ + +  EA  ++ ++  E  + D  TF+S+L A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           C++ +  + G++  +SIS     +  LD +    +I +  R    + A  +   +  K N
Sbjct: 121 CVNPENLQHGKHVRESISET---SFELDLFVGTALITMYARCRSPENAAQVFGRMKQK-N 176

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARH--LFELEPI--NAGPYIMLSNMYAACGRWEDVAS 547
            + WS +++  A  G   H   A R+  + + E I  N   +I L N +      E+++ 
Sbjct: 177 LITWSAIITAFADHG---HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR 233

Query: 548 I 548
           I
Sbjct: 234 I 234


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/706 (36%), Positives = 377/706 (53%), Gaps = 103/706 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L   +K G++  AR LFD MP RD  SWN ++ A+A SG + + R LF + PIR  +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++++ I+G+   G   EAL++F  MQ +   P  +T  S L  C+  + L +GKQIH   
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKC 241
           +      N FV   L DMYAK   I +A +LF+   + RN V W  M++GY +NG   K 
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGAC---------------------------------- 267
           I+ F++M+  G+  ++ T  +IL AC                                  
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDM 284

Query: 268 -FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G + +A R+   ++  D V W +MIVG  + G  E+AL LF  M    ++ D+F+ 
Sbjct: 285 YSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            S                              LV++AL+DMY K G  D A+ VF  M  
Sbjct: 345 PS------------------------------LVNNALVDMYAKRGYFDYAFDVFEKMTD 374

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA------------- 433
           ++V+SW S++ G   NG   EAL L+ ++    + PD     +VLSA             
Sbjct: 375 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCG 434

Query: 434 CLHA-----DLFE------------------RGQNHFDSISAVHGITPSLDHYACMINLL 470
           C+       D  E                  RG+++F S+  V+GI P  +HYACMI+LL
Sbjct: 435 CIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLL 494

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GRS  + +A +L+  +  +P++ +W  LL+ C + G+++ GE AA +LFELEP NA PY+
Sbjct: 495 GRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYV 554

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+Y+A G+WE+ A  R  MK + V K    SWIE+ +KVH+F+SEDR+HP T  IY 
Sbjct: 555 LLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYS 614

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           ++ +++  ++EAG+ P+    LHD  EE K   + YHSEKLA+A+ L+  P G  PIRI 
Sbjct: 615 KVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPG-APIRIF 673

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+CGDCH  MK+ S +  R +ILRDSN FHHF  G CSC D W
Sbjct: 674 KNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 719



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 143/318 (44%), Gaps = 23/318 (7%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           HK  +    +   G    +  +  ++  C  ++      ++   +  + +  N  F+ + 
Sbjct: 222 HKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV-FVGSA 280

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  Y+K G L  AR + + M + D +SWN+++    R G  ++  +LF  M +R    D
Sbjct: 281 LVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKID 340

Query: 121 SVSY-----NTAIAGFANKGFSREALQVFSRM-QKDRFEPTDY----THVSALNACAQLL 170
             +Y     N  +  +A +G+   A  VF +M  KD    T       H  +     +L 
Sbjct: 341 EFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLF 400

Query: 171 DLRRGKQIH-GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
              R   IH  +IV+  +     + N+L  MYAK G I+ A  +FD M  +++++W  +I
Sbjct: 401 CEMRIMGIHPDQIVIAAVLSA--LDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALI 458

Query: 230 SGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-EKD 287
            GY +NG+ +   D FQ M ++ G+ P     + ++    ++G++ +A  L + +  + D
Sbjct: 459 VGYAQNGRGR---DYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPD 515

Query: 288 NVCWTTMIVGYTQNGKEE 305
              W  ++     +G  E
Sbjct: 516 ATVWKALLAACRVHGNVE 533



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 31/204 (15%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-------TFLHNRLLHFYAKSGKLFY 77
           ++T LV  C      E A RL   M +    P+        + L N L+  YAK G +  
Sbjct: 379 SWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIED 438

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQD-LRALFDKMPIRDSVS-YNTAIAGFANKG 135
           A  +FD M ++D+I+W AL+  +A++G  +D  +++ +   I+     Y   I      G
Sbjct: 439 ANKVFDSMEIQDVITWTALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSG 498

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV-- 193
              EA ++ ++M     +P      + L AC          ++HG + +G    N     
Sbjct: 499 KLMEAKELLNQMA---VQPDATVWKALLAAC----------RVHGNVELGERAANNLFEL 545

Query: 194 --RNA-----LTDMYAKGGEIDKA 210
             +NA     L+++Y+  G+ ++A
Sbjct: 546 EPKNAVPYVLLSNLYSAAGKWEEA 569


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 252/666 (37%), Positives = 382/666 (57%), Gaps = 42/666 (6%)

Query: 71   KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
            + G+  +A  L      R I   N L++ +A+ G++     +F  M  RD +S+NT I  
Sbjct: 399  RKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITA 458

Query: 131  FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
                G+   A+  +  M+++   P+++  +S L++CA L  L  G+Q+H   V   L  +
Sbjct: 459  LDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD 518

Query: 191  VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP-KKCIDLFQEMQ 249
              V NAL  MY + G + +   +F+ M+  ++VSWN ++     +  P  + + +F  M 
Sbjct: 519  TSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMM 578

Query: 250  LLGLNPDEVTVSNILGA----------------------------------CF-QTGRID 274
              GL P++VT  N L A                                  C+ ++G +D
Sbjct: 579  KSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVD 638

Query: 275  DAGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
               RLF  +   +D + W +MI GY  NG  ++A+     M+  +   D  + S V+++C
Sbjct: 639  SCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNAC 698

Query: 334  AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
            A +A+L  G  +H   +   ++ D++V SAL+DMY KCG  D A  VF+ M  +N  SWN
Sbjct: 699  ASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWN 758

Query: 394  SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
            SMI+GYA++G   +AL +++++ +    PD  TFVSVLSAC HA L ERG ++F+ +   
Sbjct: 759  SMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFELMED- 817

Query: 454  HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM---KGDIKH 510
            +GI P ++HY+C+I+LLGR+ ++DK  + +K +P KPN+LIW T+L  C     +  I  
Sbjct: 818  YGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDL 877

Query: 511  GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
            G  A+R L ELEP N   Y++ S  +AA GRWED A  R++MK   VKK A  SW+ + +
Sbjct: 878  GTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTD 937

Query: 571  KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
             VH F++ DR+HP T+ IYE+L+ LI+K++ AG+ P T+ VLHD +EE K + + YHSEK
Sbjct: 938  GVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEK 997

Query: 631  LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
            LA+A+ L +   G  PIRIMKN+RVCGDCH   ++ S I+GR IILRDS RFHHF  G C
Sbjct: 998  LAVAFVLTRSSSG-GPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKC 1056

Query: 691  SCKDNW 696
            SC D W
Sbjct: 1057 SCGDYW 1062



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 183/440 (41%), Gaps = 78/440 (17%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL N L++ YAK  +L  AR +FD MP R+ +SW  L+S H  SG  +D   LF  M +R
Sbjct: 101 FLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAM-LR 159

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG--KQ 177
           +                                 PT +T  S L AC      R G   Q
Sbjct: 160 EGPG----------------------------CRPTSFTFGSVLRACQDSGPDRLGFAVQ 191

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKG--GEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +HG +       N  V NAL  MY     G    A+ +FD    R+L++WN ++S Y K 
Sbjct: 192 VHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKR 251

Query: 236 GQPKKCIDLFQEMQL----LGLNPDEVTVSNILGACFQT--------------------- 270
           G       LF+ MQ     + L P E T  +++ A + +                     
Sbjct: 252 GDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSS 311

Query: 271 ---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT-QNGKEEDALILFNEM 314
                          G +D+A  ++  +KE++ V    +I G   Q   E  A I     
Sbjct: 312 DLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGAR 371

Query: 315 LSEDVRPDKFSI--SSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKC 371
            S  V  D + +  S++         L  G+ VH   +  G +   + VS+ L++MY KC
Sbjct: 372 DSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKC 431

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  D A  VF +M  R+ +SWN++I    QNG    A+  Y  + Q ++ P +F  +S L
Sbjct: 432 GAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGL 491

Query: 432 SACLHADLFERGQN-HFDSI 450
           S+C    L   GQ  H D++
Sbjct: 492 SSCAGLGLLAAGQQLHCDAV 511



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 160/381 (41%), Gaps = 67/381 (17%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  Y + G++    ++F+ M   D++SWN+++   A S           + PI
Sbjct: 519 TSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASS-----------QAPI 567

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            +SV                   QVFS M K    P   T V+ L A   L  L  GKQI
Sbjct: 568 TESV-------------------QVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQI 608

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQ 237
           H  ++   +  +  V NAL   YAK G++D    LF RM+  R+ +SWN MISGY+ NG 
Sbjct: 609 HSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGH 668

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------------------------- 268
            ++ +D    M       D  T S +L AC                              
Sbjct: 669 LQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESA 728

Query: 269 ------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + GRID A ++FH + +K+   W +MI GY ++G    AL +F EM      PD
Sbjct: 729 LVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPD 788

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +  SV+S+C+    +  G          G+   +   S +ID+  + G  D       
Sbjct: 789 HVTFVSVLSACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMK 848

Query: 383 MMPTR-NVVSWNSMINGYAQN 402
            MP + N + W +++    Q+
Sbjct: 849 RMPMKPNTLIWRTVLVACQQS 869



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 120/520 (23%), Positives = 211/520 (40%), Gaps = 107/520 (20%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           + +H ++V   L  ++F+ N L + YAKG  +D AR +FD M  RN VSW  +ISG++ +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 236 GQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACFQTG--RIDD---------------- 275
           G P+    LF+ M  +  G  P   T  ++L AC  +G  R+                  
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 276 ---------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                                A R+F     +D + W  ++  Y + G       LF  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 315 LSED----VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMY 368
             +D    +RP + +  S++++   L+S   G +      VL  G   DL V SAL+  +
Sbjct: 265 QYDDSGIELRPTEHTFGSLITA-TYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAF 323

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            + G+ D+A  ++  +  RN V+ N +I G  +  Q  EA A      +++   +  T+V
Sbjct: 324 ARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQ-QHGEAAAEIFMGARDSAAVNVDTYV 382

Query: 429 SVLSACLHADLFERG-----QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
            +LSA       E+G     + H   + A H I   +     ++N+  +   +DKA  + 
Sbjct: 383 VLLSAIAEFSTAEQGLRKGREVHAHVLRAGH-IYRKIAVSNGLVNMYAKCGAIDKACRVF 441

Query: 484 KSLPHKPNSLIWSTLLSV--------------CAMKGD----------------IKHGEM 513
           + L    + + W+T+++               C M+ +                   G +
Sbjct: 442 Q-LMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLL 500

Query: 514 AARHLFELEPINAGPYI------MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           AA      + +  G Y+       L  MY  CGR  +   I +SM + +V      SW  
Sbjct: 501 AAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV-----VSW-- 553

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
             N +   ++  +  P TE +     ++   + ++G  PN
Sbjct: 554 --NSIMGVMASSQA-PITESV-----QVFSNMMKSGLVPN 585



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 49/263 (18%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           L+SH++      +   + + L+  Y+K G++ YA  +F  M  ++  SWN+++S +AR  
Sbjct: 715 LRSHLE------SDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYAR-- 766

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
                                         G  R+AL++F  MQ+    P   T VS L+
Sbjct: 767 -----------------------------HGLGRKALEIFEEMQESGESPDHVTFVSVLS 797

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLV 223
           AC+    + RG      +    +   +   + + D+  + GE+DK +    RM  + N +
Sbjct: 798 ACSHAGLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTL 857

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDEVTVSNILGACFQT--GRIDDAGRL 279
            W  ++    ++    K IDL  E    LL L P    V+ +L + F    GR +D  + 
Sbjct: 858 IWRTVLVACQQSKHRAK-IDLGTEASRMLLELEPQN-PVNYVLSSKFHAAIGRWEDTAKA 915

Query: 280 -----FHVIKEKDNVCWTTMIVG 297
                   +K++    W T+  G
Sbjct: 916 RAAMKGAAVKKEAGRSWVTLTDG 938


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/646 (38%), Positives = 371/646 (57%), Gaps = 42/646 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMP--LRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           F+ + LLH Y + G    AR LFD MP   R ++ W+AL++AHA  G  +    L ++M 
Sbjct: 53  FVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMR 112

Query: 118 IRDS------VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQLL 170
            RD       +++N  ++G    G +R+A+   + M  +     D T VS AL+A   + 
Sbjct: 113 -RDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVG 171

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            +  G+Q+HG  V      +  V  AL DMY K G+  +   +FD  ++ ++ S N +I+
Sbjct: 172 LVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIA 231

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           G  +N Q  + + LF+E    G+                               E + V 
Sbjct: 232 GLSRNAQVCEALRLFKEFVDRGV-------------------------------ELNVVS 260

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WT+++    QNGK+ +A+  F EM ++   P+  +I  V+ + A +A+L HG+  H  A+
Sbjct: 261 WTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFAL 320

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G   D+ VSSAL+DMY KCG   DA  +F+ M +RNVVSWN+MI GYA  G+ + A+ 
Sbjct: 321 RKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVW 380

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           ++  +L+   KPD  TF  +L+AC  A L E G+++F  +   +G++P ++HYACM+ LL
Sbjct: 381 MFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLL 440

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +D+A DLI  +P +P++ IW +LL  C + G++   E+AA  LF LEP NAG Y+
Sbjct: 441 GRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYV 500

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA+   W+ V  +R  MK   +KK    SWIEI NKVH  ++ D +HP    I E
Sbjct: 501 LLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIE 560

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           ++++L  ++++ GF P+T  VLHD +E+EK   +  HSEKLA+A  LI    G T +R++
Sbjct: 561 KINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTT-LRVI 619

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+CGDCH  MKF S   GR I +RD+NRFHHF GG CSC D W
Sbjct: 620 KNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 77/157 (49%), Gaps = 12/157 (7%)

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD   + +   SC  L      + +H  A V G+  D  V+S+L+  Y + G T +A  +
Sbjct: 18  PDPHLLPTAFKSCPTLPL---ARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 381 FNMM--PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLHA 437
           F+ M  P R VV W++++  +A  G    A  L +++ ++  ++P+  T+  ++S    +
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 438 DLFERGQNHFDSISAVHG---ITPSLDHYACMINLLG 471
               R ++   +++ +HG   + P     +C ++ +G
Sbjct: 135 G---RARDAVVALATMHGEGLLRPDATGVSCALSAVG 168


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/653 (38%), Positives = 377/653 (57%), Gaps = 44/653 (6%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++   AL++ + R GSV +  A+F+ M +R+ VS+N  IA FA  G    A  ++ R
Sbjct: 265 LGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWR 324

Query: 147 MQKDRFEPTDYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           MQ++ F P   T V+AL A   +   DL     +HG I    L G+V V  AL  MY   
Sbjct: 325 MQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGST 384

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ID+AR  FD +  +N+VSWN M++ Y  NG+ ++ ++LF  M+   L P++V+   +L
Sbjct: 385 GAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVL 444

Query: 265 GAC---------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           G C                                  ++G +++A   F     KD+V W
Sbjct: 445 GCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSW 504

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK-AV 350
            T +   +       A+  F  M  E  RPDKF++ SVV  CA L +L  G+ +  + + 
Sbjct: 505 NTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSA 564

Query: 351 VLGVDDDLLVSSALIDMYCKCGVT-DDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLE 407
            + V+ D++V SA+++M  KCG + D+   +F  MP   +++V+WN+MI  YAQ+G   +
Sbjct: 565 AIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRK 624

Query: 408 ALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYAC 465
           AL L+  + Q + ++PDS TFVSVLS C HA L E G + F     V GI    ++HYAC
Sbjct: 625 ALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYAC 684

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           ++++LGR   + +A D I+ +P   +S++W++LL  C+  GD++ GE AAR   EL   +
Sbjct: 685 LVDVLGRMGYLREAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSD 744

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA-AYSWIEIDNKVHKFVSEDRTHPE 584
           +  Y++LSN+YAA GRWED   +R  M  + VKK A   S I + N+VH+F + DR+HP+
Sbjct: 745 SVGYVVLSNIYAAAGRWEDSIRVREDMAERRVKKRAPGKSSIVVKNRVHEFFARDRSHPQ 804

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           ++ IY EL +L   ++EAG+ P+T+LVLHD +EE+K + + YHSEKLA+A+ LI  PH  
Sbjct: 805 SDEIYAELERLKGLIREAGYVPDTRLVLHDVEEEQKEQLLWYHSEKLAIAFGLISVPHRH 864

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF-VGGNCSCKDNW 696
           + IR++KN+RVC DCH   KF + +  R I +RD NRFHHF   G CSC D W
Sbjct: 865 S-IRVIKNLRVCKDCHTATKFIARVTQREIAVRDCNRFHHFGKDGECSCGDYW 916



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 211/475 (44%), Gaps = 48/475 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA-NKGFSREALQVFSR 146
           RD+    ALL A+ + G V+    +F ++ + D + +N AI   A N      AL +  R
Sbjct: 164 RDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVRR 223

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  +   P   + V+ L++C     L   + IH ++      G+V V  AL  MY + G 
Sbjct: 224 MWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGS 283

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-VSNILG 265
           +D++  +F+ M  RN VSWN MI+ + + G       ++  MQ  G  P+++T V+ +  
Sbjct: 284 VDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKA 343

Query: 266 ACF------------------------------------QTGRIDDAGRLFHVIKEKDNV 289
           AC                                      TG ID A   F  I  K+ V
Sbjct: 344 ACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIV 403

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  M+  Y  NG+  +A+ LF  M  + + P+K S  +V+  C  ++     + +H + 
Sbjct: 404 SWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---EARSIHAEV 460

Query: 350 VVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           V  G+   +  +++ ++ M+ + G  ++A   F+    ++ VSWN+ +   +       A
Sbjct: 461 VGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGA 520

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           +  +  +  E  +PD FT VSV+  C      E G++    +SA   +   +   + ++N
Sbjct: 521 ITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMN 580

Query: 469 LLGR-SSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHGEMAARHLFEL 521
           ++ +  S VD+   L   +P     L+ W+T+++  A  G   HG  A + LF +
Sbjct: 581 MVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHG---HGRKALK-LFRI 631



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 123/451 (27%), Positives = 197/451 (43%), Gaps = 64/451 (14%)

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           D + P + T    L  C    DL +G+Q+H +IV   L  N  + N L  MY+K   +D 
Sbjct: 19  DDYIPIE-TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDD 77

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL---NPDEVTVSNILGA 266
           A   F  + +R + +WN +I+       P    DL+  M+L       P+ +T+  +LGA
Sbjct: 78  ANAAFSALRSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGA 134

Query: 267 CF-----------------------------------------QTGRIDDAGRLFHVIKE 285
                                                      + G ++ A  +F  I+ 
Sbjct: 135 IASGDPSSSSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQV 194

Query: 286 KDNVCWTTMIVGYTQNGKEED-ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            D +CW   I+    N +  D AL+L   M  E + P++ S  +++SSC   +SL   + 
Sbjct: 195 PDLICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARS 254

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +   LG   D++V++AL+ MY +CG  D++  VF  M  RN VSWN+MI  +AQ G 
Sbjct: 255 IHARVEELGFLGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGH 314

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHA---DLFERGQNHFDSISAVHGITPSLD 461
              A A+Y ++ QE  +P+  TFV+ L A   +   DL E    H     A  G+   + 
Sbjct: 315 RSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALH--GWIACAGLEGDVM 372

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE--MAARHLF 519
               ++ + G +  +D+A     ++P K N + W+ +L+     G  +      AA    
Sbjct: 373 VGTALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTAYGDNGRAREAMELFAAMKRQ 431

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            L P N   Y+      A  G  EDV+  RS
Sbjct: 432 SLAP-NKVSYL------AVLGCCEDVSEARS 455



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 124/294 (42%), Gaps = 73/294 (24%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  Y  +G +  AR  FD +P ++I+SWNA+L+A+  +G  ++   LF  M  +    +
Sbjct: 377 LVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPN 436

Query: 121 SVSY---------------------------------NTAIAGFANKGFSREALQVFS-- 145
            VSY                                 N  +  FA  G   EA+  F   
Sbjct: 437 KVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDAT 496

Query: 146 -----------------------------RMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                         MQ + F P  +T VS ++ CA L  L  G+
Sbjct: 497 VVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGR 556

Query: 177 QIHGKIVVG-NLGGNVFVRNALTDMYAK-GGEIDKARWLFDRM--NNRNLVSWNLMISGY 232
            I  ++     +  +V V +A+ +M AK G  +D+   LF RM  + ++LV+WN MI+ Y
Sbjct: 557 SIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAY 616

Query: 233 LKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            ++G  +K + LF+ MQ    + PD  T  ++L  C   G ++D    F + +E
Sbjct: 617 AQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLARE 670


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 376/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D  S NAL+  +A+ G + D  ++F+K+   D VS+N  IAG        +AL++  +M+
Sbjct: 292 DPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P  +T  SAL ACA +     G+Q+H  ++  ++  ++FV   L DMY+K   ++
Sbjct: 352 RSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLE 411

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL---- 264
            AR  F+ +  ++L++WN +ISGY +  +  + + LF EM   G+  ++ T+S IL    
Sbjct: 412 DARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTA 471

Query: 265 ------------GACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTT 293
                       G   ++G                    ++DA R+F      D V +T+
Sbjct: 472 GLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTS 531

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y Q G+ E+AL LF EM   +++PD+F  SS++++CA L++   G+ +H   +  G
Sbjct: 532 MITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYG 591

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+   ++L++MY KCG  DDA   F+ +  R +VSW++MI G AQ+G   +AL L++
Sbjct: 592 FVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFN 651

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L+E + P+  T VSVL AC HA L    + +F+S+  + G  P  +HYACMI+LLGR+
Sbjct: 652 QMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRA 711

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++AV+L+  +P + N+ +W  LL    +  D++ G  AA  LF LEP  +G +++L+
Sbjct: 712 GKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLA 771

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G+WE+VA +R  M+   VKK    SWIE+ +KV+ F+  DR+H  ++ IY +L 
Sbjct: 772 NIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLD 831

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L   + +AG+ P  ++ LHD ++ EK   + +HSEKLA+A+ LI  P G  PIR+ KN+
Sbjct: 832 ELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQG-APIRVKKNL 890

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   K+   I+ R II+RD NRFHHF  G+CSC D W
Sbjct: 891 RVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 163/630 (25%), Positives = 285/630 (45%), Gaps = 116/630 (18%)

Query: 10  AIDTLYSRGQ-AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           AI  L  +G    T  +Y++L+  C     +    ++ +H+  +    + + + N L++ 
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS-IRNHLINL 100

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K     YAR L D+    D++SW+AL                               I
Sbjct: 101 YSKCRNFGYARKLVDESSEPDLVSWSAL-------------------------------I 129

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G+A  G    AL  F  M     +  ++T  S L AC+ + DLR GKQ+HG +VV    
Sbjct: 130 SGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFE 189

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           G+VFV N L  MYAK  E   ++ LFD +  RN+VSWN + S Y++     + + LF EM
Sbjct: 190 GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEM 249

Query: 249 QLLGLNPDEVTVSNILGACF-----------------------------------QTGRI 273
            L G+ P+E ++S+++ AC                                    + G +
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDL 309

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            DA  +F  IK+ D V W  +I G   +   E AL L  +M    + P+ F++SS + +C
Sbjct: 310 ADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKAC 369

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A +     G+ +H   + + ++ DL VS  L+DMY KC + +DA   FN++P +++++WN
Sbjct: 370 AGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWN 429

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------------------- 434
           ++I+GY+Q  +D+EAL+L+ ++ +E +  +  T  ++L +                    
Sbjct: 430 AIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS 489

Query: 435 -LHADLF---------------ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             H+D++               E  +  F+  +        L  +  MI    +    ++
Sbjct: 490 GFHSDIYVVNSLIDSYGKCSHVEDAERIFEECT-----IGDLVSFTSMITAYAQYGQGEE 544

Query: 479 AVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE---LEPINAGPYIML 532
           A+ L   ++ +  KP+  + S+LL+ CA     + G+    H+ +   +  I AG    L
Sbjct: 545 ALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN--SL 602

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            NMYA CG  +D     S +  + +  ++A
Sbjct: 603 VNMYAKCGSIDDAGRAFSELTERGIVSWSA 632



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 44/308 (14%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I    Q  ++     + N +   +  P   S S ++S C    SL  G  +H      G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           + DD  + + LI++Y KC     A  + +     ++VSW+++I+GYAQNG    AL  + 
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 414 KLLQENLKPDSFTFVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           ++    +K + FTF SVL AC +  DL    Q H   +  V G    +     ++ +  +
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH--GVVVVSGFEGDVFVANTLVVMYAK 204

Query: 473 SSDVDKAVDLIKSLPH----------------------------------KPNSLIWSTL 498
             +   +  L   +P                                   KPN    S++
Sbjct: 205 CDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSM 264

Query: 499 LSVCAMKGDIKHGEMAARHLFEL----EPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           ++ C    D   G++   +L +L    +P +A     L +MYA  G   D  S+   +K 
Sbjct: 265 VNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANA---LVDMYAKVGDLADAISVFEKIKQ 321

Query: 555 KNVKKFAA 562
            ++  + A
Sbjct: 322 PDIVSWNA 329


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/685 (36%), Positives = 389/685 (56%), Gaps = 47/685 (6%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P +T+L N     Y+K G L  A+  F      ++ S+N L++A+A+   +   R +FD+
Sbjct: 41  PPSTYLSNHFTLLYSKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDE 100

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           +P  D VSYNT IA +A++G     L++F  +++ R     +T    + AC   + L R 
Sbjct: 101 IPQPDIVSYNTLIAAYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVR- 159

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN---NRNLVSWNLMISGY 232
            Q+H  +VV        V NA+   Y++ G + +AR +F  M     R+ VSWN MI   
Sbjct: 160 -QLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--CFQ--------------------- 269
            ++ +  + + LF+EM   GL  D  T++++L A  C +                     
Sbjct: 219 GQHREGMEAVGLFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNS 278

Query: 270 ---TGRID----------DAGRLFHVIKEKDNVCWTTMIVGYT-QNGKEEDALILFNEML 315
              +G ID          +  ++F  I   D V W TMI G++      ED L  F EM 
Sbjct: 279 HVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQ 338

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVT 374
               RPD  S   V S+C+ L+S   G+ VH  A+   V  + + V++AL+ MY KCG  
Sbjct: 339 RNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNV 398

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            DA  VF+ MP  N VS NSMI GYAQ+G ++E+L L++ +L++++ P+S TF++VLSAC
Sbjct: 399 HDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSAC 458

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
           +H    E GQ +F+ +     I P  +HY+CMI+LLGR+  + +A  +I+++P  P S+ 
Sbjct: 459 VHTGKVEEGQKYFNMMKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIE 518

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W+TLL  C   G+++    AA     LEP NA PY+MLSNMYA+  RWE+ A+++  M+ 
Sbjct: 519 WATLLGACRKHGNVELAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRE 578

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL-- 612
           + VKK    SWIEID KVH FV+ED +HP  + I+  + K++KK+++AG+ P+ +  L  
Sbjct: 579 RGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVK 638

Query: 613 -HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
             + + +E+ + + YHSEKLA+A+ LI    GV PI ++KN+R+CGDCH  +K  S + G
Sbjct: 639 DEEVEPDERERRLLYHSEKLAVAFGLISTEEGV-PILVVKNLRICGDCHNAVKLISALTG 697

Query: 672 RTIILRDSNRFHHFVGGNCSCKDNW 696
           R I +RD++RFH F  G+CSC+D W
Sbjct: 698 REITVRDTHRFHCFKEGHCSCRDYW 722



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 40/228 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ ++   L K++ +    +    N   ++N L+  Y+K G +  AR +FD MP  + +S
Sbjct: 356 CSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVS 415

Query: 93  WNALLSAHARSG-SVQDLRALFDKMPIRD----SVSYNTAIAGFANKGFSREALQVFSRM 147
            N++++ +A+ G  V+ LR LF+ M  +D    S+++   ++   + G   E  + F+ M
Sbjct: 416 LNSMIAGYAQHGVEVESLR-LFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFN-M 473

Query: 148 QKDRF--EPTDYTHVSALNACAQLLDLRRGKQI----------------------HGKIV 183
            K+RF  EP    +   ++   +   L+  ++I                      HG + 
Sbjct: 474 MKERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVE 533

Query: 184 VGNLGGNVFVR----NA-----LTDMYAKGGEIDKARWLFDRMNNRNL 222
           +     N F+R    NA     L++MYA     ++A  +   M  R +
Sbjct: 534 LAVKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGV 581



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +  +++ +C     L  G+++H       +     +S+    +Y KCG   +A T F++ 
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
              NV S+N++IN YA++     A  ++D++ Q    PD  ++ ++++A  +AD  E G
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQ----PDIVSYNTLIAA--YADRGECG 123


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/684 (34%), Positives = 381/684 (55%), Gaps = 40/684 (5%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS----GK 74
           Q   E ++  ++L  ++  D   A R+   M  +  +PN+T   N +  F        G+
Sbjct: 169 QTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDM-KPNSTTYINVISGFSTPEVLPEGR 227

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
             +A  + +     D++   AL++ + + GS  + R +FDKM  RD VS+N  I  +   
Sbjct: 228 KIHAEIVANGFD-SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   EAL+++ ++  + F+ T  T VS L AC+ +  L +G+ +H  I+   L   V V 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            AL +MYAK G +++AR +F+ M NR+ V+W+ +I  Y  NG  K               
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA------------- 393

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                                A ++F  +  +D +CW  MI  Y QNG    A+ +F EM
Sbjct: 394 -------------------RKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM 434

Query: 315 L-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
             +  ++PD  +  +V+ +CA L  L   + +H +     ++ +++V++ LI+MY +CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            ++A  +F     + VVSW +M+  ++Q G+  EAL L+ ++  E +KPD  T+ S+L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C H    E+G  +F  ++ +HG+ P+ DH+A M++LLGRS  +  A +L++S+P +P+ +
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
            W T L+ C + G ++ GE AA  ++EL+P +  PYI +SN+YAA G WE VAS+R  M+
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKME 674

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + +KK    S+IE+D K+H+F S  + HP T+ I EEL++L   ++ AG+ P+TK VLH
Sbjct: 675 ERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  E EK   + YHSEK+A+A+ L+       PIR++KN+RVC DCH   KF + I GR 
Sbjct: 735 DVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRD 794

Query: 674 IILRDSNRFHHFVG-GNCSCKDNW 696
           IILRD NRFH F   G CSC D W
Sbjct: 795 IILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 207/413 (50%), Gaps = 60/413 (14%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P + T ++ L +C+   D+  G+ +H +I       +  V NAL  MY K   +  AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 213 LFDRMN--NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
           +F+ M+   RN+VSWN MI+ Y +NG   + + L+  M L GL  D VT  ++LGAC   
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 268 -----------------FQT------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                            FQ+            G + DA R+F  ++ +D   W  +I+ +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+G    AL +F EM   D++P+  +  +V+S  +    L  G+ +H + V  G D DL
Sbjct: 184 SQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDL 242

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V++ALI+MY KCG + +A  VF+ M  R++VSWN MI  Y QNG   EAL LY KL  E
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDME 302

Query: 419 NLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
             K    TFVS+L AC           +H+ + ERG    DS  AV            ++
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERG---LDSEVAVA---------TALV 350

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           N+  +   +++A  +  ++ ++ +++ WSTL+   A  G  K     AR +F+
Sbjct: 351 NMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDAR-KARKVFD 401



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 40/276 (14%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           D +PD  +  +V+ SC+    +  G+ +H +      + D +V +ALI MY KC    DA
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 378 WTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC- 434
            +VF  M    RNVVSWN+MI  YAQNG   EAL LY ++  + L  D  TFVSVL AC 
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 435 -------LHADLFERGQNHFDSIS----AVHGITPSLDHYACMINLL------------- 470
                  +H  +F  G + F S++     ++    S+     M   L             
Sbjct: 122 SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVIL 181

Query: 471 --GRSSDVDKAVDLIKSLP--HKPNSLIWSTLLSVCAM-----KGDIKHGEMAARHLFEL 521
              +S D   A+ + K +    KPNS  +  ++S  +      +G   H E+ A   F+ 
Sbjct: 182 AHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG-FDS 240

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           + + A   I   NMY  CG   +   +   MK +++
Sbjct: 241 DLVVATALI---NMYGKCGSSHEAREVFDKMKKRDM 273



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 104/249 (41%), Gaps = 24/249 (9%)

Query: 2   KAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-TF 60
           K   K R+  D L SR         T  V +   V  +++ + +     L   +P+  TF
Sbjct: 391 KDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGL---KPDAVTF 447

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRD----IISWNALLSAHARSGSVQDLRALFDKM 116
           +   +L   A  G+L   + L  ++   +    ++  N L++ +AR GS+++   LF   
Sbjct: 448 IA--VLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAA 505

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG- 175
             +  VS+   +A F+  G   EAL +F  M  +  +P D T+ S L  C     L +G 
Sbjct: 506 KEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGW 565

Query: 176 ------KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLM 228
                  ++HG      L        A+ D+  + G +  A+ L + M    + V+W   
Sbjct: 566 RYFTDMAELHG------LAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTF 619

Query: 229 ISGYLKNGQ 237
           ++    +G+
Sbjct: 620 LTACRIHGK 628


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/625 (36%), Positives = 360/625 (57%), Gaps = 44/625 (7%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR + D+MP +D ++W  ++  + R G V   R++F+++  +  V +N  I+G+ + G +
Sbjct: 216 ARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMA 275

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF----- 192
            EA ++F RM  +R    ++T  S L+ACA +     GK +HG+I+   L  N       
Sbjct: 276 VEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQII--RLQPNFVPEAAL 333

Query: 193 -VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V NAL   Y+K G I  AR +FD M  +++VSWN ++SGY+++                
Sbjct: 334 PVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVES---------------- 377

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                         +C     +D A  +F  +  K+ + W  M+ GY   G  EDAL LF
Sbjct: 378 --------------SC-----LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLF 418

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           N+M SE+V+P  ++ +  +++C +L +L HG+ +HG  V LG +      +ALI MY +C
Sbjct: 419 NKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC 478

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   +A  +F +MP  + VSWN+MI+   Q+G   EAL L+D+++ E + PD  +F++VL
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           +AC H+ L + G  +F+S+    GI P  DHY  +I+LLGR+  + +A DLIK++P +P 
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
             IW  +LS C   GD++ G  AA  LF++ P + G YI+LSN Y+A G W D A +R  
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL 658

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
           M+ + VKK    SWIE  NKVH F+  D  HPE   +Y+ L  +  K+++ G+ P+TK+V
Sbjct: 659 MRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVV 718

Query: 612 LHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
           LHD +  +K   +  HSE+LA+ + L+  P G T + ++KN+R+C DCH  + F S  +G
Sbjct: 719 LHDMEPHQKEHILFAHSERLAVGFGLLNLPPGAT-VTVLKNLRICDDCHAAIMFMSKAVG 777

Query: 672 RTIILRDSNRFHHFVGGNCSCKDNW 696
           R I++RD  RFHHF  G CSC + W
Sbjct: 778 REIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 168/319 (52%), Gaps = 11/319 (3%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSH---MDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           E  +T ++  C  V      K +      +  NF       ++N L+ FY+K G +  AR
Sbjct: 294 EFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVAR 353

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +FD M L+D++SWN +LS +  S  +     +F++MP ++ +S+   ++G+ + GF+ +
Sbjct: 354 RIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAED 413

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL++F++M+ +  +P DYT+  A+ AC +L  L+ GKQ+HG IV     G+    NAL  
Sbjct: 414 ALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALIT 473

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYA+ G + +A  +F  M N + VSWN MIS   ++G  ++ ++LF  M   G+ PD ++
Sbjct: 474 MYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRIS 533

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM 314
              +L AC  +G +D+  R F  +K    +      +T +I    + G+  +A  L   M
Sbjct: 534 FLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 315 LSEDVRPDKFSISSVVSSC 333
             E   P      +++S C
Sbjct: 594 PFE---PTPSIWEAILSGC 609



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 217/505 (42%), Gaps = 85/505 (16%)

Query: 53  FYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRAL 112
            + P    L  RL+H Y  S  L  A  LF   P    +S  +L++A+A +  +    + 
Sbjct: 53  LHAPPHPHLTLRLIHLYTLSRDLPAAATLFCADPCP--VSATSLVAAYAAADRLPAAVSF 110

Query: 113 FDKMPI--RDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQL 169
           FD +P   RD+V +N  I+ +A    +  A+ VF S +      P DY+  + L+A   L
Sbjct: 111 FDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHL 170

Query: 170 --LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK---ARWLFDRMNNRNLVS 224
             + +R   Q+H  ++    GG + V NAL  +Y K    +    AR + D M N++ ++
Sbjct: 171 PNISVRHCAQLHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLT 230

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           W  M+ GY++ G                                    +  A  +F  + 
Sbjct: 231 WTTMVVGYVRRGD-----------------------------------VGAARSVFEEVD 255

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            K +V W  MI GY  +G   +A  LF  M+ E V  D+F+ +SV+S+CA +    HG+ 
Sbjct: 256 GKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKS 315

Query: 345 VHGKAVVLG----VDDDLLVSSALIDMYCKCG---------------------------- 372
           VHG+ + L      +  L V++AL+  Y KCG                            
Sbjct: 316 VHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYV 375

Query: 373 ---VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
                D A  VF  MP +N +SW  M++GY   G   +AL L++K+  EN+KP  +T+  
Sbjct: 376 ESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAG 435

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
            ++AC      + G+     I  + G   S      +I +  R   V +A  +   +P+ 
Sbjct: 436 AIAACGELGALKHGKQLHGHIVQL-GFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNI 494

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMA 514
            +S+ W+ ++S     G   HG  A
Sbjct: 495 -DSVSWNAMISALGQHG---HGREA 515


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/637 (36%), Positives = 375/637 (58%), Gaps = 35/637 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + + G+V+  R LFDK  ++  V++N+ I+G+A  G   EAL +F  M+ +   
Sbjct: 233 NSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVR 292

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            ++ +  S +  CA L +LR  +Q+H  +V      +  +R AL   Y+K   +  A  L
Sbjct: 293 LSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRL 352

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           F  +    N+VSW  MISG+L+N   ++ +DLF EM+  G+ P+E T S IL A      
Sbjct: 353 FKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISP 412

Query: 268 --------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      + G++++A ++F  I +KD V W+ M+ GY Q 
Sbjct: 413 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQT 472

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL-ASLYHGQVVHGKAVVLGVDDDLLV 360
           G+ E A+ +F E+    ++P++F+ SS+++ CA   AS+  G+  HG A+   +D  L V
Sbjct: 473 GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCV 532

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+ MY K G  + A  VF     +++VSWNSMI+GYAQ+GQ ++AL ++ ++ +  +
Sbjct: 533 SSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 592

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           K D  TF+ V +AC HA L E G+ +FD +     I P+ +H +CM++L  R+  ++KA+
Sbjct: 593 KMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 652

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            +I+++P+   S IW T+L+ C +    + G +AA  +  ++P ++  Y++LSNMYA  G
Sbjct: 653 KVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            W++ A +R  M  +NVKK   YSWIE+ NK + F++ DR+HP  + IY +L  L  +L+
Sbjct: 713 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLK 772

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  VL D  +E K   +  HSE+LA+A+ LI  P G +P+ I+KN+RVCGDCH
Sbjct: 773 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG-SPLLIIKNLRVCGDCH 831

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVG-GNCSCKDNW 696
           L +K  + I  R I++RDSNRFHHF   G CSC D W
Sbjct: 832 LVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/548 (26%), Positives = 265/548 (48%), Gaps = 52/548 (9%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L+ +      E+Y  L+   +R    + AKRL  ++     E + + + + +L   A   
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCS-IFSSVLKVSATLC 107

Query: 74  KLFYARDLFDKMP----LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
              + R L  +      L D+    +L+  + +  + +D R +FD+M  R+ V++ T I+
Sbjct: 108 DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLIS 167

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+A    + E L +F RMQ +  +P  +T  +AL   A+     RG Q+H  +V   L  
Sbjct: 168 GYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDK 227

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
            + V N+L ++Y K G + KAR LFD+   +++V+WN MISGY  NG   + + +F  M+
Sbjct: 228 TIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMR 287

Query: 250 LLGLNPDEVTVSNILGACFQTGRID----------------------------------- 274
           L  +   E + ++++  C     +                                    
Sbjct: 288 LNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAML 347

Query: 275 DAGRLFHVIKEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           DA RLF  I    NV  WT MI G+ QN  +E+A+ LF+EM  + VRP++F+ S ++++ 
Sbjct: 348 DALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTAL 407

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             ++       VH + V    +    V +AL+D Y K G  ++A  VF+ +  +++V+W+
Sbjct: 408 PVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +M+ GYAQ G+   A+ ++ +L +  +KP+ FTF S+L+ C   +        F   +  
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE- 512
             +  SL   + ++ +  +  +++ A ++ K    K + + W++++S     G  +HG+ 
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK-DLVSWNSMIS-----GYAQHGQA 577

Query: 513 MAARHLFE 520
           M A  +F+
Sbjct: 578 MKALDVFK 585



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 205/497 (41%), Gaps = 96/497 (19%)

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           S +L+ A +LFDK P RD  S+ +LL   +R G  Q                        
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQ------------------------ 75

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                  EA ++F  + +   E       S L   A L D   G+Q+H + +      +V
Sbjct: 76  -------EAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDV 128

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V  +L D Y KG      R +FD M  RN+V+W  +ISGY +N    + + LF  MQ  
Sbjct: 129 SVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNE 188

Query: 252 GLNPDEVTVSNILGAC-----------------------------------FQTGRIDDA 276
           G  P+  T +  LG                                      + G +  A
Sbjct: 189 GTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKA 248

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             LF   + K  V W +MI GY  NG + +AL +F  M    VR  + S +SV+  CA L
Sbjct: 249 RILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANL 308

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSM 395
             L   + +H   V  G   D  + +AL+  Y KC    DA  +F  +    NVVSW +M
Sbjct: 309 KELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAM 368

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-------LHADL----FERGQ 444
           I+G+ QN    EA+ L+ ++ ++ ++P+ FT+  +L+A        +HA +    +ER  
Sbjct: 369 ISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSS 428

Query: 445 N----------HFDSISAVHGITPSLDH-----YACMINLLGRSSDVDKAVDLIKSLPH- 488
                          +     +   +D      ++ M+    ++ + + A+ +   L   
Sbjct: 429 TVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKG 488

Query: 489 --KPNSLIWSTLLSVCA 503
             KPN   +S++L+VCA
Sbjct: 489 GIKPNEFTFSSILNVCA 505



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 187/419 (44%), Gaps = 72/419 (17%)

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA------ 266
           LFD+   R+  S+  ++ G+ ++G+ ++   LF  +  LG+  D    S++L        
Sbjct: 49  LFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCD 108

Query: 267 ----------CFQTGRIDDAG-------------------RLFHVIKEKDNVCWTTMIVG 297
                     C + G +DD                     ++F  +KE++ V WTT+I G
Sbjct: 109 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISG 168

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y +N   ++ L LF  M +E  +P+ F+ ++ +   A+      G  VH   V  G+D  
Sbjct: 169 YARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 228

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + VS++LI++Y KCG    A  +F+    ++VV+WNSMI+GYA NG DLEAL ++  +  
Sbjct: 229 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 288

Query: 418 ENLKPDSFTFVSVLSAC-----------LHADLFERG----QNHFDSISAVH-------- 454
             ++    +F SV+  C           LH  + + G    QN   ++   +        
Sbjct: 289 NYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLD 348

Query: 455 --------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCA 503
                   G   ++  +  MI+   ++   ++AVDL   +  K   PN   +S +L+   
Sbjct: 349 ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP 408

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           +   I   E+ A+ +      ++     L + Y   G+ E+ A + S +  K++  ++A
Sbjct: 409 V---ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSA 464



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 127/251 (50%), Gaps = 7/251 (2%)

Query: 260 VSNILGACFQT---GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           V+ +   CF T    R+ +A  LF     +D   + +++ G++++G+ ++A  LF  +  
Sbjct: 27  VAQVRIYCFGTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHR 86

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             +  D    SSV+   A L     G+ +H + +  G  DD+ V ++L+D Y K     D
Sbjct: 87  LGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD 146

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
              VF+ M  RNVV+W ++I+GYA+N  + E L L+ ++  E  +P+SFTF + L     
Sbjct: 147 GRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAE 206

Query: 437 ADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
             +  RG Q H  ++   +G+  ++     +INL  +  +V KA  L      K + + W
Sbjct: 207 EGVGGRGLQVH--TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTW 263

Query: 496 STLLSVCAMKG 506
           ++++S  A  G
Sbjct: 264 NSMISGYAANG 274



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 36/194 (18%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           LL  YAK G +  A ++F +   +D++SWN+++S +A+ G       +F +M  R    D
Sbjct: 536 LLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMD 595

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTD---------YTHVSALNACAQLL 170
            V++    A   + G   E  + F  M +D +  PT          Y+    L    +++
Sbjct: 596 GVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVI 655

Query: 171 D-------------LRRGKQIHGKIVVGNLGGNVFVRNA---------LTDMYAKGGEID 208
           +             +    ++H K  +G L     +            L++MYA+ G+  
Sbjct: 656 ENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQ 715

Query: 209 KARWLFDRMNNRNL 222
           +   +   MN RN+
Sbjct: 716 ERAKVRKLMNERNV 729


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/645 (36%), Positives = 369/645 (57%), Gaps = 42/645 (6%)

Query: 92  SWN-----ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           SWN      +++ +A+   + D   +FD+MP RD V +NT I+G+A  GF++ AL +  R
Sbjct: 62  SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLR 121

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M ++   P   T VS L A A    LR G  +HG ++       V V  AL DMY+K G 
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  AR +FD M++R +VSWN MI GY+++G  +  + +FQ+M   G+ P  VTV   L A
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 267 CFQTG-----------------------------------RIDDAGRLFHVIKEKDNVCW 291
           C   G                                   R+D A  +F  ++ K  V W
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI+GY QNG   +AL  F EM S +++PD F++ SV+ + A+L+     + +HG  + 
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +D ++ V +AL+DMY KCG    A  +F+MM  R+V++WN+MI+GY  +G    ++ L
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++ +  +KP+  TF+  LSAC H+ L E G   F+S+   +GI P++DHY  M++LLG
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLG 481

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +++A D I+ +P KP   ++  +L  C +  ++  GE AA  +F+L P + G +++
Sbjct: 482 RAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVL 541

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N+YA    W  VA +R+ M+   ++K    S +EI N+VH F S   +HP+++ IY  
Sbjct: 542 LANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSY 601

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L+ +++ AG+ P+T  + HD +++ KV+ +  HSEKLA+A+ L+    G TPI I K
Sbjct: 602 LETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTG-TPIHIRK 659

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   K+ S + GR II+RD +RFH F  G CSC D W
Sbjct: 660 NLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 208/457 (45%), Gaps = 78/457 (17%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           + G+A       AL  FSRM+ D   P  Y     L  C    DL+RGK+IHG ++    
Sbjct: 2   LKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGF 61

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             N+F    + +MYAK  +I+ A  +FDRM  R+LV WN MISGY +NG  K  + L   
Sbjct: 62  SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLR 121

Query: 248 MQLLGLNPDEVTVSNILGACFQT-----------------------------------GR 272
           M   G  PD +T+ +IL A   T                                   G 
Sbjct: 122 MSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGS 181

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +  A  +F  +  +  V W +MI GY Q+G  E A+++F +ML E V+P   ++   + +
Sbjct: 182 VSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHA 241

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA L  L  G+ VH     L +D D+ V ++LI MY KC   D A  +F  +  + +VSW
Sbjct: 242 CADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSW 301

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFE 441
           N+MI GYAQNG   EAL  + ++   N+KPDSFT VSV+ A            +H  +  
Sbjct: 302 NAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIR 361

Query: 442 R-------------------GQNH-----FDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           R                   G  H     FD ++A H IT     +  MI+  G      
Sbjct: 362 RFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVIT-----WNAMIDGYGTHGLGK 416

Query: 478 KAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
            +V+L K +     KPN + +   LS C+  G ++ G
Sbjct: 417 TSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEG 453



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 147/304 (48%), Gaps = 36/304 (11%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+ GY ++   + AL  F+ M  + VRP  ++ + ++  C   + L  G+ +HG  +  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              +L   + +++MY KC   +DA+ +F+ MP R++V WN+MI+GYAQNG    AL L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQ-------------------------NHFD 448
           ++ +E  +PDS T VS+L A     L   G                          +   
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 449 SISAVHGITPSLDH-----YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLS 500
           S+S    I   +DH     +  MI+   +S D + A+ + + +     +P ++     L 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVK 558
            CA  GD++ G+   + + +L+ +++   +M  L +MY+ C R +  A I  ++++K + 
Sbjct: 241 ACADLGDLERGKFVHKLVDQLK-LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 559 KFAA 562
            + A
Sbjct: 300 SWNA 303


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/636 (37%), Positives = 367/636 (57%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+  + +S  V D  A+FD M +RDSV++N  I G+A  GF  E  Q+F RM+    +
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            +     +AL  C+Q  +L   KQ+H  +V         +R AL   Y+K   +D+A  L
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG------- 265
           F   +   N+V+W  MI G+++N   +K +DLF +M   G+ P+  T S +L        
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 266 ------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                   A  +TG + ++ R+F+ I  KD V W+ M+ G  Q 
Sbjct: 424 SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQT 483

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDDDLLV 360
              E A+ +F +++ E V+P++++ SSV+++C+   A++ HG+ +H  AV  G  + L V
Sbjct: 484 RDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCV 543

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+ MY K G  + A  VF     R++VSWNSMI GY Q+G   +AL ++  +  + L
Sbjct: 544 SSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
             D  TF+ VL+AC HA L E G+ +F+ +   + I   ++HY+CM++L  R+   DKA+
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAM 663

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           D+I  +P   +  IW TLL+ C +  +++ G++AA  L  L+P +A  Y++LSN++A  G
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            WE+ A +R  M  + VKK A  SWIEI N++  F++ D +HP ++++Y +L +L  KL+
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLK 783

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  V HD +EE K   +  HSE+LA+AY LI  P G  PI+I KN+R+CGDCH
Sbjct: 784 DMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPG-APIQIEKNLRICGDCH 842

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             ++  S I  RT+I+RDSNRFHHF GG CSC   W
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 238/538 (44%), Gaps = 102/538 (18%)

Query: 44  RLQS--HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA 101
           RLQS  H   +F  P+  FL+++ L F +   +  YA  LFD+ PL+DI  +N       
Sbjct: 22  RLQSSIHHIKHFLHPHG-FLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYN------- 73

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
                   R LFD                F+     REAL +F  +          T   
Sbjct: 74  --------RLLFD----------------FSRNNHDREALHLFKDLHSSGLGVDGLTLSC 109

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           AL  C  L D   G+Q+H + +      +V V  +L DMY K  + +  R +FD M  +N
Sbjct: 110 ALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN 169

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------- 267
           +VSW  ++SGY +NG   + I L  +MQ+ G+NP+  T + +LGA               
Sbjct: 170 VVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229

Query: 268 ---------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                 ++  + DA  +F  +  +D+V W  MI GY   G   +
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
              +F+ M    V+  +    + +  C++   L   + +H   V  G +    + +AL+ 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 367 MYCKCGVTDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            Y KC   D+A+ +F+M     NVV+W +MI G+ QN  + +A+ L+ ++ +E ++P+ F
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHF 409

Query: 426 TFVSVLS-------ACLHA------------------DLFERGQNHFDSISAVHGITPSL 460
           T+ +VL+       + LHA                  D + +  N  +S    + I P+ 
Sbjct: 410 TYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI-PAK 468

Query: 461 D--HYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMK-GDIKHGE 512
           D   ++ M+  L ++ D +KA+++   L     KPN   +S++++ C+     ++HG+
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGK 526



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 34/214 (15%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           K  +    L   G    E  ++ ++  C+     VE  K++ +   +   + N   + + 
Sbjct: 488 KAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHA-TAVKSGKSNALCVSSA 546

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y+K G +  A  +F +   RDI+SWN++                            
Sbjct: 547 LLTMYSKKGNIESAEKVFTRQEERDIVSWNSM---------------------------- 578

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I G+   G +++AL+VF  MQ       D T +  L AC     +  G++    ++ 
Sbjct: 579 ---ITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK 635

Query: 185 G-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
             ++   +   + + D+Y++ G  DKA  + + M
Sbjct: 636 DYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGM 669


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/636 (37%), Positives = 366/636 (57%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+  + +S  V D  A+FD M +RDSV++N  I G+A  GF  E  Q+F RM+    +
Sbjct: 244 NALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVK 303

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            +     +AL  C+Q  +L   KQ+H  +V         +R AL   Y+K   +D+A  L
Sbjct: 304 LSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKL 363

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG------- 265
           F   +   N+V+W  MI G+++N   KK +DLF +M   G+ P+  T S +L        
Sbjct: 364 FSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLL 423

Query: 266 ------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                   A  +TG + ++ R+F+ I  KD V W+ M+ G  Q 
Sbjct: 424 SQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQT 483

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDDDLLV 360
              E A+ +F +++ E V+P++++ SSV+++C+   A++ HG+ +H  AV  G  + L V
Sbjct: 484 RDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCV 543

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+ MY K G  + A  VF     R++VSWNSMI GY Q+G   +AL ++  +  + L
Sbjct: 544 SSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGL 603

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
             D  TF+ VL+AC HA L E G+ +F+ +   + I    +HY+CM++L  R+   DKA+
Sbjct: 604 PLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAM 663

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           D+I  +P   +  IW TLL+ C +  +++ G++AA  L  L+P +A  Y++LSN++A  G
Sbjct: 664 DIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAG 723

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            WE+ A +R  M  + VKK A  SWIEI N++  F++ D +HP ++++Y +L +L  KL+
Sbjct: 724 NWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLK 783

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  V HD +EE K   +  HSE+LA+AY LI  P G  PI+I KN+R+CGDCH
Sbjct: 784 DMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPG-APIQIEKNLRICGDCH 842

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             ++  S I  RT+I+RDSNRFHHF GG CSC   W
Sbjct: 843 NVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/538 (25%), Positives = 238/538 (44%), Gaps = 102/538 (18%)

Query: 44  RLQS--HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA 101
           RLQS  H   +F  P+  FL+++ L F +   +  YA  LFD+ PL+DI  +N       
Sbjct: 22  RLQSSIHHIKHFLHPHG-FLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYN------- 73

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
                   R LFD                F+     REAL +F  +          T   
Sbjct: 74  --------RLLFD----------------FSRNNHDREALHLFKDLHSSGLGVDGLTLSC 109

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           AL  C  L D   G+Q+H + +      +V V  +L DMY K  + +  R +FD M  +N
Sbjct: 110 ALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN 169

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------- 267
           +VSW  ++SGY +NG   + I L  +MQ+ G+NP+  T + +LGA               
Sbjct: 170 VVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229

Query: 268 ---------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                 ++  + DA  +F  +  +D+V W  MI GY   G   +
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
              +F+ M    V+  +    + +  C++   L   + +H   V  G +    + +AL+ 
Sbjct: 290 GFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMV 349

Query: 367 MYCKCGVTDDAWTVFNMM-PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            Y KC   D+A+ +F+M     NVV+W +MI G+ QN  + +A+ L+ ++ +E ++P+ F
Sbjct: 350 TYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHF 409

Query: 426 TFVSVLS-------ACLHA------------------DLFERGQNHFDSISAVHGITPSL 460
           T+ +VL+       + LHA                  D + +  N  +S    + I P+ 
Sbjct: 410 TYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSI-PAK 468

Query: 461 D--HYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMK-GDIKHGE 512
           D   ++ M+  L ++ D +KA+++   L     KPN   +S++++ C+     ++HG+
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGK 526



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 170/397 (42%), Gaps = 50/397 (12%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A  LFD    +++  +N ++  + +N   ++ + LF+++   GL  D +T+S  L  C  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 268 --------------FQTGRIDDA------------------GR-LFHVIKEKDNVCWTTM 294
                          ++G ++D                   GR +F  +  K+ V WT++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           + GY +NG  ++ + L N+M  E V P+ F+ ++V+ + A  + +  G  VH   V  G 
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           +    V +ALI MY K  +  DA  VF+ M  R+ V+WN MI GYA  G  LE   ++ +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 415 LLQENLKPDSFTFVSVLSACLHA-DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +    +K     F + L  C    +L    Q H   +   +G   + D    ++    + 
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVK--NGYEFAQDIRTALMVTYSKC 354

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG---------EMAARHLFELEPI 524
           S VD+A  L        N + W+ ++       + K           E    + F    +
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 525 NAG-PYIMLSNMYAAC--GRWEDVASIRSSMKSKNVK 558
            AG P  +LS ++A      +E V S+ +++    VK
Sbjct: 415 LAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVK 451



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 34/214 (15%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           K  +    L   G    E  ++ ++  C+     VE  K++ +   +   + N   + + 
Sbjct: 488 KAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHA-TAVKSGKSNALCVSSA 546

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y+K G +  A  +F +   RDI+SWN++                            
Sbjct: 547 LLTMYSKKGNIESAEKVFTRQEERDIVSWNSM---------------------------- 578

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I G+   G +++AL+VF  MQ       D T +  L AC     +  G++    ++ 
Sbjct: 579 ---ITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIK 635

Query: 185 G-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
             ++       + + D+Y++ G  DKA  + + M
Sbjct: 636 DYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGM 669


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/645 (37%), Positives = 373/645 (57%), Gaps = 75/645 (11%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           DS  +  AI     +   REA+Q+  R++K    P    +++ L  C +   L+ GKQ+H
Sbjct: 87  DSKLFKEAIDILCGQSRLREAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQVH 142

Query: 180 GKI-VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG-- 236
             I   G++G  +++ N L DMYAK G +  A  +FD M +R+L SWN+MISGY+K G  
Sbjct: 143 AHIKTSGSIG--LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNF 200

Query: 237 -----------------------------QPKKCIDLFQEMQ------------------ 249
                                        +P++ ++L++ MQ                  
Sbjct: 201 EKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAA 260

Query: 250 ------------------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
                              +GL+ DEV   ++L    + G I++A  +F  ++E+D V W
Sbjct: 261 SAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSW 320

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           TTMI  Y +NG+ E+   LF  +++ ++ P+ F+ + V+++CA LA+   G+ +H   V 
Sbjct: 321 TTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVR 380

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           +G D     +SAL+ MY KCG  ++A +VF ++P  ++ SW S++ GYAQ+GQ  +AL  
Sbjct: 381 VGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHF 440

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++ LL+   KPD   F+ VLSAC HA L ++G  +F SI   HG+T ++DHYAC+I+LL 
Sbjct: 441 FELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLA 500

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+    +A  +I  +P KP+  IW+ LL  C + G+++  + AA+ LFE+EP N   Y+ 
Sbjct: 501 RAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVT 560

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N+YA+ G   + A+IR +M S+ + K    SWIEI  +VH F   D +HP+++ I E 
Sbjct: 561 LANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEY 620

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           LS+L K+++E G+ P+T  VLHD + E+K +++ YHSEKLA+A+ +I  P G TPI++ K
Sbjct: 621 LSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSG-TPIKVFK 679

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R C DCH  +KF S+I GR II+RDSNRFH F GG+CSCKD W
Sbjct: 680 NLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 132/466 (28%), Positives = 231/466 (49%), Gaps = 42/466 (9%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
            + +LR+A+  LY R +      Y  L+  C +   ++  K++ +H+  +       ++ 
Sbjct: 100 GQSRLREAVQLLY-RIEKPYASIYLTLLKFCLKQRALKEGKQVHAHIKTS--GSIGLYIS 156

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           NRLL  YAK G L  A  +FD+M  RD+ SWN ++S + + G+ +  R LFDKMP RD+ 
Sbjct: 157 NRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNF 216

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL-DLRRGKQIHGK 181
           S+   I+G        EAL+++  MQK  +  ++   +S+  A +  +  L  GK+IHG 
Sbjct: 217 SWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGH 276

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           I+   L  +  V  +L DMY K G I++AR++FD+M  R++VSW  MI  YLKNG+ ++ 
Sbjct: 277 IMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEG 336

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
             LF+ +    + P++ T + +L AC                                  
Sbjct: 337 FALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHM 396

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G I++A  +F ++ + D   WT+++VGY Q+G+ + AL  F  +L    +PD  + 
Sbjct: 397 YSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAF 456

Query: 327 SSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
             V+S+CA    +  G +  H      G+   +   + +ID+  + G   +A ++ N MP
Sbjct: 457 IGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMP 516

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            + +   W +++ G   +G +LE      K L E    +  T+V++
Sbjct: 517 IKPDKYIWAALLGGCRIHG-NLELAKRAAKSLFEIEPENPATYVTL 561



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 183/398 (45%), Gaps = 38/398 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W +LL  + + GS+++ R +FDKM  RD VS+ T I  +   G   E   +F  + 
Sbjct: 285 DEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLM 344

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P D+T    LNACA L     GKQIH  +V           +AL  MY+K G+I+
Sbjct: 345 NSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIE 404

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +F+ +   +L SW  ++ GY ++GQ  K +  F+ +   G  PD +    +L AC 
Sbjct: 405 NAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACA 464

Query: 269 QTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +D     FH IKEK  +      +  +I    + G+  +A  + NEM    ++PDK
Sbjct: 465 HAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEM---PIKPDK 521

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +  ++++  C    +L   +    K++     ++      L ++Y   G+  +   +   
Sbjct: 522 YIWAALLGGCRIHGNLELAKRA-AKSLFEIEPENPATYVTLANIYASAGMRAEEANIRET 580

Query: 384 MPTRNVV-----SWNSMI----------NGYAQNGQDLEALALYDKLLQE-NLKPDSFTF 427
           M +R +V     SW  +           N + ++ + LE L+   K ++E    PD+  F
Sbjct: 581 MDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPDT-NF 639

Query: 428 VSVLSACLH-ADLFERGQN---HFDSISAVHGI--TPS 459
           V      LH  +L ++ +N   H + ++   GI  TPS
Sbjct: 640 V------LHDVELEQKEENLSYHSEKLAVAFGIISTPS 671


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/644 (38%), Positives = 356/644 (55%), Gaps = 49/644 (7%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P +      LL  Y + G L  A  LF +MP R+ +++  LL     +G V + R LFD+
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDE 168

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP +D V+    ++G+   G   EA  +F  M K                          
Sbjct: 169 MPDKDVVARTAMLSGYCQAGRITEARALFDEMPKR------------------------- 203

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                         NV    A+   YA+ G++  AR LF+ M +RN VSW  M+ GY++ 
Sbjct: 204 --------------NVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGYIQA 249

Query: 236 GQPKKCIDLFQEMQLLGLNPDE-VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTT 293
           G  +   DLF  M      PD  V   N +   F Q G +D A  +F  +  +D+  W+ 
Sbjct: 250 GHVEDAEDLFNAM------PDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSA 303

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y QN    +AL  F EML   +RP+  S  S+++ CA LA+  +G+ +H   +   
Sbjct: 304 MIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCS 363

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D D+   SALI MY KCG  D A  VFNM   ++VV WNSMI GYAQ+G   EAL ++D
Sbjct: 364 FDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFD 423

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            L    + PD  T++ VL+AC +    + G+  F+S+     I     HY+CM++LLGR+
Sbjct: 424 DLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRA 483

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             VD+A+DLI ++P +P+++IW  L+  C M  + +  E+AA+ L ELEP +AGPY++LS
Sbjct: 484 GLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLS 543

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEEL 592
           ++Y + GRWED + +R  + S+N+ K    SWIE +  VH F S D  +HPE  II   L
Sbjct: 544 HIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNML 603

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   L E+G+S +   VLHD  EE+K +S+ YHSE+ A+AY L+K P G+ PIR+MKN
Sbjct: 604 EELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGM-PIRVMKN 662

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVCGDCH  +K  + I  R IILRD+NRFHHF  G CSC+D W
Sbjct: 663 LRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 172/348 (49%), Gaps = 24/348 (6%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +++ NA ++   R+G+++  RA FD MP+R + SYN  IAG+        AL +F RM  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN--LGGNVFVRNALTDMYAKGGEI 207
                     + + NA    L LRR         + +  L  +V    +L   Y + G +
Sbjct: 77  --------RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLL 128

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  LF +M  RN V++ +++ G+L  G+  +   LF EM     + D V  + +L   
Sbjct: 129 ADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMP----DKDVVARTAMLSGY 184

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            Q GRI +A  LF  + +++ V WT MI GY QNGK   A  LF      +V PD+  +S
Sbjct: 185 CQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLF------EVMPDRNEVS 238

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPT 386
               +   +  +  G V   + +   + D  + + +A++  + + G+ D A  +F  M  
Sbjct: 239 ---WTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCA 295

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           R+  +W++MI  Y QN   +EAL+ + ++L   ++P+  +F+S+L+ C
Sbjct: 296 RDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVC 343


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/670 (37%), Positives = 375/670 (55%), Gaps = 68/670 (10%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
            F +   TFL N LL  YAKSG+L  AR +FD+MP  ++ + NALLSA A S  V D+  
Sbjct: 41  TFLQAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMER 100

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQLL 170
           LF  MP RD+VSYN  I GF++ G    ++Q++ + ++++   PT  T  + +   + L 
Sbjct: 101 LFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALS 160

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN------------ 218
           D   G  +H +++    G   FV + L DMYAK G I  AR +F  M             
Sbjct: 161 DRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLIT 220

Query: 219 -------------------NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                              +R+ ++W  M++G  +NG   + +D+F+ M+  G+  D+ T
Sbjct: 221 GLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYT 280

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKE---KDNV--------------------------- 289
             +IL AC     +++  ++   I     +DNV                           
Sbjct: 281 FGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT 340

Query: 290 -----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
                 WT MIVGY QN   E+A+  F+EM  + ++PD F++ SV+SSCA LASL  G  
Sbjct: 341 CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ 400

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
            H  A+V G+   + VS+AL+ +Y KCG  +DA  +F+ M   + VSW +++ GYAQ G+
Sbjct: 401 FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGK 460

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             E + L++K+L   LKPD  TF+ VLSAC  A L E+G ++FDS+   HGI P  DHY 
Sbjct: 461 AKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYT 520

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           CMI+L  RS    +A + IK +PH P++  W+TLLS C ++G+++ G+ AA +L E +P 
Sbjct: 521 CMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQ 580

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           N   Y++L +M+AA G+W +VA +R  M+ + VKK    SWI+  NKVH F ++D++HP 
Sbjct: 581 NPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPF 640

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +  IYE+L  L  K+ E G+ P+   VLHD  + +KV  I +HSEKLA+A+ LI  P  +
Sbjct: 641 SSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEM 700

Query: 645 TPIRIMKNIR 654
            PIRI+KN+R
Sbjct: 701 -PIRIVKNLR 709



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 157/325 (48%), Gaps = 40/325 (12%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + + G    +  +  ++  C  +  +E  K++ +++   +YE N  F+ + L+  Y+K  
Sbjct: 269 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNV-FVGSALVDMYSKCR 327

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  A  +F +M  R+IISW A+                               I G+  
Sbjct: 328 SIRLAEAVFRRMTCRNIISWTAM-------------------------------IVGYGQ 356

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
              S EA++ FS MQ D  +P D+T  S +++CA L  L  G Q H   +V  L   + V
Sbjct: 357 NACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL  +Y K G I+ A  LFD M+  + VSW  +++GY + G+ K+ IDLF++M   GL
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGL 476

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDAL 308
            PD VT   +L AC + G ++     F  +++   +      +T MI  Y+++G+ ++A 
Sbjct: 477 KPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAE 536

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSC 333
               +M      PD F  ++++SSC
Sbjct: 537 EFIKQMPHS---PDAFGWATLLSSC 558


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 255/759 (33%), Positives = 402/759 (52%), Gaps = 89/759 (11%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G +  + +   + + C R+   ++A+R    ++         F+ N ++  Y   G+   
Sbjct: 223 GNSCVKGSILDMFIKCGRM---DIARRFFEEIEFK-----DVFMWNIMVSGYTSKGEFKK 274

Query: 78  ARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRALFDKMP-IRD----SVSYNTAI 128
           A      M L     D ++WNA++S +A+SG  ++    F +M  ++D     VS+   I
Sbjct: 275 ALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALI 334

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNL 187
           AG    G+  EAL VF +M  +  +P   T  SA++AC  L  LR G++IHG  + V  L
Sbjct: 335 AGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEEL 394

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL--- 244
             ++ V N+L D YAK   ++ AR  F  +   +LVSWN M++GY   G  ++ I+L   
Sbjct: 395 DSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSE 454

Query: 245 --------------------------------FQEMQLLGLNPDEVTVSNILGACFQ--- 269
                                           FQ M  +G++P+  T+S  L AC Q   
Sbjct: 455 MKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRN 514

Query: 270 -------------------TG-------------RIDDAGRLFHVIKEKDNVCWTTMIVG 297
                              TG              ++ A  +F  +  +D V W ++I  
Sbjct: 515 LKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISA 574

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             Q+G+  +AL L  EM   +V  +  ++ S + +C+KLA+L  G+ +H   +  G+D  
Sbjct: 575 CAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTC 634

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             + ++LIDMY +CG    +  +F++MP R++VSWN MI+ Y  +G  ++A+ L+ +   
Sbjct: 635 NFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRT 694

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             LKP+  TF ++LSAC H+ L E G  +F  +   + + P+++ YACM++LL R+   +
Sbjct: 695 MGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFN 754

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           + ++ I+ +P +PN+ +W +LL  C +  +    E AAR+LFELEP ++G Y++++N+Y+
Sbjct: 755 ETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYS 814

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A GRWED A IR  MK + V K    SWIE+  K+H FV  D +HP  E I  ++  L  
Sbjct: 815 AAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYF 874

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            ++E G+ P+T  VL D  E+EK  S+C HSEK+ALA+ LI    G TP+RI+KN+RVCG
Sbjct: 875 DIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAG-TPLRIIKNLRVCG 933

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S +  R II+RD+ RFHHFV G CSC D W
Sbjct: 934 DCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 143/548 (26%), Positives = 259/548 (47%), Gaps = 86/548 (15%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E Y  ++  C ++ ++ L  ++ + + +N  +    FL +RLL  Y ++G +  AR +FD
Sbjct: 90  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDV-CEFLGSRLLEVYCQTGCVEDARRMFD 148

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           KM  R++ SW A++  +   G  +                               E +++
Sbjct: 149 KMSERNVFSWTAIMEMYCGLGDYE-------------------------------ETIKL 177

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M  +   P  +       AC++L + R GK ++  ++     GN  V+ ++ DM+ K
Sbjct: 178 FYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIK 237

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D AR  F+ +  +++  WN+M+SGY   G+ KK +    +M+L G+ PD+VT + I
Sbjct: 238 CGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAI 297

Query: 264 LGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           +    Q+G+ ++A + F  +      + + V WT +I G  QNG + +AL +F +M+ E 
Sbjct: 298 ISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEG 357

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDA 377
           V+P+  +I+S VS+C  L+ L HG+ +HG  + V  +D DLLV ++L+D Y KC   + A
Sbjct: 358 VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVA 417

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F M+   ++VSWN+M+ GYA  G   EA+ L  ++  + ++PD  T+          
Sbjct: 418 RRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW---------- 467

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK---SLPHKPNSLI 494
                           +G+      Y           D   A++  +   S+   PN+  
Sbjct: 468 ----------------NGLVTGFTQYG----------DGKAALEFFQRMHSMGMDPNTTT 501

Query: 495 WSTLLSVCAMKGDIK-----HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
            S  L+ C    ++K     HG +   H+     ++ G    L +MY+ C   E   S+ 
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHI----ELSTGVGSALISMYSGCDSLEVACSVF 557

Query: 550 SSMKSKNV 557
           S + +++V
Sbjct: 558 SELSTRDV 565



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 170/394 (43%), Gaps = 69/394 (17%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           PL+ + + N  + A   + S Q+LR L +    R  ++  +        G    A  + S
Sbjct: 23  PLQTLPTRNCCIVASTNTKS-QNLRKLTNA---RQRITGFSGGGSVHRNGVLNNAAMLLS 78

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M     +     + S L  C +L +LR G Q+H ++VV  +    F+ + L ++Y + G
Sbjct: 79  SMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTG 138

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            ++ AR +FD+M+ RN+ SW  ++  Y   G  ++ I LF  M   G+ PD      +  
Sbjct: 139 CVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFK 198

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    + GR+D A R F  I+ KD   
Sbjct: 199 ACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFM 258

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  M+ GYT  G+ + AL   ++M    V+PD+ + ++++S  A+      GQ       
Sbjct: 259 WNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQ-----SGQFEEASKY 313

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            L +                 G+ D         P  NVVSW ++I G  QNG D EAL+
Sbjct: 314 FLEMG----------------GLKD-------FKP--NVVSWTALIAGSEQNGYDFEALS 348

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           ++ K++ E +KP+S T  S +SAC +  L   G+
Sbjct: 349 VFRKMVLEGVKPNSITIASAVSACTNLSLLRHGR 382



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 156/319 (48%), Gaps = 10/319 (3%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G++  E   S +L    QTG ++DA R+F  + E++   WT ++  Y   G  E+ + LF
Sbjct: 119 GVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLF 178

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M++E VRPD F    V  +C++L +   G+ V+   + +G + +  V  +++DM+ KC
Sbjct: 179 YLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKC 238

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  D A   F  +  ++V  WN M++GY   G+  +AL     +    +KPD  T+ +++
Sbjct: 239 GRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAII 298

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL---PH 488
           S    +  FE    +F  +  +    P++  +  +I    ++    +A+ + + +     
Sbjct: 299 SGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGV 358

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVA 546
           KPNS+  ++ +S C     ++HG     +  ++E +++   +   L + YA C R  +VA
Sbjct: 359 KPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKC-RSVEVA 417

Query: 547 SIRSSMKSKNVKKFAAYSW 565
             +  M    +K+    SW
Sbjct: 418 RRKFGM----IKQTDLVSW 432



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 107/212 (50%), Gaps = 6/212 (2%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFS--ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +NG   +A +L + M  +   PD+     +S++  C KL +L  G  VH + VV GVD  
Sbjct: 66  RNGVLNNAAMLLSSM--DLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVC 123

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             + S L+++YC+ G  +DA  +F+ M  RNV SW +++  Y   G   E + L+  ++ 
Sbjct: 124 EFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVN 183

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           E ++PD F F  V  AC     +  G++ +D + ++ G   +      ++++  +   +D
Sbjct: 184 EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSI-GFEGNSCVKGSILDMFIKCGRMD 242

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
            A    + +  K +  +W+ ++S    KG+ K
Sbjct: 243 IARRFFEEIEFK-DVFMWNIMVSGYTSKGEFK 273


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/612 (38%), Positives = 360/612 (58%), Gaps = 44/612 (7%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +NT I G       +E+++++  M+K+   P  +T    L ACA++LD   G ++H  +V
Sbjct: 76  FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 + FV+ +L ++Y K G ID A  +FD + ++N  SW   ISGY+  G+ ++ ID
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAID 195

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTG-------------------------------- 271
           +F+ +  +GL PD  ++  +L AC +TG                                
Sbjct: 196 MFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYG 255

Query: 272 ---RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
               ++ A  +F  + EK+ V W++MI GY  NG  ++AL LF +ML+E ++PD +++  
Sbjct: 256 KCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVG 315

Query: 329 VVSSCAKLASLYHG----QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           V+ SCA+L +L  G     +++G   +    D+ ++ +ALIDMY KCG  D AW VF  M
Sbjct: 316 VLCSCARLGALELGDWASNLINGNEFL----DNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             ++ V WN+ I+G A +G   +AL L+ ++ +  +KPD  TFV +L AC HA L E G+
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            +F+S+  V  +TP ++HY CM++LLGR+  +D+A  LIKS+P + N+++W  LL  C +
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             D +  E+  + L  LEP ++G Y++LSN+YAA  +WE+ A IRS M  + VKK   YS
Sbjct: 492 HRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           WIE+D  VH+F+  D +HP +E IY +L +L K L+ AG+ P T  VL D +EEEK   I
Sbjct: 552 WIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFI 611

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
             HSEKLA+A+ LI        I ++KN+RVCGDCH  +K  S I GR II+RD+NRFH 
Sbjct: 612 GCHSEKLAVAFGLISTAPN-DKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHC 670

Query: 685 FVGGNCSCKDNW 696
           F  G CSCKD W
Sbjct: 671 FTDGLCSCKDYW 682



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 37/373 (9%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L+  K IH  ++   L  + ++ N +       G  + +  + D+    N+  +N MI G
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------------------- 270
            + N   ++ I+++  M+  GL+PD  T   +L AC +                      
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 271 --------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                         G ID+A ++F  I +K+   WT  I GY   GK  +A+ +F  +L 
Sbjct: 143 AFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLE 202

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             +RPD FS+  V+S+C +   L  G+ +       G+  ++ V++AL+D Y KCG  + 
Sbjct: 203 MGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMER 262

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A +VF+ M  +N+VSW+SMI GYA NG   EAL L+ K+L E LKPD +  V VL +C  
Sbjct: 263 ARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCAR 322

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
               E G    + I+    +  S+   A +I++  +   +D+A ++ + +  K + ++W+
Sbjct: 323 LGALELGDWASNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWEVFRGM-RKKDRVVWN 380

Query: 497 TLLSVCAMKGDIK 509
             +S  AM G +K
Sbjct: 381 AAISGLAMSGHVK 393



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 163/341 (47%), Gaps = 37/341 (10%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           +L++ + + G + +   +FD +P ++  S+   I+G+   G  REA+ +F R+ +    P
Sbjct: 148 SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRP 207

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             ++ V  L+AC +  DLR G+ I   I    +  NVFV  AL D Y K G +++AR +F
Sbjct: 208 DSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVF 267

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
           D M  +N+VSW+ MI GY  NG PK+ +DLF +M   GL PD   +  +L +C       
Sbjct: 268 DGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALE 327

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + GR+D A  +F  +++KD V W   I G  
Sbjct: 328 LGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLA 387

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDL 358
            +G  +DAL LF +M    ++PD+ +   ++ +C     +  G +  +    V  +  ++
Sbjct: 388 MSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEI 447

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
                ++D+  + G  D+A  +   MP   N + W +++ G
Sbjct: 448 EHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 160/342 (46%), Gaps = 38/342 (11%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           LGL+ D   ++ +L   F  G  + + R+    KE +   + TMI G   N   ++++ +
Sbjct: 36  LGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEI 95

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           ++ M  E + PD F+   V+ +CA++     G  +H   V  G + D  V  +LI++Y K
Sbjct: 96  YHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTK 155

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  D+A+ VF+ +P +N  SW + I+GY   G+  EA+ ++ +LL+  L+PDSF+ V V
Sbjct: 156 CGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEV 215

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC        G+   D     +G+  ++     +++  G+  ++++A  +   +  K 
Sbjct: 216 LSACKRTGDLRSGE-WIDEYITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEK- 273

Query: 491 NSLIWSTL-----------------------------------LSVCAMKGDIKHGEMAA 515
           N + WS++                                   L  CA  G ++ G+ A+
Sbjct: 274 NIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWAS 333

Query: 516 RHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
             +   E + N+     L +MYA CGR +    +   M+ K+
Sbjct: 334 NLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKD 375



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 35/282 (12%)

Query: 6   KLRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K R+AID    L   G      +  +++  C R  D+   + +  ++  N    N  F+ 
Sbjct: 189 KCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNV-FVA 247

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
             L+ FY K G +  AR +FD M  ++I+SW++++                         
Sbjct: 248 TALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQ------------------------ 283

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                  G+A+ G  +EAL +F +M  +  +P  Y  V  L +CA+L  L  G      I
Sbjct: 284 -------GYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLI 336

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  N  +  AL DMYAK G +D+A  +F  M  ++ V WN  ISG   +G  K  +
Sbjct: 337 NGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDAL 396

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
            LF +M+  G+ PD  T   +L AC   G +++  R F+ ++
Sbjct: 397 GLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSME 438



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 102/262 (38%), Gaps = 36/262 (13%)

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
            + L H + +H   + LG+D+D  + + ++      G T+ ++ + +     N+  +N+M
Sbjct: 20  FSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTM 79

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I G   N    E++ +Y  + +E L PDSFTF  VL AC      E G     S+    G
Sbjct: 80  IRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK-MHSLVVKAG 138

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK-------------------------- 489
                     +INL  +   +D A  +   +P K                          
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198

Query: 490 --------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACG 540
                   P+S     +LS C   GD++ GE    ++ E   + N      L + Y  CG
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCG 258

Query: 541 RWEDVASIRSSMKSKNVKKFAA 562
             E   S+   M  KN+  +++
Sbjct: 259 NMERARSVFDGMLEKNIVSWSS 280


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 359/601 (59%), Gaps = 4/601 (0%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A+A    V   R +FD++P R+ +  N  I  + N GF RE +QVF  M     +P 
Sbjct: 81  LMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPD 140

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT    L AC+   ++  GK+IHG      L   +FV N L  MY K G + +AR + D
Sbjct: 141 HYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLD 200

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RI 273
            M+ R++VSWN +++GY +N +    +++ +EM+ + ++ D  T++++L A   T    +
Sbjct: 201 EMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENV 260

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F  + +K  V W  MI  Y +N    +A+ L++ M ++   PD  SI+SV+ +C
Sbjct: 261 MYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPAC 320

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
              ++L  G+ +HG      +  +LL+ +ALIDMY KCG  D A  VF  M +R+VVSW 
Sbjct: 321 GDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWT 380

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI+ Y  +G+  +A+AL+ K+    L PDS  FV+ L+AC HA L E G++ F  ++  
Sbjct: 381 AMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDH 440

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + ITP L+H ACM++LLGR+  V +A   I+ +P +PN  +W  LL  C +  +   G +
Sbjct: 441 YKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLL 500

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  LF+L P  +G Y++LSN+YA  GRWE+V +IR+ MKSK +KK    S +E++  +H
Sbjct: 501 AADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIH 560

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F+  DR+HP++  IY EL  L+KK++E G+ P+++  LHD +EE+K   +  HSEKLA+
Sbjct: 561 TFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAI 620

Query: 634 AYCLI--KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
            + L+  ++      IRI KN+R+CGDCH+  K  S I  R II+RD+NRFH F  G CS
Sbjct: 621 VFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCS 680

Query: 692 C 692
           C
Sbjct: 681 C 681



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 175/378 (46%), Gaps = 52/378 (13%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD-------- 108
           +T F+ N L+  Y K G L  AR + D+M  RD++SWN+L++ +A++    D        
Sbjct: 174 STLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREM 233

Query: 109 -----------------------------LRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
                                        ++ +F KM  +  VS+N  I  +       E
Sbjct: 234 ESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 293

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A++++S M+ D FEP   +  S L AC     L  GK+IHG I    L  N+ + NAL D
Sbjct: 294 AVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 353

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYAK G +D+AR +F+ M +R++VSW  MIS Y  +G+    + LF +MQ  GL PD + 
Sbjct: 354 MYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIA 413

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM 314
               L AC   G +++    F ++ +   +         M+    + GK ++A     EM
Sbjct: 414 FVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEM 473

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKC 371
             E   P++    +++ +C   ++   G +   K   L  +     +L+S    ++Y K 
Sbjct: 474 PME---PNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLS----NIYAKA 526

Query: 372 GVTDDAWTVFNMMPTRNV 389
           G  ++   + N+M ++ +
Sbjct: 527 GRWEEVTNIRNIMKSKGL 544



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 160/381 (41%), Gaps = 82/381 (21%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+S + + G + + R + D+M  RD VS+N+ +AG+A      +AL+V   M+  +  
Sbjct: 180 NGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKIS 239

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  S L A +                      N    N    MY K         +
Sbjct: 240 HDAGTMASLLPAVS----------------------NTTTENV---MYVKD--------M 266

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           F +M  ++LVSWN+MI  Y+KN  P + ++L+  M+  G  PD V+++++L AC  T   
Sbjct: 267 FFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSAL 326

Query: 271 --------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G +D A  +F  +K +D V WT MI  Y
Sbjct: 327 SLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAY 386

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  DA+ LF++M    + PD  +  + +++C+     + G +  G++    + D  
Sbjct: 387 GFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS-----HAGLLEEGRSCFKLMTDHY 441

Query: 359 LVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALAL 411
            ++      + ++D+  + G   +A+     MP   N   W +++     +      L  
Sbjct: 442 KITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLA 501

Query: 412 YDKLLQENLKPDSFTFVSVLS 432
            DKL Q  L P+   +  +LS
Sbjct: 502 ADKLFQ--LAPEQSGYYVLLS 520



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 15/159 (9%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           + T ++  C   + + L K++  +++     PN   L N L+  YAK G L  ARD+F+ 
Sbjct: 312 SITSVLPACGDTSALSLGKKIHGYIERKKLIPNL-LLENALIDMYAKCGCLDRARDVFEN 370

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREA 140
           M  RD++SW A++SA+  SG   D  ALF KM     + DS+++ T +A  ++ G   E 
Sbjct: 371 MKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEG 430

Query: 141 LQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDL--RRGK 176
              F  M       TD+  ++  L   A ++DL  R GK
Sbjct: 431 RSCFKLM-------TDHYKITPRLEHLACMVDLLGRAGK 462



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 43/287 (14%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS----WNALL 97
           A  L S M+ + +EP+   + + +L     +  L   + +   +  + +I      NAL+
Sbjct: 294 AVELYSGMEADGFEPDAVSITS-VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 352

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
             +A+ G +   R +F+ M  RD VS+   I+ +   G   +A+ +FS+MQ     P   
Sbjct: 353 DMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSI 412

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
             V+ L AC+    L  G+                    +TD Y     ++    + D +
Sbjct: 413 AFVTTLAACSHAGLLEEGRSCF---------------KLMTDHYKITPRLEHLACMVDLL 457

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID--- 274
                           + G+ K+     QEM    + P+E     +LGAC      D   
Sbjct: 458 G---------------RAGKVKEAYKFIQEMP---MEPNERVWGALLGACRVHSNTDIGL 499

Query: 275 -DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
             A +LF +  E+    +  +   Y + G+ E+   + N M S+ ++
Sbjct: 500 LAADKLFQLAPEQSGY-YVLLSNIYAKAGRWEEVTNIRNIMKSKGLK 545


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 370/639 (57%), Gaps = 38/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + +       R +FD M  RD +S+N+ IAG A  G   EA+ +F ++ +   +
Sbjct: 354 NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLK 413

Query: 154 PTDYTHVSALNACAQLLD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P  YT  S L A + L + L   KQ+H   +  N   + FV  AL D Y++   + +A  
Sbjct: 414 PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEI 473

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LF+R +N +LV+WN M++GY ++    K + LF  M   G   D+ T++ +   C     
Sbjct: 474 LFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFA 532

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + G +  A   F  I   D+V WTTMI G
Sbjct: 533 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISG 592

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             +NG+EE A  +F++M    V PD+F+I+++  + + L +L  G+ +H  A+ L   +D
Sbjct: 593 CIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTND 652

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V ++L+DMY KCG  DDA+ +F  +   N+ +WN+M+ G AQ+G+  E L L+ ++  
Sbjct: 653 PFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKS 712

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             +KPD  TF+ VLSAC H+ L      H  S+   +GI P ++HY+C+ + LGR+  V 
Sbjct: 713 LGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVK 772

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A +LI+S+  + ++ ++ TLL+ C ++GD + G+  A  L ELEP+++  Y++LSNMYA
Sbjct: 773 QAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYA 832

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  +W+++   R+ MK   VKK   +SWIE+ NK+H FV +DR++ +TE+IY ++  +I+
Sbjct: 833 AASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIR 892

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            +++ G+ P T   L D +EEEK +++ YHSEKLA+A+ L+  P   TPIR++KN+RVCG
Sbjct: 893 DIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPS-TPIRVIKNLRVCG 951

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  MK+ + +  R I+LRD+NRFH F  G CSC D W
Sbjct: 952 DCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 132/389 (33%), Positives = 203/389 (52%), Gaps = 35/389 (8%)

Query: 51  LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLR 110
           L F E    FL N L+  Y+K G L YAR +FDKMP RD++SWN++L+A+A+S       
Sbjct: 66  LTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSS------ 119

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
                    + V  N            ++A  +F  +++D    +  T    L  C    
Sbjct: 120 ---------ECVVENI-----------QQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 159

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            +   +  HG      L G+ FV  AL ++Y K G++ + + LF+ M  R++V WNLM+ 
Sbjct: 160 YVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLK 219

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
            YL+ G  ++ IDL       GLNP+E+T+  +      +G   DAG++       D   
Sbjct: 220 AYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARI---SGDDSDAGQVKSFANGNDASS 276

Query: 291 WTTMIV------GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            + +I        Y  +G+    L  F +M+  DV  D+ +   ++++  K+ SL  GQ 
Sbjct: 277 VSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQ 336

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VH  A+ LG+D  L VS++LI+MYCK      A TVF+ M  R+++SWNS+I G AQNG 
Sbjct: 337 VHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGL 396

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSA 433
           ++EA+ L+ +LL+  LKPD +T  SVL A
Sbjct: 397 EVEAVCLFMQLLRCGLKPDQYTMTSVLKA 425



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 143/527 (27%), Positives = 241/527 (45%), Gaps = 81/527 (15%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQ---DLRALF--- 113
           F+   L++ Y K GK+   + LF++MP RD++ WN +L A+   G  +   DL + F   
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 114 ----DKMPIR--DSVSYNTAIAG------------------FANKGFSR--------EAL 141
               +++ +R    +S + + AG                  F NKG S           L
Sbjct: 241 GLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALL 300

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           + F+ M +   E    T +  L    ++  L  G+Q+H   +   L   + V N+L +MY
Sbjct: 301 KCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMY 360

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K  +   AR +FD M+ R+L+SWN +I+G  +NG   + + LF ++   GL PD+ T++
Sbjct: 361 CKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMT 420

Query: 262 NILGAC--------------------------FQTGRIDDAGRLFHVIKEK--------- 286
           ++L A                           F +  + DA      +KE          
Sbjct: 421 SVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNF 480

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W  M+ GYTQ+      L LF  M  +  R D F++++V  +C  L ++  G+ VH
Sbjct: 481 DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVH 540

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
             A+  G D DL VSS ++DMY KCG    A   F+ +P  + V+W +MI+G  +NG++ 
Sbjct: 541 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEE 600

Query: 407 EALALYDKLLQENLKPDSFTFVSV--LSACLHADLFERG-QNHFDSISAVHGITPSLDHY 463
            A  ++ ++    + PD FT  ++   S+CL A   E+G Q H +++       P +   
Sbjct: 601 RAFHVFSQMRLMGVLPDEFTIATLAKASSCLTA--LEQGRQIHANALKLNCTNDPFVG-- 656

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
             ++++  +   +D A  L K +    N   W+ +L   A  G+ K 
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRI-EMMNITAWNAMLVGLAQHGEGKE 702



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 104/188 (55%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   + +L  + + G +   +  FD +P+ D V++ T I+G    G    A  VFS+M+
Sbjct: 551 DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMR 610

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P ++T  +   A + L  L +G+QIH   +  N   + FV  +L DMYAK G ID
Sbjct: 611 LMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSID 670

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LF R+   N+ +WN M+ G  ++G+ K+ + LF++M+ LG+ PD+VT   +L AC 
Sbjct: 671 DAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACS 730

Query: 269 QTGRIDDA 276
            +G + +A
Sbjct: 731 HSGLVSEA 738


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/639 (36%), Positives = 372/639 (58%), Gaps = 41/639 (6%)

Query: 95  ALLSAHARSG-SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           AL+    + G  +Q  R +FDKM  ++ V++   I  ++  G   +A+ +F R+    + 
Sbjct: 186 ALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYT 245

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T  S L+AC +L     GKQ+H  ++   L  +VFV   L DMYAK   ++ +R +
Sbjct: 246 PDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKI 305

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F+ M + N++SW  +ISGY+++ Q ++ I LF  M    + P+  T S++L AC      
Sbjct: 306 FNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDF 365

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         ++G ++ A + F+++ EK+ + + T     
Sbjct: 366 GIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNT---AA 422

Query: 299 TQNGKEEDALILFN-EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             N K  D+   FN E+    V    F+ + ++S  A + ++  G+ +H   V  G   +
Sbjct: 423 DANAKALDSDESFNHEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTN 482

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           L +++ALI MY KCG  + A  VFN M  RNV++W S+I+G+A++G   +AL L+ ++L+
Sbjct: 483 LCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLE 542

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             +KP+  T+++VLSAC H  L +    HF+S+   H I+P ++HYACM++LLGRS  + 
Sbjct: 543 IGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLL 602

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A++ I S+P   ++L+W T L  C +  + K GE AA+ + E EP +   YI+LSN+YA
Sbjct: 603 EAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYA 662

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           + GRW+DVA++R SMK K + K   YSWIE+DN+VHKF   D +HP+   IY+EL +L  
Sbjct: 663 SEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELAL 722

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K++  G+ PNT  VLHD ++E+K + +  HSEK+A+AY LI  P    PIR+ KN+RVCG
Sbjct: 723 KIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKP-KPIRVFKNLRVCG 781

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K+ S + GR I++RD+NRFHH   G CSC D W
Sbjct: 782 DCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/544 (24%), Positives = 244/544 (44%), Gaps = 85/544 (15%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP-- 86
           L+  C R  ++EL K L  H  ++   P  + L N L+  Y+K G    A  +F  M   
Sbjct: 45  LLKACIRSGNLELGKLLH-HKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            RD++SW+A++S                                FAN      AL  F  
Sbjct: 104 KRDLVSWSAIISC-------------------------------FANNSMESRALLTFLH 132

Query: 147 M---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYA 202
           M    ++   P +Y   + L +C+  L    G  I   ++  G    +V V  AL DM+ 
Sbjct: 133 MLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFT 192

Query: 203 KGG-EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           KGG +I  AR +FD+M ++NLV+W LMI+ Y + G     +DLF  + +    PD+ T++
Sbjct: 193 KGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLT 252

Query: 262 NILGAC-----FQTGR------------------------------IDDAGRLFHVIKEK 286
           ++L AC     F  G+                              ++++ ++F+ +   
Sbjct: 253 SLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH 312

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           + + WT +I GY Q+ +E++A+ LF  ML   V P+ F+ SSV+ +CA L     G+ +H
Sbjct: 313 NVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLH 372

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
           G+ + LG+     V ++LI+MY + G  + A   FN++  +N++S+N+  +  A+     
Sbjct: 373 GQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSD 432

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           E+     ++    +    FT+  +LS         +G+    ++    G   +L     +
Sbjct: 433 ESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGE-QIHALIVKSGFGTNLCINNAL 489

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG--EMAARHLFELEPI 524
           I++  +  + + A+ +   + ++ N + W++++S     G  KHG    A    +E+  I
Sbjct: 490 ISMYSKCGNKEAALQVFNDMGYR-NVITWTSIIS-----GFAKHGFATKALELFYEMLEI 543

Query: 525 NAGP 528
              P
Sbjct: 544 GVKP 547



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 97/184 (52%), Gaps = 15/184 (8%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP- 385
           S ++ +C +  +L  G+++H K +  G+  D ++ ++LI +Y KCG  ++A ++F  M  
Sbjct: 43  SLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGH 102

Query: 386 -TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPDSFTFVSVLSACLHADLFE 441
             R++VSW+++I+ +A N  +  AL  +  +LQ +   + P+ + F ++L +C +   F 
Sbjct: 103 HKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFT 162

Query: 442 RGQNHFDSISAVHGITPSLDHYAC----MINLLGRSS-DVDKAVDLIKSLPHKPNSLIWS 496
            G     +I A    T   D + C    +I++  +   D+  A  +   + HK N + W+
Sbjct: 163 TGL----AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHK-NLVTWT 217

Query: 497 TLLS 500
            +++
Sbjct: 218 LMIT 221



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 31/109 (28%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           ++N L+  Y+K G    A  +F+ M  R++I+W ++                        
Sbjct: 485 INNALISMYSKCGNKEAALQVFNDMGYRNVITWTSI------------------------ 520

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
                  I+GFA  GF+ +AL++F  M +   +P + T+++ L+AC+ +
Sbjct: 521 -------ISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHV 562


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 243/703 (34%), Positives = 383/703 (54%), Gaps = 68/703 (9%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C  V D++  K+L S++ L             LL  Y K G +  A D+F+     
Sbjct: 251 LLAACASVGDLQKGKQLHSYL-LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++ WN +L A+   G + DL   F                            ++F +MQ
Sbjct: 310 NVVLWNLMLVAY---GQISDLAKSF----------------------------EIFGQMQ 338

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P  +T+   L  C     +  G+QIH   +      +++V   L DMY+K   +D
Sbjct: 339 ATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLD 398

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR + + +  R++VSW  MI+GY+++   ++ +  F+EMQ  G+ PD + +++   AC 
Sbjct: 399 KARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACA 458

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR ++A  LF  I  KD + W  
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNG 518

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+ Q+   E AL++F +M     + + F+  S +S+ A LA +  G+ VHG+AV  G
Sbjct: 519 LISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              +  V++ALI +Y KCG  +DA  +F+ M  RN VSWN++I   +Q+G+ LEAL L+D
Sbjct: 579 HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFD 638

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE LKP+  TF+ VL+AC H  L E G ++F S+S V+G+ P  DHYAC++++LGR+
Sbjct: 639 QMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRA 698

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   +  +P   N++IW TLLS C +  +I+ GE+AA+HL ELEP ++  Y++LS
Sbjct: 699 GQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLS 758

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N YA  G+W +   +R  MK + ++K    SWIE+ N VH F   DR HP ++ IY+ LS
Sbjct: 759 NAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLS 818

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L  +L + G+      + H+ ++E+K  +   HSEKLA+A+ L+  P  + P+R++KN+
Sbjct: 819 ELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCI-PLRVIKNL 877

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH +MKF S++  R I+LRD  RFHHF  G+CSC D W
Sbjct: 878 RVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 251/506 (49%), Gaps = 46/506 (9%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA-----RDLFDKMPLRDIISWNAL 96
           A RL S M      P T ++ + +L    K GKLF         ++ +    +    NAL
Sbjct: 128 AFRLYSQMHWTAVIP-TPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGNAL 185

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           ++ +   GS +    +F  M   D V++NT I+G A  G    ALQ+F  MQ     P  
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
            T  S L ACA + DL++GKQ+H  ++   +  +     +L D+Y K G+I+ A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI--- 273
            +  N+V WNLM+  Y +     K  ++F +MQ  G++P++ T   IL  C  TG+I   
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG 365

Query: 274 --------------------------------DDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                           D A ++  +++++D V WT+MI GY Q+
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
              E+AL  F EM    V PD   ++S  S+CA + ++  G  +H +  V G   D+ + 
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           + L+++Y +CG +++A+++F  +  ++ ++WN +I+G+ Q+    +AL ++ K+ Q   K
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK 545

Query: 422 PDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            + FTF+S +SA  + AD+ +  Q H  ++   H  T   +    +I+L G+   ++ A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGH--TSETEVANALISLYGKCGSIEDAK 603

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKG 506
            +   +  + N + W+T+++ C+  G
Sbjct: 604 MIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/539 (26%), Positives = 233/539 (43%), Gaps = 83/539 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A++G V   R +F ++  RD VS+   ++G+A +G  +EA +++S+M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT Y   S L+AC +     +G+ IH ++         FV NAL  +Y   G    A  +
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  M   + V++N +ISG+ + G  +  + +F EMQL GL PD VTV+++L AC      
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G I+ A  +F++    + V W  M+V Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q      +  +F +M +  + P+KF+   ++ +C     +  G+ +H  ++  G + D+
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS  LIDMY K    D A  +  M+  R+VVSW SMI GY Q+    EALA + ++   
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + PD+    S  SAC       +G      +  V G    +  +  ++NL  R    ++
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEE 500

Query: 479 AVDLIKSLPHKPNSLIWSTL-----------------------------------LSVCA 503
           A  L + + HK + + W+ L                                   +S  A
Sbjct: 501 AFSLFREIDHK-DEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALA 559

Query: 504 MKGDIKHGE------MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
              DIK G+      +   H  E E  NA     L ++Y  CG  ED   I S M  +N
Sbjct: 560 NLADIKQGKQVHGRAVKTGHTSETEVANA-----LISLYGKCGSIEDAKMIFSEMSLRN 613



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 174/394 (44%), Gaps = 58/394 (14%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  D +  + ++    + G +  A ++F  +  +D+V W  M+ GY Q G  ++A  L+
Sbjct: 73  GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLY 132

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           ++M    V P  + +SSV+S+C K      G+++H +        +  V +ALI +Y   
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  VF  M   + V++N++I+G+AQ G    AL ++D++    L+PD  T  S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 432 SAC-----------LHADLFERGQNHFDSIS---------------AVHGITPSLDH--- 462
           +AC           LH+ L + G + FD I+                 H I    D    
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMS-FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 463 --YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGE----M 513
             +  M+   G+ SD+ K+ ++   +      PN   +  +L  C   G I+ GE    +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           + ++ FE +   +G   +L +MY+     +    I   ++ ++V      SW  +   + 
Sbjct: 372 SIKNGFESDMYVSG---VLIDMYSKYRCLDKARKILEMLEKRDV-----VSWTSM---IA 420

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            +V  D          EE     K++Q+ G  P+
Sbjct: 421 GYVQHD--------FCEEALATFKEMQDCGVWPD 446



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 58/100 (58%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H  +VV G+  D L+ + LID+Y K G+   A  VF  + +R+ VSW +M++GYAQ G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGL 124

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             EA  LY ++    + P  +   SVLSAC    LF +G+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/740 (33%), Positives = 412/740 (55%), Gaps = 64/740 (8%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL---- 61
           K R+  D +  R    T  ++T L+    + N  + A RL + M     EP+   L    
Sbjct: 92  KARELFDGMVER----TAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 62  --------HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
                    N ++  +    KL Y  +L         +  N+L+ A+ ++  +     LF
Sbjct: 148 SGFGELETKNVIVQIHTHVIKLGYEYNL---------MVCNSLVDAYCKTHCLYLASQLF 198

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
             M  +D+V++N+ + G++N+G + EA+++F  +     +P+D+T  + L+A   L D +
Sbjct: 199 KHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTK 258

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q+HG ++  N   NVFV NAL D Y+K  ++D+   LF  M   + +S+N++I+ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYA 318

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------------GACFQTG 271
            NGQ K+  DLF+++Q    +  +   + +L                      GA F++ 
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES- 377

Query: 272 RID--------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           R++              +A ++F  I  K  V WT MI  Y Q GK E+ + +F++M   
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V  D+ + +S++ +CA LAS+  G+ +H   +  G   ++   SAL+D Y KCG   DA
Sbjct: 438 GVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA 497

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F  MP RN VSWN++I+ YAQNG     L  + +++Q   KPDS +F+SVLSAC H 
Sbjct: 498 IKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHC 557

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
              E    HF+S++ ++ +TP  +HY  M+++L R+   D+A  L+  +P +P+ ++WS+
Sbjct: 558 GFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSS 617

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           +L+ C +  + +  + AA  LF +E + +A PYI +SN+YA  G+W++VA ++ +M+ + 
Sbjct: 618 VLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRG 677

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V+K  AYSW+EI ++ H F + D++HPE + I  +++ L K++++ G+ P+T   LHD  
Sbjct: 678 VRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVD 737

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           E  K++S+ YHSE+ A+A+ L+  P G +PI +MKN+R C DCH  +K  S I+ R II+
Sbjct: 738 EVIKIESLKYHSERFAIAFALMNTPDG-SPIVVMKNLRACTDCHAAIKVISQIVEREIIV 796

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RDS+RFHHF  G CSC D W
Sbjct: 797 RDSSRFHHFKDGVCSCGDYW 816



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 241/515 (46%), Gaps = 70/515 (13%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           + +H+    + PNT   + ++ +F  + G L +A  +FD+MP ++ IS N ++S H + G
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLER-GDLVHAHQVFDQMPAKNTISLNMMISGHLKFG 88

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
            +   R LFD M  R +VS+   I G+     S+EA ++++ M++   EP   T V+ L+
Sbjct: 89  KLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
              +L       QIH  ++      N+ V N+L D Y K   +  A  LF  M N++ V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------------- 268
           +N +++GY   G  ++ I+LF E+   G+ P + T + +L A                  
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 269 -------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                              +  ++D+ G+LF  + E D + +  +I  Y  NG+ +++  
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF ++        +F  ++++S      +L  G+ +H +A+ +G + +  V +AL+DMY 
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYA 388

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KC    +A  +F+ +  ++ V W +MI+ Y Q G+  E + ++  + +  +  D  TF S
Sbjct: 389 KCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 430 VLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYA---CMINLLGRSSD 475
           +L AC           LH+ L   G      +S V+  +  LD YA   CM         
Sbjct: 449 ILRACANLASISLGRQLHSLLIRSG-----FMSNVYSGSALLDTYAKCGCM--------- 494

Query: 476 VDKAVDLIKSLPHKP--NSLIWSTLLSVCAMKGDI 508
                D IKS    P  NS+ W+ L+S  A  G++
Sbjct: 495 ----TDAIKSFGEMPERNSVSWNALISAYAQNGNV 525



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 161/364 (44%), Gaps = 49/364 (13%)

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           +  T + ++   N+ A    L     I   IV      N    N   + + + G++  A 
Sbjct: 4   YRATLFQNLVLRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAH 63

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD+M  +N +S N+MISG+LK G+  K  +LF  M                       
Sbjct: 64  QVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMV---------------------- 101

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
                        E+  V WT +I GY Q+ + ++A  L+ +M    + PD  ++ +++S
Sbjct: 102 -------------ERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
              +L +      +H   + LG + +L+V ++L+D YCK      A  +F  M  ++ V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           +NS++ GY+  G + EA+ L+ +L    +KP  FTF ++LSA +  D  + GQ       
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQ------ 262

Query: 452 AVHGITPSLDHY------ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            VHG     +          +++   +   VD+   L   +P + + + ++ +++  A  
Sbjct: 263 -VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMP-ELDGISYNVVITSYAWN 320

Query: 506 GDIK 509
           G  K
Sbjct: 321 GQFK 324


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 364/644 (56%), Gaps = 37/644 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            DI+    L+  +A+ G  +  + LF  +  RD V+++  IA     G+  EAL +F  MQ
Sbjct: 363  DILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ 422

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              + +P   T +S L ACA L  L+ GK IH   V  ++  ++    AL  MYAK G   
Sbjct: 423  NQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFT 482

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
             A   F+RM++R++V+WN +I+GY + G P   ID+F +++L  +NPD  T+  ++ AC 
Sbjct: 483  AALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542

Query: 268  -------------------FQT---------------GRIDDAGRLFHVIK-EKDNVCWT 292
                               F++               G +  A  LF+     KD V W 
Sbjct: 543  LLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602

Query: 293  TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
             +I  Y QNG  ++A+  F++M  E+  P+  +  SV+ + A LA+   G   H   + +
Sbjct: 603  VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM 662

Query: 353  GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            G   + LV ++LIDMY KCG  D +  +FN M  ++ VSWN+M++GYA +G    A+AL+
Sbjct: 663  GFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722

Query: 413  DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
              + +  ++ DS +FVSVLSAC HA L E G+  F S+S  + I P L+HYACM++LLGR
Sbjct: 723  SLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGR 782

Query: 473  SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
            +   D+ +  IK +P +P++ +W  LL  C M  ++K GE+A  HL +LEP N   +++L
Sbjct: 783  AGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
            S++YA  GRW D    RS M    +KK    SW+E+ NKVH F   D++HP+ E ++   
Sbjct: 843  SSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLW 902

Query: 593  SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            + L++K+++ G+ P+   VL + +EE+K   +  HSE+LA+ + L+  P G T I+I+KN
Sbjct: 903  NTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST-IQIVKN 961

Query: 653  IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +RVC DCH   KF S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/516 (29%), Positives = 252/516 (48%), Gaps = 75/516 (14%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN 94
           +++++EL + +  ++   F    ++ + N L+  Y+K G +  AR +FD+M  +D +SW 
Sbjct: 242 KLSNIELCRSIHGYV---FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWG 298

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            +++ +A +G   ++  LFDKM + + V  N   A                         
Sbjct: 299 TMMAGYAHNGCFVEVLELFDKMKLGN-VRINKVSA------------------------- 332

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                VSA  A A+ +DL +GK+IHG  +   +  ++ V   L  MYAK GE +KA+ LF
Sbjct: 333 -----VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
             +  R+LV+W+ +I+  ++ G P++ + LFQEMQ   + P+ VT+ +IL AC       
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + G    A   F+ +  +D V W ++I GY 
Sbjct: 448 LGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q G   +A+ +F ++    + PD  ++  VV +CA L  L  G  +HG  V LG + D  
Sbjct: 508 QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCH 567

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           V +ALIDMY KCG    A  +FN    T++ V+WN +I  Y QNG   EA++ + ++  E
Sbjct: 568 VKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE 627

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           N  P+S TFVSVL A  +   F  G      I  +  ++ +L   + +I++  +   +D 
Sbjct: 628 NFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLDY 686

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           +  L   + HK +++ W+ +LS  A+ G   HG+ A
Sbjct: 687 SEKLFNEMDHK-DTVSWNAMLSGYAVHG---HGDRA 718



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 239/492 (48%), Gaps = 51/492 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD+     L+  +++ G ++  R +FDKMP RD V++N  IAG +      EA+  F  M
Sbjct: 162 RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSM 221

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    EP+  + ++      +L ++   + IHG +   +    V   N L D+Y+K G++
Sbjct: 222 QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDV 279

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-VSNILGA 266
           D AR +FD+M +++ VSW  M++GY  NG   + ++LF +M+L  +  ++V+ VS  L A
Sbjct: 280 DVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAA 339

Query: 267 --------------CFQTGRIDD--------------------AGRLFHVIKEKDNVCWT 292
                         C    RID                     A +LF  ++ +D V W+
Sbjct: 340 AETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I    Q G  E+AL LF EM ++ ++P++ ++ S++ +CA L+ L  G+ +H   V  
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            +D DL   +AL+ MY KCG    A T FN M +R++V+WNS+INGYAQ G    A+ ++
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CM 466
            KL    + PD+ T V V+ AC          N  D  + +HG+   L   +       +
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALL-------NDLDQGTCIHGLIVKLGFESDCHVKNAL 572

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           I++  +   +  A  L        + + W+ +++     G  K   +++ H   LE  + 
Sbjct: 573 IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHP 631

Query: 527 GPYIMLSNMYAA 538
                +S + AA
Sbjct: 632 NSVTFVSVLPAA 643



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 241/487 (49%), Gaps = 78/487 (16%)

Query: 1   MKAKHKLRQA---IDTLYSRGQAATEEAYT------QLVLDCTRVNDVELAKRLQSHMDL 51
           M  KH+LR++   I T  S   + +   YT      +L+  C  +N +    ++ + + +
Sbjct: 1   MCIKHQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIV 57

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           + ++ + +  H  L++ Y+   K   AR +FD  P    I WN+++ A+ RS        
Sbjct: 58  SGFKHHHSITH--LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK------- 108

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
                       YN             EAL+++  M +   EP  YT    L AC   L+
Sbjct: 109 -----------QYN-------------EALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L+ G   HG+I    L  +VF+   L DMY+K G++ +AR +FD+M  R++V+WN MI+G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-GAC----------------------- 267
             ++  P + +D F+ MQL+G+ P  V++ N+  G C                       
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G +D A R+F  + ++D+V W TM+ GY  NG   + L LF++M   +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           VR +K S  S   + A+   L  G+ +HG A+   +D D+LV++ L+ MY KCG T+ A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F  +  R++V+W+++I    Q G   EAL+L+ ++  + +KP+  T +S+L AC    
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 439 LFERGQN 445
           L + G++
Sbjct: 445 LLKLGKS 451



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 88/479 (18%)

Query: 155 TDYTHVS-ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           T+Y H    L++C  L  L    QIH +I+V     +  + + L ++Y+   + D AR +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSV 85

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           FD   N + + WN MI  Y ++ Q  + ++++  M   GL PD+ T + +L AC      
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 271 -------GRIDDAG-------------------------RLFHVIKEKDNVCWTTMIVGY 298
                  G ID  G                          +F  + ++D V W  MI G 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+    +A+  F  M    V P   S+ ++     KL+++   + +HG   V   D   
Sbjct: 206 SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHG--YVFRRDFSS 263

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS+ LID+Y KCG  D A  VF+ M  ++ VSW +M+ GYA NG  +E L L+DK+   
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 419 NLKPDSFTFVSVLSACLHADLFERG--------QNHFDSISAVHGITPSLDHYA------ 464
           N++ +  + VS   A       E+G        Q   DS   V   TP +  YA      
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV--ATPLMVMYAKCGETE 381

Query: 465 ------------------CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCA 503
                              +I  L ++   ++A+ L + + +   KPN +   ++L  CA
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 504 MKGDIKHGEMAARHLFELEP-----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
               +K G+  + H F ++      ++ G    L +MYA CG +    +  + M S+++
Sbjct: 442 DLSLLKLGK--SIHCFTVKADMDSDLSTG--TALVSMYAKCGFFTAALTTFNRMSSRDI 496



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           + T + N L+  YAK G+L Y+  LF++M  +D +SWNA+LS +A  G      ALF  M
Sbjct: 666 SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM 725

Query: 117 PIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                  DSVS+ + ++   + G   E  ++F  M        D  H + +
Sbjct: 726 QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L + +  N+L+  +A+ G +     LF++M  +D+VS+N  ++G+A  G    A+ +FS 
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           MQ+ + +    + VS L+AC     +  G++I
Sbjct: 725 MQESQVQIDSVSFVSVLSACRHAGLVEEGRKI 756


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 370/643 (57%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D     AL+  ++  G  +  R +FD +  +D VS+   +A +       E+L++FSRM+
Sbjct: 179 DAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMR 238

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F+P ++T  S L AC  L     GK +HG     +    +FV   L D+Y K G++D
Sbjct: 239 IVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVD 298

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F+ M   +++ W+ MI+ Y ++ Q ++ I++F  M+   + P++ T++++L AC 
Sbjct: 299 DALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACA 358

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR++++ +LF       +V W T
Sbjct: 359 SLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNT 418

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +IVGY Q G  E ALILF +ML   V+  + + SSV+ +CA +A+L  G  +H  +V   
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI 478

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D + +V +ALIDMY KCG   DA  VF+M+   + VSWN+MI+GY+ +G   EAL  ++
Sbjct: 479 YDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFE 538

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L+   KPD  TFV +LSAC +A L +RGQ +F S+   + I P  +HY CM+ LLGRS
Sbjct: 539 SMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRS 598

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +DKA  L+  +P +P+ ++W  LLS C +  D++ G ++A+ + E+EP +   +++LS
Sbjct: 599 GHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLS 658

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA   RW +VASIR+SMK K ++K    SWIE   +VH F   D +HP+T++I   L 
Sbjct: 659 NIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLE 718

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  K +  G+ P+   VL D ++ +K + +  HSE+LALAY LI+ P  ++P+RI+KN+
Sbjct: 719 WLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTP-SISPLRIIKNL 777

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  +K  S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 778 RICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 250/506 (49%), Gaps = 48/506 (9%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR----DLFDKMPLRDIISWNAL 96
           LA+R  SH    F     T+++  LL    ++G     +    ++  K    D+ + N L
Sbjct: 31  LAQR-TSHSSPEF----NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNIL 85

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L+ + +  S+ D   LFD+MP R++VS+ T I G++      EA+ +FSR+Q +  E   
Sbjct: 86  LNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNP 145

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +   + L         + G  +H  +       + FV  AL D Y+  G  + AR +FD 
Sbjct: 146 FVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDA 205

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------- 267
           +  +++VSW  M++ Y++N   ++ + LF  M+++G  P+  T +++L AC         
Sbjct: 206 IEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVG 265

Query: 268 --------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      ++G +DDA ++F  + + D + W+ MI  Y Q+
Sbjct: 266 KAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQS 325

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
            + E+A+ +F  M    V P++F+++S++ +CA L  L  G  +H   V +G+D ++ VS
Sbjct: 326 EQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVS 385

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY KCG  +++  +F+  P    VSWN++I GY Q G   +AL L+  +L+  ++
Sbjct: 386 NALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQ 445

Query: 422 PDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
               T+ SVL AC      E G Q H  S+  ++     + +   +I++  +  ++  A 
Sbjct: 446 GTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA- 502

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKG 506
            L+  +  + + + W+ ++S  ++ G
Sbjct: 503 RLVFDMLREHDQVSWNAMISGYSVHG 528



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 200/452 (44%), Gaps = 47/452 (10%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           NTA+     + F      +  R      E   Y + S L +C +  D   GK +H +I+ 
Sbjct: 19  NTALCIITQRSF------LAQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIK 72

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                ++F  N L + Y K   +  A  LFD M +RN VS+  +I GY +  +  + I L
Sbjct: 73  KGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGL 132

Query: 245 FQEMQLLG--LNP--------------------------------DEVTVSNILGACFQT 270
           F  +Q  G  LNP                                 +  V   L  C+  
Sbjct: 133 FSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSV 192

Query: 271 -GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G  + A ++F  I+ KD V WT M+  Y +N   E++L LF+ M     +P+ F+ +SV
Sbjct: 193 CGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASV 252

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +C  L     G+ VHG A      ++L V   LID+Y K G  DDA  VF  MP  +V
Sbjct: 253 LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDV 312

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFD 448
           + W+ MI  YAQ+ Q  EA+ ++ ++ +  + P+ FT  S+L AC    DL    Q H  
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCH 372

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +    G+  ++     ++++  +   ++ ++ L    P+  + + W+T++      G+ 
Sbjct: 373 VVKV--GLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTD-VSWNTVIVGYVQAGNG 429

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +   +  + + E +    G  +  S++  AC 
Sbjct: 430 EKALILFKDMLECQV--QGTEVTYSSVLRACA 459



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 32/163 (19%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
            TE  Y+ ++  C  +  +E   ++ S      Y+ NT  + N L+  YAK G +  AR 
Sbjct: 446 GTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTV-VGNALIDMYAKCGNIKDARL 504

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +FD +   D +SWNA++S                               G++  G   EA
Sbjct: 505 VFDMLREHDQVSWNAMIS-------------------------------GYSVHGLYGEA 533

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           L+ F  M +   +P   T V  L+AC+    L RG+     +V
Sbjct: 534 LKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMV 576


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 247/740 (33%), Positives = 412/740 (55%), Gaps = 64/740 (8%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL---- 61
           K R+  D +  R    T  ++T L+    + N  + A RL + M     EP+   L    
Sbjct: 92  KARELFDGMVER----TAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLL 147

Query: 62  --------HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
                    N ++  +    KL Y  +L         +  N+L+ A+ ++  +     LF
Sbjct: 148 SGFGELETKNVIVQIHTHVIKLGYEYNL---------MVCNSLVDAYCKTHCLYLASQLF 198

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
             M  +D+V++N+ + G++N+G + EA+++F  +     +P+D+T  + L+A   L D +
Sbjct: 199 KHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTK 258

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q+HG ++  N   NVFV NAL D Y+K  ++D+   LF  M   + +S+N++I+ Y 
Sbjct: 259 FGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYA 318

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------------GACFQTG 271
            NGQ K+  DLF+++Q    +  +   + +L                      GA F++ 
Sbjct: 319 WNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFES- 377

Query: 272 RID--------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           R++              +A ++F  I  K  V WT MI  Y Q GK E+ + +F++M   
Sbjct: 378 RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRT 437

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V  D+ + +S++ +CA LAS+  G+ +H   +  G   ++   SAL+D Y KCG   DA
Sbjct: 438 GVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDA 497

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F  MP RN VSWN++I+ YAQNG     L  + +++Q   KPDS +F+SVLSAC H 
Sbjct: 498 IKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVSFLSVLSACSHC 557

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
              E    HF+S++ ++ +TP  +HY  M+++L R+   D+A  L+  +P +P+ ++WS+
Sbjct: 558 GFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEMPFEPSEIMWSS 617

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           +L+ C +  + +  + AA  LF +E + +A PYI +SN+YA  G+W++VA ++ +M+ + 
Sbjct: 618 VLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNVAKVKKAMRDRG 677

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V+K  AYSW+EI ++ H F + D++HPE + I  +++ L K++++ G+ P+T   LHD  
Sbjct: 678 VRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALSKEMEKKGYKPDTTCALHDVD 737

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           E  K++S+ YHSE+ A+A+ L+  P G +PI +MKN+R C DCH  +K  S I+ R II+
Sbjct: 738 EVIKIESLKYHSERFAIAFALMNTPDG-SPIVVMKNLRACTDCHAAIKVISQIVEREIIV 796

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RDS+RFHHF  G CSC D W
Sbjct: 797 RDSSRFHHFKDGVCSCGDYW 816



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 242/515 (46%), Gaps = 70/515 (13%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           + +H+    + PNT   + ++ +F  + G L +A  +FD+MP ++ IS N ++S H + G
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLER-GDLVHAHQVFDQMPAKNTISLNMMISGHLKFG 88

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
            +   R LFD M  R +VS+   I G+     S+EA ++++ M++   EP   T V+ L+
Sbjct: 89  KLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
              +L       QIH  ++      N+ V N+L D Y K   +  A  LF  M N++ V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------------- 268
           +N +++GY   G  ++ I+LF E+   G+ P + T + +L A                  
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 269 -------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                              +  ++D+ G+LF+ + E D + +  +I  Y  NG+ +++  
Sbjct: 269 KTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFD 328

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF ++        +F  ++++S      +L  G+ +H +A+ +G + +  V +AL+DMY 
Sbjct: 329 LFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYA 388

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KC    +A  +F+ +  ++ V W +MI+ Y Q G+  E + ++  + +  +  D  TF S
Sbjct: 389 KCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFAS 448

Query: 430 VLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYA---CMINLLGRSSD 475
           +L AC           LH+ L   G      +S V+  +  LD YA   CM         
Sbjct: 449 ILRACANLASISLGRQLHSLLIRSG-----FMSNVYSGSALLDTYAKCGCM--------- 494

Query: 476 VDKAVDLIKSLPHKP--NSLIWSTLLSVCAMKGDI 508
                D IKS    P  NS+ W+ L+S  A  G++
Sbjct: 495 ----TDAIKSFGEMPERNSVSWNALISAYAQNGNV 525



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 161/364 (44%), Gaps = 49/364 (13%)

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           +  T + ++   N+ A    L     I   IV      N    N   + + + G++  A 
Sbjct: 4   YRATLFQNLVLRNSPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAH 63

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD+M  +N +S N+MISG+LK                                    G
Sbjct: 64  QVFDQMPAKNTISLNMMISGHLK-----------------------------------FG 88

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           ++  A  LF  + E+  V WT +I GY Q+ + ++A  L+ +M    + PD  ++ +++S
Sbjct: 89  KLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLS 148

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
              +L +      +H   + LG + +L+V ++L+D YCK      A  +F  M  ++ V+
Sbjct: 149 GFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           +NS++ GY+  G + EA+ L+ +L    +KP  FTF ++LSA +  D  + GQ       
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQ------ 262

Query: 452 AVHGITPSLDHY------ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            VHG     +          +++   +   VD+   L   +P + + + ++ +++  A  
Sbjct: 263 -VHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMP-ELDGISYNVVITSYAWN 320

Query: 506 GDIK 509
           G  K
Sbjct: 321 GQFK 324


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 359/643 (55%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ +AR  S +D   +F +M   + ++++  I  FA+ G   EAL+ F  MQ
Sbjct: 295 DLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQ 354

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P   T +S LN       L    +IH  I    L     +RNAL ++Y +    D
Sbjct: 355 QEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPD 414

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD++   NL+SWN MI  Y++  +    + LF+ MQ  G+ PD V    ILGAC 
Sbjct: 415 DARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT 474

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G +D A  +   + E+    W  
Sbjct: 475 IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNV 534

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I GY  +G+  +AL  + ++  E +  DK +  SV+++C    SL  G+++H  AV  G
Sbjct: 535 LINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG 594

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D D++V +AL +MY KCG  ++A  +F+ MP R+ VSWN M+  YAQ+G+  E L L  
Sbjct: 595 LDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIR 654

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ QE +K +  TFVSVLS+C HA L   G  +F S+    GI    +HY C+++LLGR+
Sbjct: 655 KMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRA 714

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A   I  +P +P  + W++LL  C ++ D+  G++AA  L EL+P N+   ++LS
Sbjct: 715 GKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLS 774

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+Y+  G W++ A +R +M S+ VKK    S I++ NKVH+F   D +HP    IY+++ 
Sbjct: 775 NIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVE 834

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L   ++EAG+ P+TK+VLHD  EE+K   + YHSEKLA+A+ LI  P   + + I KN+
Sbjct: 835 ELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPE-TSSLHIFKNL 893

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   KF S I GR I++RD++RFHHF  G+CSCKD W
Sbjct: 894 RVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 219/456 (48%), Gaps = 41/456 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL++ + + GS+ D R +FD MP R   ++N+ I+ ++    S EA  +F RMQ
Sbjct: 194 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 253

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++       T +S L+AC     L+ GK +   I   +   ++FV  AL  MYA+    +
Sbjct: 254 QEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPE 313

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F RM   NL++W+ +I+ +  +G   + +  F+ MQ  G+ P+ VT  ++L   F
Sbjct: 314 DAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNG-F 372

Query: 269 QT---------------------------------GRI---DDAGRLFHVIKEKDNVCWT 292
            T                                 GR    DDA  +F  ++  + + W 
Sbjct: 373 TTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWN 432

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI  Y Q  + +DAL LF  M  + ++PD+ +  +++ +C   +     ++VH      
Sbjct: 433 SMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEES 492

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+    LV ++L++MY K G  D A  +   M  + + +WN +INGYA +G+  EAL  Y
Sbjct: 493 GLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAY 552

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLG 471
            KL  E +  D  TF+SVL+AC  +     G+  H +++    G+   +     + N+  
Sbjct: 553 QKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC--GLDSDVIVKNALTNMYS 610

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           +   ++ A  +  S+P + +++ W+ +L   A  G+
Sbjct: 611 KCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGE 645



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 152/636 (23%), Positives = 274/636 (43%), Gaps = 133/636 (20%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           ++  F++   T +   LL+ Y K G L  A+ +F++M  +++++WNA+L  ++  G    
Sbjct: 85  LERGFFQ--NTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWK 142

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
           L                              A+++F+RM  +  +    T ++ LN+   
Sbjct: 143 L------------------------------AVELFTRMLLEGVKANVITFLNVLNSVVD 172

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              LR+GK IH  +       +VFV  AL + Y K G +  AR +FD M  R++ +WN M
Sbjct: 173 PDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSM 232

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR----------- 272
           IS Y  + +  +   +FQ MQ  G   D VT  +IL AC      Q G+           
Sbjct: 233 ISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSF 292

Query: 273 -------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                               +DA ++F  +K+ + + W+ +I  +  +G   +AL  F  
Sbjct: 293 ELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRM 352

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M  E + P++ +  S+++     + L     +H      G+DD   + +AL+++Y +C  
Sbjct: 353 MQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCES 412

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            DDA TVF+ +   N++SWNSMI  Y Q  +  +AL L+  + Q+ ++PD   F+++L A
Sbjct: 413 PDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGA 472

Query: 434 CLHADLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           C          +H  +   VH      G+  S      ++N+  ++ ++D A  +++ + 
Sbjct: 473 CTIG-------SHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD 525

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHL-FELEPINAGPYI---------------- 530
            +  +  W+ L++  A+ G  +    A + L  E  P++   +I                
Sbjct: 526 EQQIT-AWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGK 584

Query: 531 -------------------MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
                               L+NMY+ CG  E+   I  SM  +     +A SW      
Sbjct: 585 MIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-----SAVSW------ 633

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            +  +     H E+    EE+ KLI+K+++ G   N
Sbjct: 634 -NGMLQAYAQHGES----EEVLKLIRKMEQEGVKLN 664



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 205/439 (46%), Gaps = 40/439 (9%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           ++R GS+ D  A F K+  R+ VS+N  I+ +++    +EAL +F  M  +   P   T 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           V+ LN+C    +LR G  +H   +      N  V  AL +MY K G +  A+ +F+ M  
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 220 RNLVSWNLMISGY-LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------- 268
           +N+V+WN M+  Y L+    K  ++LF  M L G+  + +T  N+L +            
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKF 181

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G + DA ++F  +  +    W +MI  Y+ + +
Sbjct: 182 IHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER 241

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +A  +F  M  E  R D+ +  S++ +C    +L HG+ V         + DL V +A
Sbjct: 242 SGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTA 301

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI MY +C   +DA  VF  M   N+++W+++I  +A +G   EAL  +  + QE + P+
Sbjct: 302 LITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPN 361

Query: 424 SFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
             TF+S+L+     + L E  + H   +   HG+  +      ++N+ GR    D A  +
Sbjct: 362 RVTFISLLNGFTTPSGLEELSRIHL--LITEHGLDDTTTMRNALVNVYGRCESPDDARTV 419

Query: 483 IKSLPHKPNSLIWSTLLSV 501
              L   PN + W++++ +
Sbjct: 420 FDQL-ELPNLISWNSMIGI 437



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 186/391 (47%), Gaps = 49/391 (12%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY++ G +  A   F ++  RN+VSWN+MIS Y      ++ + LF  M L G+ P+ +T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 260 VSNILGAC---------------------FQT--------------GRIDDAGRLFHVIK 284
           +  +L +C                     FQ               G + DA  +F  + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 285 EKDNVCWTTMIVGYTQNG-KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           EK+ V W  M+  Y+  G   + A+ LF  ML E V+ +  +  +V++S     +L  G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H          D+ V++AL++ Y KCG   DA  VF+ MP R+V +WNSMI+ Y+ + 
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           +  EA  ++ ++ QE  + D  TF+S+L AC++ +  + G++  +SIS     +  LD +
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISET---SFELDLF 297

Query: 464 --ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH--LF 519
               +I +  R    + A  +   +  + N + WS +++  A  G   H   A R+  + 
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADHG---HCGEALRYFRMM 353

Query: 520 ELEPI--NAGPYIMLSNMYAACGRWEDVASI 548
           + E I  N   +I L N +      E+++ I
Sbjct: 354 QQEGILPNRVTFISLLNGFTTPSGLEELSRI 384


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/687 (34%), Positives = 390/687 (56%), Gaps = 41/687 (5%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +   G A ++   T ++  C       + +++ S + +     +   + N +L+ Y K G
Sbjct: 154 MVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFV-IKLGLSSCVPVANSVLYMYGKCG 212

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
               AR +F++M +R   SWNA++S +   G +    ++F+ M  R  VS+N  IAG+  
Sbjct: 213 DAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQ 272

Query: 134 KGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            G    AL+ FSRM      EP ++T  S L+ACA L  L+ GKQ+H  I+   +  +  
Sbjct: 273 NGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQ 332

Query: 193 VRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + NAL   YAK G ++ AR + D+  + + N++S+  ++ GY+K G  K+          
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQ---------- 382

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                    A  +F V+  +D + WT MIVGY QNG+ ++A+ L
Sbjct: 383 -------------------------AREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMEL 417

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M+     P+  ++++V+S+CA LA L +G+ +H +A+    +  + VS+A+I +Y +
Sbjct: 418 FRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYAR 477

Query: 371 CGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            G    A  VF+ +  R   V+W SMI   AQ+G   +A+ L++++L+  +KPD  T++ 
Sbjct: 478 SGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIG 537

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           V SAC HA   ++G+ +++ +   HGI P + HYACM++LL R+  + +A + I+ +P  
Sbjct: 538 VFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVA 597

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P++++W +LL+ C ++ +    E+AA  L  ++P N+G Y  L+N+Y+ACGRW D A I 
Sbjct: 598 PDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRWNDAARIW 657

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
              K K VKK   +SW  + +KVH F ++D  HP+ + I ++ +++ +++++AGF P+  
Sbjct: 658 KLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIKKAGFVPDLN 717

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VLHD  +E K + +  HSEKLA+A+ LI  P   T +RIMKN+RVC DCH  +KF S +
Sbjct: 718 SVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT-LRIMKNLRVCNDCHTAIKFISKV 776

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + R II+RD+ RFHHF  G CSCKD W
Sbjct: 777 VDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 173/386 (44%), Gaps = 79/386 (20%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE----IDKARWLFDRM--NNRNLVSWNLM 228
           G+ IH   V   L  + ++ N L   YA+ G       +AR LFD +    RN  +WN +
Sbjct: 44  GRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSL 103

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           +S Y K                                   +GR+ DA  +F  + E+D 
Sbjct: 104 LSMYAK-----------------------------------SGRLADARVVFAQMPERDA 128

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT M+VG  + G+  DA+  F +M+ E + P +F +++V+SSCA   +   G+ VH  
Sbjct: 129 VSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSF 188

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---------------------- 386
            + LG+   + V+++++ MY KCG  + A  VF  M                        
Sbjct: 189 VIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLA 248

Query: 387 ---------RNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLH 436
                    R++VSWN++I GY QNG D  AL  + ++L   +++PD FT  SVLSAC +
Sbjct: 249 LSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACAN 308

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIW 495
             + + G+     I    G+  S      +I+   +S  V+ A  ++ K++    N + +
Sbjct: 309 LRMLKMGKQMHSYILRT-GMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISF 367

Query: 496 STLLSVCAMKGDIKHGEMAARHLFEL 521
           + LL      GD K     AR +F++
Sbjct: 368 TALLEGYVKLGDTKQ----AREVFDV 389


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 242/703 (34%), Positives = 384/703 (54%), Gaps = 68/703 (9%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C  V D++  K+L S++ L             LL  Y K G +  A D+F+     
Sbjct: 251 LLAACASVGDLQKGKQLHSYL-LKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRT 309

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++ WN +L A+   G + DL   F+                            +F +MQ
Sbjct: 310 NVVLWNLMLVAY---GQISDLAKSFE----------------------------IFGQMQ 338

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P  +T+   L  C     +  G+QIH   +      +++V   L DMY+K G +D
Sbjct: 339 ATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLD 398

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR + + +  R++VSW  MI+GY+++   ++ +  F+EMQ  G+ PD + +++   AC 
Sbjct: 399 KARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACA 458

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR ++A  LF  I+ KD + W  
Sbjct: 459 GIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNG 518

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+ Q+   + AL++F +M     + + F+  S +S+ A LA +  G+ VHG+AV  G
Sbjct: 519 LISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTG 578

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              +  V++ALI +Y KCG  +DA  +F+ M  RN VSWN++I   +Q+G+ LEAL L+D
Sbjct: 579 HTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFD 638

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ QE LKP+  TF+ VL+AC H  L E G ++F S+S V+G+ P  DHYAC++++LGR+
Sbjct: 639 QMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRA 698

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   +  +P   N++IW TLLS C +  +I+ GE+AA+HL ELEP ++  Y++LS
Sbjct: 699 GQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLS 758

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N YA  G+W +   +R  MK + ++K    SWIE+ N VH F   DR HP ++ IY+ LS
Sbjct: 759 NAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLS 818

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L  +L + G+      + H+ ++E+K  +   HSEKLA+A+ L+  P  + P+R++KN+
Sbjct: 819 ELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLMTLPPCI-PLRVIKNL 877

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH +MK  S++  R I+LRD  RFHHF  G+CSC D W
Sbjct: 878 RVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 251/506 (49%), Gaps = 46/506 (9%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA-----RDLFDKMPLRDIISWNAL 96
           A RL S M      P T ++ + +L    K GKLF         ++ +    +    NAL
Sbjct: 128 AFRLYSQMHWTAVIP-TPYVLSSVLSACTK-GKLFAQGRMIHAQVYKQAFCSETFVGNAL 185

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           ++ +   GS +    +F  M   D V++NT I+G A  G    ALQ+F  MQ     P  
Sbjct: 186 IALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC 245

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
            T  S L ACA + DL++GKQ+H  ++   +  +     +L D+Y K G+I+ A  +F+ 
Sbjct: 246 VTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNL 305

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI--- 273
            +  N+V WNLM+  Y +     K  ++F +MQ  G++P++ T   IL  C  TG+I   
Sbjct: 306 GDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG 365

Query: 274 --------------------------------DDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                           D A ++  +++++D V WT+MI GY Q+
Sbjct: 366 EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQH 425

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
              E+AL  F EM    V PD   ++S  S+CA + ++  G  +H +  V G   D+ + 
Sbjct: 426 DFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIW 485

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           + L+++Y +CG +++A+++F  +  ++ ++WN +I+G+ Q+    +AL ++ K+ Q   K
Sbjct: 486 NTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK 545

Query: 422 PDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            + FTF+S +SA  + AD+ +  Q H  ++   H  T   +    +I+L G+   ++ A 
Sbjct: 546 YNVFTFISAISALANLADIKQGKQVHGRAVKTGH--TSETEVANALISLYGKCGSIEDAK 603

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKG 506
            +   +  + N + W+T+++ C+  G
Sbjct: 604 MIFSEMSLR-NEVSWNTIITSCSQHG 628



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 144/539 (26%), Positives = 233/539 (43%), Gaps = 83/539 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A++G V   R +F ++  RD VS+   ++G+A  G  +EA +++S+M      
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT Y   S L+AC +     +G+ IH ++         FV NAL  +Y   G    A  +
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  M   + V++N +ISG+ + G  +  + +F EMQL GL PD VTV+++L AC      
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G I+ A  +F++    + V W  M+V Y
Sbjct: 262 QKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAY 321

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q      +  +F +M +  + P++F+   ++ +C     +  G+ +H  ++  G + D+
Sbjct: 322 GQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDM 381

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS  LIDMY K G  D A  +  M+  R+VVSW SMI GY Q+    EALA + ++   
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + PD+    S  SAC       +G      +  V G    +  +  ++NL  R    ++
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVY-VSGYAADISIWNTLVNLYARCGRSEE 500

Query: 479 AVDLIKSLPHKPNSLIWSTL-----------------------------------LSVCA 503
           A  L + + HK + + W+ L                                   +S  A
Sbjct: 501 AFSLFREIEHK-DEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALA 559

Query: 504 MKGDIKHGE------MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
              DIK G+      +   H  E E  NA     L ++Y  CG  ED   I S M  +N
Sbjct: 560 NLADIKQGKQVHGRAVKTGHTSETEVANA-----LISLYGKCGSIEDAKMIFSEMSLRN 613



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 176/394 (44%), Gaps = 58/394 (14%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  D +  + ++    + G +  A ++F  +  +D+V W  M+ GY Q+G  ++A  L+
Sbjct: 73  GLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLY 132

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           ++M    V P  + +SSV+S+C K      G+++H +        +  V +ALI +Y   
Sbjct: 133 SQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGF 192

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  VF  M   + V++N++I+G+AQ G    AL ++D++    L+PD  T  S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 432 SAC-----------LHADLFERGQNHFDSIS---------------AVHGITPSLDH--- 462
           +AC           LH+ L + G + FD I+                 H I    D    
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMS-FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNV 311

Query: 463 --YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGE----M 513
             +  M+   G+ SD+ K+ ++   +      PN   +  +L  C   G I+ GE    +
Sbjct: 312 VLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSL 371

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           + ++ FE +   +G   +L +MY+  G  +    I   ++ ++V      SW  +   + 
Sbjct: 372 SIKNGFESDMYVSG---VLIDMYSKYGCLDKARKILEMLEKRDV-----VSWTSM---IA 420

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            +V  D          EE     K++Q+ G  P+
Sbjct: 421 GYVQHD--------FCEEALATFKEMQDCGVWPD 446



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 59/100 (59%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H  +VV G+  D L+ + LID+Y K G+   A  VF  + +R+ VSW +M++GYAQ+G 
Sbjct: 65  IHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGL 124

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             EA  LY ++    + P  +   SVLSAC    LF +G+
Sbjct: 125 GKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGR 164



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 49/235 (20%)

Query: 8   RQAIDTLYSRGQAATEE---AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           +QA+      GQA  +     +   +     + D++  K++     +     + T + N 
Sbjct: 530 KQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRA-VKTGHTSETEVANA 588

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K G +  A+ +F +M LR+ +SWN ++++ ++ G     R L            
Sbjct: 589 LISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITSCSQHG-----RGL------------ 631

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         EAL +F +M+++  +P D T +  L AC+ +  +  G      +  
Sbjct: 632 --------------EALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSM-- 675

Query: 185 GNLGGNVFVRNALTDMYA-------KGGEIDKARWLFDRMN-NRNLVSWNLMISG 231
                NV+  N + D YA       + G++D+AR   D M    N + W  ++S 
Sbjct: 676 ----SNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSA 726


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/638 (37%), Positives = 364/638 (57%), Gaps = 37/638 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N+L++ + +SG V     LFD++  RD VS+N+ I+G    GFS  AL+ F +M   R  
Sbjct: 592  NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG 651

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T V+++ ACA +  L  G+ +HG+ V       V   N L DMY+K G ++ A   
Sbjct: 652  VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
            F++M  + +VSW  +I+ Y++ G     I LF EM+  G++PD  +++++L AC      
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 269  ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                          + G +++A  +F  I  KD V W TMI GY
Sbjct: 772  DKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY 831

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++N    +AL LF EM  E  RPD  +++ ++ +C  LA+L  G+ +HG  +  G   +L
Sbjct: 832  SKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSEL 890

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             V++ALIDMY KCG    A  +F+M+P +++++W  MI+G   +G   EA+A + K+   
Sbjct: 891  HVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIA 950

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +KPD  TF S+L AC H+ L   G   F+S+ +   + P L+HYACM++LL R+ ++ K
Sbjct: 951  GIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSK 1010

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A +LI+++P KP++ IW  LL  C +  D++  E  A H+FELEP NAG Y++L+N+YA 
Sbjct: 1011 AYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAE 1070

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              +WE+V  +R  +  + +KK    SWIE+  K   FVS D  HP+ + I+  L+ L  K
Sbjct: 1071 AEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIK 1130

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++  G SP  +  L +  + EK  ++C HSEKLA+A+ ++  P G T IR+ KN+RVC D
Sbjct: 1131 MKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRT-IRVAKNLRVCDD 1189

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH   KF S    R IILRDSNRFHHF  G CSC+D W
Sbjct: 1190 CHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 252/507 (49%), Gaps = 44/507 (8%)

Query: 37  NDVELAKRLQ-SHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNA 95
           N VEL +  Q S +DLN Y   ++ L     H   + GK+ ++    + +P+  ++    
Sbjct: 436 NAVELLRMSQKSELDLNAY---SSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAK- 491

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVS-YNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           L+  +   G++++ R +FD +   + V  +N  ++ +A  G  RE++ +F +MQK     
Sbjct: 492 LVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITG 551

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT    L   A L  +   K+IHG +     G    V N+L   Y K GE+D A  LF
Sbjct: 552 NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLF 611

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------ 268
           D + +R++VSWN MISG + NG     ++ F +M +L +  D  T+ N + AC       
Sbjct: 612 DELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLS 671

Query: 269 -----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + G ++DA + F  + +K  V WT++I  Y 
Sbjct: 672 LGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYV 731

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           + G  +DA+ LF EM S+ V PD +S++SV+ +CA   SL  G+ VH       +   L 
Sbjct: 732 REGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLP 791

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           VS+AL+DMY KCG  ++A+ VF+ +P +++VSWN+MI GY++N    EAL L+ ++ +E+
Sbjct: 792 VSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES 851

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            +PD  T   +L AC      E G+     I   +G +  L     +I++  +   +  A
Sbjct: 852 -RPDGITMACLLPACGSLAALEIGRGIHGCI-LRNGYSSELHVANALIDMYVKCGSLVHA 909

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             L   +P K + + W+ ++S C M G
Sbjct: 910 RLLFDMIPEK-DLITWTVMISGCGMHG 935



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 197/411 (47%), Gaps = 40/411 (9%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           NT I  F   G  R A+++    QK   +   Y+  S L  CA+   L+ GK +H  I  
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYS--SILQLCAEHKCLQEGKMVHSVISS 479

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCID 243
             +     +   L  MY   G + + R +FD + + N V  WNLM+S Y K G  ++ I 
Sbjct: 480 NGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIY 539

Query: 244 LFQEMQLLGLNPDEVTVSNIL---------GAC--------------------------F 268
           LF++MQ LG+  +  T S IL         G C                          F
Sbjct: 540 LFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYF 599

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           ++G +D A +LF  + ++D V W +MI G   NG    AL  F +ML   V  D  ++ +
Sbjct: 600 KSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVN 659

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
            V++CA + SL  G+ +HG+ V      +++ ++ L+DMY KCG  +DA   F  M  + 
Sbjct: 660 SVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKT 719

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           VVSW S+I  Y + G   +A+ L+ ++  + + PD ++  SVL AC   +  ++G++  +
Sbjct: 720 VVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHN 779

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            I   + +   L     ++++  +   +++A  +   +P K + + W+T++
Sbjct: 780 YIRK-NNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMI 828



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 185/384 (48%), Gaps = 44/384 (11%)

Query: 88   RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            R+++  N LL  +++ G++ D    F+KM  +  VS+ + IA +  +G   +A+++F  M
Sbjct: 687  REVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 148  QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +     P  Y+  S L+ACA    L +G+ +H  I   N+   + V NAL DMYAK G +
Sbjct: 747  ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSM 806

Query: 208  DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            ++A  +F ++  +++VSWN MI GY KN  P + + LF EMQ     PD +T++ +L AC
Sbjct: 807  EEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPAC 865

Query: 268  -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                                + G +  A  LF +I EKD + WT
Sbjct: 866  GSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWT 925

Query: 293  TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV- 351
             MI G   +G   +A+  F +M    ++PD+ + +S++ +C+    L  G       +  
Sbjct: 926  VMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISE 985

Query: 352  LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALA 410
              ++  L   + ++D+  + G    A+ +   MP + +   W +++ G  +   D+E   
Sbjct: 986  CNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCG-CRIHHDVE--- 1041

Query: 411  LYDKLLQE--NLKPDSFTFVSVLS 432
            L +K+ +    L+PD+  +  +L+
Sbjct: 1042 LAEKVAEHVFELEPDNAGYYVLLA 1065



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 10/133 (7%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH--NRLLHFYAKSGKLFYARDLFDKMP 86
           L+  C  +  +E+ + +   +  N Y   ++ LH  N L+  Y K G L +AR LFD +P
Sbjct: 861 LLPACGSLAALEIGRGIHGCILRNGY---SSELHVANALIDMYVKCGSLVHARLLFDMIP 917

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSREALQ 142
            +D+I+W  ++S     G   +  A F KM I     D +++ + +   ++ G   E   
Sbjct: 918 EKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWG 977

Query: 143 VFSRMQKD-RFEP 154
            F+ M  +   EP
Sbjct: 978 FFNSMISECNMEP 990


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/672 (35%), Positives = 378/672 (56%), Gaps = 42/672 (6%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LL   A    L   R +  ++  R +    ++  AL + +A+     D R +FD+MP RD
Sbjct: 231 LLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARD 290

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRGKQIH 179
            V++N  +AG+A  G +  A+ +  RMQ++  E P   T VS L ACA    L   +++H
Sbjct: 291 RVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVH 350

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              V G     V V  A+ D+Y K G +D AR +FD M +RN VSWN MI GY +NG   
Sbjct: 351 AFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDAT 410

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTG---------------------------- 271
           + + LF+ M   G++  +V+V   L AC + G                            
Sbjct: 411 EALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALI 470

Query: 272 -------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                  R D A ++F  +  K  V W  MI+G TQNG  EDA+ LF+ M  E+V+PD F
Sbjct: 471 TMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSF 530

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ S++ + A ++     + +HG ++ L +D D+ V +ALIDMY KCG    A ++FN  
Sbjct: 531 TLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSA 590

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R+V++WN+MI+GY  +G    A+ L++++      P+  TF+SVLSAC HA L + GQ
Sbjct: 591 RDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            +F S+   +G+ P ++HY  M++LLGR+  + +A   I+ +P +P   ++  +L  C +
Sbjct: 651 EYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKL 710

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             +++  E +A+ +FELEP     +++L+N+YA    W+DVA +R++M+ K ++K   +S
Sbjct: 711 HKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWS 770

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
            +++ N++H F S    H + + IY  L+KLI++++  G+ P+T  + HD +++ K + +
Sbjct: 771 IVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLL 829

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
             HSEKLA+AY LI+   G T I+I KN+RVC DCH   K  S + GR II+RD  RFHH
Sbjct: 830 NTHSEKLAIAYGLIRTAPGTT-IQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHH 888

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 889 FKDGKCSCGDYW 900


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/674 (35%), Positives = 372/674 (55%), Gaps = 67/674 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +WN LL+ + +S  + D   LFD+MP R+++S+ T I G+A      EA+++F R+ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  E   +   + L           G  IH  I       N FV  AL D Y+  G +D
Sbjct: 132 REGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVD 191

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD +  +++VSW  M++ + +N   K+ + LF +M+++G  P+  T +++  AC 
Sbjct: 192 VAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACL 251

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              ++G IDDA R F  I +KD + W+ 
Sbjct: 252 GLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSF 311

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y Q+ + ++A+ +F +M    V P++F+ +SV+ +CA +  L  G  +H   + +G
Sbjct: 312 MIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG 371

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+ VS+AL+D+Y KCG  +++  +F   P RN V+WN++I G+ Q G   +AL L+ 
Sbjct: 372 LHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFL 431

Query: 414 KLLQE-------------------------------NLKPDSFTFVSVLSACLHADLFER 442
            +L+                                 +KPD  TFV VLSAC +A L ++
Sbjct: 432 NMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQ 491

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           GQ +F S+   HGI P ++HY CM+ LLGR   +DKAV LI  +P +P+ ++W  LL  C
Sbjct: 492 GQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGAC 551

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  DI+ G ++A+ + E+EP +   +++LSNMYA   RW++VAS+R +MK K VKK   
Sbjct: 552 VIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPG 611

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SWIE    VH F   D +HPE  +I   L  L  K ++AG+ PN  +VL D ++EEK +
Sbjct: 612 LSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKER 671

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSE+LAL++ +I+ P G +PIRIMKN+R+C DCH  +K  S ++ R I++RD NRF
Sbjct: 672 LLWVHSERLALSFGIIRTPSG-SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRF 730

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G CSC D W
Sbjct: 731 HHFQEGLCSCGDYW 744



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 206/434 (47%), Gaps = 46/434 (10%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY---THVSALNACAQLLDLRRGKQI 178
           V  N  +  F+ +GFS ++ ++          P+++    + +AL  C Q  +  RGK +
Sbjct: 2   VCRNNFLIQFSRRGFSVQSAKLTQEF-VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGL 60

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H +I+      ++F  N L +MY K   +  A  LFD M  RN +S+  +I GY ++ + 
Sbjct: 61  HCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRF 120

Query: 239 KKCIDLFQEMQLLG--LNPDEVT------VSNILG-------ACF--------------- 268
            + I+LF  +   G  LNP   T      VS   G       AC                
Sbjct: 121 LEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTAL 180

Query: 269 -----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  GR+D A  +F  I  KD V WT M+  + +N   ++AL LF++M     +P+ 
Sbjct: 181 IDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNN 240

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F+ +SV  +C  L +   G+ VHG A+    + DL V  AL+D+Y K G  DDA   F  
Sbjct: 241 FTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEE 300

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +P ++V+ W+ MI  YAQ+ Q  EA+ ++ ++ Q  + P+ FTF SVL AC   +    G
Sbjct: 301 IPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLG 360

Query: 444 -QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            Q H   I    G+   +     ++++  +   ++ +++L    PH+ N + W+T++   
Sbjct: 361 NQIHCHVIKI--GLHSDVFVSNALMDVYAKCGRMENSMELFAESPHR-NDVTWNTVIVGH 417

Query: 503 AMKGDIKHGEMAAR 516
              GD   GE A R
Sbjct: 418 VQLGD---GEKALR 428


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 391/708 (55%), Gaps = 65/708 (9%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  CT +  ++L   + S +    +  +T     RL+  Y+K G L  AR LFD  
Sbjct: 28  YDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHR 84

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
                    A                        +S   NT +  +AN G S EA+ ++ 
Sbjct: 85  HHHHHGHTQA-----------------------PNSFLCNTMLRAYANAGRSYEAIDLYI 121

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            MQ+      ++T+   L  CA  L    G+ +HG++V    G ++FV  AL DMYAK G
Sbjct: 122 YMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCG 181

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV----- 260
           EI  A  +FDRM  R++V W  MI+ Y +  +P K + LF++MQ  G   DE+T      
Sbjct: 182 EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVAS 241

Query: 261 ------------------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                                         ++I+G   + G ++ A  +F  ++E++ + 
Sbjct: 242 AVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGIS 301

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W +M+ GYTQNG+  DAL LFN+M + +  P+  +   +VS+C+ L S + G+ +H   +
Sbjct: 302 WNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVI 361

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNGQDLEA 408
              +D D  + +A++DMY KCG  D A  +FN   +  R+V SWN +I+GY  +G   EA
Sbjct: 362 SSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEA 421

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L+ ++  E ++P+  TF S+LSAC HA L + G+  F  ++ +  + P + HYACM++
Sbjct: 422 LELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKL-SVRPEMKHYACMVD 480

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +LGR+  +++A  LIK +P +P+  +W  LL  C + G+ + GE+AA +LF+LEP + G 
Sbjct: 481 MLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGY 540

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y+++SN+YAA  +W++V  +R +MKS+ +KK AA+S IE   +VH F + D++ P    +
Sbjct: 541 YVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREV 600

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y ++  L  +++  G+ P+   VLHD + E+K   + YHSEKLA+A+ ++K   G+ PI+
Sbjct: 601 YRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGM-PIQ 659

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVC DCH   KF S I GR II+RD NRFHHF GG CSC D W
Sbjct: 660 VTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 707


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/638 (36%), Positives = 368/638 (57%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+ A++ SG V   R +FD++  +D VS+   IA +A      EAL+ FS+M+   F+
Sbjct: 85  TALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFK 144

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T    L AC  L +   GK +H  ++  N   +++V   L ++Y + G+ D A   
Sbjct: 145 PNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRA 204

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------------- 259
           F  M   +++ W+ MIS + ++GQ +K +++F +M+   + P++ T              
Sbjct: 205 FGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESL 264

Query: 260 --------------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                               VSN L AC+ + G I+ +  LF  + ++++V W T+IV Y
Sbjct: 265 DLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSY 324

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  E AL LF+ ML   V+  + + SS++ +CA LA+L  G  VH          D+
Sbjct: 325 VQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDV 384

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V +ALIDMY KCG   DA  +F+M+  R+ VSWN++I GY+ +G  +EA+ +++ + + 
Sbjct: 385 AVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKET 444

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             KPD  TFV VLSAC +    + G+ +F S+   +GI P ++HY CM+ L+GRS ++D+
Sbjct: 445 KCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQ 504

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           AV  I+ +P +P+ +IW  LL  C +  D++ G ++A+ + ELEP +   +++LSN+YA 
Sbjct: 505 AVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYAR 564

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RW +VA +R  MK K VKK    SWIE    VH F   D +H + ++I   L  L  K
Sbjct: 565 ARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMK 624

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++AG+SP    VL D +++EK + +  HSE+LALA+ L++ P G  PIRI+KN+R+C D
Sbjct: 625 TRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAG-CPIRIIKNLRICVD 683

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S I+GR II+RD NRFHHF  G+CSC D W
Sbjct: 684 CHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 226/483 (46%), Gaps = 71/483 (14%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FD+MP R++VS+ T I G+A      EA ++F+R+  +  E   +   + L     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              G+ +HG ++    G N F+  AL D Y+  G +  AR +FD ++++++VSW  MI+ 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI------------- 273
           Y +N    + ++ F +M++ G  P+  T + +L AC     F  G+              
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 274 -----------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                            DDA R F  + + D + W+ MI  + Q+G+ E AL +F +M  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             V P++F+ SSV+ + A + SL   + +HG A+  G+  D+ VS+AL+  Y KCG  + 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           +  +F  +  RN VSWN++I  Y Q G    AL+L+  +L+  ++    T+ S+L AC  
Sbjct: 302 SMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACAT 361

Query: 437 ADLFERG-QNHFDSISAVHGITPS-----LDHYA-------------------------- 464
               E G Q H  +   ++G   +     +D YA                          
Sbjct: 362 LAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAI 421

Query: 465 -CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM---AARHLFE 520
            C  ++ G   +  K  +L+K    KP+ L +  +LS C+  G +  G+    + +  + 
Sbjct: 422 ICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYG 481

Query: 521 LEP 523
           +EP
Sbjct: 482 IEP 484



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 163/355 (45%), Gaps = 52/355 (14%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E ++Q+ +   + N+   A  L++ + L  ++   T +H  +L       K  Y RDL+ 
Sbjct: 133 EFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKT-VHCSVL-------KTNYERDLYV 184

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            +          LL  + R G   D    F  MP  D + ++  I+ FA  G S +AL++
Sbjct: 185 GV---------GLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEI 235

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F +M++    P  +T  S L A A +  L   K IHG  +   L  +VFV NAL   YAK
Sbjct: 236 FCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAK 295

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I+++  LF+ +++RN VSWN +I  Y++ G  ++ + LF  M    +   EVT S+I
Sbjct: 296 CGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSI 355

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L AC                                    + G I DA  +F ++  +D 
Sbjct: 356 LRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDK 415

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           V W  +I GY+ +G   +A+ +FN M     +PD+ +   V+S+C+    L  G+
Sbjct: 416 VSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGK 470



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 111/197 (56%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A+ G ++    LF+ +  R+ VS+NT I  +   G    AL +FS M 
Sbjct: 282 DVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNML 341

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + + + T+ T+ S L ACA L  L  G Q+H        G +V V NAL DMYAK G I 
Sbjct: 342 RYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIK 401

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR++FD ++ R+ VSWN +I GY  +G   + I +F  M+     PDE+T   +L AC 
Sbjct: 402 DARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACS 461

Query: 269 QTGRIDDAGRLFHVIKE 285
            TGR+D+  + F  +K+
Sbjct: 462 NTGRLDEGKQYFTSMKQ 478



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 57/90 (63%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+   NAL+  +A+ GS++D R +FD + +RD VS+N  I G++  G   EA+++F+ M
Sbjct: 382 QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLM 441

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           ++ + +P + T V  L+AC+    L  GKQ
Sbjct: 442 KETKCKPDELTFVGVLSACSNTGRLDEGKQ 471


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/699 (34%), Positives = 393/699 (56%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  + + G +  A  LF ++    I   N++L  + ++  V     LFD MP RD VS+
Sbjct: 179 LVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSW 238

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++  +  G  REAL +   MQ         T+ S+L ACA+L  LR GKQ+H +++ 
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +AL ++YAK G   +A+ +F+ +++RN V+W ++I+G+L++G   + ++L
Sbjct: 299 NLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVEL 358

Query: 245 FQEMQLLGLNPDEVTVSNILGA----------------CFQTGRID-------------- 274
           F +M+   +  D+  ++ ++                  C ++G+I               
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 275 -----DAGRLFHVIKEKDNVCWTTMIVG-------------------------------Y 298
                 A  +F  + EKD V WT+MI                                 Y
Sbjct: 419 CDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAY 478

Query: 299 TQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L ++N MLSE DVRPD  +  ++   CA L +   G  + G+ V +G+  D
Sbjct: 479 IQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILD 538

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V++A+I MY KCG   +A  VF+ +  +++VSWN+MI GY+Q+G   +A+ ++D +L+
Sbjct: 539 TSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILK 598

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              KPD  ++V+VLS C H+ L + G+++FD +  VH I+P L+H++CM++LLGR+  + 
Sbjct: 599 RGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLT 658

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A DLI  +P KP + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++++ +YA
Sbjct: 659 EAKDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYA 718

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+ +D A IR  M+ K +KK   YSW+E++NKVH F ++D +HP+   I ++L +L++
Sbjct: 719 DAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELME 778

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+   G+      V  D+   E      +HSEKLA+A+ L+  P    PI IMKN+R+CG
Sbjct: 779 KIARLGY------VRTDSPRSE-----IHHSEKLAVAFGLMSLP-AWMPIHIMKNLRICG 826

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S + GR  ++RD+ RFHHF GG+CSC D W
Sbjct: 827 DCHTVIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/483 (25%), Positives = 217/483 (44%), Gaps = 102/483 (21%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLF-DKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           +  FL N LLH Y   G L  AR L    +   ++I+ N +L+ + + G + D   LF +
Sbjct: 37  SAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGR 96

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRR 174
           MP RD  S+NT ++G+        +L+ F  M +     P  +T   A+ +C  L +   
Sbjct: 97  MPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSL 156

Query: 175 GKQIHG-------------------------------KIVVGNLGGNVFVRNALTDMYAK 203
             Q+ G                               ++ V      +F RN++   Y K
Sbjct: 157 ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVK 216

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
              +D A  LFD M  R++VSWN+M+S   ++G+ ++ +D+  +MQ  G+  D  T ++ 
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L AC                                    + G   +A  +F+ + +++N
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNN 336

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT +I G+ Q+G   +++ LFN+M +E +  D+F++++++S C     L  G+ +H  
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSL 396

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDA--------------WT--------------- 379
            +  G    ++VS++LI MY KC     A              WT               
Sbjct: 397 CLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKA 456

Query: 380 --VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLH 436
              F+ M T+NV++WN+M+  Y Q+G + + L +Y+ +L E +++PD  T+V++   C  
Sbjct: 457 REFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGC-- 514

Query: 437 ADL 439
           ADL
Sbjct: 515 ADL 517



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 162/315 (51%), Gaps = 10/315 (3%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A   L+  C    D+ L ++L S + L   +     + N L+  YAK   L  A  +F  
Sbjct: 373 ALATLISGCCSRMDLCLGRQLHS-LCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRF 431

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           M  +DI+SW ++++AH++ G++   R  FD M  ++ +++N  +  +   G   + L+++
Sbjct: 432 MNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMY 491

Query: 145 SRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           + M  ++   P   T+V+    CA L   + G QI G+ V   L  +  V NA+  MY+K
Sbjct: 492 NVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSK 551

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I +AR +FD +N +++VSWN MI+GY ++G  K+ I++F ++   G  PD ++   +
Sbjct: 552 CGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAV 611

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSED 318
           L  C  +G + +    F ++K   N+      ++ M+    + G   +A  L +EM    
Sbjct: 612 LSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEM---P 668

Query: 319 VRPDKFSISSVVSSC 333
           ++P      +++S+C
Sbjct: 669 MKPTAEVWGALLSAC 683



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 196/432 (45%), Gaps = 83/432 (19%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDR 216
           T + A  +C  L D RR       +++ ++   NV   N + + Y K G +  A  LF R
Sbjct: 44  TLLHAYLSCGALPDARR-------LLLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGR 96

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM---------------------------- 248
           M  R++ SWN ++SGY ++ Q    ++ F  M                            
Sbjct: 97  MPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSL 156

Query: 249 --QLLGL-----NPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY-- 298
             QLLG+     + D+  V+  L   F + G +D A RLF  IKE    C  +M+VGY  
Sbjct: 157 ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVK 216

Query: 299 -----------------------------TQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
                                        +Q+G+  +AL +  +M S+ VR D  + +S 
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +++CA+L+SL  G+ +H + +      D  V+SAL+++Y KCG   +A  VFN +  RN 
Sbjct: 277 LTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNN 336

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQNHFD 448
           V+W  +I G+ Q+G   E++ L++++  E +  D F   +++S C    DL    Q H  
Sbjct: 337 VAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH-- 394

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S+    G   ++     +I++  +  ++  A  + + +  K + + W+++++  +  G+I
Sbjct: 395 SLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEK-DIVSWTSMITAHSQVGNI 453

Query: 509 KHGEMAARHLFE 520
                 AR  F+
Sbjct: 454 AK----AREFFD 461



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 44/270 (16%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG---------VTD 375
           + +  + SC    +L   + +HG+ V +G+   + + + L+  Y  CG         +TD
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 376 -----------------------DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
                                  DA  +F  MP R+V SWN++++GY Q+ Q L +L  +
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 413 DKLLQE-NLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLL 470
             + +  +  P++FTF   + +C    L ER        +    G     D  A ++++ 
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSC--GALGERSLALQLLGMVQKFGSQDDSDVAAALVDMF 183

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK-HGEMAARHLFELEP-INAGP 528
            R   VD A  L   +  +P     +++L      G +K +G   A  LF+  P  +   
Sbjct: 184 VRCGTVDLASRLFVRIK-EPTIFCRNSMLV-----GYVKTYGVDHALELFDSMPERDVVS 237

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           + M+ +  +  GR  +   +   M+SK V+
Sbjct: 238 WNMMVSALSQSGRVREALDMVVDMQSKGVR 267


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/638 (36%), Positives = 366/638 (57%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+ A+A  GSV   R  FD +  +D VS+   +A +A     +++LQ+F+ M+   F 
Sbjct: 80  TALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFN 139

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T    L AC  L     GK +HG ++      +++V   L D+Y K G+ +    +
Sbjct: 140 PNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRV 199

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F+ M   +++ W+ MIS Y ++ Q ++ ++LF +M+   + P++ T +++L +C      
Sbjct: 200 FEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENL 259

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + GR+D++ +LF  +  ++ V W TMIVGY
Sbjct: 260 QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGY 319

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q+G  + AL L+  ML   V+  + + SSV+ +CA LA++  G  +H  ++    D D+
Sbjct: 320 VQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDV 379

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V +ALIDMY KCG   +A  VF+M+  R+ +SWN+MI+GY+ +G   EAL  +  + + 
Sbjct: 380 VVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQET 439

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              P+  TFVS+LSAC +A L + GQN+F S+   +GI P ++HY CM+ LLGRS  +DK
Sbjct: 440 ECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDK 499

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           AV LI+ +P +PN  +W  LL  C +  D+  G M+A+ + +++P +   +++LSN+YA 
Sbjct: 500 AVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYAR 559

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RW  VAS+R  MK+K VKK    SWIE    VH F   D +HP+ ++I   L  L  K
Sbjct: 560 TRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMK 619

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++AG+ P+   VL D +++EK + +  HSE+LALA+ LI+ P     IRI+KN+R+C D
Sbjct: 620 TEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGLIRTP-SRGHIRILKNLRICTD 678

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 679 CHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 39/445 (8%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R++VS+ T I G+       E + +FSR+ ++  E   +   + L     +      
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             +H  I       N FV  AL D YA  G ++ AR  FD +  +++VSW  M++ Y +N
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------------ 272
            + +  + LF EM+++G NP+  T + +L AC     F  G+                  
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 273 ------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                        +D  R+F  + + D + W+ MI  Y Q+ +  +A+ LF +M    V 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P++F+ +SV+ SCA + +L  G+ VH   + +G+D ++ VS+AL+D+Y KCG  D++  +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +P RN V+WN+MI GY Q+G   +AL+LY  +L+  ++    T+ SVL AC      
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 441 ERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           E G Q H  S+  ++     + +   +I++  +   +  A  L+  +  + + + W+ ++
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGN--ALIDMYAKCGSIKNA-RLVFDMLSERDEISWNAMI 417

Query: 500 SVCAMKGDIKHGEMAARHLFELEPI 524
           S  +M G +     A + + E E +
Sbjct: 418 SGYSMHGLVGEALKAFQMMQETECV 442


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/640 (37%), Positives = 357/640 (55%), Gaps = 67/640 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
             L+  +A+   + +   LF+  P  R+ V +   + G++  G   +A++ F  M+ +  
Sbjct: 177 TGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGI 236

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           E   +T  S L AC  +     G Q+HG IV    G NVFV +AL DMY+K G++  AR 
Sbjct: 237 ECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARR 296

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
           + + M   + VSWN MI G ++ G  ++ + LF+ M L  +  DE T  ++L  CF    
Sbjct: 297 MLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN-CFSFVM 355

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G  D A  +F  + +KD + WT+++ 
Sbjct: 356 DMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVT 415

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G   NG  E+AL LF EM    + PD+  I++V+S+CA+L  L  G+ VH   +  G+  
Sbjct: 416 GCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGS 475

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            L V ++L+ MY KCG  +DA  VF+ M  ++V++W ++I GYAQNG+  +         
Sbjct: 476 SLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD--------- 526

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
                              HA L E G+++F S+  V+GI P  +HYACMI+LLGRS  +
Sbjct: 527 -------------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKL 567

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A +L+  +  +P++ +W  LL+ C + G+++ GE AA +LFELEP NA PY++LSN+Y
Sbjct: 568 MEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLY 627

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           +A G+WE+ A  R  MK + V K    SWIE+ +KVH+F+SEDR+HP T  IY ++ +++
Sbjct: 628 SAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIM 687

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
             ++EAG+ P+    LHD  EE K   + YHSEKLA+A+ L+  P G  PIRI KN+R+C
Sbjct: 688 ILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPG-APIRIFKNLRIC 746

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH  MK+ S +  R +ILRDSN FHHF  G CSC D W
Sbjct: 747 GDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 154/510 (30%), Positives = 254/510 (49%), Gaps = 47/510 (9%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L   +K G++  AR LFD MP RD  SWN ++ A+A SG + + R LF + PIR  +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++++ I+G+   G   EAL++F  MQ +   P  +T  S L  C+  + L +GKQIH   
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKC 241
           +      N FV   L DMYAK   I +A +LF+   + RN V W  M++GY +NG   K 
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGAC---------------------------------- 267
           I+ F++M+  G+  ++ T  +IL AC                                  
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDM 284

Query: 268 -FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G + +A R+   ++  D V W +MIVG  + G  E+AL LF  M    ++ D+F+ 
Sbjct: 285 YSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTY 344

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            SV++  + +  + +   VH   V  G +   LV++AL+DMY K G  D A+ VF  M  
Sbjct: 345 PSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTD 404

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QN 445
           ++V+SW S++ G   NG   EAL L+ ++    + PD     +VLSAC    + E G Q 
Sbjct: 405 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQV 464

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           H + + +  G + S+D+   ++++  +   ++ A  +  S+  + + + W+ L+   A  
Sbjct: 465 HANFLKSGLGSSLSVDN--SLVSMYAKCGCIEDANKVFDSMEIQ-DVITWTALIVGYAQN 521

Query: 506 GD-------IKHGEMAARHLFELEPINAGP 528
           G        ++HG    + + E+  I  GP
Sbjct: 522 GRGRDHAGLVEHGRSYFQSMEEVYGIKPGP 551



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 149/337 (44%), Gaps = 67/337 (19%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           HK  +    +   G    +  +  ++  C  ++      ++   +  + +  N  F+ + 
Sbjct: 222 HKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANV-FVGSA 280

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y+K G L  AR + + M + D +SWN++                            
Sbjct: 281 LVDMYSKCGDLSNARRMLETMEVDDPVSWNSM---------------------------- 312

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I G   +G   EAL +F  M     +  ++T+ S LN  + ++D+R    +H  IV 
Sbjct: 313 ---IVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVK 369

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                   V NAL DMYAK G  D A  +F++M +++++SW  +++G + NG  ++ + L
Sbjct: 370 TGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRL 429

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQ----------------------------------- 269
           F EM+++G++PD++ ++ +L AC +                                   
Sbjct: 430 FCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAK 489

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
            G I+DA ++F  ++ +D + WT +IVGY QNG+  D
Sbjct: 490 CGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD 526



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 41/202 (20%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEP---NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           C  +  +E  K++ +    NF +    ++  + N L+  YAK G +  A  +FD M ++D
Sbjct: 452 CAELTVLEFGKQVHA----NFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQD 507

Query: 90  IISWNALLSAHARSGS-------VQDLRALFDKMPIRDSVS-----YNTAIAGFANKGFS 137
           +I+W AL+  +A++G        V+  R+ F  M     +      Y   I      G  
Sbjct: 508 VITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKL 567

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV---- 193
            EA ++ ++M     +P      + L AC          ++HG + +G    N       
Sbjct: 568 MEAKELLNQMA---VQPDATVWKALLAAC----------RVHGNVELGERAANNLFELEP 614

Query: 194 RNA-----LTDMYAKGGEIDKA 210
           +NA     L+++Y+  G+ ++A
Sbjct: 615 KNAVPYVLLSNLYSAAGKWEEA 636


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/687 (35%), Positives = 401/687 (58%), Gaps = 10/687 (1%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  A +    +L+  C+        +++  ++     E N + + N L+  Y+++GKL  
Sbjct: 84  GAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVS-MCNSLIVMYSRNGKLEL 142

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAIAGFAN 133
           +R +F+ M  R++ SWN++LS++ + G V D   L D+M I     D V++N+ ++G+A+
Sbjct: 143 SRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYAS 202

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           KG S++A+ V  RMQ    +P+  +  S L A A+   L+ GK IHG I+   L  +V+V
Sbjct: 203 KGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYV 262

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
              L DMY K G +  AR +FD M+ +N+V+WN ++SG       K    L   M+  G+
Sbjct: 263 ETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGI 322

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDALI 309
            PD +T +++       G+ + A  +   +KEK    + V WT +  G ++NG   +AL 
Sbjct: 323 KPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALK 382

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           +F +M  E V P+  ++S+++     L+ L+ G+ VHG  +   +  D  V++AL+DMY 
Sbjct: 383 VFIKMQEEGVGPNAATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYG 442

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           K G    A  +F  +  +++ SWN M+ GYA  G+  E +A +  +L+  ++PD+ TF S
Sbjct: 443 KSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTS 502

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLS C ++ L + G  +FD + + +GI P+++H +CM++LLGRS  +D+A D I+++  K
Sbjct: 503 VLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLK 562

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P++ IW   LS C +  D++  E+A + L  LEP N+  Y+M+ N+Y+   RWEDV  IR
Sbjct: 563 PDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIR 622

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
           + M++  V+    +SWI+ID  VH F +E +THP+   IY EL KL+ +++++G+ P+T 
Sbjct: 623 NLMRNNRVRVQDLWSWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTS 682

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            +  D  + EK K +  H+EKLA+ Y LIKK  G+ PIR++KN  +C D H   K+ S +
Sbjct: 683 CIHQDISDSEKEKLLMGHTEKLAMTYGLIKKK-GLAPIRVVKNTNICSDSHTVAKYMSVL 741

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R I+L++  R HHF  G CSC D+W
Sbjct: 742 RNREIVLQEGARVHHFRDGKCSCNDSW 768



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 214/468 (45%), Gaps = 108/468 (23%)

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           + FY +   L +A  LFD+MP RD ++WN ++  + RSG+ +                  
Sbjct: 30  MGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWE------------------ 71

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                        +A+++F  MQ    +  D T V  L  C+       G+QIHG ++  
Sbjct: 72  -------------KAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRL 118

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  NV + N+L  MY++ G+++ +R +F+ M +RNL SWN ++S Y K G     I L 
Sbjct: 119 GLESNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLL 178

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
            EM++ GL PD VT                               W +++ GY   G  +
Sbjct: 179 DEMEICGLKPDIVT-------------------------------WNSLLSGYASKGLSK 207

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           DA+ +   M    ++P   SISS++ + A+   L  G+ +HG  +   +  D+ V + LI
Sbjct: 208 DAIAVLKRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLI 267

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING--YAQNGQDLEALALYDKLLQENLKPD 423
           DMY K G    A  VF+MM  +N+V+WNS+++G  YA   +D EAL +  ++ +E +KPD
Sbjct: 268 DMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMI--RMEKEGIKPD 325

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           + T+ S+ S                              YA     LG+    +KA+D+I
Sbjct: 326 AITWNSLASG-----------------------------YAT----LGKP---EKALDVI 349

Query: 484 KSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
             +  K   PN + W+ + S C+  G+ ++   A +   +++    GP
Sbjct: 350 GKMKEKGVAPNVVSWTAIFSGCSKNGNFRN---ALKVFIKMQEEGVGP 394



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 96/180 (53%)

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
           N D   VS  +G   +   +  A +LF  + ++D++ W  +++   ++G  E A+ LF E
Sbjct: 20  NSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSGNWEKAVELFRE 79

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M     +    ++  ++  C+       G+ +HG  + LG++ ++ + ++LI MY + G 
Sbjct: 80  MQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCNSLIVMYSRNGK 139

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + +  VFN M  RN+ SWNS+++ Y + G   +A+ L D++    LKPD  T+ S+LS 
Sbjct: 140 LELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSG 199


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/591 (39%), Positives = 354/591 (59%), Gaps = 38/591 (6%)

Query: 108 DLRALFDKMPIRDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +L  LF+K   + +V S+N+ IA  A  G S EAL+ FS M+K   +P   T   A+ +C
Sbjct: 27  NLTTLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSC 86

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           + LLDL  G+Q H + ++     ++FV +AL DMY+K GE+  AR LFD +++RN+VSW 
Sbjct: 87  SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWT 146

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
            MI+GY++N    + +                                   R+F  + E+
Sbjct: 147 SMITGYVQNDDAHRAL-----------------------------------RVFDGMAER 171

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVV 345
           D + W ++I  Y QNG   +++ +F+ M+ + ++  +  ++S+V+ +CA   S   G+ +
Sbjct: 172 DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCI 231

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H + + +G++ ++ V +++IDMYCKCG  + A   F+ M  +NV SW++M+ GY  +G  
Sbjct: 232 HDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA 291

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EAL ++ ++    +KP+  TFVSVL+AC HA L E G + F ++S    + P ++HY C
Sbjct: 292 KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGC 351

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           M++LLGR+  + +A DLIK +  +P+ ++W  LL  C M  ++  GE++AR LFEL+P N
Sbjct: 352 MVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKN 411

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA  GRWEDV  +R  MK+  + K   +S ++I  +VH F+  DR HP+ 
Sbjct: 412 CGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQH 471

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           E IYE L KL  KLQE G+ P+   VLHD   EEK   +  HSEKLA+A+ ++    G T
Sbjct: 472 EKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTT 531

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I I+KN+RVCGDCH  +KF S I+ R I++RDS RFHHF  G CSC D W
Sbjct: 532 -IHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 166/307 (54%), Gaps = 10/307 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ + D+   ++      +  +EP+  F+ + L+  Y+K G+L  AR LFD++  R+I+S
Sbjct: 86  CSALLDLHSGRQAHQQALIFGFEPDL-FVSSALVDMYSKCGELRDARTLFDEISHRNIVS 144

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-R 151
           W ++++ + ++        +FD M  RD +S+N+ IA +A  G S E++++F RM KD  
Sbjct: 145 WTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGE 204

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
                 T  + L ACA     R GK IH +++   L  NVFV  ++ DMY K G+++ AR
Sbjct: 205 INYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMAR 264

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             FDRM  +N+ SW+ M++GY  +G  K+ +++F EM + G+ P+ +T  ++L AC   G
Sbjct: 265 KAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAG 324

Query: 272 RIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +++    F  +  + +V      +  M+    + G  ++A  L   M    +RPD    
Sbjct: 325 LLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM---KLRPDFVVW 381

Query: 327 SSVVSSC 333
            +++ +C
Sbjct: 382 GALLGAC 388


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/639 (37%), Positives = 369/639 (57%), Gaps = 38/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+S +     V+  + LFD++  RD +S+N+ I+G+   G     +++F +M     +
Sbjct: 290 NSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVD 349

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
               T V+   ACA +  L  GK +H   I    L   V   N L DMY+K G+++ A  
Sbjct: 350 IDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIR 409

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +F+RM+ + +VSW  MI+GY++ G     I LF EM+  G+ PD   V++IL AC     
Sbjct: 410 VFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGN 469

Query: 268 FQTGRI------------------------------DDAGRLFHVIKEKDNVCWTTMIVG 297
            ++G+I                               DA  +F  +K+KD + W TMI G
Sbjct: 470 LKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGG 529

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           YT+N    +AL LF EM  E  +PD  +++ ++ +CA LA+L  G+ +HG A+  G  +D
Sbjct: 530 YTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSED 588

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V++A++DMY KCG+   A ++F+M+P +++VSW  MI GY  +G   EA+  ++++  
Sbjct: 589 KYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRM 648

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             ++PD  +F+S+L AC H+ L + G   F+ +     I P+L+HYACM++LL R+ ++ 
Sbjct: 649 TGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLV 708

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           KA   IK++P KP++ IW  LL  C +  D+K  E  A  +FELEP N G Y++L+N+YA
Sbjct: 709 KAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYA 768

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
              +WE+V  +R  +  + +KK    SWIEI  K++ FV+ D + P+ + I   L +L  
Sbjct: 769 EAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRS 828

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K++E G+SP T   L +  E EK  ++C HSEKLA+A+ ++  P G T IR+ KN+RVCG
Sbjct: 829 KMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKT-IRVTKNLRVCG 887

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S    R IILRDS+RFHHF  G+CSC+  W
Sbjct: 888 DCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 206/387 (53%), Gaps = 41/387 (10%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +++ R +FDK+       +N  I+ ++  G   E++ +F +M +   +P 
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF--VRNALTDMYAKGGEIDKARWL 213
            YT  S L   A +  +  G+Q+HG  ++  LG N +  V N+L   Y  G ++  A+ L
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHG--LICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD + +R+++SWN MISGY+KNG   + I++F +M + G++ D  T+ N+  AC      
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTL 368

Query: 269 -------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + G ++ A R+F  + EK  V WT+MI G
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITG 428

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y + G  + A+ LF+EM S  V PD ++++S++++CA   +L  G++VH       ++ +
Sbjct: 429 YVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETN 488

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             VS+AL DMY KCG   DA  VF+ M  ++V+SWN+MI GY +N    EAL L+ ++ +
Sbjct: 489 SFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQR 548

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQ 444
           E+ KPD  T   +L AC      ++G+
Sbjct: 549 ES-KPDGTTVACILPACASLAALDKGR 574



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 179/408 (43%), Gaps = 80/408 (19%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK+ ++  +      R++   N LL  +++ G +     +F++M  +  VS+ + I G+ 
Sbjct: 371 GKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYV 430

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            +G S  A+++F  M+     P  Y   S LNACA   +L+ GK +H  I   NL  N F
Sbjct: 431 REGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSF 490

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V NALTDMYAK G +  A  +F  M  ++++SWN MI GY KN  P + + LF EMQ   
Sbjct: 491 VSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES 550

Query: 253 LNPDEVTVSNILGACFQTGRIDD-----------------------------------AG 277
             PD  TV+ IL AC     +D                                    A 
Sbjct: 551 -KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLAR 609

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            LF +I  KD V WT MI GY  +G   +A+  FN+M    + PD+ S  S++ +C+   
Sbjct: 610 SLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACS--- 666

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-----NVVSW 392
                                             G+ D+ W +FN+M        N+  +
Sbjct: 667 --------------------------------HSGLLDEGWKIFNIMKKECQIEPNLEHY 694

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADL 439
             M++  A+ G  ++A      +    +KPD+  + ++L  C +H D+
Sbjct: 695 ACMVDLLARTGNLVKAHKFIKAM---PIKPDATIWGALLCGCRIHHDV 739



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 33/275 (12%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D + SRG      A T ++  C    +++  K +  ++  N  E N+ F+ N L   YAK
Sbjct: 443 DEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNS-FVSNALTDMYAK 501

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            G +  A D+F  M  +D+ISW                               NT I G+
Sbjct: 502 CGSMKDAHDVFSHMKKKDVISW-------------------------------NTMIGGY 530

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                  EAL +F+ MQ++  +P   T    L ACA L  L +G++IHG  +      + 
Sbjct: 531 TKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDK 589

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           +V NA+ DMY K G +  AR LFD + N++LVSW +MI+GY  +G   + I+ F +M++ 
Sbjct: 590 YVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMT 649

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           G+ PDEV+  +IL AC  +G +D+  ++F+++K++
Sbjct: 650 GIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKE 684



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 11/178 (6%)

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           IV + + G  ++A+ L     S++   D  +  S++  CA+  S+  G+ V       GV
Sbjct: 124 IVEFCEVGDLKNAMELLCS--SQNSNFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGV 181

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D ++   L+ MY KCG   +   VF+ +    +  WN MI+ Y+ +G   E++ L+ +
Sbjct: 182 MIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQ 241

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--DHYACMINLL 470
           +L+  +KP+S+TF S+L         E G+        VHG+   L  + Y  ++N L
Sbjct: 242 MLELGIKPNSYTFSSILKCFAAVARVEEGRQ-------VHGLICKLGFNSYNTVVNSL 292


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 253/693 (36%), Positives = 377/693 (54%), Gaps = 84/693 (12%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + ++   NAL++ ++R  S+ D R +FD+M + D VS+N+ I  +A  G  + AL++FSR
Sbjct: 159 ISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSR 218

Query: 147 MQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M  +    P + T V+ L  CA L     GKQ+H   V   +  N+FV N L DMYAK G
Sbjct: 219 MTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCG 278

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ---------------- 249
            +D+A  +F  M+ +++VSWN M++GY + G+ +  + LF++MQ                
Sbjct: 279 MMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAIS 338

Query: 250 -----------------LL--GLNPDEVTVSNILGACFQTG------------------- 271
                            +L  G+ P+EVT+ ++L  C   G                   
Sbjct: 339 GYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDL 398

Query: 272 -----------------------RIDDAGRLFHVI--KEKDNVCWTTMIVGYTQNGKEED 306
                                  ++D A  +F  +  KE+D V WT MI GY+Q+G    
Sbjct: 399 RKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANK 458

Query: 307 ALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSA 363
           AL L +EM  ED   RP+ F+IS  + +CA LA+L  G+ +H  A+    +   L VS+ 
Sbjct: 459 ALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNC 518

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KCG   DA  VF+ M  +N V+W S++ GY  +G   EAL ++D++ +   K D
Sbjct: 519 LIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             T + VL AC H+ + ++G  +F+ +  V G++P  +HYAC+++LLGR+  ++ A+ LI
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLI 638

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P +P  ++W   LS C + G ++ GE AA  + EL   + G Y +LSN+YA  GRW+
Sbjct: 639 EEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWK 698

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  IRS M+ K VKK    SW+E       F   D+THP  + IY+ L   ++++++ G
Sbjct: 699 DVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIG 758

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P T   LHD  +EEK   +  HSEKLALAY ++  P G   IRI KN+RVCGDCH   
Sbjct: 759 YVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAA-IRITKNLRVCGDCHTAF 817

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + S II   IILRDS+RFHHF  G+CSCK  W
Sbjct: 818 TYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/504 (27%), Positives = 228/504 (45%), Gaps = 90/504 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSY--NTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+S +   G +    +L  + P  D+  Y  N+ I  + + G + + L +F  M    + 
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P +YT      AC ++  +R G+  H   +V     NVFV NAL  MY++   +  AR +
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC----- 267
           FD M+  ++VSWN +I  Y K G+PK  +++F  M    G  PD +T+ N+L  C     
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + G +D+A  +F  +  KD V W  M+ G
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAG 304

Query: 298 YTQNGKEEDALILFN-----------------------------------EMLSEDVRPD 322
           Y+Q G+ EDA+ LF                                    +MLS  ++P+
Sbjct: 305 YSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPN 364

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-------DDLLVSSALIDMYCKCGVTD 375
           + ++ SV+S CA + +L HG+ +H  A+   +D       D+ +V + LIDMY KC   D
Sbjct: 365 EVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 376 DAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--KPDSFTFVSVL 431
            A  +F+ +    R+VV+W  MI GY+Q+G   +AL L  ++ +E+   +P++FT    L
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 432 SACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
            AC        G Q H  ++       P L    C+I++  +   +  A  +  ++  K 
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVP-LFVSNCLIDMYAKCGSISDARLVFDNMMAK- 542

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMA 514
           N + W++L++   M G   +GE A
Sbjct: 543 NEVTWTSLMTGYGMHG---YGEEA 563



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 180/378 (47%), Gaps = 52/378 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YAK G +  A  +F  M ++D++SWNA+++ +++ G  +D   LF+KM   
Sbjct: 265 FVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEE 324

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
               D V+++ AI+G+A +G   EAL V  +M     +P + T +S L+ CA +  L  G
Sbjct: 325 KIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHG 384

Query: 176 KQIHGKIVVGNL-------GGNVFVRNALTDMYAKGGEIDKARWLFDRMN--NRNLVSWN 226
           K+IH   +   +       G    V N L DMYAK  ++D AR +FD ++   R++V+W 
Sbjct: 385 KEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWT 444

Query: 227 LMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGAC----------------- 267
           +MI GY ++G   K ++L  EM  +     P+  T+S  L AC                 
Sbjct: 445 VMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYAL 504

Query: 268 -------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                               + G I DA  +F  +  K+ V WT+++ GY  +G  E+AL
Sbjct: 505 RNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEAL 564

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDM 367
            +F+EM     + D  ++  V+ +C+    +  G +  +    V GV       + L+D+
Sbjct: 565 GIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDL 624

Query: 368 YCKCGVTDDAWTVFNMMP 385
             + G  + A  +   MP
Sbjct: 625 LGRAGRLNAALRLIEEMP 642



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C  +  + + K++ ++   N       F+ N L+  YAK G +  AR +FD M  ++
Sbjct: 484 LVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKN 543

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
            ++W +L++ +   G  ++   +FD+M       D V+    +   ++ G   + ++ F+
Sbjct: 544 EVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFN 603

Query: 146 RMQ 148
           RM+
Sbjct: 604 RMK 606


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/645 (36%), Positives = 365/645 (56%), Gaps = 38/645 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  +++ G ++    +F K+P  D VS+N  I+G    G  + AL++  +M
Sbjct: 235 KDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +T  S L ACA       G+QIHG +V  N   + ++   L DMYAK G +
Sbjct: 295 KSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLL 354

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D A+ +FD +  R+LV WN +ISG     Q  + + LF  M+  G + +  T++ +L + 
Sbjct: 355 DDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKST 414

Query: 268 FQTGRIDDAGRLFHVIKEK------------------------------------DNVCW 291
                I D  R  H + EK                                    D + +
Sbjct: 415 ASLEAISDT-RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAF 473

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+MI   +Q    EDA+ LF EML + + PD F +SS++++CA L++   G+ VH   + 
Sbjct: 474 TSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                D+   +AL+  Y KCG  +DA   F+ +P + VVSW++MI G AQ+G    AL +
Sbjct: 534 RQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDV 593

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + +++ E++ P+  T  SVL AC HA L +  + +F+S+  + GI  + +HYACMI+LLG
Sbjct: 594 FHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLG 653

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +D A++L+ S+P + N+ +W  LL+   +  D + G +AA  LF LEP  +G +++
Sbjct: 654 RAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVL 713

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N YA+ G W+DVA +R  MK   VKK  A SW+E+ +KVH F+  D++HP    IY +
Sbjct: 714 LANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAK 773

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L +L   + +AG+ PN ++ LHD  + EK   + +HSE+LA+A+ LI  P G  PIR+ K
Sbjct: 774 LDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAG-APIRVKK 832

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R+C DCH   KF SDI+ R II+RD NRFHHF  G CSC+D W
Sbjct: 833 NLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 152/544 (27%), Positives = 245/544 (45%), Gaps = 83/544 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LLS +++       R +FD++P    VS+++ +  ++N    R+AL  F  M+     
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVR 100

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++     L  CA   D   G Q+H   +   LGG++FV NAL  MY   G +D+AR +
Sbjct: 101 CNEFVLPVVLK-CAP--DAGFGTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMV 157

Query: 214 FDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           FD     RN VSWN ++S Y+KN +    + +F EM   G+ P+E   S ++ AC  TG 
Sbjct: 158 FDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNAC--TGS 215

Query: 273 ID-DAGRLFHV------------------------------------IKEKDNVCWTTMI 295
            D +AGR  H                                     + E D V W   I
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G   +G ++ AL L  +M S  + P+ F++SS++ +CA   +   G+ +HG  V    D
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D  ++  L+DMY K G+ DDA  VF+ +P R++V WN++I+G +   Q  EAL+L+ ++
Sbjct: 336 SDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRM 395

Query: 416 LQENLKPDSFTFVSVL--SACLHADLFERGQNH-----FDSISAVHGITPSLDHY----- 463
            +E    +  T  +VL  +A L A + +  Q H        +S  H +   +D Y     
Sbjct: 396 RKEGFDVNRTTLAAVLKSTASLEA-ISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDC 454

Query: 464 -------------------ACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSV 501
                                MI  L +    + A+ L   +  K   P+  + S+LL+ 
Sbjct: 455 LNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNA 514

Query: 502 CAMKGDIKHGEMAARHLFE---LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           CA     + G+    HL +   +  + AG  ++ +  YA CG  ED     S +  K V 
Sbjct: 515 CASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYT--YAKCGSIEDADLAFSGLPEKGVV 572

Query: 559 KFAA 562
            ++A
Sbjct: 573 SWSA 576



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 130/488 (26%), Positives = 231/488 (47%), Gaps = 42/488 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRM 147
           DI   NAL++ +   G V + R +FD+    R++VS+N  ++ +        A++VF  M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +P ++     +NAC    DL  G+++H  ++      +VF  NAL DMY+K G+I
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDI 253

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  +F ++   ++VSWN  ISG + +G  +  ++L  +M+  GL P+  T+S+IL AC
Sbjct: 254 RMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                F  GR                              +DDA ++F  I ++D V W 
Sbjct: 314 AGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWN 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I G +   +  +AL LF  M  E    ++ ++++V+ S A L ++   + VH  A  L
Sbjct: 374 ALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKL 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  V + LID Y KC   + A+ VF    + +++++ SMI   +Q     +A+ L+
Sbjct: 434 GFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLF 493

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L++ L PD F   S+L+AC     +E+G+     +     ++      A ++    +
Sbjct: 494 MEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNA-LVYTYAK 552

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIM 531
              ++ A      LP K   + WS ++   A  G   HG+ A      +   +  P +I 
Sbjct: 553 CGSIEDADLAFSGLPEK-GVVSWSAMIGGLAQHG---HGKRALDVFHRMVDEHISPNHIT 608

Query: 532 LSNMYAAC 539
           ++++  AC
Sbjct: 609 MTSVLCAC 616


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/637 (37%), Positives = 372/637 (58%), Gaps = 35/637 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + + G+V+  R LFDK  ++  V++N+ I+G+A  G   EAL +F  M+ +   
Sbjct: 237 NSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVR 296

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            ++ +  S +  CA L +LR  +Q+H  +V      +  +R AL   Y+K   +  A  L
Sbjct: 297 LSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRL 356

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           F       N+VSW  MISG+L+N   ++ + LF EM+  G+ P+E T S IL A      
Sbjct: 357 FKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP 416

Query: 268 --------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      + G++D+A ++F  I  KD V W+ M+ GY Q 
Sbjct: 417 SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQA 476

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCA-KLASLYHGQVVHGKAVVLGVDDDLLV 360
           G+ E A+ +F+E+    V+P++F+ SS+++ CA   AS+  G+  HG A+   +D  L V
Sbjct: 477 GETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCV 536

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+ MY K G  + A  VF     +++VSWNSMI+GYAQ+GQ ++AL ++ ++ +  +
Sbjct: 537 SSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 596

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           K DS TF+ V +AC HA L E G+ +FD +     I P+ +H +CM++L  R+  ++KA+
Sbjct: 597 KMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAM 656

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            +I ++P+   S IW T+L+ C +    + G +AA  +  + P ++  Y++LSNMYA  G
Sbjct: 657 KVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESG 716

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            W++ A +R  M  +NVKK   YSWIE+ NK + F++ DR+HP  + IY +L  L  +L+
Sbjct: 717 DWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLK 776

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T  VL D  +E K   +  HSE+LA+A+ LI  P G +P+ I+KN+RVCGDCH
Sbjct: 777 DLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKG-SPLLIIKNLRVCGDCH 835

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVG-GNCSCKDNW 696
           + +K  + I  R I++RDSNRFHHF   G CSC D W
Sbjct: 836 VVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 133/472 (28%), Positives = 236/472 (50%), Gaps = 49/472 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D+    +L+  + +  + +D R +FD+M  R+ V++ T I+G+A    + E L +F R
Sbjct: 129 LDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMR 188

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ +  +P  +T  +AL   A+     RG Q+H  +V   L   + V N+L ++Y K G 
Sbjct: 189 MQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGN 248

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + KAR LFD+   +++V+WN MISGY  NG   + + +F  M+L  +   E + ++I+  
Sbjct: 249 VRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKL 308

Query: 267 CFQTGRID-----------------------------------DAGRLFHVIKEKDNVC- 290
           C     +                                    DA RLF       NV  
Sbjct: 309 CANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVS 368

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WT MI G+ QN  +E+A+ LF+EM  + VRP++F+ S ++++   ++       VH + V
Sbjct: 369 WTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISP----SEVHAQVV 424

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
               +    V +AL+D Y K G  D+A  VF+ +  +++V+W++M+ GYAQ G+   A+ 
Sbjct: 425 KTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIK 484

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINL 469
           ++ +L +  +KP+ FTF S+L+ C  A     GQ   F   +    +  SL   + ++ +
Sbjct: 485 IFSELTKGGVKPNEFTFSSILNVC-AATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTM 543

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE-MAARHLFE 520
             +   ++ A ++ K    K + + W++++S     G  +HG+ M A  +F+
Sbjct: 544 YAKKGHIESAEEVFKRQREK-DLVSWNSMIS-----GYAQHGQAMKALDVFK 589



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 127/457 (27%), Positives = 204/457 (44%), Gaps = 65/457 (14%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LFDK P RD  SY + + GF+  G ++EA ++F  +Q    E       S L   A L D
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              G+Q+H + +      +V V  +L D Y KG      R +FD M  RN+V+W  +ISG
Sbjct: 113 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISG 172

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
           Y +N   ++ + LF  MQ  G  P+  T +  LG                          
Sbjct: 173 YARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 232

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       + G +  A  LF   + K  V W +MI GY  NG + +AL +F  M  
Sbjct: 233 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 292

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             VR  + S +S++  CA L  L   + +H   V  G   D  + +AL+  Y KC    D
Sbjct: 293 NHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLD 352

Query: 377 AWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC- 434
           A  +F       NVVSW +MI+G+ QN    EA+ L+ ++ ++ ++P+ FT+  +L+A  
Sbjct: 353 ALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP 412

Query: 435 ------LHADL----FER----GQNHFDS------ISAVHGITPSLDH-----YACMINL 469
                 +HA +    +ER    G    D+      +     +   +D+     ++ M+  
Sbjct: 413 VISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAG 472

Query: 470 LGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCA 503
             ++ + + A+ +   L     KPN   +S++L+VCA
Sbjct: 473 YAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCA 509



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 190/419 (45%), Gaps = 72/419 (17%)

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA------ 266
           LFD+  +R+  S+  ++ G+ ++G+ ++   LF  +Q LG+  D    S++L        
Sbjct: 53  LFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSATLCD 112

Query: 267 ----------CFQTGRIDDA------------------GR-LFHVIKEKDNVCWTTMIVG 297
                     C + G +DD                   GR +F  +KE++ V WTT+I G
Sbjct: 113 ELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISG 172

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y +N   E+ L LF  M  E  +P+ F+ ++ +   A+      G  VH   V  G+D  
Sbjct: 173 YARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKT 232

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + VS++LI++Y KCG    A  +F+    ++VV+WNSMI+GYA NG DLEAL ++  +  
Sbjct: 233 IPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRL 292

Query: 418 ENLKPDSFTFVSVLSAC-----------LHADLFERG----QNHFDSISAVH-------- 454
            +++    +F S++  C           LH  + + G    QN   ++   +        
Sbjct: 293 NHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLD 352

Query: 455 --------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCA 503
                   G   ++  +  MI+   ++   ++AV L   +  K   PN   +S +L+   
Sbjct: 353 ALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP 412

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           +   I   E+ A+ +      ++     L + Y   G+ ++ A + S + +K++  ++A
Sbjct: 413 V---ISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSA 468



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/244 (28%), Positives = 125/244 (51%), Gaps = 7/244 (2%)

Query: 267 CF---QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           CF    + R+  A  LF    ++D   +T+++ G++++G+ ++A  LF  +    +  D 
Sbjct: 38  CFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDC 97

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
              SSV+   A L     G+ +H + +  G  DD+ V ++L+D Y K     D   VF+ 
Sbjct: 98  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDE 157

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  RNVV+W ++I+GYA+N  + E L L+ ++  E  +P+SFTF + L       +  RG
Sbjct: 158 MKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRG 217

Query: 444 -QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            Q H  ++   +G+  ++     +INL  +  +V KA  L      K + + W++++S  
Sbjct: 218 LQVH--TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISGY 274

Query: 503 AMKG 506
           A  G
Sbjct: 275 AANG 278



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 81/194 (41%), Gaps = 36/194 (18%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           LL  YAK G +  A ++F +   +D++SWN+++S +A+ G       +F +M  R    D
Sbjct: 540 LLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMD 599

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTD---------YTHVSALNACAQLL 170
           SV++    A   + G   E  + F  M +D +  PT          Y+    L    +++
Sbjct: 600 SVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVI 659

Query: 171 D-------------LRRGKQIHGKIVVGNLGGNVFVRNA---------LTDMYAKGGEID 208
           D             +    ++H K  +G L     +            L++MYA+ G+  
Sbjct: 660 DNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQ 719

Query: 209 KARWLFDRMNNRNL 222
           +   +   MN RN+
Sbjct: 720 ERAKVRKLMNERNV 733


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 251/644 (38%), Positives = 374/644 (58%), Gaps = 44/644 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ +A+SG++ D  ++F+ M  +DSVS+N+ I+G      S +A + F RM++    
Sbjct: 899  NGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSM 958

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P+++T +S L++CA L  +  G+QIH   +   L  +V V NAL  +YA+ G   +   +
Sbjct: 959  PSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKV 1018

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPK--KCIDLFQEMQLLGLNPDEVTVSNILGA----- 266
            F  M   + VSWN +I G L + +    + +  F EM   G     VT  NIL A     
Sbjct: 1019 FSLMPEYDQVSWNSVI-GALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLS 1077

Query: 267  -----------------------------CF-QTGRIDDAGRLFHVIKE-KDNVCWTTMI 295
                                         C+ + G +++  ++F  + E +D V W +MI
Sbjct: 1078 LHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 1137

Query: 296  VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             GY  N     A+ L   M+ +  R D F+ ++V+S+CA +A+L  G  VH   +   ++
Sbjct: 1138 SGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACME 1197

Query: 356  DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
             D++V SAL+DMY KCG  D A   F +MP RNV SWNSMI+GYA++G   +AL L+ ++
Sbjct: 1198 SDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRM 1257

Query: 416  LQENLKPDSFT-FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            + +   PD     + VLSAC H    E G  HF S+S V+ ++P ++H++CM++LLGR+ 
Sbjct: 1258 MLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAG 1317

Query: 475  DVDKAVDLIKSLPHKPNSLIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINAGPYIML 532
             +D+  D I S+P KPN LIW T+L  C  A   + + G  AA  L ELEP NA  Y++L
Sbjct: 1318 KLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLL 1377

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
            +NMYA+  +WEDVA  R +MK   VKK A  SW+ + + VH FV+ D+ HPE + IY++L
Sbjct: 1378 ANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKL 1437

Query: 593  SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             +L +K+++AG+ P TK  L D + E K + + YHSEK+A+A+ L ++     PIRIMKN
Sbjct: 1438 RELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQ--SALPIRIMKN 1495

Query: 653  IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +RVCGDCH    + S I+GR I+LRDSNRFHHF  G CSC D W
Sbjct: 1496 LRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 149/562 (26%), Positives = 257/562 (45%), Gaps = 93/562 (16%)

Query: 89   DIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            D++  N L+S +     S  D R++FD++ IR+S+S+N+ I+ ++ +G    A  +FS M
Sbjct: 681  DVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSM 740

Query: 148  QKD----RFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            QK+     F+P +YT  S + A    +D  L   +Q+  ++       +++V +AL   +
Sbjct: 741  QKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGF 800

Query: 202  AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL---------- 251
            A+ G  D A+ +F++M  RN+VS N ++ G +K  Q +    +F EM+ L          
Sbjct: 801  ARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV 860

Query: 252  ----------------------------GLNPDEVTVSNILGACF-QTGRIDDAGRLFHV 282
                                        GLN ++V + N L   + ++G I DA  +F +
Sbjct: 861  LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFEL 920

Query: 283  IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
            + EKD+V W ++I G  QN   EDA   F  M      P  F++ S +SSCA L  +  G
Sbjct: 921  MVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLG 980

Query: 343  QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
            + +H   + LG+D D+ VS+AL+ +Y + G   +   VF++MP  + VSWNS+I   + +
Sbjct: 981  EQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDS 1040

Query: 403  GQDL-EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ----------------- 444
               + +A+  + ++++        TF+++LSA     L E                    
Sbjct: 1041 EASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAI 1100

Query: 445  --------------NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
                          N  + I A    T     +  MI+    +  + KA+DL+  +  K 
Sbjct: 1101 GNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG 1160

Query: 491  ---NSLIWSTLLSVCAMKGDIKHG-EMAA---RHLFELEPINAGPYIMLSNMYAACGRWE 543
               +S  ++T+LS CA    ++ G E+ A   R   E + +       L +MY+ CGR +
Sbjct: 1161 QRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSA---LVDMYSKCGRID 1217

Query: 544  DVASIRSSMKSKNVKKFAAYSW 565
              +     M  +NV     YSW
Sbjct: 1218 YASRFFELMPLRNV-----YSW 1234



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 186/424 (43%), Gaps = 81/424 (19%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL N L++ Y + G L  A+ LFD+M  R++++W  L+S                     
Sbjct: 580 FLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLIS--------------------- 618

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLDLRRGKQ 177
                     G+   G   EA   F  M +  F P  Y   SAL AC +      + G Q
Sbjct: 619 ----------GYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQ 668

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           IHG I     G +V V N L  MY       + AR +FDR+  RN +SWN +IS Y + G
Sbjct: 669 IHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRG 728

Query: 237 QPKKCIDLFQEMQLLGLN----PDEVTVSNIL---------GACF--------------- 268
                 DLF  MQ  GL     P+E T  +++         G C                
Sbjct: 729 DXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQ 788

Query: 269 -------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G  DDA  +F  +  ++ V    ++VG  +  + E A  +F+EM 
Sbjct: 789 DLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM- 847

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYH----GQVVHGKAVVLGVDDD-LLVSSALIDMYCK 370
            + V  +  S   ++S+ ++ + L      G+ VH   +  G++D+ + + + L++MY K
Sbjct: 848 KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 907

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            G   DA +VF +M  ++ VSWNS+I+G  QN    +A   + ++ +    P +FT +S 
Sbjct: 908 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLIST 967

Query: 431 LSAC 434
           LS+C
Sbjct: 968 LSSC 971



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 180/377 (47%), Gaps = 56/377 (14%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            +++H + +     GN+F+ N L ++Y + G++  A+ LFD M+NRNLV+W  +ISGY +
Sbjct: 563 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 622

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG----------------------- 271
           NG+P +    F++M   G  P+     + L AC ++G                       
Sbjct: 623 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 682

Query: 272 ---------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                            +DA  +F  I  ++++ W ++I  Y++ G    A  LF+ M  
Sbjct: 683 VVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQK 742

Query: 317 EDV----RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----GVDDDLLVSSALIDMY 368
           E +    +P++++  S+++  A  +S+  G  V  + +      G   DL V SAL+  +
Sbjct: 743 EGLGFSFKPNEYTFGSLIT--AACSSVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGF 800

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            + G+TDDA  +F  M  RNVVS N ++ G  +  Q   A  ++ + +++ +  +S ++V
Sbjct: 801 ARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHE-MKDLVGINSDSYV 859

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC-----MINLLGRSSDVDKAVDLI 483
            +LSA     + E G+     + A H I   L+         ++N+  +S  +  A  + 
Sbjct: 860 VLLSAFSEFSVLEEGRRKGREVHA-HVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVF 918

Query: 484 KSLPHKPNSLIWSTLLS 500
           + +  K +S+ W++L+S
Sbjct: 919 ELMVEK-DSVSWNSLIS 934



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 145/353 (41%), Gaps = 81/353 (22%)

Query: 61   LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA-----------------RS 103
            + N LL  YA++G       +F  MP  D +SWN+++ A +                 R 
Sbjct: 998  VSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRG 1057

Query: 104  G------------------SVQDLRALFDKMPIRDSVSYNTAIAG-----FANKGFSREA 140
            G                  S+ ++      + ++  +S +TAI       +   G   E 
Sbjct: 1058 GWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNEC 1117

Query: 141  LQVFSRMQKDRFEPT--------------------------------DYTHVSALNACAQ 168
             ++F+RM + R E +                                 +T  + L+ACA 
Sbjct: 1118 EKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACAS 1177

Query: 169  LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
            +  L RG ++H   +   +  +V V +AL DMY+K G ID A   F+ M  RN+ SWN M
Sbjct: 1178 VATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSM 1237

Query: 229  ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-VSNILGACFQTGRIDDAGRLFHVIKEKD 287
            ISGY ++G  +K + LF  M L G  PD V  +  +L AC   G +++    F  + E  
Sbjct: 1238 ISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVY 1297

Query: 288  NVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
             +      ++ M+    + GK ++     N M    ++P+     +V+ +C +
Sbjct: 1298 RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSM---PMKPNVLIWRTVLGACCR 1347



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +++  G   +L +S+ LI++Y + G    A  +F+ M  RN+V+W  +I+GY QNG+
Sbjct: 566 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 625

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL---- 460
             EA A +  +++    P+ + F S L AC      E G +       +HG+        
Sbjct: 626 PDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGPSGCKLGVQIHGLISKTRYGS 680

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGD 507
           D   C + +    S +D A D  +S+  +    NS+ W++++SV + +GD
Sbjct: 681 DVVVCNVLISMYGSCLDSAND-ARSVFDRIGIRNSISWNSIISVYSRRGD 729



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D++  +AL+  +++ G +      F+ MP+R+  S+N+ I+G+A  G   +AL++F+RM 
Sbjct: 1199 DVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 1258

Query: 149  KDRFEPTDYTH--VSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
             D  +P D+    +  L+AC+ +  +  G +       V  L   V   + + D+  + G
Sbjct: 1259 LDG-QPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAG 1317

Query: 206  EIDKARWLFDRMNNR-NLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            ++D+     + M  + N++ W  ++    + NG+  +      EM LL L P       +
Sbjct: 1318 KLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEM-LLELEPQNAVNYVL 1376

Query: 264  LGACFQTG-RIDDAGRLFHVIKE----KDNVC-WTTM 294
            L   + +G + +D  +    +KE    K+  C W TM
Sbjct: 1377 LANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTM 1413


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/636 (36%), Positives = 367/636 (57%), Gaps = 37/636 (5%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L++  +  G V   R LFDK P  D   +N  +  ++  GF   A+++++RMQ     P 
Sbjct: 113 LVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPD 172

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            ++    L AC+ L  L  G+++HG+I       +VFV+N L  +YAK GEI +A  +F 
Sbjct: 173 GFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFG 232

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--------- 266
           R+ +R +VSW  +ISGY +NGQP + + +F EM+   + PD + + ++L A         
Sbjct: 233 RLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEH 292

Query: 267 ------CF--------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                 C                     + G +  A   F+ ++    + W  MI GY +
Sbjct: 293 GKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVK 352

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG  E+A+ LF  M S+++RPD  +++S +++CA++ SL   + +     +    +D++V
Sbjct: 353 NGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIV 412

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +++LID Y KCG  D A  VF+ +P ++VV W++M+ GY  +GQ  E++ L+  + Q  +
Sbjct: 413 NTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGV 472

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            P+  TFV +L+AC ++ L E G + F  +   +GI P   HYAC+++LLGR+  +D+A 
Sbjct: 473 SPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD-YGIEPRHQHYACVVDLLGRAGHLDRAY 531

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           + + ++P +P   +W  LLS C +   +  GE AA  LF L+P N G Y+ LSN+YA+  
Sbjct: 532 NFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSC 591

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            W+ VA +R  M+ K + K   YS IEI+ K+  F + D+THP ++ I+EE+  L ++L+
Sbjct: 592 LWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLK 651

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAGF P+T+ VLHD   EE  +++C HSE+LA+AY LI  P G T +RI KN+R C +CH
Sbjct: 652 EAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTT-LRITKNLRACDNCH 710

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S ++ R I++RD+ RFHHF  G CSC D W
Sbjct: 711 AAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 179/370 (48%), Gaps = 47/370 (12%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           QI+ K++V  L    F+   L +  +  GE+  AR LFD+  + ++  WN ++  Y ++G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQT------ 270
                I+++  MQ+  ++PD  +   +L AC                    F++      
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G I  A  +F  + ++  V WT++I GY QNG+  +AL +F+EM   +VRP
Sbjct: 213 GLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRP 272

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  ++ SV+ +   +  L HG+ +HG  + +G++ +  +  +L  +Y KCG    A   F
Sbjct: 273 DWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFF 332

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           N +   +++ WN+MI+GY +NG   EA+ L+  +  +N++PDS T  S ++AC      E
Sbjct: 333 NQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLE 392

Query: 442 --RGQNHFDSISAVHG---ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
             R  + + S+S       +  SL      I+   +   VD A  +   +P K + ++WS
Sbjct: 393 LARWMDEYISMSEFRNDVIVNTSL------IDTYAKCGSVDMARFVFDRIPDK-DVVVWS 445

Query: 497 TLLSVCAMKG 506
            ++    + G
Sbjct: 446 AMMVGYGLHG 455



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 145/299 (48%), Gaps = 33/299 (11%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           ++ ++ + GL      ++ ++      G +  A +LF    + D   W  ++  Y+++G 
Sbjct: 94  IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              A+ ++  M    V PD FS   V+ +C+ L +L  G+ VHG+    G + D+ V + 
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ +Y KCG    A  VF  +  R +VSW S+I+GYAQNGQ +EAL ++ ++ + N++PD
Sbjct: 214 LVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPD 273

Query: 424 SFTFVSVLSACLHADLFERGQN------------HFDSISAVHGI--------------- 456
               VSVL A    +  E G++             FD + ++  +               
Sbjct: 274 WIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFN 333

Query: 457 ---TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIK 509
               PSL  +  MI+   ++   ++A++L + +  K   P+S+  ++ ++ CA  G ++
Sbjct: 334 QVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLE 392



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T  +  C ++  +ELA+ +  ++ ++ +  N   ++  L+  YAK G +  AR +FD++P
Sbjct: 379 TSSIAACAQIGSLELARWMDEYISMSEFR-NDVIVNTSLIDTYAKCGSVDMARFVFDRIP 437

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQ 142
            +D++ W+A++  +   G  ++   LF  M       + V++   +    N G   E   
Sbjct: 438 DKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWD 497

Query: 143 VFSRMQKDRFEP 154
           +F RM+    EP
Sbjct: 498 LFHRMRDYGIEP 509



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 10/232 (4%)

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           +PDKF  S +  S  K     H   ++ K +V G+     + + L++     G    A  
Sbjct: 73  KPDKFYASLIDDSIHKT----HLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARK 128

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+  P  +V  WN+++  Y+++G    A+ +Y ++    + PD F+F  VL AC     
Sbjct: 129 LFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPA 188

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            E G+     I   HG    +     ++ L  +  ++ +A  +   L  +   + W++++
Sbjct: 189 LEMGRRVHGQIFR-HGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR-TIVSWTSII 246

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACGRWEDVASIRS 550
           S  A  G       A R   E+   N  P +I L ++  A    ED+   +S
Sbjct: 247 SGYAQNGQPIE---ALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/629 (37%), Positives = 367/629 (58%), Gaps = 37/629 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           +L   A+ G++  A+ LFD++   +++SWNA+++ + ++  V +   LF++MP R+++S+
Sbjct: 327 MLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISW 386

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              IAG+A  G S +AL     + +    P+  +  S+  AC+ +  L  GKQ+H   V 
Sbjct: 387 AGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVK 446

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                N +V NAL  +Y K   I   R +FDRM  ++ VS+N  +S  ++N       +L
Sbjct: 447 AGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQN-------NL 499

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F                            D+A  +F+ +   D V WTT+I    Q  + 
Sbjct: 500 F----------------------------DEARDVFNNMPSPDVVSWTTIISACAQADQG 531

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +A+ +F  ML E   P+   ++ ++     L +   GQ +H  A+ LG+D  L+V++AL
Sbjct: 532 NEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANAL 591

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           + MY KC  + D+  VF+ M  R++ +WN++I GYAQ+G   EA+ +Y  ++   + P+ 
Sbjct: 592 VSMYFKCS-SADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNE 650

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TFV +L AC H+ L + G   F S+S+ +G+TP L+HYACM++LLGR+ DV  A   I 
Sbjct: 651 VTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIY 710

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+S+IWS LL  C +  +++ G  AA  LF +EP NAG Y+MLSN+Y++ G W++
Sbjct: 711 DMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDE 770

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA +R  MK + V K    SW++I NK+H FV+ D  H + + IY  L +L   L+  G+
Sbjct: 771 VAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGY 830

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T  VLHD  EE+K  S+ YHSEKLA+AY L+  P G+ PI+IMKN+R+CGDCH F+K
Sbjct: 831 VPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGM-PIQIMKNLRICGDCHTFIK 889

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           F S +  R I +RD NRFHHF  G+CSC+
Sbjct: 890 FVSSVTKREIDVRDGNRFHHFRNGSCSCE 918



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 224/516 (43%), Gaps = 88/516 (17%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P T+    R+     + G+L  AR++FD MP RDII+WN+++ A+  +G     R+L D 
Sbjct: 31  PGTSAQSARIREL-GRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADA 89

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           +   +  +    ++G+A  G  R+A +VF  M           +  A NA          
Sbjct: 90  ISGGNLRTGTILLSGYARAGRVRDARRVFDGM--------GVRNTVAWNAMVTCYVQNGD 141

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             +  K+       +V   N +   Y     +++AR LF+RM  RN VSW +MISGY+  
Sbjct: 142 ITLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLI 201

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR----------------------- 272
            Q  +  D+F+ M   G+ P++  + ++L A    G+                       
Sbjct: 202 EQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVG 261

Query: 273 -------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                        +D A + F  +  ++   W+T+I   +Q G+ +DA  ++        
Sbjct: 262 TAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQ------- 314

Query: 320 RPDKFSISSVVSSCAKLASL-YHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDA 377
              +  + SV S  + L  L  +G++   K +   + +  +VS +A+I  Y +  + D+A
Sbjct: 315 ---RDPLKSVPSRTSMLTGLARYGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEA 371

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             +FN MP RN +SW  MI GYA+NG+  +AL     L ++ + P   +  S   AC + 
Sbjct: 372 EDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNI 431

Query: 438 DLFERGQN-------------------------HFDSISAVHGITPSLD-----HYACMI 467
           +  E G+                           + SI +V  I   +       Y   +
Sbjct: 432 EALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFM 491

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           + L +++  D+A D+  ++P  P+ + W+T++S CA
Sbjct: 492 SALVQNNLFDEARDVFNNMP-SPDVVSWTTIISACA 526



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 199/440 (45%), Gaps = 37/440 (8%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T L+    R   V  A+R+   M +       T   N ++  Y ++G +  AR LFD MP
Sbjct: 99  TILLSGYARAGRVRDARRVFDGMGVR-----NTVAWNAMVTCYVQNGDITLARKLFDAMP 153

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            RD+ SWN +L+ +  S  +++ R LF++MP R+ VS+   I+G+        A  +F  
Sbjct: 154 SRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRT 213

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG-G 205
           M  +   P     VS L+A   L      + IH  +       +V V  A+ + Y K   
Sbjct: 214 MLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVN 273

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE----------MQLLGL-- 253
            +D A   F+ M  RN  +W+ +I+   + G+      ++Q             L GL  
Sbjct: 274 MLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLAR 333

Query: 254 ---------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                           P+ V+ + ++    Q   +D+A  LF+ +  ++ + W  MI GY
Sbjct: 334 YGRIDDAKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGY 393

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            +NG+ E AL+    +  + + P   S++S   +C+ + +L  G+ VH  AV  G   + 
Sbjct: 394 ARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNS 453

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V +ALI +Y K         +F+ M  ++ VS+NS ++   QN    EA  +++ +   
Sbjct: 454 YVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNM--- 510

Query: 419 NLKPDSFTFVSVLSACLHAD 438
              PD  ++ +++SAC  AD
Sbjct: 511 -PSPDVVSWTTIISACAQAD 529



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 195/448 (43%), Gaps = 56/448 (12%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRD--IISWNALLSAHARSGSVQDLRALFDKMPIR 119
           H RLLH Y  S     A  +  +   R     + +A +    R G + + R +FD MP R
Sbjct: 3   HCRLLHRYVSSAAARAAAPIPARHVPRSPGTSAQSARIRELGRLGRLHEAREVFDSMPFR 62

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +++N+ I  + N G                                       G+ + 
Sbjct: 63  DIIAWNSMIFAYCNNGMPDA-----------------------------------GRSLA 87

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I     GGN+     L   YA+ G +  AR +FD M  RN V+WN M++ Y++NG   
Sbjct: 88  DAIS----GGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAMVTCYVQNGDIT 143

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
               LF  M     + D  + + +L     +  +++A  LF  + E++ V WT MI GY 
Sbjct: 144 LARKLFDAMP----SRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYV 199

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
              +   A  +F  ML E + P++ ++ SV+S+   L      + +H      G + D++
Sbjct: 200 LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVV 259

Query: 360 VSSALIDMYCK-CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           V +A+++ Y K   + D A   F  M  RN  +W+++I   +Q G+  +A A+Y +   +
Sbjct: 260 VGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLK 319

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           ++     +  S+L+        +  +  FD I       P++  +  MI    ++  VD+
Sbjct: 320 SVP----SRTSMLTGLARYGRIDDAKILFDQIH-----EPNVVSWNAMITGYMQNEMVDE 370

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           A DL   +P + N++ W+ +++  A  G
Sbjct: 371 AEDLFNRMPFR-NTISWAGMIAGYARNG 397



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 136/271 (50%), Gaps = 2/271 (0%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           ++  L+ +G   +  + T     C+ +  +E  K++ S + +       +++ N L+  Y
Sbjct: 405 SLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHS-LAVKAGCQFNSYVCNALITLY 463

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            K   +   R +FD+M ++D +S+N+ +SA  ++    + R +F+ MP  D VS+ T I+
Sbjct: 464 GKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIIS 523

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
             A      EA+++F  M  +R  P        L     L   + G+QIH   +   +  
Sbjct: 524 ACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDS 583

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
            + V NAL  MY K    D  + +FD M  R++ +WN +I+GY ++G  ++ I ++Q M 
Sbjct: 584 GLVVANALVSMYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMV 642

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
             G+ P+EVT   +L AC  +G +D+  + F
Sbjct: 643 SAGVLPNEVTFVGLLHACSHSGLVDEGHQFF 673



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 20/169 (11%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           SA I    + G   +A  VF+ MP R++++WNSMI  Y  NG      +L D +   NL+
Sbjct: 37  SARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR 96

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
               T   +LS    A      +  FD +   + +      +  M+    ++ D+  A  
Sbjct: 97  ----TGTILLSGYARAGRVRDARRVFDGMGVRNTVA-----WNAMVTCYVQNGDITLARK 147

Query: 482 LIKSLPHKPNSLIWSTLLS-VCAMKGDIKHGEM--AARHLFELEPINAG 527
           L  ++P +  S  W+T+L+  C       H ++   AR+LFE  P   G
Sbjct: 148 LFDAMPSRDVS-SWNTMLTGYC-------HSQLMEEARNLFERMPERNG 188


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/687 (34%), Positives = 390/687 (56%), Gaps = 41/687 (5%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G A ++   T ++  C  +    + +++   + +     +   + N +L+ Y K G
Sbjct: 338 MVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFV-VKLGLSSCVPVANSVLYMYGKCG 396

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
               AR +F++M +R + SWN ++S +   G ++   ++F+ M  R  VS+NT IAG+  
Sbjct: 397 DAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQ 456

Query: 134 KGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            G    AL+ FSRM      EP  +T  S L+ACA L  L+ GKQ+H  I+   +  +  
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQ 516

Query: 193 VRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + NAL   YAK G ++ AR + D+  + + N++S+  ++ GY+K G  K+          
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQ---------- 566

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                    A  +F ++  +D + WT MIVGY QNG+ ++A+ L
Sbjct: 567 -------------------------AREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMEL 601

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M+     P+  ++++V+S+CA LA L +G+ +H KA+    +  + VS+A+I +Y +
Sbjct: 602 FRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYAR 661

Query: 371 CGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            G    A  VF+ +  R   ++W SMI   AQ+G   +A+ L++++++  +KPD  T+V 
Sbjct: 662 SGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYVG 721

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC HA   ++G+ +++ +   HGI P + HYACM++L  R+  + +A + I+ +P  
Sbjct: 722 VLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPVA 781

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P++++W +LL+ C ++ +    E+AA  L  ++P N+G Y  L+N+Y+ACGRW D A I 
Sbjct: 782 PDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACGRWNDAARIW 841

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
              K K VKK   +SW  +  KVH F ++D  HP+ + IY + +++ +++++AGF P+  
Sbjct: 842 KLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIKKAGFVPDLN 901

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VLHD  +E K + +  HSEKLA+A+ LI  P   T +RIMKN+RVC DCH  +KF S  
Sbjct: 902 SVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTT-LRIMKNLRVCNDCHTAIKFISKF 960

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + R II+RD+ RFHHF  G CSCKD W
Sbjct: 961 VDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/517 (23%), Positives = 202/517 (39%), Gaps = 144/517 (27%)

Query: 163 LNACAQLLDLRRGKQIHGKIV--------------------VGNLGG------------- 189
           L  C   ++   G+ IH   V                    VG   G             
Sbjct: 216 LQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREARCLFDDIP 275

Query: 190 ----NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               N F  N+L  +YAK G +  A  +F  M +R+ VSW +MI G  ++G+    +  F
Sbjct: 276 YARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTF 335

Query: 246 QEMQLLGLNPDEVTVSNILGAC--------------------------------FQTGRI 273
            +M   G  P + T++N+L +C                                +  G+ 
Sbjct: 336 LDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKC 395

Query: 274 DDAGR---LFHVIKEKDNVCWTTMI-------------------------------VGYT 299
            DA     +F  ++ +    W  M+                                GY 
Sbjct: 396 GDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYN 455

Query: 300 QNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV---- 354
           QNG +  AL  F+ MLS   + PD F+++SV+S+CA L  L  G+ +H   +  G+    
Sbjct: 456 QNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSS 515

Query: 355 -----------------------------DDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
                                        D +++  +AL++ Y K G T  A  +F++M 
Sbjct: 516 QIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMN 575

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-Q 444
            R+V++W +MI GY QNGQ+ EA+ L+  ++    +P+S T  +VLSAC      + G Q
Sbjct: 576 NRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQ 635

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            H  +I ++   + S+ +   +I +  RS  V  A  +   +  +  ++ W++++   A 
Sbjct: 636 IHCKAIRSLQEQSVSVSN--AIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQ 693

Query: 505 KGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACG 540
            G    GE A     E+  +   P +I    + +AC 
Sbjct: 694 HG---LGEQAVVLFEEMVRVGVKPDHITYVGVLSACA 727


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/659 (36%), Positives = 379/659 (57%), Gaps = 14/659 (2%)

Query: 49  MDLNFYEPN-TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL----LSAHARS 103
           ++L+   P  T FL  ++L  Y     L   R +  ++ L D+   ++L    + A+A  
Sbjct: 31  LELDQKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASL 87

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
             V   R +FD++P R+ +  N  I  + N GF  E ++VF  M      P  YT    L
Sbjct: 88  KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC+    +  G++IHG      L   +FV N L  MY K G + +AR + D M+ R++V
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RIDDAGRLFH 281
           SWN ++ GY +N +    +++ +EM+ + ++ D  T++++L A   T    +     +F 
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF 267

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            + +K  V W  MI  Y +N    +A+ L++ M ++   PD  SI+SV+ +C   ++L  
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +HG      +  +LL+ +ALIDMY KCG  + A  VF  M +R+VVSW +MI+ Y  
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G+  +A+AL+ KL    L PDS  FV+ L+AC HA L E G++ F  ++  + ITP L+
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           H ACM++LLGR+  V +A   I+ +  +PN  +W  LL  C +  D   G +AA  LF+L
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
            P  +G Y++LSN+YA  GRWE+V +IR+ MKSK +KK    S +E++  +H F+  DR+
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI--- 638
           HP+++ IY EL  L+KK++E G+ P+++  LHD +EE+K   +  HSEKLA+ + L+   
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

Query: 639 -KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            ++      IRI KN+R+CGDCH+  K  S I  R II+RD+NRFH F  G CSC D W
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 19/174 (10%)

Query: 14  LYSRGQAATEE----AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           LYSR +A   E    + T ++  C   + + L K++  +++     PN   L N L+  Y
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL-LLENALIDMY 354

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYN 125
           AK G L  ARD+F+ M  RD++SW A++SA+  SG   D  ALF K+     + DS+++ 
Sbjct: 355 AKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFV 414

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDL--RRGK 176
           T +A  ++ G   E    F  M       TD+  ++  L   A ++DL  R GK
Sbjct: 415 TTLAACSHAGLLEEGRSCFKLM-------TDHYKITPRLEHLACMVDLLGRAGK 461



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 113/262 (43%), Gaps = 30/262 (11%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS----WNALL 97
           A  L S M+ + +EP+   + + +L     +  L   + +   +  + +I      NAL+
Sbjct: 293 AVELYSRMEADGFEPDAVSITS-VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
             +A+ G ++  R +F+ M  RD VS+   I+ +   G   +A+ +FS++Q     P   
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 158 THVSALNACAQLLDLRRGKQI------HGKIV--VGNLGGNVFVRNALTDMYAKGGEIDK 209
             V+ L AC+    L  G+        H KI   + +L         + D+  + G++ +
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLA-------CMVDLLGRAGKVKE 464

Query: 210 A-RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNIL 264
           A R++ D     N   W  ++     +      I L    +L  L P++    V +SNI 
Sbjct: 465 AYRFIQDMSMEPNERVWGALLGACRVHSDTD--IGLLAADKLFQLAPEQSGYYVLLSNIY 522

Query: 265 GACFQTGRIDDAGRLFHVIKEK 286
               + GR ++   + +++K K
Sbjct: 523 A---KAGRWEEVTNIRNIMKSK 541


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/640 (38%), Positives = 363/640 (56%), Gaps = 38/640 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +++    +  R +    P R+ VS+ + I+G A  G    AL  F  M+++   
Sbjct: 46  NYLINMYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVV 105

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P D+T   A  A A L     GKQIH   V      +VFV  +  DMY K    D AR L
Sbjct: 106 PNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKL 165

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD +  RNL +WN  IS  + +G+P++ I+ F E + +  +P+ +T    L AC      
Sbjct: 166 FDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHL 225

Query: 268 --------------FQT------GRIDDAGR---------LFHVIKEKDNVCWTTMIVGY 298
                         F T      G ID  G+         +F  +  K+ V W +++  Y
Sbjct: 226 NLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAY 285

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN ++E A +L+     + V    F ISSV+S+CA +A L  G+ +H  AV   V+  +
Sbjct: 286 VQNHEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI 345

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V SAL+DMY KCG  +D+   F+ MP +N+V+ NS+I GYA  GQ   ALAL++++   
Sbjct: 346 FVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPR 405

Query: 419 NL--KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
                P+  TFVS+LSAC  A   E G   FDS+ + +GI P  +HY+C++++LGR+  V
Sbjct: 406 GCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 465

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A + IK +P +P   +W  L + C M G  + G +AA +LF+L+P ++G +++LSN +
Sbjct: 466 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTF 525

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA GRW +  ++R  +K   +KK A YSWI + N+VH F ++DR+H   + I   L+KL 
Sbjct: 526 AAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLR 585

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            +++ AG+ P+ KL L+D +EEEK   + +HSEKLALA+ L+  P  V PIRI KN+R+C
Sbjct: 586 NEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSV-PIRITKNLRIC 644

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH F KF S  + R II+RD+NRFH F  G CSCKD W
Sbjct: 645 GDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/715 (35%), Positives = 406/715 (56%), Gaps = 49/715 (6%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           + Q +  C    D+   K L + + +  + P +T+L N  L  Y+K  +L  AR +FD  
Sbjct: 11  FRQFLKTCIAHRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
              ++ S+N L+SA+A+   V+    LFD+MP  DSVSYNT IA +A +G ++ A Q+F 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M++   +   +T    + AC   + L R  Q+H   VV  L   V V NAL   Y+K G
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIR--QLHALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 206 EIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            + +AR +F  ++ +R+ VSWN M+  Y+++ +  K ++L+ EM + GL  D  T++++L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 265 GAC--------------------------FQTGRID----------DAGRLFHVIKEKDN 288
            A                             +G ID          D  ++F  I   D 
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDL 307

Query: 289 VCWTTMIVGYT-QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           V W TMI GY+      ++AL  F ++     RPD  S+  V+S+C+ ++S   G+ VHG
Sbjct: 308 VLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHG 367

Query: 348 KAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
            A+ L +  + + V++ALI MY KCG   DA T+F+ MP  N VS+NSMI GYAQ+G   
Sbjct: 368 LALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGF 427

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           ++L L+ ++L+    P + TF+SVL+AC H    E G+ +F+ +    GI P   H++CM
Sbjct: 428 QSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSCM 487

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           I+LLGR+  + +A  LI+++P  P    WS LL  C + G+++    AA  L +L+P+NA
Sbjct: 488 IDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAANRLLQLDPLNA 547

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
            PY+ML+N+Y+  GR +D AS+R  M+ + VKK    SWIE++ ++H FV+ED  HP  +
Sbjct: 548 APYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMIK 607

Query: 587 IIYEELSKLIKKLQEAGFSPNTK--LVLHDT---QEEEKVKSICYHSEKLALAYCLIKKP 641
            I E L ++++K+++ G++P  +  LV  D    Q EE+++ + +HSEKLA+++ L+   
Sbjct: 608 KIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELR-LGHHSEKLAVSFGLMSTR 666

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G  PI + KN+R+C DCH  +K+ S+++ R I +RDS+RFH F  G CSC   W
Sbjct: 667 EG-EPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/643 (37%), Positives = 366/643 (56%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+   A++G +  +R +FD +  R  V +   I  +A  G+S EA+++F  M 
Sbjct: 188 DVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDML 247

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GG 205
           ++ F+P  YT  S L+AC +L   R G+Q+H   +   L  +  V   L DMYAK   G 
Sbjct: 248 ENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQ 307

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            +  AR +F+RM   N+++W  ++SGY++ G Q  + + LF +M   G+ P+ +T S++L
Sbjct: 308 SLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSML 367

Query: 265 GACFQTGRIDDAGRLFHVIKEKDN-----VCWTTMIVGYTQNGKEEDA-----------L 308
            AC   G   D+GR  H    K N     V    ++  Y ++G  E+A           +
Sbjct: 368 KACANLGD-QDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNM 426

Query: 309 ILFNEMLSEDVRPDK---------------FSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           + F+  L  D R +                F+  S++S+ A +  L  GQ +H  ++  G
Sbjct: 427 VSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAG 486

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D  + ++L+ MY +CG   DA  VF+ M   NV+SW SMI+G A++G    AL L+ 
Sbjct: 487 FGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFH 546

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            ++   +KP+  T+++VLSAC HA L + G+ HF  +   HG+ P ++HYACM++LLGRS
Sbjct: 547 DMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRS 606

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V+ A+D I  +P + ++L+W TLL  C    ++  GE+AA H+ +LEP +  PY++LS
Sbjct: 607 GLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLS 666

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G W+ VA IRS M+ KN+ K    SW+ +DN +H+F + D +HP+ E IY +L 
Sbjct: 667 NLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLE 726

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            LI++++  G+ P+T +VLHD  +E K   +  HSEK+A+A+ LI       PIRI KN+
Sbjct: 727 TLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNL 786

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH  +K+ S   GR IILRDSNRFH    G CSC + W
Sbjct: 787 RVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 142/555 (25%), Positives = 250/555 (45%), Gaps = 119/555 (21%)

Query: 38  DVELAKRLQSHM--DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP--LRDIISW 93
           D+ L + LQ H+    +  E +   + N LL  Y+K   +  AR +FD MP  LRD++SW
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAV-VANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSW 120

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            A+ S  +R+G+                                 EAL++F    ++   
Sbjct: 121 TAMASCLSRNGA-------------------------------EAEALRLFGETLEEGLL 149

Query: 154 PTDYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           P  +T  +A  AC  ++L  L  G  +     +G  G +V V  AL DM+AK G++   R
Sbjct: 150 PNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMR 209

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD +  R +V W L+I+ Y ++G   + ++LF +M   G  PD+ T+S++L AC + G
Sbjct: 210 RVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELG 269

Query: 272 --------------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
                                                  + +A  +F+ + + + + WT 
Sbjct: 270 SFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTA 329

Query: 294 MIVGYTQNGKEED-ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           ++ GY Q G +++  +ILF +ML+E +RP+  + SS++ +CA L     G+ +H   V  
Sbjct: 330 LLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKS 389

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG--QDLEALA 410
            + D  +V +AL+ MY + G  ++A   F+ +  +N+VS++  ++G  ++   QD +   
Sbjct: 390 NLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQ--- 446

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHG----ITPSL----- 460
               + +  L   +FTF S++SA     +  +GQ  H  S+ A  G    I  SL     
Sbjct: 447 ----IERMELGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYS 502

Query: 461 ----------------DH----YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWST 497
                           DH    +  MI+ L +     +A++L   +     KPN + +  
Sbjct: 503 RCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIA 562

Query: 498 LLSVCAMKGDIKHGE 512
           +LS C+  G +K G+
Sbjct: 563 VLSACSHAGLVKEGK 577



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 193/447 (43%), Gaps = 87/447 (19%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS---GKLFYARDLFDKMPLRD 89
           CT +    L ++L S + L     + + +   L+  YAKS     L  AR++F++MP  +
Sbjct: 265 CTELGSFRLGQQLHS-LALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHN 323

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +++W ALLS + + GS QD                              + + +F +M  
Sbjct: 324 VMAWTALLSGYVQRGS-QD-----------------------------NQVMILFCKMLN 353

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +   P   T+ S L ACA L D   G+QIH   V  NL     V NAL  MYA+ G I++
Sbjct: 354 EGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEE 413

Query: 210 ARWLFDRMNNRNLVSWN---------------------LMIS--------------GYLK 234
           AR  FD++  +N+VS++                     L IS              G L 
Sbjct: 414 ARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLT 473

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
            GQ    + L       G   D    ++++    + G + DA ++F  + + + + WT+M
Sbjct: 474 KGQRLHALSLKA-----GFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSM 528

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-- 352
           I G  ++G    AL LF++M++  V+P+  +  +V+S+C+     + G V  GK      
Sbjct: 529 ISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACS-----HAGLVKEGKEHFRMM 583

Query: 353 ----GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDL 406
               G+   +   + ++D+  + G+ +DA    N MP + + + W +++      N  D+
Sbjct: 584 QKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDI 643

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSA 433
             +A    +  E   P  +  +S L A
Sbjct: 644 GEIAANHVIQLEPQDPAPYVLLSNLYA 670



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 130/273 (47%), Gaps = 16/273 (5%)

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH--GQ 343
           +D V WT M    ++NG E +AL LF E L E + P+ F++ +   +C   + L+H  G 
Sbjct: 115 RDLVSWTAMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFA-SELFHLAGG 173

Query: 344 VVHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
            V G    LG    D+ V  ALIDM+ K G       VF+ +  R VV W  +I  YAQ+
Sbjct: 174 AVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQS 233

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA+ L+  +L+   +PD +T  S+LSAC     F  GQ    S++   G+      
Sbjct: 234 GYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQ-QLHSLALRLGLESDSCV 292

Query: 463 YACMINLLGRSSD---VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
              ++++  +S +   +  A ++   +P K N + W+ LLS    +G   +  M    + 
Sbjct: 293 SCGLVDMYAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLSGYVQRGSQDNQVM----IL 347

Query: 520 ELEPINAG---PYIMLSNMYAACGRWEDVASIR 549
             + +N G    +I  S+M  AC    D  S R
Sbjct: 348 FCKMLNEGIRPNHITYSSMLKACANLGDQDSGR 380


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/636 (36%), Positives = 365/636 (57%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ +A+ G V++ R +F  M  RD VS+NT +AG    G   EALQ+F   +     
Sbjct: 244 NSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITM 303

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            T  T+ + +  CA +  L   +Q+H  ++         V  AL D Y+K G++  A  +
Sbjct: 304 LTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDI 363

Query: 214 FDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-- 270
           F  M+ ++N+VSW  MI+G ++NG       LF  M+  G+ P++ T S IL A   +  
Sbjct: 364 FLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLP 423

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                           ++A  +F +I +KD V W+ M+  Y Q 
Sbjct: 424 PQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQA 483

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDDDLLV 360
           G  + A  +F +M    ++P++F+ISSV+ +CA   A +  G+  H  ++     D L V
Sbjct: 484 GDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCV 543

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           SSAL+ MY + G  + A  +F     R++VSWNSM++GYAQ+G   +AL ++ ++  E +
Sbjct: 544 SSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGI 603

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           + D  TF+SV+  C HA L E GQ +FDS++  +GITP+++HYACM++L  R+  +D+A+
Sbjct: 604 EMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAM 663

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            LI+ +      ++W TLL  C +  +++ G++AA  L  LEP ++  Y++LSN+Y+A G
Sbjct: 664 SLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAG 723

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +W++   +R  M +K VKK A  SWI+I NKVH F++ D++HP +E IY +L  +  KL+
Sbjct: 724 KWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLK 783

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ P+T   LH+  EE+K   +  HSE+LALA+ LI  P G  P+ I KN+RVCGDCH
Sbjct: 784 QEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPG-APLHIFKNLRVCGDCH 842

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I  R I++RD +RFHHF  G CSC D W
Sbjct: 843 TVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 221/454 (48%), Gaps = 41/454 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  + +  SV D R +F+ MP R+ V++ + + G+   G   + +++F RM+
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P   T  S L+  A    +  G+++H + V       VFV N+L +MYAK G ++
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE--------------------- 247
           +AR +F  M  R++VSWN +++G + NG   + + LF +                     
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 248 -MQLLGL-------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-WT 292
            ++ LGL             +     ++ ++ A  + G++ +A  +F ++    NV  WT
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI G  QNG    A  LF+ M  + V P+ F+ S++++  A +ASL     +H + +  
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILT--ASVASL--PPQIHAQVIKT 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
             +   +V +AL+  Y K   T++A ++F M+  ++VVSW++M+  YAQ G    A  ++
Sbjct: 434 NYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIF 493

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            K+    LKP+ FT  SV+ AC            F +IS  H    +L   + ++++  R
Sbjct: 494 IKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR 553

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              ++ A  + +    + + + W+++LS  A  G
Sbjct: 554 KGSIESAQCIFERQTDR-DLVSWNSMLSGYAQHG 586



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 212/445 (47%), Gaps = 64/445 (14%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF---SRMQKDRFEPTDYTHVSALNAC 166
           R  FD++P R+++ +  A+   A +G   +AL  F    R    R        V  L  C
Sbjct: 58  RQAFDEIPHRNTLDH--ALFDHARRGSVHQALDHFLDVHRCHGGRVGGGAL--VGVLKVC 113

Query: 167 AQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
             + D   GKQ+HG  +  G+  G+V V  +L DMY K   +   R +F+ M  RN+V+W
Sbjct: 114 GSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTW 173

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--------------------- 264
             +++GY+++G     ++LF  M+  G+ P+ VT +++L                     
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 265 -GAC-------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
            G C              + G +++A  +F  ++ +D V W T++ G   NG + +AL L
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQL 293

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F++  S      + + ++V+  CA +  L   + +H   +  G      V +AL+D Y K
Sbjct: 294 FHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSK 353

Query: 371 CGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            G   +A  +F +M  ++NVVSW +MING  QNG    A AL+ ++ ++ + P+ FT+ +
Sbjct: 354 AGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYST 413

Query: 430 VLSAC-------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +L+A        +HA +    + +++  S V   T  L  Y+ + N        ++A+ +
Sbjct: 414 ILTASVASLPPQIHAQVI---KTNYECTSIVG--TALLASYSKLCN-------TEEALSI 461

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGD 507
            K +  K + + WS +L+  A  GD
Sbjct: 462 FKMIDQK-DVVSWSAMLTCYAQAGD 485



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 62/347 (17%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE-----------------MQLLG 252
           AR  FD + +RN +   L    + + G   + +D F +                 +++ G
Sbjct: 57  ARQAFDEIPHRNTLDHALF--DHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 253 LNPDEVTVSNILGACFQTGR--------------------IDDAGRLFHVIKEKDNVCWT 292
             PD V    + G C + G                     + D  ++F  + +++ V WT
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWT 174

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +++ GY Q+G   D + LF  M +E V P+  + +SV+S  A    +  G+ VH ++V  
Sbjct: 175 SLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKF 234

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G    + V ++L++MY KCG+ ++A  VF  M TR++VSWN+++ G   NG DLEAL L+
Sbjct: 235 GCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLF 294

Query: 413 DKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLD 461
                        T+ +V+  C           LH+ + +RG + + ++     +T  +D
Sbjct: 295 HDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV-----MTALMD 349

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            Y+       ++  +  A+D+   +    N + W+ +++ C   GD+
Sbjct: 350 AYS-------KAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDV 389


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 367/639 (57%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRF 152
           N+L+  +++ G + + + LFDK   +++VS+NT I G   KG+  EA  +F  MQ ++  
Sbjct: 173 NSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDI 232

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           E  + T ++ L AC ++  LR  K++HG  +      +  V N     YAK G +  A  
Sbjct: 233 EVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAER 292

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +F  M  + + SWN +I G  +NG P+K ++L+ +M   GL PD  T+ ++L A      
Sbjct: 293 VFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKS 352

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            G    A  LF  ++EK +V W  MI G
Sbjct: 353 LRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG 412

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y+QNG  EDALILF +++S+  +P   ++ SV+ +C++ ++L  G+  H  A+   + +D
Sbjct: 413 YSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMED 472

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V+ + IDMY K G   ++ +VF+ +  +++ SWN++I  Y  +G   E++ L++++ +
Sbjct: 473 VFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRK 532

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
               PD FTF+ +L+ C HA L E G  +F+ +   HGI P L+HYAC++++LGR+  +D
Sbjct: 533 VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLD 592

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            A+ L+  +P +P+S +WS+LLS C   G+++ G++ A  L ELEP N   Y+ LSN+YA
Sbjct: 593 DALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYA 652

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             GRW+DV  +R  +K   ++K A  SWIE+  KVH FV+ D   P+++ +     KL K
Sbjct: 653 GSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEK 712

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+ + G+ PNT  VLHD  EE+K++ +  HSEKLA+ + L+    G T +RI KN+R+C 
Sbjct: 713 KMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTT-LRIFKNLRICV 771

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S++ GR II+RD+ RFHHF  G CSC D W
Sbjct: 772 DCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 166/345 (48%), Gaps = 39/345 (11%)

Query: 139 EALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           +A+ +F ++  D  F   ++T    + AC   LD   G+ IHG ++   L  +VFV NAL
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNAL 72

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL--LGLNP 255
             MY K G +D A  +F  M  RNLVSWN +ISG+ +NG  K C D+  EM     GL P
Sbjct: 73  IAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLP 132

Query: 256 DEVTVSNILGACF-----------------------------------QTGRIDDAGRLF 280
           D  T+  +L  C                                    + G + +A  LF
Sbjct: 133 DIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLF 192

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASL 339
                K+ V W TMI G    G   +A  LF EM + ED+  ++ ++ +++ +C +++ L
Sbjct: 193 DKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQL 252

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
              + +HG ++  G   D LV++  +  Y KCG+   A  VF  M T+ V SWN++I G 
Sbjct: 253 RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGC 312

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           AQNG   +AL LY ++    L PD FT  S+L A  H      G+
Sbjct: 313 AQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGK 357



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 187/422 (44%), Gaps = 77/422 (18%)

Query: 44  RLQSHMDLNFYEPNTTFLHNRLLH-----FYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           +L+S  +L+ Y     F ++ L+       YAK G L  A  +F  M  + + SWNAL+ 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI- 309

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                          G A  G  R+AL ++ +M      P  +T
Sbjct: 310 ------------------------------GGCAQNGDPRKALNLYIQMTYSGLVPDWFT 339

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
             S L A A L  LR GK++HG ++   L  + F+  +L  +Y   GE   AR LFD M 
Sbjct: 340 IGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGME 399

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ--------- 269
            ++ VSWN MISGY +NG P+  + LF+++   G  P ++ V ++LGAC Q         
Sbjct: 400 EKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKE 459

Query: 270 --------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                     +G I ++  +F  +K KD   W  +I  Y  +G 
Sbjct: 460 THCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGD 519

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSS 362
            E+++ LF  M      PD F+   +++ C+    +  G +  +      G++  L   +
Sbjct: 520 GEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYA 579

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLE-ALALYDKLLQENL 420
            ++DM  + G  DDA  + + MP + +   W+S+++ + +N  +LE    + +KLL+  L
Sbjct: 580 CVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLS-FCRNFGELEIGQIVAEKLLE--L 636

Query: 421 KP 422
           +P
Sbjct: 637 EP 638



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/334 (30%), Positives = 160/334 (47%), Gaps = 46/334 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           +F+   LL  Y   G+   AR LFD M  +  +SWNA++S ++++G  +D          
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPED---------- 421

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                                AL +F ++  D F+P+D   VS L AC+Q   LR GK+ 
Sbjct: 422 ---------------------ALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET 460

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +VFV  +  DMYAK G I ++R +FD + N++L SWN +I+ Y  +G  
Sbjct: 461 HCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDG 520

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL------FHVIKEK--DNVC 290
           ++ I+LF+ M+ +G  PD  T   IL  C   G +++  +       FH I+ K     C
Sbjct: 521 EESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYAC 580

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
              M+    + G+ +DAL L +EM  +   PD    SS++S C     L  GQ+V  K +
Sbjct: 581 VMDML---GRAGRLDDALRLVHEMPEQ---PDSRVWSSLLSFCRNFGELEIGQIVAEKLL 634

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
            L    ++    +L ++Y   G  DD   V  M+
Sbjct: 635 ELE-PKNVENYVSLSNLYAGSGRWDDVRRVRQMI 667



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 180/393 (45%), Gaps = 62/393 (15%)

Query: 257 EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           +V V N L A + + G +D A ++FH +  ++ V W ++I G+++NG  +D   +  EM+
Sbjct: 65  DVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMM 124

Query: 316 S--EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           +  E + PD  ++ +V+  CA+   +  G  +HG AV LG+ +D+ V+++L+DMY KCG 
Sbjct: 125 AGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGY 184

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQENLKPDSFTFVSVLS 432
             +A  +F+    +N VSWN+MI G    G   EA  L+ ++ +QE+++ +  T +++L 
Sbjct: 185 LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILP 244

Query: 433 ACLHADLFERGQNHFDSISAVHGI-------------------------------TPSLD 461
           ACL      R        S  HG                                T +++
Sbjct: 245 ACLEISQL-RSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVN 303

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGE----MA 514
            +  +I    ++ D  KA++L   + +    P+     +LL   A    +++G+      
Sbjct: 304 SWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFV 363

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
            RH  E++       I L ++Y  CG       +   M+ K     ++ SW    N +  
Sbjct: 364 LRHGLEIDSFIG---ISLLSLYIHCGESSSARLLFDGMEEK-----SSVSW----NAMIS 411

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
             S++   PE  +I      L +KL   GF P+
Sbjct: 412 GYSQNGL-PEDALI------LFRKLVSDGFQPS 437



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 127/259 (49%), Gaps = 6/259 (2%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           M V   +N    DA+ +F +++++ +   D F+   V+ +C        G+V+HG  + +
Sbjct: 1   MHVAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKM 60

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  D+ V +ALI MY K G  D A  VF+ MP RN+VSWNS+I+G+++NG   +   + 
Sbjct: 61  GLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDML 120

Query: 413 DKLL--QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
            +++  +E L PD  T V+VL  C      + G      ++   G++  +     ++++ 
Sbjct: 121 VEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGI-RIHGLAVKLGLSEDVRVNNSLVDMY 179

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
            +   + +A  L     ++ N++ W+T++     KG I       R +   E I      
Sbjct: 180 SKCGYLTEAQMLFDK-NNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVT 238

Query: 531 MLSNMYAACGRWEDVASIR 549
           +L N+  AC     + S++
Sbjct: 239 VL-NILPACLEISQLRSLK 256



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 20/221 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+    + +  +A+SG +++ R++FD +  +D  S+N  IA +   G   E++++F R
Sbjct: 470 MEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFER 529

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG---NVFVRNALTDMYAK 203
           M+K    P  +T +  L  C+    +  G +   ++   N  G    +     + DM  +
Sbjct: 530 MRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEM--QNFHGIEPKLEHYACVMDMLGR 587

Query: 204 GGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----DEV 258
            G +D A  L   M  + +   W+ ++S + +N    +   +  E +LL L P    + V
Sbjct: 588 AGRLDDALRLVHEMPEQPDSRVWSSLLS-FCRNFGELEIGQIVAE-KLLELEPKNVENYV 645

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIK----EKDNVC-WTTM 294
           ++SN+      +GR DD  R+  +IK    +KD  C W  +
Sbjct: 646 SLSNLYAG---SGRWDDVRRVRQMIKDIGLQKDAGCSWIEL 683


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 237/644 (36%), Positives = 362/644 (56%), Gaps = 37/644 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            DI+    L+  +A+ G  +  + LF  +  RD V+++  IA     G+  EAL +F  MQ
Sbjct: 363  DILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQ 422

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              + +P   T +S L ACA L  L+ GK IH   V  ++  ++    AL  MYAK G   
Sbjct: 423  NQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFT 482

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
             A   F+RM++R++V+WN +I+GY + G P   ID+F +++L  +NPD  T+  ++ AC 
Sbjct: 483  AALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542

Query: 268  -------------------FQT---------------GRIDDAGRLFHVIK-EKDNVCWT 292
                               F++               G +  A  LF+     KD V W 
Sbjct: 543  LLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWN 602

Query: 293  TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
             +I  Y QNG  ++A+  F++M  E+  P+  +  SV+ + A LA+   G   H   + +
Sbjct: 603  VIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQM 662

Query: 353  GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            G   + LV ++LIDMY KCG    +  +FN M  ++ VSWN+M++GYA +G    A+AL+
Sbjct: 663  GFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALF 722

Query: 413  DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
              + +  ++ DS +FVSVLSAC H  L E G+  F S+S  + I P L+HYACM++LLGR
Sbjct: 723  SLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGR 782

Query: 473  SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
            +   D+ +  IK +P +P++ +W  LL  C M  ++K GE+A  HL +LEP N   +++L
Sbjct: 783  AGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVL 842

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
            S++YA  GRW D    RS M    +KK    SW+E+ NKVH F   D++HP+ E ++   
Sbjct: 843  SSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLW 902

Query: 593  SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            + L++K+++ G+ P+   VL + +EE+K   +  HSE+LA+ + L+  P G T I+I+KN
Sbjct: 903  NTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST-IQIVKN 961

Query: 653  IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +RVC DCH   KF S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 962  LRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 1005



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 251/516 (48%), Gaps = 75/516 (14%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN 94
           +++++EL + +  ++   F    ++ + N L+  Y+K G +  AR +FD+M  +D +SW 
Sbjct: 242 KLSNIELCRSIHGYV---FRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWG 298

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            +++ +A +G   ++  LFDKM +  +V  N   A                         
Sbjct: 299 TMMAGYAHNGCFVEVLELFDKMKL-GNVRINKVSA------------------------- 332

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                VSA  A A+ +DL +GK+IHG  +   +  ++ V   L  MYAK GE +KA+ LF
Sbjct: 333 -----VSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLF 387

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
             +  R+LV+W+ +I+  ++ G P++ + LFQEMQ   + P+ VT+ +IL AC       
Sbjct: 388 WGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLK 447

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + G    A   F+ +  +D V W ++I GY 
Sbjct: 448 LGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYA 507

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q G   +A+ +F ++    + PD  ++  VV +CA L  L  G  +HG  V LG + D  
Sbjct: 508 QIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCH 567

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           V +ALIDMY KCG    A  +FN    T++ V+WN +I  Y QNG   EA++ + ++  E
Sbjct: 568 VKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLE 627

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           N  P+S TFVSVL A  +   F  G      I  +  ++ +L   + +I++  +   +  
Sbjct: 628 NFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLXY 686

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           +  L   + HK +++ W+ +LS  A+ G   HG+ A
Sbjct: 687 SEKLFNEMDHK-DTVSWNAMLSGYAVHG---HGDRA 718



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 141/492 (28%), Positives = 239/492 (48%), Gaps = 51/492 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD+     L+  +++ G ++  R +FDKMP RD V++N  IAG +      EA+  F  M
Sbjct: 162 RDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSM 221

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    EP+  + ++      +L ++   + IHG +   +    V   N L D+Y+K G++
Sbjct: 222 QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSKCGDV 279

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-VSNILGA 266
           D AR +FD+M +++ VSW  M++GY  NG   + ++LF +M+L  +  ++V+ VS  L A
Sbjct: 280 DVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAA 339

Query: 267 --------------CFQTGRIDD--------------------AGRLFHVIKEKDNVCWT 292
                         C    RID                     A +LF  ++ +D V W+
Sbjct: 340 AETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWS 399

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I    Q G  E+AL LF EM ++ ++P++ ++ S++ +CA L+ L  G+ +H   V  
Sbjct: 400 AIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKA 459

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            +D DL   +AL+ MY KCG    A T FN M +R++V+WNS+INGYAQ G    A+ ++
Sbjct: 460 DMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMF 519

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CM 466
            KL    + PD+ T V V+ AC          N  D  + +HG+   L   +       +
Sbjct: 520 YKLRLSAINPDAGTMVGVVPACALL-------NDLDQGTCIHGLIVKLGFESDCHVKNAL 572

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           I++  +   +  A  L        + + W+ +++     G  K   +++ H   LE  + 
Sbjct: 573 IDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEA-ISSFHQMRLENFHP 631

Query: 527 GPYIMLSNMYAA 538
                +S + AA
Sbjct: 632 NSVTFVSVLPAA 643



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 141/487 (28%), Positives = 241/487 (49%), Gaps = 78/487 (16%)

Query: 1   MKAKHKLRQA---IDTLYSRGQAATEEAYT------QLVLDCTRVNDVELAKRLQSHMDL 51
           M  KH+LR++   I T  S   + +   YT      +L+  C  +N +    ++ + + +
Sbjct: 1   MCIKHQLRRSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPL---LQIHAQIIV 57

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           + ++ + +  H  L++ Y+   K   AR +FD  P    I WN+++ A+ RS        
Sbjct: 58  SGFKHHHSITH--LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSK------- 108

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
                       YN             EAL+++  M +   EP  YT    L AC   L+
Sbjct: 109 -----------QYN-------------EALEMYYCMVEKGLEPDKYTFTFVLKACTGALN 144

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L+ G   HG+I    L  +VF+   L DMY+K G++ +AR +FD+M  R++V+WN MI+G
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAG 204

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-GAC----------------------- 267
             ++  P + +D F+ MQL+G+ P  V++ N+  G C                       
Sbjct: 205 LSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSA 264

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G +D A R+F  + ++D+V W TM+ GY  NG   + L LF++M   +
Sbjct: 265 VSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN 324

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           VR +K S  S   + A+   L  G+ +HG A+   +D D+LV++ L+ MY KCG T+ A 
Sbjct: 325 VRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F  +  R++V+W+++I    Q G   EAL+L+ ++  + +KP+  T +S+L AC    
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLS 444

Query: 439 LFERGQN 445
           L + G++
Sbjct: 445 LLKLGKS 451



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 88/479 (18%)

Query: 155 TDYTHVS-ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           T+Y H    L++C  L  L    QIH +I+V     +  + + L ++Y+   + D AR +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLL---QIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSV 85

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           FD   N + + WN MI  Y ++ Q  + ++++  M   GL PD+ T + +L AC      
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNL 145

Query: 271 -------GRIDDAG-------------------------RLFHVIKEKDNVCWTTMIVGY 298
                  G ID  G                          +F  + ++D V W  MI G 
Sbjct: 146 QEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGL 205

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+    +A+  F  M    V P   S+ ++     KL+++   + +HG   V   D   
Sbjct: 206 SQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHG--YVFRRDFSS 263

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS+ LID+Y KCG  D A  VF+ M  ++ VSW +M+ GYA NG  +E L L+DK+   
Sbjct: 264 AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLG 323

Query: 419 NLKPDSFTFVSVLSACLHADLFERG--------QNHFDSISAVHGITPSLDHYA------ 464
           N++ +  + VS   A       E+G        Q   DS   V   TP +  YA      
Sbjct: 324 NVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILV--ATPLMVMYAKCGETE 381

Query: 465 ------------------CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCA 503
                              +I  L ++   ++A+ L + + +   KPN +   ++L  CA
Sbjct: 382 KAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACA 441

Query: 504 MKGDIKHGEMAARHLFELEP-----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
               +K G+  + H F ++      ++ G    L +MYA CG +    +  + M S+++
Sbjct: 442 DLSLLKLGK--SIHCFTVKADMDSDLSTG--TALVSMYAKCGFFTAALTTFNRMSSRDI 496



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           + T + N L+  YAK G+L Y+  LF++M  +D +SWNA+LS +A  G      ALF  M
Sbjct: 666 SNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM 725

Query: 117 PIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                  DSVS+ + ++   + G   E  ++F  M        D  H + +
Sbjct: 726 QESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACM 776



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L + +  N+L+  +A+ G +     LF++M  +D+VS+N  ++G+A  G    A+ +FS 
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSL 724

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           MQ+ + +    + VS L+AC     +  G++I
Sbjct: 725 MQESQVQIDSVSFVSVLSACRHXGLVEEGRKI 756


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 379/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++   NAL++ +AR G + +   +F  M   D++S+N+ ++GF   G   EALQ +  M+
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P     +S + A A+  +   G QIH   +   L  ++ V N+L DMYAK   + 
Sbjct: 376 DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 435

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
               +FD+M ++++VSW  +I+G+ +NG   + ++LF+E+QL G++ D + +S+IL AC 
Sbjct: 436 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 495

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G +D A R+F +I+ KD V WT+M
Sbjct: 496 GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSM 555

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I  Y  NG   +AL LF+ M    V PD  S+ S++S+ A L++L  G+ +HG  +  G 
Sbjct: 556 ISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF 615

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +  ++S L+DMY +CG  + +  VFN +  +++V W SMIN Y  +G    A+ L+ +
Sbjct: 616 VLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 675

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  E++ PD   FV+VL AC H+ L   G+   +S+   + + P  +HYAC+++LLGR++
Sbjct: 676 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRAN 735

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   +K +  +P + +W  LL  C +  + + GE+AA+ L E++P N G Y+++SN
Sbjct: 736 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 795

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +Y+A  RW+DV  +R  MK+  +KK    SWIE+ NKVH F++ D++HP++  IY +LS+
Sbjct: 796 VYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 855

Query: 595 LIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           + +KL +E G+   TK VLH+ +EEEKV+ +  HSE+LA+AY ++  P G + +RI KN+
Sbjct: 856 ITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGAS-LRITKNL 914

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH F K  S    R +++RD+NRFHHF GG CSC D W
Sbjct: 915 RVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 161/618 (26%), Positives = 272/618 (44%), Gaps = 114/618 (18%)

Query: 16  SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           S  Q + +EAY+ ++  C     +   +++ +HM  +    N+ FL  RL+  Y K G L
Sbjct: 71  SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCL 130

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
                                           D   LFD MP +   ++N  I  +   G
Sbjct: 131 V-------------------------------DAEKLFDGMPHKTIFTWNAMIGAYVTNG 159

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
               +L+++  M+         T    L AC  L D R G ++HG  +       VFV N
Sbjct: 160 EPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVAN 219

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           ++  MY K  +++ AR LFDRM  + ++VSWN MIS Y  NGQ  + + LF EMQ   L 
Sbjct: 220 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA 279

Query: 255 PDEVTVSNILGACFQT-----------------------------------GRIDDAGRL 279
           P+  T    L AC  +                                   G++ +A  +
Sbjct: 280 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 339

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F+ + + D + W +M+ G+ QNG   +AL  ++EM     +PD  ++ S++++ A+  + 
Sbjct: 340 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 399

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            HG  +H  A+  G+D DL V ++L+DMY K         +F+ MP ++VVSW ++I G+
Sbjct: 400 LHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 459

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHF- 447
           AQNG    AL L+ ++  E +  D     S+L AC           +H+ +  +G +   
Sbjct: 460 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV 519

Query: 448 --DSISAVHGITPSLDHYACMINLL------------------GRSSDVDKAVDLIKSLP 487
             + I  V+G   ++D+ A M  L+                  G +++  +   L+K   
Sbjct: 520 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 579

Query: 488 HKPNSLIWSTLLSVCAM--------KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            +P+S+   +L+S+ +         KG   HG +  R  F LE   A     L +MYA C
Sbjct: 580 VEPDSI---SLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSLAST---LVDMYARC 632

Query: 540 GRWEDVASIRSSMKSKNV 557
           G  E   ++ + +++K++
Sbjct: 633 GTLEKSRNVFNFIRNKDL 650



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 210/457 (45%), Gaps = 46/457 (10%)

Query: 134 KGFSREALQ----VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LG 188
           +G   EA Q    +F+     +F   D  + S L  C     L  G+Q+H  ++  N L 
Sbjct: 53  RGSVNEAFQSLTDLFANQSPSQFS-LDEAYSSVLELCGSKKALSEGQQVHAHMITSNALF 111

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VF+   L  MY K G +  A  LFD M ++ + +WN MI  Y+ NG+P   ++L++EM
Sbjct: 112 NSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM 171

Query: 249 QLLGLNPDEVTVSNILGAC-----------------------------------FQTGRI 273
           ++ G+  D  T   IL AC                                    +   +
Sbjct: 172 RVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 231

Query: 274 DDAGRLFHVIKEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + A +LF  + EK++V  W +MI  Y+ NG+  +AL LF EM    + P+ ++  + + +
Sbjct: 232 NGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQA 291

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C   + +  G  +H   +      ++ V++ALI MY + G   +A  +F  M   + +SW
Sbjct: 292 CEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISW 351

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NSM++G+ QNG   EAL  Y ++     KPD    +S+++A   +     G     + + 
Sbjct: 352 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGM-QIHAYAM 410

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +G+   L     ++++  +   +     +   +P K + + W+T+++  A  G      
Sbjct: 411 KNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQNGSHSRAL 469

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
              R + +LE I+    +M+S++  AC   + ++S++
Sbjct: 470 ELFREV-QLEGIDL-DVMMISSILLACSGLKLISSVK 504


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 365/643 (56%), Gaps = 37/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++  N LL A+ + G +   R +F +MP RDSV+YN  + G + +G   EAL +F+ M+
Sbjct: 174 NVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMR 233

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +     T +T  + L     + DL  G+Q+HG +V      NVFV N+L D Y+K   +D
Sbjct: 234 RKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNNSLLDFYSKCDCLD 292

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ------------------- 249
           + + LF  M  R+ VS+N+MI+GY  N      + LF+EMQ                   
Sbjct: 293 EMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAG 352

Query: 250 ----------------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
                           LLGL+ +++  + ++    + G +D A   F    +K  V WT 
Sbjct: 353 SVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTA 412

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI G  QNG++E+AL LF  M    + PD+ + SS + + + LA +  G+ +H   +  G
Sbjct: 413 MITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSG 472

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
               +   SAL+DMY KCG  D+A   F+ MP RN +SWN++I+ YA  GQ   A+ +++
Sbjct: 473 HMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFE 532

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L    KPDS TF+SVLSAC H  L E    +F+ +   +GI+P  +HY+C+I+ LGR 
Sbjct: 533 GMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRV 592

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              DK  +++  +P + + +IWS++L  C   G+     +AA  LF +   +A PY++LS
Sbjct: 593 GRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILS 652

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N++A  G+WED A ++  M+ + ++K   YSW+E+ +KV+ F S D+T+P    I +EL 
Sbjct: 653 NIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELE 712

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L K++ + G+ P+T   L    ++ K++S+ YHSE+LA+A+ LI  P G TPIR+MKN+
Sbjct: 713 RLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPG-TPIRVMKNL 771

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             C DCH  +K  S I+ R II+RDS+RFHHF  G CSC D W
Sbjct: 772 SACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 155/515 (30%), Positives = 235/515 (45%), Gaps = 56/515 (10%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD-IISWNALLSAHARS 103
           L + M    ++P T  L N LLH    SG+L  AR LFD+MP R+   S N +LS ++RS
Sbjct: 21  LDARMVKTGFDPATYRL-NLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRS 79

Query: 104 GSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSR--EALQVFSRMQKDRFEPTDYTH 159
           G +     LF   P  +RD+V++   I  FA+   +R  +A+ +F  M ++   P   T 
Sbjct: 80  GQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTV 139

Query: 160 VSALNACAQLLDLRRGKQIHGKIV---------VGNLGGNVFVRNALTDMYAKGGEIDKA 210
            + LN     L    G      I+         +G L  NV V N L D Y K G +  A
Sbjct: 140 ATVLN-----LPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAA 194

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
           R +F  M +R+ V++N M+ G  K G   + +DLF  M+  GL     T S +L      
Sbjct: 195 RRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGV 254

Query: 271 GR----------------------------------IDDAGRLFHVIKEKDNVCWTTMIV 296
           G                                   +D+  +LFH + E+DNV +  MI 
Sbjct: 255 GDLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIA 314

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  N      L LF EM S          +S++S    +  +  G+ +H + V+LG+  
Sbjct: 315 GYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSS 374

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           + LV +ALIDMY KCG+ D A T F     +  VSW +MI G  QNGQ  EAL L+  + 
Sbjct: 375 EDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMR 434

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +  L PD  TF S + A  +  +   G+    S     G   S+   + ++++  +   +
Sbjct: 435 RAGLSPDRATFSSTIKASSNLAMIGLGR-QLHSYLIRSGHMSSVFSGSALLDMYTKCGCL 493

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           D+A+     +P + NS+ W+ ++S  A  G  K+ 
Sbjct: 494 DEALQTFDEMPER-NSISWNAVISAYAHYGQAKNA 527



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 168/373 (45%), Gaps = 26/373 (6%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A+ +   +   D++  NAL+  +++ G +   +  F     +  VS+   I G  
Sbjct: 360 GKQIHAQLVLLGLSSEDLVG-NALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCV 418

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             G   EALQ+F  M++    P   T  S + A + L  +  G+Q+H  ++      +VF
Sbjct: 419 QNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVF 478

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
             +AL DMY K G +D+A   FD M  RN +SWN +IS Y   GQ K  I +F+ M   G
Sbjct: 479 SGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYG 538

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDA 307
             PD VT  ++L AC   G  ++  + F +++ +  +      ++ +I    + G+ +  
Sbjct: 539 FKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKV 598

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
             +  EM  ED   D    SS++ SC    +    +V   K   +G   D      L ++
Sbjct: 599 QEMLGEMPFED---DPIIWSSILHSCRTHGNQDLARVAAEKLFSMG-STDATPYVILSNI 654

Query: 368 YCKCGVTDDAWTVFNMMPTRNV-----VSWNSM---INGYAQNGQDLEALA--------L 411
           + K G  +DA  V  +M  R +      SW  +   +  ++ N Q    +         L
Sbjct: 655 FAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERL 714

Query: 412 YDKLLQENLKPDS 424
           Y ++ ++  KPD+
Sbjct: 715 YKEMDKQGYKPDT 727



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G +     ++  +   + +  + L ++L S++ +     ++ F  + LL  Y K G L  
Sbjct: 437 GLSPDRATFSSTIKASSNLAMIGLGRQLHSYL-IRSGHMSSVFSGSALLDMYTKCGCLDE 495

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAIAGFAN 133
           A   FD+MP R+ ISWNA++SA+A  G  ++   +F+ M       DSV++ + ++  ++
Sbjct: 496 ALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSH 555

Query: 134 KGFSREALQVFSRMQ 148
            G + E ++ F  M+
Sbjct: 556 NGLAEECMKYFELME 570


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/699 (33%), Positives = 391/699 (55%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  + + G +  A  LF ++    +   N++L+ + ++  V     LFD MP RD VS+
Sbjct: 199 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSW 258

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++  +  G  REAL +   MQ         T+ S+L ACA+L  LR GKQ+H +++ 
Sbjct: 259 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 318

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +AL ++YAK G   +A+ +F+ +++RN V+W ++ISG+L+ G   + ++L
Sbjct: 319 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 378

Query: 245 FQEMQLLGLNPDEVTVSNILGA----------------CFQTGRI--------------- 273
           F +M+   +  D+  ++ ++                  C ++G+I               
Sbjct: 379 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 438

Query: 274 ----DDAGRLFHVIKEKDNVCWTTMIVGYT------------------------------ 299
                 A  +F  + EKD V WT+MI  Y+                              
Sbjct: 439 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAY 498

Query: 300 -QNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L ++  MLSE+ VRPD  +  ++   CA L +   G  + G+ V +G+  D
Sbjct: 499 IQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIID 558

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V++A+I MY KCG   +A  VF+ +  +++VSWN+MI GY+Q+G   +A+ ++D +L+
Sbjct: 559 TSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILK 618

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              KPD  ++V+VLS C H+ L + G+ +FD +   H I+P L+H++CM++LLGR+  + 
Sbjct: 619 RGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLT 678

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A DLI  +P KP + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++++ +YA
Sbjct: 679 EAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYA 738

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+ +D A IR  M+ K +KK   YSW+E+DNKVH F ++D +HP+   I ++L +L++
Sbjct: 739 DAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELME 798

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+   G+              +  +S  +HSEKLA+A+ L+  P  + PI IMKN+R+CG
Sbjct: 799 KIARLGYV-----------RTDSTRSEIHHSEKLAVAFGLMTLPTWM-PIHIMKNLRICG 846

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S + GR  ++RD+ RFHHF GG+CSC D W
Sbjct: 847 DCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 219/435 (50%), Gaps = 61/435 (14%)

Query: 31  LDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI 90
           L C  ++D   A+RL   + ++   PN    HN +L+ YAK G+L  A +LF +MP RD+
Sbjct: 70  LSCGALSD---ARRL---LLMDIAHPNV-ITHNVMLNGYAKLGRLSDAVELFGRMPARDV 122

Query: 91  ISWNALLSAHARSG----SVQDLRALF---DKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            SWN L+S + +S     S++   ++    D  P  ++ +   A+      G+   ALQ+
Sbjct: 123 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP--NAFTLACAMKSCGALGWHSLALQL 180

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDL--RRGK-QIHGKIVVGNLGGNVFVRNALTDM 200
            + +QK  F+  D + V+     A L+D+  R G   +  ++ V      +F RN++   
Sbjct: 181 LAMVQK--FDSQDDSEVA-----AALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 233

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K   +D A  LFD M  R++VSWN+M+S   ++G+ ++ +D+  +MQ  G+  D  T 
Sbjct: 234 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 293

Query: 261 SNILGAC-----------------------------------FQTGRIDDAGRLFHVIKE 285
           ++ L AC                                    ++G   +A  +F+ + +
Sbjct: 294 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 353

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           ++NV WT +I G+ Q G   +++ LFN+M +E +  D+F++++++S C     L  G+ +
Sbjct: 354 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 413

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   +  G    ++VS++LI MY KC     A  +F  M  +++VSW SMI  Y+Q G  
Sbjct: 414 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 473

Query: 406 LEALALYDKLLQENL 420
            +A   +D + ++N+
Sbjct: 474 AKAREFFDGMSEKNV 488



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 191/431 (44%), Gaps = 81/431 (18%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T + A  +C  L D RR       +++     NV   N + + YAK G +  A  LF RM
Sbjct: 64  TLLHAYLSCGALSDARR------LLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 117

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-PDEVTVSNILGAC--------- 267
             R++ SWN ++SGY ++ Q    ++ F  M   G + P+  T++  + +C         
Sbjct: 118 PARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLA 177

Query: 268 --------------------------FQTGRIDDAGRLFHVIK----------------- 284
                                      + G +D A RLF  IK                 
Sbjct: 178 LQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKT 237

Query: 285 --------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                         E+D V W  M+   +Q+G+  +AL +  +M S+ VR D  + +S +
Sbjct: 238 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 297

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA+L+SL  G+ +H + +      D  V+SAL+++Y K G   +A  VFN +  RN V
Sbjct: 298 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV 357

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQNHFDS 449
           +W  +I+G+ Q G   E++ L++++  E +  D F   +++S C    DL    Q H  S
Sbjct: 358 AWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH--S 415

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +    G   ++     +I++  +  ++  A  + + +  K + + W+++++  +  G++ 
Sbjct: 416 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK-DIVSWTSMITAYSQVGNVA 474

Query: 510 HGEMAARHLFE 520
                AR  F+
Sbjct: 475 K----AREFFD 481


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/651 (34%), Positives = 363/651 (55%), Gaps = 39/651 (5%)

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD  P   +   N LL ++     +     LF+++P +DSV++NT I G+   G   E++
Sbjct: 178 FDTNPFLTVS--NVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESI 235

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F +M++   +P+D+T    L A   L D   G+Q+H   V      +  V N + D Y
Sbjct: 236 HLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFY 295

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           +K   + + R LFD M   + VS+N++IS Y +  Q +  +  F+EMQ +G +      +
Sbjct: 296 SKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFA 355

Query: 262 NILG-----ACFQTGR------------------------------IDDAGRLFHVIKEK 286
            +L      +  Q GR                               ++A  +F  + ++
Sbjct: 356 TMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR 415

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
             V WT +I GY Q G     L LF +M   ++R D+ + ++V+ + A  ASL  G+ +H
Sbjct: 416 TTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLH 475

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              +  G  +++   S L+DMY KCG   DA  VF  MP RN VSWN++I+ +A NG   
Sbjct: 476 AFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGE 535

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
            A+  + K+++  L+PDS + + VL+AC H    E+G  +F ++S ++GITP   HYACM
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACM 595

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-N 525
           ++LLGR+    +A  L+  +P +P+ ++WS++L+ C +  +    E AA  LF +E + +
Sbjct: 596 LDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRD 655

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           A  Y+ +SN+YAA G WE V  ++ +M+ + +KK  AYSW+E+++K+H F S D+THP  
Sbjct: 656 AAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNG 715

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           + I  ++++L  +++  G+ P+T  V+ D  E+ K++S+ YHSE+LA+A+ LI  P G  
Sbjct: 716 DEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGC- 774

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           PI +MKN+R C DCH  +K  S I+ R I +RD++RFHHF  G CSC D W
Sbjct: 775 PIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 135/484 (27%), Positives = 226/484 (46%), Gaps = 46/484 (9%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G++  AR ++D+MP ++ +S N ++S H ++G V   R LFD MP R  V++   +  
Sbjct: 60  RRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGW 119

Query: 131 FANKGFSREALQVFSRMQKDR--FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +A      EA ++F +M +      P   T  + L  C   +      Q+H   V     
Sbjct: 120 YARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFD 179

Query: 189 GNVF--VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
            N F  V N L   Y +   +D A  LF+ +  ++ V++N +I+GY K+G   + I LF 
Sbjct: 180 TNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFL 239

Query: 247 EMQLLGLNPDEVTVSNILGAC-----FQTG------------------------------ 271
           +M+  G  P + T S +L A      F  G                              
Sbjct: 240 KMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHD 299

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           R+ +   LF  + E D V +  +I  Y+Q  + E +L  F EM         F  ++++S
Sbjct: 300 RVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLS 359

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
             A L+SL  G+ +H +A++   D  L V ++L+DMY KC + ++A  +F  +P R  VS
Sbjct: 360 IAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS 419

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSI 450
           W ++I+GY Q G     L L+ K+   NL+ D  TF +VL A    A L    Q H   I
Sbjct: 420 WTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFII 479

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
            +  G   ++   + ++++  +   +  AV + + +P + N++ W+ L+S  A  GD   
Sbjct: 480 RS--GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAHADNGD--- 533

Query: 511 GEMA 514
           GE A
Sbjct: 534 GEAA 537



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 170/412 (41%), Gaps = 79/412 (19%)

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           A  LD RR   +  +I+      +    N + +   + G++  AR ++D M ++N VS N
Sbjct: 27  ATFLDTRR---VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTN 83

Query: 227 LMISGYLKNGQPKKCIDLFQEMQ---------LLGLN----------------------- 254
            MISG++K G      DLF  M          L+G                         
Sbjct: 84  TMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCT 143

Query: 255 -PDEVTVSNILGAC--------------------FQTG-----------------RIDDA 276
            PD VT + +L  C                    F T                  R+D A
Sbjct: 144 LPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLA 203

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             LF  I EKD+V + T+I GY ++G   +++ LF +M     +P  F+ S V+ +   L
Sbjct: 204 CVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGL 263

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
                GQ +H  +V  G   D  V + ++D Y K     +   +F+ MP  + VS+N +I
Sbjct: 264 HDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVI 323

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHG 455
           + Y+Q  Q   +L  + ++        +F F ++LS   +    + G Q H  ++ A   
Sbjct: 324 SSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLAT-- 381

Query: 456 ITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              S+ H    ++++  +    ++A  + KSLP +  ++ W+ L+S    KG
Sbjct: 382 -ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQR-TTVSWTALISGYVQKG 431



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 103/260 (39%), Gaps = 65/260 (25%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM--- 116
           F  + L+  YAK G +  A  +F++MP R+ +SWNAL+SAHA +G  +     F KM   
Sbjct: 488 FSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIES 547

Query: 117 ---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQ------------------------- 148
              P  DSVS    +   ++ GF  +  + F  M                          
Sbjct: 548 GLQP--DSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRF 605

Query: 149 --------KDRFEPTDYTHVSALNACA----QLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
                   +  FEP +    S LNAC     Q L  R  +++     + +    V    +
Sbjct: 606 AEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV----S 661

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNL-----VSW---NLMISGYLKNGQP--------KK 240
           ++++YA  GE +K R +   M  R +      SW   N  I  +  N Q         +K
Sbjct: 662 MSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVRK 721

Query: 241 CIDLFQEMQLLGLNPDEVTV 260
             +L  E++  G  PD  +V
Sbjct: 722 INELTAEIEREGYKPDTSSV 741


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/699 (33%), Positives = 391/699 (55%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  + + G +  A  LF ++    +   N++L+ + ++  V     LFD MP RD VS+
Sbjct: 179 LVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSW 238

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++  +  G  REAL +   MQ         T+ S+L ACA+L  LR GKQ+H +++ 
Sbjct: 239 NMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIR 298

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +AL ++YAK G   +A+ +F+ +++RN V+W ++ISG+L+ G   + ++L
Sbjct: 299 NLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVEL 358

Query: 245 FQEMQLLGLNPDEVTVSNILGA----------------CFQTGRI--------------- 273
           F +M+   +  D+  ++ ++                  C ++G+I               
Sbjct: 359 FNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAK 418

Query: 274 ----DDAGRLFHVIKEKDNVCWTTMIVGYT------------------------------ 299
                 A  +F  + EKD V WT+MI  Y+                              
Sbjct: 419 CDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAY 478

Query: 300 -QNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L ++  MLSE+ VRPD  +  ++   CA L +   G  + G+ V +G+  D
Sbjct: 479 IQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIID 538

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V++A+I MY KCG   +A  VF+ +  +++VSWN+MI GY+Q+G   +A+ ++D +L+
Sbjct: 539 TSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILK 598

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              KPD  ++V+VLS C H+ L + G+ +FD +   H I+P L+H++CM++LLGR+  + 
Sbjct: 599 RGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLT 658

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A DLI  +P KP + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++++ +YA
Sbjct: 659 EAKDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYA 718

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+ +D A IR  M+ K +KK   YSW+E+DNKVH F ++D +HP+   I ++L +L++
Sbjct: 719 DAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELME 778

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+   G+              +  +S  +HSEKLA+A+ L+  P  + PI IMKN+R+CG
Sbjct: 779 KIARLGYV-----------RTDSTRSEIHHSEKLAVAFGLMTLPTWM-PIHIMKNLRICG 826

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S + GR  ++RD+ RFHHF GG+CSC D W
Sbjct: 827 DCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/435 (28%), Positives = 219/435 (50%), Gaps = 61/435 (14%)

Query: 31  LDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI 90
           L C  ++D   A+RL   + ++   PN    HN +L+ YAK G+L  A +LF +MP RD+
Sbjct: 50  LSCGALSD---ARRL---LLMDIAHPNV-ITHNVMLNGYAKLGRLSDAVELFGRMPARDV 102

Query: 91  ISWNALLSAHARSG----SVQDLRALF---DKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            SWN L+S + +S     S++   ++    D  P  ++ +   A+      G+   ALQ+
Sbjct: 103 ASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWP--NAFTLACAMKSCGALGWHSLALQL 160

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDL--RRGK-QIHGKIVVGNLGGNVFVRNALTDM 200
            + +QK  F+  D + V+     A L+D+  R G   +  ++ V      +F RN++   
Sbjct: 161 LAMVQK--FDSQDDSEVA-----AALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAG 213

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K   +D A  LFD M  R++VSWN+M+S   ++G+ ++ +D+  +MQ  G+  D  T 
Sbjct: 214 YVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTY 273

Query: 261 SNILGAC-----------------------------------FQTGRIDDAGRLFHVIKE 285
           ++ L AC                                    ++G   +A  +F+ + +
Sbjct: 274 TSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHD 333

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           ++NV WT +I G+ Q G   +++ LFN+M +E +  D+F++++++S C     L  G+ +
Sbjct: 334 RNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQL 393

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   +  G    ++VS++LI MY KC     A  +F  M  +++VSW SMI  Y+Q G  
Sbjct: 394 HSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNV 453

Query: 406 LEALALYDKLLQENL 420
            +A   +D + ++N+
Sbjct: 454 AKAREFFDGMSEKNV 468



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/431 (24%), Positives = 191/431 (44%), Gaps = 81/431 (18%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T + A  +C  L D RR       +++     NV   N + + YAK G +  A  LF RM
Sbjct: 44  TLLHAYLSCGALSDARR------LLLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRM 97

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-PDEVTVSNILGAC--------- 267
             R++ SWN ++SGY ++ Q    ++ F  M   G + P+  T++  + +C         
Sbjct: 98  PARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLA 157

Query: 268 --------------------------FQTGRIDDAGRLFHVIK----------------- 284
                                      + G +D A RLF  IK                 
Sbjct: 158 LQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKT 217

Query: 285 --------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                         E+D V W  M+   +Q+G+  +AL +  +M S+ VR D  + +S +
Sbjct: 218 YGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSL 277

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA+L+SL  G+ +H + +      D  V+SAL+++Y K G   +A  VFN +  RN V
Sbjct: 278 TACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNV 337

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQNHFDS 449
           +W  +I+G+ Q G   E++ L++++  E +  D F   +++S C    DL    Q H  S
Sbjct: 338 AWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLH--S 395

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +    G   ++     +I++  +  ++  A  + + +  K + + W+++++  +  G++ 
Sbjct: 396 LCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEK-DIVSWTSMITAYSQVGNVA 454

Query: 510 HGEMAARHLFE 520
                AR  F+
Sbjct: 455 K----AREFFD 461


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/693 (35%), Positives = 385/693 (55%), Gaps = 70/693 (10%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           ++L +R+ +   + F   ++ F+ N L++ YAK G +  A+ +F+ M  RD++SWN L+ 
Sbjct: 217 LDLGQRVHAQ-SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM- 274

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                         AG        EALQ+F   +    + T  T
Sbjct: 275 ------------------------------AGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVG--NLGGNVFVRNALTDMYAKGGEIDKARWLFD- 215
           + + +  CA L  L   +Q+H  ++    +L GNV    AL D Y+K GE+  A  +F  
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADAYSKCGELADALNIFSM 362

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----- 270
              +RN+VSW  +ISG ++NG     + LF  M+   + P+E T S +L A         
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQI 422

Query: 271 --------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                     G  +DA  +F +I++KD V W+ M+  + Q G  
Sbjct: 423 HAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCA-KLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           E A  LFN+M  + ++P++F+ISSV+ +CA   A +  G+  H  ++     D + VSSA
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSA 542

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MY + G  D A  VF     R++VSWNSMI+GYAQ+G  ++A+  + ++    ++ D
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF++V+  C H  L   GQ +FDS+   H I P+++HYACM++L  R+  +D+ + LI
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P    +++W TLL  C +  +++ G+ +A  L  LEP ++  Y++LSN+YAA G+W+
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           +   +R  M  + VKK A  SWI+I NKVH F++ D++HP ++ IY++L  +I +L++ G
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           +SPNT  VLHD  E++K   +  HSE+LALA+ LI  P G TP++I+KN+RVCGDCH+ M
Sbjct: 783 YSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPG-TPLQIVKNLRVCGDCHMVM 841

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K  S I  R II+RD +RFHHF GG CSC D W
Sbjct: 842 KMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 223/455 (49%), Gaps = 43/455 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +  +L+  + + GSV +   +F+ MP ++ V++ + + G A+     E + +F RM+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P  +T  S L+A A    L  G+++H + V      +VFV N+L +MYAK G ++
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL---------------LGL 253
            A+ +F+ M  R++VSWN +++G   N    + + LF E +                L  
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 254 NPDEVTVSNILGACF--------------------QTGRIDDAGRLFHVIKEKDNVC-WT 292
           N  ++ ++  L +C                     + G + DA  +F +     NV  WT
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV-SSCAKLASLYHGQVVHGKAVV 351
            +I G  QNG    A++LF+ M  + V P++F+ S+++ +S + L    H QV+      
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIK----- 428

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                   V +AL+  Y K G T+DA ++F M+  ++VV+W++M++ +AQ G    A  L
Sbjct: 429 TNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++K+  + +KP+ FT  SV+ AC            F +IS  +    ++   + ++++  
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYS 548

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           R  ++D A  + +    + + + W++++S  A  G
Sbjct: 549 RKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHG 582



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 209/478 (43%), Gaps = 71/478 (14%)

Query: 96  LLSAHARSGSVQD---------LRALFDKMPIRDS-VSYNTAIAGFANKGFSREALQVFS 145
           LL+  A    V+D          R   D++P RD+ V  N  +  +A +G   E L  FS
Sbjct: 29  LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFS 88

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKG 204
             ++        T    L AC  + D   G+Q+H   V  G+  G V    +L DMY K 
Sbjct: 89  VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKC 148

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G + +   +F+ M  +N+V+W  +++G        + + LF  M+  G+ P+  T +++L
Sbjct: 149 GSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVL 208

Query: 265 GACFQTGRID-----------------------------------DAGRLFHVIKEKDNV 289
            A    G +D                                   DA  +F+ ++ +D V
Sbjct: 209 SAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV 268

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W T++ G   N  E +AL LF+E  +   +  + + ++V+  CA L  L   + +H   
Sbjct: 269 SWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCV 328

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEA 408
           +  G      V +AL D Y KCG   DA  +F+M   +RNVVSW ++I+G  QNG    A
Sbjct: 329 LKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACL-------HADLFERGQNHFDSISAVHGITPSLD 461
           + L+ ++ ++ + P+ FT+ ++L A L       HA + +    H   +      T  L 
Sbjct: 389 VVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVG-----TALLA 443

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
            Y+       +    + A+ + K +  K + + WS +LS  A  GD +     A +LF
Sbjct: 444 SYS-------KFGSTEDALSIFKMIEQK-DVVAWSAMLSCHAQAGDCE----GATYLF 489


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 378/643 (58%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++   NAL++ +AR G + +   +F  M   D++S+N+ ++GF   G   EALQ +  M+
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P     +S + A A+  +   G QIH   +   L  ++ V N+L DMYAK   + 
Sbjct: 412 DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMK 471

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
               +FD+M ++++VSW  +I+G+ +NG   + ++LF+E+QL G++ D + +S+IL AC 
Sbjct: 472 YMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS 531

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G +D A R+F +I+ KD V WT+M
Sbjct: 532 GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSM 591

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I  Y  NG   +AL LF+ M    V PD  S+ S++S+ A L++L  G+ +HG  +  G 
Sbjct: 592 ISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGF 651

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +  ++S L+DMY +CG  + +  VFN +  +++V W SMIN Y  +G    A+ L+ +
Sbjct: 652 VLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRR 711

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  E++ PD   FV+VL AC H+ L   G+   +S+   + + P  +HY C+++LLGR++
Sbjct: 712 MEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRAN 771

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   +K +  +P + +W  LL  C +  + + GE+AA+ L E++P N G Y+++SN
Sbjct: 772 HLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSN 831

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YAA  RW+DV  +R  MK+  +KK    SWIE+ NKVH F++ D++HP++  IY +LS+
Sbjct: 832 VYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQ 891

Query: 595 LIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           + +KL +E G+   TK VLH+ +EEEKV+ +  HSE+LA+AY ++  P G + +RI KN+
Sbjct: 892 ITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGAS-LRITKNL 950

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH F K  S    R +++RD+NRFHHF GG CSC D W
Sbjct: 951 RVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 160/618 (25%), Positives = 272/618 (44%), Gaps = 114/618 (18%)

Query: 16  SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           S  Q + +EAY+ ++  C     +   +++ +HM  +    N+ FL  RL+  Y K G L
Sbjct: 107 SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCL 166

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
                                           D   LFD MP +   ++N  I  +   G
Sbjct: 167 V-------------------------------DAEKLFDGMPHKTIFTWNAMIGAYVTNG 195

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
               +L+++  M+         T    L AC  L D R G ++HG  +       VFV N
Sbjct: 196 EPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVAN 255

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           ++  MY K  +++ AR LFDRM  + ++VSWN MIS Y  NGQ  + + LF EMQ   L 
Sbjct: 256 SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLA 315

Query: 255 PDEVTVSNILGACFQT-----------------------------------GRIDDAGRL 279
           P+  T    L AC  +                                   G++ +A  +
Sbjct: 316 PNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANI 375

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F+ + + D + W +M+ G+ QNG   +AL  ++EM     +PD  ++ S++++ A+  + 
Sbjct: 376 FYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNT 435

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            +G  +H  A+  G+D DL V ++L+DMY K         +F+ MP ++VVSW ++I G+
Sbjct: 436 LNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGH 495

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHF- 447
           AQNG    AL L+ ++  E +  D     S+L AC           +H+ +  +G +   
Sbjct: 496 AQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLV 555

Query: 448 --DSISAVHGITPSLDHYACMINLL------------------GRSSDVDKAVDLIKSLP 487
             + I  V+G   ++D+ A M  L+                  G +++  +   L+K   
Sbjct: 556 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 615

Query: 488 HKPNSLIWSTLLSVCAM--------KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            +P+S+   +L+S+ +         KG   HG +  R  F LE   A     L +MYA C
Sbjct: 616 VEPDSI---SLVSILSAAASLSALKKGKEIHGFL-IRKGFVLEGSLAST---LVDMYARC 668

Query: 540 GRWEDVASIRSSMKSKNV 557
           G  E   ++ + +++K++
Sbjct: 669 GTLEKSRNVFNFIRNKDL 686



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 210/457 (45%), Gaps = 46/457 (10%)

Query: 134 KGFSREALQ----VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LG 188
           +G   EA Q    +F+     +F   D  + S L  C     L  G+Q+H  ++  N L 
Sbjct: 89  RGSVNEAFQSLTDLFANQSPSQFS-LDEAYSSVLELCGSKKALSEGQQVHAHMITSNALF 147

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VF+   L  MY K G +  A  LFD M ++ + +WN MI  Y+ NG+P   ++L++EM
Sbjct: 148 NSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREM 207

Query: 249 QLLGLNPDEVTVSNILGAC-----------------------------------FQTGRI 273
           ++ G+  D  T   IL AC                                    +   +
Sbjct: 208 RVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDL 267

Query: 274 DDAGRLFHVIKEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + A +LF  + EK++V  W +MI  Y+ NG+  +AL LF EM    + P+ ++  + + +
Sbjct: 268 NGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQA 327

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C   + +  G  +H   +      ++ V++ALI MY + G   +A  +F  M   + +SW
Sbjct: 328 CEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISW 387

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NSM++G+ QNG   EAL  Y ++     KPD    +S+++A   +     G     + + 
Sbjct: 388 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGM-QIHAYAM 446

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +G+   L     ++++  +   +     +   +P K + + W+T+++  A  G      
Sbjct: 447 KNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVSWTTIIAGHAQNGSHSRAL 505

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
              R + +LE I+    +M+S++  AC   + ++S++
Sbjct: 506 ELFREV-QLEGIDL-DVMMISSILLACSGLKLISSVK 540


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/687 (35%), Positives = 382/687 (55%), Gaps = 72/687 (10%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           + L    PN  F    L+H Y + G++  A  +FD+MP RD+ +WNA+LS   R+    D
Sbjct: 93  LRLGLLHPNV-FASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRAAD 151

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
              L  +M                 +G + +A+                T  S L  C  
Sbjct: 152 AVTLLGRM---------------VGEGVAGDAV----------------TLSSVLPMCVV 180

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L D      +H   V   L G +FV NAL D+Y K G + +A W+F  M  R+LV+WN +
Sbjct: 181 LGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSI 240

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG----------------- 271
           IS   + G+    ++LF  M   G+ PD +T+ ++  A  Q G                 
Sbjct: 241 ISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGW 300

Query: 272 -------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                              +ID A ++F  + ++D V W T+I GY QNG   +A+ ++N
Sbjct: 301 DVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYN 360

Query: 313 EMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           +M + E ++P + +  SV+ + + L  L  G  +H  ++  G++ D+ V++ LID+Y KC
Sbjct: 361 DMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKC 420

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   +A  +F  MP R+   WN++I G   +G   +AL+L+ ++ QE +KPD  TFVS+L
Sbjct: 421 GKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLL 480

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           +AC HA L ++G++ FD +  V+GI P   HY CM+++LGR+  +D+A + I+S+P KP+
Sbjct: 481 AACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPD 540

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
           S +W  LL  C + G+++ G++A+++LFEL+P N G Y+++SNMYA  G+W+ V ++RS 
Sbjct: 541 SAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSL 600

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRT--HPETEIIYEELSKLIKKLQEAGFSPNTK 609
           ++ +N++K   +S +E+   V  F S  +T  HP+ E I   L  L+ K++ AG+ P+  
Sbjct: 601 VRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYS 660

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VL D +E+EK + +  HSE+LA+A+ +I  P G TP+ I KN+RVCGDCH   K+ S I
Sbjct: 661 FVLQDVEEDEKEQILNNHSERLAIAFGIINTPPG-TPLHIYKNLRVCGDCHSATKYISKI 719

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R II+RD+NRFHHF  G+CSC D W
Sbjct: 720 TEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 189/402 (47%), Gaps = 44/402 (10%)

Query: 177 QIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           Q+H   + +G L  NVF   +L   Y + G + +A  +FD M  R++ +WN M+SG  +N
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR----------------------- 272
            +    + L   M   G+  D VT+S++L  C   G                        
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC 206

Query: 273 ---IDDAGRL---------FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
              ID  G+L         F  +  +D V W ++I    Q GK   A+ LF+ M+   V 
Sbjct: 207 NALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVC 266

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWT 379
           PD  ++ S+ S+ A+       + VH      G D  D++  +A++DMY K    D A  
Sbjct: 267 PDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQK 326

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSACLHAD 438
           VF+ +P R+VVSWN++I GY QNG   EA+ +Y+ +   E LKP   TFVSVL A  +  
Sbjct: 327 VFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLG 386

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
             ++G     ++S   G+   +    C+I+L  +   + +A+ L + +P + ++  W+ +
Sbjct: 387 GLQQGMR-MHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRR-STGPWNAI 444

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
           ++   + G   HG  A     +++     P ++   ++ AAC
Sbjct: 445 IAGLGVHG---HGAKALSLFSQMQQEEIKPDHVTFVSLLAAC 483


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 255/716 (35%), Positives = 407/716 (56%), Gaps = 49/716 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++ Q +  C    D+   K L + + +  + P +T+L N  L  Y+K  +L  AR +FD 
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHA-LYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
               ++ S+N L+SA+A+   V+    LFD+MP  DSVSYNT IA +A +G ++ A Q+F
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M++   +   +T    + AC   + L R  Q+H   VV  L   V V NAL   Y+K 
Sbjct: 129 LEMREAFLDMDGFTLSGIITACGINVGLIR--QLHALSVVTGLDSYVSVGNALITSYSKN 186

Query: 205 GEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G + +AR +F  ++ +R+ VSWN M+  Y+++ +  K ++L+ EM + GL  D  T++++
Sbjct: 187 GFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASV 246

Query: 264 LGAC--------------------------FQTGRID----------DAGRLFHVIKEKD 287
           L A                             +G ID          D  ++F  I   D
Sbjct: 247 LTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 288 NVCWTTMIVGYT-QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
            V W TMI GY+      ++AL  F ++     RPD  S+  V+S+C+ ++S   G+ VH
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 347 GKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           G A+ L +  + + V++ALI MY KCG   DA T+F+ MP  N VS+NSMI GYAQ+G  
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            ++L L+ ++L+ +  P + TF+SVL+AC H    E G+ +F+ +    GI P   H++C
Sbjct: 427 FQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEAGHFSC 486

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLGR+  + +A  LI+++P  P    WS LL  C + G+++    AA  L +L+P+N
Sbjct: 487 MIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQLDPLN 546

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           A PY+ML+N+Y+  GR +D AS+R  M+ + VKK    SWIE++ ++H FV+ED  HP  
Sbjct: 547 AAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFVAEDTFHPMI 606

Query: 586 EIIYEELSKLIKKLQEAGFSPNTK--LVLHDT---QEEEKVKSICYHSEKLALAYCLIKK 640
           + I E L ++++K+++ G++P  +   V  D    Q EE+++ + +HSEKLA+++ L+  
Sbjct: 607 KKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELR-LGHHSEKLAVSFGLMST 665

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             G  PI + KN+R+C DCH  +K+ S+++ R I +RDS+RFH F  G CSC   W
Sbjct: 666 REG-EPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCGGYW 720


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/693 (35%), Positives = 385/693 (55%), Gaps = 70/693 (10%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           ++L +R+ +   + F   ++ F+ N L++ YAK G +  A+ +F+ M  RD++SWN L+ 
Sbjct: 217 LDLGQRVHAQ-SVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLM- 274

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                         AG        EALQ+F   +    + T  T
Sbjct: 275 ------------------------------AGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVG--NLGGNVFVRNALTDMYAKGGEIDKARWLFD- 215
           + + +  CA L  L   +Q+H  ++    +L GNV    AL D Y+K GE+  A  +F  
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVM--TALADAYSKCGELADALNIFSM 362

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----- 270
              +RN+VSW  +ISG ++NG     + LF  M+   + P+E T S +L A         
Sbjct: 363 TTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQI 422

Query: 271 --------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                     G  +DA  +F +I++KD V W+ M+  + Q G  
Sbjct: 423 HAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDC 482

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCA-KLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           E A  LFN+M  + ++P++F+ISSV+ +CA   A +  G+  H  ++     D + VSSA
Sbjct: 483 EGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSA 542

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MY + G  D A  VF     R++VSWNSMI+GYAQ+G  ++A+  + ++    ++ D
Sbjct: 543 LVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMD 602

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF++V+  C H  L   GQ +FDS+   H I P+++HYACM++L  R+  +D+ + LI
Sbjct: 603 GVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLI 662

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P    +++W TLL  C +  +++ G+ +A  L  LEP ++  Y++LSN+YAA G+W+
Sbjct: 663 RDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWK 722

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           +   +R  M  + VKK A  SWI+I NKVH F++ D++HP ++ IY++L  +I +L++ G
Sbjct: 723 ERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDG 782

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           +SPNT  VLHD  E++K   +  HSE+LALA+ LI  P G TP++I+KN+RVCGDCH+ M
Sbjct: 783 YSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPG-TPLQIVKNLRVCGDCHMVM 841

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K  S I  R II+RD +RFHHF GG CSC D W
Sbjct: 842 KMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 224/455 (49%), Gaps = 43/455 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ +  +L+  + + GSV +   +F+ MP ++ V++ + + G A+     E + +F RM+
Sbjct: 134 EVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMR 193

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P  +T  S L+A A    L  G+++H + V      +VFV N+L +MYAK G ++
Sbjct: 194 AEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVE 253

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL---------------LGL 253
            A+ +F+ M  R++VSWN +++G   N    + + LF E +                L  
Sbjct: 254 DAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCA 313

Query: 254 NPDEVTVSNILGACF--------------------QTGRIDDAGRLFHVIKEKDNVC-WT 292
           N  ++ ++  L +C                     + G + DA  +F +     NV  WT
Sbjct: 314 NLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWT 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV-SSCAKLASLYHGQVVHGKAVV 351
            +I G  QNG    A++LF+ M  + V P++F+ S+++ +S + L    H QV+      
Sbjct: 374 AIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQH 433

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           +       V +AL+  Y K G T+DA ++F M+  ++VV+W++M++ +AQ G    A  L
Sbjct: 434 IPS-----VGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYL 488

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++K+  + +KP+ FT  SV+ AC            F +IS  +    ++   + ++++  
Sbjct: 489 FNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYS 548

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           R  ++D A  + +    + + + W++++S  A  G
Sbjct: 549 RKGNIDSAQIVFERQTDR-DLVSWNSMISGYAQHG 582



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 125/478 (26%), Positives = 210/478 (43%), Gaps = 71/478 (14%)

Query: 96  LLSAHARSGSVQD---------LRALFDKMPIRDS-VSYNTAIAGFANKGFSREALQVFS 145
           LL+  A    V+D          R   D++P RD+ V  N  +  +A +G   E L  FS
Sbjct: 29  LLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFS 88

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKG 204
             ++        T    L AC  + D   G+Q+H   V  G+  G V    +L DMY K 
Sbjct: 89  VARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKC 148

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G + +   +F+ M  +N+V+W  +++G        + + LF  M+  G+ P+  T +++L
Sbjct: 149 GSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVL 208

Query: 265 GACFQTGRID-----------------------------------DAGRLFHVIKEKDNV 289
            A    G +D                                   DA  +F+ ++ +D V
Sbjct: 209 SAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMV 268

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W T++ G   N  E +AL LF+E  +   +  + + ++V+  CA L  L   + +H   
Sbjct: 269 SWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCV 328

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEA 408
           +  G      V +AL D Y KCG   DA  +F+M   +RNVVSW ++I+G  QNG    A
Sbjct: 329 LKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACL-------HADLFERGQNHFDSISAVHGITPSLD 461
           + L+ ++ ++ + P+ FT+ ++L A L       HA + +    H  S+      T  L 
Sbjct: 389 VVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVG-----TALLA 443

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
            Y+       +    + A+ + K +  K + + WS +LS  A  GD +     A +LF
Sbjct: 444 SYS-------KFGSTEDALSIFKMIEQK-DVVAWSAMLSCHAQAGDCE----GATYLF 489


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 353/603 (58%), Gaps = 36/603 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+  +   G +   R +FD  P  D +++N  I+ +   G   E+ ++F  M+  +  
Sbjct: 157 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 216

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT  T V  L+AC++L DLR GK++H  +    +  N+ + NA+ DMYA  GE+D A  +
Sbjct: 217 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 276

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  MNNR+++SW  ++SG+                            +N+       G I
Sbjct: 277 FRSMNNRDIISWTTIVSGF----------------------------TNL-------GEI 301

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A   F  + EKD V WT MI GY ++ + ++AL LF  M + +V+PD+F++ SV+++C
Sbjct: 302 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 361

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L +L  G+ +        + +DL V +ALIDMY KCG  D A ++F  M  R+  +W 
Sbjct: 362 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 421

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G A NG   +AL ++  +L+ ++ PD  T++ VLSAC H  L ++G+ +F  +++ 
Sbjct: 422 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 481

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI P++ HY C+++LL R+  + +A ++I+++P K NS++W  LL+ C +  +    EM
Sbjct: 482 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 541

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
             + + ELEP N   Y++L N+YAAC RW D+  +R  M  K +KK    S IE++ +VH
Sbjct: 542 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVH 601

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +FV+ DR+HP+T+ I  +L K+ + L+ AG+SP+   V  D  EE+K  S+  HSEKLA+
Sbjct: 602 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 661

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI  P GVT IRI KN+R+C DCH   K  S +  R +I+RD  RFHHF  G CSCK
Sbjct: 662 AFGLINSPPGVT-IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCK 720

Query: 694 DNW 696
           D W
Sbjct: 721 DYW 723



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 210/484 (43%), Gaps = 112/484 (23%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  RG       +  L    TR   +E  ++L  H+  +  + N  F+H  L+  Y   G
Sbjct: 109 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNV-FVHTALVQMYLLCG 167

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           +L  AR +FD  P  D+I+WN ++SA+ + G  ++ R LF  M                 
Sbjct: 168 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM----------------- 210

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
                E  QV          PT  T V  L+AC++L DLR GK++H  +    +  N+ +
Sbjct: 211 -----EDKQVL---------PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 256

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNL------------------------------- 222
            NA+ DMYA  GE+D A  +F  MNNR++                               
Sbjct: 257 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 316

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  MI GY+++ + K+ ++LF+ MQ   + PDE T+ ++L AC               
Sbjct: 317 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 376

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                               F+ G +D A  +F  + ++D   WT MIVG   NG  E A
Sbjct: 377 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 436

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL------GVDDDLLVS 361
           L +F+ ML   + PD+ +   V+S+C      + G V  G+   L      G++ ++   
Sbjct: 437 LDMFSNMLKASILPDEITYIGVLSACT-----HTGLVDKGRKYFLRMTSQHGIEPNIAHY 491

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
             L+D+  + G   +A+ V   MP + N + W +++ G     +   A  +  ++L+  L
Sbjct: 492 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--L 549

Query: 421 KPDS 424
           +PD+
Sbjct: 550 EPDN 553



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 252 GLNPDEVTVSNILGAC--FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GLN + V  + ++  C   + G    A RLF  I E +   W TMI GY++    +  + 
Sbjct: 45  GLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVS 104

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           L+ EML   V+PD+++   +     +  +L +G+ +HG  +  G+  ++ V +AL+ MY 
Sbjct: 105 LYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYL 164

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            CG  D A  VF++ P  +V++WN +I+ Y + G+  E+  L+  +  + + P + T V 
Sbjct: 165 LCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVL 224

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC        G+     +     +  +L     MI++     ++D A+ + +S+ ++
Sbjct: 225 VLSACSKLKDLRTGKKVHSYVKNCK-VESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 283

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM---YAACGRWEDVA 546
            + + W+T++S     G+I      AR+ F+  P     Y+  + M   Y    R+++  
Sbjct: 284 -DIISWTTIVSGFTNLGEID----VARNYFDKMP--EKDYVSWTAMIDGYIRSNRFKEAL 336

Query: 547 SIRSSMKSKNVK 558
            +  +M++ NVK
Sbjct: 337 ELFRNMQATNVK 348


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/724 (34%), Positives = 388/724 (53%), Gaps = 41/724 (5%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           + ++S+ Q+  E ++  L+    +    + A  L + M  ++ +P+   + + LL   A 
Sbjct: 268 EKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVAS-LLSACAS 326

Query: 72  SGKLFYARDLFDKMP----LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           +G L     L   +       D+I   ALL  +     ++    +F      + V +N  
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           +  F       E+ ++F +MQ     P  +T+ S L  C  +  L  G+QIH +++    
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGF 446

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             NV+V + L DMYAK G++D A  +   +   ++VSW  +ISGY ++    + +  F+E
Sbjct: 447 QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKE 506

Query: 248 MQLLGLNPDEVTVSNILGACF-----------------------------------QTGR 272
           M   G+  D +  S+ + AC                                    + GR
Sbjct: 507 MLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGR 566

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I +A   F  I  KD++ W  +I G+ Q+G  EDAL +F +M    +    F+  S VS+
Sbjct: 567 IKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSA 626

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
            A +A++  G+ +H   +  G D D+ VS+ALI  Y KCG  +DA   F  MP +N VSW
Sbjct: 627 AANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSW 686

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N+MI GY+Q+G   EA+ L++K+ Q    P+  TFV VLSAC H  L  +G  +F+S+S 
Sbjct: 687 NAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSK 746

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            HG+ P   HYAC+++L+ R+  + +A   I+ +P +P++ IW TLLS C +  +++ GE
Sbjct: 747 EHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGE 806

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
            AA+HL ELEP ++  Y++LSNMYA  G+W+     R  M+++ VKK    SWIE+ N V
Sbjct: 807 FAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSV 866

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           H F   DR HP  + IYE L++L KK  E G+  +   +L+D ++E+K  ++  HSEKLA
Sbjct: 867 HAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLA 926

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           + + L+     V PI +MKN+RVC DCH ++KF S I  R II+RD+ RFHHF GG CSC
Sbjct: 927 ITFGLLSLSDTV-PIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSC 985

Query: 693 KDNW 696
           KD W
Sbjct: 986 KDYW 989



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/562 (23%), Positives = 263/562 (46%), Gaps = 73/562 (12%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +++ G   T   ++ ++  CT++   ++ ++L + +   +     T++ N L+  Y++  
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA-LVFKYGSSLETYVCNALVTLYSRMP 262

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
               A  +F KM  +D +S+N+L+S                               G A 
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLIS-------------------------------GLAQ 291

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           +GFS  AL++F++M++D  +P   T  S L+ACA    L +G+Q+H  ++   +  ++ V
Sbjct: 292 QGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIV 351

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             AL D+Y    +I  A  +F      N+V WN+M+  + K     +   +F++MQ+ GL
Sbjct: 352 EGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGL 411

Query: 254 NPDEVTVSNILGAC--------------------FQT---------------GRIDDAGR 278
            P++ T  +IL  C                    FQ                G++D A  
Sbjct: 412 IPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHV 471

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +   + E D V WT +I GY Q+    +AL  F EML+  ++ D    SS +S+CA + +
Sbjct: 472 ILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA 531

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H ++ V G  +DL + +AL+ +Y +CG   +A+  F  +  ++ +SWN +I+G
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           +AQ+G   +AL ++ ++ +  L+   FTF S +SA  +    ++G+    ++    G   
Sbjct: 592 FAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGK-QIHAMIIKRGFDS 650

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            ++    +I    +   ++ A      +P K N + W+ +++  +  G   +G  A    
Sbjct: 651 DIEVSNALITFYAKCGSIEDARREFCEMPEK-NDVSWNAMITGYSQHG---YGNEAVNLF 706

Query: 519 FELEPINAGP-YIMLSNMYAAC 539
            +++ +   P ++    + +AC
Sbjct: 707 EKMKQVGEMPNHVTFVGVLSAC 728



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/444 (27%), Positives = 213/444 (47%), Gaps = 40/444 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +   G +  +  +F+ MP R   S++  I+GF  K  S   L +FS M ++   
Sbjct: 49  NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS 108

Query: 154 PTDYTHVSALNACA-QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           PT+ +  S L AC+   + +R  +QIH +I+   L  +  + N L  +YAK G I  AR 
Sbjct: 109 PTEISFASVLRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARK 168

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  ++ VSW  MISG+ +NG  ++ I LF EM   G+ P     S++L  C +   
Sbjct: 169 VFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKL 228

Query: 273 ID-----------------------------------DAGRLFHVIKEKDNVCWTTMIVG 297
            D                                    A ++F  ++ KD V + ++I G
Sbjct: 229 FDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISG 288

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             Q G  + AL LF +M  + ++PD  +++S++S+CA   +L  G+ +H   +  G+  D
Sbjct: 289 LAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSD 348

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           ++V  AL+D+Y  C     A  +F    T NVV WN M+  + +     E+  ++ ++  
Sbjct: 349 MIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 418 ENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           + L P+ FT+ S+L  C      + G Q H   I    G   ++   + +I++  +   +
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKT--GFQFNVYVCSVLIDMYAKHGKL 466

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLS 500
           D A  ++++L  + + + W+ L+S
Sbjct: 467 DTAHVILRTLT-EDDVVSWTALIS 489



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 221/465 (47%), Gaps = 38/465 (8%)

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           +AR +   +    IIS N L+  +A++G +   R +FD +  +DSVS+   I+GF+  G+
Sbjct: 135 HARIICHGLLCSPIIS-NPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGY 193

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             EA+ +F  M      PT Y   S L+ C ++     G+Q+H  +         +V NA
Sbjct: 194 EEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNA 253

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L  +Y++      A  +F +M +++ VS+N +ISG  + G     ++LF +M+   L PD
Sbjct: 254 LVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPD 313

Query: 257 EVTVSNILGACFQTGR-----------------------------------IDDAGRLFH 281
            VTV+++L AC   G                                    I  A  +F 
Sbjct: 314 CVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFL 373

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
             + ++ V W  M+V + +     ++  +F +M  + + P++F+  S++ +C  + +L  
Sbjct: 374 TAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDL 433

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +H + +  G   ++ V S LIDMY K G  D A  +   +   +VVSW ++I+GYAQ
Sbjct: 434 GEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQ 493

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +    EAL  + ++L   ++ D+  F S +SAC       +G+    + S V G +  L 
Sbjct: 494 HNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGR-QIHAQSYVSGYSEDLS 552

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               +++L  R   + +A    + +  K +S+ W+ L+S  A  G
Sbjct: 553 IGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISGFAQSG 596



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 185/379 (48%), Gaps = 40/379 (10%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T++  L+ C     L   K++HGKI+    G    + N L D+Y   G++D    +F+ M
Sbjct: 12  TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------- 267
            NR++ SW+ +ISG+++     + +DLF  M    ++P E++ +++L AC          
Sbjct: 72  PNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 268 --------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      + G I  A ++F  +  KD+V W  MI G++QN
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G EE+A+ LF EM +  + P  +  SSV+S C K+     G+ +H      G   +  V 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+ +Y +      A  VF+ M +++ VS+NS+I+G AQ G    AL L+ K+ ++ LK
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLK 311

Query: 422 PDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           PD  T  S+LSAC       +G Q H   I A  GI+  +     +++L    SD+  A 
Sbjct: 312 PDCVTVASLLSACASNGALCKGEQLHSYVIKA--GISSDMIVEGALLDLYVNCSDIKTAH 369

Query: 481 DLIKSLPHKPNSLIWSTLL 499
           ++  +     N ++W+ +L
Sbjct: 370 EMFLT-AQTENVVLWNVML 387


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 381/669 (56%), Gaps = 38/669 (5%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD--------------- 108
           +L+  YA  G L   R +FD M  +++  WN ++S +A+ G  ++               
Sbjct: 139 KLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 109 -----LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                   LFDK+  RD +S+N+ I+G+ + G +   L+++ +M     +    T +S L
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVL 258

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
             CA    L  GK +H   +       +   N L DMY+K G++D A  +F++M  RN+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  MI+GY ++G+    I L Q+M+  G+  D V  ++IL AC ++G +D+   +   I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYI 378

Query: 284 KEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------RPDKFSISS 328
           K  +      VC   M + YT+ G  + A  +F+ M+ +D+          +PD  +++ 
Sbjct: 379 KANNMESNLFVCNALMDM-YTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMAC 437

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++ +CA L++L  G+ +HG  +  G   D  V++AL+D+Y KCGV   A  +F+M+P+++
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +VSW  MI+GY  +G   EA+A ++++    ++PD  +F+S+L AC H+ L E+G   F 
Sbjct: 498 LVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +     I P L+HYACM++LL R+ ++ KA + I++LP  P++ IW  LL  C +  DI
Sbjct: 558 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDI 617

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  E  A  +FELEP N G Y++L+N+YA   +WE+V  +R  +  K ++K    SWIEI
Sbjct: 618 ELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEI 677

Query: 569 DNKVHKFVS-EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
             KV+ FVS  + +HP ++ I   L K+ +K++E G+ P TK  L +  E +K  ++C H
Sbjct: 678 KGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGH 737

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L+  P   T +R+ KN+RVCGDCH   KF S    R I+LRDSNRFHHF  
Sbjct: 738 SEKLAMAFGLLALPPRKT-VRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKN 796

Query: 688 GNCSCKDNW 696
           G CSC+  W
Sbjct: 797 GYCSCRGFW 805



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 117/407 (28%), Positives = 189/407 (46%), Gaps = 31/407 (7%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R    YN  I  F   G    A+++    QK   E   Y+  S L  CA    L  GK++
Sbjct: 64  RQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYS--SVLQLCAGSKSLTDGKKV 121

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  I   N+  +  +   L  +YA  G++ + R +FD M  +N+  WN M+S Y K G  
Sbjct: 122 HSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDF 181

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
           K+ I LF+ M   G+               +  R + A  LF  + ++D + W +MI GY
Sbjct: 182 KESICLFKIMVEKGI---------------EGKRPESASELFDKLCDRDVISWNSMISGY 226

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             NG  E  L ++ +M+   +  D  +I SV+  CA   +L  G+ VH  A+    +  +
Sbjct: 227 VSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRI 286

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             S+ L+DMY KCG  D A  VF  M  RNVVSW SMI GY ++G+   A+ L  ++ +E
Sbjct: 287 NFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKE 346

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +K D     S+L AC  +   + G++  D I A + +  +L     ++++  +   +D 
Sbjct: 347 GVKLDVVATTSILHACARSGSLDNGKDVHDYIKA-NNMESNLFVCNALMDMYTKCGSMDG 405

Query: 479 AVDLIKSL-------------PHKPNSLIWSTLLSVCAMKGDIKHGE 512
           A  +  ++               KP+S   + +L  CA    ++ G+
Sbjct: 406 ANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGK 452



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 139/311 (44%), Gaps = 50/311 (16%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
            +++ C     + L K + S    + +E    F  N LL  Y+K G L  A  +F+KM  
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSTFERRINF-SNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKG-------- 135
           R+++SW ++++ + R G       L  +M       D V+  + +   A  G        
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDV 374

Query: 136 -------------FSREAL--------------QVFSRM-QKD---------RFEPTDYT 158
                        F   AL               VFS M  KD           +P   T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L ACA L  L RGK+IHG I+      +  V NAL D+Y K G +  AR LFD + 
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           +++LVSW +MISGY  +G   + I  F EM+  G+ PDEV+  +IL AC  +G ++   R
Sbjct: 495 SKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 279 LFHVIKEKDNV 289
            F+++K   N+
Sbjct: 555 FFYIMKNDFNI 565



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 50/200 (25%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A T ++  C R   ++  K +  ++  N  E N  F+ N L+  Y K G +  A  +F  
Sbjct: 354 ATTSILHACARSGSLDNGKDVHDYIKANNMESNL-FVCNALMDMYTKCGSMDGANSVFST 412

Query: 85  MPLRDIISW-------------------------------------------------NA 95
           M ++DIISW                                                 NA
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +   R LFD +P +D VS+   I+G+   G+  EA+  F+ M+    EP 
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 156 DYTHVSALNACAQLLDLRRG 175
           + + +S L AC+    L +G
Sbjct: 533 EVSFISILYACSHSGLLEQG 552


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/603 (37%), Positives = 353/603 (58%), Gaps = 36/603 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+  +   G +   R +FD  P  D +++N  I+ +   G   E+ ++F  M+  +  
Sbjct: 178 TALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVL 237

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT  T V  L+AC++L DLR GK++H  +    +  N+ + NA+ DMYA  GE+D A  +
Sbjct: 238 PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGI 297

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  MNNR+++SW  ++SG+                            +N+       G I
Sbjct: 298 FRSMNNRDIISWTTIVSGF----------------------------TNL-------GEI 322

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A   F  + EKD V WT MI GY ++ + ++AL LF  M + +V+PD+F++ SV+++C
Sbjct: 323 DVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTAC 382

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L +L  G+ +        + +DL V +ALIDMY KCG  D A ++F  M  R+  +W 
Sbjct: 383 AHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWT 442

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G A NG   +AL ++  +L+ ++ PD  T++ VLSAC H  L ++G+ +F  +++ 
Sbjct: 443 AMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQ 502

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI P++ HY C+++LL R+  + +A ++I+++P K NS++W  LL+ C +  +    EM
Sbjct: 503 HGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEM 562

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
             + + ELEP N   Y++L N+YAAC RW D+  +R  M  K +KK    S IE++ +VH
Sbjct: 563 VVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVH 622

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +FV+ DR+HP+T+ I  +L K+ + L+ AG+SP+   V  D  EE+K  S+  HSEKLA+
Sbjct: 623 EFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAI 682

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI  P GVT IRI KN+R+C DCH   K  S +  R +I+RD  RFHHF  G CSCK
Sbjct: 683 AFGLINSPPGVT-IRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCK 741

Query: 694 DNW 696
           D W
Sbjct: 742 DYW 744



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 210/484 (43%), Gaps = 112/484 (23%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  RG       +  L    TR   +E  ++L  H+  +  + N  F+H  L+  Y   G
Sbjct: 130 MLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNV-FVHTALVQMYLLCG 188

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           +L  AR +FD  P  D+I+WN ++SA+ + G  ++ R LF  M                 
Sbjct: 189 QLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVM----------------- 231

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
                E  QV          PT  T V  L+AC++L DLR GK++H  +    +  N+ +
Sbjct: 232 -----EDKQVL---------PTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVL 277

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNL------------------------------- 222
            NA+ DMYA  GE+D A  +F  MNNR++                               
Sbjct: 278 ENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDY 337

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  MI GY+++ + K+ ++LF+ MQ   + PDE T+ ++L AC               
Sbjct: 338 VSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTY 397

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                               F+ G +D A  +F  + ++D   WT MIVG   NG  E A
Sbjct: 398 IDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKA 457

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL------GVDDDLLVS 361
           L +F+ ML   + PD+ +   V+S+C      + G V  G+   L      G++ ++   
Sbjct: 458 LDMFSNMLKASILPDEITYIGVLSACT-----HTGLVDKGRKYFLRMTSQHGIEPNIAHY 512

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
             L+D+  + G   +A+ V   MP + N + W +++ G     +   A  +  ++L+  L
Sbjct: 513 GCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILE--L 570

Query: 421 KPDS 424
           +PD+
Sbjct: 571 EPDN 574



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 252 GLNPDEVTVSNILGAC--FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GLN + V  + ++  C   + G    A RLF  I E +   W TMI GY++    +  + 
Sbjct: 66  GLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVS 125

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           L+ EML   V+PD+++   +     +  +L +G+ +HG  +  G+  ++ V +AL+ MY 
Sbjct: 126 LYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYL 185

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            CG  D A  VF++ P  +V++WN +I+ Y + G+  E+  L+  +  + + P + T V 
Sbjct: 186 LCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVL 245

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC        G+     +     +  +L     MI++     ++D A+ + +S+ ++
Sbjct: 246 VLSACSKLKDLRTGKKVHSYVKNCK-VESNLVLENAMIDMYADCGEMDSALGIFRSMNNR 304

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM---YAACGRWEDVA 546
            + + W+T++S     G+I      AR+ F+  P     Y+  + M   Y    R+++  
Sbjct: 305 -DIISWTTIVSGFTNLGEID----VARNYFDKMP--EKDYVSWTAMIDGYIRSNRFKEAL 357

Query: 547 SIRSSMKSKNVK 558
            +  +M++ NVK
Sbjct: 358 ELFRNMQATNVK 369


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/627 (38%), Positives = 356/627 (56%), Gaps = 38/627 (6%)

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +  R +    P R+ VS+ + I+G A  G    AL  F  M+++   P D+T   A  A 
Sbjct: 9   ESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAV 68

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           A L     GKQIH   V      +VFV  +  DMY K    D AR LFD +  RNL +WN
Sbjct: 69  ASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWN 128

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------- 267
             IS  + +G+P++ I+ F E + +  +P+ +T    L AC                   
Sbjct: 129 AFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS 188

Query: 268 -FQT------GRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
            F T      G ID  G+         +F  +  K+ V W +++  Y QN ++E A +L+
Sbjct: 189 GFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLY 248

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
                + V    F ISSV+S+CA +A L  G+ +H  AV   V+  + V SAL+DMY KC
Sbjct: 249 LRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKC 308

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--KPDSFTFVS 429
           G  +D+   F+ MP +N+V+ NS+I GYA  GQ   ALAL++++        P+  TFVS
Sbjct: 309 GCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVS 368

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           +LSAC  A   E G   FDS+ + +GI P  +HY+C++++LGR+  V++A + IK +P +
Sbjct: 369 LLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQ 428

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P   +W  L + C M G  + G +AA +LF+L+P ++G +++LSN +AA GRW +  ++R
Sbjct: 429 PTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVR 488

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
             +K   +KK A YSWI + N+VH F ++DR+H   + I   L+KL  +++ AG+ P+ K
Sbjct: 489 EELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLK 548

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
           L L+D +EEEK   + +HSEKLALA+ L+  P  V PIRI KN+R+CGDCH F KF S  
Sbjct: 549 LSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSV-PIRITKNLRICGDCHSFFKFVSGS 607

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + R II+RD+NRFH F  G CSCKD W
Sbjct: 608 VKREIIVRDNNRFHRFKDGICSCKDYW 634



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 177/397 (44%), Gaps = 48/397 (12%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-- 257
           MY+K    + AR +      RN+VSW  +ISG  +NG     +  F EM+  G+ P++  
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 258 --------------VTVSNILGACFQTGRI-------------------DDAGRLFHVIK 284
                         VT   I     + GRI                   DDA +LF  I 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           E++   W   I     +G+  +A+  F E    D  P+  +  + +++C+    L  G  
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQ 180

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  +  G D D+ V + LID Y KC     +  +F  M T+N VSW S++  Y QN +
Sbjct: 181 LHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE 240

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY 463
           D +A  LY +  ++ ++   F   SVLSAC      E G++ H  ++ A   +  ++   
Sbjct: 241 DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC--VERTIFVG 298

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + ++++ G+   ++ +      +P K N +  ++L+   A +G +   +MA     E+ P
Sbjct: 299 SALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQV---DMALALFEEMAP 354

Query: 524 INAGP---YIMLSNMYAACGRW---EDVASIRSSMKS 554
              GP   Y+   ++ +AC R    E+   I  SM+S
Sbjct: 355 RGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 391



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 108/224 (48%), Gaps = 33/224 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+ FY K  ++  +  +F +M  ++ +SW +L++A+ ++                   
Sbjct: 198 NGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHE----------------- 240

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                           +A  ++ R +KD  E +D+   S L+ACA +  L  G+ IH   
Sbjct: 241 --------------DEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHA 286

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V   +   +FV +AL DMY K G I+ +   FD M  +NLV+ N +I GY   GQ    +
Sbjct: 287 VKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMAL 346

Query: 243 DLFQEM--QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
            LF+EM  +  G  P+ +T  ++L AC + G +++  ++F  ++
Sbjct: 347 ALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMR 390



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 38/240 (15%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  +EL + + +H      E  T F+ + L+  Y K G +  +   FD+MP +++++
Sbjct: 270 CAGMAGLELGRSIHAHAVKACVE-RTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT 328

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
            N+L+  +A  G V    ALF++M  R                                 
Sbjct: 329 RNSLIGGYAHQGQVDMALALFEEMAPRGCGP----------------------------- 359

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            P   T VS L+AC++   +  G +I   +     +       + + DM  + G +++A 
Sbjct: 360 TPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAY 419

Query: 212 WLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----DEVTVSNILGA 266
               +M  +  +S W  + +    +G+P+  + L     L  L+P    + V +SN   A
Sbjct: 420 EFIKKMPIQPTISVWGALQNACRMHGKPQ--LGLLAAENLFKLDPKDSGNHVLLSNTFAA 477


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/637 (36%), Positives = 378/637 (59%), Gaps = 37/637 (5%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + +   + + R LFD+MP R  V++N+ I+   ++G ++EA++++  M  +   P 
Sbjct: 41  LIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPD 100

Query: 156 DYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            YT  +   A +++   R G++ HG  +V+G    + FV   + DMYAK G++  AR++F
Sbjct: 101 AYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVF 160

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--- 271
           DR+ ++++V +  +I GY + G   + +++F++M    + P+E T++++L +C   G   
Sbjct: 161 DRVLDKDVVLFTALIVGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLV 220

Query: 272 --------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                            ++D+ ++F+ +    +V WT+ IVG  
Sbjct: 221 NGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLV 280

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG+EE AL +F EM+   + P+ F+ SS++ +C+ LA L  G+ +H   V LGVD +  
Sbjct: 281 QNGREEIALSMFREMIRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKY 340

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V +ALI +Y KCG  + A +VF  +   +VVS N+MI  YAQNG   EAL L++++ +  
Sbjct: 341 VDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLG 400

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KP+  TF+S+L AC +A L E G   F  I   H I  + DHY CMI+LLGR+   ++A
Sbjct: 401 HKPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEA 460

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             LI+     P+ + W TLL+ C + G+++  E   + + +  P + G +I+L+N+YA+ 
Sbjct: 461 AMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASA 519

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           G+W++V  ++S+ +   +KK  A SW++ID +VH F++ D +HP    I E L +LI+K+
Sbjct: 520 GKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKV 579

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
              G++P+TK VL D +EE+K+ ++ YHSEKLA+A+ L K     T IRI KN+RVCGDC
Sbjct: 580 ITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDC 639

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H ++KF S + GR II RD+ RFHHF GG CSCKD W
Sbjct: 640 HSWIKFVSLLTGRDIIARDAKRFHHFKGGICSCKDYW 676


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/637 (37%), Positives = 373/637 (58%), Gaps = 49/637 (7%)

Query: 108 DLRALFDKMPIRDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +LR++F K   + SV S+N+ IA FA  G S +AL  FS M+K    P   T    + +C
Sbjct: 37  NLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSC 96

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           + L DL  GKQIH +  V   G ++FV +AL DMY+K G ++ AR LFD +  RN+VSW 
Sbjct: 97  SSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWT 156

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLL-----------GLNPDEVTVSNILGACFQT----- 270
            MISGY++N + ++ + LF+E  L+           G+  D V +  ++ AC +      
Sbjct: 157 SMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV 216

Query: 271 ------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                         G I  + ++F  ++E D   W ++I  Y Q
Sbjct: 217 TECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQ 276

Query: 301 NGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           NG   +A  LF++M+   +VR +  ++S+V+ +CA   +L  G+ +H + V + ++D+L+
Sbjct: 277 NGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLV 336

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V ++++DMYCKCG  + A   F+ +  +NV SW  M+ GY  +G   EA+ ++ ++++  
Sbjct: 337 VGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCG 396

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KP+  TFVSVL+AC HA L + G + F+ +     + P ++HY+CM++LLGR+  + +A
Sbjct: 397 IKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEA 456

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             LI+ +  KP+ ++W +LL  C +  +++ GE++AR LF+L+P N G Y++LSN+YA  
Sbjct: 457 YGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADA 516

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRW+DV  +R  MK+  + K   YS +E   +VH F+  D+ HP+ E IYE L +L  KL
Sbjct: 517 GRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKL 576

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           QE G+ PN   VL+D   EEK   +  HSEKLA+A+ ++    G + I+I+KN+R+CGDC
Sbjct: 577 QEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPG-SVIQIIKNLRICGDC 635

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +K  S I+ R I++RDS RFHHF  G CSC D W
Sbjct: 636 HFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 176/404 (43%), Gaps = 59/404 (14%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ + D+   K++     +  Y  +  F+ + L+  Y+K G L  AR LFD++P R+++S
Sbjct: 96  CSSLYDLCAGKQIHQQAFVFGYGSDI-FVASALIDMYSKCGYLNDARKLFDEIPERNVVS 154

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W +++S + ++   ++   LF +  + D   Y+                     +     
Sbjct: 155 WTSMISGYVQNERAREAVFLFKEFLLVDETDYD--------------------EIVGVGV 194

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
                     ++ACA++      + +HG  V     G + V N L D YAK GEI  +R 
Sbjct: 195 GVDSVLLGCVISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRK 254

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQT- 270
           +FD M   ++ SWN +I+ Y +NG   +   LF +M   G +  + VT+S +L AC  + 
Sbjct: 255 VFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314

Query: 271 ----------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                             GR++ A + F  +K K+   WT M+ 
Sbjct: 315 ALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVA 374

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK-AVVLGVD 355
           GY  +G  ++A+ +F EM+   ++P+  +  SV+++C+    L  G     K      V+
Sbjct: 375 GYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVE 434

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
             +   S ++D+  + G   +A+ +   M  + + + W S++  
Sbjct: 435 PGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGA 478


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/639 (36%), Positives = 366/639 (57%), Gaps = 52/639 (8%)

Query: 60  FLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
            + N++L F      G + YAR LFD +P   + SWN +   ++R    +   +L+ +M 
Sbjct: 47  IIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEML 106

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            R+ V  +     F  KGF+R                               + L+ G++
Sbjct: 107 ERN-VKPDCYTYPFLFKGFTRS------------------------------VALQLGRE 135

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  +V   L  NVF  NAL +MY+  G ID AR +FD     ++V+WN MISGY +   
Sbjct: 136 LHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNR--- 192

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                          +  D ++ + I+     TG++D A + FH + E+D+V WT MI G
Sbjct: 193 ---------------IKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDG 237

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y +    ++AL+LF EM +  ++PD+F++ SV+++CA+L +L  G+ +        V +D
Sbjct: 238 YLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKND 297

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +ALIDMY KCG  + A ++FN +P R+  +W +M+ G A NG   EAL ++ ++L+
Sbjct: 298 TFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLK 357

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            ++ PD  T+V VLSAC H  + + G+  F S++A HGI P++ HY CM++LLG++  + 
Sbjct: 358 ASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLK 417

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A ++IK++P KPNS++W  LL  C +  D +  E A   + ELEP N   Y++  N+YA
Sbjct: 418 EAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYA 477

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           AC +W+ +  +R  M  + +KK    S IE++  VH+FV+ D++HP+T+ IY +L+K+  
Sbjct: 478 ACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTS 537

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            L+ AG+SPNT  V  D  EE+K  ++  HSEKLA+A+ LI    GVT IRI+KN+R+C 
Sbjct: 538 DLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVT-IRIVKNLRMCI 596

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   K  S +  R +I+RD  RFHHF  G+CSCKD W
Sbjct: 597 DCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/273 (32%), Positives = 137/273 (50%), Gaps = 18/273 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
            Y  L    TR   ++L + L  H+ + +   +  F HN L++ Y+  G +  AR +FD 
Sbjct: 116 TYPFLFKGFTRSVALQLGRELHCHV-VKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 85  MPLRDIISWNALLSAHAR-----------------SGSVQDLRALFDKMPIRDSVSYNTA 127
               D+++WNA++S + R                 +G V   R  F KMP RD VS+   
Sbjct: 175 SCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAM 234

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           I G+      +EAL +F  MQ  + +P ++T VS L ACAQL  L  G+ I   I    +
Sbjct: 235 IDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKV 294

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             + FV NAL DMY K G ++ A  +F+ +  R+  +W  M+ G   NG  ++ +++F +
Sbjct: 295 KNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQ 354

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           M    + PDEVT   +L AC  TG +D+  + F
Sbjct: 355 MLKASVTPDEVTYVGVLSACTHTGMVDEGKKFF 387



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/305 (24%), Positives = 132/305 (43%), Gaps = 52/305 (17%)

Query: 252 GLNPDEVTVSNILGACF--QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           G+  + +  + IL  C   + G +  A +LF  I E     W  M  GY++    +  + 
Sbjct: 41  GIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGYSRIACPKLGVS 100

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           L+ EML  +V+PD ++   +     +  +L  G+ +H   V  G+D ++   +ALI+MY 
Sbjct: 101 LYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYS 160

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL----------------------- 406
            CG+ D A  +F+M    +VV+WN+MI+GY +  +D+                       
Sbjct: 161 LCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYF 220

Query: 407 -------------------------EALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
                                    EAL L+ ++    +KPD FT VSVL+AC      E
Sbjct: 221 HKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALE 280

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G+     I        +    A +I++  +  +V+ A+ +  +LP + +   W+ ++  
Sbjct: 281 LGEWIRTYIDKNKVKNDTFVGNA-LIDMYFKCGNVEMALSIFNTLPQR-DKFTWTAMVVG 338

Query: 502 CAMKG 506
            A+ G
Sbjct: 339 LAING 343


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/726 (33%), Positives = 380/726 (52%), Gaps = 78/726 (10%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-----MDLNFYEPNTTFLHNRL 65
            D +   G +        L+  C+ V D+   K+L S+     M L++       +   L
Sbjct: 232 FDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDY------IMEGSL 285

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L  Y KSG +  A  +FD     +++ WN +L A+   G + DL   FD           
Sbjct: 286 LDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY---GQIDDLAKSFD----------- 331

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                            +F RM      P  +T+   L  C    ++  G+QIH   +  
Sbjct: 332 -----------------IFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN 374

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               +++V   L DMY+K G +DKA+ + D +  +++VSW  MI+GY+++   K+ ++ F
Sbjct: 375 GFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETF 434

Query: 246 QEMQLLGLNPDEVTVSNILGACF-----------------------------------QT 270
           +EMQ  G+ PD + +++ + AC                                    + 
Sbjct: 435 KEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARC 494

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G   +A   F  I+ K+ + W  +I G+ Q+G  E+AL +F +M     + + F+  S +
Sbjct: 495 GISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSI 554

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+ A LA +  G+ +H + +  G   +  +S+ALI +Y KCG  +DA   F  M  RN V
Sbjct: 555 SASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEV 614

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN++I   +Q+G+ LEAL L+D++ Q+ LKP   TFV VL+AC H  L E G  +F S+
Sbjct: 615 SWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSM 674

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S  HGI P  DHYAC++++LGR+  +D+A   ++ +P   +S++W TLLS C +  +++ 
Sbjct: 675 SNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEI 734

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE AA+HL ELEP ++  Y++LSN YA  G+W     IR  MK + V+K    SWIE+ N
Sbjct: 735 GEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKN 794

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH F   DR HP  + IY  LS L  +L + G+      + H+ ++E K  +   HSEK
Sbjct: 795 VVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEK 854

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ L+  P    P+R++KN+RVC DCH +MKF S ++GR I+LRD  RFHHF  G+C
Sbjct: 855 LAVAFGLMSLP-SCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSC 913

Query: 691 SCKDNW 696
           SC D W
Sbjct: 914 SCGDYW 919



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 138/450 (30%), Positives = 230/450 (51%), Gaps = 41/450 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+S + R  S +    +F  M   DSV++NT I+G A  G    AL +F  MQ     
Sbjct: 182 NALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLS 241

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L AC+ + DLR+GKQ+H  ++   +  +  +  +L D+Y K G+I++A  +
Sbjct: 242 PDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQI 301

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD  +  N+V WNLM+  Y +     K  D+F  M   G+ P++ T   +L  C  TG I
Sbjct: 302 FDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEI 361

Query: 274 -----------------------------------DDAGRLFHVIKEKDNVCWTTMIVGY 298
                                              D A R+  +I+EKD V WT+MI GY
Sbjct: 362 GLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGY 421

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q+   ++AL  F EM +  + PD   ++S +S+CA + +++ G  +H +  V G   D+
Sbjct: 422 VQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADV 481

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + + L+ +Y +CG++ +A++ F  +  +  ++WN +I+G+AQ+G   EAL ++ K+ Q 
Sbjct: 482 SIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQA 541

Query: 419 NLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             K + FTFVS +SA  + AD+ +  Q H   I    G T   +    +I+L G+   ++
Sbjct: 542 GAKYNVFTFVSSISASANLADIKQGKQIHARVIKT--GYTSETEISNALISLYGKCGSIE 599

Query: 478 KA-VDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A +D  +    K N + W+T+++ C+  G
Sbjct: 600 DAKMDFFEMT--KRNEVSWNTIITCCSQHG 627



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 214/479 (44%), Gaps = 68/479 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  YAK G +  AR +F+++ +RD +SW A+LS                        
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLS------------------------ 116

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                  G+A  G   EA++++  M +    PT Y   S L+AC +    + G+ IH ++
Sbjct: 117 -------GYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQV 169

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                    FV NAL  +Y +      A  +F  M   + V++N +ISG+ + G   + +
Sbjct: 170 YKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRAL 229

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            +F EMQL GL+PD VT++++L AC                                   
Sbjct: 230 GIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLY 289

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            ++G I++A ++F      + V W  M+V Y Q      +  +F  ML+  VRP+KF+  
Sbjct: 290 VKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYP 349

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            ++ +C     +  G+ +H   +  G   D+ VS  LIDMY K G  D A  + +M+  +
Sbjct: 350 CMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK 409

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSW SMI GY Q+    EAL  + ++    + PD+    S +SAC       +G +  
Sbjct: 410 DVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQG-SQI 468

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            +   V G +  +  +  ++ L  R     +A    +++ HK   + W+ L+S  A  G
Sbjct: 469 HARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISGFAQSG 526



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 119/478 (24%), Positives = 220/478 (46%), Gaps = 62/478 (12%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           M  R + S+N  +AGF       + L +F+   +            AL AC      RR 
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRG--SGRRW 58

Query: 176 K---QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
               +IH K ++  L G   + N L D+YAK G + +AR +F+ ++ R+ VSW  ++SGY
Sbjct: 59  PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGY 118

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK------ 286
            +NG  ++ + L++EM   G+ P    +S+IL AC +T  +   GRL HV   K      
Sbjct: 119 AQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKT-ELFQLGRLIHVQVYKQGFFSE 177

Query: 287 ------------------------------DNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                                         D+V + T+I G+ Q G  + AL +F+EM  
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             + PD  +I+S++++C+ +  L  G+ +H   +  G+  D ++  +L+D+Y K G  ++
Sbjct: 238 SGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEE 297

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+     NVV WN M+  Y Q     ++  ++ ++L   ++P+ FT+  +L  C H
Sbjct: 298 ALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTH 357

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
                 G+    S++  +G    +     +I++  +   +DKA  ++  +  K + + W+
Sbjct: 358 TGEIGLGE-QIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEK-DVVSWT 415

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           ++++     G ++H E     L   + +             ACG W D   + S++ +
Sbjct: 416 SMIA-----GYVQH-EFCKEALETFKEMQ------------ACGIWPDNIGLASAISA 455


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 368/588 (62%), Gaps = 6/588 (1%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQ 168
           R++FD++P  D+  +NT I  + N    +E++ +F +M+     P D Y+    + AC +
Sbjct: 58  RSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGR 117

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L D   G+++H +++   LG ++FV  AL +MYAK G+I+ AR + D M + +LV +N++
Sbjct: 118 LKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVL 177

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++ Y++ G+     DLF  M       D V+ + ++      G +  A +LF    E+D 
Sbjct: 178 LAEYVRVGEINLAHDLFDRMP----ERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDL 233

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + W++MI  Y +  +  +AL LF+EM   +V PDK ++ SV+S+C  + +L  G+++H  
Sbjct: 234 ISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHEC 293

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
                ++ DL + ++L+DMY KCG  D++  VFN M  R+V +W++MI G A +G    A
Sbjct: 294 IERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELA 353

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L  + K++ E++KP+  TF+ VLSAC H  L + G  +F S+S V+ ++P ++HY C+++
Sbjct: 354 LDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVD 413

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +LGR+  + +A++LIKS+P  P++++W  LL  C +  +++  E A  +L ELEP   G 
Sbjct: 414 ILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGN 473

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++LSN+Y+    W+ V ++R  MK+ N++K    S IE+DN VH+FV+ D++HPE++ I
Sbjct: 474 YVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKI 533

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
              LS++  +L+  G++P T  VL D  E+EK  ++ +HSEKLA+A+ L+    G T IR
Sbjct: 534 LRMLSEITARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGST-IR 592

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I+KN+RVC DCH+ +K  S    R II+RD NRFHHFV G+CSCKD W
Sbjct: 593 IVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 11/257 (4%)

Query: 27  TQLVLDCTRVNDVELAKRL---QSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           T L+    +  D+E+A+ +    +H DL  Y        N LL  Y + G++  A DLFD
Sbjct: 144 TALIEMYAKFGDIEIARNILDEMAHPDLVPY--------NVLLAEYVRVGEINLAHDLFD 195

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP RD++SWN ++  HA  G V   + LFD+   RD +S+++ IA +A    S EAL++
Sbjct: 196 RMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRL 255

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  MQ     P   T VS L+AC  +  L  GK IH  I    +  ++ +  +L DMYAK
Sbjct: 256 FHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAK 315

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G+ID +  +F+ MNNR++ +W+ MI G   +G  +  +D F +M    + P++VT   +
Sbjct: 316 CGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375

Query: 264 LGACFQTGRIDDAGRLF 280
           L AC   G +D+    F
Sbjct: 376 LSACSHIGLVDEGWTYF 392



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 138/321 (42%), Gaps = 68/321 (21%)

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-D 322
           L AC     +  A  +F  I   D   W TMI  Y  +   ++++ LF +M  ++  P D
Sbjct: 45  LFACSSANDLLYARSVFDEIPSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPID 104

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-------VTD 375
            +S+S V+ +C +L    +GQ +H + + +G+  DL V +ALI+MY K G       + D
Sbjct: 105 SYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILD 164

Query: 376 D------------------------AWTVFNMMPTRNVVSWNSMING------------- 398
           +                        A  +F+ MP R++VSWN+MI+G             
Sbjct: 165 EMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKL 224

Query: 399 ------------------YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
                             YA+  Q  EAL L+ ++   N+ PD  T VSVLSAC      
Sbjct: 225 FDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGAL 284

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
             G+   + I   + I   L     ++++  +  D+D ++ +   + ++ +   WS ++ 
Sbjct: 285 GMGKMIHECIER-NRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNR-DVFAWSAMIM 342

Query: 501 VCAMKGDIKHGEMAARHLFEL 521
             A  G    GE+A  H  ++
Sbjct: 343 GLANHG---FGELALDHFSKM 360


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/646 (37%), Positives = 363/646 (56%), Gaps = 49/646 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL SA+AR G +   + +FD+   RD VS+N  +  +A  G   EA  +F+RM  +   
Sbjct: 264 TALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIS 323

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+  T V+A   C+    LR G+ IHG  +   L  ++ + NAL DMY + G  ++AR L
Sbjct: 324 PSKVTLVNASTGCS---SLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHL 380

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           F R+   N VSWN MI+G  + GQ K+ ++LFQ MQL G+ P   T  N+L A       
Sbjct: 381 FKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEE 439

Query: 271 ------------------------------------GRIDDAGRLFH---VIKEKDNVCW 291
                                               G ID+A   F    +    D V W
Sbjct: 440 ARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I   +Q+G  + AL  F  M    V P++ +  +V+ +CA  A+L  G++VH     
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRH 559

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALA 410
            G++ +L V++AL  MY +CG  + A  +F  +   R+VV +N+MI  Y+QNG   EAL 
Sbjct: 560 SGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALK 619

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++ QE  +PD  +FVSVLSAC H  L + G   F S+   +GI PS DHYAC +++L
Sbjct: 620 LFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVL 679

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +  A +LI+ +  KP  L+W TLL  C    D+  G +A   + EL+P +   Y+
Sbjct: 680 GRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYV 739

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+ A  G+W++ A +R+ M+S+ ++K A  SWIEI ++VH+FV+ DR+HP +E IY 
Sbjct: 740 VLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYR 799

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL +L  +++E G+ P+T+LVL    E EK + +C HSE+LA+A  ++        +R+M
Sbjct: 800 ELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSS--TDTVRVM 857

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   KF S I+ + I++RD++RFHHFV G+CSC D W
Sbjct: 858 KNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 160/610 (26%), Positives = 265/610 (43%), Gaps = 106/610 (17%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  + +  S+ D+  +F ++ +RD  S+ T I  +   G ++ A+ +F RMQ++   
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T ++ L ACA+L DL +G+ IH  IV   L G   + N L  +Y   G +  A  L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------------- 259
           F++M  R+LVSWN  I+   ++G     ++LFQ MQL G+ P  +T              
Sbjct: 186 FEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQA 244

Query: 260 -----------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                            VS  L + + + G +  A  +F    E+D V W  M+  Y Q+
Sbjct: 245 QAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQH 304

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   +A +LF  ML E + P K ++ +  + C   +SL  G+++HG A+  G+D D+++ 
Sbjct: 305 GHMSEAALLFARMLHEGISPSKVTLVNASTGC---SSLRFGRMIHGCALEKGLDRDIVLG 361

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY +CG  ++A  +F  +P  N VSWN+MI G +Q GQ   A+ L+ ++  E + 
Sbjct: 362 NALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMA 420

Query: 422 PDSFTFVSVLSACL----HADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           P   T++++L A       A     G+  H   +S  +   P++     ++ +      +
Sbjct: 421 PVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIG--TAVVKMYASCGAI 478

Query: 477 DKAV------------------DLIKSLPH-------------------KPNSLIWSTLL 499
           D+A                    +I SL                      PN +    +L
Sbjct: 479 DEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVL 538

Query: 500 SVCAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
             CA    +  GE+   HL    +E  N      L++MY  CG  E    I         
Sbjct: 539 DACAGAAALTEGEIVHDHLRHSGMES-NLFVATALASMYGRCGSLESAREI--------- 588

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
                +  + ++  V  F +    + +  +  E L KL  ++Q+ G  P       D Q 
Sbjct: 589 -----FEKVAVERDVVIFNAMIAAYSQNGLAGEAL-KLFWRMQQEGSRP-------DEQS 635

Query: 618 EEKVKSICYH 627
              V S C H
Sbjct: 636 FVSVLSACSH 645



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 63/399 (15%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L +G++IH +IV  +LG    + N L  +Y K   +     +F R+  R+  SW  +I+ 
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---------------- 275
           Y ++GQ K+ I +F  MQ  G+  D VT   +L AC + G +                  
Sbjct: 103 YTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGK 162

Query: 276 ---AGRLFHVIK---------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
              A  L H+                 E+D V W   I    Q+G    AL LF  M  E
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFEKMERDLVSWNAAIAANAQSGDLGIALELFQRMQLE 222

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            VRP + ++   ++ C   A++   Q +H      G++  L+VS+AL   Y + G    A
Sbjct: 223 GVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQA 279

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC--- 434
             VF+    R+VVSWN+M+  YAQ+G   EA  L+ ++L E + P   T V+  + C   
Sbjct: 280 KEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSL 339

Query: 435 -----LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
                +H    E+G +    +               ++++  R    ++A  L K +P  
Sbjct: 340 RFGRMIHGCALEKGLDRDIVLGNA------------LLDMYTRCGSPEEARHLFKRIP-- 385

Query: 490 PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE-LEPINA 526
            N++ W+T+++  + KG +K   E+  R   E + P+ A
Sbjct: 386 CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRA 424



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 34/141 (24%)

Query: 30  VLD-CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL- 87
           VLD C     +   + +  H+  +  E N  F+   L   Y + G L  AR++F+K+ + 
Sbjct: 537 VLDACAGAAALTEGEIVHDHLRHSGMESNL-FVATALASMYGRCGSLESAREIFEKVAVE 595

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD++ +NA+                               IA ++  G + EAL++F RM
Sbjct: 596 RDVVIFNAM-------------------------------IAAYSQNGLAGEALKLFWRM 624

Query: 148 QKDRFEPTDYTHVSALNACAQ 168
           Q++   P + + VS L+AC+ 
Sbjct: 625 QQEGSRPDEQSFVSVLSACSH 645


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/638 (36%), Positives = 355/638 (55%), Gaps = 73/638 (11%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIR--DSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
            L+  +A+   + +   LF  +     + V +   + G+A  G   +A++ F  M  +  
Sbjct: 252 GLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGV 311

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           E   +T  S L AC+ +     G+Q+HG IV    G N +V++AL DMYAK G++  A+ 
Sbjct: 312 ESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKR 371

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           + + M + ++VSWN MI G +++G  ++ I LF++M    +  D  T  ++L  C   GR
Sbjct: 372 VLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCI-VGR 430

Query: 273 IDD----------------------------------AGRLFHVIKEKDNVCWTTMIVGY 298
           ID                                   A  +F  + EKD + WT+++ GY
Sbjct: 431 IDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGY 490

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           TQNG  E++L  F +M    V PD+F ++S++S+CA+L  L  G+ VH   + LG+   L
Sbjct: 491 TQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSL 550

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V+++L+ MY KCG  DDA  +F  M  R+V++W ++I GYA+NG+  ++L         
Sbjct: 551 SVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSL--------- 601

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
                                      +F  +  ++GI P  +HYACMI+L GR   +D+
Sbjct: 602 --------------------------KYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDE 635

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A +++  +  KP++ +W  LL+ C + G+++ GE AA +LFELEP+NA PY+MLSNMY A
Sbjct: 636 AKEILNQMDVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLA 695

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +W+D A IR  MKSK + K    SWIE+++++H F+SEDR HP    IY ++ ++I++
Sbjct: 696 ARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRR 755

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++E G+ P+    LHD   E K   + YHSEKLA+A+ L+  P G  PIRI KN+RVCGD
Sbjct: 756 IKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKLAVAFGLLASPPG-APIRIFKNLRVCGD 814

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  MK+ S +  R IILRDSN FHHF  G CSC+D W
Sbjct: 815 CHSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/539 (29%), Positives = 270/539 (50%), Gaps = 45/539 (8%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
            + F  N+LL+  +KSG++  AR+LFDKM  RD  +WN ++S +A  G + + R LF+  
Sbjct: 113 QSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGF 172

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
             R S+++++ I+G+   G   EA  +F RM+ +  +P+ YT  S L  C+ L  +++G+
Sbjct: 173 SSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGE 232

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLK 234
            IHG +V      NV+V   L DMYAK   I +A  LF  +  N  N V W  M++GY +
Sbjct: 233 MIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQ 292

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------- 267
           NG   K I+ F+ M   G+  ++ T  +IL AC                           
Sbjct: 293 NGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYV 352

Query: 268 --------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                    + G +  A R+   +++ D V W +MIVG  ++G EE+A++LF +M + ++
Sbjct: 353 QSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNM 412

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           + D ++  SV++ C  +     G+ VH   +  G ++  LVS+AL+DMY K    + A+ 
Sbjct: 413 KIDHYTFPSVLNCC--IVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYA 470

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF  M  ++V+SW S++ GY QNG   E+L  +  +    + PD F   S+LSAC    L
Sbjct: 471 VFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTL 530

Query: 440 FERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            E G Q H D I    G+  SL     ++ +  +   +D A  +  S+ H  + + W+ L
Sbjct: 531 LEFGKQVHSDFIKL--GLRSSLSVNNSLVTMYAKCGCLDDADAIFVSM-HVRDVITWTAL 587

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYAACGRWEDVASIRSSMKSK 555
           +   A  G  +      + + ++  I  GP  Y  + +++   G+ ++   I + M  K
Sbjct: 588 IVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVK 646



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 114/214 (53%), Gaps = 2/214 (0%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+  +A++  +    A+F+KM  +D +S+ + + G+   G   E+L+ F  M+     
Sbjct: 453 NALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVS 512

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   S L+ACA+L  L  GKQ+H   +   L  ++ V N+L  MYAK G +D A  +
Sbjct: 513 PDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAI 572

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQTGR 272
           F  M+ R++++W  +I GY +NG+ +  +  FQ+M ++ G+ P     + ++    + G+
Sbjct: 573 FVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGK 632

Query: 273 IDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKEE 305
           +D+A  + + +  K D   W  ++     +G  E
Sbjct: 633 LDEAKEILNQMDVKPDATVWKALLAACRVHGNLE 666



 Score = 46.6 bits (109), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 19/158 (12%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  +E  K++ S   +     ++  ++N L+  YAK G L  A  +F  M +RD+I+
Sbjct: 525 CAELTLLEFGKQVHSDF-IKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVIT 583

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVS-----YNTAIAGFANKGFSREALQVFSRM 147
           W AL+  +AR+G  +D    F +M     +      Y   I  F   G   EA ++ ++M
Sbjct: 584 WTALIVGYARNGKGRDSLKYFQQMKKIYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQM 643

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                +P      + L AC          ++HG + +G
Sbjct: 644 D---VKPDATVWKALLAAC----------RVHGNLELG 668


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/644 (36%), Positives = 374/644 (58%), Gaps = 20/644 (3%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           +F    +L  YA+SG L  A+ +FD+MP   + SW ALLSA A SG  ++ + LFD M  
Sbjct: 23  SFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQE 82

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD +++   +   A      +A   F +M +   +   +T + A NA        RG+  
Sbjct: 83  RDLIAWTIMLTVLATFSNIEDAKYHFDQMPER--DLVAWTAMLAANA-------ERGQME 133

Query: 179 HGKIVVGNLGG-NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           + +     +   N+F   +L   Y + G++  A  +FD M   NLV+W  M++GY  +G 
Sbjct: 134 NARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNLVAWTAMLTGYSLSGD 193

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
             +    F  M       D +  + +L A    G +     +F  + E+D + W TM+  
Sbjct: 194 VVRAKRAFDSMP----ERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAA 249

Query: 298 YTQNGKEEDALILFNEM-----LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
             +N   E++  LF+ M     LS+ + P++ +  +++ +C+ L +L  G+ +H      
Sbjct: 250 LVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAER 309

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G D DL+VS+AL++ Y +CG   DA  VF+ M  R+V+SW+SMI+ +AQ G+  EA+ LY
Sbjct: 310 GFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELY 369

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L E   PD   F+SVL AC ++ + E   + F SI     + P+L+HYACM+++LGR
Sbjct: 370 HRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGR 429

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +  A DL++ +P  P  L++ T+LS C +  D++ GE AA  +FEL+P N+ PYI L
Sbjct: 430 AGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITL 489

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           +N+Y+A  R +D A IR  M+ + +KK    SWIE+ ++VH+F++ D+ HP+ + IY E+
Sbjct: 490 ANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEI 549

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L ++++EAG+  +TK+VL D +E+EK   + YHSEKLA+A+ LI  P G  P+RI+KN
Sbjct: 550 QRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPG-APLRIVKN 608

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH   K  S + GR I++RD+NRFHHF  G CSC D W
Sbjct: 609 LRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/410 (22%), Positives = 174/410 (42%), Gaps = 50/410 (12%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           M+ + G +++AR +FD + +R+  SW +M+S Y ++G       +F  M    L     +
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLG----S 56

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            + +L A   +G  ++A  LF  ++E+D + WT M+         EDA   F++M   D+
Sbjct: 57  WTALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDL 116

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAW 378
                    V  +    A+   GQ+ + +     + +  L S ++L+  Y + G    A 
Sbjct: 117 ---------VAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAG 167

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VF+ MP  N+V+W +M+ GY+ +G  + A   +D + + +L      + ++LSA     
Sbjct: 168 RVFDSMPEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDL----IAWTAMLSAYAF-- 221

Query: 439 LFERGQNHFDSISAVHGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPH-------- 488
                  H      +    P  D   +A M+  L  +  ++++ +L   +P         
Sbjct: 222 -----NGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGM 276

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            PN + + TLL  C+  G +  G       A   F+ + + +     L N Y  CG   D
Sbjct: 277 TPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNA---LVNFYGRCGALGD 333

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
              +   M+ ++V      SW    + +  F    R     E+ +  LS+
Sbjct: 334 AKIVFDGMRRRDV-----ISW---SSMISAFAQRGRVDEAMELYHRMLSE 375



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 72/145 (49%), Gaps = 6/145 (4%)

Query: 16  SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           S+G       +  L+  C+ +  +   +++ + +    ++ +   + N L++FY + G L
Sbjct: 273 SKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLV-VSNALVNFYGRCGAL 331

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTAIAGF 131
             A+ +FD M  RD+ISW++++SA A+ G V +   L+ +M     + D + + + +   
Sbjct: 332 GDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFAC 391

Query: 132 ANKGFSREALQVFSRMQKD-RFEPT 155
           +N G    +   F  +  D + EPT
Sbjct: 392 SNSGVVEASGDFFRSIVGDTQVEPT 416


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/684 (34%), Positives = 379/684 (55%), Gaps = 40/684 (5%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS----GK 74
           Q   E ++  ++L  ++  D   A R+   M  +  +PN+T   N +  F        G+
Sbjct: 169 QTRDETSWNAVILAHSQSGDWSGALRIFKEMKCDV-KPNSTTYINVISGFSTPEVLPEGR 227

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
             +A  + +     D++   AL++ + + GS  + R +FDKM  RD VS+N  I  +   
Sbjct: 228 KIHAEIVANGFDT-DLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   EAL+++ ++  + F+ T  T VS L AC+ +  L +G+ +H  I+   L   V V 
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVA 346

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            AL +MYAK G +++AR +F+ M NR+ V+W+ +I  Y  NG  K               
Sbjct: 347 TALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDA------------- 393

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                                A ++F  +  +D + W  MI  Y QNG    A+ +F EM
Sbjct: 394 -------------------RKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM 434

Query: 315 L-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
             +  ++PD  +  +V+ +CA L  L   + +H +     ++ +++V++ LI+MY +CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            ++A  +F     + VVSW +M+  ++Q G+  EAL L+ ++  E +KPD  T+ S+L  
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYTSILFV 554

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C H    E+G  +F  ++ +H + P+ DH+A M++LLGRS  +  A +L++S+P +P+ +
Sbjct: 555 CTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPFEPDPV 614

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
            W T L+ C + G ++ GE AA  ++EL+P +  PYI +SN+YAA G WE VAS+R  M+
Sbjct: 615 AWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKME 674

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + +KK    S+IE+D K+H+F S  + HP T+ I EEL++L   ++ AG+ P+TK VLH
Sbjct: 675 ERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDTKAVLH 734

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  E EK   + YHSEK+A+A+ L+       PIR++KN+RVC DCH   KF + I GR 
Sbjct: 735 DVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIARIAGRD 794

Query: 674 IILRDSNRFHHFVG-GNCSCKDNW 696
           II+RD NRFH F   G CSC D W
Sbjct: 795 IIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/413 (31%), Positives = 206/413 (49%), Gaps = 60/413 (14%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P + T ++ L +C+   D+  G+ +H +I       +  V NAL  MY K   +  AR 
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 213 LFDRMN--NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
           +F+ M+   RN+VSWN MI+ Y +NG   + + L+  M L GL  D VT  ++LGAC   
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 268 -----------------FQT------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                            FQ+            G + DA R+F  ++ +D   W  +I+ +
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAH 183

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+G    AL +F EM   DV+P+  +  +V+S  +    L  G+ +H + V  G D DL
Sbjct: 184 SQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDL 242

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V++ALI+MY KCG + +A  VF+ M  R++VSWN MI  Y  NG   EAL LY KL  E
Sbjct: 243 VVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDME 302

Query: 419 NLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
             K    TFVS+L AC           +H+ + ERG    DS  AV            ++
Sbjct: 303 GFKRTKATFVSILGACSSVKALAQGRLVHSHILERG---LDSEVAVA---------TALV 350

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           N+  +   +++A  +  ++ ++ +++ WSTL+   A  G  K     AR +F+
Sbjct: 351 NMYAKCGSLEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDAR-KARKVFD 401



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 176/354 (49%), Gaps = 18/354 (5%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           H+  +    L   G   T+  +  ++  C+ V  +   + + SH+ L     +   +   
Sbjct: 290 HEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHI-LERGLDSEVAVATA 348

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA---LFDKMPIRDS 121
           L++ YAK G L  AR +F+ M  RD ++W+ L+ A+A +G  +D R    +FD++  RD+
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDT 408

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +S+N  I  +   G +  A+++F  M      +P   T ++ L ACA L  L   K +H 
Sbjct: 409 ISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHA 468

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +I    L  NV V N L +MYA+ G +++A  LF     + +VSW  M++ + + G+  +
Sbjct: 469 QISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAE 528

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT-----TMI 295
            +DLFQEM L G+ PD+VT ++IL  C   G ++   R F  + E   +  T      M+
Sbjct: 529 ALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMV 588

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
               ++G+  DA  L   M  E   PD  +  + +++C       HG++  G+A
Sbjct: 589 DLLGRSGRLFDAKELLESMPFE---PDPVAWMTFLTACR-----IHGKLELGEA 634



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 125/276 (45%), Gaps = 40/276 (14%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           D +PD  +  +V+ SC+    +  G+ +H +      + D +V +ALI MY KC    DA
Sbjct: 2   DRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDA 61

Query: 378 WTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC- 434
            +VF  M    RNVVSWN+MI  YAQNG   EAL LY ++  + L  D  TFVSVL AC 
Sbjct: 62  RSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121

Query: 435 -------LHADLFERGQNHFDSIS----AVHGITPSLDHYACMINLL------------- 470
                  +H  +F  G + F S++     ++    S+     M   L             
Sbjct: 122 SLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVIL 181

Query: 471 --GRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAM-----KGDIKHGEMAARHLFEL 521
              +S D   A+ + K +    KPNS  +  ++S  +      +G   H E+ A   F+ 
Sbjct: 182 AHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANG-FDT 240

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           + + A   I   NMY  CG   +   +   MK +++
Sbjct: 241 DLVVATALI---NMYGKCGSSHEAREVFDKMKKRDM 273


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 237/687 (34%), Positives = 397/687 (57%), Gaps = 10/687 (1%)

Query: 18   GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
            G  A +    +L+  C+        +++  ++    +E N + + N L+  Y+++GKL  
Sbjct: 621  GAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVS-MCNSLIVMYSRNGKLES 679

Query: 78   ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAIAGFAN 133
            +R +F+ M  R++ SWN+++S++ R G V D   L D+M       D V++N+ ++G+A+
Sbjct: 680  SRKVFNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYAS 739

Query: 134  KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            K  SR+A+ V  R+Q    +P   +  S L A  +   ++ GK IHG ++   L  +V+V
Sbjct: 740  KALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYV 799

Query: 194  RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
               L DMY K G +  AR +FD M+ +N+V+WN +ISG    G  K+   L   M+  G+
Sbjct: 800  ETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGI 859

Query: 254  NPDEVTVSNILGACFQTGRIDDA----GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
              + VT ++++      G+ + A    G++     E + V WT ++ G ++NG   + L 
Sbjct: 860  KSNAVTWNSLVSGYATWGKTEKALAVVGKMKKNGVEPNVVSWTAILSGCSKNGNFGNGLK 919

Query: 310  LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            +F +M  E V P+  +ISS++     L+ LY G+ VH   +   +  D  V++AL+DMY 
Sbjct: 920  IFLKMQEEGVSPNSATISSLLRILGCLSLLYSGKEVHSFCLKNNLTRDAHVATALVDMYA 979

Query: 370  KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
            K G    A  +F  +  + + SWN MI GYA   +  E +A+++ +L+  ++PD+ TF S
Sbjct: 980  KSGDLQSAAEIFWGIKNKPLASWNCMIMGYAMFRRGEEGIAVFNAMLEAGIEPDAITFTS 1039

Query: 430  VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
            VLS C ++ L   G  +FD + + +G+ P+++H +CM+ LLGRS  +D+A D I+++P K
Sbjct: 1040 VLSVCKNSGLVREGWKYFDLMRSHYGVIPTIEHCSCMVELLGRSGYLDEAWDFIRTMPLK 1099

Query: 490  PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
            P++ IW   LS C +  D++  E+A + L  LEP N+  Y+M+ N+Y+   RW DV  IR
Sbjct: 1100 PDATIWGAFLSSCKIHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWGDVERIR 1159

Query: 550  SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
            +SM +  V+    +SWI+ID  VH F +E + HP+   IY EL KL+ +++++G+ P+T+
Sbjct: 1160 NSMSNNRVRVQDLWSWIQIDQTVHIFYAEGKAHPDEGEIYFELYKLVSEMKKSGYMPDTR 1219

Query: 610  LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
             +  +  E EK K +  H+EKLA+ Y LIKK  G+ PIR++KN  +C DCH   K+ S +
Sbjct: 1220 CIHQNVSESEKEKLLMGHTEKLAMTYGLIKK-KGIAPIRVVKNTNLCSDCHTVAKYISVL 1278

Query: 670  IGRTIILRDSNRFHHFVGGNCSCKDNW 696
              R I+L++  R HHF  G CSC ++W
Sbjct: 1279 RNREIVLQEGARVHHFRDGKCSCNNSW 1305



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 220/468 (47%), Gaps = 40/468 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL+  + R  S+     +FD+MP RD +++N  +      G   +A+++F  M+    +
Sbjct: 564 SALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAK 623

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             D T V  L  C+      +G+QIHG ++      NV + N+L  MY++ G+++ +R +
Sbjct: 624 AYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKV 683

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ M +RNL SWN ++S Y + G     + L  EM+  GL PD VT              
Sbjct: 684 FNSMVDRNLSSWNSIVSSYTRLGYVDDAMGLLDEMETCGLKPDIVT-------------- 729

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                            W +++ GY       DA+ +   +    ++P+  SISS++ + 
Sbjct: 730 -----------------WNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAV 772

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
            +   +  G+ +HG  +   +  D+ V + LIDMY K G    A  VF+MM  +N+V+WN
Sbjct: 773 YEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKNIVAWN 832

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           S+I+G +  G   EA AL  ++ +E +K ++ T+ S++S        E+       +   
Sbjct: 833 SLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMKK- 891

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKH 510
           +G+ P++  +  +++   ++ +    + +   +  +   PNS   S+LL +      +  
Sbjct: 892 NGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLYS 951

Query: 511 GEMAARHLFELE---PINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           G+    H F L+     +A     L +MYA  G  +  A I   +K+K
Sbjct: 952 GKEV--HSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNK 997



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 198/492 (40%), Gaps = 85/492 (17%)

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK-KCIDLFQEMQL 250
           F+   L   Y + GE   A  +F     RN VSW   +      G  K K ++ F  +Q 
Sbjct: 458 FISKCLITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFGVEKYKVLEEFVRLQN 517

Query: 251 LGLNPDEVT------------------------------------VSNILGACFQTGRID 274
            G+N DEV                                     VS ++G   +   +D
Sbjct: 518 KGVNFDEVVLAMVFRICAVLMYRFLGFTIHGGLIKRGLDNSDTRVVSALMGFYGRCVSLD 577

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A ++F  + ++D++ W  +++   Q+G  E A+ LF  M     +    ++  ++  C+
Sbjct: 578 LANKIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCS 637

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
                  G+ +HG  + LG + ++ + ++LI MY + G  + +  VFN M  RN+ SWNS
Sbjct: 638 NKEGFAQGRQIHGYVLRLGFESNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNS 697

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +++ Y + G   +A+ L D++    LKPD  T+ S+LS      L          I  + 
Sbjct: 698 IVSSYTRLGYVDDAMGLLDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQ-IA 756

Query: 455 GITPSLDHYACMINL--------LGRS-----------SDVDKAVDLIKS------LPH- 488
           G+ P+    + ++          LG++            DV     LI        LP+ 
Sbjct: 757 GLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYA 816

Query: 489 --------KPNSLIWSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIMLSNMYAAC 539
                   + N + W++L+S  +  G +K  E + +R   E    NA  +  L + YA  
Sbjct: 817 RMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATW 876

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           G+ E   ++   MK   V+     SW  I +   K  +           +    K+  K+
Sbjct: 877 GKTEKALAVVGKMKKNGVEP-NVVSWTAILSGCSKNGN-----------FGNGLKIFLKM 924

Query: 600 QEAGFSPNTKLV 611
           QE G SPN+  +
Sbjct: 925 QEEGVSPNSATI 936


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/640 (37%), Positives = 359/640 (56%), Gaps = 71/640 (11%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +  A+     +   +EA+++  R       P+   + + + AC +   L  G+++H    
Sbjct: 58  FEEAVDVLCQQKRVKEAVELLHRTDH---RPSARVYSTLIAACVRHRALELGRRVHAHTK 114

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI-------------- 229
             N    VF+ N L DMYAK G +  A+ LFD M +R+L SWN MI              
Sbjct: 115 ASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARK 174

Query: 230 -----------------SGYLKNGQPKKCIDLFQEMQL---------------------- 250
                            SGY+ + QP++ ++LF+ MQ                       
Sbjct: 175 LFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIP 234

Query: 251 ---LG-----------LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
              LG           LN DEV  S +L    + G +D+A  +F  +K++D V WTTMI 
Sbjct: 235 CLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIH 294

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              ++G+ E+  +LF +++   VRP++++ + V+++CA  A+ + G+ VHG  +  G D 
Sbjct: 295 RCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDP 354

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
                SAL+ MY KCG T  A  VFN M   ++VSW S+I GYAQNGQ  EAL  ++ LL
Sbjct: 355 GSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLL 414

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           Q   KPD  T+V VLSAC HA L ++G  +F SI   HG+  + DHYAC+I+LL RS   
Sbjct: 415 QSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRF 474

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A ++I ++P KP+  +W++LL  C + G+++  + AA+ L+E+EP N   YI L+N+Y
Sbjct: 475 KEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIY 534

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G W +VA++R  M +  + K    SWIEI  +VH F+  D +HP+T  I+E L +L 
Sbjct: 535 ANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELS 594

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK++E G+ P+T  VLHD +EE+K +++ YHSEKLA+ + +I  P G TPI++ KN+R C
Sbjct: 595 KKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPG-TPIKVFKNLRTC 653

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K+ S I+ R I +RDSNRFH F  G+CSCKD W
Sbjct: 654 VDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 245/478 (51%), Gaps = 40/478 (8%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           ++++A++ L+      +   Y+ L+  C R   +EL +R+ +H   + + P   F+ NRL
Sbjct: 70  RVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGV-FISNRL 128

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L  YAK G L  A+ LFD+M  RD+ SWN ++  +A+ G ++  R LFD+MP RD+ S+N
Sbjct: 129 LDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWN 188

Query: 126 TAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
            AI+G+      REAL++F  MQ+ +R     +T  SAL A A +  LR GK+IHG ++ 
Sbjct: 189 AAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIR 248

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V +AL D+Y K G +D+AR +FD+M +R++VSW  MI    ++G+ ++   L
Sbjct: 249 TELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLL 308

Query: 245 FQEMQLLGLNPDEVTVSNILGACF-----------------------------------Q 269
           F+++   G+ P+E T + +L AC                                    +
Sbjct: 309 FRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSK 368

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G    A R+F+ + + D V WT++IVGY QNG+ ++AL  F  +L    +PD+ +   V
Sbjct: 369 CGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGV 428

Query: 330 VSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR- 387
           +S+C     +  G +  H      G+       + +ID+  + G   +A  + + MP + 
Sbjct: 429 LSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKP 488

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
           +   W S++ G   +G +LE      K L E    +  T++++ +   +A L+    N
Sbjct: 489 DKFLWASLLGGCRIHG-NLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVAN 545


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 361/644 (56%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  + + G V     +F+KMP  D VS+N  I+G    G    A+++  +M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +T  S L AC+       G+QIHG ++  N   + ++   L DMYAK   +
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--- 264
           D AR +FD M +R+L+  N +ISG    G+  + + LF E++  GL  +  T++ +L   
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 265 -------------------GACFQT----GRID---------DAGRLFHVIKEKDNVCWT 292
                              G  F      G ID         DA R+F      D +  T
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI   +Q    E A+ LF EML + + PD F +SS++++CA L++   G+ VH   +  
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
               D    +AL+  Y KCG  +DA   F+ +P R VVSW++MI G AQ+G    AL L+
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++ E + P+  T  SVL AC HA L +  + +F+S+  + GI  + +HY+CMI+LLGR
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +D A++L+ S+P + N+ IW  LL    +  D + G++AA  LF LEP  +G +++L
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           +N YA+ G W +VA +R  MK  N+KK  A SWIE+ +KVH F+  D++HP T+ IY +L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   + +AGF PN  + LHD    EK   + +HSE+LA+A+ L+  P G  PIR+ KN
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG-APIRVKKN 833

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH+  KF S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 834 LRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 238/489 (48%), Gaps = 44/489 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   NAL++ +   G + D R +F++    R++VS+N  ++ +       +A+QVF  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT++     +NAC    ++  G+Q+H  +V      +VF  NAL DMY K G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D A  +F++M + ++VSWN +ISG + NG   + I+L  +M+  GL P+  T+S+IL AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                F  GR                              +DDA ++F  +  +D +   
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I G +  G+ ++AL LF E+  E +  ++ ++++V+ S A L +    + VH  AV +
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  V + LID Y KC    DA  VF    + ++++  SMI   +Q      A+ L+
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L++ L+PD F   S+L+AC     +E+G+     +     ++ +    A ++    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAK 552

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
              ++ A     SLP +   + WS ++   A  G   HG+ A      +  E IN   +I
Sbjct: 553 CGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHG---HGKRALELFGRMVDEGINPN-HI 607

Query: 531 MLSNMYAAC 539
            ++++  AC
Sbjct: 608 TMTSVLCAC 616



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 149/543 (27%), Positives = 245/543 (45%), Gaps = 81/543 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+S +++       R  FD++P    VS+++ +  ++N G  R A+Q F  M+ +   
Sbjct: 41  NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++     L     + D R G Q+H   +    G +VFV NAL  MY   G +D AR +
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           F+  ++ RN VSWN ++S Y+KN Q    I +F EM   G+ P E   S ++ AC     
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + GR+D A  +F  + + D V W  +I G
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              NG +  A+ L  +M    + P+ F++SS++ +C+   +   G+ +HG  +    D D
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             +   L+DMY K    DDA  VF+ M  R+++  N++I+G +  G+  EAL+L+ +L +
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 418 ENLKPDSFTFVSVL--SACLHADLFERGQNH---------FDSISAVHGITPSL------ 460
           E L  +  T  +VL  +A L A    R Q H         FD+   V+G+  S       
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASTTR-QVHALAVKIGFIFDA-HVVNGLIDSYWKCSCL 455

Query: 461 -------------DHYAC--MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVC 502
                        D  AC  MI  L +    + A+ L   +  K   P+  + S+LL+ C
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 503 AMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           A     + G+    HL + + ++   AG  ++ +  YA CG  ED     SS+  + V  
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVS 573

Query: 560 FAA 562
           ++A
Sbjct: 574 WSA 576



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 148/307 (48%), Gaps = 35/307 (11%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G  +H  ++    G     RN L   Y+K      AR  FD + +   VSW+ +++ 
Sbjct: 20  LLPGAHLHASLL--KSGSLASFRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTA 77

Query: 232 YLKNGQPKKCIDLFQEMQLLGLN-------------PD------------------EVTV 260
           Y  NG P+  I  F  M+  G+              PD                  +V V
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFV 137

Query: 261 SNILGACFQT-GRIDDAGRLFH-VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           +N L A +   G +DDA R+F+    E++ V W  ++  Y +N +  DA+ +F EM+   
Sbjct: 138 ANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           ++P +F  S VV++C    ++  G+ VH   V +G D D+  ++AL+DMY K G  D A 
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F  MP  +VVSWN++I+G   NG D  A+ L  ++    L P+ FT  S+L AC  A 
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 439 LFERGQN 445
            F+ G+ 
Sbjct: 318 AFDLGRQ 324


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/644 (37%), Positives = 361/644 (56%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  + + G V     +F+KMP  D VS+N  I+G    G    A+++  +M
Sbjct: 235 KDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +T  S L AC+       G+QIHG ++  N   + ++   L DMYAK   +
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--- 264
           D AR +FD M +R+L+  N +ISG    G+  + + LF E++  GL  +  T++ +L   
Sbjct: 355 DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKST 414

Query: 265 -------------------GACFQT----GRID---------DAGRLFHVIKEKDNVCWT 292
                              G  F      G ID         DA R+F      D +  T
Sbjct: 415 ASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACT 474

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI   +Q    E A+ LF EML + + PD F +SS++++CA L++   G+ VH   +  
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
               D    +AL+  Y KCG  +DA   F+ +P R VVSW++MI G AQ+G    AL L+
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++ E + P+  T  SVL AC HA L +  + +F+S+  + GI  + +HY+CMI+LLGR
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +D A++L+ S+P + N+ IW  LL    +  D + G++AA  LF LEP  +G +++L
Sbjct: 655 AGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           +N YA+ G W +VA +R  MK  N+KK  A SWIE+ +KVH F+  D++HP T+ IY +L
Sbjct: 715 ANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKL 774

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   + +AGF PN  + LHD    EK   + +HSE+LA+A+ L+  P G  PIR+ KN
Sbjct: 775 VELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG-APIRVKKN 833

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH+  KF S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 834 LRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/489 (27%), Positives = 238/489 (48%), Gaps = 44/489 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   NAL++ +   G + D R +F++    R++VS+N  ++ +       +A+QVF  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT++     +NAC    ++  G+Q+H  +V      +VF  NAL DMY K G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D A  +F++M + ++VSWN +ISG + NG   + I+L  +M+  GL P+  T+S+IL AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKAC 313

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                F  GR                              +DDA ++F  +  +D +   
Sbjct: 314 SGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCN 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I G +  G+ ++AL LF E+  E +  ++ ++++V+ S A L +    + VH  AV +
Sbjct: 374 ALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKI 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  V + LID Y KC    DA  VF    + ++++  SMI   +Q      A+ L+
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLF 493

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L++ L+PD F   S+L+AC     +E+G+     +     ++ +    A ++    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAK 552

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
              ++ A     SLP +   + WS ++   A  G   HG+ A      +  E IN   +I
Sbjct: 553 CGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHG---HGKRALELFGRMVDEGINPN-HI 607

Query: 531 MLSNMYAAC 539
            ++++  AC
Sbjct: 608 TMTSVLCAC 616



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 149/543 (27%), Positives = 246/543 (45%), Gaps = 81/543 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+S +++       R +FD++P    VS+++ +  ++N G  R A+Q F  M+ +   
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++     L     + D R G Q+H   +    G +VFV NAL  MY   G +D AR +
Sbjct: 101 CNEFALPVVLKC---VPDARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           F+  ++ RN VSWN ++S Y+KN Q    I +F EM   G+ P E   S ++ AC     
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + GR+D A  +F  + + D V W  +I G
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              NG +  A+ L  +M    + P+ F++SS++ +C+   +   G+ +HG  +    D D
Sbjct: 278 CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSD 337

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             +   L+DMY K    DDA  VF+ M  R+++  N++I+G +  G+  EAL+L+ +L +
Sbjct: 338 DYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRK 397

Query: 418 ENLKPDSFTFVSVL--SACLHADLFERGQNH---------FDSISAVHGITPSL------ 460
           E L  +  T  +VL  +A L A    R Q H         FD+   V+G+  S       
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASTTR-QVHALAVKIGFIFDA-HVVNGLIDSYWKCSCL 455

Query: 461 -------------DHYAC--MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVC 502
                        D  AC  MI  L +    + A+ L   +  K   P+  + S+LL+ C
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 503 AMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           A     + G+    HL + + ++   AG  ++ +  YA CG  ED     SS+  + V  
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVS 573

Query: 560 FAA 562
           ++A
Sbjct: 574 WSA 576



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 149/307 (48%), Gaps = 35/307 (11%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G  +H  ++    G     RN L   Y+K      AR +FD + +   VSW+ +++ 
Sbjct: 20  LLPGAHLHASLL--KSGSLASFRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTA 77

Query: 232 YLKNGQPKKCIDLFQEMQLLGLN-------------PD------------------EVTV 260
           Y  NG P+  I  F  M+  G+              PD                  +V V
Sbjct: 78  YSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFV 137

Query: 261 SNILGACFQT-GRIDDAGRLFH-VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           +N L A +   G +DDA R+F+    E++ V W  ++  Y +N +  DA+ +F EM+   
Sbjct: 138 ANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSG 197

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           ++P +F  S VV++C    ++  G+ VH   V +G D D+  ++AL+DMY K G  D A 
Sbjct: 198 IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIAS 257

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F  MP  +VVSWN++I+G   NG D  A+ L  ++    L P+ FT  S+L AC  A 
Sbjct: 258 VIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAG 317

Query: 439 LFERGQN 445
            F+ G+ 
Sbjct: 318 AFDLGRQ 324


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/608 (37%), Positives = 358/608 (58%), Gaps = 36/608 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++   NAL+  ++ SG V   R +FD+    D V++N  I+G+       E++++F  M+
Sbjct: 153 NVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEME 212

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + R  P+  T VS L+AC++L DL  GK++H  +    +     + NAL DMYA  G++D
Sbjct: 213 RMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMD 272

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +FD M +R+++SW  +++G+   GQ             +GL               
Sbjct: 273 TALGIFDNMKSRDVISWTAIVTGFTNLGQ-------------VGL--------------- 304

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
                  A   F  + E+D V WT MI GY Q  + ++ L LF EM + +++PD+F++ S
Sbjct: 305 -------ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVS 357

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++++CA L +L  G+ +        +  D  V +ALIDMY  CG  + A  +FN MP R+
Sbjct: 358 ILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRD 417

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
            +SW ++I G A NG   EAL ++ ++L+ ++ PD  T + VL AC H+ + ++G+  F 
Sbjct: 418 KISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFA 477

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            ++  HGI P++ HY CM++LLGR+  + +A ++IK++P KPNS++W +LL  C +  D 
Sbjct: 478 RMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDE 537

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  EMAA+ + ELEP N   Y++L N+YAAC RWE +  +R  M  + +KK    S IE+
Sbjct: 538 EMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEM 597

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
           +  VH+FV+ D+ HP+++ IY +L ++   L+ AG+SP+T  V  D  EEEK  ++  HS
Sbjct: 598 NGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHS 657

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           EKLA+A+ LI    GVT IRI+KN+R+C DCH   K  S +  R +I+RD  RFHHF  G
Sbjct: 658 EKLAIAFGLISSGPGVT-IRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHG 716

Query: 689 NCSCKDNW 696
           +CSCKD W
Sbjct: 717 SCSCKDYW 724



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 211/480 (43%), Gaps = 104/480 (21%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKS 72
           +  RG    E  Y  L+   TR   V+  + L  H+  L F   +  F+ N L+H Y+ S
Sbjct: 110 MLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGF--SSNVFVQNALIHLYSLS 167

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G++  AR +FD+    D+++WN ++S + RS         FD                  
Sbjct: 168 GEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ-------FD------------------ 202

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                 E++++F  M++ R  P+  T VS L+AC++L DL  GK++H  +    +     
Sbjct: 203 ------ESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRV 256

Query: 193 VRNALTDMYAKGGEIDK-------------------------------ARWLFDRMNNRN 221
           + NAL DMYA  G++D                                AR  FD+M  R+
Sbjct: 257 LENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERD 316

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------- 267
            VSW  MI GYL+  + K+ + LF+EMQ   + PDE T+ +IL AC              
Sbjct: 317 FVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKA 376

Query: 268 ---------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                F  G ++ A R+F+ +  +D + WT +I G   NG  E+
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-GVDDDLLVSSALI 365
           AL +F++ML   + PD+ +   V+ +C     +  G+    +     G++ ++     ++
Sbjct: 437 ALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMV 496

Query: 366 DMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           D+  + G   +A  V   MP + N + W S++ G  +  +D E   +  + + E L+P++
Sbjct: 497 DLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLL-GACRVHRDEEMAEMAAQQILE-LEPEN 554



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 153/311 (49%), Gaps = 11/311 (3%)

Query: 252 GLNPDEVTVSNILGAC--FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GL  + +  + I+  C   + G ++ A  +F  +   ++  W  MI GY++ G    A+ 
Sbjct: 46  GLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVS 105

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           ++ EML   V PD+++   ++    +  ++  G+ +H   V LG   ++ V +ALI +Y 
Sbjct: 106 MYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYS 165

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
             G    A  VF+     +VV+WN MI+GY ++ Q  E++ L+D++ +  + P S T VS
Sbjct: 166 LSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVS 225

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC        G+     +  +  I P       +I++     D+D A+ +  ++  +
Sbjct: 226 VLSACSKLKDLNVGKRVHRYVKDLK-IEPVRVLENALIDMYAACGDMDTALGIFDNMKSR 284

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMA-ARHLFELEP-INAGPYIMLSNMYAACGRWEDVAS 547
            + + W+ +++     G    G++  AR+ F+  P  +   +  + + Y    R+++V S
Sbjct: 285 -DVISWTAIVT-----GFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLS 338

Query: 548 IRSSMKSKNVK 558
           +   M++ N+K
Sbjct: 339 LFREMQAANIK 349


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/643 (37%), Positives = 352/643 (54%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +A+++ + +   V   R +FD M  RD+V +NT ++G        EA+ +F  M 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K        T  + L   A+L DL  G  I    +      + +V   L  +Y+K GEI+
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIE 259

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR LF ++   +LVS+N MISGY  N + +  + LF+E+ + G   +  ++  ++   F
Sbjct: 260 TARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFF 319

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                    I+ A  LF    EK    W  
Sbjct: 320 PFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNA 379

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI GY QNG  E A+ LF EM   +VRP+  +++S++S+CA+L +L  G+ VH       
Sbjct: 380 MISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + ++ VS+ALIDMY KCG   +A  +F+MMP +N V+WN+MI+GY  +G   EAL L++
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L   + P   TF+SVL AC HA L   G   F S+   HG  P  +HYACM++LLGR+
Sbjct: 500 EMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            ++DKA+D I+ +P +P   +W  LL  C +  D     +A+  LFEL+P N G Y++LS
Sbjct: 560 GNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLS 619

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+Y+A   + + AS+R  +K + + K    + IE+ N +H F S D++HP+   IY  L 
Sbjct: 620 NIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLE 679

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           KL  K++EAGF   T   LHD +EEEK   +  HSEKLA+A+ LI    G T IRI+KN+
Sbjct: 680 KLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPG-TEIRIIKNL 738

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   KF S I  R I++RD+NRFHHF  G CSC D W
Sbjct: 739 RVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 203/454 (44%), Gaps = 41/454 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+++   L    +   ++     LF  +P  D   YN  I  F+       A+ +++ ++
Sbjct: 41  DLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLR 100

Query: 149 KDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           K    EP ++T+   ++  + L             +V   G ++FV +A+   Y K   +
Sbjct: 101 KSTPLEPDNFTYAFVISGASSLGLGLLLHAHS---IVAGFGSDLFVGSAIVACYFKFSRV 157

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-- 265
             AR +FD M  R+ V WN M+SG +KN    + I +F +M   G+  D  TV+ +L   
Sbjct: 158 AAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGV 217

Query: 266 -------------------------------ACF--QTGRIDDAGRLFHVIKEKDNVCWT 292
                                          AC   + G I+ A  LF  I + D V + 
Sbjct: 218 AELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYN 277

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI GYT N + E ++ LF E+L    + +  SI  ++        L+  + +HG     
Sbjct: 278 AMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKS 337

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           GV  +  VS+AL  +Y +    + A  +F+    +++ SWN+MI+GYAQNG   +A++L+
Sbjct: 338 GVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLF 397

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++ +  ++P+  T  S+LSAC        G+   D I+       ++     +I++  +
Sbjct: 398 QEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR-ESFESNIFVSTALIDMYAK 456

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              + +A  L   +P K N++ W+ ++S   + G
Sbjct: 457 CGSITEAQRLFSMMPEK-NAVTWNAMISGYGLHG 489



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 193/467 (41%), Gaps = 84/467 (17%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L +  Q H +I++  L  ++     LT   +    ID+A  LF  + N +L  +N++I  
Sbjct: 23  LHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLFLYNVLIRA 82

Query: 232 YLKNGQPKKCIDLFQEMQ---------------------------------LLGLNPDEV 258
           +  N  P   + L+  ++                                 + G   D  
Sbjct: 83  FSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHSIVAGFGSDLF 142

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
             S I+   F+  R+  A ++F  + E+D V W TM+ G  +N   ++A+++F +M+   
Sbjct: 143 VGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGG 202

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  D  ++++V+   A+L  L  G  +   A+ +G      V + L  +Y KCG  + A 
Sbjct: 203 IGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETAR 262

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV-------- 430
            +F  +   ++VS+N+MI+GY  N +   ++ L+ +LL    K +S + V +        
Sbjct: 263 LLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFG 322

Query: 431 ---LSACLHA------------------------DLFERGQNHFDSISAVHGITPSLDHY 463
              L+ C+H                         +  E  +  FD  S       SL  +
Sbjct: 323 HLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSE-----KSLASW 377

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
             MI+   ++   +KA+ L + +     +PN +  +++LS CA  G +  G+     L  
Sbjct: 378 NAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKW-VHDLIN 436

Query: 521 LEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            E   +  ++   L +MYA CG   +   + S M  KN     A +W
Sbjct: 437 RESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKN-----AVTW 478



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 105/212 (49%), Gaps = 31/212 (14%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y++  ++  AR LFD+   + + SWNA++S +A++                         
Sbjct: 353 YSRLNEIESARLLFDESSEKSLASWNAMISGYAQN------------------------- 387

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
                 G + +A+ +F  MQK    P   T  S L+ACAQL  L  GK +H  I   +  
Sbjct: 388 ------GLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE 441

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+FV  AL DMYAK G I +A+ LF  M  +N V+WN MISGY  +G   + ++LF EM
Sbjct: 442 SNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEM 501

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
               ++P  VT  ++L AC   G + +   +F
Sbjct: 502 LHSRVSPTGVTFLSVLYACSHAGLVREGDEIF 533



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 35/193 (18%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T ++  C ++  + L K +   ++   +E N  F+   L+  YAK G +  A+ LF  MP
Sbjct: 413 TSILSACAQLGALSLGKWVHDLINRESFESNI-FVSTALIDMYAKCGSITEAQRLFSMMP 471

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++ ++WNA++S                               G+   G+  EAL +F+ 
Sbjct: 472 EKNAVTWNAMIS-------------------------------GYGLHGYGHEALNLFNE 500

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKG 204
           M   R  PT  T +S L AC+    +R G +I  + +V + G      +   + D+  + 
Sbjct: 501 MLHSRVSPTGVTFLSVLYACSHAGLVREGDEIF-RSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 205 GEIDKARWLFDRM 217
           G +DKA     +M
Sbjct: 560 GNLDKALDFIRKM 572


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/769 (32%), Positives = 417/769 (54%), Gaps = 88/769 (11%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   ++  G    E  ++ ++  C+ V D+ + K++   + ++ +E +  F+ N L+  Y
Sbjct: 144 AFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDV-FVANTLVVMY 202

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM------------- 116
           AK  +   ++ LFD++P R+++SWNAL S + +     +   LF +M             
Sbjct: 203 AKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLS 262

Query: 117 -------PIRDS-------------------VSYNTAIAGFANKGFSREALQVFSRMQKD 150
                   +RDS                    S N  +  +A  G   +A+ VF +++  
Sbjct: 263 SMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIK-- 320

Query: 151 RFEPTDYTHVSALNACA------QLLDL--RRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
             +P   +  + +  C       Q L+L  +  +Q+H  ++  ++  ++FV   L DMY+
Sbjct: 321 --QPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYS 378

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K   ++ AR  F+ +  ++L++WN +ISGY +  +  + + LF EM   G+  ++ T+S 
Sbjct: 379 KCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLST 438

Query: 263 IL----------------GACFQTG-------------------RIDDAGRLFHVIKEKD 287
           IL                G   ++G                    ++DA R+F      D
Sbjct: 439 ILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGD 498

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            V +T+MI  Y Q G+ E+AL LF EM   +++PD+F  SS++++CA L++   G+ +H 
Sbjct: 499 LVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHV 558

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
             +  G   D+   ++L++MY KCG  DDA   F+ +  R +VSW++MI G AQ+G   +
Sbjct: 559 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQ 618

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           AL L++++L+E + P+  T VSVL AC HA L    + +F+S+  + G  P  +HYACMI
Sbjct: 619 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 678

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  +++AV+L+  +P + N+ +W  LL    +  D++ G  AA  LF LEP  +G
Sbjct: 679 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 738

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            +++L+N+YA+ G+WE+VA +R  M+   VKK    SWIE+ +KV+ F+  DR+H  ++ 
Sbjct: 739 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQE 798

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IY +L +L   + +AG+ P  ++ LHD ++ EK   + +HSEKLA+A+ LI  P G  PI
Sbjct: 799 IYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQG-API 857

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+ KN+RVC DCH   K+   I+ R II+RD NRFHHF  G+CSC D W
Sbjct: 858 RVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/609 (26%), Positives = 284/609 (46%), Gaps = 101/609 (16%)

Query: 10  AIDTLYSRGQ-AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           AI  L  +G    T  +Y++L+  C     +    ++ +H+  +    + + + N L++ 
Sbjct: 42  AILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS-IRNHLINL 100

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K     YAR L D+    D++SW+AL                               I
Sbjct: 101 YSKCRXFGYARKLVDESSEPDLVSWSAL-------------------------------I 129

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G+A  G    AL  F  M     +  ++T  S L AC+ + DLR GKQ+HG +VV    
Sbjct: 130 SGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFE 189

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           G+VFV N L  MYAK  E   ++ LFD +  RN+VSWN + S Y++     + + LF EM
Sbjct: 190 GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEM 249

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDA-GRLFHVIKEKDNVCW-----TTMIVGYTQNG 302
            L G+ P+E ++S+++ AC  TG  D + G++ H    K    W       ++  Y + G
Sbjct: 250 VLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVG 307

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCA-----KLASLYHGQV---VHGKAVVLGV 354
              DA+ +F ++     +PD  S ++V++ C      + A    GQ+   +H   + + +
Sbjct: 308 DLADAISVFEKI----KQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDM 363

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           + DL VS  L+DMY KC + +DA   FN++P +++++WN++I+GY+Q  +D+EAL+L+ +
Sbjct: 364 ESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVE 423

Query: 415 LLQENLKPDSFTFVSVLSAC--------------------LHADLF-------------- 440
           + +E +  +  T  ++L +                      H+D++              
Sbjct: 424 MHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSH 483

Query: 441 -ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWS 496
            E  +  F+  +        L  +  MI    +    ++A+ L   ++ +  KP+  + S
Sbjct: 484 VEDAERIFEECT-----IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCS 538

Query: 497 TLLSVCAMKGDIKHGEMAARHLFE---LEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +LL+ CA     + G+    H+ +   +  I AG    L NMYA CG  +D     S + 
Sbjct: 539 SLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGN--SLVNMYAKCGSIDDAGRAFSELT 596

Query: 554 SKNVKKFAA 562
            + +  ++A
Sbjct: 597 ERGIVSWSA 605



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 118/276 (42%), Gaps = 15/276 (5%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I    Q  ++     + N +   +  P   S S ++S C    SL  G  +H      G
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           + DD  + + LI++Y KC     A  + +     ++VSW+++I+GYAQNG    AL  + 
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 414 KLLQENLKPDSFTFVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           ++    +K + FTF SVL AC +  DL    Q H   +  V G    +     ++ +  +
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVH--GVVVVSGFEGDVFVANTLVVMYAK 204

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
             +   +  L   +P + N + W+ L S C ++ D     +   +   L  I    +  L
Sbjct: 205 CDEFLDSKRLFDEIPER-NVVSWNALFS-CYVQXDFCGEAVGLFYEMVLSGIKPNEF-SL 261

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKF---AAYSW 565
           S+M  AC        +R S + K +  +     Y W
Sbjct: 262 SSMVNAC------TGLRDSSRGKIIHGYLIKLGYDW 291


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/642 (36%), Positives = 365/642 (56%), Gaps = 43/642 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL +     + Q    +F + P  +   YNT I G  +    R+A+ V++ M++  F 
Sbjct: 39  NLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFA 98

Query: 154 PTDYTHVSALNACAQLLD-LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P ++T    L AC +L      G  +H  ++      +VFV+  L  +Y+K G +  AR 
Sbjct: 99  PDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARK 158

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG- 271
           +FD +  +N+VSW  +I GY+++G   + + LF+ +  +GL PD  T+  IL AC + G 
Sbjct: 159 VFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGD 218

Query: 272 ----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                              +++A R+F  + EKD VCW+ +I G
Sbjct: 219 LASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQG 278

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y  NG  ++AL +F EM  E+VRPD +++  V S+C++L +L  G    G   ++  D+ 
Sbjct: 279 YASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARG---LMDGDEF 335

Query: 358 L---LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           L   ++ +ALID Y KCG    A  VF  M  ++ V +N++I+G A  G    A  ++ +
Sbjct: 336 LSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQ 395

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +++  ++PD  TFV +L  C HA L + G  +F  +S+V  +TP+++HY CM++L  R+ 
Sbjct: 396 MVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAG 455

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            + +A DLI+S+P + NS++W  LL  C +  D +  E   + L ELEP N+G Y++LSN
Sbjct: 456 LLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSN 515

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +Y+A  RW++   IRSS+  K ++K    SW+E+D  VH+F+  D +HP +  IYE+L  
Sbjct: 516 IYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLES 575

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L K L+EAG++P T+ VL D +EEEK   +  HSEKLA+A+ LI        IR++KN+R
Sbjct: 576 LFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAVAFALISTG-AKDVIRVVKNLR 634

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VCGDCH  +K  S + GR II+RD+NRFHHF  G+CSC+D W
Sbjct: 635 VCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRDYW 676



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 37/347 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+     L+  ++++G + D R +FD++P ++ VS+   I G+   G   EAL +F  + 
Sbjct: 136 DVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLL 195

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P  +T V  L AC+++ DL  G+ I G +      GNVFV  +L DMYAK G ++
Sbjct: 196 EMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSME 255

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +AR +FD M  +++V W+ +I GY  NG PK+ +D+F EMQ   + PD   +  +  AC 
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACS 315

Query: 269 QTGRID-----------------------------------DAGRLFHVIKEKDNVCWTT 293
           + G ++                                    A  +F  ++ KD V +  
Sbjct: 316 RLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNA 375

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
           +I G    G    A  +F +M+   ++PD  +   ++  C     +  G +   G + V 
Sbjct: 376 VISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVF 435

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            V   +     ++D+  + G+  +A  +   MP   N + W +++ G
Sbjct: 436 SVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGG 482



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 177/377 (46%), Gaps = 40/377 (10%)

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  L + KQ H  ++   L  + ++ N L            A  +F +  + N+  +N +
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------------- 268
           I G + N   +  + ++  M+  G  PD  T   +L AC                     
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 269 ----------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           + G + DA ++F  I EK+ V WT +I GY ++G   +AL LF 
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFR 192

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            +L   +RPD F++  ++ +C+++  L  G+ + G     G   ++ V+++L+DMY KCG
Sbjct: 193 GLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCG 252

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             ++A  VF+ M  ++VV W+++I GYA NG   EAL ++ ++ +EN++PD +  V V S
Sbjct: 253 SMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFS 312

Query: 433 ACLHADLFERGQNHFDSISAVHGIT-PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           AC      E G      +     ++ P L     +I+   +   V +A ++ K +  K +
Sbjct: 313 ACSRLGALELGNWARGLMDGDEFLSNPVLG--TALIDFYAKCGSVAQAKEVFKGMRRK-D 369

Query: 492 SLIWSTLLSVCAMKGDI 508
            ++++ ++S  AM G +
Sbjct: 370 CVVFNAVISGLAMCGHV 386



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 143/308 (46%), Gaps = 12/308 (3%)

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
           Q K+C  L      LGL+ D   ++ +L +         A  +F      +   + T+I 
Sbjct: 18  QAKQCHCLLLR---LGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVLGVD 355
           G   N    DA+ ++  M      PD F+   V+ +C +L   +H G  +H   +  G D
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V + L+ +Y K G   DA  VF+ +P +NVVSW ++I GY ++G   EAL L+  L
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGL 194

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           L+  L+PDSFT V +L AC        G+   D      G   ++     ++++  +   
Sbjct: 195 LEMGLRPDSFTLVRILYACSRVGDLASGR-WIDGYMRESGSVGNVFVATSLVDMYAKCGS 253

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLS 533
           +++A  +   +  K + + WS L+   A  G  K    A    FE++  N  P  Y M+ 
Sbjct: 254 MEEARRVFDGMVEK-DVVCWSALIQGYASNGMPKE---ALDVFFEMQRENVRPDCYAMV- 308

Query: 534 NMYAACGR 541
            +++AC R
Sbjct: 309 GVFSACSR 316



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 104/267 (38%), Gaps = 45/267 (16%)

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L SL+  +  H   + LG+  D  + + L+        T  A  VF   P  N+  +N++
Sbjct: 13  LKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTL 72

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------------LHADLFERG 443
           I G   N    +A+++Y  + Q    PD+FTF  VL AC            LH+ + + G
Sbjct: 73  IRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTG 132

Query: 444 ------------------------QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
                                   +  FD I   + ++     +  +I     S    +A
Sbjct: 133 FDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVS-----WTAIICGYIESGCFGEA 187

Query: 480 VDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNM 535
           + L + L     +P+S     +L  C+  GD+  G     ++ E   + N      L +M
Sbjct: 188 LGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDM 247

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAA 562
           YA CG  E+   +   M  K+V  ++A
Sbjct: 248 YAKCGSMEEARRVFDGMVEKDVVCWSA 274


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/708 (34%), Positives = 384/708 (54%), Gaps = 53/708 (7%)

Query: 24   EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
            E + ++ LDC + + V +A  L +   +         L  +  H YA    +        
Sbjct: 358  ELFKKMCLDCLKPDCVTVASLLSACSSVG------ALLVGKQFHSYAIKAGM-------- 403

Query: 84   KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
                 DII   ALL  + +   ++     F      + V +N  +  +       E+ ++
Sbjct: 404  ---SSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKI 460

Query: 144  FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
            F++MQ +  EP  +T+ S L  C+ L  +  G+QIH +++      NV+V + L DMYAK
Sbjct: 461  FTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAK 520

Query: 204  GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
             G++D A  +F R+  +++VSW  MI+GY ++ +  + ++LF+EMQ  G++ D +  ++ 
Sbjct: 521  LGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASA 580

Query: 264  LGACF-----------------------------------QTGRIDDAGRLFHVIKEKDN 288
            + AC                                    + G++ DA   F  I  KDN
Sbjct: 581  ISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDN 640

Query: 289  VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
            + W ++I G+ Q+G  E+AL LF++M       + F+    VS+ A +A++  G+ +H  
Sbjct: 641  ISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAM 700

Query: 349  AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
             +  G D +  VS+ LI +Y KCG  DDA   F  MP +N +SWN+M+ GY+Q+G   +A
Sbjct: 701  IIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKA 760

Query: 409  LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
            L+L++ + Q  + P+  TFV VLSAC H  L + G  +F S+  VHG+ P  +HYAC+++
Sbjct: 761  LSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVD 820

Query: 469  LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
            LLGRS  + +A   ++ +P +P++++  TLLS C +  +I  GE AA HL ELEP ++  
Sbjct: 821  LLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSAT 880

Query: 529  YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
            Y++LSNMYA  G+W      R  MK + VKK    SWIE++N VH F + D+ HP  + I
Sbjct: 881  YVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKI 940

Query: 589  YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
            YE L  L +   E G+ P T  +L+D +  +K  +   HSEKLA+A+ L+      TPI 
Sbjct: 941  YEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSS-TPIH 999

Query: 649  IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + KN+RVCGDCH ++K+ S I  R I++RDS RFHHF GG CSCKD W
Sbjct: 1000 VFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 211/448 (47%), Gaps = 38/448 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++    L+  +   G +     +FD+MP+R    +N  +  F     +   L +F RM 
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRML 161

Query: 149 KDRFEPTDYTHVSALNACAQL-LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +++ +P + T+   L  C    +     ++IH + +      ++FV N L D+Y K G +
Sbjct: 162 QEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFL 221

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A+ +FD +  R+ VSW  M+SG  ++G  ++ + LF +M   G+ P     S++L AC
Sbjct: 222 NSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSAC 281

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
            +                                    G    A ++F+ + ++D V + 
Sbjct: 282 TKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYN 341

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           ++I G +Q G  + AL LF +M  + ++PD  +++S++S+C+ + +L  G+  H  A+  
Sbjct: 342 SLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKA 401

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+  D+++  AL+D+Y KC     A   F    T NVV WN M+  Y       E+  ++
Sbjct: 402 GMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIF 461

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++  E ++P+ FT+ S+L  C      + G+     +    G   ++   + +I++  +
Sbjct: 462 TQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAK 520

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
              +D A+ + + L  K + + W+ +++
Sbjct: 521 LGKLDHALKIFRRLKEK-DVVSWTAMIA 547



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 195/415 (46%), Gaps = 39/415 (9%)

Query: 122 VSYNTAIA-GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           + +NTA++  ++N       +     M++        T++  L+ C        G ++HG
Sbjct: 33  LEHNTALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHG 92

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           KI+       V +   L D+Y   G++D A  +FD M  R L  WN ++  ++      +
Sbjct: 93  KILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGR 152

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------------- 267
            + LF+ M    + PDE T + +L  C                                 
Sbjct: 153 VLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLI 212

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
              F+ G ++ A ++F  ++++D+V W  M+ G +Q+G EE+A++LF +M +  V P  +
Sbjct: 213 DLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPY 272

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
             SSV+S+C K+     G+ +HG  +  G   +  V +AL+ +Y + G    A  VFN M
Sbjct: 273 IFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAM 332

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R+ VS+NS+I+G +Q G   +AL L+ K+  + LKPD  T  S+LSAC        G+
Sbjct: 333 LQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGK 392

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             F S +   G++  +     +++L  + SD+  A +   S     N ++W+ +L
Sbjct: 393 -QFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS-TETENVVLWNVML 445


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/676 (36%), Positives = 375/676 (55%), Gaps = 71/676 (10%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L N L+  Y K G+L  A D+FD+M  R+++SW AL+  H ++G+           P+  
Sbjct: 9   LSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGN-----------PL-- 55

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                             E+L +FS+M     +P D+T  + L AC  L  L  G+QIH 
Sbjct: 56  ------------------ESLLLFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHD 97

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             V         V N++ DMY+K G I++A  +F+ M  RNL+SWN MI+GY   G  +K
Sbjct: 98  ICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEK 157

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD------------------------- 275
            + LFQ+MQ +G   DE T ++ L AC   G I +                         
Sbjct: 158 ALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGAL 217

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A R+F  I+EK  + WT +I+GY Q G   +++ LF ++    ++ D 
Sbjct: 218 IDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDG 277

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F +SS++   A  A +  G+ +H  A+ +    D+ V ++++DMY KCG+ ++A  +F+ 
Sbjct: 278 FILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSE 337

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           MP RNV+SW  MI GY ++G   EA+ L+D++  ++ +PD  T+++VL  C H+ L E+G
Sbjct: 338 MPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKG 397

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           Q +F  + + HGI   ++HYACM++LLGR+  + +A +L+ S+P + N  IW TLLS C 
Sbjct: 398 QEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACR 457

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + GD++ G+     L  L+  N   Y+M+SN+YA  G W++   IR  +KSK +KK A  
Sbjct: 458 VHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGR 517

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVK 622
           SW+EID +VH F   D THP TE I+E L ++ +++ +E G+    K  LHD +EE K+ 
Sbjct: 518 SWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMD 577

Query: 623 SICYHSEKLALAYCLI--KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
           ++  HSEKLA+   L+      G   IR+ KN+RVCGDCH F+K  S I+    ++RD+N
Sbjct: 578 NLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDAN 637

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G CSC+D W
Sbjct: 638 RFHRFEDGLCSCRDYW 653



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 180/364 (49%), Gaps = 46/364 (12%)

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G ++ + N L  MY K G +  A  +FDRM  RN+VSW  ++ G+++NG P + + LF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
            +M L G+ P++ T S  L AC                                    + 
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKC 121

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           GRI++A  +F V+  ++ + W  MI GYT  G  E AL+LF +M       D+F+ +S +
Sbjct: 122 GRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTL 181

Query: 331 SSCAKLASLYHGQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
            +C+ L ++  G  +H   +  G     +  V+ ALID+Y KCG    A  VF+ +  ++
Sbjct: 182 KACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKH 241

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHF 447
           V+SW ++I GYAQ G   E++ L+ +L + +++ D F   S++       L ++G Q H 
Sbjct: 242 VISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHA 301

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
            +I    G+  S+ +   ++++  +   +++A  L   +P + N + W+ +++     G 
Sbjct: 302 FAIKVPSGVDISVCN--SILDMYLKCGMINEAERLFSEMPAR-NVISWTVMIT-----GY 353

Query: 508 IKHG 511
            KHG
Sbjct: 354 GKHG 357



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 156/313 (49%), Gaps = 12/313 (3%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           +G   D +  ++++    + GR+  A  +F  + +++ V WT ++ G+ QNG   ++L+L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F++M    V+P+ F+ S+ + +C  L  L  G+ +H   V  G D   +V +++IDMY K
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  ++A  +F +MP RN++SWN+MI GY   G   +AL L+ K+ +     D FTF S 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDH--YACMINLLGRSSDVDKAVDLIKSLPH 488
           L AC      + G N   +     G   S++      +I+L  +   +  A  +   +  
Sbjct: 181 LKACSDLGAIKEG-NQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           K + + W+ L+   A +G++       R L E   I    +I+ S M    G + D A +
Sbjct: 240 K-HVISWTALILGYAQEGNLAESMELFRQLRE-SSIQVDGFILSSMM----GVFADFALV 293

Query: 549 RSSMKSKNVKKFA 561
           +   + K +  FA
Sbjct: 294 Q---QGKQMHAFA 303



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 124/265 (46%), Gaps = 34/265 (12%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLN--FYEPNTTFLHNRLLHFYAKSGKL 75
           G    E  +T  +  C+ +  ++   ++ + +      Y  NT  +   L+  Y K GKL
Sbjct: 169 GGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTA-VAGALIDLYVKCGKL 227

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           F AR +F  +  + +ISW AL                               I G+A +G
Sbjct: 228 FMARRVFSHIEEKHVISWTAL-------------------------------ILGYAQEG 256

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              E++++F ++++   +   +   S +   A    +++GKQ+H   +    G ++ V N
Sbjct: 257 NLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCN 316

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           ++ DMY K G I++A  LF  M  RN++SW +MI+GY K+G  K+ I LF EMQL    P
Sbjct: 317 SILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEP 376

Query: 256 DEVTVSNILGACFQTGRIDDAGRLF 280
           D+VT   +L  C  +G ++     F
Sbjct: 377 DDVTYLAVLLGCSHSGLVEKGQEYF 401


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 371/643 (57%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A+ G ++D   +F  M  RD VS+NT ++G       R+AL  F  MQ
Sbjct: 282 DVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQ 341

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   + ++ + A  +  +L  GK++H   +   L  N+ + N L DMYAK   + 
Sbjct: 342 NSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVK 401

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
              + F+ M+ ++L+SW  +I+GY +N    + I+LF+++Q+ G++ D + + ++L AC 
Sbjct: 402 HMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G  D A R F  I+ KD V WT+M
Sbjct: 462 GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSM 521

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I     NG   +AL LF  +   +++PD  +I S +S+ A L+SL  G+ +HG  +  G 
Sbjct: 522 ITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGF 581

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +  ++S+L+DMY  CG  +++  +F+ +  R+++ W SMIN    +G   EA+AL+ K
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKK 641

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  EN+ PD  TF+++L AC H+ L   G+  F+ +   + + P  +HYACM++LL RS+
Sbjct: 642 MTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSN 701

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   ++S+P KP+S +W  LL  C +  + + GE+AA+ L + +  N+G Y ++SN
Sbjct: 702 SLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISN 761

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           ++AA GRW DV  +R  MK   +KK    SWIE+DNK+H F++ D++HP+T+ IY +L++
Sbjct: 762 IFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQ 821

Query: 595 LIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             K L ++ G+   TK V H+  EEEK + +  HSE+LAL Y L+  P G T IRI KN+
Sbjct: 822 FTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYGLLVTPKG-TSIRITKNL 880

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F K AS++  R +++RD+NRFHHF  G CSC D W
Sbjct: 881 RICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 164/590 (27%), Positives = 263/590 (44%), Gaps = 117/590 (19%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA 101
           A+ L+SH+        + FL  +LLH Y K G L  A  +FD+M  R I +WNA++ A  
Sbjct: 70  ARLLKSHL--------SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGA-- 119

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
                                        F + G   EA++++  M+         T  S
Sbjct: 120 -----------------------------FVSSGKYLEAIELYKEMRVLGVAIDACTFPS 150

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNN 219
            L AC  L + R G +IHG  V    G  VFV NAL  MY K G++  AR LFD   M  
Sbjct: 151 VLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEK 210

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD----------------------- 256
            + VSWN +IS ++  G+  + + LF+ MQ +G+  +                       
Sbjct: 211 EDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGI 270

Query: 257 -----------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                      +V V+N L A + + GR++DA R+F  +  +D V W T++ G  QN   
Sbjct: 271 HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            DAL  F +M +   +PD+ S+ +++++  +  +L +G+ VH  A+  G+D ++ + + L
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTL 390

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KC         F  M  ++++SW ++I GYAQN   LEA+ L+ K+  + +  D 
Sbjct: 391 IDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDP 450

Query: 425 FTFVSVLSAC-----------LHADLFERGQNHF---DSISAVHGITPSLDH-------- 462
               SVL AC           +H  +F+R        ++I  V+G     D+        
Sbjct: 451 MMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESI 510

Query: 463 -------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCA-----MKGD 507
                  +  MI     +    +A++L  SL     +P+S+   + LS  A      KG 
Sbjct: 511 RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGK 570

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
             HG +  +  F   PI +     L +MYA CG  E+   +  S+K +++
Sbjct: 571 EIHGFLIRKGFFLEGPIASS----LVDMYACCGTVENSRKMFHSVKQRDL 616



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 171/360 (47%), Gaps = 42/360 (11%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++   +P++ S+S NT   G  N  F  ++L + S          ++ H   L+ C  + 
Sbjct: 4   SIVTPLPLK-SISVNTLNKGTLNPAF--QSLTLLSTHPLATPSRLEHAHSLLLDLCVAVK 60

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L +G+Q+H +++  +L  + F+   L  MY K G +  A  +FD M  R + +WN M+ 
Sbjct: 61  ALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMG 118

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------- 267
            ++ +G+  + I+L++EM++LG+  D  T  ++L AC                       
Sbjct: 119 AFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGE 178

Query: 268 ------------FQTGRIDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                        + G +  A  LF   +++++D V W ++I  +   GK  +AL LF  
Sbjct: 179 FVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRR 238

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M    V  + ++  + +      + +  G  +HG A+      D+ V++ALI MY KCG 
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGR 298

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            +DA  VF  M  R+ VSWN++++G  QN    +AL  +  +     KPD  + +++++A
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAA 358



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 106/201 (52%)

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           K  L DI+  NA+++ +   G     R  F+ +  +D VS+ + I    + G   EAL++
Sbjct: 478 KRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  +++   +P     +SAL+A A L  L++GK+IHG ++         + ++L DMYA 
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G ++ +R +F  +  R+L+ W  MI+    +G   + I LF++M    + PD +T   +
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLAL 657

Query: 264 LGACFQTGRIDDAGRLFHVIK 284
           L AC  +G + +  R F ++K
Sbjct: 658 LYACSHSGLMVEGKRFFEIMK 678



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 62/268 (23%)

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C  + +L  GQ +H +  +L       +++ L+ MY KCG   DA  VF+ M  R + +W
Sbjct: 56  CVAVKALPQGQQLHAR--LLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTW 113

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N+M+  +  +G+ LEA+ LY ++    +  D+ TF SVL AC        G++     + 
Sbjct: 114 NAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKAC-----GALGESRLG--AE 166

Query: 453 VHGITPSLDH----YAC--MINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLS----- 500
           +HG+          + C  +I + G+  D+  A  L    +  K +++ W++++S     
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 501 -------------------------VCAMKG-----------DIKHGEMAARHLFELEPI 524
                                    V A++G            I    + + H  ++   
Sbjct: 227 GKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVA 286

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSM 552
           NA     L  MYA CGR ED   + +SM
Sbjct: 287 NA-----LIAMYAKCGRMEDAERVFASM 309


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/639 (36%), Positives = 366/639 (57%), Gaps = 40/639 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF-ANKGFSREALQVFSRMQKDRFEP 154
           +LSA+++ G++  +R  FD+MP+ D VS+N  IA +  N+ F R  L  F  M      P
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWL-FFRGMLLQGINP 59

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            +      L+AC    ++  G+ I   I+   +     V+ AL  MY K G    A  +F
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------ 268
            RM++R++V+W+ M++ Y +NG P++ + LF++M L G+ P++VT+ + L AC       
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 269 -----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + GRI+ A   F  I EK+ V W+ +   Y 
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDD 357
           +N +  DA+ + + M  E + P+  +  SV+ +CA +A+L  G+ +H +  VLG  ++ D
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V +AL++MY KCG    A  +F+ +   ++V WNS+I   AQ+GQ  +AL L++++  
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           E L+P   TF SVL AC HA + ++G+ HF S    HGI P  +H+ CM++LLGR+  + 
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            + DL+  +P +P+ + W   L  C    ++     AA +LF+L+P    PY++LSNMYA
Sbjct: 420 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYA 479

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             GRW DVA +R +M+     K A  SWIE+ ++VH+F+S D  HP    I+ EL +L K
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            ++EAG+ P+T++VLHD ++E K   + YHSEKLA+A+ L+  P G +PIR++KN+RVC 
Sbjct: 540 LMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEG-SPIRVVKNLRVCN 598

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S ++ R I++RD NRFH F  G CSC D W
Sbjct: 599 DCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 158/351 (45%), Gaps = 47/351 (13%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           I   AL+S + + G   D  ++F +M  RD V+++  +A +A  G  REAL +F +M  D
Sbjct: 97  IVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLD 156

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
              P   T VS L+ACA L DLR G  +H ++    +   V V  AL ++Y K G I+ A
Sbjct: 157 GVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAA 216

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-- 268
              F ++  +N+V+W+ + + Y +N + +  I +   M L GL P+  T  ++L AC   
Sbjct: 217 VEAFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAI 276

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G +  AG +F  I   D V W +
Sbjct: 277 AALKQGRRIHERTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNS 336

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I    Q+G+ E AL LF  M  E ++P   + +SV+ +C+    L  G+    K  V  
Sbjct: 337 LIATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR----KHFVSF 392

Query: 354 VDDDLLVSSA-----LIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           + D  +   A     ++D+  + G   D+  +   MP   + V+W + +  
Sbjct: 393 IGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 443



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 138/262 (52%), Gaps = 7/262 (2%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA----KSGKLFYARD 80
           A++ +V    R      A  L   MDL+   PN   L + L    +    +SG L + R 
Sbjct: 129 AWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRV 188

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
               +    ++   AL++ + + G ++     F ++  ++ V+++   A +A    +R+A
Sbjct: 189 EAQGIQ-SGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYARNDRNRDA 247

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV--GNLGGNVFVRNALT 198
           ++V  RM  +   P   T VS L+ACA +  L++G++IH +  V  G L  +V+V  AL 
Sbjct: 248 IRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESDVYVLTALV 307

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +MY+K G +  A  +FD++ + +LV WN +I+   ++GQ +K ++LF+ M+L GL P  +
Sbjct: 308 NMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTII 367

Query: 259 TVSNILGACFQTGRIDDAGRLF 280
           T +++L AC   G +D   + F
Sbjct: 368 TFTSVLFACSHAGMLDQGRKHF 389


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/663 (36%), Positives = 375/663 (56%), Gaps = 61/663 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G V D +ALF+    RD VS+NT I+ F+      EAL  F  M  +  E
Sbjct: 235 NALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARW 212
               T  S L AC+ L  L  GK+IH  ++  N L  N FV +AL DMY    +++  R 
Sbjct: 295 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 354

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF--- 268
           +FD +  R +  WN MISGY +NG  +K + LF EM ++ GL P+  T+++++ AC    
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G++D +  +F  ++ +D V W TMI 
Sbjct: 415 AFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMIT 474

Query: 297 GYTQNGKEEDALILFNEMLSED-----------------VRPDKFSISSVVSSCAKLASL 339
           GY  +G+  +AL+L +EM   +                  +P+  ++ +V+  CA LA++
Sbjct: 475 GYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAI 534

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +H  A+   +  D+ V SAL+DMY KCG  + +  VFN MP +NV++WN +I   
Sbjct: 535 AKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMAC 594

Query: 400 AQNGQDLEALALYDKLLQE-----NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
             +G+  EAL L+  ++ E       KP+  TF++V +AC H+ L   G N F  +   H
Sbjct: 595 GMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDH 654

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEM 513
           G+ P+ DHYAC+++LLGR+  +++A +L+ ++P + + +  WS+LL  C +  +++ GE+
Sbjct: 655 GVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEV 714

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA++L  LEP  A  Y++LSN+Y++ G W     +R +M+   VKK    SWIE  ++VH
Sbjct: 715 AAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVH 774

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           KF++ D +HP++E ++  L  L +K+++ G+ P+T  VLH+  E+EK   +C HSEKLA+
Sbjct: 775 KFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAI 834

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ ++  P G T IR+ KN+RVC DCH   KF S I+ R II+RD  RFHHF  G CSC 
Sbjct: 835 AFGILNTPPGTT-IRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCG 893

Query: 694 DNW 696
           D W
Sbjct: 894 DYW 896



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 235/471 (49%), Gaps = 62/471 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G + D+  +FD++  RD VS+N+ IA         +AL+ F  MQ +  E
Sbjct: 132 NTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENME 191

Query: 154 PTDYTHVSALNACAQL---LDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
            + +T VS   AC+ L     LR GKQ+HG  + VG+     F  NAL  MYAK G +D 
Sbjct: 192 LSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGD--QKTFTNNALMAMYAKLGRVDD 249

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           ++ LF+   +R++VSWN MIS + ++ +  + +  F+ M L G+  D VT++++L AC  
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309

Query: 270 TGRID-----------------------------------DAG-RLFHVIKEKDNVCWTT 293
             R+D                                   ++G R+F  I  +    W  
Sbjct: 310 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 369

Query: 294 MIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           MI GY +NG +E ALILF EM+    + P+  +++SV+ +C    +  + + +HG AV L
Sbjct: 370 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKL 429

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  +D  V +AL+DMY + G  D + T+F+ M  R+ VSWN+MI GY  +G+   AL L 
Sbjct: 430 GFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLL 489

Query: 413 DKLLQ-EN----------------LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
            ++ + EN                 KP++ T ++VL  C       +G+    + +  + 
Sbjct: 490 HEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGK-EIHAYAIRNM 548

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +   +   + ++++  +   ++ +  +   +P+K N + W+ L+  C M G
Sbjct: 549 LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHG 598



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/438 (27%), Positives = 209/438 (47%), Gaps = 58/438 (13%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P R + S+  A+         REA+  +  M      P ++   + L A + L DL+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 177 QIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           QIH   V  G    +V V N L +MY K G I     +FDR+ +R+ VSWN  I+   + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
            + ++ ++ F+ MQ+  +     T+ ++  AC                            
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF 232

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + GR+DD+  LF    ++D V W TMI  ++Q+ +  +AL  F  M+ E 
Sbjct: 233 TNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEG 292

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD---DLLVSSALIDMYCKCGVTD 375
           V  D  +I+SV+ +C+ L  L  G+ +H  A VL  +D   +  V SAL+DMYC C   +
Sbjct: 293 VELDGVTIASVLPACSHLERLDVGKEIH--AYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSAC 434
               VF+ +  R +  WN+MI+GYA+NG D +AL L+ ++++   L P++ T  SV+ AC
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 435 LHADLFERGQNHFDSISAVHGITPSL----DHYA--CMINLLGRSSDVDKAVDLIKSLPH 488
           +H + F   +       ++HG    L    D Y    ++++  R   +D +  +  S+  
Sbjct: 411 VHCEAFSNKE-------SIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEV 463

Query: 489 KPNSLIWSTLLSVCAMKG 506
           + + + W+T+++   + G
Sbjct: 464 R-DRVSWNTMITGYVLSG 480


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/669 (35%), Positives = 380/669 (56%), Gaps = 38/669 (5%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD--------------- 108
           +L+ FYA  G L   R +FD M  +++  WN ++S +A+ G  ++               
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 109 -----LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                   LFDK+  RD +S+N+ I+G+ + G +   L ++ +M     +    T +S L
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
             CA+   L  GK +H   +  +    +   N L DMY+K G++D A  +F++M  RN+V
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  MI+GY ++G     I L Q+M+  G+  D V +++IL AC ++G +D+   +   I
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 284 KEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------RPDKFSISS 328
           K  +      VC   M + Y + G  E A  +F+ M+ +D+          +PD  +++ 
Sbjct: 241 KANNMASNLFVCNALMDM-YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMAC 299

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++ +CA L++L  G+ +HG  +  G   D  V++AL+D+Y KCGV   A  +F+M+P+++
Sbjct: 300 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 359

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +VSW  MI GY  +G   EA+A ++++    ++PD  +F+S+L AC H+ L E+G   F 
Sbjct: 360 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 419

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +     I P L+HYACM++LL R+ ++ KA   I++LP  P++ IW  LL  C +  DI
Sbjct: 420 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDI 479

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  E  A  +FELEP N G Y++L+N+YA   +WE+V  +R  +  K ++K    SWIEI
Sbjct: 480 ELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEI 539

Query: 569 DNKVHKFVS-EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
             +V+ FVS  + +HP ++ I   L K+ +K++E G+ P TK  L +  E +K  ++C H
Sbjct: 540 KGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGH 599

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L+  P   T IR+ KN+RVCGDCH   KF S    R I+LRDSNRFHHF  
Sbjct: 600 SEKLAMAFGLLTLPPRKT-IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 658

Query: 688 GNCSCKDNW 696
           G CSC+  W
Sbjct: 659 GYCSCRGFW 667



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 144/311 (46%), Gaps = 50/311 (16%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
            +++ C +   + L K + S    + +E    F  N LL  Y+K G L  A  +F+KM  
Sbjct: 118 SVLVGCAKSGTLSLGKAVHSLAIKSSFERRINF-SNTLLDMYSKCGDLDGALRVFEKMGE 176

Query: 88  RDIISWNALLSAH-----------------------------------ARSGSVQDLRAL 112
           R+++SW ++++ +                                   ARSGS+ + + +
Sbjct: 177 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 236

Query: 113 FDKMPIRDSVS----YNTAIAGFANKGFSREALQVFSRM-QKD---------RFEPTDYT 158
            D +   +  S     N  +  +A  G    A  VFS M  KD           +P   T
Sbjct: 237 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRT 296

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L ACA L  L RGK+IHG I+      +  V NAL D+Y K G +  AR LFD + 
Sbjct: 297 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 356

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           +++LVSW +MI+GY  +G   + I  F EM+  G+ PDEV+  +IL AC  +G ++   R
Sbjct: 357 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 416

Query: 279 LFHVIKEKDNV 289
            F+++K   N+
Sbjct: 417 FFYIMKNDFNI 427



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 50/200 (25%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A T ++  C R   ++  K +  ++  N    N  F+ N L+  YAK G +  A  +F  
Sbjct: 216 AITSILHACARSGSLDNGKDVHDYIKANNMASNL-FVCNALMDMYAKCGSMEGANSVFST 274

Query: 85  MPLRDIISW-------------------------------------------------NA 95
           M ++DIISW                                                 NA
Sbjct: 275 MVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 334

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +   R LFD +P +D VS+   IAG+   G+  EA+  F+ M+    EP 
Sbjct: 335 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 394

Query: 156 DYTHVSALNACAQLLDLRRG 175
           + + +S L AC+    L +G
Sbjct: 395 EVSFISILYACSHSGLLEQG 414


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/638 (36%), Positives = 357/638 (55%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL A+ + G +   R +F +M  +D+V+YN  + G + +G   +ALQ+F+ M++    
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIP 233

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            T +T  S L   A +  L  G Q+H  ++      NVFV N+L D Y+K   +D  R L
Sbjct: 234 ATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 293

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ------------------------ 249
           FD M  R+ VS+N++I+ Y  N      + LF+EMQ                        
Sbjct: 294 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 250 -----------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                      LLGL  +++  + ++    + G +D A   F    EK  + WT +I GY
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG+ E+AL LF++M    +RPD+ + SS++ + + LA +  G+ +H   +  G    +
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSV 473

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              S L+DMY KCG  D+A   F+ MP RN +SWN++I+ YA  G+   A+ +++ +L  
Sbjct: 474 FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHC 533

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PDS TF+SVL+AC H  L +    +F  +   + I+P  +HYAC+I+ LGR     +
Sbjct: 534 GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQ 593

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
              ++  +P K + +IW+++L  C + G+ +   +AA  LF +EP +A PY++LSN+YA 
Sbjct: 594 VQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYAR 653

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+WED A ++  M+ + V+K + YSW+EI  K++ F S D T P  + I +EL +L K+
Sbjct: 654 AGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKE 713

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           + + G+ P+    LH    E K++S+ YHSE+LA+A+ L+  P G TPIRIMKN+  C D
Sbjct: 714 MDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG-TPIRIMKNLTACLD 772

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S I+ R II+RDS RFHHF  G CSC D W
Sbjct: 773 CHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 225/488 (46%), Gaps = 42/488 (8%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T+  N  L     SG L  AR +FD+MP ++I S N +LSA++ SG +   + LF   P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R++ ++   +   A  G + +AL +F  M  +   P   T  + LN     +       +
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSL 157

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +VFV N L D Y K G +  AR +F  M++++ V++N M+ G  K G  
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR-------------------------- 272
            + + LF  M+  G+     T S+IL                                  
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSL 277

Query: 273 ---------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                    +DD  RLF  + E+DNV +  +I  Y  N      L LF EM         
Sbjct: 278 LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
              ++++S    L  ++ G+ +H + V+LG+  + L+ +ALIDMY KCG+ D A + F+ 
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
              ++ +SW ++I GY QNGQ  EAL L+  + +  L+PD  TF S++ A     +   G
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG 457

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +    S     G   S+   + ++++  +   +D+A+     +P + NS+ W+ ++S  A
Sbjct: 458 RQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYA 515

Query: 504 MKGDIKHG 511
             G+ K+ 
Sbjct: 516 HYGEAKNA 523



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ ++   + +  + L ++L S++  + Y+ ++ F  + L+  YAK G L  A   FD+M
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSRE 139
           P R+ ISWNA++SA+A  G  ++   +F+ M      P  DSV++ + +A  ++ G + E
Sbjct: 500 PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP--DSVTFLSVLAACSHNGLADE 557

Query: 140 ALQVFSRMQ 148
            ++ F  M+
Sbjct: 558 CMKYFHLMK 566



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           + S + L+  +A+ G + +    FD+MP R+S+S+N  I+ +A+ G ++ A+++F  M  
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 150 DRFEPTDYTHVSALNACAQ 168
             F P   T +S L AC+ 
Sbjct: 533 CGFNPDSVTFLSVLAACSH 551


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/645 (36%), Positives = 372/645 (57%), Gaps = 40/645 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
            + F+  RL++ YA  G +  +R  FD++P +D+ +WN+++SA+  +G            
Sbjct: 49  QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNG------------ 96

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                  ++ AI  F            +  +      P  YT    L AC  L+D   G+
Sbjct: 97  ------HFHEAIGCF------------YQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 135

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH          NVFV  +L  MY++ G    AR LFD M  R++ SWN MISG ++NG
Sbjct: 136 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 195

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----QTGRIDDAGRLFHVIKEKDNVCWT 292
              + +D+  EM+L G+  + VTV +IL        + G +D A ++F +I  KD + W 
Sbjct: 196 NAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWN 255

Query: 293 TMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+I GY QNG   +A+ ++  M   +++ P++ +  S++ + A + +L  G  +HG+ + 
Sbjct: 256 TLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIK 315

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ V++ LID+Y KCG   DA ++F  +P  + V+WN++I+ +  +G   + L L
Sbjct: 316 TNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKL 375

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++L E +KPD  TFVS+LSAC H+   E G+  F  +   +GI PSL HY CM++LLG
Sbjct: 376 FGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLG 434

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++ A D IK +P +P++ IW  LL  C + G+I+ G+ A+  LFE++  N G Y++
Sbjct: 435 RAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVL 494

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G+WE V  +RS  + + +KK   +S IE++ KV  F + +++HP+ + IYEE
Sbjct: 495 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEE 554

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   VL D +E+EK   +  HSE+LA+A+ +I  P   +PIRI K
Sbjct: 555 LRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIFK 613

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   KF S I  R I++RDSNRFHHF  G CSC D W
Sbjct: 614 NLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 186/391 (47%), Gaps = 39/391 (9%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            K +H  +VV     ++F+   L ++YA  G++  +R  FD++  +++ +WN MIS Y+ 
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 235 NGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
           NG   + I  F ++ L+  + PD  T   +L AC   G + D GR  H    K    W  
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVD-GRKIHCWAFKLGFQWNV 150

Query: 294 MIVG-----YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
            +       Y++ G    A  LF++M   D+      IS ++ +     +L     +  +
Sbjct: 151 FVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 210

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            + +     + +    +DMY K G+ D A  VF ++P ++V+SWN++I GYAQNG   EA
Sbjct: 211 GIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 270

Query: 409 LALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG----ITPSLDH 462
           + +Y K+++E   + P+  T+VS+L A  H    ++G         +HG        LD 
Sbjct: 271 IEVY-KMMEECKEIIPNQGTWVSILPAYAHVGALQQGMK-------IHGRVIKTNLHLDV 322

Query: 463 Y--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +   C+I++ G+   +  A+ L   +P + +S+ W+ ++S   + G   H E   +   E
Sbjct: 323 FVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHG---HAEKTLKLFGE 378

Query: 521 LEPINAGP-YIMLSNMYAAC--------GRW 542
           +      P ++   ++ +AC        G+W
Sbjct: 379 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 409


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/671 (36%), Positives = 366/671 (54%), Gaps = 71/671 (10%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            ++ N L++ YA  G +  AR LFD+ P+ D +SWN++L+ + + G V++ + +FD+MP 
Sbjct: 176 VYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQ 235

Query: 119 R-------------------------------DSVSYNTAIAGFANKGFSREALQVFSRM 147
           R                               D VS++  I+G+   G   EAL +F  M
Sbjct: 236 RNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 295

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             +     +   VS L+ACA L  ++ GK IHG ++   +   V ++NAL  MY+  GEI
Sbjct: 296 NANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEI 355

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A+ LF+  +N + +SWN MISG                                   C
Sbjct: 356 MDAQKLFNGSHNLDQISWNSMISG-----------------------------------C 380

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G ++ A  LF V+ EKD V W+ +I GY Q+    + L LF+EM    +RPD+  + 
Sbjct: 381 MKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILV 440

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+S+C  LA+L  G+ VH      G+  ++++ + L+DMY KCG  ++A  VFN M  +
Sbjct: 441 SVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK 500

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            V SWN++I G A NG    +L ++ ++    + P+  TF+ VL AC H  L + G+ HF
Sbjct: 501 GVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 560

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
            S+   HGI P++ HY CM++LLGR+  +++A  LI+S+P  P+   W  LL  C   GD
Sbjct: 561 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 620

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
            + GE   R L EL+P + G +++LSN++A+ G WEDV  +R  MK + V K    S IE
Sbjct: 621 TEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIE 680

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
            +  VH+F++ D+THP    +   L+++ K+L+  G++P+T  V  D  EEEK  ++  H
Sbjct: 681 ANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRH 740

Query: 628 SEKLALAYCL--IKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           SEKLA+A+ L  I  P   TPIRIMKN+R+C DCH   K  S    R I++RD +RFH+F
Sbjct: 741 SEKLAIAFGLLTISPP---TPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYF 797

Query: 686 VGGNCSCKDNW 696
             G CSC D W
Sbjct: 798 KEGACSCMDYW 808



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 227/429 (52%), Gaps = 37/429 (8%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FD++   +   +NT +  +     + +AL ++  M K+   P +YT+   + ACA  L 
Sbjct: 97  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 156

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              GK+IH  ++      +V+V+N L +MYA  G +  AR LFD     + VSWN +++G
Sbjct: 157 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 216

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y+K G  ++   +F +M       + V  ++++    + G++ +A +LF+ + EKD V W
Sbjct: 217 YVKKGDVEEAKLIFDQMP----QRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSW 272

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + +I GY QNG  E+AL++F EM +  +R D+  + SV+S+CA L+ +  G+++HG  + 
Sbjct: 273 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 332

Query: 352 LGVDDDLLVSSALIDMYC-------------------------------KCGVTDDAWTV 380
           +G++  + + +ALI MY                                KCG  + A  +
Sbjct: 333 MGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARAL 392

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F++MP +++VSW+++I+GYAQ+    E LAL+ ++    ++PD    VSV+SAC H    
Sbjct: 393 FDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAAL 452

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++G+     I   +G+  ++     ++++  +   V+ A+++   +  K  S  W+ L+ 
Sbjct: 453 DQGKWVHAYIRK-NGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVS-SWNALII 510

Query: 501 VCAMKGDIK 509
             A+ G ++
Sbjct: 511 GLAVNGLVE 519



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 157/328 (47%), Gaps = 32/328 (9%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D +  +FDR+ N N   WN M+  Y+++   +K + L++ M    + PD  T   ++ A
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQA 150

Query: 267 C------FQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           C      F    I D     HV+K   + D     T+I  Y   G   DA  LF+E    
Sbjct: 151 CAVRLLEFGGKEIHD-----HVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDE---- 201

Query: 318 DVRP--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              P  D  S +S+++   K   +   +++  +        +++ S+++I +  K G   
Sbjct: 202 --SPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM----PQRNIVASNSMIVLLGKMGQVM 255

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           +AW +FN M  +++VSW+++I+GY QNG   EAL ++ ++    ++ D    VSVLSAC 
Sbjct: 256 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACA 315

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           H  + + G+     +    GI   ++    +I++   S ++  A  L     H  + + W
Sbjct: 316 HLSIVKTGK-MIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNG-SHNLDQISW 373

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEP 523
           ++++S C   G ++     AR LF++ P
Sbjct: 374 NSMISGCMKCGSVE----KARALFDVMP 397



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 94/181 (51%), Gaps = 6/181 (3%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGR----IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
           +  +M L G   D    S +L   F T      +D + ++F  I+  +   W TM+  Y 
Sbjct: 60  ILSQMILTGFISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYI 117

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q+   E AL+L+  M+  +V PD ++   VV +CA     + G+ +H   + +G D D+ 
Sbjct: 118 QSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVY 177

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V + LI+MY  CG   DA  +F+  P  + VSWNS++ GY + G   EA  ++D++ Q N
Sbjct: 178 VQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRN 237

Query: 420 L 420
           +
Sbjct: 238 I 238


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/655 (36%), Positives = 377/655 (57%), Gaps = 14/655 (2%)

Query: 49  MDLNFYEPN-TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL----LSAHARS 103
           ++L+   P  T FL  ++L  Y     L   R +  ++ L D+   ++L    + A+A  
Sbjct: 31  LELDQKSPQETVFLLGQVLDTYPDIRTL---RTVHSRIILEDLRCNSSLGVKLMRAYASL 87

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
             V   R +FD++P R+ +  N  I  + N GF  E ++VF  M      P  YT    L
Sbjct: 88  KDVASARKVFDEIPERNVIIINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVL 147

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC+    +  G++IHG      L   +FV N L  MY K G + +AR + D M+ R++V
Sbjct: 148 KACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVV 207

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RIDDAGRLFH 281
           SWN ++ GY +N +    +++ +EM+ + ++ D  T++++L A   T    +     +F 
Sbjct: 208 SWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFF 267

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            + +K  V W  MI  Y +N    +A+ L++ M ++   PD  SI+SV+ +C   ++L  
Sbjct: 268 KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSL 327

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +HG      +  +LL+ +ALIDMY KCG  + A  VF  M +R+VVSW +MI+ Y  
Sbjct: 328 GKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGF 387

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G+  +A+AL+ KL    L PDS  FV+ L+AC HA L E G++ F  ++  + ITP L+
Sbjct: 388 SGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLE 447

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           H ACM++LLGR+  V +A   I+ +  +PN  +W  LL  C +  D   G +AA  LF+L
Sbjct: 448 HLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQL 507

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
            P  +G Y++LSN+YA  GRWE+V +IR+ MKSK +KK    S +E++  +H F+  DR+
Sbjct: 508 APEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRS 567

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI--- 638
           HP+++ IY EL  L+KK++E G+ P+++  LHD +EE+K   +  HSEKLA+ + L+   
Sbjct: 568 HPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTK 627

Query: 639 -KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
            ++      IRI KN+R+CGDCH+  K  S I  R II+RD+NRFH F  G CSC
Sbjct: 628 EEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSC 682



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 88/174 (50%), Gaps = 19/174 (10%)

Query: 14  LYSRGQAATEE----AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           LYSR +A   E    + T ++  C   + + L K++  +++     PN   L N L+  Y
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNL-LLENALIDMY 354

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYN 125
           AK G L  ARD+F+ M  RD++SW A++SA+  SG   D  ALF K+     + DS+++ 
Sbjct: 355 AKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFV 414

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDL--RRGK 176
           T +A  ++ G   E    F  M       TD+  ++  L   A ++DL  R GK
Sbjct: 415 TTLAACSHAGLLEEGRSCFKLM-------TDHYKITPRLEHLACMVDLLGRAGK 461



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 113/256 (44%), Gaps = 18/256 (7%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS----WNALL 97
           A  L S M+ + +EP+   + + +L     +  L   + +   +  + +I      NAL+
Sbjct: 293 AVELYSRMEADGFEPDAVSITS-VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
             +A+ G ++  R +F+ M  RD VS+   I+ +   G   +A+ +FS++Q     P   
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKA-RWLF 214
             V+ L AC+    L  G+    K++  +      + +   + D+  + G++ +A R++ 
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCF-KLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQ 470

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQT 270
           D     N   W  ++     +      I L    +L  L P++    V +SNI     + 
Sbjct: 471 DMSMEPNERVWGALLGACRVHSDTD--IGLLAADKLFQLAPEQSGYYVLLSNIYA---KA 525

Query: 271 GRIDDAGRLFHVIKEK 286
           GR ++   + +++K K
Sbjct: 526 GRWEEVTNIRNIMKSK 541


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 369/669 (55%), Gaps = 65/669 (9%)

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDS-----VSYNTAIAGFANKGFSREALQVFSR 146
           ++NALLS +AR G V D + LF  +   DS     V++NT ++     G   EA++V   
Sbjct: 202 AFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYD 261

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGG 205
           M      P   T  SAL AC+QL  L  G+++H  ++   +L  N FV +AL DMYA   
Sbjct: 262 MVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHE 321

Query: 206 EIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSN 262
            +  AR +FD +   +R L  WN M+ GY + G  ++ ++LF  M+   G+ P E T++ 
Sbjct: 322 RVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAG 381

Query: 263 ILGACFQT-----------------------------------GRIDDAGRLFHVIKEKD 287
           +L AC ++                                   G ++ A  +F  I+ +D
Sbjct: 382 VLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRD 441

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLS------------------EDVRPDKFSISSV 329
            V W T+I G    G   DA  L  EM                    E V P+  ++ ++
Sbjct: 442 VVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTL 501

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +  CA LA+   G+ +HG A+   +D D+ V SAL+DMY KCG    +  VF+ +P RNV
Sbjct: 502 LPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNV 561

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFD 448
           ++WN +I  Y  +G   EA+AL+D+++  N  KP+  TF++ L+AC H+ + +RG   F 
Sbjct: 562 ITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFH 621

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVCAMKGD 507
           S+   HG+ P+ D +AC +++LGR+  +D+A  +I S+ P +     WS+ L  C +  +
Sbjct: 622 SMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRN 681

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           +  GE+AA  LF+LEP  A  Y++L N+Y+A G WE  + +R+ M+ + V K    SWIE
Sbjct: 682 VPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIE 741

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           +D  +H+F++ +  HPE+ +++  +  L ++++  G++P+T  VLHD +E EK   + YH
Sbjct: 742 LDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYH 801

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L++ P G T IR+ KN+RVC DCH   KF S ++GR I+LRD  RFHHFV 
Sbjct: 802 SEKLAIAFGLLRTPPGAT-IRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVD 860

Query: 688 GNCSCKDNW 696
           G CSC D W
Sbjct: 861 GACSCGDYW 869



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/479 (26%), Positives = 218/479 (45%), Gaps = 69/479 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NALL+A+AR G +    ALF+ MP RD+V++N+ IA          AL     M  +   
Sbjct: 100 NALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHP 159

Query: 154 PTDYTHVSALNACAQLL-DLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEIDKA 210
            + +T VS L AC+ L  DLR G++ H   +      G   F  NAL  MYA+ G +D A
Sbjct: 160 LSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDA 219

Query: 211 RWLFDRMNNRN-----LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           + LF  ++  +     +V+WN M+S  +++G+  + I++  +M   G+ PD +T ++ L 
Sbjct: 220 QMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALP 279

Query: 266 ACFQTGRIDDAGRLFH--VIKEKDNVC--------------------------------- 290
           AC Q   +   GR  H  V+K+ D                                    
Sbjct: 280 ACSQLEML-SLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHR 338

Query: 291 ----WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVV 345
               W  M+ GY Q G +E+AL LF  M +E  V P + +I+ V+ +CA+  +    + V
Sbjct: 339 QLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAV 398

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG  +  G+ D+  V +AL+D+Y + G  + A  +F  +  R+VVSWN++I G    G  
Sbjct: 399 HGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHI 458

Query: 406 LEALALYDKLLQ------------------ENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            +A  L  ++ Q                  E + P++ T +++L  C       +G+   
Sbjct: 459 HDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKE-I 517

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              +  H +   +   + ++++  +   +  +  +   LP K N + W+ L+    M G
Sbjct: 518 HGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMHG 575



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 184/400 (46%), Gaps = 59/400 (14%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           A  + A L  L   + IHG  +  +L  G    V NAL   YA+ G++  A  LF+ M +
Sbjct: 65  AAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPS 124

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------ 267
           R+ V++N +I+      +    +D  ++M L G      T+ ++L AC            
Sbjct: 125 RDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGRE 184

Query: 268 --------------------------FQTGRIDDAGRLFHVIKEKDN-----VCWTTMIV 296
                                      + G +DDA  LF  +   D+     V W TM+ 
Sbjct: 185 AHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVS 244

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              Q+G+  +A+ +  +M++  VRPD  + +S + +C++L  L  G+ +H  A VL  D 
Sbjct: 245 LLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMH--AYVLK-DS 301

Query: 357 DL----LVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALA 410
           DL     V+SAL+DMY        A  VF+M+P   R +  WN+M+ GYAQ G D EAL 
Sbjct: 302 DLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALE 361

Query: 411 LYDKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           L+ ++  E  + P   T   VL AC  ++ F  G+          G+  +      +++L
Sbjct: 362 LFARMEAEAGVVPSETTIAGVLPACARSETFA-GKEAVHGYVLKRGMADNPFVQNALMDL 420

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDI 508
             R  D++ A  +  ++  +P  ++ W+TL++ C ++G I
Sbjct: 421 YARLGDMEAARWIFAAI--EPRDVVSWNTLITGCVVQGHI 458



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 16/197 (8%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL------VSSALIDMYCKCGVTD 375
           D F++     S A L SL   + +HG A+      DLL      V++AL+  Y +CG   
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAAL----RRDLLHGFTPAVANALLTAYARCGDLT 113

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +FN MP+R+ V++NS+I       + L AL     +L E     SFT VSVL AC 
Sbjct: 114 AALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACS 173

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSL--PHKPN 491
           H     R      + +  +G     + +A   ++++  R   VD A  L  S+     P 
Sbjct: 174 HLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPG 233

Query: 492 S--LIWSTLLSVCAMKG 506
              + W+T++S+    G
Sbjct: 234 GGVVTWNTMVSLLVQSG 250


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/614 (38%), Positives = 364/614 (59%), Gaps = 47/614 (7%)

Query: 85  MPLRDIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           M L+  ++WN++L+  ++  G +++ + LF K+P  D+VSYNT ++ +        A   
Sbjct: 1   MTLKTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAF 60

Query: 144 FSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           F  M  KD   P+  T ++                                       +A
Sbjct: 61  FEDMPIKD--TPSWNTMITG--------------------------------------FA 80

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           +  ++DKAR LF  M  +N+V+WN MISGY++ G     + LF++     +    V  + 
Sbjct: 81  QNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKSV----VAWTA 136

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++    + GRI  A RLF  + EK+ V W  MI GY +N + ED + LF  M+   ++P+
Sbjct: 137 MITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPN 196

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             ++SS +  C++L++L  G+ VH       + DD    ++LI MYCKCGV +D W +F 
Sbjct: 197 SSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFV 256

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            +P R+VV+WN+MI+GYAQ+G+  +AL L+D+++++ +KPD  TFV+VL AC HA   + 
Sbjct: 257 QVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDL 316

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G  +F S++  +G+    DHY CM++LLGR+  + +AVDLI+ +P KP++ ++ TLL  C
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGAC 376

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  + +  E A++ L  L+P +A  Y+ L+N+YAA  RW+ VA +R SMKS  V K   
Sbjct: 377 RIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPG 436

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
           YSWIE+ +  H+F S D+ HPE   I+ +L +L KK++ AG+ P+ +  LHD  EE+K +
Sbjct: 437 YSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQ 496

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            + +HSEKLA+AY LIK P G TPIR+ KN+RVCGDCH  +K+ S I  R II+RD+ RF
Sbjct: 497 LLLWHSEKLAIAYGLIKLPPG-TPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRF 555

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G+CSC D W
Sbjct: 556 HHFKDGHCSCADYW 569



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 155/315 (49%), Gaps = 48/315 (15%)

Query: 57  NTTFLHNRLLHFYAKS-GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
            TT   N +L   +K  GKL  A++LF K+P  D +S+N +LS + R+ +++  +A F+ 
Sbjct: 4   KTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFED 63

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD--YTHVSALNACAQLLDLR 173
           MPI+D+ S+NT I GFA      +A  +F  M      PT    T  + ++   +  DL 
Sbjct: 64  MPIKDTPSWNTMITGFAQNQQMDKARDLFLIM------PTKNVVTWNAMISGYVECGDLD 117

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
              ++  K        +V    A+   Y K G I  A  LF++M  +NLV+WN MI+GY+
Sbjct: 118 SALKLFEKAPF----KSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYI 173

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR---------------- 272
           +N + +  + LF+ M   G+ P+  T+S+ L  C      Q GR                
Sbjct: 174 ENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTT 233

Query: 273 --------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                         ++D  +LF  +  +D V W  MI GY Q+G+ + AL LF+EM+ + 
Sbjct: 234 AGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKG 293

Query: 319 VRPDKFSISSVVSSC 333
           ++PD  +  +V+ +C
Sbjct: 294 MKPDWITFVAVLMAC 308



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 142/276 (51%), Gaps = 8/276 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y + G L  A  LF+K P + +++W A+++ + + G +     LF+KMP ++ V
Sbjct: 104 NAMISGYVECGDLDSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLV 163

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++N  IAG+     + + +++F  M     +P   T  SAL  C++L  L+ G+Q+H  +
Sbjct: 164 TWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLV 223

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               L  +     +L  MY K G ++    LF ++  R++V+WN MISGY ++G+ KK +
Sbjct: 224 CKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKAL 283

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
            LF EM   G+ PD +T   +L AC   G  D   + FH + +   +      +T M+  
Sbjct: 284 GLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDL 343

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             + GK  +A+ L  +M     +P      +++ +C
Sbjct: 344 LGRAGKLVEAVDLIEKM---PFKPHAAVFGTLLGAC 376


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/674 (36%), Positives = 387/674 (57%), Gaps = 82/674 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKM-------------------------------PLR 88
           F+ N +L  YAK+G++  AR+LF++M                               P R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +II+W ++++ +A+ G ++  R  FD+MP R  VS+N   + +A K   +EAL +F +M 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P D T V  +++C+ + D      I   I   ++  N FV+ AL DM+AK G ++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 209 KARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            AR +FD + + RN V+WN+MIS Y +                                 
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTR--------------------------------- 337

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSI 326
              G++  A  LF  + ++D V W +MI GY QNG+   ++ LF EM+S  D++PD+ +I
Sbjct: 338 --VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTI 395

Query: 327 SSVVSSCAKLASL----YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           +SV+S+C  + +L    +   +V  K + LG+       ++LI MY KCG   DA  +F 
Sbjct: 396 ASVLSACGHIGALKLSYWVLDIVREKNIKLGISG----FNSLIFMYSKCGSVADAHRIFQ 451

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M TR+VVS+N++I+G+A NG   EA+ L   + +E ++PD  T++ VL+AC HA L   
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNE 511

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+N F SI A     P++DHYACM++LLGR+ ++D+A  LI+S+P KP++ ++ +LL+  
Sbjct: 512 GKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNAS 566

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +   +  GE+AA  LFELEP N G Y++LSN+YA+ GRWEDV  +R  MK   +KK   
Sbjct: 567 RIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVG 626

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SW+E   +VHKF   DR+H +++ IY+ L++L +K++  GF  +    L D +EEEK +
Sbjct: 627 MSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEE 686

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLA+ + L+    G T IR++KN+R+C DCH  +K  S + GR I++RD+NRF
Sbjct: 687 MLGTHSEKLAICFALLISEVGTT-IRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 683 HHFVGGNCSCKDNW 696
           H F  G CSC D W
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 227/493 (46%), Gaps = 61/493 (12%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F   P  D+  Y+  +  ++  G   + + +F         P  + ++  +      L
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----L 109

Query: 171 DLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             + G   H  ++ +G++  + F+RNA+ DMYAK G++D AR LF++M  R L  WN MI
Sbjct: 110 AGKSGNMFHAYVLKLGHIDDH-FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMI 168

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           SG  K+G   + + LF  M    +    +T ++++    + G ++ A R F  + E+  V
Sbjct: 169 SGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG----QVV 345
            W  M   Y Q    ++AL LF++ML E + PD  +    +SSC+ +          +++
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA---------------WTV---------- 380
             K +VL    +  V +AL+DM+ K G  + A               W +          
Sbjct: 285 DQKHIVL----NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGK 340

Query: 381 -------FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLS 432
                  F+ MP R+VVSWNSMI GYAQNG+   ++ L+ +++   +++PD  T  SVLS
Sbjct: 341 LSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLS 400

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H    +      D +     I   +  +  +I +  +   V  A  + +++  + + 
Sbjct: 401 ACGHIGALKLSYWVLDIVRE-KNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DV 458

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP----YIMLSNMYAACGRWEDVASI 548
           + ++TL+S  A  G   HG+ A + +  +E     P    YI +    +  G   +  ++
Sbjct: 459 VSFNTLISGFAANG---HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNV 515

Query: 549 RSSMKSKNVKKFA 561
             S+++  V  +A
Sbjct: 516 FKSIQAPTVDHYA 528



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 155/308 (50%), Gaps = 13/308 (4%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRL-----QSHMDLNFYEPNTTFLHNRLLHF 68
           +   G    +  +   +  C+ + D  LA  +     Q H+ LN      +F+   LL  
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLN------SFVKTALLDM 302

Query: 69  YAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           +AK G L  AR++FD++   R+ ++WN ++SA+ R G +   R LFD MP RD VS+N+ 
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 128 IAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
           IAG+A  G S  ++++F  M      +P + T  S L+AC  +  L+    +   +   N
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           +   +   N+L  MY+K G +  A  +F  M  R++VS+N +ISG+  NG  K+ I L  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
            M+  G+ PD VT   +L AC   G +++   +F  I+      +  M+    + G+ ++
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDE 542

Query: 307 ALILFNEM 314
           A +L   M
Sbjct: 543 AKMLIQSM 550



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 161/391 (41%), Gaps = 81/391 (20%)

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL----TDMYAKGGEIDKARWLFDRMNNRNL 222
           +++ ++R+ +Q HG +V  +L  + +  + L    T ++A    +D    +F    + + 
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDS---IFTSSPSPDA 65

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP--------------------------- 255
             ++ M+  Y + G   + + LF+    L L P                           
Sbjct: 66  SVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLG 125

Query: 256 ---DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
              D    + IL    + G++D A  LF  + E+    W +MI G  ++G E +A++LFN
Sbjct: 126 HIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M + ++                                       +  ++++  Y K G
Sbjct: 186 MMPARNI---------------------------------------ITWTSMVTGYAKMG 206

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A   F+ MP R+VVSWN+M + YAQ     EAL L+ ++L+E + PD  T+V  +S
Sbjct: 207 DLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTIS 266

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           +C          +    I   H +  S    A ++++  +  +++ A ++   L  + N+
Sbjct: 267 SCSSIGDPTLADSILRMIDQKHIVLNSFVKTA-LLDMHAKFGNLEIARNIFDELGSQRNA 325

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + W+ ++S     G +      AR LF+  P
Sbjct: 326 VTWNIMISAYTRVGKLS----LARELFDNMP 352


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/638 (36%), Positives = 357/638 (55%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL A+ + G +   R +F +M  +D+V+YN  + G + +G   +ALQ+F+ M++    
Sbjct: 174 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIP 233

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            T +T  S L   A +  L  G Q+H  ++      NVFV N+L D Y+K   +D  R L
Sbjct: 234 ATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 293

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ------------------------ 249
           FD M  R+ VS+N++I+ Y  N      + LF+EMQ                        
Sbjct: 294 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 353

Query: 250 -----------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                      LLGL  +++  + ++    + G +D A   F    EK  + WT +I GY
Sbjct: 354 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 413

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG+ E+AL LF++M    +RPD+ + SS++ + + LA +  G+ +H   +  G    +
Sbjct: 414 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSV 473

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              S L+DMY KCG  D+A   F+ MP RN +SWN++I+ YA  G+   A+ +++ +L  
Sbjct: 474 FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHC 533

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PDS TF+SVL+AC H  L +    +F  +   + I+P  +HYAC+I+ LGR     +
Sbjct: 534 GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQ 593

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
              ++  +P K + +IW+++L  C + G+ +   +AA  LF +EP +A PY++LSN+YA 
Sbjct: 594 VQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYAR 653

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+WED A ++  M+ + V+K + YSW+EI  K++ F S D T P  + I +EL +L K+
Sbjct: 654 AGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKE 713

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           + + G+ P+    LH    E K++S+ YHSE+LA+A+ L+  P G TPIRIMKN+  C D
Sbjct: 714 MDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG-TPIRIMKNLTACLD 772

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S I+ R II+RDS RFHHF  G CSC D W
Sbjct: 773 CHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  191 bits (486), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/488 (27%), Positives = 225/488 (46%), Gaps = 42/488 (8%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T+  N  L     SG L  AR +FD+MP ++I S N +LSA++ SG +   + LF   P 
Sbjct: 43  TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 102

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R++ ++   +   A  G + +AL +F  M  +   P   T  + LN     +       +
Sbjct: 103 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSL 157

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +VFV N L D Y K G +  AR +F  M++++ V++N M+ G  K G  
Sbjct: 158 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 217

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR-------------------------- 272
            + + LF  M+  G+     T S+IL                                  
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSL 277

Query: 273 ---------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                    +DD  RLF  + E+DNV +  +I  Y  N      L LF EM         
Sbjct: 278 LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
              ++++S    L  ++ G+ +H + V+LG+  + L+ +ALIDMY KCG+ D A + F+ 
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
              ++ +SW ++I GY QNGQ  EAL L+  + +  L+PD  TF S++ A     +   G
Sbjct: 398 RSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG 457

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +    S     G   S+   + ++++  +   +D+A+     +P + NS+ W+ ++S  A
Sbjct: 458 RQ-LHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYA 515

Query: 504 MKGDIKHG 511
             G+ K+ 
Sbjct: 516 HYGEAKNA 523



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ ++   + +  + L ++L S++  + Y+ ++ F  + L+  YAK G L  A   FD+M
Sbjct: 441 FSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTFDEM 499

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSRE 139
           P R+ ISWNA++SA+A  G  ++   +F+ M      P  DSV++ + +A  ++ G + E
Sbjct: 500 PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP--DSVTFLSVLAACSHNGLADE 557

Query: 140 ALQVFSRMQ 148
            ++ F  M+
Sbjct: 558 CMKYFHLMK 566



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           + S + L+  +A+ G + +    FD+MP R+S+S+N  I+ +A+ G ++ A+++F  M  
Sbjct: 473 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 150 DRFEPTDYTHVSALNACAQ 168
             F P   T +S L AC+ 
Sbjct: 533 CGFNPDSVTFLSVLAACSH 551


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 249/674 (36%), Positives = 387/674 (57%), Gaps = 82/674 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKM-------------------------------PLR 88
           F+ N +L  YAK+G++  AR+LF++M                               P R
Sbjct: 131 FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPAR 190

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +II+W ++++ +A+ G ++  R  FD+MP R  VS+N   + +A K   +EAL +F +M 
Sbjct: 191 NIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQML 250

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P D T V  +++C+ + D      I   I   ++  N FV+ AL DM+AK G ++
Sbjct: 251 EEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLE 310

Query: 209 KARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            AR +FD + + RN V+WN+MIS Y +                                 
Sbjct: 311 IARNIFDELGSQRNAVTWNIMISAYTR--------------------------------- 337

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSI 326
              G++  A  LF  + ++D V W +MI GY QNG+   ++ LF EM+S  D++PD+ +I
Sbjct: 338 --VGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTI 395

Query: 327 SSVVSSCAKLASL----YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           +SV+S+C  + +L    +   +V  K + LG+       ++LI MY KCG   DA  +F 
Sbjct: 396 ASVLSACGHIGALKLSYWVLDIVREKNIKLGISG----FNSLIFMYSKCGSVADAHRIFQ 451

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M TR+VVS+N++I+G+A NG   EA+ L   + +E ++PD  T++ VL+AC HA L   
Sbjct: 452 TMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNE 511

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+N F SI A     P++DHYACM++LLGR+ ++D+A  LI+S+P KP++ ++ +LL+  
Sbjct: 512 GKNVFKSIQA-----PTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGSLLNAS 566

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +   +  GE+AA  LFELEP N G Y++LSN+YA+ GRWEDV  +R  MK   +KK   
Sbjct: 567 RIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGLKKSVG 626

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SW+E   +VHKF   DR+H +++ IY+ L++L +K++  GF  +    L D +EEEK +
Sbjct: 627 MSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEEEEKEE 686

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLA+ + L+    G T IR++KN+R+C DCH  +K  S + GR I++RD+NRF
Sbjct: 687 MLGTHSEKLAICFALLISEVGTT-IRVVKNLRICLDCHTAIKMISKLEGREIVVRDNNRF 745

Query: 683 HHFVGGNCSCKDNW 696
           H F  G CSC D W
Sbjct: 746 HCFSEGMCSCHDYW 759



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/493 (25%), Positives = 227/493 (46%), Gaps = 61/493 (12%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F   P  D+  Y+  +  ++  G   + + +F         P  + ++  +      L
Sbjct: 55  SIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-----L 109

Query: 171 DLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             + G   H  ++ +G++  + F+RNA+ DMYAK G++D AR LF++M  R L  WN MI
Sbjct: 110 AGKSGNLFHAYVLKLGHIDDH-FIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMI 168

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           SG  K+G   + + LF  M    +    +T ++++    + G ++ A R F  + E+  V
Sbjct: 169 SGCWKSGNETEAVVLFNMMPARNI----ITWTSMVTGYAKMGDLESARRYFDEMPERSVV 224

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG----QVV 345
            W  M   Y Q    ++AL LF++ML E + PD  +    +SSC+ +          +++
Sbjct: 225 SWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMI 284

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA---------------WTV---------- 380
             K +VL    +  V +AL+DM+ K G  + A               W +          
Sbjct: 285 DQKHIVL----NSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGK 340

Query: 381 -------FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLS 432
                  F+ MP R+VVSWNSMI GYAQNG+   ++ L+ +++   +++PD  T  SVLS
Sbjct: 341 LSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLS 400

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H    +      D I     I   +  +  +I +  +   V  A  + +++  + + 
Sbjct: 401 ACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTR-DV 458

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP----YIMLSNMYAACGRWEDVASI 548
           + ++TL+S  A  G   HG+ A + +  +E     P    YI +    +  G   +  ++
Sbjct: 459 VSFNTLISGFAANG---HGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNV 515

Query: 549 RSSMKSKNVKKFA 561
             S+++  V  +A
Sbjct: 516 FKSIQAPTVDHYA 528



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 155/308 (50%), Gaps = 13/308 (4%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRL-----QSHMDLNFYEPNTTFLHNRLLHF 68
           +   G    +  +   +  C+ + D  LA  +     Q H+ LN      +F+   LL  
Sbjct: 249 MLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLN------SFVKTALLDM 302

Query: 69  YAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           +AK G L  AR++FD++   R+ ++WN ++SA+ R G +   R LFD MP RD VS+N+ 
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 128 IAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
           IAG+A  G S  ++++F  M      +P + T  S L+AC  +  L+    +   +   N
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           +   +   N+L  MY+K G +  A  +F  M  R++VS+N +ISG+  NG  K+ I L  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
            M+  G+ PD VT   +L AC   G +++   +F  I+      +  M+    + G+ ++
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYACMVDLLGRAGELDE 542

Query: 307 ALILFNEM 314
           A +L   M
Sbjct: 543 AKMLIQSM 550



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/391 (21%), Positives = 161/391 (41%), Gaps = 81/391 (20%)

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL----TDMYAKGGEIDKARWLFDRMNNRNL 222
           +++ ++R+ +Q HG +V  +L  + +  + L    T ++A    +D    +F    + + 
Sbjct: 9   SKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDS---IFTSSPSPDA 65

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP--------------------------- 255
             ++ M+  Y + G   + + LF+    L L P                           
Sbjct: 66  SVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLG 125

Query: 256 ---DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
              D    + IL    + G++D A  LF  + E+    W +MI G  ++G E +A++LFN
Sbjct: 126 HIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFN 185

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M + ++                                       +  ++++  Y K G
Sbjct: 186 MMPARNI---------------------------------------ITWTSMVTGYAKMG 206

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A   F+ MP R+VVSWN+M + YAQ     EAL L+ ++L+E + PD  T+V  +S
Sbjct: 207 DLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTIS 266

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           +C          +    I   H +  S    A ++++  +  +++ A ++   L  + N+
Sbjct: 267 SCSSIGDPTLADSILRMIDQKHIVLNSFVKTA-LLDMHAKFGNLEIARNIFDELGSQRNA 325

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + W+ ++S     G +      AR LF+  P
Sbjct: 326 VTWNIMISAYTRVGKLS----LARELFDNMP 352


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 41/711 (5%)

Query: 25   AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
             Y  L+   ++    E A  L   M L+  EP++  L + ++   A  G LF  + L   
Sbjct: 356  TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA-DGTLFRGQQLHAY 414

Query: 85   MPLRDIISWN----ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
                   S N    ALL+ +A+   ++     F +  + + V +N  +  +      R +
Sbjct: 415  TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474

Query: 141  LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
             ++F +MQ +   P  YT+ S L  C +L DL  G+QIH +I+  N   N +V + L DM
Sbjct: 475  FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 534

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            YAK G++D A  +  R   +++VSW  MI+GY +     K +  F++M   G+  DEV +
Sbjct: 535  YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 594

Query: 261  SNILGAC--------------------------FQT---------GRIDDAGRLFHVIKE 285
            +N + AC                          FQ          G+I+++   F   + 
Sbjct: 595  TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 654

Query: 286  KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
             DN+ W  ++ G+ Q+G  E+AL +F  M  E +  + F+  S V + ++ A++  G+ V
Sbjct: 655  GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 714

Query: 346  HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
            H      G D +  V +ALI MY KCG   DA   F  + T+N VSWN++IN Y+++G  
Sbjct: 715  HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFG 774

Query: 406  LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             EAL  +D+++  N++P+  T V VLSAC H  L ++G  +F+S+++ +G++P  +HY C
Sbjct: 775  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 834

Query: 466  MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
            ++++L R+  + +A + I+ +P KP++L+W TLLS C +  +++ GE AA HL ELEP +
Sbjct: 835  VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 894

Query: 526  AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            +  Y++LSN+YA   +W+     R  MK K VKK    SWIE+ N +H F   D+ HP  
Sbjct: 895  SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 954

Query: 586  EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
            + I+E    L K+  E G+  +   +L++ Q E+K   I  HSEKLA+++ L+  P  V 
Sbjct: 955  DEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATV- 1013

Query: 646  PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PI +MKN+RVC DCH ++KF S +  R II+RD+ RFHHF GG CSCKD W
Sbjct: 1014 PINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 40/467 (8%)

Query: 77  YARDLFDKMPLRD-IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           +AR L+    LRD  +  N L+  ++R+G V   R +FD + ++D  S+   I+G +   
Sbjct: 210 HARILYQG--LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+++F  M      PT Y   S L+AC ++  L  G+Q+HG ++      + +V N
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 327

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL  +Y   G +  A  +F  M+ R+ V++N +I+G  + G  +K ++LF+ M L GL P
Sbjct: 328 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 387

Query: 256 DEVTVSNILGACFQTGR-----------------------------------IDDAGRLF 280
           D  T+++++ AC   G                                    I+ A   F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
              + ++ V W  M+V Y       ++  +F +M  E++ P++++  S++ +C +L  L 
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H + +      +  V S LIDMY K G  D AW +      ++VVSW +MI GY 
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           Q   D +AL  + ++L   ++ D     + +SAC      + GQ    + + V G +  L
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ-QIHAQACVSGFSSDL 626

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
                ++ L  R   ++++  L        +++ W+ L+S     G+
Sbjct: 627 PFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGN 672



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 194/427 (45%), Gaps = 42/427 (9%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC-AQLL 170
           +FD+MP R   ++N  I   A++    E   +F RM  +   P + T    L AC    +
Sbjct: 142 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 201

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
                +QIH +I+   L  +  V N L D+Y++ G +D AR +FD +  ++  SW  MIS
Sbjct: 202 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 261

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------- 267
           G  KN    + I LF +M +LG+ P     S++L AC                       
Sbjct: 262 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 321

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                       F  G +  A  +F  + ++D V + T+I G +Q G  E A+ LF  M 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            + + PD  +++S+V +C+   +L+ GQ +H     LG   +  +  AL+++Y KC   +
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A   F      NVV WN M+  Y        +  ++ ++  E + P+ +T+ S+L  C+
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSL 493
                E G+     I   +     L+ Y C  +I++  +   +D A D++     K + +
Sbjct: 502 RLGDLELGEQIHSQIIKTNF---QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVV 557

Query: 494 IWSTLLS 500
            W+T+++
Sbjct: 558 SWTTMIA 564



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 203/475 (42%), Gaps = 76/475 (16%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+++H +I+   L  N  +   L D Y   G++  A  +FD M  R + +WN MI  
Sbjct: 101 LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
                   +   LF  M    + P+E T S +L AC                        
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G +D A R+F  ++ KD+  W  MI G ++N  E +A+ LF +M 
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 280

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              + P  ++ SSV+S+C K+ SL  G+ +HG  + LG   D  V +AL+ +Y   G   
Sbjct: 281 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 340

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+ M  R+ V++N++ING +Q G   +A+ L+ ++  + L+PDS T  S++ AC 
Sbjct: 341 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 400

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD-------------- 481
                 RGQ    + +   G   +      ++NL  + +D++ A+D              
Sbjct: 401 ADGTLFRGQ-QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 459

Query: 482 -------LIKSLPHK-------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
                  L+  L +              PN   + ++L  C   GD++ GE     + + 
Sbjct: 460 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 519

Query: 522 E-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF----AAYSWIEIDNK 571
              +NA    +L +MYA  G+ +    I      K+V  +    A Y+    D+K
Sbjct: 520 NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 574



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 148/318 (46%), Gaps = 26/318 (8%)

Query: 219 NRNLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
           N   + W  ++ G LK NG   +   L  ++  LGL+ +      +       G +  A 
Sbjct: 83  NHQTLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           ++F  + E+    W  MI          +   LF  M+SE+V P++ + S V+ +C   +
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 338 SLYH-GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             +   + +H + +  G+ D  +V + LID+Y + G  D A  VF+ +  ++  SW +MI
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 260

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           +G ++N  + EA+ L+  +    + P  + F SVLSAC   +  E G+        +HG+
Sbjct: 261 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-------LHGL 313

Query: 457 TPSL----DHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              L    D Y C  +++L     ++  A  +  ++  + +++ ++TL++  +  G   +
Sbjct: 314 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCG---Y 369

Query: 511 GEMAAR-----HLFELEP 523
           GE A       HL  LEP
Sbjct: 370 GEKAMELFKRMHLDGLEP 387



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 319 VRPDKFSISSVVSSCAKL-ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +RP+  ++  ++  C K   SL  G+ +H + + LG+D +  +S  L D Y   G    A
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
           + VF+ MP R + +WN MI   A      E   L+ +++ EN+ P+  TF  VL AC   
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC--- 196

Query: 438 DLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
                G   FD +  +H      G+  S      +I+L  R+  VD A  +   L  K +
Sbjct: 197 ---RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 253

Query: 492 SLIWSTLLS 500
           S  W  ++S
Sbjct: 254 S-SWVAMIS 261


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 263/711 (36%), Positives = 381/711 (53%), Gaps = 105/711 (14%)

Query: 57  NTTFLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           NT F  ++L+ F A S  G L YA  LF+ +   +   WN ++  ++ S S         
Sbjct: 62  NTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSS--------- 112

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
             P+                     A+  + RM     EP  YT    L +CA++   + 
Sbjct: 113 --PVG--------------------AIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQE 150

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI--------------------------- 207
           GKQIHG ++   L  + FV  +L +MYA+ GE+                           
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 208 ----DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
               D AR LF+ +  R+ VSWN MI+GY ++G+ ++ +  FQEM+   + P+E T+  +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 264 LGACFQTGRI-----------------------------------DDAGRLFHVIKEKDN 288
           L AC Q+G +                                   D A  LF  I EKD 
Sbjct: 271 LSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDI 330

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
           + W  MI GY+     ++AL LF +M   +V P+  +  S++ +CA L +L  G+ +H  
Sbjct: 331 ISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAY 390

Query: 348 -KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                LG+ +  L +S LIDMY KCG  + A  VF  M  +++ SWN+MI+G A +G   
Sbjct: 391 IDKKFLGLTNTSLWTS-LIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHAN 449

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
            AL L+ ++  E  +PD  TFV VLSAC HA L E G+  F S+   + I+P L HY CM
Sbjct: 450 MALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCM 509

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           I+LLGR+   D+A  L+K++  KP+  IW +LL  C + G+++ GE AA+HLFELEP N 
Sbjct: 510 IDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENP 569

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
           G Y++LSN+YA  GRW+DVA IR+ +  K +KK    S IE+D+ VH+F+  D+ H +++
Sbjct: 570 GAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQ 629

Query: 587 IIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVT 645
            IY+ L ++ + L++AG  P+T  VL+D  EE K  S+ +HSEKLA+A+ LI  KP   T
Sbjct: 630 DIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPE--T 687

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            IRI+KN+RVCG+CH  +K  S I  R II RD NRFHHF  G+CSC D W
Sbjct: 688 TIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 135/449 (30%), Positives = 218/449 (48%), Gaps = 50/449 (11%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C +V   +  K++  H+ L     +  F+H  L++ YA++G+L YA  +F K  LR
Sbjct: 138 LLKSCAKVGATQEGKQIHGHV-LKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLR 196

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D +S+ AL++ +   G + D R LF+++P+RD+VS+N  IAG+A  G   EAL  F  M+
Sbjct: 197 DAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMK 256

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P + T V+ L+ACAQ   L  G  +   I    LG N+ + NAL DMY+K G++D
Sbjct: 257 RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLD 316

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
           KAR LF+ +  ++++SWN+MI GY      K+ + LF++MQ   + P++VT  +IL AC 
Sbjct: 317 KARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACA 376

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G I+ A ++F  +K K    W 
Sbjct: 377 YLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWN 436

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI G   +G    AL LF +M  E   PD  +   V+S+C+     + G V  G+    
Sbjct: 437 AMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACS-----HAGLVELGRQCFS 491

Query: 353 GVDDDLLVSSAL------IDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQ- 404
            + +D  +S  L      ID+  + G+ D+A  +  NM    +   W S++     +G  
Sbjct: 492 SMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNV 551

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSA 433
           +L   A       E   P ++  +S + A
Sbjct: 552 ELGEFAAKHLFELEPENPGAYVLLSNIYA 580



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 86/425 (20%)

Query: 252 GLNPDEVTVSNILGACFQT--GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GL+  +  +S ++  C  +  G +  A  LF  I++ +   W TMI G + +     A+ 
Sbjct: 59  GLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAID 118

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            +  ML   V P+ ++   ++ SCAK+ +   G+ +HG  + LG++ D  V ++LI+MY 
Sbjct: 119 FYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYA 178

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNS-------------------------------MING 398
           + G    A  VF+    R+ VS+ +                               MI G
Sbjct: 179 QNGELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAG 238

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           YAQ+G+  EALA + ++ + N+ P+  T V+VLSAC  +   E G N   S    HG+  
Sbjct: 239 YAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELG-NWVRSWIEDHGLGS 297

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHK----------------------------- 489
           +L     +I++  +  D+DKA DL + +  K                             
Sbjct: 298 NLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQ 357

Query: 490 -----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRW 542
                PN + + ++L  CA  G +  G+    ++ +  L   N   +  L +MYA CG  
Sbjct: 358 QSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNI 417

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           E    + + MK K++      SW       +  +S    H    +  E    L +++++ 
Sbjct: 418 EAAKQVFAGMKPKSLG-----SW-------NAMISGLAMHGHANMALE----LFRQMRDE 461

Query: 603 GFSPN 607
           GF P+
Sbjct: 462 GFEPD 466



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/264 (22%), Positives = 108/264 (40%), Gaps = 36/264 (13%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +  ++  C  +  ++L K + +++D  F     T L   L+  YAK G +  A+ +F  M
Sbjct: 368 FVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGM 427

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             + + SWNA+                               I+G A  G +  AL++F 
Sbjct: 428 KPKSLGSWNAM-------------------------------ISGLAMHGHANMALELFR 456

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKG 204
           +M+ + FEP D T V  L+AC+    +  G+Q    +V   ++   +     + D+  + 
Sbjct: 457 QMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRA 516

Query: 205 GEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G  D+A  L   M  + +   W  ++     +G  +  +  F    L  L P+      +
Sbjct: 517 GLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVE--LGEFAAKHLFELEPENPGAYVL 574

Query: 264 LGACFQT-GRIDDAGRLFHVIKEK 286
           L   + T GR DD  R+   + +K
Sbjct: 575 LSNIYATAGRWDDVARIRTKLNDK 598



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 111/234 (47%), Gaps = 14/234 (5%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC---GVTDDAWTVFNMM 384
           +++S+C    +L   + +H + +  G+ +     S LI+ +C     G    A  +F  +
Sbjct: 37  TLLSTCKSFQNL---KQIHSQIIKTGLHNTQFALSKLIE-FCAISPFGNLSYALLLFESI 92

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
              N   WN+MI G + +   + A+  Y ++L   ++P+S+TF  +L +C      + G+
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                +  + G+      +  +IN+  ++ ++  A +L+ S     +++ ++ L++   +
Sbjct: 153 QIHGHVLKL-GLESDPFVHTSLINMYAQNGELGYA-ELVFSKSSLRDAVSFTALITGYTL 210

Query: 505 KGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           +G +      AR LFE  P+ +A  +  +   YA  GR+E+  +    MK  NV
Sbjct: 211 RGCLDD----ARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/644 (37%), Positives = 376/644 (58%), Gaps = 37/644 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D     AL+ A++  G+V   R +FD +  +D VS+   +A +A      ++L +F +M+
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              + P ++T  +AL +C  L   + GK +HG  +      +++V  AL ++Y K GEI 
Sbjct: 198 IMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIA 257

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC 267
           +A+  F+ M   +L+ W+LMIS Y ++ + K+ ++LF  M Q   + P+  T +++L AC
Sbjct: 258 EAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317

Query: 268 F-----------------------------------QTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G I+++ +LF    EK+ V W 
Sbjct: 318 ASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+IVGY Q G  E AL LF+ ML  D++P + + SSV+ + A L +L  G+ +H   +  
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
             + D +V+++LIDMY KCG  DDA   F+ M  ++ VSWN++I GY+ +G  +EAL L+
Sbjct: 438 MYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLF 497

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           D + Q N KP+  TFV VLSAC +A L ++G+ HF S+   +GI P ++HY CM+ LLGR
Sbjct: 498 DMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGR 557

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S   D+AV LI  +P +P+ ++W  LL  C +  ++  G++ A+ + E+EP +   +++L
Sbjct: 558 SGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLL 617

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYA   RW++VA +R +MK K VKK    SW+E    VH F   D +HP  ++I+  L
Sbjct: 618 SNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAML 677

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L KK ++AG+ P+  +VL D +++EK + +  HSE+LALA+ LI+ P G + IRI+KN
Sbjct: 678 EWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCS-IRIIKN 736

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH  +K  S I+ R I++RD NRFHHF  G CSC D W
Sbjct: 737 LRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/507 (25%), Positives = 233/507 (45%), Gaps = 72/507 (14%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + N LL+ +   G ++D   LFD+MP+ ++VS+ T   GF+     + A ++  R+ 
Sbjct: 37  DLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLF 96

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ +E   +   + L     +        +H  +       + FV  AL D Y+  G +D
Sbjct: 97  REGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVD 156

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            AR +FD +  +++VSW  M++ Y +N   +  + LF +M+++G  P+  T+S  L +C 
Sbjct: 157 AARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCN 216

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              ++G I +A + F  + + D + W+ 
Sbjct: 217 GLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSL 276

Query: 294 MIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           MI  Y Q+ K ++AL LF  M  S  V P+ F+ +SV+ +CA L  L  G  +H   + +
Sbjct: 277 MISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV 336

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+D ++ VS+AL+D+Y KCG  +++  +F     +N V+WN++I GY Q G   +AL L+
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLF 396

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHG----ITPSL-DHYA-- 464
             +L  +++P   T+ SVL A       E G Q H  +I  ++     +  SL D YA  
Sbjct: 397 SNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKC 456

Query: 465 -------------------------CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
                                    C  ++ G   +     D+++    KPN L +  +L
Sbjct: 457 GRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVL 516

Query: 500 SVCAMKGDIKHGEMAARHLFE---LEP 523
           S C+  G +  G    + + +   +EP
Sbjct: 517 SACSNAGLLDKGRAHFKSMLQDYGIEP 543



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 172/373 (46%), Gaps = 38/373 (10%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           D   GK +H  I+      ++F +N L + Y   G ++ A  LFD M   N VS+  +  
Sbjct: 18  DPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQ 77

Query: 231 GYLKNGQ-----------------------------------PKKCIDLFQEMQLLGLNP 255
           G+ ++ Q                                      C+ +   +  LG   
Sbjct: 78  GFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQA 137

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           D    + ++ A    G +D A ++F  I  KD V WT M+  Y +N   ED+L+LF +M 
Sbjct: 138 DAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMR 197

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
               RP+ F+IS+ + SC  L +   G+ VHG A+ +  D DL V  AL+++Y K G   
Sbjct: 198 IMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIA 257

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSAC 434
           +A   F  MP  +++ W+ MI+ YAQ+ +  EAL L+ ++ Q + + P++FTF SVL AC
Sbjct: 258 EAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
               L   G N   S     G+  ++     ++++  +  +++ +V L      K N + 
Sbjct: 318 ASLVLLNLG-NQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEK-NEVA 375

Query: 495 WSTLLSVCAMKGD 507
           W+T++      GD
Sbjct: 376 WNTIIVGYVQLGD 388



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/283 (23%), Positives = 130/283 (45%), Gaps = 14/283 (4%)

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           S+  M+   ++N  P     L   +   G + D    + +L      G ++DA +LF  +
Sbjct: 5   SYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEM 64

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              + V + T+  G++++ + + A  L   +  E    ++F  ++++     +       
Sbjct: 65  PLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCL 124

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            VH     LG   D  V +ALID Y  CG  D A  VF+ +  +++VSW  M+  YA+N 
Sbjct: 125 SVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENY 184

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--- 460
              ++L L+ ++     +P++FT  + L +C   + F+ G+       +VHG    +   
Sbjct: 185 CHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGK-------SVHGCALKVCYD 237

Query: 461 -DHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            D Y    ++ L  +S ++ +A    + +P K + + WS ++S
Sbjct: 238 RDLYVGIALLELYTKSGEIAEAQQFFEEMP-KDDLIPWSLMIS 279


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/686 (37%), Positives = 380/686 (55%), Gaps = 86/686 (12%)

Query: 89  DIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D++  N L+S +     S  D R++FD + IR+S+S+N+ I+ ++ +G +  A  +FS M
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 295

Query: 148 QKD----RFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMY 201
           QK+     F+P D ++  S L         R+G+++H  ++   L  N V + N L +MY
Sbjct: 296 QKEGLGFSFKPNDAFSEFSVLEE-----GRRKGREVHAHVIRTGLNDNKVAIGNGLVNMY 350

Query: 202 AKGGEI-------------DKARW------------------LFDRMNNRNLVSWNLMIS 230
           AK G I             D   W                  +F  M   + VSWN +I 
Sbjct: 351 AKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVI- 409

Query: 231 GYLKNGQPK--KCIDLFQEMQLLGLNPDEVTVSNILGA---------------------- 266
           G L + +    + +  F +M   G     VT  NIL A                      
Sbjct: 410 GALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL 469

Query: 267 ------------CF-QTGRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILFN 312
                       C+ + G +++  ++F  + E +D V W +MI GY  N     A+ L  
Sbjct: 470 SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVW 529

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M+ +  R D F+ ++++S+CA +A+L  G  VH   +   ++ D++V SAL+DMY KCG
Sbjct: 530 FMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCG 589

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             D A   F +MP RNV SWNSMI+GYA++G   +AL L+ +++ +   PD  TFV VLS
Sbjct: 590 RIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLS 649

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H    E G  HF S+S V+ ++P ++H++CM++LLGR+  +D+  D I S+P KPN 
Sbjct: 650 ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 709

Query: 493 LIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           LIW T+L  C  A   + + G  AA  L ELEP NA  Y++L+NMYA+  +WEDVA  R+
Sbjct: 710 LIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKART 769

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
           +MK   VKK A  SW+ + + VH FV+ D+ HPE ++IY++L +L +K+++AG+ P TK 
Sbjct: 770 AMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKY 829

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
            L D + E K + + YHSEK+A+A+ L ++     PIRIMKN+RVCGDCH    + S I+
Sbjct: 830 ALFDLELENKEELLSYHSEKIAVAFVLTRQS--ALPIRIMKNLRVCGDCHSAFGYISKIV 887

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR I+LRDSNRFHHF  G CSC D W
Sbjct: 888 GRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 145/526 (27%), Positives = 232/526 (44%), Gaps = 92/526 (17%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + R G +   + LFD+M  R+ V++   I+G+   G   EA   F  M +  F 
Sbjct: 138 NTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFI 197

Query: 154 PTDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG-GEIDKA 210
           P  Y   SAL AC +      + G QIHG I     G +V V N L  MY       + A
Sbjct: 198 PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDA 257

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ--------------------- 249
           R +FD +  RN +SWN +IS Y + G      DLF  MQ                     
Sbjct: 258 RSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLE 317

Query: 250 --------------LLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                           GLN ++V + N L   + ++G I DA  +F ++ EKD+V W ++
Sbjct: 318 EGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSL 377

Query: 295 IVGYTQNGKEEDALILFNEM---------------------LSEDVRP-----------D 322
           I G  QN   EDA  +F+ M                     +S+ V+             
Sbjct: 378 ISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLS 437

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF- 381
           + +  +++S+ + L+       +H   +   + DD  + +AL+  Y KCG  ++   +F 
Sbjct: 438 RVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFA 497

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
            M  TR+ VSWNSMI+GY  N    +A+ L   ++Q+  + DSFTF ++LSAC      E
Sbjct: 498 RMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLE 557

Query: 442 RGQNHFDSISAVH--GITPSLDH----YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           RG         VH  GI   L+      + ++++  +   +D A    + +P + N   W
Sbjct: 558 RGME-------VHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLR-NVYSW 609

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYAAC 539
           ++++S  A  G   HGE A + LF    ++  P  ++    + +AC
Sbjct: 610 NSMISGYARHG---HGEKALK-LFTRMMLDGQPPDHVTFVGVLSAC 651



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 210/452 (46%), Gaps = 48/452 (10%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA 101
            + + +H+       N   + N L++ YAKSG +  A  +F+ M  +D +SWN+L+S   
Sbjct: 323 GREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS-REALQVFSRMQKDRFEPTDYTHV 160
           ++   +D   +F  MP  D VS+N+ I   ++   S  +A++ F +M +  +  +  T +
Sbjct: 383 QNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 442

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-N 219
           + L+A + L       QIH  ++   L  +  + NAL   Y K GE+++   +F RM+  
Sbjct: 443 NILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSET 502

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------- 268
           R+ VSWN MISGY+ N    K +DL   M   G   D  T + IL AC            
Sbjct: 503 RDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV 562

Query: 269 ------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                   + GRID A R F ++  ++   W +MI GY ++G  
Sbjct: 563 HACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHG 622

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGVDDDLLVSS 362
           E AL LF  M+ +   PD  +   V+S+C+ +  +  G   H K++  V  +   +   S
Sbjct: 623 EKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEG-FEHFKSMSEVYRLSPRVEHFS 681

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQ-NGQDLEALALYDKLLQENL 420
            ++D+  + G  D+     N MP + NV+ W +++    + NG++ E      ++L E L
Sbjct: 682 CMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLE-L 740

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           +P      + ++  L A+++  G+   D   A
Sbjct: 741 EPQ-----NAVNYVLLANMYASGEKWEDVAKA 767



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 49/282 (17%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            +++H + +     GN+F+ N L ++Y + G++  A+ LFD M+NRNLV+W  +ISGY +
Sbjct: 118 ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 177

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG----------------------- 271
           NG+P +    F++M   G  P+     + L AC ++G                       
Sbjct: 178 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 237

Query: 272 ---------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                            +DA  +F  I  ++++ W ++I  Y++ G    A  LF+ M  
Sbjct: 238 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 297

Query: 317 EDV----RP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD-LLVSSALIDMYCK 370
           E +    +P D FS  SV+    +      G+ VH   +  G++D+ + + + L++MY K
Sbjct: 298 EGLGFSFKPNDAFSEFSVLEEGRR-----KGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 352

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            G   DA +VF +M  ++ VSWNS+I+G  QN    +A  ++
Sbjct: 353 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMF 394



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 11/169 (6%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +++  G   +L +S+ LI++Y + G    A  +F+ M  RN+V+W  +I+GY QNG+
Sbjct: 121 LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 180

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL---- 460
             EA A +  +++    P+ + F S L AC      E G +       +HG+        
Sbjct: 181 PDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGPSGCKLGVQIHGLISKTRYGS 235

Query: 461 DHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           D   C  +I++ G   D       +       NS+ W++++SV + +GD
Sbjct: 236 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGD 284


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/683 (34%), Positives = 375/683 (54%), Gaps = 45/683 (6%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           +++  Y  N     N+L H +A+  +L   +D +           N +L      GS   
Sbjct: 16  LEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNY---------LLNLILCCALDFGSTNY 66

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
            + +F ++   +   +NT I G  +K    +A+ ++  M+   F P ++T    L ACA+
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
            LD+R G +IH  +V      +VFV+ +L  +Y K    D A  +FD + ++N+VSW  +
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------- 267
           I+GY+ +G  ++ I  F+++  +GL PD  ++  +L AC                     
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 268 --------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G ++ A  +F  + EKD V W+TMI GY  NG  + AL LF +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M SE+++PD +++  V+S+CA L +L  G              + ++ +ALIDMY KCG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
              AW +F  M  ++ V WN+M+ G + NG      +L+  + +  ++PD  TF+ +L  
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C H      G+  F+++  V  +TPS++HY CM++LLGR+  +++A  LI ++P KPN++
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +W  LL  C +  D    E   + L ELEP N+G Y+ LSN+Y+   RWE+   IRS+MK
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + ++K  A SWIEID  VH+F+  D++H  +E IY +L +L ++L+  G  P T+ VL 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +EEEK   + YHSEKLA+A+ LI  P     IR++KN+RVCGDCH  +K  S I  R 
Sbjct: 607 DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHV-IRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD+NRFH F+ G+CSC+D W
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/711 (34%), Positives = 386/711 (54%), Gaps = 41/711 (5%)

Query: 25   AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
             Y  L+   ++    E A  L   M L+  EP++  L + ++   A  G LF  + L   
Sbjct: 316  TYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSA-DGTLFRGQQLHAY 374

Query: 85   MPLRDIISWN----ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
                   S N    ALL+ +A+   ++     F +  + + V +N  +  +      R +
Sbjct: 375  TTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 434

Query: 141  LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
             ++F +MQ +   P  YT+ S L  C +L DL  G+QIH +I+  N   N +V + L DM
Sbjct: 435  FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 494

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            YAK G++D A  +  R   +++VSW  MI+GY +     K +  F++M   G+  DEV +
Sbjct: 495  YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 554

Query: 261  SNILGAC--------------------------FQT---------GRIDDAGRLFHVIKE 285
            +N + AC                          FQ          G+I+++   F   + 
Sbjct: 555  TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 614

Query: 286  KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
             DN+ W  ++ G+ Q+G  E+AL +F  M  E +  + F+  S V + ++ A++  G+ V
Sbjct: 615  GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 674

Query: 346  HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
            H      G D +  V +ALI MY KCG   DA   F  + T+N VSWN++IN Y+++G  
Sbjct: 675  HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFG 734

Query: 406  LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             EAL  +D+++  N++P+  T V VLSAC H  L ++G  +F+S+++ +G++P  +HY C
Sbjct: 735  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 794

Query: 466  MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
            ++++L R+  + +A + I+ +P KP++L+W TLLS C +  +++ GE AA HL ELEP +
Sbjct: 795  VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 854

Query: 526  AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            +  Y++LSN+YA   +W+     R  MK K VKK    SWIE+ N +H F   D+ HP  
Sbjct: 855  SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 914

Query: 586  EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
            + I+E    L K+  E G+  +   +L++ Q E+K   I  HSEKLA+++ L+  P  V 
Sbjct: 915  DEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATV- 973

Query: 646  PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PI +MKN+RVC DCH ++KF S +  R II+RD+ RFHHF GG CSCKD W
Sbjct: 974  PINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 121/467 (25%), Positives = 218/467 (46%), Gaps = 40/467 (8%)

Query: 77  YARDLFDKMPLRD-IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           +AR L+    LRD  +  N L+  ++R+G V   R +FD + ++D  S+   I+G +   
Sbjct: 170 HARILYQG--LRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 227

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+++F  M      PT Y   S L+AC ++  L  G+Q+HG ++      + +V N
Sbjct: 228 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCN 287

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL  +Y   G +  A  +F  M+ R+ V++N +I+G  + G  +K ++LF+ M L GL P
Sbjct: 288 ALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEP 347

Query: 256 DEVTVSNILGACFQTGR-----------------------------------IDDAGRLF 280
           D  T+++++ AC   G                                    I+ A   F
Sbjct: 348 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 407

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
              + ++ V W  M+V Y       ++  +F +M  E++ P++++  S++ +C +L  L 
Sbjct: 408 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 467

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H + +      +  V S LIDMY K G  D AW +      ++VVSW +MI GY 
Sbjct: 468 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 527

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           Q   D +AL  + ++L   ++ D     + +SAC      + GQ    + + V G +  L
Sbjct: 528 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ-QIHAQACVSGFSSDL 586

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
                ++ L  R   ++++  L        +++ W+ L+S     G+
Sbjct: 587 PFQNALVTLYSRCGKIEESY-LAFEQTEAGDNIAWNALVSGFQQSGN 632



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 194/427 (45%), Gaps = 42/427 (9%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC-AQLL 170
           +FD+MP R   ++N  I   A++    E   +F RM  +   P + T    L AC    +
Sbjct: 102 VFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSV 161

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
                +QIH +I+   L  +  V N L D+Y++ G +D AR +FD +  ++  SW  MIS
Sbjct: 162 AFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMIS 221

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------- 267
           G  KN    + I LF +M +LG+ P     S++L AC                       
Sbjct: 222 GLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 281

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                       F  G +  A  +F  + ++D V + T+I G +Q G  E A+ LF  M 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            + + PD  +++S+V +C+   +L+ GQ +H     LG   +  +  AL+++Y KC   +
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A   F      NVV WN M+  Y        +  ++ ++  E + P+ +T+ S+L  C+
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSL 493
                E G+     I   +     L+ Y C  +I++  +   +D A D++     K + +
Sbjct: 462 RLGDLELGEQIHSQIIKTN---FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVV 517

Query: 494 IWSTLLS 500
            W+T+++
Sbjct: 518 SWTTMIA 524



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 203/475 (42%), Gaps = 76/475 (16%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+++H +I+   L  N  +   L D Y   G++  A  +FD M  R + +WN MI  
Sbjct: 61  LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 120

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
                   +   LF  M    + P+E T S +L AC                        
Sbjct: 121 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 180

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G +D A R+F  ++ KD+  W  MI G ++N  E +A+ LF +M 
Sbjct: 181 STVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMY 240

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              + P  ++ SSV+S+C K+ SL  G+ +HG  + LG   D  V +AL+ +Y   G   
Sbjct: 241 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLI 300

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+ M  R+ V++N++ING +Q G   +A+ L+ ++  + L+PDS T  S++ AC 
Sbjct: 301 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACS 360

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD-------------- 481
                 RGQ    + +   G   +      ++NL  + +D++ A+D              
Sbjct: 361 ADGTLFRGQ-QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 419

Query: 482 -------LIKSLPHK-------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
                  L+  L +              PN   + ++L  C   GD++ GE     + + 
Sbjct: 420 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 479

Query: 522 E-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF----AAYSWIEIDNK 571
              +NA    +L +MYA  G+ +    I      K+V  +    A Y+    D+K
Sbjct: 480 NFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 534



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 148/318 (46%), Gaps = 26/318 (8%)

Query: 219 NRNLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
           N   + W  ++ G LK NG   +   L  ++  LGL+ +      +       G +  A 
Sbjct: 43  NHQTLKW--LLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 100

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           ++F  + E+    W  MI          +   LF  M+SE+V P++ + S V+ +C   +
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 338 SLYH-GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             +   + +H + +  G+ D  +V + LID+Y + G  D A  VF+ +  ++  SW +MI
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMI 220

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           +G ++N  + EA+ L+  +    + P  + F SVLSAC   +  E G+        +HG+
Sbjct: 221 SGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQ-------LHGL 273

Query: 457 TPSL----DHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              L    D Y C  +++L     ++  A  +  ++  + +++ ++TL++  +  G   +
Sbjct: 274 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQR-DAVTYNTLINGLSQCG---Y 329

Query: 511 GEMAAR-----HLFELEP 523
           GE A       HL  LEP
Sbjct: 330 GEKAMELFKRMHLDGLEP 347



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 319 VRPDKFSISSVVSSCAKL-ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +RP+  ++  ++  C K   SL  G+ +H + + LG+D +  +S  L D Y   G    A
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
           + VF+ MP R + +WN MI   A      E   L+ +++ EN+ P+  TF  VL AC   
Sbjct: 100 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC--- 156

Query: 438 DLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
                G   FD +  +H      G+  S      +I+L  R+  VD A  +   L  K +
Sbjct: 157 ---RGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 213

Query: 492 SLIWSTLLS 500
           S  W  ++S
Sbjct: 214 S-SWVAMIS 221


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 241/672 (35%), Positives = 370/672 (55%), Gaps = 44/672 (6%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LH  LL    KSG +  + D F  +     +   A  SAH  S +++  R      P R 
Sbjct: 82  LHATLL----KSGAMTTSPDSFHSLLEAAALPAPATSSAHL-SYAIRLFR--LGPHPPRS 134

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIH 179
           + SYN  I  F   G   +AL +F  M  D    P  +T  + + +C+++ DL  G+ + 
Sbjct: 135 ARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQ 194

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
                     + FV N+L  MYA  G++  A  LF  +  + +++WN MI+GY+KNG  K
Sbjct: 195 AYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWK 254

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
           + +++F+ M  +    DEVT+ ++  AC                                
Sbjct: 255 EVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALV 314

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G +D A RLF  +  +D V W+ MI GYTQ+ +  +AL +FNEM   +V P+  
Sbjct: 315 DMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDV 374

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ SV+S+CA L +L  G+ VH       +   +++ +AL+D Y KCG   DA   F  M
Sbjct: 375 TMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESM 434

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           P RN  +W ++I G A NG+  EAL L+  +L+ N++P   TF+ VL AC H  L E G+
Sbjct: 435 PVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGR 494

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            HF S++  +GI P ++HY CM++LLGR+  +D+A   I+++P +PN+++W  LLS C +
Sbjct: 495 RHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTV 554

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             +++ GE A + +  L+P ++G YI+LSN YA+ G+W++ A +R  MK K V+K    S
Sbjct: 555 HKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCS 614

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
            IE++  + +F +ED  HP+   IYE++ ++I+ ++  G+ PNT     D  E EK  S+
Sbjct: 615 LIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSV 674

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            +HSEKLA+A+ L+K   G T IR+ KN+RVC DCH   K  S +  R II+RD NRFHH
Sbjct: 675 SHHSEKLAIAFGLMKSRPGAT-IRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHH 733

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 734 FKDGLCSCNDYW 745



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 190/412 (46%), Gaps = 81/412 (19%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           V  C+R+ D+ + + +Q++     +  +  F+ N L+H YA  G +  A  LF  + ++ 
Sbjct: 178 VKSCSRMCDLSVGRGVQAYAFKRGFMVDQ-FVLNSLIHMYASCGDVVAAHVLFHTVQVKG 236

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +I+WNA+                               IAG+   G  +E +++F  M +
Sbjct: 237 VIAWNAM-------------------------------IAGYVKNGDWKEVVEMFKGMLE 265

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
            R    + T +S   AC +L D   G+ I        +  +  +  AL DMYAK GE+DK
Sbjct: 266 VRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDK 325

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           AR LFDRM++R++V+W+ MISGY ++ + ++ + +F EMQ   +NP++VT+ ++L AC  
Sbjct: 326 ARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAV 385

Query: 268 ---FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTM 294
               +TG+                              I DA + F  +  ++   WT +
Sbjct: 386 LGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTAL 445

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-HGKAVVLG 353
           I G   NG+  +AL LF+ ML  ++ P   +   V+ +C+      HG +V  G+     
Sbjct: 446 IKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACS------HGCLVEEGRRHFTS 499

Query: 354 VDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           +  D  +         ++D+  + G+ D+A+     MP   N V W ++++ 
Sbjct: 500 MTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/647 (35%), Positives = 372/647 (57%), Gaps = 40/647 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D  +  AL+ A+ R G V+D    FD+M  RD  ++N  ++G      + EA+ +F RM 
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +       T  S L  C  L D      +H   V   L   +FV NA+ D+Y K G ++
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           + R +FD M++R+LV+WN +ISG+ + GQ    +++F  M+  G++PD +T+ ++  A  
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 269 QTG------------------------------------RIDDAGRLFHVIKEKDNVCWT 292
           Q G                                    +I+ A R+F  +  +D V W 
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 293 TMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+I GY QNG   +A+ +++ M   E ++P + +  SV+ + + L +L  G  +H  ++ 
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIK 402

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G++ D+ V + +ID+Y KCG  D+A  +F   P R+   WN++I+G   +G   +AL+L
Sbjct: 403 TGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSL 462

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++ QE + PD  TFVS+L+AC HA L ++G+N F+ +   +GI P   HYACM+++ G
Sbjct: 463 FSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFG 522

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +D A D I+++P KP+S IW  LL  C + G+++ G++A+++LFEL+P N G Y++
Sbjct: 523 RAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVL 582

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR--THPETEIIY 589
           +SNMYA  G+W+ V  +RS ++ +N++K   +S IE+   V+ F S ++   HP+ E I 
Sbjct: 583 MSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQ 642

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            EL  L+ K++  G+ P+   VL D +E+EK + +  HSE+LA+A+ +I  P   TP+ I
Sbjct: 643 RELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPP-RTPLHI 701

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+RVCGDCH   K+ S I  R II+RDSNRFHHF  G CSC D W
Sbjct: 702 YKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 196/404 (48%), Gaps = 48/404 (11%)

Query: 177 QIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           Q+H   + +G L G+ F   AL   Y + G +  A   FD M +R++ +WN M+SG  +N
Sbjct: 89  QLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRN 148

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
            +  + + LF  M + G+  D VTVS++L  C                            
Sbjct: 149 ARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVC 208

Query: 269 --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G +++  ++F  +  +D V W ++I G+ Q G+   A+ +F  M    V 
Sbjct: 209 NAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVS 268

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWT 379
           PD  ++ S+ S+ A+   +  G+ VH   V  G D  D++  +A++DMY K    + A  
Sbjct: 269 PDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQR 328

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHAD 438
           +F+ MP R+ VSWN++I GY QNG   EA+ +YD + + E LKP   TFVSVL A  H  
Sbjct: 329 MFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLG 388

Query: 439 LFERGQNHFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
             ++G     ++S   G+  +LD Y   C+I+L  +   +D+A+ L +  P +     W+
Sbjct: 389 ALQQG-TRMHALSIKTGL--NLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTG-PWN 444

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
            ++S   + G   HG  A     +++     P ++   ++ AAC
Sbjct: 445 AVISGVGVHG---HGAKALSLFSQMQQEGISPDHVTFVSLLAAC 485


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/694 (36%), Positives = 372/694 (53%), Gaps = 71/694 (10%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L + + +H+      P  +FL N L++ Y+K   L  A+ +     LR +++W +L+S  
Sbjct: 24  LGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLIS-- 81

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
              G V + R L                           AL  F+ M++D  +P D+T  
Sbjct: 82  ---GCVHNRRFL--------------------------PALLHFTNMRRDNVQPNDFTFP 112

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
               A A +     GKQIHG  + G +  +VFV  +  DMY K G    A  +FD M  R
Sbjct: 113 CVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQR 172

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------ 268
           NL +WN  IS  +++ +    I  F+E   +   P+ +T    L AC             
Sbjct: 173 NLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLH 232

Query: 269 -----------------------QTGRIDDAGRLFHVIKEKDNVC-WTTMIVGYTQNGKE 304
                                  + G I  A  +F+ I  + NV  W +M+    QN +E
Sbjct: 233 AFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEE 292

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E A ++F +   E V P  F ISSV+S+CA+L  L  G+ VH  AV   V+D++ V SAL
Sbjct: 293 ERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIFVGSAL 351

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL--QENLKP 422
           +DMY KCG  ++A  VF+ +P RN+V+WN+MI GYA  G    AL L++++      ++P
Sbjct: 352 VDMYGKCGSIENAEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRP 411

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
              T +S+LS C      ERG   F+S+   +GI P  +H+AC+++LLGRS  VD+A + 
Sbjct: 412 SYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEF 471

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+++  +P   +W  LL  C M G  + G++AA  LFEL+ +++G +++LSNM A+ GRW
Sbjct: 472 IQNMAIQPTISVWGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRW 531

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           E+   +R  MK   +KK   YSWI + N++H F ++D +H     I   L KL   ++EA
Sbjct: 532 EEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEA 591

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P+T L L D ++EEK   + YHSEK+ALA+ LI  P GV PIRI KN+R+CGDCH  
Sbjct: 592 GYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFGLIALPQGV-PIRITKNLRICGDCHSA 650

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +KF S I+GR II+RD++RFH F  G CSCKD W
Sbjct: 651 IKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 36/222 (16%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T+   + ++  C  +  +EL + + +       E N  F+ + L+  Y K G +  A  +
Sbjct: 309 TDFMISSVLSACAELGGLELGRSVHALAVKACVEDNI-FVGSALVDMYGKCGSIENAEQV 367

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F ++P R++++WNA++  +A  G +     LF++M                         
Sbjct: 368 FSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMT------------------------ 403

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG---NLGGNVFVRNALT 198
                +      P+  T +S L+ C+++  + RG QI   + +      G   F    + 
Sbjct: 404 -----LGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPGAEHFA--CVV 456

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPK 239
           D+  + G +D+A      M  +  +S W  ++     +G+ +
Sbjct: 457 DLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTE 498


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 362/642 (56%), Gaps = 43/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL  +A +G   +   +F +MP +D +S+N+ +A F N G S +AL +   M      
Sbjct: 390  NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 449

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T  SAL AC       +G+ +HG +VV  L  N  + NAL  MY K GE+ ++R +
Sbjct: 450  VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 509

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
              +M  R++V+WN +I GY ++  P K +  FQ M++ G++ + +TV ++L AC   G +
Sbjct: 510  LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 569

Query: 274  DDAGR------------------------------------LFHVIKEKDNVCWTTMIVG 297
             + G+                                    LF+ +  ++ + W  M+  
Sbjct: 570  LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 629

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
               +G  E+ L L ++M S  V  D+FS S  +S+ AKLA L  GQ +HG AV LG + D
Sbjct: 630  NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 689

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
              + +A  DMY KCG   +   V  M+P    R++ SWN +I+   ++G   E  A + +
Sbjct: 690  SFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE 746

Query: 415  LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            +L+  +KP   TFVS+L+AC H  L ++G  ++D I+   G+ P+++H  C+I+LLGRS 
Sbjct: 747  MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSG 806

Query: 475  DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
             + +A   I  +P KPN L+W +LL+ C + G++  G  AA +L +LEP +   Y++ SN
Sbjct: 807  RLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSN 866

Query: 535  MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            M+A  GRWEDV ++R  M  KN+KK  A SW+++ +KV  F   DRTHP+T  IY +L  
Sbjct: 867  MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 926

Query: 595  LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            + K ++E+G+  +T   L DT EE+K  ++  HSE+LALAY L+  P G T +RI KN+R
Sbjct: 927  IKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGST-VRIFKNLR 985

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +C DCH   KF S +IGR I+LRD  RFHHF  G CSCKD W
Sbjct: 986  ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 236/461 (51%), Gaps = 15/461 (3%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           ++  N L++ + + G V+  R LFD MP+R+ VS+NT ++G    G   E ++ F +M  
Sbjct: 107 VLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCD 166

Query: 150 DRFEPTDYTHVSALNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              +P+ +   S + AC +   + R G Q+HG +    L  +V+V  A+  +Y   G + 
Sbjct: 167 LGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS 226

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL----------LGLNPDEV 258
            +R +F+ M +RN+VSW  ++ GY   G+P++ ID++++  L           GL     
Sbjct: 227 CSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLA 286

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
             ++++      G +D A  +F  + E+D + W ++   Y QNG  E++  +F+ M    
Sbjct: 287 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 346

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
              +  ++S+++S    +     G+ +HG  V +G D  + V + L+ MY   G + +A 
Sbjct: 347 DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEAN 406

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VF  MPT++++SWNS++  +  +G+ L+AL L   ++      +  TF S L+AC   D
Sbjct: 407 LVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPD 466

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            FE+G+     +  V G+  +      ++++ G+  ++ ++  ++  +P + + + W+ L
Sbjct: 467 FFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNAL 524

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           +   A   D     +AA     +E +++  YI + ++ +AC
Sbjct: 525 IGGYAEDEDPDKA-LAAFQTMRVEGVSSN-YITVVSVLSAC 563



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 122/463 (26%), Positives = 211/463 (45%), Gaps = 68/463 (14%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D+    A+L  +   G V   R +F++MP R+ VS+ + + G+++KG   E + ++  
Sbjct: 206 LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK- 264

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
                                   D   G+QI G++V   L   + V N+L  M    G 
Sbjct: 265 ------------------------DESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGN 300

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D A ++FD+M+ R+ +SWN + + Y +NG  ++   +F  M+      +  TVS +L  
Sbjct: 301 VDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSV 360

Query: 267 CFQT-----------------------------------GRIDDAGRLFHVIKEKDNVCW 291
                                                  GR  +A  +F  +  KD + W
Sbjct: 361 LGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISW 420

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            +++  +  +G+  DAL L   M+S     +  + +S +++C        G+++HG  VV
Sbjct: 421 NSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVV 480

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+  + ++ +AL+ MY K G   ++  V   MP R+VV+WN++I GYA++    +ALA 
Sbjct: 481 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 540

Query: 412 YDKLLQENLKPDSFTFVSVLSAC-LHADLFERGQN-HFDSISAVHGITPSLDHYACMINL 469
           +  +  E +  +  T VSVLSAC L  DL ERG+  H   +SA  G          +I +
Sbjct: 541 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA--GFESDEHVKNSLITM 598

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
             +  D+  + DL   L ++ N + W+ +L+  A  G   HGE
Sbjct: 599 YAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHG---HGE 637



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 172/368 (46%), Gaps = 75/368 (20%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G+ +H   V G +  +V   N L +MY K G +  AR LFD M  RN VSWN M+SG ++
Sbjct: 91  GRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVR 150

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG----------------- 277
            G   + ++ F++M  LG+ P    +++++ AC ++G +   G                 
Sbjct: 151 VGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 210

Query: 278 -------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                              ++F  + +++ V WT+++VGY+  G+ E+ +         D
Sbjct: 211 VSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVI---------D 261

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  D+              SL  G+ + G+ V  G++  L V ++LI M    G  D A 
Sbjct: 262 IYKDE--------------SL--GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYAN 305

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F+ M  R+ +SWNS+   YAQNG   E+  ++  + + + + +S T  ++LS   H D
Sbjct: 306 YIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVD 365

Query: 439 LFERGQNHFDSISAVHGITPSL--DHYACMINLLGRS-SDVDKAVD---LIKSLPHKPNS 492
             + G+        +HG+   +  D   C+ N L R  +   ++V+   + K +P K + 
Sbjct: 366 HQKWGR-------GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DL 417

Query: 493 LIWSTLLS 500
           + W++L++
Sbjct: 418 ISWNSLMA 425


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/683 (34%), Positives = 375/683 (54%), Gaps = 45/683 (6%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           +++  Y  N     N+L H +A+  +L   +D +           N +L      GS   
Sbjct: 16  LEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNY---------LLNLILCCALDFGSTNY 66

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
            + +F ++   +   +NT I G  +K    +A+ ++  M+   F P ++T    L ACA+
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACAR 126

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
            LD+R G +IH  +V      +VFV+ +L  +Y K    D A  +FD + ++N+VSW  +
Sbjct: 127 KLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------- 267
           I+GY+ +G  ++ I  F+++  +GL PD  ++  +L AC                     
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 268 --------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G ++ A  +F  + EKD V W+TMI GY  NG  + AL LF +
Sbjct: 247 GRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQ 306

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M SE+++PD +++  V+S+CA L +L  G              + ++ +ALIDMY KCG 
Sbjct: 307 MQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
              AW +F  M  ++ V WN+M+ G + NG      +L+  + +  ++PD  TF+ +L  
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C H      G+  F+++  V  +TPS++HY CM++LLGR+  +++A  LI ++P KPN++
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +W  LL  C +  D    E   + L ELEP N+G Y+ LSN+Y+   RWE+   IRS+MK
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMK 546

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + ++K  A SWIEID  VH+F+  D++H  +E IY +L +L ++L+  G  P T+ VL 
Sbjct: 547 EQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLF 606

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +EEEK   + YHSEKLA+A+ LI  P     IR++KN+RVCGDCH  +K  S I  R 
Sbjct: 607 DIEEEEKEHFLGYHSEKLAVAFGLIASPPNHV-IRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD+NRFH F+ G+CSC+D W
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 360/644 (55%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  + + G V     +F+KMP  D VS+N  I+G    G    A+++  +M
Sbjct: 235 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +   S L ACA       G+QIHG ++  N   + ++   L DMYAK   +
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 354

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--- 264
           D A  +FD M++R+L+ WN +ISG    G+  +   +F  ++  GL  +  T++ +L   
Sbjct: 355 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKST 414

Query: 265 -------------------GACFQT----GRID---------DAGRLFHVIKEKDNVCWT 292
                              G  F      G ID         DA R+F      D +  T
Sbjct: 415 ASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVT 474

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI   +Q    E A+ LF EML + + PD F +SS++++CA L++   G+ VH   +  
Sbjct: 475 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 534

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
               D    +AL+  Y KCG  +DA   F+ +P R VVSW++MI G AQ+G    AL L+
Sbjct: 535 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 594

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++ E + P+  T  SVL AC HA L +  + +F+S+  + GI  + +HY+CMI+LLGR
Sbjct: 595 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 654

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +D A++L+ S+P + N+ +W  LL    +  D + G++AA  LF LEP  +G +++L
Sbjct: 655 AGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 714

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           +N YA+ G W +VA +R  MK  N+KK  A SW+E+ +KVH F+  D++HP T+ IY +L
Sbjct: 715 ANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKL 774

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   + +AG+ PN  + LHD    EK   + +HSE+LA+A+ L+  P G  PIR+ KN
Sbjct: 775 DELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG-APIRVKKN 833

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH+  KF S+I+ R II+RD NRFHHF  G CSC D W
Sbjct: 834 LRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 235/489 (48%), Gaps = 44/489 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   NAL++ +   G + D R +FD+    R++VS+N  ++ +       +A+QVF  M
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT++     +NAC    ++  G+Q+H  +V      +VF  NAL DMY K G +
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 253

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D A  +F++M + ++VSWN +ISG + NG   + I+L  +M+  GL P+   +S+IL AC
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 313

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                F  GR                              +DDA ++F  +  +D + W 
Sbjct: 314 AGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I G +  G+ ++A  +F  +  E +  ++ ++++V+ S A L +    + VH  A  +
Sbjct: 374 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  V + LID Y KC    DA  VF    + ++++  SMI   +Q      A+ L+
Sbjct: 434 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 493

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L++ L+PD F   S+L+AC     +E+G+     +     ++ +    A ++    +
Sbjct: 494 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAK 552

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
              ++ A     SLP +   + WS ++   A  G   HG+ A      +  E IN   +I
Sbjct: 553 CGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHG---HGKRALELFGRMVDEGINPN-HI 607

Query: 531 MLSNMYAAC 539
            ++++  AC
Sbjct: 608 TMTSVLCAC 616



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 243/543 (44%), Gaps = 81/543 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+S +++       R +FD++P    VS+++ +  ++N G  R A+Q F  M+ +   
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++     L     + D + G Q+H   +    G +VFV NAL  MY   G +D AR +
Sbjct: 101 CNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRV 157

Query: 214 FDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           FD   + RN VSWN ++S Y+KN Q    I +F EM   G+ P E   S ++ AC     
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + GR+D A  +F  + + D V W  +I G
Sbjct: 218 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG 277

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              NG +  A+ L  +M S  + P+ F +SS++ +CA   +   G+ +HG  +    D D
Sbjct: 278 CVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSD 337

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             +   L+DMY K    DDA  VF+ M  R+++ WN++I+G +  G+  EA +++  L +
Sbjct: 338 DYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRK 397

Query: 418 ENLKPDSFTFVSVL--SACLHADLFERGQNH---------FDSISAVHGITPSLDHYAC- 465
           E L  +  T  +VL  +A L A    R Q H         FD+   V+G+  S    +C 
Sbjct: 398 EGLGVNRTTLAAVLKSTASLEAASATR-QVHALAEKIGFIFDA-HVVNGLIDSYWKCSCL 455

Query: 466 --------------------MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVC 502
                               MI  L +    + A+ L   +  K   P+  + S+LL+ C
Sbjct: 456 SDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 503 AMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           A     + G+    HL + + ++   AG  ++ +  YA CG  ED     SS+  + V  
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVS 573

Query: 560 FAA 562
           ++A
Sbjct: 574 WSA 576



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 174/359 (48%), Gaps = 49/359 (13%)

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           +RN L   Y+K      AR +FD + +   VSW+ +++ Y  NG P+  I  F  M+  G
Sbjct: 39  LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEG 98

Query: 253 LN-------------PD------------------EVTVSNILGACFQT-GRIDDAGRLF 280
           +              PD                  +V V+N L A +   G +DDA R+F
Sbjct: 99  VCCNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 158

Query: 281 -HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
                E++ V W  ++  Y +N +  DA+ +F EM+   ++P +F  S VV++C    ++
Sbjct: 159 DEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNI 218

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ VH   V +G + D+  ++AL+DMY K G  D A  +F  MP  +VVSWN++I+G 
Sbjct: 219 DAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGC 278

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI--- 456
             NG D  A+ L  ++    L P+ F   S+L AC  A  F+ G+        +HG    
Sbjct: 279 VLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ-------IHGFMIK 331

Query: 457 -TPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
                D Y    ++++  ++  +D A+ +   + H+ + ++W+ L+S C+  G  +H E
Sbjct: 332 ANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALISGCSHGG--RHDE 387


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/644 (36%), Positives = 360/644 (55%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  + + G V     +F+KMP  D VS+N  I+G    G    A+++  +M
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +     P  +   S L ACA       G+QIHG ++  N   + ++   L DMYAK   +
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 261

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--- 264
           D A  +FD M++R+L+ WN +ISG    G+  +   +F  ++  GL  +  T++ +L   
Sbjct: 262 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKST 321

Query: 265 -------------------GACFQT----GRID---------DAGRLFHVIKEKDNVCWT 292
                              G  F      G ID         DA R+F      D +  T
Sbjct: 322 ASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVT 381

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI   +Q    E A+ LF EML + + PD F +SS++++CA L++   G+ VH   +  
Sbjct: 382 SMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKR 441

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
               D    +AL+  Y KCG  +DA   F+ +P R VVSW++MI G AQ+G    AL L+
Sbjct: 442 QFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELF 501

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++ E + P+  T  SVL AC HA L +  + +F+S+  + GI  + +HY+CMI+LLGR
Sbjct: 502 GRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGR 561

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +D A++L+ S+P + N+ +W  LL    +  D + G++AA  LF LEP  +G +++L
Sbjct: 562 AGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLL 621

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           +N YA+ G W +VA +R  MK  N+KK  A SW+E+ +KVH F+  D++HP T+ IY +L
Sbjct: 622 ANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKL 681

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   + +AG+ PN  + LHD    EK   + +HSE+LA+A+ L+  P G  PIR+ KN
Sbjct: 682 DELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPG-APIRVKKN 740

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH+  KF S+I+ R II+RD NRFHHF  G CSC D W
Sbjct: 741 LRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 131/489 (26%), Positives = 235/489 (48%), Gaps = 44/489 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   NAL++ +   G + D R +FD+    R++VS+N  ++ +       +A+QVF  M
Sbjct: 41  DVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 100

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT++     +NAC    ++  G+Q+H  +V      +VF  NAL DMY K G +
Sbjct: 101 VWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRV 160

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D A  +F++M + ++VSWN +ISG + NG   + I+L  +M+  GL P+   +S+IL AC
Sbjct: 161 DIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKAC 220

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                F  GR                              +DDA ++F  +  +D + W 
Sbjct: 221 AGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWN 280

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            +I G +  G+ ++A  +F  +  E +  ++ ++++V+ S A L +    + VH  A  +
Sbjct: 281 ALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKI 340

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  V + LID Y KC    DA  VF    + ++++  SMI   +Q      A+ L+
Sbjct: 341 GFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLF 400

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++L++ L+PD F   S+L+AC     +E+G+     +     ++ +    A ++    +
Sbjct: 401 MEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNA-LVYTYAK 459

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYI 530
              ++ A     SLP +   + WS ++   A  G   HG+ A      +  E IN   +I
Sbjct: 460 CGSIEDAELAFSSLPER-GVVSWSAMIGGLAQHG---HGKRALELFGRMVDEGINPN-HI 514

Query: 531 MLSNMYAAC 539
            ++++  AC
Sbjct: 515 TMTSVLCAC 523



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 131/466 (28%), Positives = 207/466 (44%), Gaps = 78/466 (16%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMI 229
           D + G Q+H   +    G +VFV NAL  MY   G +D AR +FD   + RN VSWN ++
Sbjct: 22  DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLM 81

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------- 267
           S Y+KN Q    I +F EM   G+ P E   S ++ AC                      
Sbjct: 82  SAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYE 141

Query: 268 -------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                         + GR+D A  +F  + + D V W  +I G   NG +  A+ L  +M
Sbjct: 142 KDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 201

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            S  + P+ F +SS++ +CA   +   G+ +HG  +    D D  +   L+DMY K    
Sbjct: 202 KSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFL 261

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL--S 432
           DDA  VF+ M  R+++ WN++I+G +  G+  EA +++  L +E L  +  T  +VL  +
Sbjct: 262 DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKST 321

Query: 433 ACLHADLFERGQNH---------FDSISAVHGITPSLDHYAC------------------ 465
           A L A    R Q H         FD+   V+G+  S    +C                  
Sbjct: 322 ASLEAASATR-QVHALAEKIGFIFDA-HVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIA 379

Query: 466 ---MINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
              MI  L +    + A+ L   +  K   P+  + S+LL+ CA     + G+    HL 
Sbjct: 380 VTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLI 439

Query: 520 ELEPIN---AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           + + ++   AG  ++ +  YA CG  ED     SS+  + V  ++A
Sbjct: 440 KRQFMSDAFAGNALVYT--YAKCGSIEDAELAFSSLPERGVVSWSA 483


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/726 (34%), Positives = 380/726 (52%), Gaps = 105/726 (14%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           LRQ    ++S GQ  ++     ++  C+ ++ +   K +  +      E N  F+   L+
Sbjct: 119 LRQ-FSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANI-FVATGLV 176

Query: 67  HFYAKSGKLFYARDLFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
             Y+K   L  A  LF  +P R + + W A+L+                           
Sbjct: 177 DMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLT--------------------------- 209

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
               G+A  G S +A+Q F  M+    E   +T  S L AC  +     G+Q+HG I+  
Sbjct: 210 ----GYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWS 265

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G NV+V++AL DMYAK G++  AR + D M   ++V WN MI G + +G  ++ + LF
Sbjct: 266 GFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLF 325

Query: 246 QEMQLLGLNPDEVTVSNILG------------------------AC-----------FQT 270
            +M    +  D+ T  ++L                         AC            + 
Sbjct: 326 HKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQ 385

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +  A  +F+ I +KD + WT+++ GY  NG  E AL LF +M +  V  D+F ++ V 
Sbjct: 386 GNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVF 445

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+CA+L  +  G+ VH   +       L   ++LI MY KCG  +DA  VF+ M TRNV+
Sbjct: 446 SACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVI 505

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW ++I GYAQNG                                   L E GQ++F+S+
Sbjct: 506 SWTAIIVGYAQNG-----------------------------------LVETGQSYFESM 530

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
             V+GI P+ DHYACMI+LLGR+  +++A  L+  +  +P++ IW +LLS C + G+++ 
Sbjct: 531 EKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLEL 590

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE A ++L +LEP N+ PY++LSNM++  GRWED A IR +MK+  + K   YSWIE+ +
Sbjct: 591 GERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKS 650

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           +VH F+SEDR+HP    IY ++ +++  ++EAG  P+    L D  EE K +S+ YHSEK
Sbjct: 651 QVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEK 710

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ L+    G  PIRI KN+RVCGDCH  MK+ S I  R IILRD N FHHF+ G C
Sbjct: 711 LAVAFGLLTVAKG-APIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKC 769

Query: 691 SCKDNW 696
           SC D W
Sbjct: 770 SCGDFW 775



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 253/487 (51%), Gaps = 40/487 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+LL   +K+G++  AR LFD+MP RD  +WN ++SA+A  G++ + R LF++ PI++S+
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++++ ++G+   G   E L+ FS+M  D  +P+ YT  S L AC+ L  L  GK IH   
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKC 241
           +   L  N+FV   L DMY+K   + +A +LF  + +R N V W  M++GY +NG+  K 
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           I  F+EM+  G+  +  T  +IL AC                                  
Sbjct: 221 IQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDM 280

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G +  A  +   ++  D VCW +MIVG   +G  E+AL+LF++M + D+R D F+ 
Sbjct: 281 YAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTY 340

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            SV+ S A   +L  G+ VH   +  G D    VS+AL+DMY K G    A  VFN +  
Sbjct: 341 PSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILD 400

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QN 445
           ++V+SW S++ GY  NG   +AL L+  +    +  D F    V SAC    + E G Q 
Sbjct: 401 KDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQV 460

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           H + I +  G   S ++   +I +  +   ++ A+ +  S+  + N + W+ ++   A  
Sbjct: 461 HANFIKSSAGSLLSAEN--SLITMYAKCGCLEDAIRVFDSMETR-NVISWTAIIVGYAQN 517

Query: 506 GDIKHGE 512
           G ++ G+
Sbjct: 518 GLVETGQ 524



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 148/344 (43%), Gaps = 67/344 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           K  Q    + ++G  +    +  ++  CT ++     +++   +  + + PN  ++ + L
Sbjct: 219 KAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSAL 277

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  YAK G L  AR + D M + D++ WN+++      G +++   LF KM  RD     
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRD----- 332

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                                         D+T+ S L + A   +L+ G+ +H   +  
Sbjct: 333 --------------------------IRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
                  V NAL DMYAK G +  A  +F+++ +++++SW  +++GY+ NG  +K + LF
Sbjct: 367 GFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 246 QEMQLLGLNPDEVTVSNILGACFQ-----------------------------------T 270
            +M+   ++ D+  V+ +  AC +                                    
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKC 486

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
           G ++DA R+F  ++ ++ + WT +IVGY QNG  E     F  M
Sbjct: 487 GCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESM 530



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 34/181 (18%)

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI---------------------- 396
           L S+ L+    K G  D+A  +F+ MP R+  +WN MI                      
Sbjct: 38  LDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIK 97

Query: 397 ---------NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-H 446
                    +GY +NG ++E L  + ++  +  KP  +T  SVL AC    L   G+  H
Sbjct: 98  NSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIH 157

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +I     +  ++     ++++  +   + +A  L  SLP + N + W+ +L+  A  G
Sbjct: 158 CYAIKI--QLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215

Query: 507 D 507
           +
Sbjct: 216 E 216


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 362/642 (56%), Gaps = 43/642 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  +A +G   +   +F +MP +D +S+N+ +A F N G S +AL +   M      
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  SAL AC       +G+ +HG +VV  L  N  + NAL  MY K GE+ ++R +
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
             +M  R++V+WN +I GY ++  P K +  FQ M++ G++ + +TV ++L AC   G +
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 274 DDAGR------------------------------------LFHVIKEKDNVCWTTMIVG 297
            + G+                                    LF+ +  ++ + W  M+  
Sbjct: 480 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 539

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              +G  E+ L L ++M S  V  D+FS S  +S+ AKLA L  GQ +HG AV LG + D
Sbjct: 540 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 599

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
             + +A  DMY KCG   +   V  M+P    R++ SWN +I+   ++G   E  A + +
Sbjct: 600 SFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE 656

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +L+  +KP   TFVS+L+AC H  L ++G  ++D I+   G+ P+++H  C+I+LLGRS 
Sbjct: 657 MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSG 716

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            + +A   I  +P KPN L+W +LL+ C + G++  G  AA +L +LEP +   Y++ SN
Sbjct: 717 RLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSN 776

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           M+A  GRWEDV ++R  M  KN+KK  A SW+++ +KV  F   DRTHP+T  IY +L  
Sbjct: 777 MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 836

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           + K ++E+G+  +T   L DT EE+K  ++  HSE+LALAY L+  P G T +RI KN+R
Sbjct: 837 IKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGST-VRIFKNLR 895

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +C DCH   KF S +IGR I+LRD  RFHHF  G CSCKD W
Sbjct: 896 ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 235/476 (49%), Gaps = 40/476 (8%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           + + G V+  R LFD MP+R+ VS+NT ++G    G   E ++ F +M     +P+ +  
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 160 VSALNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            S + AC +   + R G Q+HG +    L  +V+V  A+  +Y   G +  +R +F+ M 
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------- 268
           +RN+VSW  ++ GY   G+P++ ID+++ M+  G+  +E ++S ++ +C           
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQ 181

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                      G +D A  +F  + E+D + W ++   Y QNG 
Sbjct: 182 IIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGH 241

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E++  +F+ M       +  ++S+++S    +     G+ +HG  V +G D  + V + 
Sbjct: 242 IEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNT 301

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MY   G + +A  VF  MPT++++SWNS++  +  +G+ L+AL L   ++      +
Sbjct: 302 LLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVN 361

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF S L+AC   D FE+G+     +  V G+  +      ++++ G+  ++ ++  ++
Sbjct: 362 YVTFTSALAACFTPDFFEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVL 420

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             +P + + + W+ L+   A   D     +AA     +E +++  YI + ++ +AC
Sbjct: 421 LQMPRR-DVVAWNALIGGYAEDEDPDKA-LAAFQTMRVEGVSSN-YITVVSVLSAC 473



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 170/343 (49%), Gaps = 50/343 (14%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K G +  AR LFD M  RN VSWN M+SG ++ G   + ++ F++M  LG+ P    
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 260 VSNILGACFQTGRIDDAG------------------------------------RLFHVI 283
           +++++ AC ++G +   G                                    ++F  +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            +++ V WT+++VGY+  G+ E+ + ++  M  E V  ++ S+S V+SSC  L     G+
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            + G+ V  G++  L V ++LI M    G  D A  +F+ M  R+ +SWNS+   YAQNG
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--D 461
              E+  ++  + + + + +S T  ++LS   H D  + G+        +HG+   +  D
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGR-------GIHGLVVKMGFD 293

Query: 462 HYACMINLLGRS-SDVDKAVD---LIKSLPHKPNSLIWSTLLS 500
              C+ N L R  +   ++V+   + K +P K + + W++L++
Sbjct: 294 SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMA 335



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY K G    A  +F++MP RN VSWN+M++G  + G  LE +  + K+    +KP SF 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
             S+++AC  +    R         A  G+   +     +++L G    V  +  + + +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 487 PHKPNSLIWSTLLSVCAMKGD 507
           P + N + W++L+   + KG+
Sbjct: 121 PDR-NVVSWTSLMVGYSDKGE 140


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/646 (36%), Positives = 366/646 (56%), Gaps = 44/646 (6%)

Query: 93  WNALLSA-----HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           WN  ++A     ++R G     R+LFD MP RD  S+N  I+G    G + +AL V   M
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +  +    T VS L  C QL D+     IH  ++   L  ++FV NAL +MYAK G +
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR  F +M   ++VSWN +I+ Y +N  P      F +MQL G  PD +T+ ++    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 268 FQT------------------------------------GRIDDAGRLFHVIKEKDNVCW 291
            Q+                                    G +D A ++F +I  KD + W
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 292 TTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            T+I GY QNG   +A+ ++  M   +++ P++ +  S++ + A + +L  G  +HG+ +
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              +  D+ V++ LID+Y KCG   DA ++F  +P  + V+WN++I+ +  +G   + L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++L E +KPD  TFVS+LSAC H+   E G+  F  +   +GI PSL HY CM++LL
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLL 666

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  ++ A D IK +P +P++ IW  LL  C + G+I+ G+ A+  LFE++  N G Y+
Sbjct: 667 GRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA  G+WE V  +RS  + + +KK   +S IE++ KV  F + +++HP+ + IYE
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL  L  K++  G+ P+   VL D +E+EK   +  HSE+LA+A+ +I  P   +PIRI 
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIF 845

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVCGDCH   KF S I  R I++RDSNRFHHF  G CSC D W
Sbjct: 846 KNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 148/539 (27%), Positives = 250/539 (46%), Gaps = 98/539 (18%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
            + F+  RL++ YA  G +  +R  FD++P +D+ +WN+++SA+  +G            
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNG------------ 196

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                  ++ AI  F            +  +      P  YT    L AC  L+D   G+
Sbjct: 197 ------HFHEAIGCF------------YQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 235

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH          NVFV  +L  MY++ G    AR LFD M  R++ SWN MISG ++NG
Sbjct: 236 KIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI----------------------- 273
              + +D+  EM+L G+  + VTV +IL  C Q G I                       
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSN 355

Query: 274 ------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                       +DA + F  +   D V W ++I  Y QN     A   F +M     +P
Sbjct: 356 ALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP 415

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTV 380
           D  ++ S+ S  A+     + + VHG  +  G + +D+++ +A++DMY K G+ D A  V
Sbjct: 416 DLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHAD 438
           F ++P ++V+SWN++I GYAQNG   EA+ +Y K+++E   + P+  T+VS+L A  H  
Sbjct: 476 FEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 439 LFERGQNHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
             ++G         +HG        LD +   C+I++ G+   +  A+ L   +P + +S
Sbjct: 535 ALQQGMK-------IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SS 586

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC--------GRW 542
           + W+ ++S   + G   H E   +   E+      P ++   ++ +AC        G+W
Sbjct: 587 VTWNAIISCHGIHG---HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 113/450 (25%), Positives = 193/450 (42%), Gaps = 60/450 (13%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            K +H  +VV     ++F+   L ++YA  G++  +R  FD++  +++ +WN MIS Y+ 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 235 NGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGAC-----------------FQ------- 269
           NG   + I  F ++ L+  + PD  T   +L AC                 FQ       
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAA 254

Query: 270 --------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G    A  LF  +  +D   W  MI G  QNG    AL + +EM  E ++ 
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +  ++ S++  C +L  +    ++H   +  G++ DL VS+ALI+MY K G  +DA   F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
             M   +VVSWNS+I  Y QN   + A   + K+     +PD  T VS+ S         
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 435 ----LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
               +H  +  RG    D +               ++++  +   +D A  + + +P K 
Sbjct: 435 NSRSVHGFIMRRGWLMEDVVIG-----------NAVVDMYAKLGLLDSAHKVFEIIPVK- 482

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASI 548
           + + W+TL++  A  G         + + E + I  N G ++ +   YA  G  +    I
Sbjct: 483 DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 542

Query: 549 RSSMKSKNVK--KFAAYSWIEIDNKVHKFV 576
              +   N+    F A   I++  K  + V
Sbjct: 543 HGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 38/348 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A+ G+++D R  F +M I D VS+N+ IA +        A   F +MQ
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEI 207
            + F+P   T VS  +  AQ  D +  + +HG I+  G L  +V + NA+ DMYAK G +
Sbjct: 410 LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL 469

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGA 266
           D A  +F+ +  ++++SWN +I+GY +NG   + I++++ M+    + P++ T  +IL A
Sbjct: 470 DSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529

Query: 267 ------------------------------CF-----QTGRIDDAGRLFHVIKEKDNVCW 291
                                         C      + GR+ DA  LF+ + ++ +V W
Sbjct: 530 YAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTW 589

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I  +  +G  E  L LF EML E V+PD  +  S++S+C+    +  G+        
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
            G+   L     ++D+  + G  + A+     MP +   S W +++  
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGA 697



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 117/200 (58%), Gaps = 1/200 (0%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D++  NA++  +A+ G +     +F+ +P++D +S+NT I G+A  G + EA++V+  
Sbjct: 450 MEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKM 509

Query: 147 MQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M++     P   T VS L A A +  L++G +IHG+++  NL  +VFV   L D+Y K G
Sbjct: 510 MEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCG 569

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A  LF ++   + V+WN +IS +  +G  +K + LF EM   G+ PD VT  ++L 
Sbjct: 570 RLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLS 629

Query: 266 ACFQTGRIDDAGRLFHVIKE 285
           AC  +G +++    F +++E
Sbjct: 630 ACSHSGFVEEGKWCFRLMQE 649


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/544 (40%), Positives = 326/544 (59%), Gaps = 36/544 (6%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P  +T  + + ACA +  L +GKQ H  I+      +V V+ AL  MYA+ G ++ A  
Sbjct: 7   KPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGH 66

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD+M+ R+  +WN MI+G+ +N   KK + LF EM                        
Sbjct: 67  VFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMS----------------------- 103

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
                       E+D V WT +I GY QNG  +++L +FN+M    ++ D+F + SV+S+
Sbjct: 104 ------------ERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSA 151

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA LA+L  G+  H   V  G   D++V SAL+DMY K G  +DA  VF+ MP RN VSW
Sbjct: 152 CADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSW 211

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NS+I G AQ+G+  +A+ L++++LQ  +KP+  +FV VLSAC H  L   G+ +F+ ++ 
Sbjct: 212 NSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQ 271

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +GI P + HY CMI+LLGR+  +D+A + I  +P +P+  +W  LL  C + G+ +  +
Sbjct: 272 NYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTELAK 331

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
             A HL  +E   AG Y++LSN+YAA G+W+D A +R  MK + V K   YSWIE+   +
Sbjct: 332 RIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWIEVKTIM 391

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           H FV+ + +HP+ + I+E L  L +K++ AG+ PN   VL D +++EK  S+ +HSEKLA
Sbjct: 392 HAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSHHSEKLA 451

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +A+ +I    G T IR+ KN+RVCGDCH  +KF S    R I++RD+NRFHHF  G CSC
Sbjct: 452 IAFGIINTNPGTT-IRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKDGRCSC 510

Query: 693 KDNW 696
            D W
Sbjct: 511 GDYW 514



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 196/386 (50%), Gaps = 18/386 (4%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  +G    +   + +V  C  +  +E  K+  +++    +E +   +   L+H YA+ G
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVV-VQTALVHMYARCG 59

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            L  A  +FDKM  R   +WNA+++ HA++  ++    LF +M  RD VS+   IAG+A 
Sbjct: 60  SLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQ 119

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G+  E+L VF++M+K   +   +   S L+ACA L  L  G+Q H  +V      ++ V
Sbjct: 120 NGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVV 179

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            +AL DMYAK G ++ A  +FD+M  RN VSWN +I+G  ++G+    + LF++M   G+
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGI 239

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDAL 308
            P+E++   +L AC  TG +++    F+++ +   +      +T MI    + G  ++A 
Sbjct: 240 KPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE 299

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV---VLGVDDDLL-VSSAL 364
              N M    V PD     +++ +C       HG     K +   +LG++  +  +   L
Sbjct: 300 NFINGM---PVEPDVSVWGALLGACR-----IHGNTELAKRIAEHLLGMEVQIAGIYVLL 351

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVV 390
            ++Y   G  DDA  V  +M  R V+
Sbjct: 352 SNIYAAAGQWDDAAKVRKLMKDRGVM 377



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 114/224 (50%), Gaps = 33/224 (14%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M+ + V+P++F++S+VV +CA +ASL  G+  H   + +G + D++V +AL+ MY +CG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 374 TDDAWTVFNMMPTRNVVSWNSMIN-------------------------------GYAQN 402
            +DA  VF+ M  R+  +WN+MI                                GYAQN
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   E+L +++++ +  +K D F   SVLSAC      E G+  F +     G    +  
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGR-QFHAYVVQSGFALDIVV 179

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            + ++++  +S  ++ A  +   +P + N + W+++++ CA  G
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQR-NEVSWNSIITGCAQHG 222


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 380/705 (53%), Gaps = 72/705 (10%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PI 118
           N ++  Y KSG L  AR LFD M  R  ++W  L+  +++    ++   LF +M      
Sbjct: 82  NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE 141

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQK--------------DRF------------ 152
            D V++ T ++G        +  QV +++ K              D +            
Sbjct: 142 PDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQL 201

Query: 153 -----EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                E   +T  + L A   L D+  G+QIH  ++  N   NVFV NAL D Y+K   +
Sbjct: 202 FKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 261

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR LFD M  ++ VS+N++ISGY  +G+ K   DLF+E+Q    +  +   + +L   
Sbjct: 262 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 321

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
             T                                   G+ ++A  +F  +  +  V WT
Sbjct: 322 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 381

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y Q G  E+ L LFN+M    V  D+ + +S++ + A +ASL  G+ +H   +  
Sbjct: 382 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 441

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   ++   SAL+D+Y KCG   DA   F  MP RN+VSWN+MI+ YAQNG+    L  +
Sbjct: 442 GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSF 501

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++   L+PDS +F+ VLSAC H+ L E G  HF+S++ ++ + P  +HYA ++++L R
Sbjct: 502 KEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCR 561

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIM 531
           S   ++A  L+  +P  P+ ++WS++L+ C +  + +    AA  LF +E + +A PY+ 
Sbjct: 562 SGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVN 621

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           +SN+YAA G+WE+V+ +  +M+ + VKK  AYSW+EI ++ H F + DR HP+ E I ++
Sbjct: 622 MSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKK 681

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           +  L K ++E G+ P+T   LH+  E+ KV+S+ YHSE+LA+A+ LI  P G +PI +MK
Sbjct: 682 IDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEG-SPILVMK 740

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R C DCH  +K  S I+GR I +RDS RFHHF  G CSC D W
Sbjct: 741 NLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/458 (26%), Positives = 228/458 (49%), Gaps = 11/458 (2%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           ++P+T+  + R+ +F  K+G+L  AR LF+KMP ++ +S N ++S + +SG++ + R LF
Sbjct: 43  FDPDTSRSNFRVGNFL-KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLF 101

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D M  R +V++   I G++     +EA ++F +MQ+   EP   T V+ L+ C       
Sbjct: 102 DGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGN 161

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           +  Q+  +I+       + V N L D Y K   +D A  LF  M   +  ++  ++   +
Sbjct: 162 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANI 221

Query: 234 KNGQPKKCIDLFQEMQLLGLNPD---EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNV 289
                   I L Q++    +  +    V VSN L   + +   + DA +LF  + E+D V
Sbjct: 222 GLDD----IVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGV 277

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            +  +I GY  +GK + A  LF E+        +F  ++++S  +       G+ +H + 
Sbjct: 278 SYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQT 337

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +V   D ++LV ++L+DMY KCG  ++A  +F  +  R+ V W +MI+ Y Q G   E L
Sbjct: 338 IVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGL 397

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L++K+ Q ++  D  TF S+L A         G+    S     G   ++   + ++++
Sbjct: 398 QLFNKMRQASVIADQATFASLLRASASIASLSLGK-QLHSFIIKSGFMSNVFSGSALLDV 456

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +   +  AV   + +P + N + W+ ++S  A  G+
Sbjct: 457 YAKCGSIKDAVQTFQEMPDR-NIVSWNAMISAYAQNGE 493



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 12/149 (8%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           +K+RQA          A +  +  L+     +  + L K+L S +  + +  N  F  + 
Sbjct: 401 NKMRQA-------SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNV-FSGSA 452

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           LL  YAK G +  A   F +MP R+I+SWNA++SA+A++G  +     F +M +     D
Sbjct: 453 LLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 512

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQK 149
           SVS+   ++  ++ G   E L  F+ M +
Sbjct: 513 SVSFLGVLSACSHSGLVEEGLWHFNSMTQ 541



 Score = 47.4 bits (111), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 92/229 (40%), Gaps = 56/229 (24%)

Query: 330 VSSCAKLASLYHGQV-------VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           ++S   LASL   ++       +  + V  G D D   S+  +  + K G    A  +F 
Sbjct: 12  LTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE 71

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN----------------------- 419
            MP +N VS N MI+GY ++G   EA  L+D +++                         
Sbjct: 72  KMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFEL 131

Query: 420 --------LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH------GITPSLDHYAC 465
                    +PD  TFV++LS C        G    + I+ V       G    L     
Sbjct: 132 FVQMQRCGTEPDYVTFVTLLSGC-------NGHEMGNQITQVQTQIIKLGYDSRLIVGNT 184

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG--DIKHGE 512
           +++   +S+ +D A  L K +P + +S  ++ +L  CA  G  DI  G+
Sbjct: 185 LVDSYCKSNRLDLACQLFKEMP-EIDSFTFAAVL--CANIGLDDIVLGQ 230


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/669 (35%), Positives = 379/669 (56%), Gaps = 38/669 (5%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD--------------- 108
           +L+ FYA  G L   R +FD M  +++  WN ++S +A+ G  ++               
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 109 -----LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                   LFDK+  RD +S+N+ I+G+ + G +   L ++ +M     +    T +S L
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
             CA    L  GK +H   +  +    +   N L DMY+K G++D A  +F++M  RN+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  MI+GY ++G+    I L Q+M+  G+  D V +++IL AC ++G +D+   +   I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 284 KEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------RPDKFSISS 328
           K  +      VC   M + Y + G  E A  +F+ M+ +D+          +PD  +++ 
Sbjct: 379 KANNMESNLFVCNALMDM-YAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMAC 437

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+ +CA L++L  G+ +HG  +  G   D  V++AL+D+Y KCGV   A  +F+M+P+++
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +VSW  MI GY  +G   EA+A ++++    ++PD  +F+S+L AC H+ L E+G   F 
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +     I P L+HYACM++LL R+ ++ KA + +++LP  P++ IW  LL  C    DI
Sbjct: 558 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDI 617

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  E  A  +FELEP N G Y++L+N+YA   +WE+V  +R  +  + ++K    SWIEI
Sbjct: 618 ELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEI 677

Query: 569 DNKVHKFVS-EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
             KV+ FVS  + +HP ++ I   L K+ +K++E G  P TK  L +  E +K  ++C H
Sbjct: 678 KGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGH 737

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L+  P   T IR+ KN+RVCGDCH   KF S    R I+LRDSNRFHHF  
Sbjct: 738 SEKLAMAFGLLTLPPRKT-IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 796

Query: 688 GNCSCKDNW 696
           G CSC+  W
Sbjct: 797 GYCSCRGFW 805



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/421 (28%), Positives = 193/421 (45%), Gaps = 42/421 (9%)

Query: 116 MPIRDSVS-----------YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           +PIR S +           YN  I  F   G    A+++    QK   E   Y   S L 
Sbjct: 50  IPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYG--SVLQ 107

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
            CA L     GK++H  I   ++G +  +   L   YA  G++ + R +FD M  +N+  
Sbjct: 108 LCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYL 167

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           WN M+S Y K G  K+ I LF+ M   G+               +  R + A  LF  + 
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGI---------------EGKRPESAFELFDKLC 212

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           ++D + W +MI GY  NG  E  L ++ +M+   +  D  +I SV+  CA   +L  G+ 
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA 272

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VH  A+    +  +  S+ L+DMY KCG  D A  VF  M  RNVVSW SMI GY ++G+
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGR 332

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
              A+ L  ++ +E +K D     S+L AC  +   + G++  D I A + +  +L    
Sbjct: 333 SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA-NNMESNLFVCN 391

Query: 465 CMINLLGRSSDVDKAVDLIKSL-------------PHKPNSLIWSTLLSVCAMKGDIKHG 511
            ++++  +   ++ A  +  ++               KP+S   + +L  CA    ++ G
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERG 451

Query: 512 E 512
           +
Sbjct: 452 K 452



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 50/311 (16%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
            +++ C     + L K + S    + +E    F  N LL  Y+K G L  A  +F+KM  
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINF-SNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 88  RDIISWNALLSAH-----------------------------------ARSGSVQDLRAL 112
           R+++SW ++++ +                                   ARSGS+ + + +
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 113 FDKMPIRDSVS----YNTAIAGFANKGFSREALQVFSRM-QKD---------RFEPTDYT 158
            D +   +  S     N  +  +A  G    A  VFS M  KD           +P   T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L ACA L  L RGK+IHG I+      +  V NAL D+Y K G +  AR LFD + 
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           +++LVSW +MI+GY  +G   + I  F EM+  G+ PDEV+  +IL AC  +G ++   R
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 279 LFHVIKEKDNV 289
            F+++K   N+
Sbjct: 555 FFYIMKNDFNI 565



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 50/200 (25%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A T ++  C R   ++  K +  ++  N  E N  F+ N L+  YAK G +  A  +F  
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNL-FVCNALMDMYAKCGSMEAANSVFST 412

Query: 85  MPLRDIISW-------------------------------------------------NA 95
           M ++DIISW                                                 NA
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +   R LFD +P +D VS+   IAG+   G+  EA+  F+ M+    EP 
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 156 DYTHVSALNACAQLLDLRRG 175
           + + +S L AC+    L +G
Sbjct: 533 EVSFISILYACSHSGLLEQG 552


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 257/726 (35%), Positives = 381/726 (52%), Gaps = 117/726 (16%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKM---PLRDIISWNALLSAHARSGSVQDLRALF 113
           +  F+ N ++  Y K G L +A ++FD +    ++D++SWN+++SA+  +       ALF
Sbjct: 292 SNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALF 351

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
            KM  R  +S                              P   + V+ L ACA L    
Sbjct: 352 HKMTTRHLMS------------------------------PDVISLVNILPACASLAASL 381

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM----- 228
           RG+Q+HG  +   L  +VFV NA+ DMYAK G++++A  +F RM  +++VSWN M     
Sbjct: 382 RGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYS 441

Query: 229 ------------------------------ISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
                                         I+GY + GQ  + +D+F++M   G  P+ V
Sbjct: 442 QAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVV 501

Query: 259 TVSNILGACFQTGRI------------------------DD------------------- 275
           T+ ++L AC   G +                        DD                   
Sbjct: 502 TLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEV 561

Query: 276 AGRLFHVIKEKDN--VCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVS 331
           A ++F  +  KD   V WT MI GY Q+G   +AL LF+ M   D  ++P+ F++S  + 
Sbjct: 562 ARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALV 621

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +CA+LA+L  G+ VH   +       +L V++ LIDMY K G  D A  VF+ MP RN V
Sbjct: 622 ACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAV 681

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW S++ GY  +G+  +AL ++D++ +  L PD  TF+ VL AC H+ + + G N F+ +
Sbjct: 682 SWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRM 741

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S   G+ P  +HYACM++L GR+  + +A+ LI  +P +P  ++W  LLS C +  +++ 
Sbjct: 742 SKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVEL 801

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE AA  L ELE  N G Y +LSN+YA   RW+DVA IR +MK   +KK    SWI+   
Sbjct: 802 GEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRK 861

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            V  F   DR+HP+++ IYE L+ LI++++  G+ P T   LHD  +EEK   +  HSEK
Sbjct: 862 GVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEK 921

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LALAY ++   H   PIRI KN+R+CGDCH  + + S II   IILRDS+RFHHF  G+C
Sbjct: 922 LALAYGILTL-HPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSC 980

Query: 691 SCKDNW 696
           SCK  W
Sbjct: 981 SCKGYW 986



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 236/523 (45%), Gaps = 96/523 (18%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSY--NTAIAGFANKGFSREALQVFSRMQKDRFE 153
           L+  +  S S      L +++P   S  +  N  I    + G  R+   ++ +M+   + 
Sbjct: 197 LIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWT 256

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT      ACA L  L  G  +H  +       NVFV NA+  MY K G +  A  +
Sbjct: 257 PDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNM 316

Query: 214 FDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGAC-- 267
           FD + +R   +LVSWN ++S Y+        + LF +M    L +PD +++ NIL AC  
Sbjct: 317 FDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACAS 376

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G++++A ++F  +K KD V W  M
Sbjct: 377 LAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 295 IVGYTQNGKEEDALILFNEMLSEDV----------------------------------- 319
           + GY+Q G+ E AL LF  M  E++                                   
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGVD------DDLLVSSALIDMYCKC 371
           RP+  ++ S++S+C  + +L HG+  H  A+  +L +D      DDL V + LIDMY KC
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 372 GVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQ--ENLKPDSFTF 427
             T+ A  +F+ +    R+VV+W  MI GYAQ+G    AL L+  + +  +++KP+ FT 
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 428 VSVLSAC--LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
              L AC  L A  F R Q H   +   +G +  L    C+I++  +S DVD A  +  +
Sbjct: 617 SCALVACARLAALRFGR-QVHAYVLRNFYG-SVMLFVANCLIDMYSKSGDVDTAQIVFDN 674

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +P + N++ W++L++   M G    GE A R   E+  +   P
Sbjct: 675 MPQR-NAVSWTSLMTGYGMHG---RGEDALRVFDEMRKVPLVP 713



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C R+  +   +++ +++  NFY     F+ N L+  Y+KSG +  A+ +FD MP R+
Sbjct: 620 LVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
            +SW +L++ +   G  +D   +FD+M     + D +++   +   ++ G     +  F+
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFN 739

Query: 146 RMQKD 150
           RM KD
Sbjct: 740 RMSKD 744



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 51/244 (20%), Positives = 104/244 (42%), Gaps = 24/244 (9%)

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-- 387
           +++  +  SL H +++H ++++ G+   L  ++ LI  Y     T  A  +   +P    
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFHL--ATNLIGTYIASNSTAYAILLLERLPPSPS 222

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +V  WN +I      G   +   LY ++      PD +TF  V  AC +      G +  
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMK 505
            ++S   G   ++     ++++ G+   +  A ++   L H+   + + W++++S     
Sbjct: 283 ATVSR-SGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWA 341

Query: 506 GDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            D         +M  RHL   + I+      L N+  AC      AS+ +S++ + V  F
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVIS------LVNILPAC------ASLAASLRGRQVHGF 389

Query: 561 AAYS 564
           +  S
Sbjct: 390 SIRS 393


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/711 (33%), Positives = 381/711 (53%), Gaps = 41/711 (5%)

Query: 25   AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
             Y  L+   ++    E A  L   M L+  EP++  L + L+   +  G LF  + L   
Sbjct: 339  TYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLAS-LVVACSSDGTLFSGQQLHAY 397

Query: 85   MPLRDIIS----WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
                   S      ALL+ +A+   ++     F +  + + V +N  +  +      R +
Sbjct: 398  TTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNS 457

Query: 141  LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
             ++F +MQ +   P  YT+ S L  C +L DL  G+QIH +I+  +   N +V + L DM
Sbjct: 458  FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDM 517

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            YAK G++D A  +  R   +++VSW  MI+GY +     K +  F++M   G+  DEV +
Sbjct: 518  YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 577

Query: 261  SNILGAC--------------------------FQT---------GRIDDAGRLFHVIKE 285
            +N + AC                          FQ          G I++A   F   + 
Sbjct: 578  TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEA 637

Query: 286  KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
             DN+ W  ++ G+ Q+G  E+AL +F  M  E +  + F+  S V + ++ A++  G+ V
Sbjct: 638  GDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQV 697

Query: 346  HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
            H      G D +  V +A+I MY KCG   DA   F  +  +N VSWN+MIN Y+++G  
Sbjct: 698  HAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFG 757

Query: 406  LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             EAL  +D+++  N++P+  T V VLSAC H  L ++G  +F+S++  +G+ P  +HY C
Sbjct: 758  SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVC 817

Query: 466  MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
            ++++L R+  + +A D I  +P +P++L+W TLLS C +  +++ GE AA HL ELEP +
Sbjct: 818  VVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 877

Query: 526  AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            +  Y++LSN+YA C +W+     R  MK K VKK    SWIE+ N +H F   D+ HP  
Sbjct: 878  SATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 937

Query: 586  EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
            + I+E    L K+  E G+  +   +L + Q+E+K  +I  HSEKLA+++ L+  P    
Sbjct: 938  DEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLP-ATM 996

Query: 646  PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PI +MKN+RVC DCH ++KF S +  R II+RD+ RFHHF GG CSCKD W
Sbjct: 997  PINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 219/466 (46%), Gaps = 38/466 (8%)

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           +AR ++  +    I+  N L+  ++R+G V   R +FD + ++D  S+   I+G +    
Sbjct: 193 HARIIYQGLGKSTIVC-NPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNEC 251

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             EA+++F  M      PT Y   S L+AC ++  L  G+Q+HG ++      + +V NA
Sbjct: 252 EVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 311

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L  +Y   G +  A  +F  M+ R+ V++N +I+G  + G  +K ++LF+ MQL GL PD
Sbjct: 312 LVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPD 371

Query: 257 EVTVSNILGACFQTGR-----------------------------------IDDAGRLFH 281
             T+++++ AC   G                                    I+ A   F 
Sbjct: 372 SNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFL 431

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
             + ++ V W  M+V Y       ++  +F +M  E++ P++++  S++ +C +L  L  
Sbjct: 432 ETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLEL 491

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +H + +      +  V S LIDMY K G  D AW +      ++VVSW +MI GY Q
Sbjct: 492 GEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 551

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
              D +AL  + ++L   ++ D     + +SAC      + GQ    + + V G +  L 
Sbjct: 552 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ-QIHAQACVSGFSSDLP 610

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
               ++ L  +  ++++A  L        +++ W+ L+S     G+
Sbjct: 611 FQNALVTLYSKCGNIEEAY-LAFEQTEAGDNIAWNALVSGFQQSGN 655



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/444 (26%), Positives = 204/444 (45%), Gaps = 44/444 (9%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           LL  +   G +     +FD+MP R   ++N  I   A++  S +   +F RM  +   P 
Sbjct: 109 LLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPN 168

Query: 156 DYTHVSALNAC-AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           + T    L AC    +     +QIH +I+   LG +  V N L D+Y++ G +D+AR +F
Sbjct: 169 EGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVF 228

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
           D +  ++  SW  MISG  KN    + I LF +M +LG+ P     S++L AC       
Sbjct: 229 DGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLE 288

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                       F  G +  A  +F  + ++D V + T+I G +
Sbjct: 289 IGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLS 348

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q G  E A+ LF  M  + + PD  +++S+V +C+   +L+ GQ +H     LG   +  
Sbjct: 349 QCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDK 408

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +  AL+++Y KC   + A   F      NVV WN M+  Y        +  ++ ++  E 
Sbjct: 409 IEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEE 468

Query: 420 LKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYAC--MINLLGRSSDV 476
           + P+ +T+ S+L  C+     E G Q H    S +   +  L+ Y C  +I++  +   +
Sbjct: 469 IVPNQYTYPSILKTCIRLGDLELGEQIH----SQIIKTSFQLNAYVCSVLIDMYAKLGKL 524

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLS 500
           D A D++     K + + W+T+++
Sbjct: 525 DTAWDILIRFAGK-DVVSWTTMIA 547



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 201/475 (42%), Gaps = 76/475 (16%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+++H +I+      N  +   L D Y   G++D A  +FD M  R + +WN MI  
Sbjct: 84  LDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKE 143

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
                   K   LF  M    + P+E T S +L AC                        
Sbjct: 144 LASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGK 203

Query: 268 ------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G +D A R+F  +  KD+  W  MI G ++N  E +A+ LF +M 
Sbjct: 204 STIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMY 263

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              + P  ++ SSV+S+C K+ SL  G+ +HG  + LG   D  V +AL+ +Y   G   
Sbjct: 264 VLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLI 323

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+ M  R+ V++N++ING +Q G   +A+ L+ ++  + L+PDS T  S++ AC 
Sbjct: 324 SAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACS 383

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD-------------- 481
                  GQ    + +   G   +      ++NL  + SD++ A++              
Sbjct: 384 SDGTLFSGQ-QLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWN 442

Query: 482 -------LIKSLPHK-------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
                  L+  L +              PN   + ++L  C   GD++ GE     + + 
Sbjct: 443 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKT 502

Query: 522 E-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF----AAYSWIEIDNK 571
              +NA    +L +MYA  G+ +    I      K+V  +    A Y+    D+K
Sbjct: 503 SFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDK 557



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 14/189 (7%)

Query: 319 VRPDKFSISSVVSSCAKL-ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +RP+  ++  ++  C K   SL  G+ +H + + LG D++  +S  L+D Y   G  D A
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             VF+ MP R + +WN MI   A      +   L+ +++ EN+ P+  TF  VL AC   
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC--- 179

Query: 438 DLFERGQNHFDSISAVH------GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
                G   FD +  +H      G+  S      +I+L  R+  VD+A  +   L  K +
Sbjct: 180 ---RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH 236

Query: 492 SLIWSTLLS 500
           S  W  ++S
Sbjct: 237 S-SWVAMIS 244


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/640 (38%), Positives = 373/640 (58%), Gaps = 51/640 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K      A+ LFD MP R++I+W A+++ +A+   ++  R  FD MP R  V
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  ++G+A  G + E L++F  M     EP + T V+ ++AC+   D      +   +
Sbjct: 227 SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKC 241
               +  N FVR AL DMYAK G I  AR +FD +   RN V+WN MIS Y +       
Sbjct: 287 HQKQIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTR------- 339

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +D A  LF+ +  ++ V W +MI GY QN
Sbjct: 340 ----------------------------VGNLDSARELFNTMPGRNVVTWNSMIAGYAQN 371

Query: 302 GKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G+   A+ LF EM++ + + PD+ ++ SV+S+C  L +L  G  V    V    ++ + +
Sbjct: 372 GQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV----VRFLTENQIKL 427

Query: 361 S----SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           S    +A+I MY +CG  +DA  VF  M TR+VVS+N++I+G+A +G  +EA+ L   + 
Sbjct: 428 SISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMK 487

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +  ++PD  TF+ VL+AC HA L E G+  F+SI       P++DHYACM++LLGR  ++
Sbjct: 488 EGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGEL 542

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           + A   ++ +P +P++ ++ +LL+   +   ++ GE+AA  LFELEP N+G +I+LSN+Y
Sbjct: 543 EDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIY 602

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A+ GRW+DV  IR +MK   VKK   +SW+E   K+HKF+  DR+H  ++ IY+ L +L 
Sbjct: 603 ASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELR 662

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK++EAG+  +   VL D +EEEK + +  HSEKLA+ Y L+    G   IR++KN+RVC
Sbjct: 663 KKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAV-IRVVKNLRVC 721

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K  S + GR II+RD+NRFH F  G CSCKD W
Sbjct: 722 WDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/376 (31%), Positives = 184/376 (48%), Gaps = 59/376 (15%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGY 232
           G   H  ++    G + FVRNA+ DMYA+ G I  AR +FD + +  R +  WN M+SGY
Sbjct: 114 GIGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGY 173

Query: 233 LK---NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
            K    GQ +   D+  E  +       +T + ++    +   ++ A R F  + E+  V
Sbjct: 174 WKWESEGQAQWLFDVMPERNV-------ITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK------LASLYHGQ 343
            W  M+ GY QNG  E+ L LF+EM++  + PD+ +  +V+S+C+        ASL   +
Sbjct: 227 SWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLV--R 284

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCG------------------VT----------- 374
            +H K + L    +  V +AL+DMY KCG                  VT           
Sbjct: 285 TLHQKQIQL----NCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRV 340

Query: 375 ---DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSV 430
              D A  +FN MP RNVV+WNSMI GYAQNGQ   A+ L+ +++  + L PD  T VSV
Sbjct: 341 GNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 400

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +SAC H    E G N        + I  S+  +  MI +  R   ++ A  + + +  + 
Sbjct: 401 ISACGHLGALELG-NWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATR- 458

Query: 491 NSLIWSTLLSVCAMKG 506
           + + ++TL+S  A  G
Sbjct: 459 DVVSYNTLISGFAAHG 474



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 125/259 (48%), Gaps = 34/259 (13%)

Query: 50  DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL 109
           +L  Y  + T+  N ++  Y + G L  AR+LF+ MP R++++WN++             
Sbjct: 320 ELGAYRNSVTW--NAMISAYTRVGNLDSARELFNTMPGRNVVTWNSM------------- 364

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQ 168
                             IAG+A  G S  A+++F  M    +  P + T VS ++AC  
Sbjct: 365 ------------------IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 406

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  L  G  +   +    +  ++   NA+  MY++ G ++ A+ +F  M  R++VS+N +
Sbjct: 407 LGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTL 466

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ISG+  +G   + I+L   M+  G+ PD VT   +L AC   G +++  ++F  IK+   
Sbjct: 467 ISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAI 526

Query: 289 VCWTTMIVGYTQNGKEEDA 307
             +  M+    + G+ EDA
Sbjct: 527 DHYACMVDLLGRVGELEDA 545



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 18/267 (6%)

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           LF+     +   +T+M+  Y+        +++F  M    VRPD F    ++ S      
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGI 115

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMI 396
            +H  V+      LG   D  V +A+IDMY + G    A  VF+ +P   R V  WN+M+
Sbjct: 116 GFHAHVLK-----LGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMV 170

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS--AVH 454
           +GY +   + +A  L+D + + N+     T+ ++++        E  + +FD +   +V 
Sbjct: 171 SGYWKWESEGQAQWLFDVMPERNV----ITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
                L  YA      G + +V +  D + +   +P+   W T++S C+ +GD       
Sbjct: 227 SWNAMLSGYAQN----GLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASL 282

Query: 515 ARHLFELE-PINAGPYIMLSNMYAACG 540
            R L + +  +N      L +MYA CG
Sbjct: 283 VRTLHQKQIQLNCFVRTALLDMYAKCG 309


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/672 (35%), Positives = 373/672 (55%), Gaps = 65/672 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            ++N L+  Y+K   L  A+ LFDK   ++I+SWN+++  +AR   V     L  KM   
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D                        ++M+ D F     T ++ L  C +  +L+  K++H
Sbjct: 300 D------------------------AKMKADEF-----TILNVLPVCLERSELQSLKELH 330

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G      L  N  V NA    Y + G +  +  +FD M+ + + SWN ++ GY +N  P+
Sbjct: 331 GYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPR 390

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQ------------------------------ 269
           K +DL+ +M   GL+PD  T+ ++L AC +                              
Sbjct: 391 KALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLL 450

Query: 270 -----TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                 G+   A  LF  ++ +  V W  MI GY+QNG  ++A+ LF +MLS+ ++P + 
Sbjct: 451 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 510

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +I  V  +C++L++L  G+ +H  A+   + +D+ VSS++IDMY K G    +  +F+ +
Sbjct: 511 AIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRL 570

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             ++V SWN +I GY  +G+  EAL L++K+L+  LKPD FTF  +L AC HA L E G 
Sbjct: 571 REKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGL 630

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            +F+ +  +H I P L+HY C++++LGR+  +D A+ LI+ +P  P+S IWS+LLS C +
Sbjct: 631 EYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRI 690

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
            G++  GE  A  L ELEP     Y+++SN++A  G+W+DV  +R  MK   ++K A  S
Sbjct: 691 HGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCS 750

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           WIE+  KVH F+  D   PE E + E   +L  K+   G++P+T  VLHD +EE+K+  +
Sbjct: 751 WIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGIL 810

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
             HSEKLA+++ L+    G+ P+R+ KN+R+CGDCH   KF S ++ R I++RD+ RFHH
Sbjct: 811 RGHSEKLAISFGLLNTAKGL-PVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHH 869

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 870 FRDGICSCGDYW 881



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 196/385 (50%), Gaps = 39/385 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM- 147
           D+   NAL++ + + G V++   +F+ MP R+ VS+N+ I GF+  GF +E+   F  M 
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 148 -QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
             ++ F P   T V+ L  CA   D+ +G  +HG  V   L   + V N+L DMY+K   
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL--LGLNPDEVTVSNIL 264
           + +A+ LFD+ + +N+VSWN MI GY +     +   L Q+MQ     +  DE T+ N+L
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 265 GACFQ-----------------------------------TGRIDDAGRLFHVIKEKDNV 289
             C +                                    G +  + R+F ++  K   
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  ++ GY QN     AL L+ +M    + PD F+I S++ +C+++ SL++G+ +HG A
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFA 434

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G+  D  +  +L+ +Y  CG    A  +F+ M  R++VSWN MI GY+QNG   EA+
Sbjct: 435 LRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAI 494

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
            L+ ++L + ++P     + V  AC
Sbjct: 495 NLFRQMLSDGIQPYEIAIMCVCGAC 519



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 218/449 (48%), Gaps = 77/449 (17%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C +  D+E+ +RL   +  +    N   L+ R++  Y+  G    +R +FDK+  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++  WNA++SA+ R+   +D  ++F ++                              + 
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSEL------------------------------IS 93

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P ++T    + ACA LLDL  G+ IHG     +L  +VFV NAL  MY K G ++
Sbjct: 94  VTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 153

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL------------------ 250
           +A  +F+ M  RNLVSWN +I G+ +NG  ++  + F+EM +                  
Sbjct: 154 EAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPV 213

Query: 251 -------------------LGLNPDEVTVSNILGACFQTGR-IDDAGRLFHVIKEKDNVC 290
                              LGLN +E+ V+N L   +   R + +A  LF    +K+ V 
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLN-EELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS 272

Query: 291 WTTMIVGYTQNGKEED---ALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVV 345
           W +MI GY    +EED      L  +M +ED  ++ D+F+I +V+  C + + L   + +
Sbjct: 273 WNSMIGGYA---REEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG +   G+  + LV++A I  Y +CG    +  VF++M T+ V SWN+++ GYAQN   
Sbjct: 330 HGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDP 389

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSAC 434
            +AL LY ++    L PD FT  S+L AC
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLAC 418



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 205/463 (44%), Gaps = 93/463 (20%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA-LTDMYAKGGEIDKARWLFDRMNNRN 221
           L AC Q  D+  G+++H  +       N FV N  +  MY+  G    +R +FD++  +N
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKN 64

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF------------ 268
           L  WN ++S Y +N   +  + +F E+  +    PD  T+  ++ AC             
Sbjct: 65  LFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIH 124

Query: 269 -----------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  + G +++A ++F  + E++ V W ++I G+++NG  +
Sbjct: 125 GMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQ 184

Query: 306 DALILFNEML--SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           ++   F EML   E   PD  ++ +V+  CA    +  G  VHG AV LG++++L+V+++
Sbjct: 185 ESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNS 244

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--LK 421
           LIDMY KC    +A  +F+    +N+VSWNSMI GYA+         L  K+  E+  +K
Sbjct: 245 LIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMK 304

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI------------------------- 456
            D FT ++VL  CL        ++   S+  +HG                          
Sbjct: 305 ADEFTILNVLPVCLE-------RSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGA 357

Query: 457 ------------TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSV 501
                       T ++  +  ++    ++SD  KA+DL   +      P+     +LL  
Sbjct: 358 LCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 417

Query: 502 CAMKGDIKHGEMAARHLFELE-PINAGPYIMLS--NMYAACGR 541
           C+    + +GE    H F L   +   P+I +S  ++Y  CG+
Sbjct: 418 CSRMKSLHYGEEI--HGFALRNGLAVDPFIGISLLSLYICCGK 458



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 165/329 (50%), Gaps = 40/329 (12%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+L C+R+  +   + +      N    +  F+   LL  Y   GK F A+ LFD M  R
Sbjct: 414 LLLACSRMKSLHYGEEIHGFALRNGLAVDP-FIGISLLSLYICCGKPFAAQVLFDGMEHR 472

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            ++SWN +                               IAG++  G   EA+ +F +M 
Sbjct: 473 SLVSWNVM-------------------------------IAGYSQNGLPDEAINLFRQML 501

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            D  +P +   +    AC+QL  LR GK++H   +  +L  ++FV +++ DMYAKGG I 
Sbjct: 502 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 561

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            ++ +FDR+  +++ SWN++I+GY  +G+ K+ ++LF++M  LGL PD+ T + IL AC 
Sbjct: 562 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 621

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++D    F+ +    N+      +T ++    + G+ +DAL L  EM  +   PD 
Sbjct: 622 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD---PDS 678

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVL 352
              SS++SSC    +L  G+ V  K + L
Sbjct: 679 RIWSSLLSSCRIHGNLGLGEKVANKLLEL 707



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/197 (23%), Positives = 96/197 (48%), Gaps = 15/197 (7%)

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
           +D ++++ +I MY  CG   D+  VF+ +  +N+  WN++++ Y +N    +A++++ +L
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSEL 91

Query: 416 LQ-ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMIN 468
           +     KPD+FT   V+ AC  A L + G         +HG+   +D  +       +I 
Sbjct: 92  ISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQI-----IHGMATKMDLVSDVFVGNALIA 144

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           + G+   V++AV + + +P + N + W++++   +  G ++    A R +   E      
Sbjct: 145 MYGKCGLVEEAVKVFEHMPER-NLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPD 203

Query: 529 YIMLSNMYAACGRWEDV 545
              L  +   C   ED+
Sbjct: 204 VATLVTVLPVCAGEEDI 220


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/642 (39%), Positives = 358/642 (55%), Gaps = 63/642 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +A+ GS+ D R +F  M  +DSVS+N+ I G        EA++ +  M++    
Sbjct: 353 NGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEIL 412

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T +S++++CA L   + G+QIHG+ +   +  NV V NAL  +YA+ G +++ R +
Sbjct: 413 PGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKI 472

Query: 214 FDRMNNRNLVSWNLMISGY-----------------LKNGQPKKCIDL-----------F 245
           F  M   + VSWN +I                    L+ GQ    I             F
Sbjct: 473 FSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSF 532

Query: 246 QEM--QLLGLN-----PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK-DNVCWTTMIV 296
            E+  Q+ GL       DE T  N L AC+ + G +D   ++F  + E+ D+V W +MI 
Sbjct: 533 GELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS 592

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  N     AL L   M+    R D F  ++V+S+ A +A+L  G  VH  +V   ++ 
Sbjct: 593 GYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLES 652

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D++V SAL+DMY KCG  D A   FN MP         +      +GQ            
Sbjct: 653 DVVVGSALVDMYSKCGRLDYALRFFNTMP---------LFANMKLDGQT----------- 692

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
                PD  TFV VLSAC HA L E G  HF+S+S  +G+ P ++H++CM +LLGR+ ++
Sbjct: 693 ----PPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGEL 748

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH--GEMAARHLFELEPINAGPYIMLSN 534
           DK  D I+ +P KPN LIW T+L  C      K   G+ AA  LF+LEP NA  Y++L N
Sbjct: 749 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 808

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           MYAA GRWED+   R  MK  +VKK A YSW+ + + VH FV+ D++HP+ ++IY++L +
Sbjct: 809 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 868

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L +K+++AG+ P T   L+D ++E K + + YHSEKLA+A+ L  +     PIRIMKN+R
Sbjct: 869 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLR 928

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VCGDCH   K  S I GR IILRDSNRFHHF  G CSC D W
Sbjct: 929 VCGDCHSAFKHISKIEGRQIILRDSNRFHHFQDGECSCSDFW 970



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 229/478 (47%), Gaps = 50/478 (10%)

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           + KLF++R L+     +D+   N L++A+  +G     R +FD+MP+R+ VS+   ++G+
Sbjct: 19  AAKLFHSR-LYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGY 77

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGG 189
           +  G  +EAL     M K+      Y  VSAL AC +L  + +  G+QIHG +   +   
Sbjct: 78  SRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILFGRQIHGLLFKLSYAV 137

Query: 190 NVFVRNALTDMYAK-GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           +  V N L  MY K GG +  A   FD +  +N VSWN +IS Y + G  +    +F  M
Sbjct: 138 DAVVSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSM 197

Query: 249 QLLGLNPDEVTV-------------------------------------SNILGACFQTG 271
           Q  G  P E T                                      S ++ A  ++G
Sbjct: 198 QCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVSAFAKSG 257

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSI---S 327
            +  A ++F+ ++ ++ V    ++VG  +    E+A  LF +M S  DV P+ + I   S
Sbjct: 258 SLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSS 317

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPT 386
               S A+   L  G+ VHG  +  G+ D ++ + + L++MY KCG   DA  VF  M  
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMTE 377

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN- 445
           ++ VSWNSMI G  QN   +EA+  Y  + +  + P SFT +S +S+C      + GQ  
Sbjct: 378 KDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQQI 437

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           H +S+    GI  ++     ++ L   +  +++   +  S+P + + + W++++   A
Sbjct: 438 HGESLKL--GIDLNVSVSNALMTLYAETGCLNECRKIFSSMP-EHDQVSWNSIIGALA 492



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 227/475 (47%), Gaps = 53/475 (11%)

Query: 89  DIISWNALLSAHARSGSV--QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           D +  N L+S + + G      LRA FD + +++SVS+N+ I+ ++  G  R A ++F  
Sbjct: 138 DAVVSNVLISMYWKCGGSLGYALRA-FDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYS 196

Query: 147 MQKDRFEPTDYTHVSALNACAQLL--DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           MQ D   PT+YT  S +     L   D+R  +QI   I       ++FV + L   +AK 
Sbjct: 197 MQCDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGFLTDLFVGSGLVSAFAKS 256

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTV--- 260
           G +  AR +F++M  RN V+ N ++ G ++    ++   LF +M  ++ ++P+   +   
Sbjct: 257 GSLIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLS 316

Query: 261 ----------------SNILGACFQTGRID--------------------DAGRLFHVIK 284
                             + G    TG +D                    DA R+F  + 
Sbjct: 317 SFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMT 376

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           EKD+V W +MI G  QN    +A+  +  M   ++ P  F++ S +SSCA L     GQ 
Sbjct: 377 EKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEILPGSFTLISSISSCASLKWAKLGQQ 436

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG+++ LG+D ++ VS+AL+ +Y + G  ++   +F+ MP  + VSWNS+I   A + +
Sbjct: 437 IHGESLKLGIDLNVSVSNALMTLYAETGCLNECRKIFSSMPEHDQVSWNSIIGALASSER 496

Query: 405 DL-EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
            L EA+A +   L+   K +  TF SVLSA       E G+     ++  + I       
Sbjct: 497 SLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGK-QIHGLALKYNIADEATTE 555

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             +I   G+  ++D    +   +  + + + W++++S     G I H E+ A+ L
Sbjct: 556 NALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMIS-----GYI-HNELLAKAL 604



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 35/197 (17%)

Query: 328 SVVSSCAK---LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           S V SC      A L+H ++        G++ D+ + + LI+ Y + G +  A  VF+ M
Sbjct: 8   SFVQSCIGHRGAAKLFHSRLYKN-----GLEKDVYLCNNLINAYLETGDSVSARKVFDEM 62

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD----LF 440
           P RN VSW  +++GY++NG+  EAL     +++E +  + + FVS L AC   D    LF
Sbjct: 63  PLRNCVSWACVVSGYSRNGEHKEALVFLRDMVKEGVFSNHYAFVSALRACQELDSVGILF 122

Query: 441 ERGQNHFDSISAVHGITPSLDHY--ACMINLL--------GRSSDVDKAVDLIKSLPHKP 490
            R          +HG+   L +   A + N+L        G      +A D ++      
Sbjct: 123 GR---------QIHGLLFKLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDDVQV----K 169

Query: 491 NSLIWSTLLSVCAMKGD 507
           NS+ W++++SV +  GD
Sbjct: 170 NSVSWNSIISVYSQTGD 186


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/669 (35%), Positives = 379/669 (56%), Gaps = 38/669 (5%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD--------------- 108
           +L+ FYA  G L   R +FD M  +++  WN ++S +A+ G  ++               
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 109 -----LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                   LFDK+  RD +S+N+ I+G+ + G +   L ++ +M     +    T +S L
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
             CA    L  GK +H   +  +    +   N L DMY+K G++D A  +F++M  RN+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  MI+GY ++G+    I L Q+M+  G+  D V +++IL AC ++G +D+   +   I
Sbjct: 319 SWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 284 KEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------RPDKFSISS 328
           K  +      VC   M + Y + G  E A  +F+ M+ +D+          +PD  +++ 
Sbjct: 379 KANNMESNLFVCNALMDM-YAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMAC 437

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+ +CA L++L  G+ +HG  +  G   D  V++AL+D+Y KCGV   A  +F+M+P+++
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +VSW  MI GY  +G   EA+A ++++    ++PD  +F+S+L AC H+ L E+G   F 
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +     I P L+HYACM++LL R+ ++ KA + I++LP  P++ IW  LL  C    DI
Sbjct: 558 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDI 617

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  E  A  +FELEP N+G Y++L+N+YA   +WE+V  +R  +  + ++K    SWIEI
Sbjct: 618 ELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEI 677

Query: 569 DNKVHKFVS-EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
             KV+ FVS  + +HP ++ I   L K+ +K++E G  P TK  L +  E +K  ++C H
Sbjct: 678 KGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGH 737

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L+  P   T IR+ KN+RVCGDCH   KF S    R I+LRD NRFHHF  
Sbjct: 738 SEKLAMAFGLLTLPPRKT-IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKD 796

Query: 688 GNCSCKDNW 696
           G CSC+  W
Sbjct: 797 GYCSCRGFW 805



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 194/421 (46%), Gaps = 42/421 (9%)

Query: 116 MPIRDSVS-----------YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           +PIR S +           YN  I  F   G    A+++    +K   E   Y+  S L 
Sbjct: 50  IPIRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETKTYS--SVLQ 107

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
            CA L     GK++H  I   ++G +  +   L   YA  G++ + R +FD M  +N+  
Sbjct: 108 LCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYL 167

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           WN M+S Y K G  K+ I LF+ M   G+               +  R + A  LF  + 
Sbjct: 168 WNFMVSEYAKIGDFKESICLFKIMVEKGI---------------EGKRPESAFELFDKLC 212

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           ++D + W +MI GY  NG  E  L ++ +M+   +  D  +I SV+  CA   +L  G+ 
Sbjct: 213 DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKA 272

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VH  A+    +  +  S+ L+DMY KCG  D A  VF  M  RNVVSW SMI GY ++G+
Sbjct: 273 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGR 332

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
              A+ L  ++ +E +K D     S+L AC  +   + G++  D I A + +  +L    
Sbjct: 333 SDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA-NNMESNLFVCN 391

Query: 465 CMINLLGRSSDVDKAVDLIKSL-------------PHKPNSLIWSTLLSVCAMKGDIKHG 511
            ++++  +   ++ A  +  ++               KP+S   + +L  CA    ++ G
Sbjct: 392 ALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERG 451

Query: 512 E 512
           +
Sbjct: 452 K 452



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 50/311 (16%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
            +++ C     + L K + S    + +E    F  N LL  Y+K G L  A  +F+KM  
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINF-SNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 88  RDIISWNALLSAH-----------------------------------ARSGSVQDLRAL 112
           R+++SW ++++ +                                   ARSGS+ + + +
Sbjct: 315 RNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 113 FDKMPIRDSVS----YNTAIAGFANKGFSREALQVFSRM-QKD---------RFEPTDYT 158
            D +   +  S     N  +  +A  G    A  VFS M  KD           +P   T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L ACA L  L RGK+IHG I+      +  V NAL D+Y K G +  AR LFD + 
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           +++LVSW +MI+GY  +G   + I  F EM+  G+ PDEV+  +IL AC  +G ++   R
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 279 LFHVIKEKDNV 289
            F+++K   N+
Sbjct: 555 FFYIMKNDFNI 565



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 50/200 (25%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A T ++  C R   ++  K +  ++  N  E N  F+ N L+  YAK G +  A  +F  
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMESNL-FVCNALMDMYAKCGSMEAANSVFST 412

Query: 85  MPLRDIISW-------------------------------------------------NA 95
           M ++DIISW                                                 NA
Sbjct: 413 MVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +   R LFD +P +D VS+   IAG+   G+  EA+  F+ M+    EP 
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 156 DYTHVSALNACAQLLDLRRG 175
           + + +S L AC+    L +G
Sbjct: 533 EVSFISILYACSHSGLLEQG 552


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/732 (33%), Positives = 394/732 (53%), Gaps = 85/732 (11%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  RG  A +   T LV  CT++  +E  +RL  H+ +  +  +                
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTD---------------- 44

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
                      +PL       ALL  +A+ GS+ D + +F+ M I+D  ++++ I+ +A 
Sbjct: 45  -----------IPLE-----TALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIISAYAR 88

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G    A+ ++ RM  +  EP   T   AL  CA +  L  G+ IH +I+   +  +  +
Sbjct: 89  AGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVL 148

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLG 252
           +++L +MY K  E+ +AR +F+ M  RN+ S+  MIS Y++ G+  + ++LF  M ++  
Sbjct: 149 QDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA 208

Query: 253 LNPDEVTVSNILGACFQTGRID-----------------------------------DAG 277
           + P+  T + ILGA    G ++                                   +A 
Sbjct: 209 IEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEAR 268

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           ++F  +  ++ + WT+MI  Y Q+G  ++AL LF  M   DV P   S SS +++CA L 
Sbjct: 269 KVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLG 325

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ +H + V   +    + +S L+ MY +CG  DDA  VFN M TR+  S N+MI 
Sbjct: 326 ALDEGREIHHRVVEAHLASPQMETS-LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIA 384

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            + Q+G+  +AL +Y ++ QE +  D  TFVSVL AC H  L    ++ F S+   HG+ 
Sbjct: 385 AFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVV 444

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P ++HY CM+++LGRS  +  A +L++++P++ +++ W TLLS C   GD+  GE AAR 
Sbjct: 445 PLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARK 504

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           +FEL P    PY+ LSNMYAA  R++D   +R  M+ + V    A S+IEIDN++H F S
Sbjct: 505 VFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTS 564

Query: 578 EDRTHPET-------EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ----EEEKVKSICY 626
             R   +        E +   L +L++ +++AG+ P+T+ V  + Q    EEEK +S+C+
Sbjct: 565 GGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCF 624

Query: 627 HSEKLALAYCLI--KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
           HSE+LA+AY LI  K P    P+R++ + RVC DCH  +K  SDII +TI +RD NRFHH
Sbjct: 625 HSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHH 684

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D+W
Sbjct: 685 FEKGACSCGDHW 696


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/635 (36%), Positives = 373/635 (58%), Gaps = 47/635 (7%)

Query: 108 DLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +L  LF+K   R D  S+N+ IA  A  G S E+L+ FS M+K   +P   T   A+ +C
Sbjct: 33  NLTTLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSC 92

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           + L DL  GKQ H + +V     ++FV +AL DMY+K G++  AR LFD +  RN+V+W 
Sbjct: 93  SALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWT 152

Query: 227 LMISGYLKNGQPKKCIDLFQEM---------QLLGLNPDEVTVSNILGACFQT------- 270
            +I+GY++N    + + +F+E          + +G + D V + ++L AC +        
Sbjct: 153 SLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSE 212

Query: 271 ----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                       G +  + ++F  + EKD V W +MI  Y QNG
Sbjct: 213 GVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNG 272

Query: 303 KEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
              DA  +F+ ML +   + ++ ++S+++ +CA   +L  G  +H + + +G  ++++++
Sbjct: 273 LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA 332

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +++IDMYCKCG  + A   F+ M  +NV SW +MI GY  +G   EAL ++ +++   +K
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P+  TF+SVL+AC HA   E G   F+++S  + + P ++HY CM++LLGR+  + +A +
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           LIKS+  + + ++W +LL+ C +  D++  E++AR LF+L+P N G Y++L+N+YA  GR
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGR 512

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W+DV  +R  +K + + K   YS +E+  +VH F+  D+ HP+ E IY+ L +L  KLQE
Sbjct: 513 WKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQE 572

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           AG+ PN   VLHD  EEEK   +  HSEKLA+A+ ++    G T I ++KN+RVCGDCH 
Sbjct: 573 AGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGST-IHVIKNLRVCGDCHT 631

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +K  S I+ R II+RD+ RFHHF  G CSC D W
Sbjct: 632 VIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 184/407 (45%), Gaps = 71/407 (17%)

Query: 33  CTRVNDVELAKRLQSHMD-LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C+ + D+   K  Q+H   L F   +  F+ + L+  Y+K GKL  AR LFD++P R+I+
Sbjct: 92  CSALFDLNSGK--QAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIV 149

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           +W +L++ + ++    +   +F +     S      +      G S +++ +        
Sbjct: 150 TWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEV------GTSVDSVAM-------- 195

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
                   +S L+AC+++ +    + +HG  +   L   + V N L D YAK GE+  +R
Sbjct: 196 --------ISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSR 247

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF-- 268
            +FD M  +++VSWN MI+ Y +NG      ++F  M +  G   +EVT+S +L AC   
Sbjct: 248 KVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHE 307

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G+ + A   F  +KEK+   WT MI
Sbjct: 308 GALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMI 367

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-----QVVHGKAV 350
            GY  +G   +AL +F +M+   V+P+  +  SV+++C+    L  G      + H   V
Sbjct: 368 AGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNV 427

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMI 396
             GV+        ++D+  + G   +A+ +   M   R+ V W S++
Sbjct: 428 EPGVEH----YGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLL 470



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 128/251 (50%), Gaps = 19/251 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRF 152
           N LL A+A+ G V   R +FD M  +D VS+N+ IA +A  G S +A +VF  M K    
Sbjct: 231 NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGG 290

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +  + T  + L ACA    LR G  +H +++      NV +  ++ DMY K G+ + AR 
Sbjct: 291 KYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARN 350

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
            FD M  +N+ SW  MI+GY  +G  ++ +D+F +M   G+ P+ +T  ++L AC   G 
Sbjct: 351 AFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGF 410

Query: 273 IDDAGRLFHVIKEKDNV--------CWTTMI--VGYTQNGKEEDALILFNEMLSEDVRPD 322
           +++  R F+ +  + NV        C   ++   GY +          +N + S  VR D
Sbjct: 411 LEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEA--------YNLIKSMKVRRD 462

Query: 323 KFSISSVVSSC 333
                S++++C
Sbjct: 463 FVLWGSLLAAC 473



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + ++I   +++  + + G  +  R  FD M  ++  S+   IAG+   GF+REAL VF +
Sbjct: 326 VNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQ 385

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M     +P   T +S L AC+    L  G +  +      N+   V     + D+  + G
Sbjct: 386 MIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAG 445

Query: 206 EIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDL--FQEMQLLGLNPDEVTVSN 262
            I +A  L   M   R+ V W  +++      +  K ++L      +L  L+P       
Sbjct: 446 YIKEAYNLIKSMKVRRDFVLWGSLLAA----CRIHKDVELAEISARELFKLDPSNCGYYV 501

Query: 263 ILGACF-QTGRIDDAGRLFHVIKEK 286
           +L   +   GR  D  R+  ++K++
Sbjct: 502 LLANIYADAGRWKDVERMRILVKDR 526


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/533 (41%), Positives = 335/533 (62%), Gaps = 31/533 (5%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           ++F  N +   Y +  ++  AR LF+RM  R++VSWN M+SGY +NG   +  ++F +M 
Sbjct: 25  DLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGFVDEAREIFYKMP 84

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV--------------------------I 283
           L     + ++ + +L A  Q GRI+DA RLF                            +
Sbjct: 85  L----KNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNM 140

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            ++D++ W+ MI GY+QNG  E+AL  F EM  +  R ++ S +  +S+C+ +A+L  G+
Sbjct: 141 PQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGR 200

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H + V  G      V +AL+ MYCKCG  D+A   F  +  ++VVSWN+MI+GYA++G
Sbjct: 201 QLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHG 260

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              EAL +++ +    ++PD  T VSVL+AC HA L ++G  +F S++  +GIT  L HY
Sbjct: 261 FGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHY 320

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  +++A +L+K++P +P++  W  LL    + G+ + GE AA+ +FE+EP
Sbjct: 321 TCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEMEP 380

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            N+G YI+LS +YAA GRW D   +R  M++K VKK   YSW+E+ NK+H F   D +HP
Sbjct: 381 HNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSHP 440

Query: 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
            T+ IY  L ++  KL++ G+  +T LV HD +EEEKV  + YHSEKLA+AY ++  P G
Sbjct: 441 HTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPAG 500

Query: 644 VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             PIR++KN+RVC DCH  +K+ S I+GR IILRD++RFH+F GG+CSC+D W
Sbjct: 501 -RPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 165/321 (51%), Gaps = 47/321 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL------------- 109
           N +L  YA++G +  AR++F KMPL++ ISWN LL+A+ ++G ++D              
Sbjct: 61  NAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLV 120

Query: 110 -------------RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD--RFEP 154
                        R LFD MP RDS+S++  IAG++  G S EAL  F  MQ+D  R   
Sbjct: 121 SWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           + +T   AL+ C+ +  L  G+Q+H ++V        +V NAL  MY K G ID+AR  F
Sbjct: 181 SSFT--CALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAF 238

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
             +  +++VSWN MI GY ++G  ++ + +F+ M+  G+ PD+ T+ ++L AC   G +D
Sbjct: 239 QEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVD 298

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYT-------QNGKEEDALILFNEMLSEDVRPDKFSIS 327
                F+ +     +  T  +V YT       + G+ E+A  L   M  E   PD  +  
Sbjct: 299 QGSEYFYSMNRDYGI--TAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFE---PDAATWG 353

Query: 328 SVVSSCAKLASLYHGQVVHGK 348
           +++      AS  HG    G+
Sbjct: 354 ALLG-----ASRIHGNTELGE 369



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 177/365 (48%), Gaps = 50/365 (13%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y ++ K   ARDLFDKMP RD+ SWN +L+ + R+  ++  RALF++MP RD VS+N  +
Sbjct: 5   YLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAML 64

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G+A  GF  EA ++F +M          +    L A  Q   +   K    ++    + 
Sbjct: 65  SGYAQNGFVDEAREIFYKMPL----KNGISWNGLLAAYVQNGRIEDAK----RLFESKMD 116

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
             +   N L      GG + K R LFD M  R+ +SW+ MI+GY +NG  ++ +  F EM
Sbjct: 117 WTLVSWNCLM-----GGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEM 171

Query: 249 Q--LLGLNPDEV-----TVSNI----LG---------ACFQT---------------GRI 273
           Q     LN         T SNI    LG         A +QT               G I
Sbjct: 172 QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSI 231

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D+A   F  I EKD V W TMI GY ++G  E+AL +F  M +  +RPD  ++ SV+++C
Sbjct: 232 DEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAAC 291

Query: 334 AKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVS 391
           +    +  G +  +      G+   L+  + ++D+  + G  ++A  +   MP   +  +
Sbjct: 292 SHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAAT 351

Query: 392 WNSMI 396
           W +++
Sbjct: 352 WGALL 356



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 109/270 (40%), Gaps = 61/270 (22%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++T  +  C+ +  +EL ++L   +    Y+    ++ N LL  Y K G +  ARD F +
Sbjct: 182 SFTCALSTCSNIAALELGRQLHCRLVKAGYQTGW-YVGNALLAMYCKCGSIDEARDAFQE 240

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  +D++SWN ++  +AR                                GF  EAL VF
Sbjct: 241 ILEKDVVSWNTMIHGYAR-------------------------------HGFGEEALTVF 269

Query: 145 SRMQKDRFEPTDYTHVSALNAC--AQLLD--------LRRGKQIHGKIVVGNLGGNVFVR 194
             M+     P D T VS L AC  A L+D        + R   I  K+V           
Sbjct: 270 ELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLV---------HY 320

Query: 195 NALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP---KKCIDLFQEMQL 250
             + D+  + G++++A+ L   M    +  +W  ++     +G     +K   +  EM+ 
Sbjct: 321 TCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEME- 379

Query: 251 LGLNPDEVTVSNILGACF-QTGRIDDAGRL 279
               P    +  +L   +  +GR  DAG++
Sbjct: 380 ----PHNSGMYILLSKLYAASGRWSDAGKM 405


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/602 (39%), Positives = 351/602 (58%), Gaps = 58/602 (9%)

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           ++ R LFDKMP  +++S+N  ++G+   G   EA +VF +M +                 
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPER---------------- 54

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
                                  NV    A+   Y + G I++A  LF RM  RN+VSW 
Sbjct: 55  -----------------------NVVSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWT 91

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           +M+ G +++G+  +   LF  M +     D V  +N++      GR+ +A  +F  + ++
Sbjct: 92  VMLGGLIEDGRVDEARQLFDMMPV----KDVVASTNMIDGLCSEGRLIEAREIFDEMPQR 147

Query: 287 DNVCWTTMIVG-------------YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           + V WT+MI G             Y + G E +AL LF+ M  E VRP   S+ SV+S C
Sbjct: 148 NVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVC 207

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             LASL HG+ VH + V    D D+ VSS LI MY KCG    A  VF+   ++++V WN
Sbjct: 208 GSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWN 267

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           S+I GYAQ+G   +AL ++  +   ++ PD  TF+ VLSAC +    + G   F+S+ + 
Sbjct: 268 SIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK 327

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + + P  +HYACM++LLGR+  +++A++LI+++P + ++++W  LL  C    ++   E+
Sbjct: 328 YQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEI 387

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA+ L +LEP NAGPYI+LSN+Y++  RW+DV  +R +M++KN++K    SWIE+D KVH
Sbjct: 388 AAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVH 447

Query: 574 KFVSEDRT-HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
            F     T HPE E+I ++L KL   L+EAG+ P+   V+HD  EEEKV S+  HSEKLA
Sbjct: 448 IFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLA 507

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +AY L+K P G+ PIR+MKN+RVCGD H  +K  + + GR IILRD+NRFHHF  G CSC
Sbjct: 508 VAYGLLKVPEGM-PIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSC 566

Query: 693 KD 694
            D
Sbjct: 567 SD 568



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 151/281 (53%), Gaps = 21/281 (7%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G++  AR LFD MP++D+++   ++      G + + R +FD+MP R+ V++ + I+G
Sbjct: 99  EDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISG 158

Query: 131 -------------FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
                        +  KGF  EAL +FS MQ++   P+  + +S L+ C  L  L  G+Q
Sbjct: 159 EKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQ 218

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H ++V      +++V + L  MY K G++  A+ +FDR +++++V WN +I+GY ++G 
Sbjct: 219 VHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGF 278

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWT 292
            +K +++F +M    + PDE+T   +L AC  TG++ +   +F  +K K  V      + 
Sbjct: 279 GEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYA 338

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            M+    + GK  +A+ L   M    V  D     +++ +C
Sbjct: 339 CMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGALLGAC 376



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 173/398 (43%), Gaps = 62/398 (15%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR LFDKMP  + ISWN L+S + ++G + + R +FDKMP R+ VS+   I G+  +G  
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EA  +F RM     E    +    L    +   +   +Q+   + V     +V     +
Sbjct: 73  EEAELLFWRMP----ERNVVSWTVMLGGLIEDGRVDEARQLFDMMPV----KDVVASTNM 124

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG-------------YLKNGQPKKCIDL 244
            D     G + +AR +FD M  RN+V+W  MISG             Y + G   + + L
Sbjct: 125 IDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALAL 184

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           F  MQ  G+ P   +V ++L  C                                    +
Sbjct: 185 FSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIK 244

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G +  A R+F     KD V W ++I GY Q+G  E AL +F++M S  + PD+ +   V
Sbjct: 245 CGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGV 304

Query: 330 VSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR- 387
           +S+C+    +  G ++         VD      + ++D+  + G  ++A  +   MP   
Sbjct: 305 LSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEA 364

Query: 388 NVVSWNSMING-YAQNGQDLEALALYDKLLQENLKPDS 424
           + + W +++         DL  +A   KLLQ  L+P++
Sbjct: 365 DAIVWGALLGACRTHKNLDLAEIAA-KKLLQ--LEPNN 399



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 59/339 (17%)

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           +   FQ  R  +A +LF  + E + + W  ++ GY QNG   +A  +F++M   +V    
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV---- 56

Query: 324 FSISSVVSSCAKLASLYHGQVVHGK---------AVVLG-------VDD----------- 356
            S ++++    +   +   +++  +          V+LG       VD+           
Sbjct: 57  VSWTAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK 116

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING-------------YAQNG 403
           D++ S+ +ID  C  G   +A  +F+ MP RNVV+W SMI+G             Y + G
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKG 176

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDH 462
            +LEALAL+  + +E ++P   + +SVLS C      + G Q H   + +   I    D 
Sbjct: 177 FELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDI----DI 232

Query: 463 Y--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           Y  + +I +  +  D+  A  +      K + ++W+++++  A  G    GE A     +
Sbjct: 233 YVSSVLITMYIKCGDLVTAKRVFDRFSSK-DIVMWNSIIAGYAQHG---FGEKALEVFHD 288

Query: 521 LEPINAGP-YIMLSNMYAAC---GRWEDVASIRSSMKSK 555
           +   +  P  I    + +AC   G+ ++   I  SMKSK
Sbjct: 289 MFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSK 327



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 37/134 (27%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           ++S  D++ Y      + + L+  Y K G L  A+ +FD+   +DI+ WN++        
Sbjct: 224 VRSQFDIDIY------VSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSI-------- 269

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
                                  IAG+A  GF  +AL+VF  M      P + T +  L+
Sbjct: 270 -----------------------IAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLS 306

Query: 165 ACAQLLDLRRGKQI 178
           AC+    ++ G +I
Sbjct: 307 ACSYTGKVKEGLEI 320


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 381/726 (52%), Gaps = 72/726 (9%)

Query: 10  AIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           AID  +S    G    +  Y  ++  C+ +  +E    + SH  + F   +  F+   L+
Sbjct: 93  AIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM-FGLESDVFVCTALV 151

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
            FYAK G L  A+ LF  M  RD+++WNA+                              
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAM------------------------------ 181

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            IAG +  G   +A+Q+  +MQ++   P   T V  L    +   L  GK +HG  V  +
Sbjct: 182 -IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
               V V   L DMYAK   +  AR +FD M  RN VSW+ MI GY+ +   K+ ++LF 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFD 300

Query: 247 EMQLL-GLNPDEVTVSNILGAC-----------------------------------FQT 270
           +M L   ++P  VT+ ++L AC                                    + 
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKC 360

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G IDDA R F  +  KD+V ++ ++ G  QNG    AL +F  M    + PD  ++  V+
Sbjct: 361 GVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVL 420

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +C+ LA+L HG   HG  +V G   D L+ +ALIDMY KCG    A  VFN M   ++V
Sbjct: 421 PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIV 480

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+MI GY  +G  +EAL L+  LL   LKPD  TF+ +LS+C H+ L   G+  FD++
Sbjct: 481 SWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAM 540

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S    I P ++H  CM+++LGR+  +D+A   I+++P +P+  IWS LLS C +  +I+ 
Sbjct: 541 SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIEL 600

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE  ++ +  L P + G +++LSN+Y+A GRW+D A IR + K   +KK    SWIEI+ 
Sbjct: 601 GEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH FV  D++H +   I  +L +L+ +++  G+      V  D +EEEK + + YHSEK
Sbjct: 661 IVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEK 720

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ ++    G  PI + KN+RVCGDCH  +KF + I  R I +RD+NRFHHF  G C
Sbjct: 721 LAIAFGILNLKAG-RPILVTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTC 779

Query: 691 SCKDNW 696
           +C D W
Sbjct: 780 NCGDFW 785



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 214/454 (47%), Gaps = 68/454 (14%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C +   +  AK++  H   N    +++ LH +L   Y    ++  AR LFD++
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLH-KLTRLYLSCNQVVLARRLFDEI 69

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P   +I WN ++ A+A +G        FD                         A+ ++ 
Sbjct: 70  PNPSVILWNQIIRAYAWNGP-------FDG------------------------AIDLYH 98

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M      P  YT+   L AC+ LL +  G +IH    +  L  +VFV  AL D YAK G
Sbjct: 99  SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL- 264
            + +A+ LF  M++R++V+WN MI+G    G     + L  +MQ  G+ P+  T+  +L 
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 265 -------------------------GACFQTGRID---------DAGRLFHVIKEKDNVC 290
                                    G    TG +D          A ++F V+  ++ V 
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS 278

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           W+ MI GY  +   ++AL LF++M+ +D + P   ++ SV+ +CAKL  L  G+ +H   
Sbjct: 279 WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYI 338

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           + LG   D+L+ + L+ MY KCGV DDA   F+ M  ++ VS++++++G  QNG    AL
Sbjct: 339 IKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +++  +    + PD  T + VL AC H    + G
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 179/388 (46%), Gaps = 40/388 (10%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +Y H+  L AC Q   L   K+IH   +      +  V + LT +Y    ++  AR LFD
Sbjct: 10  NYLHL--LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            + N +++ WN +I  Y  NG     IDL+  M  LG+ P++ T   +L AC        
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G + +A RLF  +  +D V W  MI G + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G  +DA+ L  +M  E + P+  +I  V+ +  +  +L HG+ +HG  V    D+ ++V
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-LQEN 419
            + L+DMY KC     A  +F++M  RN VSW++MI GY  +    EAL L+D++ L++ 
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           + P   T  SVL AC       RG+     I  + G    +     ++++  +   +D A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKL-GXVLDILLGNTLLSMYAKCGVIDDA 366

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           +     +  K +S+ +S ++S C   G+
Sbjct: 367 IRFFDXMNPK-DSVSFSAIVSGCVQNGN 393


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/752 (31%), Positives = 393/752 (52%), Gaps = 112/752 (14%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E Y  ++  C ++ ++ L  ++ + + +N  +    FL +RLL  Y ++G +  AR +FD
Sbjct: 11  EIYASILQKCRKLYNLRLGFQVHAQLVVNGVDV-CEFLGSRLLEVYCQTGCVEDARRMFD 69

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           KM  R++ SW A++  +   G  +                               E +++
Sbjct: 70  KMSERNVFSWTAIMEMYCGLGDYE-------------------------------ETIKL 98

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M  +   P  +       AC++L + R GK ++  ++     GN  V+ ++ DM+ K
Sbjct: 99  FYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIK 158

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D AR  F+ +  +++  WN+M+SGY   G+ KK +++F++M L G+ P+ +T+++ 
Sbjct: 159 CGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASA 218

Query: 264 LGAC-----FQTGR-------------------------------IDDAGRLFHVIKEKD 287
           + AC      + GR                               ++ A R F +IK+ D
Sbjct: 219 VSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTD 278

Query: 288 NVCWTTM--IVGYT-----------------------------------------QNGKE 304
            V W  M  + G+T                                         Q+G+ 
Sbjct: 279 LVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRS 338

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +AL L  EM   +V  +  ++ S + +C+KLA+L  G+ +H   +  G+D    + ++L
Sbjct: 339 VNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSL 398

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY +CG    +  +F++MP R++VSWN MI+ Y  +G  ++A+ L+ +     LKP+ 
Sbjct: 399 IDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNH 458

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TF ++LSAC H+ L E G  +F  +   + + P+++ YACM++LL R+   ++ ++ I+
Sbjct: 459 ITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIE 518

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +PN+ +W +LL  C +  +    E AAR+LFELEP ++G Y++++N+Y+A GRWED
Sbjct: 519 KMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWED 578

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
            A IR  MK + V K    SWIE+  K+H FV  D +HP  E I  ++  L   ++E G+
Sbjct: 579 AAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGY 638

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T  VL D  E+EK  S+C HSEK+ALA+ LI    G TP+RI+KN+RVCGDCH   K
Sbjct: 639 VPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAG-TPLRIIKNLRVCGDCHSATK 697

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S +  R II+RD+ RFHHFV G CSC D W
Sbjct: 698 FISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 343/598 (57%), Gaps = 36/598 (6%)

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
           A ++SG +     +FDK+P  D+  YNT   G+     +R  + ++SRM      P  +T
Sbjct: 63  AISKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFT 122

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           +   + AC     +  GKQIH  ++    G + F  N L  MY     +++AR +FD M 
Sbjct: 123 YPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMP 182

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            R++VSW  +I+GY                                    Q G +D A  
Sbjct: 183 QRDVVSWTSLITGY-----------------------------------SQWGFVDKARE 207

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F ++ E+++V W  MI  Y Q+ +  +A  LF+ M  E+V  DKF  +S++S+C  L +
Sbjct: 208 VFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGA 267

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +HG     G++ D  +++ +IDMYCKCG  + A  VFN +P + + SWN MI G
Sbjct: 268 LEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGG 327

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            A +G+   A+ L+ ++ +E + PD  TFV+VLSAC H+ L E G+++F  ++ V G+ P
Sbjct: 328 LAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKP 387

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            ++H+ CM++LLGR+  +++A  LI  +P  P++ +   L+  C + G+ + GE   + +
Sbjct: 388 GMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKV 447

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            ELEP N+G Y++L+N+YA+ GRWEDVA +R  M  + VKK   +S IE ++ V +F++ 
Sbjct: 448 IELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAG 507

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
            R HP+ + IY +L ++++ ++  G+ P+T  VLHD  EEEK   + YHSEKLA+A+ L+
Sbjct: 508 GRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLL 567

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K   G T +RI KN+R+C DCH   K  S +  R II+RD NRFHHF  G CSCKD W
Sbjct: 568 KTKPGET-LRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 180/369 (48%), Gaps = 10/369 (2%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C     +E  K++ +H+ L F      F  N L+H Y     L  AR +FD M
Sbjct: 123 YPPLIRACCIDYAIEEGKQIHAHV-LKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P RD++SW +L++ +++ G V   R +F+ MP R+SVS+N  IA +       EA  +F 
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           RM+ +      +   S L+AC  L  L +GK IHG I    +  +  +   + DMY K G
Sbjct: 242 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 301

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            ++KA  +F+ +  + + SWN MI G   +G+ +  I+LF+EM+   + PD +T  N+L 
Sbjct: 302 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 361

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           AC  +G +++    F  + E   +      +  M+    + G  E+A  L NEM    V 
Sbjct: 362 ACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM---PVN 418

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD   + ++V +C    +   G+ + GK V+     +      L ++Y   G  +D   V
Sbjct: 419 PDAGVLGALVGACRIHGNTELGEQI-GKKVIELEPHNSGRYVLLANLYASAGRWEDVAKV 477

Query: 381 FNMMPTRNV 389
             +M  R V
Sbjct: 478 RKLMNDRGV 486



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 113/244 (46%), Gaps = 18/244 (7%)

Query: 330 VSSCAKLASL--YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           + SC+ +A L  YH Q++    + L  D+D +          K G  + A  VF+ +P  
Sbjct: 27  LDSCSTMAELKQYHSQIIR---LGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHP 83

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNH 446
           +   +N++  GY +       + +Y ++L +++ P+ FT+  ++ AC      E G Q H
Sbjct: 84  DAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIH 143

Query: 447 FDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
              +    G    SL++   +I++      +++A  +  ++P + + + W++L++  +  
Sbjct: 144 AHVLKFGFGADGFSLNN---LIHMYVNFQSLEQARRVFDNMPQR-DVVSWTSLITGYSQW 199

Query: 506 GDIKHGEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV--KKFAA 562
           G +      AR +FEL P  N+  +  +   Y    R  +  ++   M+ +NV   KF A
Sbjct: 200 GFVD----KAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 255

Query: 563 YSWI 566
            S +
Sbjct: 256 ASML 259


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/642 (36%), Positives = 366/642 (57%), Gaps = 45/642 (7%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            + N ++H Y + G    AR  FD +P++D ++W  ++S  A+ G + D   L    P R
Sbjct: 141 LVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRHSPAR 200

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           + +S+   I+G++  G + EA+  F+ M  D  EP + T +  L+ACAQL DL  G+ +H
Sbjct: 201 NVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLH 260

Query: 180 GKIVVGNLG----GNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLK 234
              +VG  G    G + V  AL DMYAK G+I +A  +FD +   R   SWN MI GY K
Sbjct: 261 K--LVGEKGMLMSGKLVV--ALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCK 316

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                               G +D A  LF  ++++D V + ++
Sbjct: 317 -----------------------------------LGHVDVARYLFDQMEDRDLVTFNSL 341

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I GY   G+  +AL+LF +M   D+R D F++ S++++CA L +L  G+ +H       V
Sbjct: 342 ITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLV 401

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           + D+ + +AL+DMY KCG  ++A  VF  M  R+V +W++MI G A NG    AL  +  
Sbjct: 402 EVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFW 461

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  +  +P+S T++++L+AC H+ L + G+ +F+ +  +H I P ++HY CMI+LLGRS 
Sbjct: 462 MKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSG 521

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +D+A+DL++++P +PN++IW+++LS C +  D      AA HL +LEP     Y+ L N
Sbjct: 522 LLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYN 581

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +Y    +WED + IR  M+ + VKK A YS I +  +VHKF+  DRTHP+   I   + +
Sbjct: 582 IYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEE 641

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           + ++L+  G+SP T  +  D  EEEK  ++  HSEK+A+A+ LI     + P+ I+KN+R
Sbjct: 642 ITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNL-PLHIIKNLR 700

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VC DCH  +K  S I  R II+RD +RFHHF  G CSC D W
Sbjct: 701 VCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 111/263 (42%), Gaps = 40/263 (15%)

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAV 350
           T +   +  +   E  LIL+  M    V  D F+   +   CA+  A +   Q++H    
Sbjct: 72  TALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACF 131

Query: 351 VLGVDDDL-LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM-------------- 395
              +   + LVS+ +I MY + G+  DA   F+ +P ++ V+W ++              
Sbjct: 132 RTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAW 191

Query: 396 -----------------INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
                            I+GY++ G+  EA+  ++ +L + ++PD  T + +LSAC    
Sbjct: 192 CLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLK 251

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
               G++    +    G+  S      +I++  +  D+ +A ++  +L        W+ +
Sbjct: 252 DLVFGRS-LHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAM 310

Query: 499 LSVCAMKGDIKHGEM-AARHLFE 520
           +      G  K G +  AR+LF+
Sbjct: 311 ID-----GYCKLGHVDVARYLFD 328


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/688 (35%), Positives = 378/688 (54%), Gaps = 83/688 (12%)

Query: 91   ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
            I  N LL+ +A+S +++    +F+++P  D  S+   I+GFA  G S + L +F++MQ  
Sbjct: 322  IRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQ 381

Query: 151  RFEPTDYTHVSALNACAQLL-DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG----- 204
               P  +T    L +C+  + D R GK IHG I+   L  +  + N++ D Y K      
Sbjct: 382  GVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGY 441

Query: 205  --------GEIDKARW------------------LFDRMNNRNLVSWNLMISGYLKNGQP 238
                     E D   W                  LF ++  ++  SWN MI G ++NG  
Sbjct: 442  AEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCE 501

Query: 239  KKCIDLFQEMQLLGLNPDEVTVS---------NILG-------ACFQTGRIDD------- 275
            +  ++L  +M   G   +++T S         ++LG          + G +DD       
Sbjct: 502  RVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSL 561

Query: 276  ------------AGRLF-HVIKEK--------------DNVCWTTMIVGYTQNGKEEDAL 308
                        A  +F H+ +E               ++V W++M+ GY QNG+ EDAL
Sbjct: 562  IDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDAL 621

Query: 309  ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
              F+ M+   V  DKF+++SVVS+CA    L  G+ VHG    +G   D+ + S++IDMY
Sbjct: 622  KTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMY 681

Query: 369  CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
             KCG  +DAW +FN    RNVV W SMI+G A +GQ  EA+ L++ ++ E + P+  +FV
Sbjct: 682  VKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFV 741

Query: 429  SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
             VL+AC HA L E G  +F  +  V+GI P  +H+ CM++L GR+  +++  + I +   
Sbjct: 742  GVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAI 801

Query: 489  KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
               S +W + LS C +  +I+ G    + L ELEP +AGPYI+ S++ A   RWE+ A I
Sbjct: 802  SKLSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKI 861

Query: 549  RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
            RS M+ + VKK  + SWI++ N+VH FV  DR+HP+   IY  L +LI +L+E G+S + 
Sbjct: 862  RSLMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDV 921

Query: 609  KLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
              V+ D ++E++   + YHSEKLA+AY +I    G TPIR+MKN+RVC DCH F+K+AS+
Sbjct: 922  TPVMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPG-TPIRVMKNLRVCIDCHNFIKYASE 980

Query: 669  IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            ++GR II+RD +RFHHF  G+CSC D W
Sbjct: 981  LLGREIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 148/509 (29%), Positives = 225/509 (44%), Gaps = 118/509 (23%)

Query: 56  PNTTFLH-------------NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHAR 102
           PN+  LH             N LL+ YAKS  L  A  +F+++P  D+ SW  L+S  AR
Sbjct: 305 PNSEVLHAKLIKNGCVGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFAR 364

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
            G                                S + L +F++MQ     P  +T    
Sbjct: 365 IG-------------------------------LSADVLGLFTKMQDQGVCPNQFTLSIV 393

Query: 163 LNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           L +C+  + D R GK IHG I+   L  +  + N++ D Y K      A  LF  M  ++
Sbjct: 394 LKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKD 453

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281
            VSWN+M+S YL+ G  +K +DLF+++                                 
Sbjct: 454 TVSWNIMMSSYLQIGDMQKSVDLFRQL--------------------------------- 480

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
               KD   W TMI G  +NG E  AL L  +M++     +K + S  +   + L+ L  
Sbjct: 481 --PGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGL 538

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN------------- 388
           G+ +H + + +GV DD  V ++LIDMYCKCG  + A  +F  +P  +             
Sbjct: 539 GKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAV 598

Query: 389 --VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
              VSW+SM++GY QNG+  +AL  +  ++   ++ D FT  SV+SAC  A + E G+  
Sbjct: 599 VESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQ- 657

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD--------LIKSLPHKPNSLIWSTL 498
                 VHG    + H    +++   SS +D  V         LI +     N ++W+++
Sbjct: 658 ------VHGYIQKIGH---GLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSM 708

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +S CA+ G    G  A R LFEL  IN G
Sbjct: 709 ISGCALHG---QGREAVR-LFELM-INEG 732



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 183/390 (46%), Gaps = 52/390 (13%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           + VND  + K +   +  N  + +   L+N +L +Y K     YA  LF  M  +D +SW
Sbjct: 399 SNVNDSRIGKGIHGWILRNGLDLDAV-LNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSW 457

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N ++S++ + G +Q    LF ++P +D+ S+NT I G    G  R AL++  +M      
Sbjct: 458 NIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPA 517

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T   AL   + L  L  GKQIH +++   +  + FVRN+L DMY K GE++KA  +
Sbjct: 518 FNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVI 577

Query: 214 FDRMNNRN---------------LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           F  +   +                VSW+ M+SGY++NG+ +  +  F  M    +  D+ 
Sbjct: 578 FKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKF 637

Query: 259 TVSNILGAC-----------------------------------FQTGRIDDAGRLFHVI 283
           T+++++ AC                                    + G ++DA  +F+  
Sbjct: 638 TLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQA 697

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG- 342
           K+++ V WT+MI G   +G+  +A+ LF  M++E + P++ S   V+++C+    L  G 
Sbjct: 698 KDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGC 757

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +       V G+       + ++D+Y + G
Sbjct: 758 KYFRLMREVYGIRPGAEHFTCMVDLYGRAG 787



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 13/130 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   ++++  + + GS+ D   +F++   R+ V + + I+G A  G  REA+++F  M 
Sbjct: 670 DVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMI 729

Query: 149 KDRFEPTDYTHVSALNAC--AQLLD-----LRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +   P + + V  L AC  A LL+      R  ++++G       G   F    + D+Y
Sbjct: 730 NEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGI----RPGAEHF--TCMVDLY 783

Query: 202 AKGGEIDKAR 211
            + G +++ +
Sbjct: 784 GRAGRLNEIK 793


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/691 (33%), Positives = 392/691 (56%), Gaps = 10/691 (1%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S    AT+    +L+  C ++  +   K++  ++ + F   + T + N ++  Y+++ 
Sbjct: 223 MQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYV-IRFGRVSNTSICNSIVSMYSRNN 281

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIA 129
           +L  AR +FD     ++ SWN+++S++A +G +     LF +M       D +++N+ ++
Sbjct: 282 RLELARAVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLS 341

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G   +G     L     +Q   F+P   +  SAL A  +L     GK+IHG I+   L  
Sbjct: 342 GHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEY 401

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V+V  +L DMY K   ++KA  +F    N+N+ +WN +ISGY   G       L  +M+
Sbjct: 402 DVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMK 461

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIVGYTQNGKEE 305
             G+  D VT ++++     +G  ++A  + + IK      + V WT MI G  QN    
Sbjct: 462 EEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYT 521

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           DAL  F++M  E+V+P+  +IS+++ +CA  + L  G+ +H  ++  G  DD+ +++ALI
Sbjct: 522 DALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALI 581

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY K G    A  VF  +  + +  WN M+ GYA  G   E   L+D + +  ++PD+ 
Sbjct: 582 DMYSKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAI 641

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF ++LS C ++ L   G  +FDS+   + I P+++HY+CM++LLG++  +D+A+D I +
Sbjct: 642 TFTALLSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHA 701

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P K ++ IW  +L+ C +  DIK  E+AAR+LF LEP N+  Y+++ N+Y+   RW DV
Sbjct: 702 MPQKADASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDV 761

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
             ++ SM +  VK    +SWI++   +H F +E ++HPE   IY +L +LI ++++ G+ 
Sbjct: 762 ERLKESMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYV 821

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+T  V  +  + EK K +  H+EKLA+ Y L+K   G TPIR++KN R+C DCH   K+
Sbjct: 822 PDTNCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGG-TPIRVVKNTRICQDCHTAAKY 880

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S    R I LRD  RFHHF+ G CSC D W
Sbjct: 881 ISLARNREIFLRDGGRFHHFMNGECSCNDRW 911



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 217/470 (46%), Gaps = 42/470 (8%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL++ + +   +     +FD+ P+++   +NT +          +AL++  RMQ    + 
Sbjct: 171 ALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKA 230

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           TD T V  L AC +L  L  GKQIHG ++      N  + N++  MY++   ++ AR +F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVF 290

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D   + NL SWN +IS Y  NG      DLF+EM+   + PD +T               
Sbjct: 291 DSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIIT--------------- 335

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
                           W +++ G+   G  E+ L     + S   +PD  SI+S + +  
Sbjct: 336 ----------------WNSLLSGHLLQGSYENVLTNIRSLQSAGFKPDSCSITSALQAVI 379

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           +L     G+ +HG  +   ++ D+ V ++L+DMY K    + A  VF+    +N+ +WNS
Sbjct: 380 ELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKNDCLEKAEVVFHHTKNKNICAWNS 439

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I+GY   G    A  L  ++ +E +K D  T+ S++S    +   E      + I ++ 
Sbjct: 440 LISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLVSGYSMSGCSEEALAVINRIKSL- 498

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
           G+TP++  +  MI+   ++ +   A+     +     KPNS   STLL  CA    +K G
Sbjct: 499 GLTPNVVSWTAMISGCCQNENYTDALQFFSQMQEENVKPNSTTISTLLRACAGPSLLKKG 558

Query: 512 E----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E     + +H F  +   A   I   +MY+  G+ +    +  ++K K +
Sbjct: 559 EEIHCFSMKHGFVDDIYIATALI---DMYSKGGKLKVAHEVFRNIKEKTL 605



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 133/303 (43%), Gaps = 24/303 (7%)

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-NGKEEDALILFNEMLSEDVRPDKFSI 326
            + G  + A ++F V   ++ + W + +  +    G   + L +F E+  + V+ D  ++
Sbjct: 75  LEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEILEVFKELHDKGVKFDSKAL 134

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           + V+  C  L  L+ G  VH   +  G   D+ +S ALI++Y KC   D A  VF+  P 
Sbjct: 135 TVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPL 194

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           +    WN+++    ++ +  +AL L  ++   + K    T V +L AC        G+  
Sbjct: 195 QEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQ- 253

Query: 447 FDSISAVHGITPSLDHYA------CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                 +HG        +       ++++  R++ ++ A  +  S     N   W++++S
Sbjct: 254 ------IHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVFDS-TEDHNLASWNSIIS 306

Query: 501 VCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAAC----GRWEDVASIRSSMKSK 555
             A+ G +      A  LF E+E  +  P I+  N   +     G +E+V +   S++S 
Sbjct: 307 SYAVNGCLN----GAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNIRSLQSA 362

Query: 556 NVK 558
             K
Sbjct: 363 GFK 365



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 30/170 (17%)

Query: 345 VHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
           +H + + +    +L+ +  +++  Y + G  + A  VF +   RN + WNS +  +A  G
Sbjct: 50  LHAQMIKMPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFG 109

Query: 404 QDL-EALALYDKLLQENLKPDSFTFVSVLSACL-----------HADLFERGQNHFDSIS 451
            D  E L ++ +L  + +K DS     VL  CL           HA L +RG        
Sbjct: 110 GDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQ------ 163

Query: 452 AVHGITPSLD-HYAC-MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
                   +D H +C +INL  +   +D+A  +    P + +  +W+T++
Sbjct: 164 --------VDVHLSCALINLYEKCLGIDRANQVFDETPLQED-FLWNTIV 204


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 260/686 (37%), Positives = 385/686 (56%), Gaps = 66/686 (9%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
            F  N ++  YA+  +L  AR+LF  M   RD++SW  L++ +AR   +++  ALF +MP
Sbjct: 104 AFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRMP 163

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRM--QKDRFEPTDYTHVSALNACAQLLDLRRG 175
           + D+V+  + + G+A+ G   EA ++F R+    DR    D T  +A+ A         G
Sbjct: 164 LWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDR----DATACNAMIAAY-------G 212

Query: 176 KQIHGKIVVGNLGGNVFVRNA-----LTDMYAKGGEIDKARWLFDRMNNRN--------- 221
           K     +  G L   + +RNA     L   YA+ G +D A+  FDRM  R+         
Sbjct: 213 KNARVDLAEG-LFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTA 271

Query: 222 ----------------------LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV- 258
                                 +++WN ++ GY + G   +   LF  M+   +    V 
Sbjct: 272 VLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVA 331

Query: 259 -TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
            T+ N+ G C   GR+DDA R+   +  + +V WT MI  Y QNG   +A+ LF  M  E
Sbjct: 332 GTLVNLYGKC---GRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLE 388

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDD 376
              P   ++ SVV SCA L +L  G+ +H +     +    L++ +A+I MY KCG  + 
Sbjct: 389 GAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLEL 448

Query: 377 AWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSA 433
           A  VF  +P  TR+VV+W +MI  YAQNG   EA+ L+ +++ +   +P+  TF+SVLSA
Sbjct: 449 AREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSA 508

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---P 490
           C H    E+   HF S+    G+ P+ DHY C+++LLGR+  + +A  L+  L HK    
Sbjct: 509 CSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLL--LRHKDFEA 566

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           + + W   LS C M GD++  + AA+ + ELEP N    ++LSN+YAA GR  DVA IR+
Sbjct: 567 DVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRN 626

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            MKS  VKKFA  SWIEI+N+VH+F+  D +HP    IY EL +L ++++EAG+ P+TK+
Sbjct: 627 EMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKM 686

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VL D  EE+K + + YHSE+LA+A  +I  P G T +R++KN+RVC DCH   KF S I+
Sbjct: 687 VLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTT-LRVVKNLRVCSDCHAATKFISQIV 745

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR II+RD++RFHHF  G CSC D W
Sbjct: 746 GRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 150/306 (49%), Gaps = 44/306 (14%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A+  L+   +R  D++  +RL S M+       TT +   L++ Y K G++  AR + D 
Sbjct: 296 AWNALLEGYSRTGDLDEVRRLFSAME--HRTVATTVVAGTLVNLYGKCGRVDDARRVLDA 353

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP+R  +SW A+++A+A++G+                                 EA+ +F
Sbjct: 354 MPVRTSVSWTAMIAAYAQNGNAA-------------------------------EAINLF 382

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL-GGNVFVRNALTDMYAK 203
             M  +  EP+D T +S +++CA L  L  GK+IH +I    L   ++ + NA+  MY K
Sbjct: 383 QCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGK 442

Query: 204 GGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTV 260
            G ++ AR +F+   +  R++V+W  MI  Y +NG  ++ I+LFQEM +  G  P+ VT 
Sbjct: 443 CGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTF 502

Query: 261 SNILGACFQTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
            ++L AC   G+++ A       G  F V    D+ C    ++G      E + L+L ++
Sbjct: 503 LSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHK 562

Query: 314 MLSEDV 319
               DV
Sbjct: 563 DFEADV 568



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 162/367 (44%), Gaps = 29/367 (7%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           + ACA    L   K +H +I     G N  + N L D++ K G+ D AR +F+R+   N 
Sbjct: 14  IRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNE 73

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH- 281
            SW+ +I  Y+ + +      LF  M       D  T + ++ A  +  R+DDA  LFH 
Sbjct: 74  YSWSCIIQAYVSSSRIHDARALFDSMPGF----DAFTWNIMIAAYARINRLDDARELFHG 129

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP--DKFSISSVVSSCAKLASL 339
           +I  +D V W  ++ GY ++ + E+A  LF  M      P  D  + +SV+   A    L
Sbjct: 130 MISGRDVVSWAILVAGYARHDRLEEASALFRRM------PLWDTVTCTSVLQGYAHNGHL 183

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
              Q +  +    G D D    +A+I  Y K    D A  +F  +  RN  SW+ ++  Y
Sbjct: 184 AEAQELFDRIGGAG-DRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTY 242

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           AQNG    A   +D++ Q     DS  F ++ +           +     +SAV  I   
Sbjct: 243 AQNGHLDLAKKSFDRMPQR----DSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIA-- 296

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARH 517
              +  ++    R+ D+D+   L  ++ H+    +++  TL+++    G +      AR 
Sbjct: 297 ---WNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDD----ARR 349

Query: 518 LFELEPI 524
           + +  P+
Sbjct: 350 VLDAMPV 356



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 54/281 (19%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G   ++     +V  C  +  + L KR+ + +  +     +  L N ++  Y K G L  
Sbjct: 389 GAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLEL 448

Query: 78  ARDLFDKMPL--RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           AR++F+ +PL  R +++W A++ A+A++G  ++   LF +M I                 
Sbjct: 449 AREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGT------------- 495

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
                            EP   T +S L+AC+ L  L +  + H      ++G +  V  
Sbjct: 496 -----------------EPNRVTFLSVLSACSHLGQLEQAWE-H----FCSMGPDFGVPP 533

Query: 196 A------LTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQE 247
           A      L D+  + G + +A  L  R  +   ++V W   +S    NG  ++     + 
Sbjct: 534 AGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKR 593

Query: 248 MQLLGLNPDEVT----VSNILGACFQTGRIDDAGRLFHVIK 284
           +    L P+ V     +SN+  A    GR  D  R+ + +K
Sbjct: 594 VS--ELEPENVAGRVLLSNVYAA---KGRRADVARIRNEMK 629


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 357/638 (55%), Gaps = 39/638 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A +  G +   R +FD +P      +N  I G++     ++AL ++S MQ  R  P 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T    L AC+ L  L+ G+ +H ++       +VFV+N L  +YAK   +  AR +F+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE 178

Query: 216 --RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--CFQ-- 269
              +  R +VSW  ++S Y +NG+P + +++F +M+ + + PD V + ++L A  C Q  
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 270 -------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G++  A  LF  +K  + + W  MI GY
Sbjct: 239 KQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGY 298

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            +NG   +A+ +F+EM+++DVRPD  SI+S +S+CA++ SL   + ++         DD+
Sbjct: 299 AKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDV 358

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +SSALIDM+ KCG  + A  VF+    R+VV W++MI GY  +G+  EA++LY  + + 
Sbjct: 359 FISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERG 418

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  TF+ +L AC H+ +   G   F+ + A H I P   HYAC+I+LLGR+  +D+
Sbjct: 419 GVHPNDVTFLGLLMACNHSGMVREGWWFFNRM-ADHKINPQQQHYACVIDLLGRAGHLDQ 477

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A ++IK +P +P   +W  LLS C     ++ GE AA+ LF ++P N G Y+ LSN+YAA
Sbjct: 478 AYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAA 537

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              W+ VA +R  MK K + K    SW+E+  ++  F   D++HP  E I  ++  +  +
Sbjct: 538 ARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESR 597

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+E GF  N    LHD  +EE  +++C HSE++A+AY LI  P G TP+RI KN+R C +
Sbjct: 598 LKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQG-TPLRITKNLRACVN 656

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K  S ++ R I++RD+NRFHHF  G CSC D W
Sbjct: 657 CHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 161/314 (51%), Gaps = 41/314 (13%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQIH +++V  L  + F+   L    +  G+I  AR +FD +    +  WN +I GY +N
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTG-------- 271
              +  + ++  MQL  ++PD  T  ++L AC                F+ G        
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 272 -----------RIDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                      R+  A  +F    + E+  V WT ++  Y QNG+  +AL +F++M   D
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDDLLVSSALIDMYCKCGVTDD 376
           V+PD  ++ SV+++   L  L  G+ +H   V +G  ++ DLL+S  L  MY KCG    
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQVAT 275

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ M + N++ WN+MI+GYA+NG   EA+ ++ +++ ++++PD+ +  S +SAC  
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 437 ADLFERGQNHFDSI 450
               E+ ++ ++ +
Sbjct: 336 VGSLEQARSMYEYV 349



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 10/262 (3%)

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           +LGL      ++ ++ A    G I  A ++F  +       W  +I GY++N   +DAL+
Sbjct: 46  VLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALL 105

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           +++ M    V PD F+   ++ +C+ L+ L  G+ VH +   LG D D+ V + LI +Y 
Sbjct: 106 MYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA 165

Query: 370 KCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           KC     A TVF    +P R +VSW ++++ YAQNG+ +EAL ++ ++ + ++KPD    
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVAL 225

Query: 428 VSVLSA--CLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIK 484
           VSVL+A  CL  DL +    H   +     I P  L     M    G+ +      D +K
Sbjct: 226 VSVLNAFTCLQ-DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 485 SLPHKPNSLIWSTLLSVCAMKG 506
           S    PN ++W+ ++S  A  G
Sbjct: 285 S----PNLILWNAMISGYAKNG 302



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 114/192 (59%), Gaps = 3/192 (1%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +IS N +   +A+ G V   + LFDKM   + + +N  I+G+A  G++REA+ +F  M  
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
               P   +  SA++ACAQ+  L + + ++  +   +   +VF+ +AL DM+AK G ++ 
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEG 376

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           AR +FDR  +R++V W+ MI GY  +G+ ++ I L++ M+  G++P++VT   +L AC  
Sbjct: 377 ARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNH 436

Query: 270 TGRIDDAGRLFH 281
           +G + +    F+
Sbjct: 437 SGMVREGWWFFN 448



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 46/278 (16%)

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  D F  +S++ S    A L   + +H + +VLG+     + + LI      G    A 
Sbjct: 18  IHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFAR 73

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---- 434
            VF+ +P   +  WN++I GY++N    +AL +Y  +    + PDSFTF  +L AC    
Sbjct: 74  QVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLS 133

Query: 435 -------LHADLFERG-------QN----------HFDSISAVHGITP----SLDHYACM 466
                  +HA +F  G       QN             S   V    P    ++  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 467 INLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE----MAARHLF 519
           ++   ++ +  +A+++   ++ +  KP+ +   ++L+      D+K G        +   
Sbjct: 194 VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E+EP      I L+ MYA CG+      +   MKS N+
Sbjct: 254 EIEP---DLLISLNTMYAKCGQVATAKILFDKMKSPNL 288



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 11/206 (5%)

Query: 70  AKSGKLFYARDLFDKMPLRD----IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           A+ G L  AR +++ +   D    +   +AL+   A+ GSV+  R +FD+   RD V ++
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I G+   G +REA+ ++  M++    P D T +  L AC     +R G     ++   
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADH 453

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDL 244
            +         + D+  + G +D+A  +   M  +  V+ W  ++S   K+   +  +  
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE--LGE 511

Query: 245 FQEMQLLGLNPDE----VTVSNILGA 266
           +   QL  ++P      V +SN+  A
Sbjct: 512 YAAQQLFSIDPSNTGHYVQLSNLYAA 537


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/691 (36%), Positives = 378/691 (54%), Gaps = 89/691 (12%)

Query: 94  NALLSAHARSGSVQDLRALFDKM---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           N++++ + R G++ D   +FD++    I D VS+N+ +A +   G SR AL++  RM   
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNH 225

Query: 151 ---RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
              +  P   T V+ L ACA +  L+ GKQ+HG  V   L  +VFV NAL  MYAK  ++
Sbjct: 226 YSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKM 285

Query: 208 DKARWLFDRMNNRNLVSWNLM-----------------------------------ISGY 232
           ++A  +F+ +  +++VSWN M                                   I+GY
Sbjct: 286 NEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGY 345

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI------------------- 273
            + G   + +D+F++MQL GL P+ VT++++L  C   G +                   
Sbjct: 346 AQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNW 405

Query: 274 ----DD-------------------AGRLFHVIKEKDN--VCWTTMIVGYTQNGKEEDAL 308
               DD                   A  +F  I+ KD   V WT MI GY Q+G+  DAL
Sbjct: 406 NDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDAL 465

Query: 309 ILFNEMLSE--DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALI 365
            LF ++  +   ++P+ F++S  + +CA+L  L  G+ +H  A+    + ++L V + LI
Sbjct: 466 KLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLI 525

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY K G  D A  VF+ M  RNVVSW S++ GY  +G+  EAL L+D++ +     D  
Sbjct: 526 DMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGI 585

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+ VL AC H+ + ++G  +F  +    GITP  +HYACM++LLGR+  +++A++LIK+
Sbjct: 586 TFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKN 645

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +  +P +++W  LLS   +  +I+ GE AA  L EL   N G Y +LSN+YA   RW+DV
Sbjct: 646 MSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDV 705

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A IRS MK   ++K    SWI+       F   DR+HPE+E IY  L  LIK++++ G+ 
Sbjct: 706 ARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYV 765

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P T   LHD  +EEK   +  HSEKLA+AY ++    G  PIRI KN+R+CGDCH  + +
Sbjct: 766 PQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPG-QPIRIHKNLRICGDCHSALTY 824

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S II   I+LRDS+RFHHF  G+CSC+  W
Sbjct: 825 ISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 140/513 (27%), Positives = 236/513 (46%), Gaps = 94/513 (18%)

Query: 97  LSAHARSGSVQDLRALFDKM-PIRDSVSY-NTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           + A+   G+  +  +L  ++ P   +V + N  I      G   + L  + +MQ+  + P
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT    L AC ++  LR G  +H  +    LG NVF+ N++  MY + G +D A  +F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 215 DRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEM---QLLGLNPDEVTVSNILGAC- 267
           D +  R   ++VSWN +++ Y++ GQ +  + +   M     L L PD +T+ NIL AC 
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 268 ---------------FQTGRIDD-------------------AGRLFHVIKEKDNVCWTT 293
                           + G +DD                   A ++F  IK+KD V W  
Sbjct: 246 SVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNA 305

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVR--------------------------------- 320
           M+ GY+Q G  + AL LF  M  ED++                                 
Sbjct: 306 MVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYG 365

Query: 321 --PDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGV-----DDDLLVSSALIDMYCKC 371
             P+  +++S++S CA + +L +G+  H   +  +L +     +DDLLV + LIDMY KC
Sbjct: 366 LEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKC 425

Query: 372 GVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTF 427
                A ++F+ +    +NVV+W  MI GYAQ+G+  +AL L+ ++ ++  +LKP++FT 
Sbjct: 426 KSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTL 485

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
              L AC        G+            +  L    C+I++  +S D+D A  +  ++ 
Sbjct: 486 SCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMK 545

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
            + N + W++L++   M G    GE  A HLF+
Sbjct: 546 LR-NVVSWTSLMTGYGMHG---RGE-EALHLFD 573



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 185/393 (47%), Gaps = 53/393 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N L+  YAK  K+  A  +F+ +  +D++SWNA+++ +++ GS     +LF  M  
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 119 R----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                D ++++  IAG+A KG   EAL VF +MQ    EP   T  S L+ CA +  L  
Sbjct: 329 EDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLY 388

Query: 175 GKQIHGKIV--VGNLGGN-----VFVRNALTDMYAKGGEIDKARWLFDRMN--NRNLVSW 225
           GKQ H  ++  + NL  N     + V N L DMYAK      AR +FD +   ++N+V+W
Sbjct: 389 GKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTW 448

Query: 226 NLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACF--------------- 268
            +MI GY ++G+    + LF ++  Q   L P+  T+S  L AC                
Sbjct: 449 TVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYA 508

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                ++G ID A  +F  +K ++ V WT+++ GY  +G+ E+A
Sbjct: 509 LRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEA 568

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV-VHGKAVVLGVDDDLLVSSALID 366
           L LF++M       D  +   V+ +C+    +  G +  H      G+       + ++D
Sbjct: 569 LHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVD 628

Query: 367 MYCKCGVTDDAWTVF-NMMPTRNVVSWNSMING 398
           +  + G  ++A  +  NM      V W ++++ 
Sbjct: 629 LLGRAGRLNEAMELIKNMSMEPTAVVWVALLSA 661



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 167/331 (50%), Gaps = 25/331 (7%)

Query: 48  HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD-----LFDKMPLR------DIISWNAL 96
            M L   EPN   L + LL   A  G L Y +      + + + L       D++  N L
Sbjct: 360 QMQLYGLEPNVVTLAS-LLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGL 418

Query: 97  LSAHARSGSVQDLRALFDKMPIRDS--VSYNTAIAGFANKGFSREALQVFSRM--QKDRF 152
           +  +A+  S +  R++FD +  +D   V++   I G+A  G + +AL++F+++  QK   
Sbjct: 419 IDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSL 478

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKAR 211
           +P  +T   AL ACA+L +LR G+Q+H   +   N    ++V N L DMY+K G+ID AR
Sbjct: 479 KPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAAR 538

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD M  RN+VSW  +++GY  +G+ ++ + LF +MQ LG   D +T   +L AC  +G
Sbjct: 539 AVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSG 598

Query: 272 RIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +D     FH + +   +      +  M+    + G+  +A+ L   M  E   P     
Sbjct: 599 MVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSME---PTAVVW 655

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            +++S+    A++  G+    K   LG ++D
Sbjct: 656 VALLSASRIHANIELGEYAASKLTELGAEND 686



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C R+ ++ L ++L ++   N  E    ++ N L+  Y+KSG +  AR +FD M LR+
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
           ++SW +L++ +   G  ++   LFD+M       D +++   +   ++ G   + +  F 
Sbjct: 549 VVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFH 608

Query: 146 RMQK 149
            M K
Sbjct: 609 DMVK 612



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 73/361 (20%), Positives = 145/361 (40%), Gaps = 47/361 (13%)

Query: 321 PDKFSISSVVSSCAKL--ASLYHGQV-VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           P    + S++  C  L  A L H Q+ VHG   +          S  +  Y +CG + +A
Sbjct: 28  PPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMF---------SYAVGAYIECGASAEA 78

Query: 378 WTVFN-MMPTRNVVSW-NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            ++   ++P+ + V W N++I    + G   + L  Y ++ +    PD +TF  VL AC 
Sbjct: 79  VSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACG 138

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLI 494
                  G +   +I   +G+  ++     ++ + GR   +D A  +  + L  K   ++
Sbjct: 139 EIPSLRHGAS-VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIV 197

Query: 495 -WSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
            W+++L+     G  +        M   +  +L P      I L N+  AC      AS+
Sbjct: 198 SWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRP----DAITLVNILPAC------ASV 247

Query: 549 RSSMKSKNVKKFAAYSW----IEIDNKVHKFVSEDRTHPETEIIYEELSK--------LI 596
            +    K V  F+  +     + + N +    ++     E   ++E + K        ++
Sbjct: 248 FALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMV 307

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
               + G S ++ L L    +EE +K        +   Y   +K HG   + + + +++ 
Sbjct: 308 TGYSQIG-SFDSALSLFKMMQEEDIKLDVITWSAVIAGYA--QKGHGFEALDVFRQMQLY 364

Query: 657 G 657
           G
Sbjct: 365 G 365


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/638 (35%), Positives = 358/638 (56%), Gaps = 39/638 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A +  G +   R +FD +P      +N  I G++     ++AL ++S+MQ  R  P 
Sbjct: 59  LIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPD 118

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T    L AC  L  L+ G+ +H ++       +VFV+N L  +YAK   +  AR +F+
Sbjct: 119 SFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFE 178

Query: 216 --RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--CFQ-- 269
              +  R +VSW  ++S Y +NG+P + +++F +M+ + + PD V + ++L A  C Q  
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDL 238

Query: 270 -------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G++  A  LF  +K  + + W  MI GY
Sbjct: 239 EQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGY 298

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            +NG  +DA+ LF+EM+++DVRPD  SI+S +S+CA++ SL   + +          DD+
Sbjct: 299 AKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDV 358

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +SSALIDM+ KCG  + A +VF+    R+VV W++MI GY  +GQ  EA++LY  + ++
Sbjct: 359 FISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERD 418

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  TF+ +L AC H+ +   G   F+ + A H I P   HYAC+I+LLGR+  +D+
Sbjct: 419 GVHPNDVTFLGLLIACNHSGMVREGWWFFNRM-ADHKINPQQQHYACIIDLLGRAGHLDQ 477

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A ++IK +P +P   +W  LLS C     ++ G+ AA+ LF ++P N G Y+ LSN+YAA
Sbjct: 478 AYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAA 537

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              W+ VA +R  MK K + K    SW+E+  ++  F   D++HP  E I  ++  +  +
Sbjct: 538 ARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESR 597

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+E GF  N    LHD  +EE  +++C HSE++ +AY LI  P G T +RI KN+R C +
Sbjct: 598 LKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTT-LRITKNLRACVN 656

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K  S ++GR I++RD+NRFHHF  G CSC D W
Sbjct: 657 CHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 193/425 (45%), Gaps = 70/425 (16%)

Query: 14  LYSRGQAA--TEEAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           +YS+ Q A  + +++T   L+  C  ++ +++ + + + +    +E +  F+ N L+  Y
Sbjct: 106 MYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADV-FVQNGLIALY 164

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           AK  +L  AR +F+ +PL                             P R  VS+   ++
Sbjct: 165 AKCRRLGCARTVFEGLPL-----------------------------PERTIVSWTAIVS 195

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
            +A  G   EAL++FS+M+K   +P     VS LNA   L DL +G+ IH  ++   L  
Sbjct: 196 AYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLET 255

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
              +  +L  MYAK G++  A+ LFD+M + NL+ WN MISGY KNG  K  IDLF EM 
Sbjct: 256 EPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMI 315

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDD---------------------------------- 275
              + PD +++++ + AC Q G ++                                   
Sbjct: 316 NKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVE 375

Query: 276 -AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A  +F    ++D V W+ MIVGY  +G+  +A+ L+  M  + V P+  +   ++ +C 
Sbjct: 376 CARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACN 435

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
               +  G     +     ++      + +ID+  + G  D A+ V   MP +  V  W 
Sbjct: 436 HSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWG 495

Query: 394 SMING 398
           ++++ 
Sbjct: 496 ALLSA 500



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 158/309 (51%), Gaps = 43/309 (13%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +QIH +++V  L  + F+   L    +  G+I  AR +FD +    +  WN +I GY +N
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRIDDAGRLFHV-------- 282
              +  + ++ +MQL  ++PD  T  ++L AC      Q GR   A ++F +        
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHA-QVFRLGFEADVFV 156

Query: 283 -------------------------IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                                    + E+  V WT ++  Y QNG+  +AL +F++M   
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM 216

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTD 375
           DV+PD  ++ SV+++   L  L  G+ +H   + +G++   DLL+S  L  MY KCG   
Sbjct: 217 DVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLIS--LNTMYAKCGQVA 274

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+ M + N++ WN+MI+GYA+NG   +A+ L+ +++ ++++PD+ +  S +SAC 
Sbjct: 275 TAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACA 334

Query: 436 HADLFERGQ 444
                E+ +
Sbjct: 335 QVGSLEQAR 343



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 135/262 (51%), Gaps = 4/262 (1%)

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           +LGL      ++ ++ A    G I  A ++F  +       W  +I GY++N   +DAL+
Sbjct: 46  VLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALL 105

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           ++++M    V PD F+   ++ +C  L+ L  G+ VH +   LG + D+ V + LI +Y 
Sbjct: 106 MYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYA 165

Query: 370 KCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           KC     A TVF    +P R +VSW ++++ YAQNG+ +EAL ++ ++ + ++KPD    
Sbjct: 166 KCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVAL 225

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           VSVL+A       E+G++   S+  + G+    D    +  +  +   V  A  L   + 
Sbjct: 226 VSVLNAFTCLQDLEQGRSIHASVMKM-GLETEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 488 HKPNSLIWSTLLSVCAMKGDIK 509
             PN ++W+ ++S  A  G  K
Sbjct: 285 -SPNLILWNAMISGYAKNGFAK 305



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 120/278 (43%), Gaps = 46/278 (16%)

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  D F  S + SS  K A L   + +H + +VLG+     + + LI      G    A 
Sbjct: 18  IHSDSFYASLIDSSTHK-AQL---RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFAR 73

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---- 434
            VF+ +P   V  WN++I GY++N    +AL +Y K+    + PDSFTF  +L AC    
Sbjct: 74  QVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLS 133

Query: 435 -------LHADLFERG-------QNHFDSISA----------VHGITP----SLDHYACM 466
                  +HA +F  G       QN   ++ A          V    P    ++  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAI 193

Query: 467 INLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE----MAARHLF 519
           ++   ++ +  +A+++   ++ +  KP+ +   ++L+      D++ G        +   
Sbjct: 194 VSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGL 253

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E EP      I L+ MYA CG+      +   MKS N+
Sbjct: 254 ETEP---DLLISLNTMYAKCGQVATAKILFDKMKSPNL 288


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 256/726 (35%), Positives = 381/726 (52%), Gaps = 72/726 (9%)

Query: 10  AIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           AID  +S    G    +  Y  ++  C+ +  +E    + SH  + F   +  F+   L+
Sbjct: 93  AIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM-FGLESDVFVCTALV 151

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
            FYAK G L  A+ LF  M  RD+++WNA+                              
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAM------------------------------ 181

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            IAG +  G   +A+Q+  +MQ++   P   T V  L    +   L  GK +HG  V  +
Sbjct: 182 -IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRS 240

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
               V V   L DMYAK   +  AR +FD M  RN VSW+ MI GY+ +   K+ ++LF 
Sbjct: 241 FDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 247 EMQLL-GLNPDEVTVSNILGAC-----------------------------------FQT 270
           +M L   ++P  VT+ ++L AC                                    + 
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKC 360

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G IDDA R F  +  KD+V ++ ++ G  QNG    AL +F  M    + PD  ++  V+
Sbjct: 361 GVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVL 420

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +C+ LA+L HG   HG  +V G   D L+ +ALIDMY KCG    A  VFN M   ++V
Sbjct: 421 PACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIV 480

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+MI GY  +G  +EAL L+  LL   LKPD  TF+ +LS+C H+ L   G+  FD++
Sbjct: 481 SWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAM 540

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S    I P ++H  CM+++LGR+  +D+A   I+++P +P+  IWS LLS C +  +I+ 
Sbjct: 541 SRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIEL 600

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE  ++ +  L P + G +++LSN+Y+A GRW+D A IR + K   +KK    SWIEI+ 
Sbjct: 601 GEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEING 660

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH FV  D++H +   I  +L +L+ +++  G+      V  D +EEEK + + YHSEK
Sbjct: 661 IVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEK 720

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ ++    G  PI + KN+RVCGDCH  +KF + I  R I +RD+NRFHHF  G C
Sbjct: 721 LAIAFGILNLKAG-RPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTC 779

Query: 691 SCKDNW 696
           +C D W
Sbjct: 780 NCGDFW 785



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 130/454 (28%), Positives = 214/454 (47%), Gaps = 68/454 (14%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C +   +  AK++  H   N    +++ LH +L   Y    ++  AR LFD++
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLH-KLTRLYLSCNQVVLARRLFDEI 69

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P   +I WN ++ A+A +G        FD                         A+ ++ 
Sbjct: 70  PNPSVILWNQIIRAYAWNGP-------FDG------------------------AIDLYH 98

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M      P  YT+   L AC+ LL +  G +IH    +  L  +VFV  AL D YAK G
Sbjct: 99  SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL- 264
            + +A+ LF  M++R++V+WN MI+G    G     + L  +MQ  G+ P+  T+  +L 
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 265 -------------------------GACFQTGRID---------DAGRLFHVIKEKDNVC 290
                                    G    TG +D          A ++F V+  ++ V 
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVS 278

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           W+ MI GY  +   ++AL LF++M+ +D + P   ++ SV+ +CAKL  L  G+ +H   
Sbjct: 279 WSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYI 338

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           + LG   D+L+ + L+ MY KCGV DDA   F+ M  ++ VS++++++G  QNG    AL
Sbjct: 339 IKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +++  +    + PD  T + VL AC H    + G
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHG 432



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 182/394 (46%), Gaps = 41/394 (10%)

Query: 151 RFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           RFE   +Y H+  L AC Q   L   K+IH   +      +  V + LT +Y    ++  
Sbjct: 4   RFEVKNNYLHL--LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           AR LFD + N +++ WN +I  Y  NG     IDL+  M  LG+ P++ T   +L AC  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G + +A RLF  +  +D V W  M
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G +  G  +DA+ L  +M  E + P+  +I  V+ +  +  +L HG+ +HG  V    
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D+ ++V + L+DMY KC     A  +F++M  RN VSW++MI GY  +    EAL L+D+
Sbjct: 242 DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQ 301

Query: 415 L-LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           + L++ + P   T  SVL AC       RG+     I  +  +   L     ++++  + 
Sbjct: 302 MILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT-LLSMYAKC 360

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +D A+     +  K +S+ +S ++S C   G+
Sbjct: 361 GVIDDAIRFFDEMNPK-DSVSFSAIVSGCVQNGN 393


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/669 (35%), Positives = 378/669 (56%), Gaps = 38/669 (5%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD--------------- 108
           +L+ FYA  G L   R +FD M  +++  WN ++S +A+ G  ++               
Sbjct: 139 KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 198

Query: 109 -----LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                   LFDK+  RD +S+N+ I+G+ + G +   L ++ +M     +    T +S L
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
             CA    L  GK +H   +  +    +   N L DMY+K G++D A  +F++M  RN+V
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 318

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  MI+GY ++G     I L Q+M+  G+  D V +++IL AC ++G +D+   +   I
Sbjct: 319 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 378

Query: 284 KEKDN-----VCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------RPDKFSISS 328
           K  +      VC   M + Y + G  E A  +F+ M+ +D+          +PD  +++ 
Sbjct: 379 KANNMASNLFVCNALMDM-YAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMAC 437

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++ +CA L++L  G+ +HG  +  G   D  V++AL+D+Y KCGV   A  +F+M+P+++
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +VSW  MI GY  +G   EA+A ++++    ++PD  +F+S+L AC H+ L E+G   F 
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +     I P L+HYACM++LL R+ ++ KA   I++LP  P++ IW  LL  C +  DI
Sbjct: 558 IMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDI 617

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           +  E  A  +FELEP N G Y++L+N+YA   + E+V  +R  +  K ++K    SWIEI
Sbjct: 618 ELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEI 677

Query: 569 DNKVHKFVS-EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
             +V+ FVS  + +HP ++ I   L K+ +K++E G+ P TK  L +  E +K  ++C H
Sbjct: 678 KGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGH 737

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+A+ L+  P   T IR+ KN+RVCGDCH   KF S    R I+LRDSNRFHHF  
Sbjct: 738 SEKLAMAFGLLTLPPRKT-IRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 796

Query: 688 GNCSCKDNW 696
           G CSC+  W
Sbjct: 797 GYCSCRGFW 805



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/403 (30%), Positives = 187/403 (46%), Gaps = 33/403 (8%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN  I  F   G    A+++    QK   E   Y   S L  CA L  L  GK++H  I 
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSELETKTYG--SVLQLCAGLKSLTDGKKVHSIIK 126

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
             ++G +  +   L   YA  G++ + R +FD M  +N+  WN M+S Y K G  K+ I 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           LF+ M   G+               +  R + A  LF  + ++D + W +MI GY  NG 
Sbjct: 187 LFKIMVEKGI---------------EGKRPESASELFDKLCDRDVISWNSMISGYVSNGL 231

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E  L ++ +M+   +  D  +I SV+  CA   +L  G+ VH  A+    +  +  S+ 
Sbjct: 232 TERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNT 291

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KCG  D A  VF  M  RNVVSW SMI GY ++G    A+ L  ++ +E +K D
Sbjct: 292 LLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLD 351

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISA------VHGITPSLDHYACMINLLGRSS--- 474
                S+L AC  +   + G++  D I A      +      +D YA   ++ G +S   
Sbjct: 352 VVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFS 411

Query: 475 -----DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
                D+     ++  L  KP+S   + +L  CA    ++ G+
Sbjct: 412 TMVVKDIISWNTMVGEL--KPDSRTMACILPACASLSALERGK 452



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 50/311 (16%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
            +++ C     + L K + S    + +E    F  N LL  Y+K G L  A  +F+KM  
Sbjct: 256 SVLVGCANSGTLSLGKAVHSLAIKSSFERRINF-SNTLLDMYSKCGDLDGALRVFEKMGE 314

Query: 88  RDIISWNALLSAH-----------------------------------ARSGSVQDLRAL 112
           R+++SW ++++ +                                   ARSGS+ + + +
Sbjct: 315 RNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 113 FDKMPIRDSVS----YNTAIAGFANKGFSREALQVFSRM-QKD---------RFEPTDYT 158
            D +   +  S     N  +  +A  G    A  VFS M  KD           +P   T
Sbjct: 375 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRT 434

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L ACA L  L RGK+IHG I+      +  V NAL D+Y K G +  AR LFD + 
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           +++LVSW +MI+GY  +G   + I  F EM+  G+ PDEV+  +IL AC  +G ++   R
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 279 LFHVIKEKDNV 289
            F+++K   N+
Sbjct: 555 FFYIMKNDFNI 565



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 80/200 (40%), Gaps = 50/200 (25%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A T ++  C R   ++  K +  ++  N    N  F+ N L+  YAK G +  A  +F  
Sbjct: 354 AITSILHACARSGSLDNGKDVHDYIKANNMASNL-FVCNALMDMYAKCGSMEGANSVFST 412

Query: 85  MPLRDIISW-------------------------------------------------NA 95
           M ++DIISW                                                 NA
Sbjct: 413 MVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANA 472

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +   R LFD +P +D VS+   IAG+   G+  EA+  F+ M+    EP 
Sbjct: 473 LVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPD 532

Query: 156 DYTHVSALNACAQLLDLRRG 175
           + + +S L AC+    L +G
Sbjct: 533 EVSFISILYACSHSGLLEQG 552


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/646 (36%), Positives = 361/646 (55%), Gaps = 49/646 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL SA+AR G +   + +FD+   RD VS+N  +  +A  G   EA  +F+RM  +   
Sbjct: 264 TALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIP 323

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+  T V+A   C+    LR G+ IH   +   L  ++ + NAL DMY + G  ++AR L
Sbjct: 324 PSKVTLVNASTGCS---SLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHL 380

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           F+ +   N VSWN MI+G  + GQ K+ ++LFQ MQL G+ P   T  N+L A       
Sbjct: 381 FEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEE 439

Query: 271 ------------------------------------GRIDDAGRLFH---VIKEKDNVCW 291
                                               G ID+A   F    +    D V W
Sbjct: 440 ARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I   +Q+G  + AL  F  M    V P++ +  +V+ +CA  A+L  G +VH     
Sbjct: 500 NAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRH 559

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALA 410
            G++ ++ V++AL  MY +CG  + A  +F  +   R+VV +N+MI  Y+QNG   EAL 
Sbjct: 560 SGMESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALK 619

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++ QE  +PD  +FVSVLSAC H  L + G   F S+   +GI PS DHYAC +++L
Sbjct: 620 LFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVL 679

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +  A +LI+ +  KP  L+W TLL  C    D+  G +A   + EL+P +   Y+
Sbjct: 680 GRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYV 739

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+ A  G+W++ A +R+ M+S+ ++K A  SWIEI ++VH+FV+ DR+HP +E IY 
Sbjct: 740 VLSNILAGAGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYR 799

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL +L  +++E G+ P+T+LVL    E EK + +C HSE+LA+A  ++        +R+M
Sbjct: 800 ELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSS--TDTVRVM 857

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   KF S I+ + I++RD++RFHHFV G+CSC D W
Sbjct: 858 KNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/372 (31%), Positives = 191/372 (51%), Gaps = 37/372 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  + +  S+ D+  +F ++ +RD  S+ T I  +   G ++ A+ +F RMQ++   
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T ++ L ACA+L DL +G+ IH  IV   L G   + N L  +Y   G +  A  L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           F+RM  R+LVSWN  I+   ++G     ++LFQ MQL G+ P  +T+   L  C +    
Sbjct: 186 FERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQA 244

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +D A  +F    E+D V W  M+  Y Q+
Sbjct: 245 RAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQH 304

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   +A +LF  ML E + P K ++ +  + C   +SL  G+++H  A+  G+D D+++ 
Sbjct: 305 GHMSEAALLFARMLHEGIPPSKVTLVNASTGC---SSLRFGRMIHACALEKGLDRDIVLG 361

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY +CG  ++A  +F  +P  N VSWN+MI G +Q GQ   AL L+ ++  E + 
Sbjct: 362 NALLDMYTRCGSPEEARHLFEGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMA 420

Query: 422 PDSFTFVSVLSA 433
           P   T++++L A
Sbjct: 421 PVRATYLNLLEA 432



 Score =  149 bits (376), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 180/399 (45%), Gaps = 63/399 (15%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L +G++IH +IV  +LG    + N L  +Y K   +     +F R+  R+  SW  +I+ 
Sbjct: 45  LSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITA 102

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---------------- 275
           Y ++GQ K+ I +F  MQ  G+  D VT   +L AC + G +                  
Sbjct: 103 YTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGK 162

Query: 276 ---AGRLFHVIK---------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
              A  L H+                 E+D V W   I    Q+G  + AL LF  M  E
Sbjct: 163 SVLANLLLHIYGSCGCVASAMLLFERMERDLVSWNAAIAANAQSGDLDMALELFQRMQLE 222

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            VRP + ++   +S CAK+      + +H      G++  L+VS+AL   Y + G  D A
Sbjct: 223 GVRPARITLVITLSVCAKI---RQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQA 279

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC--- 434
             VF+    R+VVSWN+M+  YAQ+G   EA  L+ ++L E + P   T V+  + C   
Sbjct: 280 KEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSL 339

Query: 435 -----LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
                +HA   E+G +    +               ++++  R    ++A  L + +P  
Sbjct: 340 RFGRMIHACALEKGLDRDIVLGNA------------LLDMYTRCGSPEEARHLFEGIP-- 385

Query: 490 PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE-LEPINA 526
            N++ W+T+++  + KG +K   E+  R   E + P+ A
Sbjct: 386 GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRA 424



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 33/125 (26%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL-RDIISWNALLSAHARS 103
           +  H+  +  E N  F+   L   Y + G L  AR++F+K+ + RD++ +NA+       
Sbjct: 553 VHDHLRHSGMESNV-FVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAM------- 604

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                                   IA ++  G + EAL++F RMQ++   P + + VS L
Sbjct: 605 ------------------------IAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVL 640

Query: 164 NACAQ 168
           +AC+ 
Sbjct: 641 SACSH 645


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 257/743 (34%), Positives = 397/743 (53%), Gaps = 89/743 (11%)

Query: 3   AKHKLRQAIDTLYSRGQAA----TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT 58
           ++  L++A+   YS         +   Y  L   C R + +   + L  HM L  + PN+
Sbjct: 39  SRGHLQEALKLFYSITPPPPLVHSHHTYAALFQACARRSSLPEGQALHRHMFL--HNPNS 96

Query: 59  ---TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
               FL N +++ YAK G L YA  +                               FD+
Sbjct: 97  DFNLFLTNHVVNMYAKCGSLDYAHQM-------------------------------FDE 125

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP ++ VS+   ++G+A  G S E  +VF  M     +PT++   S ++AC    D   G
Sbjct: 126 MPEKNIVSWTALVSGYAQHGRSNECFRVFRGMLI-WHQPTEFAFASVISACGG--DDNCG 182

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           +Q+H   +  +    V+V NAL  MY K  G  D+A  +++ M  RNLVSWN MI+G+  
Sbjct: 183 RQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAWNVYEAMGFRNLVSWNSMIAGFQV 242

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNI----------LGACFQ--------------- 269
            G   + ++LF +M + G+  D  T+ +I          L  CFQ               
Sbjct: 243 CGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMGDGLECCFQLQCLTIKTGFILKIE 302

Query: 270 ------------TGRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                        G + D  R+F  +   +D V WT +I  + +   ++ AL++F + L 
Sbjct: 303 VATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTGIIAAFAERDPKK-ALVIFRQFLR 361

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           E + PD+   S V+ +CA LA+  H   V    + +G +DD+++++ALI    +CG    
Sbjct: 362 ECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVGFEDDIVLANALIHACARCGSVAL 421

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           +  VF+ M +R+ VSWNSM+  YA +GQ  EAL L+ ++   + +PD  TFV++LSAC H
Sbjct: 422 SKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFSQM---DAQPDGATFVALLSACSH 478

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           A + E G   F+++S  HGI P LDHYACM+++LGR+  + +A +LI  +P +P+S++WS
Sbjct: 479 AGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAGQISEAKELIDKMPMEPDSVVWS 538

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            LL  C   G+ K  ++AA  L EL+P N+  Y+++SN++   GR+ +   IR  M+ K 
Sbjct: 539 ALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSNIFCTDGRFNEARLIRREMEGKI 598

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V+K    SWIE+ N+VH+F S  + HPE E I   L +L+++L++ G+ P   L LHD +
Sbjct: 599 VRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARLEELVRRLKDLGYVPQISLALHDIE 658

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPH---GVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           +E K + + YHSEKLALA+ L+           I+IMKNIR+C DCH FMK AS+++   
Sbjct: 659 DEHKEEQLYYHSEKLALAFALMNVGSICCSGNTIKIMKNIRICVDCHNFMKLASELVDME 718

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I++RDSNRFHHF    CSC D W
Sbjct: 719 IVVRDSNRFHHFKAKVCSCNDYW 741


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/708 (33%), Positives = 390/708 (55%), Gaps = 69/708 (9%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A   ++    +   +   K+L + +    Y P  TFL N L++ Y+K G+L +A  LFD 
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTP-CTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP R+++SW A++S  ++                              N  FS EA++ F
Sbjct: 66  MPQRNLVSWTAMISGLSQ------------------------------NSKFS-EAIRTF 94

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M+     PT +   SA+ ACA L  +  GKQ+H   +   +G  +FV + L DMY+K 
Sbjct: 95  CGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKC 154

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  A  +F+ M  ++ VSW  MI GY K G+ ++ +  F++M    +  D+  + + L
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 265 GAC--------------------FQT---------------GRIDDAGRLFHVIKEKDNV 289
           GAC                    F++               G ++ A  +F +  E  NV
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 290 C-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
             +T +I GY +  + E  L +F E+  + + P++F+ SS++ +CA  A+L  G  +H +
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            + +  D+D  VSS L+DMY KCG+ + A   F+ +     ++WNS+++ + Q+G   +A
Sbjct: 335 VMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           + ++++++   +KP++ TF+S+L+ C HA L E G ++F S+   +G+ P  +HY+C+I+
Sbjct: 395 IKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+  + +A + I  +P +PN+  W + L  C + GD + G++AA  L +LEP N+G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
            ++LSN+YA   +WEDV S+R  M+  NVKK   YSW+++  K H F +ED +HP    I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAI 574

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           YE+L  L+ +++ AG+ P T  V  D  +  K K +  HSE++A+A+ LI  P G  PI 
Sbjct: 575 YEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVAFALISMPIG-KPII 633

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVC DCH  +KF S + GR II+RD++RFHHF  G+CSC D W
Sbjct: 634 VKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 199/468 (42%), Gaps = 75/468 (16%)

Query: 6   KLRQAIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K  +AI T       G+  T+ A++  +  C  +  +E+ K++   + L F   +  F+ 
Sbjct: 86  KFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC-LALKFGIGSELFVG 144

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + L   Y+K G +F                               D   +F++MP +D V
Sbjct: 145 SNLEDMYSKCGAMF-------------------------------DACKVFEEMPCKDEV 173

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   I G++  G   EAL  F +M  +      +   S L AC  L   + G+ +H  +
Sbjct: 174 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKC 241
           V      ++FV NALTDMY+K G+++ A  +F   +  RN+VS+  +I GY++  Q +K 
Sbjct: 234 VKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 293

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           + +F E++  G+ P+E T S+++ AC                                  
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G ++ A + F  I +   + W +++  + Q+G  +DA+ +F  M+   V+P+  + 
Sbjct: 354 YGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 413

Query: 327 SSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S+++ C+    +  G    +      GV       S +ID+  + G   +A    N MP
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              N   W S +     +G         +KL++  L+P +   + +LS
Sbjct: 474 FEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGALVLLS 519



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 29/310 (9%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +++ V+ + AK   L  G+ +H   +  G      +++ L++MY KCG  D A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + MP RN+VSW +MI+G +QN +  EA+  +  +      P  F F S + AC      E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G+     ++   GI   L   + + ++  +   +  A  + + +P K + + W+ ++  
Sbjct: 124 MGK-QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED----------------- 544
            +  G+ +   +A + + + E +    +++ S +  ACG  +                  
Sbjct: 182 YSKIGEFEEALLAFKKMID-EEVTIDQHVLCSTL-GACGALKACKFGRSVHSSVVKLGFE 239

Query: 545 ----VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED---RTHPETEIIYEELSKLIK 597
               V +  + M SK     +A +   ID++    VS       + ETE I + LS  + 
Sbjct: 240 SDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV- 298

Query: 598 KLQEAGFSPN 607
           +L+  G  PN
Sbjct: 299 ELRRQGIEPN 308


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/576 (39%), Positives = 341/576 (59%), Gaps = 35/576 (6%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +NT I G       +E+++++  M+K+   P  +T    L ACA+LLD + G ++HG +V
Sbjct: 76  FNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVV 135

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 + FV  +L  +Y K G ID A  +FD +  +N+ +W  +ISGY+  G+ ++ ID
Sbjct: 136 KAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAID 195

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +F+                   AC           +F  + EKD V W++MI GY  NG 
Sbjct: 196 MFRR------------------AC----------SVFDGMLEKDIVSWSSMIQGYASNGL 227

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG---KAVVLGVDDDLLV 360
            ++AL LF +ML+E  RPD +++  V+ +CA+L +L  G        +   LG   + ++
Sbjct: 228 PKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEFLG---NPVL 284

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +ALIDMY KCG  D AW VF  M  +++V WN+ I+G A +G    A  L+ ++ +  +
Sbjct: 285 GTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGI 344

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +PD  TFV +L AC HA L + G+ +F+S+  V  +TP ++HY CM++LLGR+  +D+A 
Sbjct: 345 EPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAH 404

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            L+KS+P + N+++W  LL  C +  D +  E   + L  LEP N+G Y++LSN+Y+A  
Sbjct: 405 QLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSNIYSASH 464

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +WED A IRS M  + +KK   YSWIE+D  VH+F+  D +HP +E IY +L +L+K L+
Sbjct: 465 KWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGELVKDLK 524

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
            +G+ P T  VL D +EEEK   I  HSEKLA+A+ LI        IR++KN+RVCGDCH
Sbjct: 525 ASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPN-DKIRVVKNLRVCGDCH 583

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S   GR II+RD+NRFH F  G+CSCKD W
Sbjct: 584 EAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 148/288 (51%), Gaps = 11/288 (3%)

Query: 7   LRQAIDTLYS-RGQAATEEAYTQ--LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
            +++I+  +S R +  + +++T   L+  C R+ D +L  +L   +     E +  F++ 
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDA-FVNT 147

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL-----RA--LFDKM 116
            L+  Y K G +  A  +FD +P +++ +W A++S +   G  ++      RA  +FD M
Sbjct: 148 SLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGM 207

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
             +D VS+++ I G+A+ G  +EAL +F +M  + F P  Y  V  L ACA+L  L  G 
Sbjct: 208 LEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGN 267

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
                +      GN  +  AL DMYAK G +D A  +F  M  +++V WN  ISG   +G
Sbjct: 268 WASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSG 327

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
             K    LF +M+  G+ PD  T   +L AC   G +D+  + F+ ++
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSME 375



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 138/300 (46%), Gaps = 46/300 (15%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           LGL+ D   ++ +L   F  G  + + R+FH  KE +   + TMI G   N   ++++ +
Sbjct: 36  LGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDSFQESIEI 95

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           ++ M  E + PD F+   ++ +CA+L     G  +HG  V  G + D  V+++L+ +Y K
Sbjct: 96  YHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTSLVSLYGK 155

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNS------------------------------------ 394
           CG  D+A+ VF+ +P +NV +W +                                    
Sbjct: 156 CGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSW 215

Query: 395 --MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG---QNHFDS 449
             MI GYA NG   EAL L+ K+L E  +PD +  V VL AC      E G    N  D 
Sbjct: 216 SSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDR 275

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
              +    P L     +I++  +   +D A ++ + +  K + ++W+  +S  AM G +K
Sbjct: 276 NEFLG--NPVLG--TALIDMYAKCGRMDSAWEVFRGM-RKKDIVVWNAAISGLAMSGHVK 330



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           SL H + VH   + LG+D+D  + + ++      G T+ +  +F+     N+  +N+MI+
Sbjct: 22  SLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIH 81

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGI 456
           G   N    E++ +Y  + +E L PDSFTF  +L AC  A L +         +    G 
Sbjct: 82  GLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC--ARLLDSKLGIKLHGLVVKAGC 139

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                    +++L G+   +D A  +   +P K N   W+ ++S
Sbjct: 140 ESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEK-NVAAWTAIIS 182


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/657 (36%), Positives = 367/657 (55%), Gaps = 40/657 (6%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
           L   R L D +    ++   ALL       ++    ++F+ +   +S +YN  I G A K
Sbjct: 44  LLKTRRLLDPIITEAVLESAALL----LPDTIDYALSIFNHIDKPESSAYNVMIRGLAFK 99

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
                AL +F +M +   +   +T  S L AC+++  LR G+Q+H  I+      N FV 
Sbjct: 100 RSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVE 159

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N L  MYA  G+I  AR +FD M  R++V+WN M+SGY KNG   + + LF+++  L + 
Sbjct: 160 NTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIE 219

Query: 255 PDEVTVSNILGAC-----------------------------------FQTGRIDDAGRL 279
            D+VT+ ++L AC                                    + G++D A +L
Sbjct: 220 FDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL 279

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  + ++D V W+ MI GY Q  + ++AL LF+EM   +V P++ ++ SV+ SCA L + 
Sbjct: 280 FDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAY 339

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ VH       +   + + + LID Y KCG  D +  VF  M  +NV +W ++I G 
Sbjct: 340 ETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGL 399

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           A NG+   AL  +  +L+ ++KP+  TF+ VLSAC HA L ++G++ F+S+     I P 
Sbjct: 400 ANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPR 459

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           ++HY CM+++LGR+  +++A   I ++P  PN+++W TLL+ C    +I+  E +  H+ 
Sbjct: 460 IEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHIT 519

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
            LEP ++G YI+LSN YA  GR ED   +RS +K K +KK    S IE+D  VH+F SED
Sbjct: 520 RLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSED 579

Query: 580 RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
             H  ++ I++ L K++K+++  G+ PNT     + +EE K  S+ +HSEKLA+AY LI+
Sbjct: 580 GEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIAYGLIR 639

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
                T IRI KN+R+C DCH   KF S +  R II+RD NRFHHF  G CSC D W
Sbjct: 640 TSPRTT-IRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDYW 695



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 201/409 (49%), Gaps = 69/409 (16%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
            ++ ++  C+R+  +   +++ + +  + ++ N  F+ N L+  YA  G++  AR +FD 
Sbjct: 123 TFSSVLKACSRMKALREGEQVHALILKSGFKSNE-FVENTLIQMYANCGQIGVARHVFDG 181

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP R I++WN++LS + ++G       L+D                        E +++F
Sbjct: 182 MPERSIVAWNSMLSGYTKNG-------LWD------------------------EVVKLF 210

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            ++ + R E  D T +S L AC +L +L  G+ I   IV   L  N  +  +L DMYAK 
Sbjct: 211 RKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKC 270

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G++D AR LFD M+ R++V+W+ MISGY +  + K+ ++LF EMQ   + P+EVT+ ++L
Sbjct: 271 GQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVL 330

Query: 265 GAC-----FQTGR------------------------------IDDAGRLFHVIKEKDNV 289
            +C     ++TG+                              ID +  +F  +  K+  
Sbjct: 331 YSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVF 390

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGK 348
            WT +I G   NG+ + AL  F+ ML  DV+P+  +   V+S+C+    +  G+ + +  
Sbjct: 391 TWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSM 450

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMI 396
                ++  +     ++D+  + G  ++A+   + MP   N V W +++
Sbjct: 451 RRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLL 499


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/644 (36%), Positives = 364/644 (56%), Gaps = 42/644 (6%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +IS+ AL    + SG +   R LF +M   D    NT I G+A      EA+ ++  M +
Sbjct: 49  LISFLAL----SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVE 104

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
                 +YT+   L ACA+L  ++ G++ H +++    G ++FV NAL   Y   G    
Sbjct: 105 RGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGC 164

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF 268
           A  +FD    R++V+WN+MI+ +L  G  +K  DL  EM +L  L PDEVT+ +++ AC 
Sbjct: 165 ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACA 224

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
           Q G                                    I+ A  +F+ I+EKD + WT+
Sbjct: 225 QLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTS 284

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+ G  ++G  ++AL LF +M    +  D+ ++  V+S+CA+  +L  G+ +H       
Sbjct: 285 MLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFE 344

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           ++ DL++ +AL+DMY KCG  D A  VF  M  RNV +WN++I G A +G   +A++L+D
Sbjct: 345 INCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFD 404

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++  + L PD  TF+++L AC HA L + G   F ++     I P ++HY C+++LL R+
Sbjct: 405 QMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRA 464

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             VD A+  I+++P K NS++W+TLL  C   G     E   R + ELEP + G Y+MLS
Sbjct: 465 RKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLS 524

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA   +W+    +R  MK+K ++K    SWIE++  +H+FV+ DR+H +TE IY  + 
Sbjct: 525 NLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIE 584

Query: 594 KLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
           ++ +++  + G  P T  VL D +EEEK  S+  HSEKLA+A  LI  P G +PIRI+KN
Sbjct: 585 EMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSG-SPIRIVKN 643

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH F+K  S +  R I+ RD +RFHHF  G+CSC D W
Sbjct: 644 LRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 249/684 (36%), Positives = 384/684 (56%), Gaps = 47/684 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++T+L N  ++ Y+K G L YAR  FD     ++ S+N ++ A+A+   +   R LFD+ 
Sbjct: 41  SSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEN 100

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  D+VSYNT I+G+A+   +  A+ +F RM++  FE   +T    + AC   +DL   K
Sbjct: 101 PQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFEVDGFTLSGLIAACCDRVDLI--K 158

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKN 235
           Q+H   V G       V NA    Y+KGG + +A  +F  M+  R+ VSWN MI  Y ++
Sbjct: 159 QLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQH 218

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------FQ 269
            +  K + L++EM   G   D  T++++L A                             
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVG 278

Query: 270 TGRID------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLS 316
           +G ID            D+ ++F  I   D V W TMI GY+ N +  E+A+  F +M  
Sbjct: 279 SGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQR 338

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTD 375
              RPD  S   V S+C+ L+S   G+ +HG A+   +  + + V++ALI +Y K G   
Sbjct: 339 IGHRPDDCSFVCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLL 398

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           DA  VF+ MP  N VS+N MI GYAQ+G   EAL LY ++L   + P++ TFV++LSAC 
Sbjct: 399 DARRVFDRMPELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACA 458

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           H    + GQ +F+++     I P  +HY+CMI+LLGR+  +++A   I ++P+KP S+ W
Sbjct: 459 HCGKVDEGQKYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAW 518

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           + LL  C    ++   E AA+ L  ++P+ A PY+ML+NMYA  G+WE++AS+R SM+ K
Sbjct: 519 AALLGACRKHKNMALAERAAKELMVMQPLAATPYVMLANMYADAGKWEEMASVRKSMRGK 578

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL--- 612
            ++K    SWIE+  K H FV+ED +HP    + E L +++KK+++ G+  + K  +   
Sbjct: 579 RIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKE 638

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            +  E E+   + +HSEKLA+A+ L+    G   I ++KN+R+CGDCH  +KF S + GR
Sbjct: 639 DEAGEGEEEMRLGHHSEKLAVAFGLMSTRDG-EEIVVVKNLRICGDCHNAIKFMSAVAGR 697

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            II+RD+ RFH F  G CSC D W
Sbjct: 698 EIIVRDNLRFHCFKDGKCSCGDYW 721



 Score = 46.2 bits (108), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L+ G+ +H   V   V     +S+  +++Y KCG    A   F+     NV S+N ++  
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKA 83

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           YA++ +   A  L+D    EN +PD+ ++ +++S 
Sbjct: 84  YAKDSKIHIARQLFD----ENPQPDTVSYNTLISG 114


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 372/643 (57%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A+ G ++D   +F+ M  RD VS+NT ++G        +AL  F  MQ
Sbjct: 282 DVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQ 341

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   + ++ + A  +  +L +GK++H   +   L  N+ + N L DMYAK   + 
Sbjct: 342 NSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVK 401

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
                F+ M+ ++L+SW  +I+GY +N    + I+LF+++Q+ G++ D + + ++L AC 
Sbjct: 402 YMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS 461

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G ID A R F  I+ KD V WT+M
Sbjct: 462 GLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSM 521

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I     NG   +AL LF  +   +++PD  +I S +S+ A L+SL  G+ +HG  +  G 
Sbjct: 522 ITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGF 581

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +  ++S+L+DMY  CG  +++  +F+ +  R+++ W SMIN    +G   +A+AL+ K
Sbjct: 582 FLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKK 641

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  +N+ PD  TF+++L AC H+ L   G+  F+ +   + + P  +HYACM++LL RS+
Sbjct: 642 MTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSN 701

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   ++++P KP+S IW  LL  C +  + + GE+AA+ L + +  N+G Y ++SN
Sbjct: 702 SLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISN 761

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           ++AA GRW DV  +R  MK   +KK    SWIE+DNK+H F++ D++HP+T+ IY +L++
Sbjct: 762 IFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQ 821

Query: 595 LIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             K L+ + G+   TK V H+  EEEK + +  HSE+LAL Y L+  P G T IRI KN+
Sbjct: 822 FTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYGLLVTPKG-TCIRITKNL 880

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F K AS++  R +++RD+NRFHHF  G CSC D W
Sbjct: 881 RICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 151/536 (28%), Positives = 249/536 (46%), Gaps = 78/536 (14%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + GS++D   +FD+M  R   S+N  +  F + G   EA++++  M+       
Sbjct: 85  LVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAID 144

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             T  S L AC  L + R G +IHG  V    G  VFV NAL  MY K G++  AR LFD
Sbjct: 145 ACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFD 204

Query: 216 --RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD----------------- 256
              M   + VSWN +IS ++  G   + + LF+ MQ +G+  +                 
Sbjct: 205 GIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFV 264

Query: 257 -----------------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                            +V V+N L A + + GR++DAGR+F  +  +D V W T++ G 
Sbjct: 265 KLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGL 324

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN    DAL  F +M +   +PD+ S+ +++++  +  +L  G+ VH  A+  G+D ++
Sbjct: 325 VQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNM 384

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + + L+DMY KC         F  M  ++++SW ++I GYAQN   LEA+ L+ K+  +
Sbjct: 385 QIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVK 444

Query: 419 NLKPDSFTFVSVLSAC-----------LHADLFERGQNHF---DSISAVHGITPSLDH-- 462
            +  D     SVL AC           +H  +F+R        ++I  V+G    +D+  
Sbjct: 445 GMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYAR 504

Query: 463 -------------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCA--- 503
                        +  MI     +    +A++L  SL     +P+S+   + LS  A   
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 504 --MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
              KG   HG +  +  F   PI +     L +MYA CG  E+   +  S+K +++
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASS----LVDMYACCGTVENSRKMFHSVKQRDL 616



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 211/494 (42%), Gaps = 78/494 (15%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPT--DYTHVSALNACA 167
           ++   +P++  +S NT      NKG  + A Q  + +       P+  ++ H   L+ C 
Sbjct: 4   SILTPLPLK-PISVNTL-----NKGTLKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCV 57

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
               L +G+Q+H  ++  +L  + F+   L  MY K G +  A  +FD M+ R + SWN 
Sbjct: 58  AAKALPQGQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNA 115

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           ++  ++ +G+  + I+L+++M++LG+  D  T  ++L AC                    
Sbjct: 116 LMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 268 ---------------FQTGRIDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                           + G +  A  LF   +++++D V W ++I  +   G   +AL L
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M    V  + ++  + +      + +  G  +HG  +      D+ V++ALI MY K
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  +DA  VF  M  R+ VSWN++++G  QN    +AL  +  +     KPD  + +++
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 431 LSACLHADLFERGQ--------NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           ++A   +    +G+        N  DS   +      +    C +  +G + +     DL
Sbjct: 356 IAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDL 415

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I           W+T+++              A++ F LE IN    + +  M       
Sbjct: 416 IS----------WTTIIA------------GYAQNEFHLEAINLFRKVQVKGMDVDPMMI 453

Query: 543 EDVASIRSSMKSKN 556
             V    S +KS+N
Sbjct: 454 GSVLRACSGLKSRN 467



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/201 (29%), Positives = 107/201 (53%)

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           K  L DI+  NA+++ +   G +   R  F+ +  +D VS+ + I    + G   EAL++
Sbjct: 478 KRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALEL 537

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  +++   +P     +SAL+A A L  L++GK+IHG ++         + ++L DMYA 
Sbjct: 538 FYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYAC 597

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G ++ +R +F  +  R+L+ W  MI+    +G   K I LF++M    + PD +T   +
Sbjct: 598 CGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLAL 657

Query: 264 LGACFQTGRIDDAGRLFHVIK 284
           L AC  +G + +  R F ++K
Sbjct: 658 LYACSHSGLMVEGKRFFEIMK 678


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/657 (36%), Positives = 359/657 (54%), Gaps = 37/657 (5%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
           L +A  + D     ++   +AL+  + +   V   R +FD MP RD+V +NT I G    
Sbjct: 129 LLHAHSIIDGYG-SNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKN 187

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
               +++Q+F  M  D       T  + L A A+L +L+ G  I    +    G   +V 
Sbjct: 188 CCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVL 247

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
             L  +Y+K G+++ AR LF R+N  +L+++N MISG+  NG  +  + LF+E+   G  
Sbjct: 248 TGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGER 307

Query: 255 PDEVTVSNIL----------------GACFQTG-------------------RIDDAGRL 279
               T+  ++                G C ++G                    ID A  L
Sbjct: 308 VSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHL 367

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F    EK  V W  MI GYTQNG  E A+ LF EM+  +  P+  +I++++S+CA+L SL
Sbjct: 368 FDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSL 427

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ VH       ++ ++ VS+AL+DMY KCG   +AW +F+ M  +N V+WN+MI GY
Sbjct: 428 SFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGY 487

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
             +G   EAL LY+++L     P + TF+SVL AC HA L   G+  F ++   + I P 
Sbjct: 488 GLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPL 547

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           ++HYACM+++LGRS  ++KA++ IK +P +P   +W TLL  C +  D     +A+  LF
Sbjct: 548 IEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLF 607

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
           EL+P + G Y++LSN+Y+    +   ASIR  +K + + K    + IE++   H FVS D
Sbjct: 608 ELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGD 667

Query: 580 RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
           R+H     IY +L KL  K++E G+   T   LHD +EEEK  ++  HSEKLA+A+ LI 
Sbjct: 668 RSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLIT 727

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              G   IRI+KN+RVC DCH   KF S I  R I++RD+NRFHHF  G CSC D W
Sbjct: 728 TEPG-NEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/466 (26%), Positives = 216/466 (46%), Gaps = 46/466 (9%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQ 168
           RALF  +P  D   +N  + GF+       ++ +++ ++++    P ++T+  A+ AC+ 
Sbjct: 64  RALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSN 123

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              L     +H   ++   G NVFV +AL D+Y K   +  AR +FD M  R+ V WN M
Sbjct: 124 DKHLM---LLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTM 180

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--------------CF------ 268
           I+G +KN      I LF+EM   G+  D  TV+ +L A              C       
Sbjct: 181 INGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGF 240

Query: 269 ---------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G ++ A  LF  I   D + +  MI G+T NG  E ++ LF E
Sbjct: 241 GFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRE 300

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           +L    R    +I  ++   +    L+    +HG  V  G+  +  VS+A   +Y K   
Sbjct: 301 LLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNE 360

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D A  +F+  P + VV+WN+MI+GY QNG    A++L+ ++++    P++ T  ++LSA
Sbjct: 361 IDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSA 420

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C        G+     I +   + P++     ++++  +  ++ +A  L  S+  K N++
Sbjct: 421 CAQLGSLSFGKWVHHLIKS-ENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTV 478

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYA 537
            W+T++    + G   +G  A +   E+  +   P     LS +YA
Sbjct: 479 TWNTMIFGYGLHG---YGHEALKLYNEMLHLGYNPSAVTFLSVLYA 521



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 168/405 (41%), Gaps = 70/405 (17%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y+K G +  AR LF ++   D+I++NA++S    +G  +    LF ++        
Sbjct: 250 LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVS 309

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           ++ I G                       P  + H+    AC+          IHG  V 
Sbjct: 310 SSTIVGLI-----------------PLHSPFGHLHL----ACS----------IHGFCVK 338

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             +  N  V  A T +Y K  EID AR LFD    + +V+WN MISGY +NG  +  I L
Sbjct: 339 SGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISL 398

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQ----------------------------------- 269
           F+EM      P+ VT++ IL AC Q                                   
Sbjct: 399 FKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAK 458

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I +A +LF  + EK+ V W TMI GY  +G   +AL L+NEML     P   +  SV
Sbjct: 459 CGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSV 518

Query: 330 VSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR- 387
           + +C+    +  G ++ H       ++  +   + ++D+  + G  + A      MP   
Sbjct: 519 LYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEP 578

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
               W +++ G     +D +   L  + L E L P S  +  +LS
Sbjct: 579 GPAVWGTLL-GACMIHKDTDIARLASERLFE-LDPGSVGYYVLLS 621



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 167/380 (43%), Gaps = 32/380 (8%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G   D  T++ +    F       A  LF  + + D   +  ++ G++ N     ++ L+
Sbjct: 39  GYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLY 98

Query: 312 NEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
             +  + ++ PD F+ +  V++C+      H  ++H  +++ G   ++ V SAL+D+YCK
Sbjct: 99  THLRRNTNLSPDNFTYAFAVAACSNDK---HLMLLHAHSIIDGYGSNVFVGSALVDLYCK 155

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
                 A  VF+ MP R+ V WN+MING  +N    +++ L+ +++ + ++ DS T  +V
Sbjct: 156 FSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAV 215

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L A       + G      ++   G          +I+L  +  DV+ A  L + + ++P
Sbjct: 216 LPAAAELQELKVGMG-IQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRI-NRP 273

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARH-LFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           + + ++ ++S     G  +      R  LF  E +++   + L  +++  G      SI 
Sbjct: 274 DLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIH 333

Query: 550 S-SMKSK---NVKKFAAYSWI-----EIDNKVHKFVSEDRTHPETEIIY----------- 589
              +KS    N     A++ I     EID   H F   D +  +T + +           
Sbjct: 334 GFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLF---DESPEKTVVAWNAMISGYTQNG 390

Query: 590 --EELSKLIKKLQEAGFSPN 607
             E    L K++ +  F+PN
Sbjct: 391 STETAISLFKEMMKTEFTPN 410



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 78/192 (40%), Gaps = 33/192 (17%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T ++  C ++  +   K +   +     EPN  ++   L+  YAK G +  A  LFD M 
Sbjct: 415 TTILSACAQLGSLSFGKWVHHLIKSENLEPNI-YVSTALVDMYAKCGNISEAWQLFDSMS 473

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++ ++W                               NT I G+   G+  EAL++++ 
Sbjct: 474 EKNTVTW-------------------------------NTMIFGYGLHGYGHEALKLYNE 502

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQI-HGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M    + P+  T +S L AC+    +  G++I H  +    +   +     + D+  + G
Sbjct: 503 MLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSG 562

Query: 206 EIDKARWLFDRM 217
           +++KA     +M
Sbjct: 563 QLEKALEFIKKM 574


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/638 (35%), Positives = 356/638 (55%), Gaps = 39/638 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A +  G +   R +FD +P      +N  I G++     ++AL ++S MQ  R  P 
Sbjct: 59  LIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPD 118

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T    L AC+ L  L+ G+ +H ++       +VFV+N L  +YAK   +  AR +F+
Sbjct: 119 SFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFE 178

Query: 216 --RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--CFQ-- 269
              +  R +VSW  ++S Y +NG+P + +++F  M+ + + PD V + ++L A  C Q  
Sbjct: 179 GLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDL 238

Query: 270 -------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G++  A  LF  +K  + + W  MI GY
Sbjct: 239 KQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGY 298

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            +NG   +A+ +F+EM+++DVRPD  SI+S +S+CA++ SL   + ++         DD+
Sbjct: 299 AKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDV 358

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +SSALIDM+ KCG  + A  VF+    R+VV W++MI GY  +G+  EA++LY  + + 
Sbjct: 359 FISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERG 418

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  TF+ +L AC H+ +   G   F+ + A H I P   HYAC+I+LLGR+  +D+
Sbjct: 419 GVHPNDVTFLGLLMACNHSGMVREGWWFFN-LMADHKINPQQQHYACVIDLLGRAGHLDQ 477

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A ++IK +P +P   +W  LLS C     ++ GE AA+ LF ++P N G Y+ LSN+YAA
Sbjct: 478 AYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAA 537

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              W+ VA +R  MK K + K    SW+E+  ++  F   D++HP  E I  ++  +  +
Sbjct: 538 ARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESR 597

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+E GF  N    LHD  +EE  +++C HSE++A+AY LI  P G TP+RI KN+R C +
Sbjct: 598 LKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQG-TPLRITKNLRACVN 656

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K  S ++ R I++RD+NRFHHF  G CSC D W
Sbjct: 657 CHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 160/314 (50%), Gaps = 41/314 (13%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQIH +++V  L  + F+   L    +  G+I  AR +FD +    +  WN +I GY +N
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTG-------- 271
              +  + ++  MQL  ++PD  T  ++L AC                F+ G        
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQ 157

Query: 272 -----------RIDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                      R+  A  +F    + E+  V WT ++  Y QNG+  +AL +F+ M   D
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDDLLVSSALIDMYCKCGVTDD 376
           V+PD  ++ SV+++   L  L  G+ +H   V +G  ++ DLL+S  L  MY KCG    
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS--LNTMYAKCGQVAT 275

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ M + N++ WN+MI+GYA+NG   EA+ ++ +++ ++++PD+ +  S +SAC  
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 437 ADLFERGQNHFDSI 450
               E+ ++ ++ +
Sbjct: 336 VGSLEQARSMYEYV 349



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           +LGL      ++ ++ A    G I  A ++F  +       W  +I GY++N   +DAL+
Sbjct: 46  VLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALL 105

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           +++ M    V PD F+   ++ +C+ L+ L  G+ VH +   LG D D+ V + LI +Y 
Sbjct: 106 MYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYA 165

Query: 370 KCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           KC     A TVF    +P R +VSW ++++ YAQNG+ +EAL ++  + + ++KPD    
Sbjct: 166 KCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVAL 225

Query: 428 VSVLSA--CLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIK 484
           VSVL+A  CL  DL +    H   +     I P  L     M    G+ +      D +K
Sbjct: 226 VSVLNAFTCLQ-DLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK 284

Query: 485 SLPHKPNSLIWSTLLSVCAMKG 506
           S    PN ++W+ ++S  A  G
Sbjct: 285 S----PNLILWNAMISGYAKNG 302



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 117/196 (59%), Gaps = 3/196 (1%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +IS N +   +A+ G V   + LFDKM   + + +N  I+G+A  G++REA+ +F  M  
Sbjct: 260 LISLNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMIN 316

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
               P   +  SA++ACAQ+  L + + ++  +   +   +VF+ +AL DM+AK G ++ 
Sbjct: 317 KDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEG 376

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           AR +FDR  +R++V W+ MI GY  +G+ ++ I L++ M+  G++P++VT   +L AC  
Sbjct: 377 ARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNH 436

Query: 270 TGRIDDAGRLFHVIKE 285
           +G + +    F+++ +
Sbjct: 437 SGMVREGWWFFNLMAD 452



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 118/278 (42%), Gaps = 46/278 (16%)

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  D F  +S++ S    A L   + +H + +VLG+     + + LI      G    A 
Sbjct: 18  IHSDSF-YASLIDSATHKAQL---KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFAR 73

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---- 434
            VF+ +P   +  WN++I GY++N    +AL +Y  +    + PDSFTF  +L AC    
Sbjct: 74  QVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLS 133

Query: 435 -------LHADLFERG-------QN----------HFDSISAVHGITP----SLDHYACM 466
                  +HA +F  G       QN             S   V    P    ++  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 467 INLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE----MAARHLF 519
           ++   ++ +  +A+++   ++ +  KP+ +   ++L+      D+K G        +   
Sbjct: 194 VSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E+EP      I L+ MYA CG+      +   MKS N+
Sbjct: 254 EIEP---DLLISLNTMYAKCGQVATAKILFDKMKSPNL 288



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 11/206 (5%)

Query: 70  AKSGKLFYARDLFDKMPLRD----IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           A+ G L  AR +++ +   D    +   +AL+   A+ GSV+  R +FD+   RD V ++
Sbjct: 334 AQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWS 393

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I G+   G +REA+ ++  M++    P D T +  L AC     +R G      +   
Sbjct: 394 AMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADH 453

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDL 244
            +         + D+  + G +D+A  +   M  +  V+ W  ++S   K+   +  +  
Sbjct: 454 KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVE--LGE 511

Query: 245 FQEMQLLGLNPDE----VTVSNILGA 266
           +   QL  ++P      V +SN+  A
Sbjct: 512 YAAQQLFSIDPSNTGHYVQLSNLYAA 537


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/646 (36%), Positives = 365/646 (56%), Gaps = 44/646 (6%)

Query: 93  WNALLSA-----HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           WN  ++A     ++R G     R+LFD MP RD  S+N  I+G    G + +AL V   M
Sbjct: 248 WNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEM 307

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +  +    T VS L  C QL D+     IH  ++   L  ++FV NAL +MYAK G +
Sbjct: 308 RLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNL 367

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR  F +M   ++VSWN +I+ Y +N  P      F +MQL G  PD +T+ ++    
Sbjct: 368 EDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIV 427

Query: 268 FQT------------------------------------GRIDDAGRLFHVIKEKDNVCW 291
            Q+                                    G +D A ++F +I  KD + W
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISW 487

Query: 292 TTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            T+I GY QNG   +A+ ++  M   +++ P++ +  S++ + A + +L  G  +HG+ +
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVI 547

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              +  D+ V++ LID+Y KCG   DA ++F  +P  + V+WN++I+ +  +G   + L 
Sbjct: 548 KTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLK 607

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++L E +KPD  TFVS+LSAC H+   E G+  F  +   +GI PSL HY CM++LL
Sbjct: 608 LFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLL 666

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  ++ A   IK +P +P++ IW  LL  C + G+I+ G+ A+  LFE++  N G Y+
Sbjct: 667 GRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYV 726

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA  G+WE V  +RS  + + +KK   +S IE++ KV  F + +++HP+ + IYE
Sbjct: 727 LLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYE 786

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL  L  K++  G+ P+   VL D +E+EK   +  HSE+LA+A+ +I  P   +PIRI 
Sbjct: 787 ELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SPIRIF 845

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVCGDCH   KF S I  R I++RDSNRFHHF  G CSC D W
Sbjct: 846 KNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 147/539 (27%), Positives = 249/539 (46%), Gaps = 98/539 (18%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
            + F+  RL++ YA  G +  +R  FD++P +D+ +WN+++SA+  +G            
Sbjct: 149 QSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNG------------ 196

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                  ++ AI  F            +  +      P  YT    L AC  L+D   G+
Sbjct: 197 ------HFHEAIGCF------------YQLLLVSEIRPDFYTFPPVLKACGTLVD---GR 235

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH          NVFV  +L  MY++ G    AR LFD M  R++ SWN MISG ++NG
Sbjct: 236 RIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNG 295

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI----------------------- 273
              + +D+  EM+L G+  + VTV +IL  C Q G I                       
Sbjct: 296 NAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSN 355

Query: 274 ------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                       +DA + F  +   D V W ++I  Y QN     A   F +M     +P
Sbjct: 356 ALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQP 415

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTV 380
           D  ++ S+ S  A+     + + VHG  +  G + +D+++ +A++DMY K G+ D A  V
Sbjct: 416 DLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKV 475

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHAD 438
           F ++  ++V+SWN++I GYAQNG   EA+ +Y K+++E   + P+  T+VS+L A  H  
Sbjct: 476 FEIILVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQGTWVSILPAYAHVG 534

Query: 439 LFERGQNHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
             ++G         +HG        LD +   C+I++ G+   +  A+ L   +P + +S
Sbjct: 535 ALQQGMR-------IHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SS 586

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC--------GRW 542
           + W+ ++S   + G   H E   +   E+      P ++   ++ +AC        G+W
Sbjct: 587 VTWNAIISCHGIHG---HAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKW 642



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 38/348 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A+ G+++D R  F +M I D VS+N+ IA +        A   F +MQ
Sbjct: 350 DLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQ 409

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEI 207
            + F+P   T VS  +  AQ  D +  + +HG I+  G L  +V + NA+ DMYAK G +
Sbjct: 410 LNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLL 469

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGA 266
           D A  +F+ +  ++++SWN +I+GY +NG   + I++++ M+    + P++ T  +IL A
Sbjct: 470 DSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPA 529

Query: 267 ------------------------------CF-----QTGRIDDAGRLFHVIKEKDNVCW 291
                                         C      + GR+ DA  LF+ + ++ +V W
Sbjct: 530 YAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTW 589

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I  +  +G  E  L LF EML E V+PD  +  S++S+C+    +  G+        
Sbjct: 590 NAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQE 649

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
            G+   L     ++D+  + G  + A+     MP +   S W +++  
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGA 697



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 194/450 (43%), Gaps = 60/450 (13%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            K +H  +VV     ++F+   L ++YA  G++  +R  FD++  +++ +WN MIS Y+ 
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 235 NGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGAC-----------------FQ------- 269
           NG   + I  F ++ L+  + PD  T   +L AC                 FQ       
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVAA 254

Query: 270 --------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G    A  LF  +  +D   W  MI G  QNG    AL + +EM  E ++ 
Sbjct: 255 SLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKM 314

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +  ++ S++  C +L  +    ++H   +  G++ DL VS+ALI+MY K G  +DA   F
Sbjct: 315 NFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAF 374

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
             M   +VVSWNS+I  Y QN   + A   + K+     +PD  T VS+ S         
Sbjct: 375 QQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCK 434

Query: 435 ----LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
               +H  +  RG    D +         +D YA  + LL  +  V + + L+K +    
Sbjct: 435 NSRSVHGFIMRRGWLMEDVVIG----NAVVDMYA-KLGLLDSAHKVFEII-LVKDV---- 484

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASI 548
             + W+TL++  A  G         + + E + I  N G ++ +   YA  G  +    I
Sbjct: 485 --ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542

Query: 549 RSSMKSKNVK--KFAAYSWIEIDNKVHKFV 576
              +   N+    F A   I++  K  + V
Sbjct: 543 HGRVIKTNLHLDVFVATCLIDVYGKCGRLV 572



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 65/200 (32%), Positives = 116/200 (58%), Gaps = 1/200 (0%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D++  NA++  +A+ G +     +F+ + ++D +S+NT I G+A  G + EA++V+  
Sbjct: 450 MEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKM 509

Query: 147 MQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M++     P   T VS L A A +  L++G +IHG+++  NL  +VFV   L D+Y K G
Sbjct: 510 MEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCG 569

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A  LF ++   + V+WN +IS +  +G  +K + LF EM   G+ PD VT  ++L 
Sbjct: 570 RLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLS 629

Query: 266 ACFQTGRIDDAGRLFHVIKE 285
           AC  +G +++    F +++E
Sbjct: 630 ACSHSGFVEEGKWCFRLMQE 649


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 382/682 (56%), Gaps = 58/682 (8%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G + + R +  K  L     WN+L++ + + G++Q    LF+++  +D VS+N  IA 
Sbjct: 242 KYGAMVHGRII--KAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAA 299

Query: 131 FANKGFSREALQVFSRMQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
              +G    AL +F RM K     +P   T +S L+A + L  LR G++IH  I   +L 
Sbjct: 300 NEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLE 359

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +  + N+L   Y+K  E+ KAR +F+R+  R+++SWN M++GY +N Q  +C D+F+ M
Sbjct: 360 VDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRM 419

Query: 249 QLLGLNPDEVTVSNILGAC---------FQTG---------------------------- 271
            L G+ PD  +++ I  A          F+ G                            
Sbjct: 420 MLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMY 479

Query: 272 ----RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
               RI DA ++F  +K +D+  W  M+ GY++N K ED L++F ++L +    D  S+S
Sbjct: 480 AKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLS 539

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVL--GVD----DDLL-VSSALIDMYCKCGVTDDAWTV 380
            +++SC +L SL  G+  H     L  G D    D LL +++ALI MY KCG   DA  V
Sbjct: 540 ILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQV 599

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  M  ++V SW +MI G A +G  +EAL L++++  + +KP+  TF+++L AC H  L 
Sbjct: 600 FLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLV 659

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-----LPHKPNSL-I 494
           + G  +FDS+   +G++PS++HYACMI+L GRS   D+A  L++       P+  + L +
Sbjct: 660 QEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNL 719

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LL  C     +  G  AA  + ELEP +   YI+L+N+YA+ G WED   +R +M+ 
Sbjct: 720 WKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRD 779

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           K ++K    SWI+  N+ H FV+ D  HP+ + IYE+L++L    +  G+ P T+LVLHD
Sbjct: 780 KGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHD 839

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
             E EK   +  HSEKLA+++ L+    G   IR+MKN+RVC DCH +MKFAS +  R I
Sbjct: 840 VDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREI 899

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           +LRDS RFH F  G+CSC D W
Sbjct: 900 LLRDSQRFHLFRDGSCSCGDYW 921



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 246/528 (46%), Gaps = 59/528 (11%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           R LH + ++ +L +    F    +    + +  L + +    ++  + LFD  P RD +S
Sbjct: 29  RFLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVIS 88

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           ++  IA ++  G   +A  +F +M  +  +P  ++  S L       ++   +Q+HG  +
Sbjct: 89  WSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSI 148

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN--NRNLVSWNLMISGYLKNGQPKKC 241
               G +  +R A   MY++ G ++ A+ +FD  +    +++ WN +I+ Y+ +G   + 
Sbjct: 149 RTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEV 208

Query: 242 IDLFQEMQLLG-LNPDEVTVSNILGACFQT----------GRIDDAG------------- 277
           + LF +M  +G + P E+T ++++ AC  +          GRI  AG             
Sbjct: 209 LRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLVTF 268

Query: 278 -----------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKF 324
                      +LF  I  KD V W  MI    Q G+ E+AL LF  ML  +  V+P++ 
Sbjct: 269 YGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRV 328

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +  S++S+ + L++L  G+ +H     L ++ D  ++++LI  Y KC     A  +F  +
Sbjct: 329 TFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERL 388

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R+++SWNSM+ GY QN Q      ++ +++   ++PDS +   + +A   A     G 
Sbjct: 389 LLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNA---ASRDSSGL 445

Query: 445 NHFDSISAVHG-----ITP---SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
            +F     +HG     ITP   SL     ++ +  + + +  A  + K + ++ +S  W+
Sbjct: 446 IYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNR-DSYSWN 504

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGR 541
            +     M G  ++ +     +  L+ +  G    ++ LS +  +CGR
Sbjct: 505 AM-----MDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGR 547



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 220/475 (46%), Gaps = 76/475 (16%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIR--DSVSYNTAIAGFANKGFSREALQVFSRM-QKDR 151
           A ++ ++R G ++D + +FD+  +   D + +N+ IA +   G   E L++F +M     
Sbjct: 161 AWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGV 220

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL-GGNVFVRNALTDMYAKGGEIDKA 210
             PT+ T+ S +NAC    + + G  +HG+I+   L   N++  N+L   Y K G +  A
Sbjct: 221 VAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLW--NSLVTFYGKCGNLQHA 278

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL--GLNPDEVTVSNILGA-- 266
             LF+R++ +++VSWN MI+   + G+ +  + LF+ M  +   + P+ VT  ++L A  
Sbjct: 279 SQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVS 338

Query: 267 ---CFQTGR------------------------------IDDAGRLFHVIKEKDNVCWTT 293
                + GR                              +  A  +F  +  +D + W +
Sbjct: 339 GLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNS 398

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK----LASLYHGQVVHGKA 349
           M+ GY QN ++     +F  M+   + PD  S++ + ++ ++    L     G+ +HG  
Sbjct: 399 MLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYI 458

Query: 350 V--VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           +  +      L VS+A++ MY K     DA  +F  M  R+  SWN+M++GY++N +  +
Sbjct: 459 LRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFED 518

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSAC--------------LHADLFERGQN--HFDSIS 451
            L ++  +L++    D  +   +L++C              + A LF  GQ+  H DS+ 
Sbjct: 519 VLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFN-GQDCPHQDSLL 577

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +++           +I++  +   +  A  +   +  K +   W+ +++ CA  G
Sbjct: 578 SINN---------ALISMYSKCGSIKDAAQVFLKMERK-DVFSWTAMITGCAHHG 622



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 160/331 (48%), Gaps = 22/331 (6%)

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           R+  A +LF     +D + W+ +I  Y++ G    A  LF +M+ E ++P+ FS++S++ 
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN--MMPTRNV 389
                  +   + +HG ++  G   D  + +A I MY +CGV +DA  VF+   +   ++
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFD 448
           + WNS+I  Y  +G  +E L L+ K++    + P   T+ SV++AC  +     G+  + 
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSS-----GEEKYG 244

Query: 449 SISAVHG--ITPSLDH---YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           ++  VHG  I   L+    +  ++   G+  ++  A  L + +  K + + W+ +++   
Sbjct: 245 AM--VHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRK-DVVSWNAMIAANE 301

Query: 504 MKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMK-SKNVKKFA 561
            +G+ ++     R + ++E P+       LS + A  G    ++++R   +   ++ + +
Sbjct: 302 QRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSG----LSALRCGREIHAHIFRLS 357

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
                 I N +  F S+ R   +   I+E L
Sbjct: 358 LEVDTSITNSLITFYSKCREVGKAREIFERL 388



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 167/403 (41%), Gaps = 66/403 (16%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L  YAK  ++  A  +F  M  RD  SWNA++  ++R+   +D+             
Sbjct: 473 NAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDV------------- 519

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGK 181
                             L +F  + K  F P D+  +S  L +C +L+ L+ GKQ H  
Sbjct: 520 ------------------LMIFLDILKQGF-PLDHVSLSILLTSCGRLVSLQLGKQFHA- 559

Query: 182 IVVGNLGGN--------VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           +V     G         + + NAL  MY+K G I  A  +F +M  +++ SW  MI+G  
Sbjct: 560 VVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCA 619

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC--- 290
            +G   + + LF+ M+  G+ P++VT   +L AC   G + +    F  +     +    
Sbjct: 620 HHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSI 679

Query: 291 --WTTMIVGYTQNGKEEDA--LILFNEMLSEDVRPDKFSISSV-VSSCAKLASLYHGQVV 345
             +  MI  + ++G+ + A  L+ F   L +    D  ++  V + +C     L  G   
Sbjct: 680 EHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEA 739

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-----VSW-------N 393
             K + L  +D+      L ++Y   G+ +DA  V   M  + +      SW       +
Sbjct: 740 ATKILELEPEDE-ATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRH 798

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
             + G   + Q  E   +Y+KL Q N       +V +    LH
Sbjct: 799 VFVAGDVYHPQRKE---IYEKLAQLNYSCRRMGYVPMTELVLH 838


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/585 (37%), Positives = 342/585 (58%), Gaps = 7/585 (1%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F  +P  +   +N  I G        +A+  + RM  D   P  +T+ +   AC+    
Sbjct: 89  VFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQA 147

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           ++ G+QIHG +V   +G +V +++A   MYA  G ++ AR +F      ++V WN MI G
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDG 206

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           YLK G  +    LF +M +  +    V ++ +     + G + DA +LF  + E+D + W
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA----KGGNLGDARKLFDEMSERDEISW 262

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           ++M+ GY   G+ ++AL +F +M  E+ RP +F +SSV+++C+ + ++  G+ VH     
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D ++ +AL+DMY KCG  D  W VF  M  R + +WN+MI G A +G+  +AL L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + KL +  +KP+  T V VL+AC HA   ++G   F ++   +G+ P L+HY CM++LLG
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS    +A DLI S+P KPN+ +W  LL  C + G+    E   + L ELEP N+G Y++
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVL 502

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  GR++DV+ IR  MK++ +K     S ++++  VH+F   D +HP+ + IY +
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  + ++LQ AG SP+T  VL D  EEEK  ++ YHSEKLA+A+ LI    G   I I+K
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPG-KRIHIVK 621

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH   K  S I  R II+RD  R+HHF  G CSCKD W
Sbjct: 622 NLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 173/332 (52%), Gaps = 9/332 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K G L  A+ LF +MP+++I SWN +++  A+ G++ D R LFD+M  RD +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+++ + G+ + G  +EAL++F +MQ++   P  +   S L AC+ +  + +G+ +H  +
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
              ++  +  +  AL DMYAK G +D    +F+ M  R + +WN MI G   +G+ +  +
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVG 297
           +LF ++Q   + P+ +T+  +L AC   G +D   R+F  ++E   V      +  M+  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             ++G   +A  L N M    ++P+     +++ +C    +    + V GK ++     +
Sbjct: 441 LGRSGLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERV-GKILLELEPQN 496

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
                 L ++Y K G  DD   +  +M  R +
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI 528



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 113/268 (42%), Gaps = 47/268 (17%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + ++  C+ +  ++  + + +++  N  + +   L   LL  YAK G+L    ++F++M 
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV-LGTALLDMYAKCGRLDMGWEVFEEMK 356

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            R+I +WNA++                                G A  G + +AL++FS+
Sbjct: 357 EREIFTWNAMIG-------------------------------GLAIHGRAEDALELFSK 385

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVFVRNALTDMYAKGG 205
           +Q+ R +P   T V  L ACA    + +G +I   +     +   +     + D+  + G
Sbjct: 386 LQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445

Query: 206 EIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDE----V 258
              +A  L + M  + N   W  ++     +G      DL + +   LL L P      V
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGN----FDLAERVGKILLELEPQNSGRYV 501

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEK 286
            +SNI     + GR DD  ++  ++K +
Sbjct: 502 LLSNIYA---KVGRFDDVSKIRKLMKNR 526



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 112/259 (43%), Gaps = 21/259 (8%)

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT--DDAWTVFNMMPTRNVVSWN 393
           + SL +   +H   +  G   D  VS AL+  Y     +  D A  VF+ +P  NV  WN
Sbjct: 43  ITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
            +I G  +N +  +A+  Y +++ +  +P+ FT+ ++  AC  A   + G+     +   
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHV-VK 160

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI   +   +  I +      ++ A  +  S   + + + W+T++      G +K G +
Sbjct: 161 HGIGSDVHIKSAGIQMYASFGRLEDARKMFYS--GESDVVCWNTMID-----GYLKCGVL 213

Query: 514 -AARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
            AA+ LF   P+ N G + ++ N  A  G   D   +   M  ++       SW    + 
Sbjct: 214 EAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERD-----EISW---SSM 265

Query: 572 VHKFVSEDRTHPETEIIYE 590
           V  ++S  R     EI  +
Sbjct: 266 VDGYISAGRYKEALEIFQQ 284


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/608 (38%), Positives = 360/608 (59%), Gaps = 36/608 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D      L+  +A  G + + R +FDKM  RD V+++  I G+   G   +AL +F  M+
Sbjct: 156 DPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMK 215

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               EP +    + L+AC +  +L  GK IH  I+  N+  +  +++AL  MYA  G +D
Sbjct: 216 NYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMD 275

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LF++M  +NLV+   M++GY K GQ                               
Sbjct: 276 LALNLFEKMTPKNLVASTAMVTGYSKLGQ------------------------------- 304

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
               I++A  +F+ + +KD VCW+ MI GY ++   ++AL LFNEM S  ++PD+ ++ S
Sbjct: 305 ----IENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLS 360

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+++CA L +L   + +H      G    L +++ALI+MY KCG  + A  +F+ MP +N
Sbjct: 361 VITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKN 420

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           V+SW  MI+ +A +G    AL  + ++  EN++P+  TFV VL AC HA L E G+  F 
Sbjct: 421 VISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFY 480

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S+   H ITP   HY CM++L GR++ + +A++L++++P  PN +IW +L++ C + G+I
Sbjct: 481 SMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEI 540

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + GE AA+ L EL+P + G ++ LSN+YA   RWEDV  +R  MK K + K    S  E+
Sbjct: 541 ELGEFAAKRLLELDPDHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFEL 600

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
           +N++H+F+  DR+H   + IYE+L +++ KL+  G+SPNT  +L D +EEEK + + +HS
Sbjct: 601 NNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHS 660

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           EKLAL Y L++   G + IRI+KN+RVC DCH F+K AS +  R I++RD  RFHH+  G
Sbjct: 661 EKLALCYGLMRDGTG-SCIRIIKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDG 719

Query: 689 NCSCKDNW 696
            CSCKD W
Sbjct: 720 VCSCKDYW 727



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 173/334 (51%), Gaps = 9/334 (2%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L + L+  YA  G +  A +LF+KM  +++++  A+++ +++ G +++ R++F++M  +D
Sbjct: 260 LQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKD 319

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V ++  I+G+A     +EAL +F+ MQ    +P   T +S + ACA L  L + K IH 
Sbjct: 320 LVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHL 379

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +     GG + + NAL +MYAK G +++AR +FD+M  +N++SW  MIS +  +G    
Sbjct: 380 FVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGS 439

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMI 295
            +  F +M+   + P+ +T   +L AC   G +++  ++F+ +  + N+      +  M+
Sbjct: 440 ALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMV 499

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             + +     +AL L   M    + P+     S++++C     +  G+    + + L  D
Sbjct: 500 DLFGRANLLREALELVEAM---PLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPD 556

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            D      L ++Y K    +D   V  +M  + +
Sbjct: 557 HD-GAHVFLSNIYAKARRWEDVGQVRKLMKHKGI 589



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 173/364 (47%), Gaps = 44/364 (12%)

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN-GQPKKCIDLFQEMQL---LGLNPDE 257
           ++  E +K   +++RM  + L          LK   + K  ++  +   L   LG + D 
Sbjct: 98  SRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDP 157

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
              + ++      GRI +A  +F  +  +D V W+ MI GY Q+G   DAL+LF EM + 
Sbjct: 158 FVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNY 217

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD-- 375
           +V PD+  +S+V+S+C +  +L +G+++H   +   +  D  + SAL+ MY  CG  D  
Sbjct: 218 NVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLA 277

Query: 376 -----------------------------DAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                                        +A +VFN M  +++V W++MI+GYA++    
Sbjct: 278 LNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQ 337

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ--NHFDSISAVHGITPSLDHYA 464
           EAL L++++    +KPD  T +SV++AC H    ++ +  + F   +   G  P  +   
Sbjct: 338 EALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINN--- 394

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            +I +  +   +++A  +   +P K N + W+ ++S  AM GD      A R   ++E  
Sbjct: 395 ALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAFAMHGD---AGSALRFFHQMEDE 450

Query: 525 NAGP 528
           N  P
Sbjct: 451 NIEP 454



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 127/241 (52%), Gaps = 5/241 (2%)

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
           V  ++ +C  +  +D A  +F++I + +       +   +++ + E  L+++  M ++ +
Sbjct: 59  VKLVISSCALSSSLDYALSVFNLIPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGL 118

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
             D+FS   ++ + +++ SL  G  +HG A  LG D D  V + L+ MY  CG   +A  
Sbjct: 119 AVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARL 178

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+ M  R+VV+W+ MI+GY Q+G   +AL L++++   N++PD     +VLSAC  A  
Sbjct: 179 MFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGN 238

Query: 440 FERGQNHFDSISAVHGIT-PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
              G+   D I   + +  P L   + ++ +      +D A++L + +   P +L+ ST 
Sbjct: 239 LSYGKMIHDFIMENNIVVDPHLQ--SALVTMYASCGSMDLALNLFEKM--TPKNLVASTA 294

Query: 499 L 499
           +
Sbjct: 295 M 295


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 245/652 (37%), Positives = 363/652 (55%), Gaps = 46/652 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R+    N L+ A+++ GS+   +  F ++ + ++ S+N  +A +A  G  R A  +F  M
Sbjct: 65  RNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGHPRGAATLFHWM 124

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                 P   T  +AL AC    +L  G++++  I    L  +  V ++L  MY +  EI
Sbjct: 125 CSQGVRPNAVTLSTALLACTAARNLALGRKLNELIASEALEIDSHVESSLITMYGRCREI 184

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A   FDR   +++V W  MIS Y  N +  + ++L + M L G+     T  ++L AC
Sbjct: 185 EEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEGIKLGLPTYVSLLDAC 244

Query: 268 FQT------------------------------------GRIDDAGRLFHVIKEKDNVCW 291
             T                                    GR+DDA R+   +  + +V W
Sbjct: 245 ASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSW 304

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA-V 350
           T MI  Y QNG   +A+ LF  M  E   P   ++ SVV SCA L +L  G+ +H +   
Sbjct: 305 TAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRS 364

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEA 408
                  L++ +A+I MY KCG  + A  VF  +P  TR+VV+W +MI  YAQNG   EA
Sbjct: 365 SPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEA 424

Query: 409 LALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           + L+ ++L +   +P+  TF+SVL AC H    E+   HF S+    G+ P+ DHY C++
Sbjct: 425 IELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLV 484

Query: 468 NLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           +LLGR+  + +A  L+  L HK    + + W   LS C M GD++  + AA+ + ELEP 
Sbjct: 485 DLLGRAGRLGEAEKLL--LRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPE 542

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           N    ++LSN+YAA GR  DVA IR+ MKS  VKKFA  SWIEI+N+VH+F+  D +HP 
Sbjct: 543 NVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPR 602

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
              IY EL +L ++++EAG+ P+TK+VL D  EE+KV+ + YHSE+LA+A  +I  P G 
Sbjct: 603 KLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERLAMALGIISTPPGT 662

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T +R++KN+RVC DCH   KF S I+GR II+RD++RFHHF  G CSC D W
Sbjct: 663 T-LRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 713



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 45/258 (17%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +     +D +  + + L+D Y K G    A   F  +   N  SWN ++  YAQNG 
Sbjct: 54  LHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAHSWNILMAAYAQNGH 113

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
              A  L+  +  + ++P++ T  + L AC  A     G+   + + A   +       +
Sbjct: 114 PRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRK-LNELIASEALEIDSHVES 172

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS---------------------------- 496
            +I + GR  ++++A       P K + + W+                            
Sbjct: 173 SLITMYGRCREIEEAERAFDRSPEK-DVVCWTAMISAYAHNWRTSRALELVRRMDLEGIK 231

Query: 497 -------TLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
                  +LL  CA   D+++G       AA  L     + AG    L N+Y  CGR +D
Sbjct: 232 LGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGT---LVNLYGKCGRVDD 288

Query: 545 VASIRSSMKSKNVKKFAA 562
              +  +M  +    + A
Sbjct: 289 ARRVLDAMPVRTSVSWTA 306



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 72/153 (47%), Gaps = 7/153 (4%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G   ++     +V  C  +  + L KR+ + +  +     +  L N ++  Y K G L  
Sbjct: 331 GAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLEL 390

Query: 78  ARDLFDKMPL--RDIISWNALLSAHARSGSVQDLRALFDKMPI-----RDSVSYNTAIAG 130
           AR++F+ +PL  R +++W A++ A+A++G  ++   LF +M I      + V++ + +  
Sbjct: 391 AREVFECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCA 450

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
            ++ G   +A + F  M  D   P    H   L
Sbjct: 451 CSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCL 483


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/655 (36%), Positives = 359/655 (54%), Gaps = 70/655 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           +LF  +   + V +N  I G ++      AL+ +  M     EP +YT  S   +C ++ 
Sbjct: 83  SLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIR 142

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI----------------------- 207
               GKQ+H  ++   L  N FV  +L +MYA+ GE+                       
Sbjct: 143 GAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALIT 202

Query: 208 --------DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                   D+AR LFD +  R++VSWN MISGY ++G+ ++ +  F+EM+   + P+  T
Sbjct: 203 GYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVST 262

Query: 260 VSNILGACFQTGR------------------------------------IDDAGRLFHVI 283
           + ++L AC Q+G                                     +++A  LF  I
Sbjct: 263 MLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKI 322

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           ++K+ V W  MI GYT     ++AL LF  M+  ++ P+  +  S++ +CA L +L  G+
Sbjct: 323 QDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGK 382

Query: 344 VVHGKA--VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
            VH      +  + + + + ++LIDMY KCG    A  +F+ M T+++ +WN+MI+G+A 
Sbjct: 383 WVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAM 442

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G    AL L+ ++  E   PD  TFV VL+AC HA L   G+ +F S+   + ++P L 
Sbjct: 443 HGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLP 502

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           HY CMI+L GR+   D+A  L+K++  KP+  IW +LL  C +   I+  E  A+HLFEL
Sbjct: 503 HYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFEL 562

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           EP N   Y++LSN+YA  GRWEDVA IR+ +    +KK    S IE+D+ VH+F+  D+ 
Sbjct: 563 EPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKV 622

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKP 641
           HP++  IY+ L ++  +L++AGF P+T  VL+D  EE K   + +HSEKLA+A+ LI   
Sbjct: 623 HPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTK 682

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G T IRIMKN+RVCG+CH   K  S I  R II RD NRFHHF  G+CSCKD W
Sbjct: 683 PGTT-IRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 208/425 (48%), Gaps = 41/425 (9%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G    E  +  +   CT++      K++ +H+ L     +  F+H  L++ YA++G
Sbjct: 119 MISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHV-LKLGLEHNAFVHTSLINMYAQNG 177

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           +L  AR +FDK  +RD +S+ AL++ +A  G + + R LFD++P+RD VS+N  I+G+A 
Sbjct: 178 ELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQ 237

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL-LDLRRGKQIHGKIVVGNLGGNVF 192
            G   EA+  F  M++ +  P   T +S L+ACAQ    L+ G  +   I    LG N+ 
Sbjct: 238 SGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIR 297

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           + N L DMY K G++++A  LF+++ ++N+VSWN+MI GY      K+ + LF+ M    
Sbjct: 298 LVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSN 357

Query: 253 LNPDEVTVSNILGACFQTGRID-------------------------------------D 275
           ++P++VT  +IL AC   G +D                                      
Sbjct: 358 IDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAV 417

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F  +  K    W  MI G+  +G  + AL LF+ M SE   PD  +   V+++C  
Sbjct: 418 AKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKH 477

Query: 336 LASLYHGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVVSWN 393
              L  G+      +    V   L     +ID++ + G+ D+A T V NM    +   W 
Sbjct: 478 AGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWC 537

Query: 394 SMING 398
           S++  
Sbjct: 538 SLLGA 542



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 138/281 (49%), Gaps = 34/281 (12%)

Query: 252 GLNPDEVTVSNILGACFQT--GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GL+     +S ++  C  +  G +  A  LF  I+  ++V W  MI G + +     AL 
Sbjct: 55  GLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALE 114

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            +  M+S    P++++  S+  SC K+   + G+ VH   + LG++ +  V ++LI+MY 
Sbjct: 115 YYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYA 174

Query: 370 KCG-------------------------------VTDDAWTVFNMMPTRNVVSWNSMING 398
           + G                                 D+A  +F+ +P R+VVSWN+MI+G
Sbjct: 175 QNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISG 234

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           YAQ+G+  EA+A ++++ +  + P+  T +SVLSAC  +    +  N   S     G+  
Sbjct: 235 YAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGS 294

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           ++     +I++  +  D+++A +L + +  K N + W+ ++
Sbjct: 295 NIRLVNGLIDMYVKCGDLEEASNLFEKIQDK-NVVSWNVMI 334


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/643 (37%), Positives = 366/643 (56%), Gaps = 43/643 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ +A+ G+++    +F  M   D +S+NT I+     G   EA+  +S M++    
Sbjct: 419  NGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCIS 478

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P+++  +S+L++CA L  L  G+Q+H   V   L  +  V N L  MY + G +     +
Sbjct: 479  PSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKV 538

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQP-KKCIDLFQEMQLLGLNPDEVTVSNILGA-----C 267
            F+ M   + VSWN M+     +  P  + + +F  M   GL P++VT  N+L A      
Sbjct: 539  FNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSV 598

Query: 268  FQTGRIDDAGRLFHVIKE-------------------------------KDNVCWTTMIV 296
             + G+   A  + H + E                               +D + W +MI 
Sbjct: 599  LELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMIS 658

Query: 297  GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            GY  NG  ++A+     M+      D  + S ++++CA +A+L  G  +H   +   ++ 
Sbjct: 659  GYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLES 718

Query: 357  DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            D++V SAL+DMY KCG  D A  +FN M  RN  SWNSMI+GYA++G   +A+ +++++L
Sbjct: 719  DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEML 778

Query: 417  QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
            +    PD  TFVSVLSAC HA L ERG  +F+ +   HGI P ++HY+C+I+LLGR+  +
Sbjct: 779  RSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKI 837

Query: 477  DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLS 533
            DK  + I+ +P +PN+LIW T+L  C    D   I  G  A+R L E+EP N   Y++ S
Sbjct: 838  DKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLAS 897

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            N +AA G WED A  R++M+    KK A  SW+ +++ VH F++ DR+HP T+ IYE+L+
Sbjct: 898  NFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLN 957

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             LI+ ++ AG+ P T+  L+D +EE K + + YHSEKLA+A+ L +   G  PIRIMKN+
Sbjct: 958  FLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSG--PIRIMKNL 1015

Query: 654  RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            RVCGDCH+  ++ S +I R IILRDS RFHHF  G CSC D W
Sbjct: 1016 RVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/414 (28%), Positives = 190/414 (45%), Gaps = 52/414 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L++++A+   +     +FD+MP R++VS+   ++G+   G + EA +VF  M 
Sbjct: 95  DLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAML 154

Query: 149 KD---RFEPTDYTHVSALNACAQLLDLRRG--KQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           ++      PT +T  + L AC      R G   Q+HG +       N  V NAL  MY  
Sbjct: 155 REVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGS 214

Query: 204 G--GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL----LGLNPDE 257
              G    A+ +FD    R+L++WN ++S Y K G       LF++MQ     + L P E
Sbjct: 215 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTE 274

Query: 258 VTV------------------------------------SNILGACFQTGRIDDAGRLFH 281
            T                                     S ++ A  + G  D+A  +F 
Sbjct: 275 HTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFL 334

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILF-NEMLSEDVRPDKFSI--SSVVSSCAKLAS 338
            +K+K+ V    +IVG  +    E+A+ +F     + DV  D + +  S++         
Sbjct: 335 SLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEG 394

Query: 339 LYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           L  G+VVHG  +  G+ D  + VS+ L++MY KCG  + A  +F +M   + +SWN++I+
Sbjct: 395 LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIIS 454

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSI 450
              QNG   EA+  Y  + Q  + P +F  +S LS+C    L   GQ  H D++
Sbjct: 455 ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAV 508



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 109/200 (54%), Gaps = 1/200 (0%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGFANKGFSREALQVFS 145
           + D +  NAL+S +A+SG +     LF  M   RD++S+N+ I+G+   G  +EA+    
Sbjct: 615 MEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVW 674

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M          T    LNACA +  L RG ++H   +  +L  +V V +AL DMY+K G
Sbjct: 675 LMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCG 734

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A  LF+ M  RN  SWN MISGY ++G  +K I++F+EM     +PD VT  ++L 
Sbjct: 735 RVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLS 794

Query: 266 ACFQTGRIDDAGRLFHVIKE 285
           AC   G ++     F ++ +
Sbjct: 795 ACSHAGLVERGLEYFEMMPD 814



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 93/431 (21%), Positives = 176/431 (40%), Gaps = 70/431 (16%)

Query: 172 LRRG------KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           LRRG      + +H +++   L  ++F+ N L + YAKG  +  A  +FD M  RN VSW
Sbjct: 71  LRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSW 130

Query: 226 NLMISGYLKNGQPKKCIDLFQEM---QLLGLNPDEVTVSNILGACFQTGRIDDAG----- 277
             ++SGY+ +G  ++   +F+ M      G  P   T   +L AC Q G  D  G     
Sbjct: 131 TCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRAC-QDGGPDRLGFAVQV 189

Query: 278 -----------------------------------RLFHVIKEKDNVCWTTMIVGYTQNG 302
                                              R+F     +D + W  ++  Y + G
Sbjct: 190 HGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKG 249

Query: 303 KEEDALILFNEMLSED----VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----GV 354
                  LF +M   D    +RP + +  S++++ +  +       V  + +V     G 
Sbjct: 250 DVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGS---SAVLDQVLVWVLKSGC 306

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             DL V SAL+  + + G+TD+A  +F  +  +N V+ N +I G  +     EA+ ++  
Sbjct: 307 SSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG 366

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC-----MINL 469
             +  +  ++ T+V +LSA     + E G      +   H +   L          ++N+
Sbjct: 367 -TRNTVDVNADTYVVLLSALAEYSISEEGL-RIGRVVHGHMLRTGLTDLKIAVSNGLVNM 424

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
             +   ++ A  + + L    + + W+T++S     G+ +   M    L     I+   +
Sbjct: 425 YAKCGAIESASKIFQ-LMEATDRISWNTIISALDQNGNCEEAVM-HYSLMRQSCISPSNF 482

Query: 530 IMLSNMYAACG 540
            ++S++ +  G
Sbjct: 483 ALISSLSSCAG 493



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 153/377 (40%), Gaps = 58/377 (15%)

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
           + G      +L  E+   GLN D    ++++ +  +  R+  A ++F  + E++ V WT 
Sbjct: 73  RGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTC 132

Query: 294 MIVGYTQNGKEEDALILFNEMLSE---DVRPDKFSISSVVSSCAKLAS--LYHGQVVHGK 348
           ++ GY  +G  E+A  +F  ML E     RP  F+  +++ +C       L     VHG 
Sbjct: 133 LVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGL 192

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDD--AWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                   +  V +ALI MY  C V     A  VF+  P R++++WN++++ YA+ G   
Sbjct: 193 VSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVA 252

Query: 407 EALALYDKLLQEN----LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
               L+  + + +    L+P   TF S+++A   +       +         G +  L  
Sbjct: 253 STFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYV 312

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKP----NSLI------------------------ 494
            + +++   R    D+A D+  SL  K     N LI                        
Sbjct: 313 GSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVD 372

Query: 495 -----WSTLLSVCAMK---------GDIKHGEMAARHLFELE-PINAGPYIMLSNMYAAC 539
                +  LLS  A           G + HG M    L +L+  ++ G    L NMYA C
Sbjct: 373 VNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNG----LVNMYAKC 428

Query: 540 GRWEDVASIRSSMKSKN 556
           G  E  + I   M++ +
Sbjct: 429 GAIESASKIFQLMEATD 445



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 7/195 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G V     LF+ M  R+  S+N+ I+G+A  G  R+A+++F  M 
Sbjct: 719 DVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEML 778

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + R  P   T VS L+AC+    + RG +    +    +   +   + + D+  + G+ID
Sbjct: 779 RSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGRAGKID 838

Query: 209 KARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDEVTVSNILG 265
           K +    RM    N + W  ++    +  +    IDL +E    LL + P    V+ +L 
Sbjct: 839 KIKEYIQRMPIEPNALIWRTVLVA-CRQSKDGSNIDLGREASRVLLEIEPQN-PVNYVLA 896

Query: 266 ACFQ--TGRIDDAGR 278
           + F   TG  +D  +
Sbjct: 897 SNFHAATGMWEDTAK 911


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 365/640 (57%), Gaps = 8/640 (1%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRD 120
           L   YA++  +  A  + D M    ++ WNA+++  AR G V D   L  +M    P  +
Sbjct: 179 LAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPN 238

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++NT ++G +  G  REAL V + M K    P   T  S L + A    LR G +IH 
Sbjct: 239 VATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHC 298

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +   L  +V+   AL DMYAK G +D A+ +FD + +RNL +WN +++GY   G+   
Sbjct: 299 FFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDI 358

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIV 296
            ++L + M+   L+PD  T + ++      G+   A  L   IK      + V WT++I 
Sbjct: 359 ALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLIS 418

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G   NG+ ED+    +EM  + V+P   ++S ++ +CA LA    G+ +H  A+    D 
Sbjct: 419 GSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDC 478

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D++VS+ALIDMY K G    A  +F  +  +N+V  N+M+ G A +GQ  EA+ L+  + 
Sbjct: 479 DMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMW 538

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              LKPDS TF ++L+AC    L   G  +FD +   +G+ P+ ++YACM++LL R   +
Sbjct: 539 NSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLARCGYL 598

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           D+A+D I+  P  P +  W  LL+ C++ G++   E+AAR+LF LEP N+  Y+++ N+Y
Sbjct: 599 DEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYLLMMNLY 658

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
                +++  S++ +MK++ V     +SWI+I+  +H F  + + HPET  IYEEL +L+
Sbjct: 659 EYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLV 718

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            ++++AG+ P+T  + ++ QEEEK K +  H+EKLA+ Y LI+      P+R+MKN R+C
Sbjct: 719 FQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMC 778

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   K  S +  R IILRD+ RFHHFV G CSC D W
Sbjct: 779 NDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 191/446 (42%), Gaps = 60/446 (13%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D+V +N  +A  A      EA+ VF  MQ                  A+ +  RRG+ +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQ------------------ARGVPRRRGRAV 160

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +  V   L  MYA+  ++  A  + D M   ++V WN +++   + G  
Sbjct: 161 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLV 220

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
              ++L   M   G  P+  T + +L  C                               
Sbjct: 221 DDALELAARMSRSGPEPNVATWNTVLSGC------------------------------- 249

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +++G++ +AL +   ML + +RPD  ++SS++ S A    L HG  +H   +   ++ D+
Sbjct: 250 SRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDV 309

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              +AL+DMY KCG  D A  VF+ +  RN+ +WNS++ GYA  G+   AL L + + + 
Sbjct: 310 YTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKN 369

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L PD  T+  +++         +       I A  G+TP++  +  +I+    + + + 
Sbjct: 370 RLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAA-GVTPNVVSWTSLISGSCHNGEYED 428

Query: 479 AVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIM 531
           +      +     +P+ +  S LL  CA     K G+     A R  ++ + + +   I 
Sbjct: 429 SFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALI- 487

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNV 557
             +MY+  G       I  S++ KN+
Sbjct: 488 --DMYSKGGSLVSAKVIFESIQQKNL 511


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/585 (37%), Positives = 341/585 (58%), Gaps = 7/585 (1%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F  +P  +   +N  I G        +A+  + RM  D   P  +T+ +   AC+    
Sbjct: 89  VFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQA 147

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           ++ G+QIHG +V   +G +V +++A   MYA  G ++ AR +F      ++V WN MI G
Sbjct: 148 VQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMF-YSGESDVVCWNTMIDG 206

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           YLK G  +    LF +M +  +    V ++ +     + G + DA +LF  + E+D + W
Sbjct: 207 YLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLA----KGGNLGDARKLFDEMSERDEISW 262

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           ++M+ GY   G+ ++AL +F +M  E+ RP +F +SSV+++C+ + ++  G+ VH     
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D ++ +AL+DMY KCG  D  W VF  M  R + +WN+MI G A +G+  +AL L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + KL +  +KP+  T V VL+AC HA   ++G   F ++   +G+ P L+HY CM++LLG
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS    +A DLI S+P KPN+ +W  LL  C + G+    E   + L ELEP N+G Y++
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKILLELEPQNSGRYVL 502

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  GR++DV+ IR  MK + +K     S ++++  VH+F   D +HP+ + IY +
Sbjct: 503 LSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRK 562

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  + ++LQ AG SP+T  VL D  EEEK  ++ YHSEKLA+A+ LI    G   I I+K
Sbjct: 563 LKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLINTLPG-KRIHIVK 621

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH   K  S I  R II+RD  R+HHF  G CSCKD W
Sbjct: 622 NLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 173/332 (52%), Gaps = 9/332 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K G L  A+ LF +MP+++I SWN +++  A+ G++ D R LFD+M  RD +
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+++ + G+ + G  +EAL++F +MQ++   P  +   S L AC+ +  + +G+ +H  +
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
              ++  +  +  AL DMYAK G +D    +F+ M  R + +WN MI G   +G+ +  +
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL 380

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVG 297
           +LF ++Q   + P+ +T+  +L AC   G +D   R+F  ++E   V      +  M+  
Sbjct: 381 ELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDL 440

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             ++G   +A  L N M    ++P+     +++ +C    +    + V GK ++     +
Sbjct: 441 LGRSGLFSEAEDLINSM---PMKPNAAVWGALLGACRIHGNFDLAERV-GKILLELEPQN 496

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
                 L ++Y K G  DD   +  +M  R +
Sbjct: 497 SGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 114/259 (44%), Gaps = 21/259 (8%)

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT--DDAWTVFNMMPTRNVVSWN 393
           + SL +   +HG  +  G   D  VS AL+  Y     +  D A  VF+ +P  NV  WN
Sbjct: 43  ITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWN 102

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
            +I G  +N +  +A+  Y +++ +  +P+ FT+ ++  AC  A   + G+     +   
Sbjct: 103 IVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSVAQAVQEGRQIHGHV-VK 160

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI   +   +  I++      ++ A  +  S   + + + W+T++      G +K G +
Sbjct: 161 HGIGSDVHIKSAGIHMYASFGRLEDARKMFYS--GESDVVCWNTMID-----GYLKCGVL 213

Query: 514 -AARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
            AA+ LF   P+ N G + ++ N  A  G   D   +   M  ++       SW    + 
Sbjct: 214 EAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERD-----EISW---SSM 265

Query: 572 VHKFVSEDRTHPETEIIYE 590
           V  ++S  R     EI  +
Sbjct: 266 VDGYISAGRYKEALEIFQQ 284



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 114/268 (42%), Gaps = 47/268 (17%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + ++  C+ +  ++  + + +++  N  + +   L   LL  YAK G+L    ++F++M 
Sbjct: 298 SSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAV-LGTALLDMYAKCGRLDMGWEVFEEMK 356

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            R+I +WNA++                                G A  G + +AL++FS+
Sbjct: 357 EREIFTWNAMIG-------------------------------GLAIHGRAEDALELFSK 385

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVFVRNALTDMYAKGG 205
           +Q+ R +P   T V  L ACA    + +G +I   +     +   +     + D+  + G
Sbjct: 386 LQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSG 445

Query: 206 EIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDE----V 258
              +A  L + M  + N   W  ++     +G      DL + +   LL L P      V
Sbjct: 446 LFSEAEDLINSMPMKPNAAVWGALLGACRIHGN----FDLAERVGKILLELEPQNSGRYV 501

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEK 286
            +SNI     + GR DD  ++  ++K++
Sbjct: 502 LLSNIYA---KVGRFDDVSKIRKLMKDR 526


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 377/681 (55%), Gaps = 42/681 (6%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRA 111
           P        LL   A  G L   R +  ++  R I    ++  AL + +A+     D R 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLL 170
           +FD+MP+RD V++N  +AG+A  G +R A+++  RMQ++  E P   T VS L ACA   
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L   ++ H   +   L   V V  A+ D Y K G+I  AR +FD M  +N VSWN MI 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG------------------- 271
           GY +NG  ++ + LF  M   G++  +V+V   L AC + G                   
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 272 ----------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                           R+D A  +F  +  +  V W  MI+G  QNG  EDA+ LF  M 
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E+V+PD F++ SV+ + A ++     + +HG ++ L +D D+ V +ALIDMY KCG  +
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +FN    R+V++WN+MI+GY  +G    A+ L++++    + P+  TF+SVLSAC 
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           HA L + G+ +F S+   +G+ P ++HY  M++LLGR+  +D+A   I+ +P  P   ++
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
             +L  C +  +++  E +A+ +FEL P     +++L+N+YA    W+DVA +R++M+  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            ++K   +S I++ N++H F S    H + + IY  L+KLI++++  G+ P+T  + HD 
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDV 654

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +++ K + +  HSEKLA+A+ LI+   G T I+I KN+RVC DCH   K  S + GR II
Sbjct: 655 EDDVKAQLLNTHSEKLAIAFGLIRTAPGTT-IQIKKNLRVCNDCHNATKLISLVTGREII 713

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD  RFHHF  G CSC D W
Sbjct: 714 MRDIQRFHHFKDGKCSCGDYW 734



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 204/456 (44%), Gaps = 72/456 (15%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL  F  M      P   T  S L  CA   DL  G+ +H ++    +        AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEV 258
           MYAK      AR +FDRM  R+ V+WN +++GY +NG  +  +++   MQ   G  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 259 TV-----------------------------------SNILGACFQTGRIDDAGRLFHVI 283
           T+                                   + IL A  + G I  A  +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             K++V W  MI GY QNG   +AL LFN M+ E V     S+ + + +C +L  L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            VH   V +G+D ++ V +ALI MY KC   D A  VF+ +  R  VSWN+MI G AQNG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSI-----SAVHGIT 457
              +A+ L+ ++  EN+KPDSFT VSV+ A    +D  +    H  SI       V+ +T
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 458 PSLDHYA------------------------CMINLLGRSSDVDKAVDL---IKSLPHKP 490
             +D YA                         MI+  G       AV+L   +KS+   P
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVP 462

Query: 491 NSLIWSTLLSVCAMKGDIKHGE---MAARHLFELEP 523
           N   + ++LS C+  G +  G     + +  + LEP
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP 498


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/643 (36%), Positives = 357/643 (55%), Gaps = 78/643 (12%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           ++ AI     +   +EALQ+  ++ K    P+   + + + +C +   L++GK++H  I 
Sbjct: 42  FDEAIHILCQQNRLKEALQILHQIDK----PSASVYSTLIQSCIKSRLLQQGKKVHQHIK 97

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG------- 236
           +      +F+ N L +MYAK   +  ++ LFD M  R+L SWN++ISGY K G       
Sbjct: 98  LSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKS 157

Query: 237 ------------------------QPKKCIDLFQEMQL---------------------- 250
                                   +P + ++LF+ M+                       
Sbjct: 158 LFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVP 217

Query: 251 --------------LGLNPDEVT---VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
                          GL+ DEV    +S++ G C   G I++A  +F  + ++D V WT 
Sbjct: 218 CLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKC---GSIEEARHIFDKMVDRDIVTWTA 274

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  Y Q+G+ ++   LF ++L   +RP++F+ S V+++CA   S   G+ VHG    +G
Sbjct: 275 MIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVG 334

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D     +SAL+ MY KCG    A  VF   P  ++ SW S+I GYAQNGQ  EA+  ++
Sbjct: 335 FDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFE 394

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            L++   +PD  TFV VLSAC HA L ++G ++F SI   +G+T + DHYAC+I+LL RS
Sbjct: 395 LLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARS 454

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              D+A ++I  +  KP+  +W++LL  C + G++K  + AA  LFE+EP N   Y+ L+
Sbjct: 455 GQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLA 514

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G W +VA IR +M  + V K    SWI I   VH F+  D +HP+++ I E L 
Sbjct: 515 NIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLG 574

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           KL K+++E GF P+T  VLHD ++E+K +++ YHSEKLA+A+ +I  P G TPI++ KN+
Sbjct: 575 KLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEG-TPIKVFKNL 633

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R C DCH  +KF S I  R II+RDSNRFH F  G+CSC+D W
Sbjct: 634 RTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 146/307 (47%), Gaps = 9/307 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W+AL   + + GS+++ R +FDKM  RD V++   I  +   G  +E   +F+ + 
Sbjct: 237 DEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLL 296

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P ++T    LNACA       GK++HG +         F  +AL  MY+K G + 
Sbjct: 297 RSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMV 356

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F      +L SW  +I+GY +NGQP + I  F+ +   G  PD +T   +L AC 
Sbjct: 357 SAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACA 416

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTT-----MIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +D     FH IKE+  +  T      +I    ++G+ ++A  + ++M    ++PDK
Sbjct: 417 HAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKM---SMKPDK 473

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F  +S++  C    +L   Q    +A+     ++      L ++Y   G+  +   +   
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRA-AEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKT 532

Query: 384 MPTRNVV 390
           M  R VV
Sbjct: 533 MDDRGVV 539


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/636 (36%), Positives = 369/636 (58%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ +++ G V++ +A+F +M  RD VS+NT +AG        EALQ+F   +    +
Sbjct: 240 NSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAK 299

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            +  T+ + +  CA L  L   +Q+H  ++      +  V  A+ D Y+K GE+D A  +
Sbjct: 300 LSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNI 359

Query: 214 FDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
           F  M  ++N+VSW  MI G ++N        LF  M+   + P+E T S +L A      
Sbjct: 360 FLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILL 419

Query: 269 ---------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      + G  ++A  +F +I  KD V W+ M+  Y+Q 
Sbjct: 420 PQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQA 479

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAVVLGVDDDLLV 360
           G  + A  +F +M  + ++P++F+ISS + +CA   A +  G+  H  ++     D + V
Sbjct: 480 GDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICV 539

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            SAL+ MY + G  D A  VF     R++VSWNSMI+GYAQ+G   EAL  + ++    +
Sbjct: 540 GSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGI 599

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           + D  TF++V+  C HA L + GQ +FDS+   H I+P+++HY+CM++L  R+  +D+ +
Sbjct: 600 EMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETM 659

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +LI+ +P    +++W TLL  C +  +++ G++AA+ L  LEP ++  Y++LSN+YAA G
Sbjct: 660 NLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW++   +R  M SK VKK A  SWI+I NKVH F++ D++HP +E IY +L  +  +L+
Sbjct: 720 RWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLK 779

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           + G+ PNT +VLHD  EE+K   +  HSE+LALA+ LI  P   TP++I+KN+RVCGDCH
Sbjct: 780 QEGYCPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPR-TPLQIVKNLRVCGDCH 838

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + MK  S I  R II+RD +RFHHF  G CSC D W
Sbjct: 839 MVMKMVSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 217/450 (48%), Gaps = 43/450 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+  + + G V+D R +F+ MP R+ V++ + + G+       + + +F RM+ +   
Sbjct: 139 TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVW 198

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T  S L+A A    +  G+++H + V       VFV N+L +MY+K G +++A+ +
Sbjct: 199 PNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAV 258

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE-----------------------MQL 250
           F +M  R++VSWN +++G L N    + + LF +                        QL
Sbjct: 259 FRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQL 318

Query: 251 L------------GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-WTTMIVG 297
                        G + D   ++ I+ A  + G +DDA  +F ++    NV  WT MI G
Sbjct: 319 ALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGG 378

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS-SCAKLASLYHGQVVHGKAVVLGVDD 356
             QN     A  LF+ M  ++V+P++F+ S+V++ S   L    H Q++           
Sbjct: 379 CIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIK-----TNYQH 433

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V +AL+  Y K G T++A ++F M+  ++VV+W++M++ Y+Q G    A  ++ K+ 
Sbjct: 434 APSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMS 493

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
            + +KP+ FT  S + AC            F +IS  +    ++   + ++ +  R   +
Sbjct: 494 MQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSI 553

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           D A  + +    + + + W++++S  A  G
Sbjct: 554 DSARIVFERQTDR-DLVSWNSMISGYAQHG 582



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 217/472 (45%), Gaps = 65/472 (13%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD----SVSYNTAIAGFANKGFSR-EA 140
           PL  + S   L    A + +    R   D MP RD    S S   AI  +  +G  R EA
Sbjct: 25  PLSALASAARLEDDCADTCNAPGARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEA 84

Query: 141 LQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALT 198
           L  F  + +  R +    + V  L  C  + D   G+Q+H   V  G     V V  AL 
Sbjct: 85  LDHFVDVHRCGRVQGAAVSRV--LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALV 142

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           DMY K G ++  R +F+ M  RN+V+W  +++GY++       + LF  M+  G+ P+  
Sbjct: 143 DMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPF 202

Query: 259 TVSNILGACFQTGRID-----------------------------------DAGRLFHVI 283
           T +++L A    G +D                                   +A  +F  +
Sbjct: 203 TFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQM 262

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           + +D V W T++ G   N  + +AL LF++  +   +  + + S+V+  CA L  L   +
Sbjct: 263 ETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALAR 322

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQN 402
            +H   +  G   D  V +A++D Y KCG  DDA+ +F +MP ++NVVSW +MI G  QN
Sbjct: 323 QLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQN 382

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSAC-------LHADLFERGQNHFDSISAVHG 455
                A AL+ ++ ++N+KP+ FT+ +VL+A        +HA + +    H  S+     
Sbjct: 383 ADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVG---- 438

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
            T  L  Y+       +  + ++A+ + K + HK + + WS +LS  +  GD
Sbjct: 439 -TALLASYS-------KLGNTEEALSIFKMIDHK-DVVAWSAMLSCYSQAGD 481



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/258 (27%), Positives = 128/258 (49%), Gaps = 2/258 (0%)

Query: 252 GLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           G +  EV V   L   + + G ++D   +F  + +++ V WT+++ GY Q     D + L
Sbjct: 129 GFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMAL 188

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  M +E V P+ F+ +SV+S+ A   ++  G+ VH ++V  G    + V ++LI+MY K
Sbjct: 189 FFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSK 248

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG+ ++A  VF  M TR++VSWN+++ G   N   LEAL L+        K    T+ +V
Sbjct: 249 CGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTV 308

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +  C +       +    S    HG     +    +++   +  ++D A ++   +P   
Sbjct: 309 IKLCANLKQLALAR-QLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQ 367

Query: 491 NSLIWSTLLSVCAMKGDI 508
           N + W+ ++  C    DI
Sbjct: 368 NVVSWTAMIGGCIQNADI 385


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/681 (35%), Positives = 377/681 (55%), Gaps = 42/681 (6%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRA 111
           P        LL   A  G L   R +  ++  R I    ++  AL + +A+     D R 
Sbjct: 56  PPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARR 115

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLL 170
           +FD+MP+RD V++N  +AG+A  G +R A+++  RMQ++  E P   T VS L ACA   
Sbjct: 116 VFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANAR 175

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L   ++ H   +   L   V V  A+ D Y K G+I  AR +FD M  +N VSWN MI 
Sbjct: 176 ALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMID 235

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG------------------- 271
           GY +NG  ++ + LF  M   G++  +V+V   L AC + G                   
Sbjct: 236 GYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDS 295

Query: 272 ----------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                           R+D A  +F  +  +  V W  MI+G  QNG  EDA+ LF  M 
Sbjct: 296 NVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQ 355

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E+V+PD F++ SV+ + A ++     + +HG ++ L +D D+ V +ALIDMY KCG  +
Sbjct: 356 LENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVN 415

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +FN    R+V++WN+MI+GY  +G    A+ L++++    + P+  TF+SVLSAC 
Sbjct: 416 IARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACS 475

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           HA L + G+ +F S+   +G+ P ++HY  M++LLGR+  +D+A   I+ +P  P   ++
Sbjct: 476 HAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVY 535

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
             +L  C +  +++  E +A+ +FEL P     +++L+N+YA    W+DVA +R++M+  
Sbjct: 536 GAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            ++K   +S I++ N++H F S    H + + IY  L+KLI++++  G+ P+T  + HD 
Sbjct: 596 GLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSI-HDV 654

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +++ K + +  HSEKLA+A+ LI+   G T I+I KN+RVC DCH   K  S + GR II
Sbjct: 655 EDDVKAQLLNTHSEKLAIAFGLIRTAPGTT-IQIKKNLRVCNDCHNATKLISLVTGREII 713

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD  RFHHF  G CSC D W
Sbjct: 714 MRDIQRFHHFKDGKCSCGDYW 734



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 204/456 (44%), Gaps = 72/456 (15%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL  F  M      P   T  S L  CA   DL  G+ +H ++    +        AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEV 258
           MYAK      AR +FDRM  R+ V+WN +++GY +NG  +  +++   MQ   G  PD +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 259 TV-----------------------------------SNILGACFQTGRIDDAGRLFHVI 283
           T+                                   + IL A  + G I  A  +F  +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             K++V W  MI GY QNG   +AL LFN M+ E V     S+ + + +C +L  L  G 
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            VH   V +G+D ++ V +ALI MY KC   D A  VF+ +  R  VSWN+MI G AQNG
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSI-----SAVHGIT 457
              +A+ L+ ++  EN+KPDSFT VSV+ A    +D  +    H  SI       V+ +T
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLT 402

Query: 458 PSLDHYA------------------------CMINLLGRSSDVDKAVDL---IKSLPHKP 490
             +D YA                         MI+  G       AV+L   +KS+   P
Sbjct: 403 ALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVP 462

Query: 491 NSLIWSTLLSVCAMKGDIKHGE---MAARHLFELEP 523
           N   + ++LS C+  G +  G     + +  + LEP
Sbjct: 463 NETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEP 498


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/639 (34%), Positives = 360/639 (56%), Gaps = 38/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL ++ ++G +   R LF +M   DSVS+N  I G+AN G + EA+++F  MQ   F+
Sbjct: 179 NTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFK 238

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+D+T  + ++A   L D   G+QIHG +V  +   NVFV NA  D Y+K   +++ R L
Sbjct: 239 PSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKL 298

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-------------------- 253
           F+ M   + VS+N++I+ Y   G+ K+ IDLFQE+Q                        
Sbjct: 299 FNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDL 358

Query: 254 ---------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                          +PD    ++++    + G+ ++A R+F  +  +  V WT MI   
Sbjct: 359 QMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISAN 418

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  E+ L LF EM   +V  D+ + + V+ + A LAS+  G+ +H   +  G   ++
Sbjct: 419 VQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF-MNV 477

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
               AL+DMY  C    DA   F  M  RNVV+WN++++ YAQNG     L  +++++  
Sbjct: 478 YSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMS 537

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +PDS +F+ +L+AC H  L E G  +F+ +S V+ + P  +HY  M++ L RS   D+
Sbjct: 538 GYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDE 597

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA 537
           A  L+  +P +P+ ++W+++L+ C +  +      AA  LF ++ + +A PY+ +SN++A
Sbjct: 598 AEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFA 657

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+W+ V  ++ +M+ + V+K  AYSW+EI +KVH F + D  HP+   I  ++  L +
Sbjct: 658 EAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIEMLAE 717

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++++ G+ P+      +  +E K+ S+ YHSE+LA+A+ LI  P G +PI +MKN+R C 
Sbjct: 718 QMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEG-SPILVMKNLRACT 776

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S I+GR I +RDSNRFHHF  G+CSC D W
Sbjct: 777 DCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 231/496 (46%), Gaps = 49/496 (9%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           ++P T+   N ++   ++ G+L  AR L D+MP R+  S + ++S + +SG++   R +F
Sbjct: 39  FDPITSRF-NFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIF 97

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D    R  V++ T I  ++      +A ++F+ M +   +P   T+++ L  C  L   +
Sbjct: 98  DDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAK 157

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
              Q H +IV      N  V N L D Y K G +D AR LF  M   + VS+N+MI+GY 
Sbjct: 158 ELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYA 217

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------- 267
            NG  ++ I+LF EMQ LG  P + T + ++ A                           
Sbjct: 218 NNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVF 277

Query: 268 -------FQTGR--IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                  F +    +++  +LF+ + E D V +  +I  Y   GK ++++ LF E+    
Sbjct: 278 VGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTT 337

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
                F   +++S  A    L  G+ +H + VV   D D  VS++L+DMY KCG  ++A 
Sbjct: 338 FDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD 397

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-A 437
            +F  + +R+ V W +MI+   Q G     L L+ ++ + N+  D  TF  VL A  + A
Sbjct: 398 RIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLA 457

Query: 438 DLFERGQNHFDSISA----VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
            +    Q H   I +    V+     LD YA         + +  A+   + +  + N +
Sbjct: 458 SILLGKQLHSCVIRSGFMNVYSGCALLDMYA-------NCASIKDAIKTFEEMSER-NVV 509

Query: 494 IWSTLLSVCAMKGDIK 509
            W+ LLS  A  GD K
Sbjct: 510 TWNALLSAYAQNGDGK 525



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 200/438 (45%), Gaps = 76/438 (17%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +R++   NA L  +++   V ++R LF++MP  D VSYN  I  +A  G  +E++ +F  
Sbjct: 273 IRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQE 332

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +Q   F+  ++   + L+  A  LDL+ G+Q+H ++VV     +  V N+L DMYAK G+
Sbjct: 333 LQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGK 392

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            ++A  +F R+++R+ V W  MIS  ++ G  +  + LF EM+   ++ D+ T + +L A
Sbjct: 393 FEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKA 452

Query: 267 ----------------CFQTG------------------RIDDAGRLFHVIKEKDNVCWT 292
                             ++G                   I DA + F  + E++ V W 
Sbjct: 453 SANLASILLGKQLHSCVIRSGFMNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWN 512

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            ++  Y QNG  +  L  F EM+    +PD  S   ++++C+           H + V  
Sbjct: 513 ALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACS-----------HCRLVEE 561

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G+                    +D   V+N+ P R    + +M++   ++G+  EA    
Sbjct: 562 GLK-----------------YFNDMSGVYNLAPKRE--HYTAMVDALCRSGRFDEA---- 598

Query: 413 DKLL-QENLKPDSFTFVSVLSAC-LHAD--LFERGQNHFDSISAVHGITPSLDHYACMIN 468
           +KL+ Q   +PD   + SVL++C +H +  L  +      ++  +    P    Y  M N
Sbjct: 599 EKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAP----YVTMSN 654

Query: 469 LLGRSSDVDKAVDLIKSL 486
           +   +   D  V + K++
Sbjct: 655 IFAEAGQWDSVVKVKKAM 672



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 157/357 (43%), Gaps = 41/357 (11%)

Query: 38  DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
           D+++ ++L + + ++  +P+   + N L+  YAK GK   A  +F ++  R  + W A++
Sbjct: 357 DLQMGRQLHAQVVVSMADPDFR-VSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMI 415

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
           SA+ +                               +G     L++F  M++        
Sbjct: 416 SANVQ-------------------------------RGLHENGLKLFYEMRRANVSADQA 444

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T    L A A L  +  GKQ+H  ++      NV+   AL DMYA    I  A   F+ M
Sbjct: 445 TFACVLKASANLASILLGKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEM 503

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
           + RN+V+WN ++S Y +NG  K  +  F+EM + G  PD V+   IL AC     +++  
Sbjct: 504 SERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGL 563

Query: 278 RLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + F+ +    N+      +T M+    ++G+ ++A  L  +M  E   PD+   +SV++S
Sbjct: 564 KYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKLMGQMPFE---PDEIVWTSVLNS 620

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           C    +    +   G+   + V  D      + +++ + G  D    V   M  R V
Sbjct: 621 CRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGV 677


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 354/628 (56%), Gaps = 42/628 (6%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALN 164
           V   R +FD +P  D+V +NT +AG +      EA++ F+RM  D    P   T  S L 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLP 220

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           A A++ D+  G+ +H       L  +  V   L  +Y+K G+++ AR LFD M   +LV+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GACF 268
           +N +ISGY  NG     ++LF E+  LGL P+  T+  ++                G   
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVL 340

Query: 269 QTG----------------RIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           ++G                R++D   A + F  + EK    W  MI GY QNG  E A+ 
Sbjct: 341 KSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVA 400

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF +M+  +VRP+  +ISS +S+CA+L +L  G+ +H       ++ ++ V +ALIDMY 
Sbjct: 401 LFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYA 460

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KCG   +A  +FN M  +NVVSWN+MI GY  +GQ  EAL LY  +L  +L P S TF+S
Sbjct: 461 KCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLS 520

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VL AC H  L E G   F S++  + I P ++H  CM++LLGR+  + +A +LI   P  
Sbjct: 521 VLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKS 580

Query: 490 P-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
                +W  LL  C +  D    ++A++ LFEL+P N+G Y++LSN++ +  ++ + A +
Sbjct: 581 AVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKKQYSEAAVV 640

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           R   KS+ + K   Y+ IEI NK H F++ DR HP++E IY  L KL  K+ EAG+ P T
Sbjct: 641 RQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMIEAGYRPET 700

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
           +  L+D +EEEK   +  HSEKLA+A+ L+    G T IRI+KN+RVC DCH   KF S 
Sbjct: 701 EAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPG-TEIRIIKNLRVCLDCHNATKFISK 759

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +  R I++RD++RFHHF  G CSC D W
Sbjct: 760 VTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 124/234 (52%), Gaps = 7/234 (2%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            A+ + H R   ++  R  FD MP +   S+N  I+G+A  G +  A+ +F +M K    
Sbjct: 352 TAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVR 411

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L+ACAQL  L  GK +H  I   +L  NV+V  AL DMYAK G I +AR +
Sbjct: 412 PNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRI 471

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ M+N+N+VSWN MI+GY  +GQ  + + L+++M    L P   T  ++L AC   G +
Sbjct: 472 FNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLV 531

Query: 274 DDAGRLF------HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           ++  ++F      + I      C T M+    + G+ ++A  L +E     V P
Sbjct: 532 EEGWKVFRSMTDDYAINPGIEHC-TCMVDLLGRAGQLKEAFELISEFPKSAVGP 584



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 172/383 (44%), Gaps = 52/383 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
             L+S +++ G V+  R LFD M   D V+YN  I+G++  G    ++ +F+ +      
Sbjct: 251 TGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLW 310

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T V+ +   +        + +HG ++      N  V  A+T ++ +  +++ AR  
Sbjct: 311 PNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKA 370

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ---- 269
           FD M  + + SWN MISGY +NG  +  + LF++M  L + P+ +T+S+ L AC Q    
Sbjct: 371 FDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGAL 430

Query: 270 -------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G I +A R+F+ +  K+ V W  MI GY
Sbjct: 431 SLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGY 490

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL L+ +ML   + P   +  SV+ +C+     + G V  G  V   + DD 
Sbjct: 491 GLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACS-----HGGLVEEGWKVFRSMTDDY 545

Query: 359 LVS------SALIDMYCKCGVTDDAWTVFNMMPTRNVVS--WNSMING-YAQNGQDLEAL 409
            ++      + ++D+  + G   +A+ + +  P   V    W +++         DL  L
Sbjct: 546 AINPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKL 605

Query: 410 ALYDKLLQENLKPDSFTFVSVLS 432
           A   KL +  L P++  +  +LS
Sbjct: 606 A-SQKLFE--LDPENSGYYVLLS 625



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 167/353 (47%), Gaps = 42/353 (11%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           + FV +AL  +Y     +D AR +FD + + + V WN +++G        + ++ F  M 
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGL----SGSEAVESFARMV 203

Query: 250 LLG-LNPDEVTVSNIL-----------GACFQT------------------------GRI 273
             G + PD  T++++L           G C  +                        G +
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           + A  LF ++++ D V +  +I GY+ NG    ++ LF E+++  + P+  ++ +++   
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           +        Q +HG  +  G   +  VS+A+  ++C+    + A   F+ MP + + SWN
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI+GYAQNG    A+AL++++++ N++P+  T  S LSAC        G+     I   
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGK-WLHRIITE 442

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             + P++     +I++  +   + +A  +  ++ +K N + W+ +++   + G
Sbjct: 443 EDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNK-NVVSWNAMIAGYGLHG 494



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 165/343 (48%), Gaps = 41/343 (11%)

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           D    S +    F   R+D A ++F  +   D V W T++ G + +    +A+  F  M+
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMV 203

Query: 316 SE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            +  VRPD  +++SV+ + A++A +  G+ VH  A   G+ +   V + LI +Y KCG  
Sbjct: 204 CDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDV 263

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS----- 429
           + A  +F+MM   ++V++N++I+GY+ NG    ++ L+ +L+   L P+S T V+     
Sbjct: 264 ESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVH 323

Query: 430 ------VLSACLHADLFERG-----------------QNHFDSISAVHGITP--SLDHYA 464
                 +L+ CLH  + + G                  N  +S        P  +++ + 
Sbjct: 324 SPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWN 383

Query: 465 CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
            MI+   ++   + AV L + +     +PN +  S+ LS CA  G +  G+   R + E 
Sbjct: 384 AMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITE- 442

Query: 522 EPINAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           E +    Y+M  L +MYA CG   +   I ++M +KNV  + A
Sbjct: 443 EDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNA 485



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 89/236 (37%), Gaps = 64/236 (27%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++  + L K L   +     EPN  ++   L+  YAK G +  AR +F+ M  ++++S
Sbjct: 424 CAQLGALSLGKWLHRIITEEDLEPNV-YVMTALIDMYAKCGSISEARRIFNTMDNKNVVS 482

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WNA+                               IAG+   G   EAL+++  M     
Sbjct: 483 WNAM-------------------------------IAGYGLHGQGAEALKLYKDMLDAHL 511

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            PT  T +S L AC+           HG +V    G  VF   ++TD YA    I+    
Sbjct: 512 LPTSATFLSVLYACS-----------HGGLV--EEGWKVF--RSMTDDYAINPGIEHCTC 556

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           + D +                + GQ K+  +L  E     + P       +LGAC 
Sbjct: 557 MVDLLG---------------RAGQLKEAFELISEFPKSAVGPG--VWGALLGACM 595



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 14/196 (7%)

Query: 321 PDKFSISSVVSSCAKL-------ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           PD FS +   +S A L       AS    + +H  AV  G   D  V+SAL  +Y     
Sbjct: 105 PDSFSFAFAATSLAALCSRGGGAASSSAARALHALAVAAGYAADTFVASALAKLYFVLSR 164

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLS 432
            D A  VF+ +P+ + V WN+++ G + +    EA+  + +++ + +++PD+ T  SVL 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLP 220

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           A         G+    S +   G+         +I+L  +  DV+ A  L   +  KP+ 
Sbjct: 221 AAAEVADVTMGRC-VHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMM-EKPDL 278

Query: 493 LIWSTLLSVCAMKGDI 508
           + ++ L+S  ++ G +
Sbjct: 279 VAYNALISGYSVNGMV 294


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 364/638 (57%), Gaps = 32/638 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+   AR+G +   R +FD +  +  V +   I+ +     + EA+++F    
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GG 205
           +D FEP  YT  S ++AC +L  +R G Q+H   +   L  +  V   L DMYAK   G 
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ 306

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            +D A  +F+RM   +++SW  +ISGY+++G Q  K + LF EM    + P+ +T S+IL
Sbjct: 307 AMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSIL 366

Query: 265 GACFQTGRIDDAGRLFH--VIKEKDNVCWTT---MIVGYTQNGKEEDALILFNEMLSEDV 319
            +C       D+GR  H  VIK       T    ++  Y ++G  E+A  +FN++    +
Sbjct: 367 KSCASISD-HDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 320 RP---------------------DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            P                        + +S++S+ A +  L  GQ +H  ++  G   D 
Sbjct: 426 IPCITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDR 485

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS++L+ MY +CG  +DA   FN +  RNV+SW SMI+G A++G    AL+L+  ++  
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +KP+  T+++VLSAC H  L   G+ +F S+   HG+ P ++HYACM++LL RS  V +
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKE 605

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A++ I  +P K ++L+W TLL  C    +I+ GE+ A+++ ELEP +  PY++LSN+YA 
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYAD 665

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W++VA IRS+M+  N+ K    SW+E++N  H+F + D +HP  + IY +L  L+++
Sbjct: 666 AGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQ 725

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P+T +VLHD  +E K + +  HSEK+A+A+ LI       PIRI KN+RVC D
Sbjct: 726 IKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTS-APKPIRIFKNLRVCAD 784

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K+ S    R IILRDSNRFH    G CSC + W
Sbjct: 785 CHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 41  LAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSA 99
           L K  Q H M L     +  F+ N L+  Y++ G L  A   F+++  R++ISW +++S 
Sbjct: 466 LTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISG 525

Query: 100 HARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
            A+ G  +   +LF  M +     + V+Y   ++  ++ G  RE  + F  MQ+D
Sbjct: 526 LAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 345/592 (58%), Gaps = 39/592 (6%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L V   +     EP    +   LN C  L  L++G+ IH  I       ++ + N + +M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YAK G +++A+ LFD+M  +++VSW ++ISGY ++GQ  + + LF +M  LG  P+E T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 261 SNILGACFQTGRIDDAGR------------------------------------LFHVIK 284
           S++L A   TG  D  GR                                    +F+ + 
Sbjct: 210 SSLLKAS-GTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            K+ V W  +I G+ + G+ E  + LF +ML +   P  F+ SSV ++CA   SL  G+ 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKW 328

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VH   +  G      + + LIDMY K G   DA  VF  +  +++VSWNS+I+GYAQ+G 
Sbjct: 329 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 388

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EAL L++++L+  ++P+  TF+SVL+AC H+ L + GQ +F+ +   H I   + H+ 
Sbjct: 389 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHV 447

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            +++LLGR+  +++A   I+ +P KP + +W  LL  C M  ++  G  AA  +FEL+P 
Sbjct: 448 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPH 507

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           ++GP+++LSN+YA+ GR  D A +R  MK   VKK  A SW+EI+N+VH FV+ D +HP 
Sbjct: 508 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPM 567

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            E I     K+  K++E G+ P+T  VL    ++++   + YHSEKLALA+ ++K P G+
Sbjct: 568 REEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGL 627

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IRI KNIR+CGDCH   KFAS ++GR II+RD+NRFHHF+ G CSC+D W
Sbjct: 628 T-IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 68/408 (16%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y++++  CT +  ++  + + +H+  + +E +   L N +L+ YAK G L  A+DLFDKM
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLL-NFILNMYAKCGSLEEAQDLFDKM 166

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P +D++SW  L+S +++SG                                + EAL +F 
Sbjct: 167 PTKDMVSWTVLISGYSQSGQ-------------------------------ASEALALFP 195

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M    F+P ++T  S L A         G+Q+H   +      NV V ++L DMYA+  
Sbjct: 196 KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA 255

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            + +A+ +F+ +  +N+VSWN +I+G+ + G+ +  + LF +M   G  P   T S++  
Sbjct: 256 HMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFT 315

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    ++G I DA ++F  + ++D V 
Sbjct: 316 ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS 375

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W ++I GY Q+G   +AL LF +ML   V+P++ +  SV+++C+    L  GQ       
Sbjct: 376 WNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK 435

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMIN 397
              ++  +     ++D+  + G  ++A      MP +   + W +++ 
Sbjct: 436 KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLG 483



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 163/333 (48%), Gaps = 21/333 (6%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           H R LH ++    L Y  D+       ++   ++LL  +AR   +++ + +F+ +  ++ 
Sbjct: 224 HGRQLHAFS----LKYGYDM-------NVHVGSSLLDMYARWAHMREAKVIFNSLAAKNV 272

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           VS+N  IAG A KG     +++F +M +  FEPT +T+ S   ACA    L +GK +H  
Sbjct: 273 VSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAH 332

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           ++        ++ N L DMYAK G I  A+ +F R+  +++VSWN +ISGY ++G   + 
Sbjct: 333 VIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEA 392

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVG 297
           + LF++M    + P+E+T  ++L AC  +G +D+    F ++K    E       T++  
Sbjct: 393 LQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDL 452

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD- 356
             + G+  +A     EM    ++P      +++ SC    ++  G  V+    +  +D  
Sbjct: 453 LGRAGRLNEANKFIEEM---PIKPTAAVWGALLGSCRMHKNMDLG--VYAAEQIFELDPH 507

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           D      L ++Y   G   DA  V  MM    V
Sbjct: 508 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGV 540



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 128/291 (43%), Gaps = 47/291 (16%)

Query: 2   KAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           + +H +R  +  L  +G   T   Y+ +   C     +E  K + +H+  +  +P   ++
Sbjct: 287 EGEHVMRLFLQML-RQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQP-IAYI 344

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            N L+  YAKSG +  A+ +F ++  +DI+SWN+++S                       
Sbjct: 345 GNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIIS----------------------- 381

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                   G+A  G   EALQ+F +M K + +P + T +S L AC+    L  G+     
Sbjct: 382 --------GYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFEL 433

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKK 240
           +    +   V     + D+  + G +++A    + M  +   + W  +    L + +  K
Sbjct: 434 MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGAL----LGSCRMHK 489

Query: 241 CIDL--FQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKE 285
            +DL  +   Q+  L+P +    V +SNI  +    GR+ DA ++  ++KE
Sbjct: 490 NMDLGVYAAEQIFELDPHDSGPHVLLSNIYAS---AGRLSDAAKVRKMMKE 537


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/647 (36%), Positives = 371/647 (57%), Gaps = 51/647 (7%)

Query: 96  LLSAHARSGSVQDL---RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDR 151
           L+    +  S+ DL   R +FDKM  ++ V++   I   A  G++ EA+ +F  M     
Sbjct: 198 LIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSG 257

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           + P  +T    ++ CA++  L  GK++H  ++   L  ++ V  +L DMYAK G + +AR
Sbjct: 258 YVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEAR 317

Query: 212 WLFDRMNNRNLVSWNLMISGYLK--NGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC- 267
            +FD M   N++SW  +++GY++   G  ++ + +F  M L  G+ P+  T S +L AC 
Sbjct: 318 KVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACA 377

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT- 292
                                              ++GR++ A + F V+ EK+ V  T 
Sbjct: 378 SLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETV 437

Query: 293 ---TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
              T +  +  N +++    L  E+         F+ +S++S  A + ++  G+ +H   
Sbjct: 438 VDDTNVKDFNLNSEQD----LDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMV 493

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V +G   DL V++ALI MY KCG  + A  VFN M   NV++W S+ING+A++G   +AL
Sbjct: 494 VKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKAL 553

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L+  +L+  +KP+  T+++VLSAC H  L +    HF S+   HGI P ++HYACM++L
Sbjct: 554 ELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDL 613

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGRS  + +A++ I S+P   ++L+W T L  C +  + K GE AA+ + E EP +   Y
Sbjct: 614 LGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATY 673

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I+LSN+YA  GRWEDVA+IR +MK K + K A  SWIE++N+VHKF   D  HP+ + IY
Sbjct: 674 ILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIY 733

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
           E+L +L  K++  G+ PNT  VLHD ++E+K + +  HSEKLA+A+ LI  P+   PIR+
Sbjct: 734 EKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNP-KPIRV 792

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+RVCGDCH  +K+ S + GR I++RD+NRFHH   G CSC D W
Sbjct: 793 FKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 155/581 (26%), Positives = 249/581 (42%), Gaps = 134/581 (23%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--R 220
           L  C +  +   GK +H K+   NL  +  + N+L  +Y+K  +   A  +F  M N  R
Sbjct: 59  LKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKR 118

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC-----FQTG--- 271
           ++VS++ +IS +  N    K +++F ++ L  G+ P+E   + ++ AC     F+TG   
Sbjct: 119 DVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCL 178

Query: 272 -------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                           ++ A ++F  ++EK+ V WT MI    Q
Sbjct: 179 FGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQ 238

Query: 301 NGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
            G  ++A+ LF EML S    PD+F+++ ++S CA++  L  G+ +H   +  G+  DL 
Sbjct: 239 YGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLC 298

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ--NGQDLEALALY-DKLL 416
           V  +L+DMY KCG+  +A  VF+ M   NV+SW +++NGY +   G + EA+ ++ + LL
Sbjct: 299 VGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLL 358

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA--CMINLL---- 470
           Q  + P+ FTF  VL AC     F+ G+        VHG T  L   A  C+ N L    
Sbjct: 359 QGGVAPNCFTFSGVLKACASLPDFDFGEQ-------VHGQTIKLGLSAIDCVGNGLVSVY 411

Query: 471 ---GRSSDVDKAVDL-------------------------------IKSLPHKPNSLIWS 496
              GR     K  D+                               ++ +    +S  ++
Sbjct: 412 AKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYA 471

Query: 497 TLLSVCAMKGDIKHGE----MAARHLF--ELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           +LLS  A  G I  GE    M  +  F  +L   NA     L +MY+ CG  E    + +
Sbjct: 472 SLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNA-----LISMYSKCGNKEAALQVFN 526

Query: 551 SMKSKNVKKFAAYSWIEIDNKV--HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
            M+  NV      +W  I N    H F S+       E+ Y  L        E G  PN 
Sbjct: 527 DMEDCNV-----ITWTSIINGFAKHGFASK-----ALELFYNML--------ETGVKPND 568

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALA---YCLIKKPHGVTP 646
              +        V S C H   +  A   +  ++  HG+ P
Sbjct: 569 VTYI-------AVLSACSHVGLIDEAWKHFTSMRDNHGIVP 602



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 129/561 (22%), Positives = 240/561 (42%), Gaps = 97/561 (17%)

Query: 5   HKLRQAIDTLYSRGQAATEE----AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
            +L +AI TL      +T        + L+  C R  +  L K L   +  +   P  T 
Sbjct: 30  QQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNL-PLDTL 88

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKM--PLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           L N L+  Y+KS     A  +F  M    RD++S+++++S  A + +      +FD++ +
Sbjct: 89  LLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLL 148

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D V                               P +Y   + + AC +    + G  +
Sbjct: 149 QDGVY------------------------------PNEYCFTAVIRACLKGGFFKTGLCL 178

Query: 179 HGKIV-VGNLGGNVFVRNALTDMYAKG---GEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            G ++  G    +V V   L DM+ KG    +++ AR +FD+M  +N+V+W LMI+   +
Sbjct: 179 FGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQ 238

Query: 235 NGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT----------------------- 270
            G   + IDLF EM +  G  PD  T++ ++  C +                        
Sbjct: 239 YGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLC 298

Query: 271 ------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK--EEDALILFNEMLS 316
                       G + +A ++F  ++E + + WT ++ GY + G   E +A+ +F+ ML 
Sbjct: 299 VGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLL 358

Query: 317 E-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           +  V P+ F+ S V+ +CA L     G+ VHG+ + LG+     V + L+ +Y K G  +
Sbjct: 359 QGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRME 418

Query: 376 DAWTVFNMMPTRNVVSW----NSMINGYAQNG-QDLEALALYDKLLQENLKPDSFTFVSV 430
            A   F+++  +N+VS     ++ +  +  N  QDL+    Y           SFT+ S+
Sbjct: 419 SARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEY-----VGSGVSSFTYASL 473

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LS         +G+     +  + G    L     +I++  +  + + A+ +   +    
Sbjct: 474 LSGAACIGTIGKGEQIHAMVVKI-GFRTDLSVNNALISMYSKCGNKEAALQVFNDM-EDC 531

Query: 491 NSLIWSTLLSVCAMKGDIKHG 511
           N + W+++++     G  KHG
Sbjct: 532 NVITWTSIIN-----GFAKHG 547



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 136/287 (47%), Gaps = 38/287 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF--ANKGFSREALQVFSR 146
           D+    +L+  +A+ G VQ+ R +FD M   + +S+   + G+     G+ REA+++FS 
Sbjct: 296 DLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSN 355

Query: 147 M-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M  +    P  +T    L ACA L D   G+Q+HG+ +   L     V N L  +YAK G
Sbjct: 356 MLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSG 415

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL- 264
            ++ AR  FD +  +NLVS  ++    +K+       DL +E++ +G      T +++L 
Sbjct: 416 RMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLS 475

Query: 265 -GACFQT---------------------------------GRIDDAGRLFHVIKEKDNVC 290
             AC  T                                 G  + A ++F+ +++ + + 
Sbjct: 476 GAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVIT 535

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           WT++I G+ ++G    AL LF  ML   V+P+  +  +V+S+C+ + 
Sbjct: 536 WTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVG 582



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 119/233 (51%), Gaps = 19/233 (8%)

Query: 94  NALLSAHARSGSVQDLR----ALFDKMPIRDSVSYNTAIAGF---ANKGFSREALQVFSR 146
           N L+S +A+SG ++  R     LF+K  + ++V  +T +  F   + +   RE   V S 
Sbjct: 405 NGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSG 464

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +       + +T+ S L+  A +  + +G+QIH  +V      ++ V NAL  MY+K G 
Sbjct: 465 V-------SSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGN 517

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            + A  +F+ M + N+++W  +I+G+ K+G   K ++LF  M   G+ P++VT   +L A
Sbjct: 518 KEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSA 577

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM 314
           C   G ID+A + F  +++   +      +  M+    ++G   +A+   N M
Sbjct: 578 CSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSM 630


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 343/589 (58%), Gaps = 40/589 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F ++   +   +   I G+A +G   E+   ++RM++D   P  +T  +   AC   L+
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 172 LRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +  GKQ+H + I++G    +++V N++ D+Y K G +  AR +FD M+ R++VSW  +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
            Y K G  +    LF ++ L                                   KD V 
Sbjct: 218 AYAKYGDMESASGLFDDLPL-----------------------------------KDMVA 242

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA- 349
           WT M+ GY QNG+ ++AL  F +M    +  D+ +++ V+S+CA+L ++ H   +   A 
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 350 -VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
               G   +++V SALIDMY KCG  D+A+ VF +M  RNV S++SMI GYA +G+   A
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L+  +L+  ++P+  TF+ +LSAC HA L E+G+  F  +    G+ PS DHYACM++
Sbjct: 363 LQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVD 422

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+  +++A+DL+K++P +PN  +W  LL  C + G+    ++AA  LF+LEP   G 
Sbjct: 423 LLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGN 482

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN-KVHKFVSEDRTHPETEI 587
           YI+LSN+YA+ GRWE+V+ +R  ++ K  KK    SW E  N ++H F + D THP +  
Sbjct: 483 YILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSE 542

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I + L +LI++L+  G+ PN     +D  ++EK + +  HSEKLALAY L+    G T I
Sbjct: 543 IRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDT-I 601

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +IMKNIR+C DCH  M  AS+I GR II+RD+ RFHHF  G CSC + W
Sbjct: 602 KIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 162/323 (50%), Gaps = 10/323 (3%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G       ++ L   C    +++L K++ +   L     +  ++ N ++  Y K G L  
Sbjct: 137 GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGC 196

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FD+M  RD++SW  L+ A+A+ G ++    LFD +P++D V++   + G+A  G  
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRP 256

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRN 195
           +EAL+ F +MQ    E  + T    ++ACAQL  ++    I         G  GNV V +
Sbjct: 257 KEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGS 316

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL DMY+K G  D+A  +F+ M  RN+ S++ MI GY  +G+    + LF +M    + P
Sbjct: 317 ALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRP 376

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALIL 310
           ++VT   IL AC   G ++   +LF  +++   V      +  M+    + G  E+AL L
Sbjct: 377 NKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDL 436

Query: 311 FNEMLSEDVRPDKFSISSVVSSC 333
              M  E   P+     +++ +C
Sbjct: 437 VKTMPME---PNGGVWGALLGAC 456



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 77  YARDLFDKM---PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           + RD+ ++    P  +++  +AL+  +++ GS  +   +F+ M  R+  SY++ I G+A 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVF 192
            G +  ALQ+F  M K    P   T +  L+AC+    + +G+Q+  K+     +  +  
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
               + D+  + G +++A  L   M    N   W  ++     +G P   I      +L 
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD--IAQIAANELF 473

Query: 252 GLNPDEVT----VSNILGACFQTGRIDDAGRLFHVIKEK 286
            L P+ +     +SNI  +    GR ++  +L  VI+EK
Sbjct: 474 KLEPNGIGNYILLSNIYAS---AGRWEEVSKLRKVIREK 509



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 11/222 (4%)

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT--V 380
           ++ + S++  C   + +   + VH   +  G+     V + LI M  K  V   ++   V
Sbjct: 42  EWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLV 98

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +   N   W +MI GYA  G   E+   Y ++ ++ + P SFTF ++  AC  A   
Sbjct: 99  FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G+        + G    L     MI+L  +   +  A  +   +  + + + W+ L+ 
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIV 217

Query: 501 VCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGR 541
             A  GD++    +A  LF+  P+ +   +  +   YA  GR
Sbjct: 218 AYAKYGDME----SASGLFDDLPLKDMVAWTAMVTGYAQNGR 255


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 401/732 (54%), Gaps = 49/732 (6%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TTFLHN----RL 65
           + +++SR   ++   +T ++  C++    E    +   MDL   + N  T++      R 
Sbjct: 213 MKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRN 272

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L    K G++  AR L        +++  +L+S + + G +   + L + M  RD V++N
Sbjct: 273 LD-AVKEGEMIDARILESPFCSSTLLA-TSLISLYGQCGILDRAKGLLEHMYQRDVVAWN 330

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV- 184
             +   A  G + EA+ +  RM  + F     T++S L ACA L  L +G++IH ++++ 
Sbjct: 331 AMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLC 390

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G L   V V N++  MY K G+ + A  +F+ M  ++ VSWN +I+  + N + +  ++L
Sbjct: 391 GLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALEL 450

Query: 245 FQEMQLLGLNPDEVTVSNILGAC------------------------------------F 268
           F  M+L GL  +E T+ ++L AC                                     
Sbjct: 451 FHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYA 510

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ--NGKEEDALILFNEMLSEDVRPDKFSI 326
           + G + DA + F  ++EK  V W+ ++  Y Q  +G    A   F EM +E ++P + + 
Sbjct: 511 RCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTF 570

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S + +CA +A+L HG+ +H +A   G V+  L++ + +I+MY KCG   DA  VF+ MP
Sbjct: 571 VSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMP 630

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            + ++SWNS+I  YA NG  LEAL+   ++L +   PDS T VS+L    HA L ERG  
Sbjct: 631 EKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVE 690

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAM 504
           HF S    HG+ PS     C+++LL R   +D A +LI + P  + +++ W TLL+ C  
Sbjct: 691 HFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKS 750

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
            GD + G   A  +FELEP ++G +++L+N+YA+ GRW D + IR  M+  +VKK    S
Sbjct: 751 YGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCS 810

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           WIE+   VH+F+S +  HP+   I E+L KL  +++EAG+ P+T  V+HD +E +K + +
Sbjct: 811 WIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEIL 870

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
             HSE+LA+ + L+    G T IR++KN+RVC DCH   K  S ++GR I++RDS+RFHH
Sbjct: 871 SRHSERLAIVFGLMSTRPGET-IRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHH 929

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 930 FKHGQCSCGDFW 941



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/486 (26%), Positives = 239/486 (49%), Gaps = 40/486 (8%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           + +   V D   +FD +  ++  S+   +A ++  G  REAL++F+RMQ +   P     
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           V AL+ACA   +L  G+QIH  +V   L  N+ + N+L +MY K  ++  A  +FD M  
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ---------- 269
           R++VSW  M++ Y +NG   + ++    M   G+ P++VT   I+  C +          
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 270 -------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                     G  DD   +F  + +   + WTTMI G +QNG+ 
Sbjct: 182 HHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQY 241

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E+ L++F +M  E V+ ++ +  S+V  C  L ++  G+++  + +        L++++L
Sbjct: 242 EEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSL 301

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I +Y +CG+ D A  +   M  R+VV+WN+M+   AQNG + EA+ L  ++  E    + 
Sbjct: 302 ISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANK 361

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            T++SVL AC + +   +G+     +     +   +     +I + G+    + A+ + +
Sbjct: 362 VTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFE 421

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGE-MAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           ++P K + + W+ +++  A  G+ K  + +   H  ELE + +  + +LS +  ACG  E
Sbjct: 422 AMPRK-DDVSWNAVIN--ASVGNSKFQDALELFHGMELEGLRSNEFTLLS-LLEACGGLE 477

Query: 544 DVASIR 549
           D+   R
Sbjct: 478 DLKLAR 483



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 144/566 (25%), Positives = 259/566 (45%), Gaps = 44/566 (7%)

Query: 70  AKSGKLFYARDLFDKMP----LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           A SG+L + R +   +       +II  N+L++ + +   V     +FD M +RD VS+ 
Sbjct: 69  AASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWT 128

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             +A +A  G   +AL+  SRM  +  +P   T V+ ++ CA+L  L  G++IH +I+  
Sbjct: 129 AMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINE 188

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  +  + NAL  MY   G  D  + +F RM   +++ W  MI+G  +NGQ ++ + +F
Sbjct: 189 GLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVF 248

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           ++M L G+  +EVT  +++  C                                    Q 
Sbjct: 249 RKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQC 308

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +D A  L   + ++D V W  M+    QNG   +A+ L   M  E    +K +  SV+
Sbjct: 309 GILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVL 368

Query: 331 SSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            +CA L +L  G+ +H + ++ G +  ++ V +++I MY KCG T+ A +VF  MP ++ 
Sbjct: 369 EACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDD 428

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSWN++IN    N +  +AL L+  +  E L+ + FT +S+L AC   +  +  +     
Sbjct: 429 VSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHAR 488

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
            +A      S      ++N+  R   +  A     SL  K   + WS +L+  A   D  
Sbjct: 489 AAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEK-GLVAWSIILAAYAQSKD-G 546

Query: 510 HGEMAARHLFELEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
            G  A +   E+E     P  +   +   AC     +   RS  +      F   S + +
Sbjct: 547 PGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLV-L 605

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSK 594
            N +     +  +  + +++++++ +
Sbjct: 606 GNTIINMYGKCGSPSDAKLVFDQMPE 631



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 187/388 (48%), Gaps = 45/388 (11%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K   +  A  +FD ++ +N+ SW +M++ Y +NG  ++ ++LF  MQ  G  PD+V 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 260 VSNILGACFQTGRIDD-----------------------------------AGRLFHVIK 284
               L AC  +G +D                                    A ++F  + 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +D V WT M+  Y QNG    AL   + M +E V+P++ +  ++V  CAKL  L  G+ 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H + +  G++ D ++ +AL+ MY  CG  DD  +VF+ M   +V+ W +MI G +QNGQ
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             E L ++ K+  E +K +  T++S++  C + D  + G+   D+         S     
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGE-MIDARILESPFCSSTLLAT 299

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF---EL 521
            +I+L G+   +D+A  L++ + ++ + + W+ +++ CA  GD       A HL    ++
Sbjct: 300 SLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGD----NWEAIHLLRRMDM 354

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIR 549
           E   A     LS +  AC   E ++  R
Sbjct: 355 EGFGANKVTYLS-VLEACANLEALSQGR 381



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 198/473 (41%), Gaps = 86/473 (18%)

Query: 2   KAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           +A H LR+    +   G  A +  Y  ++  C  +  +   + + + + L         +
Sbjct: 344 EAIHLLRR----MDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAV 399

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            N ++  Y K G+   A  +F+ MP +D +SWNA+++A   +   QD             
Sbjct: 400 GNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQD------------- 446

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                             AL++F  M+ +     ++T +S L AC  L DL+  +QIH +
Sbjct: 447 ------------------ALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHAR 488

Query: 182 IVVGNLGGN-VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL--KNGQP 238
              G  GGN   V N++ +MYA+ G +  A+  FD +  + LV+W+++++ Y   K+G  
Sbjct: 489 AAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPG 548

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------------ 268
           ++    FQEM+  G+ P EVT  + L AC                               
Sbjct: 549 RRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNT 608

Query: 269 ------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G   DA  +F  + EK  + W ++IV Y  NG   +AL    EML +   PD
Sbjct: 609 IINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPD 668

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA----LIDMYCKCGVTDDAW 378
             +  S++   +    L  G V H ++ +   D  L  SS     L+D+  + G  D A 
Sbjct: 669 SGTSVSILYGLSHAGLLERG-VEHFRSSIQ--DHGLEPSSGQLKCLVDLLARKGFLDAAE 725

Query: 379 TVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFV 428
            +    P    + ++W +++      G     +   +++ +  L+P  S +FV
Sbjct: 726 ELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFE--LEPQHSGSFV 776



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 99/231 (42%), Gaps = 46/231 (19%)

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KC    DA  VF+ +  +NV SW  M+  Y+QNG   EAL L+ ++  E  +PD   
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV---------- 476
           FV  L AC  +   + G+    S+    G+T ++     ++N+ G+  DV          
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVG-SGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 477 ---------------------DKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE 512
                                 +A++ +  +     KPN + + T++ VCA    +  G 
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179

Query: 513 MAARHLFELEPINAG--PYIMLSN----MYAACGRWEDVASIRSSMKSKNV 557
                +     IN G  P  +L N    MY +CG ++D+ S+ S M   +V
Sbjct: 180 KIHHRI-----INEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSV 225


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 343/589 (58%), Gaps = 40/589 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F ++   +   +   I G+A +G   E+   ++RM++D   P  +T  +   AC   L+
Sbjct: 98  VFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALN 157

Query: 172 LRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           +  GKQ+H + I++G    +++V N++ D+Y K G +  AR +FD M+ R++VSW  +I 
Sbjct: 158 MDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIV 217

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
            Y K G                                    ++ A  LF  +  KD V 
Sbjct: 218 AYAKYGD-----------------------------------MESASGLFDDLPSKDMVA 242

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA- 349
           WT M+ GY QNG+ ++AL  F +M    +  D+ +++ V+S+CA+L ++ H   +   A 
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 350 -VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
               G   +++V SALIDMY KCG  D+A+ VF +M  RNV S++SMI GYA +G+   A
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L+  +L+  ++P+  TF+ +LSAC HA L E+G+  F  +    G+ PS DHYACM++
Sbjct: 363 LQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVD 422

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+  +++A+DL+K++P +PN  +W  LL  C + G+    ++AA  LF+LEP   G 
Sbjct: 423 LLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIGN 482

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN-KVHKFVSEDRTHPETEI 587
           YI+LSN+YA+ GRWE+V+ +R  ++ K  KK    SW E  N ++H F + D THP +  
Sbjct: 483 YILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSSE 542

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I + L +LI++L+  G+ PN     +D  ++EK + +  HSEKLALAY L+    G T I
Sbjct: 543 IRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDT-I 601

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +IMKNIR+C DCH  M  AS+I GR II+RD+ RFHHF  G CSC + W
Sbjct: 602 KIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 10/323 (3%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G       ++ L   C    +++L K++ +   L     +  ++ N ++  Y K G L  
Sbjct: 137 GVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGC 196

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FD+M  RD++SW  L+ A+A+ G ++    LFD +P +D V++   + G+A  G  
Sbjct: 197 ARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRP 256

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRN 195
           +EAL+ F +MQ    E  + T    ++ACAQL  ++    I         G  GNV V +
Sbjct: 257 KEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGS 316

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL DMY+K G  D+A  +F+ M  RN+ S++ MI GY  +G+    + LF +M    + P
Sbjct: 317 ALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRP 376

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALIL 310
           ++VT   IL AC   G ++   +LF  +++   V      +  M+    + G  E+AL L
Sbjct: 377 NKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDL 436

Query: 311 FNEMLSEDVRPDKFSISSVVSSC 333
              M  E   P+     +++ +C
Sbjct: 437 VKTMPME---PNGGVWGALLGAC 456



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 102/219 (46%), Gaps = 14/219 (6%)

Query: 77  YARDLFDKM---PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           + RD+ ++    P  +++  +AL+  +++ GS  +   +F+ M  R+  SY++ I G+A 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVF 192
            G +  ALQ+F  M K    P   T +  L+AC+    + +G+Q+  K+     +  +  
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
               + D+  + G +++A  L   M    N   W  ++     +G P   I      +L 
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPD--IAQIAANELF 473

Query: 252 GLNPDEVT----VSNILGACFQTGRIDDAGRLFHVIKEK 286
            L P+ +     +SNI  +    GR ++  +L  VI+EK
Sbjct: 474 KLEPNGIGNYILLSNIYAS---AGRWEEVSKLRKVIREK 509



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 87/203 (42%), Gaps = 10/203 (4%)

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT--V 380
           ++ + S++  C   + +   + VH   +  G+     V + LI M  K  V   ++   V
Sbjct: 42  EWRLMSILHDCTLFSQI---KQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLV 98

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +   N   W +MI GYA  G   E+   Y ++ ++ + P SFTF ++  AC  A   
Sbjct: 99  FGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNM 158

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G+        + G    L     MI+L  +   +  A  +   +  + + + W+ L+ 
Sbjct: 159 DLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSER-DVVSWTELIV 217

Query: 501 VCAMKGDIKHGEMAARHLFELEP 523
             A  GD++    +A  LF+  P
Sbjct: 218 AYAKYGDME----SASGLFDDLP 236


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/591 (37%), Positives = 343/591 (58%), Gaps = 40/591 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R +F ++   +   +   I G+A +G   E++ +++ M++    P  +T  + L AC+  
Sbjct: 93  RLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAA 152

Query: 170 LDLRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           LD+  G+Q+H + I++G  G +++V N L DMY K G +     +FD M +R+++SW  +
Sbjct: 153 LDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSL 212

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           I  Y K                                    G ++ A  LF  +  KD 
Sbjct: 213 IVAYAK-----------------------------------VGNMEAASELFDGLPMKDM 237

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH-- 346
           V WT M+ GY QN +  +AL +F  M +  V+ D+ ++  V+S+CA+L +  +   V   
Sbjct: 238 VAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDV 297

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
            +    G   +++V SALIDMY KCG  +DA+ VF  M  RNV S++SMI G+A +G   
Sbjct: 298 AEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAG 357

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
            A+ L+D++L+  +KP+  TF+ VL+AC HA + E+GQ  F  +   HG+ PS DHYACM
Sbjct: 358 AAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACM 417

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++LLGR+  +++A++L+K +P  P+  +W  LL  C + G+    ++AA HLFELEP   
Sbjct: 418 VDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGI 477

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK-VHKFVSEDRTHPET 585
           G YI+LSN+YA+ GRW+DV+ +R  M++K +KK    SW+E     +H+F + D +HP++
Sbjct: 478 GNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDMSHPKS 537

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             I + L  L+ +L+  G+ PN   V +D  +EEK + +  HSEKLALA+ L+    G T
Sbjct: 538 REIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTTNAGCT 597

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            IRI+KN+R+C DCH  M  AS I GR I++RD+ RFHHF  G CSC + W
Sbjct: 598 -IRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 189/388 (48%), Gaps = 17/388 (4%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           +++  +G       +T L+  C+   DV L +++ +   L     +  ++ N L+  Y K
Sbjct: 128 NSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVK 187

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            G L     +FD+M  RD+ISW +L+ A+A+ G+++    LFD +P++D V++   + G+
Sbjct: 188 CGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGY 247

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--G 189
           A     REAL+VF RMQ    +  + T V  ++ACAQL   +    +         G   
Sbjct: 248 AQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTS 307

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           NV V +AL DMYAK G ++ A  +F+RM  RN+ S++ MI G+  +G     ++LF EM 
Sbjct: 308 NVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEML 367

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKE 304
              + P+ VT   +L AC   G ++   +LF +++E   V      +  M+    + G+ 
Sbjct: 368 KTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRL 427

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL---GVDDDLLVS 361
           E+AL L   M    + P      +++ +C    +    Q+       L   G+ + +L+S
Sbjct: 428 EEALNLVKMM---PMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGIGNYILLS 484

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNV 389
               ++Y   G  DD   V  +M  + +
Sbjct: 485 ----NIYASAGRWDDVSKVRKLMRAKGL 508


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 344/578 (59%), Gaps = 40/578 (6%)

Query: 158 THVS----ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           THVS     L  CA+   L +GK  H +I++  L  ++   N L +MY+K G +D AR +
Sbjct: 62  THVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQV 121

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M +R+LVSWN MI    +NG+  + +DL  +MQ  G    E T+S++L AC      
Sbjct: 122 FDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCAL 181

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA  +F  + ++  V W++M  GY
Sbjct: 182 SECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGY 241

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E AL LF +     ++ D+F +SSV+ +CA LA++  G+ V+      G   ++
Sbjct: 242 VQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNI 301

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V+S+LIDMY KCG  ++++ VF  +  RNVV WN+MI+G +++ + LE + L++K+ Q 
Sbjct: 302 FVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQM 361

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L P+  TFVSVLSAC H  L ++GQ +FD ++  H + P++ HY+CM++ L R+  + +
Sbjct: 362 GLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFE 421

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A DLI  LP   ++ +W +LL+ C   G+++  E+AA+ LF++EP N+G Y++LSNMYAA
Sbjct: 422 AYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAA 481

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W++VA +R  +K  +VKK    SWIEI +KVH F+  +R HP+   IY +L++++ +
Sbjct: 482 NGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDE 541

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           LQ+ G+   T+  LH   E  K + + +HSEKLA    L+  P    PIRIMKN+R+CGD
Sbjct: 542 LQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPN-APIRIMKNLRICGD 600

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH FMK AS    R +I+RD+NRFHHF  G CSC D W
Sbjct: 601 CHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 198/413 (47%), Gaps = 58/413 (14%)

Query: 52  NFYEPNTTFLHNRLLHFYAK-----SGKLFYARDLFDKMPLR-DIISWNALLSAHARSGS 105
           +F   + +F+H  +L   AK      GK  +A+ L   M L+ D+++ N L++ +++ GS
Sbjct: 58  DFNATHVSFVH-EILKLCAKRKLLLQGKACHAQILL--MGLKTDLLTSNILINMYSKCGS 114

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           V   R +FD+MP R  VS+NT I      G   EAL +  +MQ++    +++T  S L A
Sbjct: 115 VDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCA 174

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           CA    L   + +H   +   +  NVFV  AL D+YAK G +  A  +F+ M +R++V+W
Sbjct: 175 CAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTW 234

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------ 267
           + M +GY++N   ++ + LF++    GL  D+  +S+++ AC                  
Sbjct: 235 SSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSK 294

Query: 268 -----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                             + G I+++ ++F  +++++ V W  MI G +++ +  + +IL
Sbjct: 295 SGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMIL 354

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-----SALI 365
           F +M    + P+  +  SV+S+C  +  +  GQ    K   L   +  L       S ++
Sbjct: 355 FEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQ----KYFDLMTKEHHLAPNVFHYSCMV 410

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ----DLEALALYD 413
           D   + G   +A+ + + +P     S W S++     +G     ++ A  L+D
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/650 (35%), Positives = 365/650 (56%), Gaps = 68/650 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D    NAL+  +A+    +    +FD+M  R+ V++N+ I+  A  G   +AL +F RMQ
Sbjct: 209 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 268

Query: 149 --KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
             +D  +P  +T  + L  CA   +  +G+QIH  ++  N+  N+ V   L  MY++ G 
Sbjct: 269 ESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGR 328

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A+ +F+RM  RN  SWN MI GY +NG+ ++ + LF++MQL G+ PD  ++S++L +
Sbjct: 329 LNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSS 388

Query: 267 CF-----QTGR------------------------------IDDAGRLFH--VIKEKDNV 289
           C      Q GR                              +D A +++   + K+++  
Sbjct: 389 CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTA 448

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W +++ GY   G ++++   F EML  D+  D  ++ ++V+                  
Sbjct: 449 LWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL----------------- 491

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
                   L++ +AL+DMY KCG    A TVF+ M  +N+VSWN+MI+GY+++G   EAL
Sbjct: 492 --------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEAL 543

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            LY+++ ++ + P+  TF+++LSAC H  L E G   F S+   + I    +HY CM++L
Sbjct: 544 ILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDL 603

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  ++ A + ++ +P +P    W  LL  C +  D+  G +AA+ LFEL+P N GPY
Sbjct: 604 LGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPY 663

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           +++SN+YAA GRW++V  IR  MK K VKK    SWIEI++++  F +  +THP+TE IY
Sbjct: 664 VIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIY 723

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY---HSEKLALAYCLIKKPHGVTP 646
             L  L  + +  G+ P+T  +L + ++ ++ +   Y   HSE+LAL+  LI  P   T 
Sbjct: 724 NNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKST- 782

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IR+ KN+R+CGDCH   KF S I GR II RD+NRFHHF  G CSC D W
Sbjct: 783 IRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 160/584 (27%), Positives = 267/584 (45%), Gaps = 94/584 (16%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y+ L+ DC   N  +  K + + M  N Y P+  +L  ++L  YA               
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDA-YLMTKILMLYA--------------- 117

Query: 86  PLRDIISWNALLSAHARSGSVQDL---RALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
                           RSG + DL   R LF++MP R+  ++NT I  +A      EA  
Sbjct: 118 ----------------RSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWG 161

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F RM K    P ++T  SAL  C  L     GKQ+H K++     G+ FV NAL DMYA
Sbjct: 162 IFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA 221

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL--GLNPDEVTV 260
           K  + +    +FD M  RN V+WN +IS   + G     + LF  MQ    G+ PD+ T 
Sbjct: 222 KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTF 281

Query: 261 SNILGACF-----------------------------------QTGRIDDAGRLFHVIKE 285
           + +L  C                                    + GR++ A  +F+ + E
Sbjct: 282 TTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAE 341

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           ++   W +MI GY QNG+ ++AL LF +M    ++PD FS+SS++SSC  L+    G+ +
Sbjct: 342 RNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGREL 401

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN--MMPTRNVVSWNSMINGYAQNG 403
           H   V   ++++ ++   L+DMY KCG  D AW V++  +   RN   WNS++ GYA  G
Sbjct: 402 HNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKG 461

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACL----HADLFE------RGQNHFDSISAV 453
              E+   + ++L+ +++ D  T V++++  +      D++       + +  FD+++  
Sbjct: 462 LKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGK 521

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKH 510
           + ++     +  MI+   +     +A+ L + +P K   PN + +  +LS C+  G ++ 
Sbjct: 522 NIVS-----WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEE 576

Query: 511 GEMAARHLFELEPINAGP--YIMLSNMYAACGRWEDVASIRSSM 552
           G      + E   I A    Y  + ++    GR ED       M
Sbjct: 577 GLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKM 620



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 13/209 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   L   L+  Y+K G +  AR +FD M  ++I+SWNA++S +++ G  ++   L+++M
Sbjct: 490 NLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEM 549

Query: 117 PIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           P +    + V++   ++  ++ G   E L++F+ MQ+D        H +    C   L  
Sbjct: 550 PKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYT----CMVDLLG 605

Query: 173 RRGKQIHGKIVVGNLG--GNVFVRNALTDMYAKGGEIDKARWLFDR---MNNRNLVSWNL 227
           R G+    K  V  +     V    AL        ++D  R    R   ++ +N   + +
Sbjct: 606 RAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVI 665

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           M + Y   G+ K+  D+ Q M++ G+  D
Sbjct: 666 MSNIYAAAGRWKEVEDIRQMMKMKGVKKD 694


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 365/640 (57%), Gaps = 8/640 (1%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRD 120
           L   YA++  +  A  + D M    ++ WNA+++  AR G V D   L  +M    P  +
Sbjct: 197 LAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPN 256

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++NT ++G +  G  REAL V + M K    P   T  S L + A    LR G +IH 
Sbjct: 257 VATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHC 316

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +   L  +V+   AL DMYAK G +D A+ + D + +RNL +WN +++GY   G+   
Sbjct: 317 FFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDI 376

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIV 296
            ++L + M+   L+PD  T + ++      G+   A  L   IK      + V WT++I 
Sbjct: 377 ALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLIS 436

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G   NG+ ED+    +EM  + V+P   ++S ++ +CA LA    G+ +H  A+    D 
Sbjct: 437 GSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDC 496

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D++VS+ALIDMY K G    A  +F  +  +N+V  N+M+ G A +GQ  EA+ L+  + 
Sbjct: 497 DMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMW 556

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              LKPDS TF ++L+AC    L   G  +FDS+   +G+ P+ ++YACM++LL R   +
Sbjct: 557 NSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYL 616

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           D+A+D I+  P  P +  W  LL+ C++ G++   E+AAR+LF LEP N+  Y+++ N+Y
Sbjct: 617 DEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMNLY 676

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
                +++  S++ +MK++ V     +SWI+I+  +H F  + + HPET  IYEEL +L+
Sbjct: 677 EYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLV 736

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            ++++AG+ P+T  + ++ QEEEK K +  H+EKLA+ Y LI+      P+R+MKN R+C
Sbjct: 737 FQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMC 796

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   K  S +  R IILRD+ RFHHFV G CSC D W
Sbjct: 797 NDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 195/446 (43%), Gaps = 42/446 (9%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D+V +N  +A  A      EA+ VF  MQ        YT    L+AC +   LR G+ +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAV 178

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +  V   L  MYA+  ++  A  + D M   ++V WN +++   + G  
Sbjct: 179 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLV 238

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
              ++L   M   G  P+  T                               W T++ G 
Sbjct: 239 DDALELAARMSRSGPEPNVAT-------------------------------WNTVLSGC 267

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +++G++ +AL +   ML + +RPD  ++SS++ S A    L HG  +H   +   ++ D+
Sbjct: 268 SRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDV 327

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              +AL+DMY KCG  D A  V + +  RN+ +WNS++ GYA  G+   AL L + + + 
Sbjct: 328 YTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKN 387

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L PD  T+  +++         +       I A  G+TP++  +  +I+    + + + 
Sbjct: 388 RLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAA-GVTPNVVSWTSLISGSCHNGEYED 446

Query: 479 AVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIM 531
           +      +     +P+ +  S LL  CA     K G+     A R  ++ + + +   I 
Sbjct: 447 SFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALI- 505

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNV 557
             +MY+  G       I  S++ KN+
Sbjct: 506 --DMYSKGGSLVSAKVIFESIQQKNL 529



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 158/383 (41%), Gaps = 62/383 (16%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDAL 308
           GL+ D      ++    + GR     RL H   E   KD V W   +    +  + ++A+
Sbjct: 82  GLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAI 141

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            +F EM +  V  D ++ + V+ +C +  +L  G+ VH  A+ L +D   LV   L  MY
Sbjct: 142 AVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMY 201

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            +      A  V + M   +VV WN+++   A+ G   +AL L  ++ +   +P+  T+ 
Sbjct: 202 AENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWN 261

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           +VLS C           H                        GR  +    V  +     
Sbjct: 262 TVLSGC---------SRH------------------------GRDREALGVVASMLKQGL 288

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF---ELEP-INAGPYIMLSNMYAACGRWED 544
           +P++   S+LL   A  G ++HG M     F   +LEP +  G    L +MYA CGR + 
Sbjct: 289 RPDATTVSSLLKSVANTGLLRHG-MEIHCFFLRNQLEPDVYTG--TALVDMYAKCGRLDC 345

Query: 545 VASIRSSMKSKN-------VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK--- 594
              +  +++ +N       V  +A     +I  ++ + + ++R  P+       ++    
Sbjct: 346 AQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSM 405

Query: 595 ---------LIKKLQEAGFSPNT 608
                    L+++++ AG +PN 
Sbjct: 406 NGQSSQAVLLLRQIKAAGVTPNV 428


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/640 (37%), Positives = 364/640 (56%), Gaps = 76/640 (11%)

Query: 62  HNRLLHF-----YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           HN +L+F     YA  G+L  +  +F+     ++ S++A++ +H +S        LFD+ 
Sbjct: 77  HNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS-------RLFDR- 128

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                  A   +S+M     EP  +T  S L +C+    L  GK
Sbjct: 129 -----------------------AFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGK 161

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            +H + +   LG +++VR  L D+YA+GG++  AR LFD+M  R+LVS   M++ Y K G
Sbjct: 162 VLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMG 221

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
           +                                   +D A  LF  +KE+D VCW  MI 
Sbjct: 222 E-----------------------------------LDKARSLFEGMKERDVVCWNVMIG 246

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY Q+G   ++L LF  ML     P++ ++ +V+S+C +L +L  G+ +H      G+  
Sbjct: 247 GYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQI 306

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ V +ALIDMY KCG  +DA  VF+ +  ++VV+WNSMI GYA +G    AL L++++ 
Sbjct: 307 NVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMT 366

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +   KP   TF+ +LSAC H  L E G++ F  +   +GI P ++HY CM+NLLGR+  +
Sbjct: 367 ETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHL 426

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A  L+K++    + ++W TLL  C +  +IK GE  A+ L + +  N+G Y++LSNMY
Sbjct: 427 EEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMY 486

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA G WE VA +R+ MK   ++K    S IE+DNKVH+FV+ +R HP+++ IY  L+++ 
Sbjct: 487 AATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEIN 546

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
             L+  G++P T +VLHD +EE+K +S+  HSEKLA+A+ LI    G T ++I+KN+RVC
Sbjct: 547 SWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTT-VKIVKNLRVC 605

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  MK  S+I GR I++RD NRFHHF  G CSC D W
Sbjct: 606 SDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 133/230 (57%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++   L+  YA+ G +  AR LFDKMP R ++S   +L+ +++ G +   R+LF+ M  R
Sbjct: 177 YVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKER 236

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D V +N  I G+A  G   E+L++F RM   +  P + T ++ L+AC QL  L  G+ IH
Sbjct: 237 DVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIH 296

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I    +  NV V  AL DMY+K G ++ AR +FDR+ ++++V+WN MI GY  +G  +
Sbjct: 297 SYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQ 356

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
             + LF+EM   G  P ++T   IL AC   G +++    F ++++K  +
Sbjct: 357 HALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGI 406



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 92/202 (45%), Gaps = 15/202 (7%)

Query: 322 DKFS-ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           D+F  +    S   K  S+ H   +H   +  G+  + +++  L   Y   G  D +  V
Sbjct: 42  DRFQEVERFASLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFV 101

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           FN     NV S++++I+ + Q+     A   Y ++L   ++P++FTF SVL +C      
Sbjct: 102 FNTFDEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----SL 157

Query: 441 ERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           E G+  H  +I    G+   L     ++++  R  DV  A  L   +P +  SL+  T +
Sbjct: 158 ESGKVLHCQAIKL--GLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPER--SLVSLTTM 213

Query: 500 SVCAMKGDIKHGEM-AARHLFE 520
             C      K GE+  AR LFE
Sbjct: 214 LTCYS----KMGELDKARSLFE 231


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 364/645 (56%), Gaps = 41/645 (6%)

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVS---YNTAIAGFANKGFSREALQVFSRM- 147
           S+++LL A A S ++        ++  R  +S   YN  +  F + G   +AL +F  M 
Sbjct: 51  SFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEML 110

Query: 148 QKDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
                 P D +T   AL +C+++  L  G+ +    V   L  + FV ++L  MYA  G+
Sbjct: 111 HAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGD 170

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  AR +FD      +V WN +++ YLKNG   + +++F+ M  +G+  DEVT+ +++ A
Sbjct: 171 VAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTA 230

Query: 267 C----------FQTGRIDDAG-------------------------RLFHVIKEKDNVCW 291
           C          +  G +D+ G                         RLF  ++ +D V W
Sbjct: 231 CGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAW 290

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + MI GYTQ  +  +AL LF+EM    V P+  ++ SV+S+CA L +L  G+ VH     
Sbjct: 291 SAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRR 350

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +    ++ +AL+D Y KCG  DDA   F  MP +N  +W ++I G A NG+  EAL L
Sbjct: 351 KRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALEL 410

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  + +  ++P   TF+ VL AC H+ L E G+ HFDS++  +GI P ++HY CM++LLG
Sbjct: 411 FSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLG 470

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  VD+A   I+++P +PN++IW  LLS CA+  ++  GE A + +  L P ++G Y++
Sbjct: 471 RAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVL 530

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA+ G+W+D A +R  MK + ++K    S IE+D  V +F +ED  HPE   IY++
Sbjct: 531 LSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQK 590

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           + ++I +++ AG+ PNT  V  + +E EK  S+ +HSEKLA+A+ L+K   G T IR+ K
Sbjct: 591 VEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGAT-IRLSK 649

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH   K  S +  R I++RD N FHHF  G CSC D W
Sbjct: 650 NLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 187/405 (46%), Gaps = 69/405 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+R+  +++ + +Q++        +  F+ + L+H YA  G +  AR +FD      ++ 
Sbjct: 130 CSRMCALDVGRGVQAYAVKRGLVADR-FVLSSLIHMYASCGDVAAARLVFDAAEESGVVM 188

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WNA+++A+ ++G   ++  +F  M +   V+++                           
Sbjct: 189 WNAIVAAYLKNGDWMEVVEMFKGM-LEVGVAFD--------------------------- 220

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
              + T VS + AC ++ D + GK + G +    L  N  +  AL DMYAK GEI KAR 
Sbjct: 221 ---EVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARR 277

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LFD M +R++V+W+ MISGY +  Q ++ + LF EMQL  + P++VT+ ++L AC     
Sbjct: 278 LFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGA 337

Query: 268 FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVG 297
            +TG+                              IDDA   F  +  K++  WT +I G
Sbjct: 338 LETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKG 397

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV-VHGKAVVLGVDD 356
              NG+  +AL LF+ M    + P   +   V+ +C+    +  G+      A   G+  
Sbjct: 398 MATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKP 457

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYA 400
            +     ++D+  + G+ D+A+     MP   N V W ++++  A
Sbjct: 458 RVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCA 502



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 122/263 (46%), Gaps = 32/263 (12%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G A  E     +V  C R+ D +L K +  H+D      N   +   L+  YAK G++  
Sbjct: 216 GVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLV-TALMDMYAKCGEIGK 274

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR LFD M  RD+++W+A++S                               G+      
Sbjct: 275 ARRLFDGMQSRDVVAWSAMIS-------------------------------GYTQADQC 303

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           REAL +FS MQ  R EP D T VS L+ACA L  L  GK +H  +    L     +  AL
Sbjct: 304 REALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTAL 363

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            D YAK G ID A   F+ M  +N  +W  +I G   NG+ ++ ++LF  M+  G+ P +
Sbjct: 364 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTD 423

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           VT   +L AC  +  +++  R F
Sbjct: 424 VTFIGVLMACSHSCLVEEGRRHF 446


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/640 (36%), Positives = 365/640 (57%), Gaps = 8/640 (1%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRD 120
           L   YA++  +  A  + D M    ++ WNA+++  AR G V D   L  +M    P  +
Sbjct: 197 LAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPN 256

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++NT ++G +  G  REAL V + M K    P   T  S L + A    LR G +IH 
Sbjct: 257 VATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHC 316

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +   L  +V+   AL DMYAK G +D A+ + D + +RNL +WN +++GY   G+   
Sbjct: 317 FFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDI 376

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIV 296
            ++L + M+   L+PD  T + ++      G+   A  L   IK      + V WT++I 
Sbjct: 377 ALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSWTSLIS 436

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G   NG+ ED+    +EM  + V+P   ++S ++ +CA LA    G+ +H  A+    D 
Sbjct: 437 GSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDC 496

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D++VS+ALIDMY K G    A  +F  +  +N+V  N+M+ G A +GQ  EA+ L+  + 
Sbjct: 497 DMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIELFHDMW 556

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              LKPDS TF ++L+AC    L   G  +FDS+   +G+ P+ ++YACM++LL R   +
Sbjct: 557 NSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLARCGYL 616

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           D+A+D I+  P  P +  W  LL+ C++ G++   E+AAR+LF LEP N+  Y+++ N+Y
Sbjct: 617 DEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLLMMNLY 676

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
                +++  S++ +MK++ V     +SWI+I+  +H F  + + HPET  IYEEL +L+
Sbjct: 677 EYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEELIRLV 736

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            ++++AG+ P+T  + ++ QEEEK K +  H+EKLA+ Y LI+      P+R+MKN R+C
Sbjct: 737 FQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMKNTRMC 796

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   K  S +  R IILRD+ RFHHFV G CSC D W
Sbjct: 797 NDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 109/446 (24%), Positives = 195/446 (43%), Gaps = 42/446 (9%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D+V +N  +A  A      EA+ VF  MQ        YT    L+AC +   LR G+ +
Sbjct: 119 KDAVLWNKHVAMLAEAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAV 178

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +  V   L  MYA+  ++  A  + D M   ++V WN +++   + G  
Sbjct: 179 HAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLV 238

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
              ++L   M   G  P+  T                               W T++ G 
Sbjct: 239 DDALELAARMSRSGPEPNVAT-------------------------------WNTVLSGC 267

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +++G++ +AL +   ML + +RPD  ++SS++ S A    L HG  +H   +   ++ D+
Sbjct: 268 SRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDV 327

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              +AL+DMY KCG  D A  V + +  RN+ +WNS++ GYA  G+   AL L + + + 
Sbjct: 328 YTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKN 387

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L PD  T+  +++         +       I A  G+TP++  +  +I+    + + + 
Sbjct: 388 RLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAA-GVTPNVVSWTSLISGSCHNGEYED 446

Query: 479 AVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIM 531
           +      +     +P+ +  S LL  CA     K G+     A R  ++ + + +   I 
Sbjct: 447 SFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALI- 505

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNV 557
             +MY+  G       I  S++ KN+
Sbjct: 506 --DMYSKGGSLVSAKVIFESIQQKNL 529



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 158/383 (41%), Gaps = 62/383 (16%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDAL 308
           GL+ D      ++    + GR     RL H   E   KD V W   +    +  + ++A+
Sbjct: 82  GLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAI 141

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            +F EM +  V  D ++ + V+ +C +  +L  G+ VH  A+ L +D   LV   L  MY
Sbjct: 142 AVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMY 201

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            +      A  V + M   +VV WN+++   A+ G   +AL L  ++ +   +P+  T+ 
Sbjct: 202 AENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWN 261

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           +VLS C           H                        GR  +    V  +     
Sbjct: 262 TVLSGC---------SRH------------------------GRDREALGVVASMLKQGL 288

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF---ELEP-INAGPYIMLSNMYAACGRWED 544
           +P++   S+LL   A  G ++HG M     F   +LEP +  G    L +MYA CGR + 
Sbjct: 289 RPDATTVSSLLKSVANTGLLRHG-MEIHCFFLRNQLEPDVYTG--TALVDMYAKCGRLDC 345

Query: 545 VASIRSSMKSKN-------VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK--- 594
              +  +++ +N       V  +A     +I  ++ + + ++R  P+       ++    
Sbjct: 346 AQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSM 405

Query: 595 ---------LIKKLQEAGFSPNT 608
                    L+++++ AG +PN 
Sbjct: 406 NGQSSQAVLLLRQIKAAGVTPNV 428


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/642 (36%), Positives = 372/642 (57%), Gaps = 46/642 (7%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS-VQDLRALFDK 115
           +  F  N+++    +SG +  A  +F  M  ++ I+WN+LL   ++  S + +   LFD+
Sbjct: 59  DQIFPLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISKDPSRMMEAHQLFDE 118

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           +P  D+ SYN  ++ +       +A   F RM         +   ++ N           
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRM--------PFKDAASWNT---------- 160

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                 ++ G               YA+ GE++KAR LF  M  +N VSWN MISGY++ 
Sbjct: 161 ------MITG---------------YARRGEMEKARELFYSMMEKNEVSWNAMISGYIEC 199

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH-VIKEKDNVCWTTM 294
           G  +K    F+   + G+    V  + ++    +  +++ A  +F  +   K+ V W  M
Sbjct: 200 GDLEKASHFFKVAPVRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I GY +N + ED L LF  ML E +RP+   +SS +  C++L++L  G+ +H       +
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
            +D+   ++LI MYCKCG   DAW +F +M  ++VV+WN+MI+GYAQ+G   +AL L+ +
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFRE 375

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++   ++PD  TFV+VL AC HA L   G  +F+S+   + + P  DHY CM++LLGR+ 
Sbjct: 376 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAG 435

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A+ LI+S+P +P++ ++ TLL  C +  +++  E AA  L +L   NA  Y+ L+N
Sbjct: 436 KLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLAN 495

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA+  RWEDVA +R  MK  NV K   YSWIEI NKVH F S DR HPE + I+++L +
Sbjct: 496 IYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKE 555

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L KK++ AG+ P  +  LH+ +EE+K K + +HSEKLA+A+  IK P G + I++ KN+R
Sbjct: 556 LEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG-SQIQVFKNLR 614

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +CGDCH  +KF S+I  R II+RD+ RFHHF  G+CSC D W
Sbjct: 615 ICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/435 (27%), Positives = 202/435 (46%), Gaps = 60/435 (13%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           +++  C R  D++ A R+   M       NT   ++ L+       ++  A  LFD++P 
Sbjct: 66  KIIARCVRSGDIDGALRVFHGMRAK----NTITWNSLLIGISKDPSRMMEAHQLFDEIPE 121

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            D  S+N +LS + R+ + +  ++ FD+MP +D+ S+NT I G+A +G   +A ++F  M
Sbjct: 122 PDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSM 181

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                E  + +  + ++   +  DL +         V  + G V    A+   Y K  ++
Sbjct: 182 ----MEKNEVSWNAMISGYIECGDLEKASHF---FKVAPVRG-VVAWTAMITGYMKAKKV 233

Query: 208 DKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + A  +F  M  N+NLV+WN MISGY++N +P+  + LF+ M   G+ P+   +S+ L  
Sbjct: 234 ELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLG 293

Query: 267 C-----FQTGR------------------------------IDDAGRLFHVIKEKDNVCW 291
           C      Q GR                              + DA +LF V+K+KD V W
Sbjct: 294 CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAW 353

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI GY Q+G  + AL LF EM+   +RPD  +  +V+ +C      + G V  G A  
Sbjct: 354 NAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN-----HAGLVNIGMAYF 408

Query: 352 LGVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
             +  D  V       + ++D+  + G  ++A  +   MP R   +    + G  +  ++
Sbjct: 409 ESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKN 468

Query: 406 LE-ALALYDKLLQEN 419
           +E A    +KLLQ N
Sbjct: 469 VELAEFAAEKLLQLN 483



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
            +   G        +  +L C+ ++ ++L +++   +  +    + T L   L+  Y K 
Sbjct: 274 AMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTAL-TSLISMYCKC 332

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTAI 128
           G+L  A  LF+ M  +D+++WNA++S +A+ G+      LF +M    IR D +++   +
Sbjct: 333 GELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVL 392

Query: 129 AGFANKGFSREALQVFSRMQKD-RFEP 154
               + G     +  F  M +D + EP
Sbjct: 393 LACNHAGLVNIGMAYFESMVRDYKVEP 419


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 356/636 (55%), Gaps = 47/636 (7%)

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           S ++   +FDKM   + V++   I      GF REA++ F  M    FE   +T  S  +
Sbjct: 218 SFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFS 277

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRN 221
           ACA+L +L  GKQ+H   +   L  +V    +L DMYAK    G +D  R +FDRM + +
Sbjct: 278 ACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHS 335

Query: 222 LVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLG-LNPDEVTVSN----------------I 263
           ++SW  +I+GY+KN     + I+LF EM   G + P+  T S+                +
Sbjct: 336 VMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV 395

Query: 264 LGACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           LG  F+ G                   R++DA R F  + EK+ V + T + G  +N   
Sbjct: 396 LGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNF 455

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E A  L +E+   ++    F+ +S++S  A + S+  G+ +H + V LG+  +  V +AL
Sbjct: 456 EQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNAL 515

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I MY KCG  D A  VFN M  RNV+SW SMI G+A++G  +  L  ++++++E +KP+ 
Sbjct: 516 ISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNE 575

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            T+V++LSAC H  L   G  HF+S+   H I P ++HYACM++LL R+  +  A + I 
Sbjct: 576 VTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFIN 635

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
           ++P + + L+W T L  C +  + + G++AAR + EL+P     YI LSN+YA  G+WE+
Sbjct: 636 TMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEE 695

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
              +R  MK +N+ K    SWIE+ +K+HKF   D  HP    IY+EL +LI +++  G+
Sbjct: 696 STEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGY 755

Query: 605 SPNTKLVLHD----TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
            P+T LVLH       E EK + +  HSEK+A+A+ LI       P+R+ KN+RVCGDCH
Sbjct: 756 VPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS-RPVRVFKNLRVCGDCH 814

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             MK+ S + GR I+LRD NRFHHF  G CSC D W
Sbjct: 815 NAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/530 (23%), Positives = 245/530 (46%), Gaps = 82/530 (15%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
            ++ L+  C R  D  L K + + +     EP++  L+N L+  Y+KSG    A D+F+ 
Sbjct: 64  TFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSV-LYNSLISLYSKSGDSAKAEDVFET 122

Query: 85  MPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           M     RD++SW+A++                               A + N G   +A+
Sbjct: 123 MRRFGKRDVVSWSAMM-------------------------------ACYGNNGRELDAI 151

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDM 200
           +VF    +    P DY + + + AC+    +  G+   G ++  G+   +V V  +L DM
Sbjct: 152 KVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDM 211

Query: 201 YAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           + KG    + A  +FD+M+  N+V+W LMI+  ++ G P++ I  F +M L G   D+ T
Sbjct: 212 FVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFT 271

Query: 260 VSNILGACFQT------------------------------------GRIDDAGRLFHVI 283
           +S++  AC +                                     G +DD  ++F  +
Sbjct: 272 LSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRM 331

Query: 284 KEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYH 341
           ++   + WT +I GY +N     +A+ LF+EM+++  V P+ F+ SS   +C  L+    
Sbjct: 332 EDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRV 391

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ V G+A   G+  +  V++++I M+ K    +DA   F  +  +N+VS+N+ ++G  +
Sbjct: 392 GKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           N    +A  L  ++ +  L   +FTF S+LS   +     +G+     +  + G++ +  
Sbjct: 452 NLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL-GLSCNQP 510

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
               +I++  +   +D A  +   + ++ N + W+++++     G  KHG
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENR-NVISWTSMIT-----GFAKHG 554



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 176/376 (46%), Gaps = 50/376 (13%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGF-ANKGFSREALQVFSRM-QKDRFEPTDYTHVS 161
           GSV D R +FD+M     +S+   I G+  N   + EA+ +FS M  +   EP  +T  S
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           A  AC  L D R GKQ+ G+     L  N  V N++  M+ K   ++ A+  F+ ++ +N
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438

Query: 222 LVSWNLMISGYLKN-----------------------------------GQPKKCIDLFQ 246
           LVS+N  + G  +N                                   G  +K   +  
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
           ++  LGL+ ++   + ++    + G ID A R+F+ ++ ++ + WT+MI G+ ++G    
Sbjct: 499 QVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIR 558

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS----- 361
            L  FN+M+ E V+P++ +  +++S+C+ +     G V  G      + +D  +      
Sbjct: 559 VLETFNQMIEEGVKPNEVTYVAILSACSHV-----GLVSEGWRHFNSMYEDHKIKPKMEH 613

Query: 362 -SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALALYDKLLQE 418
            + ++D+ C+ G+  DA+   N MP + +V+ W + +      +  +L  LA    L  +
Sbjct: 614 YACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELD 673

Query: 419 NLKPDSFTFVSVLSAC 434
             +P ++  +S + AC
Sbjct: 674 PNEPAAYIQLSNIYAC 689



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/192 (32%), Positives = 107/192 (55%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+++S   +S  ++D +  F+ +  ++ VSYNT + G        +A ++ S + +    
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            + +T  S L+  A +  +R+G+QIH ++V   L  N  V NAL  MY+K G ID A  +
Sbjct: 472 VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRV 531

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ M NRN++SW  MI+G+ K+G   + ++ F +M   G+ P+EVT   IL AC   G +
Sbjct: 532 FNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLV 591

Query: 274 DDAGRLFHVIKE 285
            +  R F+ + E
Sbjct: 592 SEGWRHFNSMYE 603



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 206/499 (41%), Gaps = 94/499 (18%)

Query: 115 KMPIRD--SVSYNTAIAG-----FANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNAC 166
           K+PI+   SVS    +A        N G  R A+     M +D   P D  T  S L +C
Sbjct: 13  KLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSC 72

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
            +  D R GK +H +++  ++                  E D              V +N
Sbjct: 73  IRARDFRLGKLVHARLIEFDI------------------EPDS-------------VLYN 101

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
            +IS Y K+G   K  D+F+ M+  G                                ++
Sbjct: 102 SLISLYSKSGDSAKAEDVFETMRRFG--------------------------------KR 129

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W+ M+  Y  NG+E DA+ +F E L   + P+ +  ++V+ +C+    +  G+V  
Sbjct: 130 DVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTL 189

Query: 347 GKAVVLG-VDDDLLVSSALIDMYCKCGVT-DDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           G  +  G  + D+ V  +LIDM+ K   + ++A+ VF+ M   NVV+W  MI    Q G 
Sbjct: 190 GFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGF 249

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EA+  +  ++    + D FT  SV SAC   +    G+    S +   G+   +D   
Sbjct: 250 PREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGK-QLHSWAIRSGL---VDDVE 305

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNS---LIWSTLLSVCAMKGDIKHGEMA--ARHLF 519
           C +  +      D +VD  + +  +      + W+ L++     G +K+  +A  A +LF
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALIT-----GYMKNCNLATEAINLF 360

Query: 520 ELEPINAG----PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
             E I  G     +   S+ + ACG   D    +  +     +  A+ S +  ++ +  F
Sbjct: 361 S-EMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA-NSVISMF 418

Query: 576 VSEDRTHPETEIIYEELSK 594
           V  DR   + +  +E LS+
Sbjct: 419 VKSDRME-DAQRAFESLSE 436



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 31/107 (28%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y+K G +  A  +F+ M  R++ISW ++                          
Sbjct: 513 NALISMYSKCGSIDTASRVFNFMENRNVISWTSM-------------------------- 546

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
                I GFA  GF+   L+ F++M ++  +P + T+V+ L+AC+ +
Sbjct: 547 -----ITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHV 588


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/636 (36%), Positives = 371/636 (58%), Gaps = 48/636 (7%)

Query: 107 QDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           Q+L  LF++   + D  S+N+ IA  A  G S EAL+ FS M+K    PT  +   A+ A
Sbjct: 26  QNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           C+ LLD+  GKQ H +  V     ++FV +AL  MY+  G+++ AR +FD +  RN+VSW
Sbjct: 86  CSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------VSNILGACFQT-------- 270
             MI GY  NG     + LF+++ L+  N D+ T       + +++ AC +         
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDL-LIEENDDDATMFLDSMGMVSVISACSRVAAKGLTES 204

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +  A ++F  I +KD V + +++  Y Q+
Sbjct: 205 IHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQS 264

Query: 302 GKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G   +A  +F  ++ E V   +  ++S+V+ + +   +L  G+ +H + + +G++DD++V
Sbjct: 265 GMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIV 324

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +++IDMYCKCG  + A   F+ M  +NV SW +MI GY  +G   +AL L+  ++   +
Sbjct: 325 GTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  TFVSVL+AC HA L + G + F+++    G+ P L+HY CM++LLGR+  + KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +  +P+S+IWS+LL+ C +  +++  E++   LFEL+P N G Y++LS++YA  G
Sbjct: 445 DLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSG 504

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DV  +R +MK++ + K   +S +E++ +VH F+  D  HP+ E IYE L++L +KL 
Sbjct: 505 RWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLL 564

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAG+  NT  V HD  EEEK  ++  HSEKLA+A+ ++    G T + ++KN+RVC DCH
Sbjct: 565 EAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGST-VNVVKNLRVCSDCH 623

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I+ R  ++RD+ RFHHF  G CSC D W
Sbjct: 624 NVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 190/456 (41%), Gaps = 107/456 (23%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T  ++   +  C+ + D+   K+      +  Y+ +  F+ + L+  Y+  GKL  AR +
Sbjct: 75  TRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDI-FVSSALIVMYSTCGKLEDARKV 133

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD++P R+I+SW +++  +  +G+  D  +LF  + I ++                 +A 
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEEN---------------DDDAT 178

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
                M            VS ++AC+++      + IH  ++       V V N L D Y
Sbjct: 179 MFLDSMGM----------VSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAY 228

Query: 202 AKGGE--IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ------------- 246
           AKGGE  +  AR +FD++ +++ VS+N ++S Y ++G   +  D+F+             
Sbjct: 229 AKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCI 288

Query: 247 -----------------------EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
                                  ++  +GL  D +  ++I+    + GR++ A   F  +
Sbjct: 289 TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRM 348

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           K K+   WT MI GY  +G    AL LF  M+   VRP+  +  SV+++C+         
Sbjct: 349 KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS--------- 399

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMING 398
                                       G+ D  W  FN M  R  V      +  M++ 
Sbjct: 400 --------------------------HAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             + G   +A   YD + +  ++PDS  + S+L+AC
Sbjct: 434 LGRAGFLQKA---YDLIQKMKMEPDSIIWSSLLAAC 466


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 362/640 (56%), Gaps = 45/640 (7%)

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SWN         G +   R +FD+ P      +N  I G+++  F  +A++++SRMQ   
Sbjct: 113 SWNI--------GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASG 164

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P  +T    L AC+ +  L  GK++HG+I       +VFV+N L  +YAK G +++AR
Sbjct: 165 VNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQAR 224

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA----- 266
            +F+ +++RN+VSW  MISGY +NG P + + +F +M+   + PD + + ++L A     
Sbjct: 225 IVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVE 284

Query: 267 ----------CF--------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                     C                     + G++  A   F  ++  + + W  MI 
Sbjct: 285 DLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMIS 344

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY +NG   +A+ LF EM+S+++R D  ++ S + +CA++ SL   + +          +
Sbjct: 345 GYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRN 404

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D+ V++ALIDM+ KCG  D A  VF+    ++VV W++MI GY  +G+  +A+ L+  + 
Sbjct: 405 DVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMK 464

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           Q  + P+  TFV +L+AC H+ L E G   F S+   +GI     HYAC+++LLGRS  +
Sbjct: 465 QAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGIEARHQHYACVVDLLGRSGHL 523

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A D I ++P +P   +W  LL  C +   +  GE AA  LF L+P N G Y+ LSN+Y
Sbjct: 524 NEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLY 583

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A+   W+ VA +R  M+ K + K   YS IEI+ K+  F   D++HP  + I+EEL  L 
Sbjct: 584 ASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLE 643

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           ++L+EAGF P+ + VLHD  +EEK +++C HSE+LA+AY LI    G T +RI KN+R C
Sbjct: 644 RRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTT-LRITKNLRAC 702

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +CH   K  S ++ R I++RD+NRFHHF  G CSC+D W
Sbjct: 703 INCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 179/371 (48%), Gaps = 41/371 (11%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R   QIH ++VV  L  + F+     +     GEI  AR +FD     ++  WN +I GY
Sbjct: 85  RHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGY 144

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQT-- 270
             +      I+++  MQ  G+NPD  T+  +L AC                    F++  
Sbjct: 145 SSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDV 204

Query: 271 -------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                        GR++ A  +F  + +++ V WT+MI GY QNG   +AL +F +M   
Sbjct: 205 FVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQR 264

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTD 375
           +V+PD  ++ SV+ +   +  L  G+ +HG  V +G+  + DLL+S  L  MY KCG   
Sbjct: 265 NVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLIS--LTAMYAKCGQVM 322

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A + F+ M   NV+ WN+MI+GYA+NG   EA+ L+ +++ +N++ DS T  S + AC 
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
                +  +   D I+          + A +I++  +   VD A ++      K + ++W
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTA-LIDMFAKCGSVDLAREVFDRTLDK-DVVVW 440

Query: 496 STLLSVCAMKG 506
           S ++    + G
Sbjct: 441 SAMIVGYGLHG 451



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 44/316 (13%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
           ++ + GL      V+  + A +  G I  A ++F    E     W  +I GY+ +    D
Sbjct: 93  QLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGD 152

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           A+ +++ M +  V PD F++  V+ +C+ +  L  G+ VHG+   LG + D+ V + L+ 
Sbjct: 153 AIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVA 212

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y KCG  + A  VF  +  RN+VSW SMI+GY QNG  +EAL ++ ++ Q N+KPD   
Sbjct: 213 LYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIA 272

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
            VSVL A    +  E+G+       ++HG         C++ +                L
Sbjct: 273 LVSVLRAYTDVEDLEQGK-------SIHG---------CVVKM---------------GL 301

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM----YAACGRW 542
             +P+ LI  +L ++ A  G +    M AR  F+   I   P +M+ N     YA  G  
Sbjct: 302 EFEPDLLI--SLTAMYAKCGQV----MVARSFFDQMEI---PNVMMWNAMISGYAKNGYT 352

Query: 543 EDVASIRSSMKSKNVK 558
            +   +   M SKN++
Sbjct: 353 NEAVGLFQEMISKNIR 368



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 5/123 (4%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           +L C +V  ++LAK +  +++   Y  N  F++  L+  +AK G +  AR++FD+   +D
Sbjct: 378 ILACAQVGSLDLAKWMGDYINKTEYR-NDVFVNTALIDMFAKCGSVDLAREVFDRTLDKD 436

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
           ++ W+A++  +   G  QD   LF  M       + V++   +    + G   E  ++F 
Sbjct: 437 VVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFH 496

Query: 146 RMQ 148
            M+
Sbjct: 497 SMK 499


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/726 (34%), Positives = 378/726 (52%), Gaps = 105/726 (14%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           LRQ    ++S GQ  ++     ++  C+ ++ +   K +  +      E N  F+   L+
Sbjct: 119 LRQ-FSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANI-FVATGLV 176

Query: 67  HFYAKSGKLFYARDLFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
             Y+K   L  A  LF  +P R + + W A+L+                           
Sbjct: 177 DMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLT--------------------------- 209

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
               G+A  G S +A+Q F  M+    E   +T  S L AC  +     G+Q+HG I+  
Sbjct: 210 ----GYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWS 265

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G NV+V++AL DMYAK G++  AR + D M   ++V WN MI G + +G  ++ + LF
Sbjct: 266 GFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLF 325

Query: 246 QEMQLLGLNPDEVTVSNILG------------------------AC-----------FQT 270
            +M    +  D+ T  ++L                         AC            + 
Sbjct: 326 HKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQ 385

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +  A  +F+ I +KD + WT+++ GY  NG  E AL LF +M +  V  D+F ++ V 
Sbjct: 386 GNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVF 445

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+CA+L  +  G+ VH   +       L   ++LI MY KCG  +DA  V + M TRNV+
Sbjct: 446 SACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVI 505

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW ++I GYAQNG                                   L E GQ++F+S+
Sbjct: 506 SWTAIIVGYAQNG-----------------------------------LVETGQSYFESM 530

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
             V+GI P+ D YACMI+LLGR+  +++A  L+  +  +P++ IW +LLS C + G+++ 
Sbjct: 531 EKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLEL 590

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE A ++L +LEP N+ PY++LSNM++  GRWED A IR +MK+  + +   YSWIE+ +
Sbjct: 591 GERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKS 650

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           +VH F+SEDR+HP    IY ++ +++  ++EAG  P+    L D  EE K +S+ YHSEK
Sbjct: 651 QVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEK 710

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ L+    G  PIRI KN+RVCGDCH  MK+ S I  R IILRD N FHHF+ G C
Sbjct: 711 LAVAFGLLTVAKG-APIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKC 769

Query: 691 SCKDNW 696
           SC D W
Sbjct: 770 SCGDFW 775



 Score =  252 bits (643), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 155/487 (31%), Positives = 252/487 (51%), Gaps = 40/487 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+LL   +K+G++  AR LFD+MP RD  +WN ++SA+A  G++ + R LF++ PI +S+
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSI 100

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++++ ++G+   G   E L+ FS+M  D  +P+ YT  S L AC+ L  L  GK IH   
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKC 241
           +   L  N+FV   L DMY+K   + +A +LF  + +R N V W  M++GY +NG+  K 
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           I  F+EM+  G+  +  T  +IL AC                                  
Sbjct: 221 IQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDM 280

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G +  A  +   ++  D VCW +MIVG   +G  E+AL+LF++M + D+R D F+ 
Sbjct: 281 YAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTY 340

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            SV+ S A   +L  G+ VH   +  G D    VS+AL+DMY K G    A  VFN +  
Sbjct: 341 PSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILD 400

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QN 445
           ++V+SW S++ GY  NG   +AL L+  +    +  D F    V SAC    + E G Q 
Sbjct: 401 KDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQV 460

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           H + I +  G   S ++   +I +  +   ++ A+ +  S+  + N + W+ ++   A  
Sbjct: 461 HANFIKSSAGSLLSAEN--SLITMYAKCGCLEDAIRVXDSMETR-NVISWTAIIVGYAQN 517

Query: 506 GDIKHGE 512
           G ++ G+
Sbjct: 518 GLVETGQ 524



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 147/344 (42%), Gaps = 67/344 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           K  Q    + ++G  +    +  ++  CT ++     +++   +  + + PN  ++ + L
Sbjct: 219 KAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV-YVQSAL 277

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  YAK G L  AR + D M + D++ WN+++      G +++   LF KM  RD     
Sbjct: 278 VDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRD----- 332

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                                         D+T+ S L + A   +L+ G+ +H   +  
Sbjct: 333 --------------------------IRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKT 366

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
                  V NAL DMYAK G +  A  +F+++ +++++SW  +++GY+ NG  +K + LF
Sbjct: 367 GFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLF 426

Query: 246 QEMQLLGLNPDEVTVSNILGACFQ-----------------------------------T 270
            +M+   ++ D+  V+ +  AC +                                    
Sbjct: 427 CDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKC 486

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
           G ++DA R+   ++ ++ + WT +IVGY QNG  E     F  M
Sbjct: 487 GCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSYFESM 530



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 77/181 (42%), Gaps = 34/181 (18%)

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI---------------------- 396
           L S+ L+    K G  D+A  +F+ MP R+  +WN MI                      
Sbjct: 38  LDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIX 97

Query: 397 ---------NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-H 446
                    +GY +NG ++E L  + ++  +  KP  +T  SVL AC    L   G+  H
Sbjct: 98  NSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIH 157

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +I     +  ++     ++++  +   + +A  L  SLP + N + W+ +L+  A  G
Sbjct: 158 CYAIKI--QLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215

Query: 507 D 507
           +
Sbjct: 216 E 216


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/663 (35%), Positives = 374/663 (56%), Gaps = 68/663 (10%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           TR   ++  K L +H   + ++ N  F+    +H ++    +  AR +FD     ++++W
Sbjct: 118 TRNMALQYGKVLLNHAVKHGFDSNL-FVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTW 176

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N +LS + R                               K F +  + +F  M+K    
Sbjct: 177 NIMLSGYNRV------------------------------KQFKKSKM-LFIEMEKRGVS 205

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T V  L+AC++L DL  GK I+  I  G +  N+ + N L DM+A  GE+D+A+ +
Sbjct: 206 PNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSV 265

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M NR+++SW  +++G+                            +NI       G+I
Sbjct: 266 FDNMKNRDVISWTSIVTGF----------------------------ANI-------GQI 290

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A + F  I E+D V WT MI GY +  +  +AL LF EM   +V+PD+F++ S++++C
Sbjct: 291 DLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTAC 350

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L +L  G+ V        + +D  V +ALIDMY KCG    A  VF  M  ++  +W 
Sbjct: 351 AHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWT 410

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G A NG   EALA++  +++ ++ PD  T++ VL AC HA + E+GQ+ F S++  
Sbjct: 411 AMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQ 470

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI P++ HY CM++LLGR+  +++A ++I ++P KPNS++W +LL  C +  +++  EM
Sbjct: 471 HGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEM 530

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA+ + ELEP N   Y++L N+YAAC RWE++  +R  M  + +KK    S +E++  V+
Sbjct: 531 AAKQILELEPENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVY 590

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +FV+ D++HP+++ IY +L  +++ L +AG+SP+T  V  D  EE+K  ++  HSEKLA+
Sbjct: 591 EFVAGDQSHPQSKEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAI 650

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           AY LI    G+T IRI+KN+R+C DCH   K  S+   R +I+RD  RFHHF  G+CSC 
Sbjct: 651 AYALISSGPGIT-IRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCN 709

Query: 694 DNW 696
           + W
Sbjct: 710 NFW 712



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           RG +        ++  C+++ D+E  K +  +++    E N   L N L+  +A  G++ 
Sbjct: 202 RGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNL-ILENVLIDMFAACGEMD 260

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A+ +FD M  RD+ISW ++++  A  G +   R  FD++P RD VS+   I G+     
Sbjct: 261 EAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNR 320

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             EAL +F  MQ    +P ++T VS L ACA L  L  G+ +   I   ++  + FV NA
Sbjct: 321 FIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNA 380

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY K G + KA+ +F  M++++  +W  MI G   NG  ++ + +F  M    + PD
Sbjct: 381 LIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPD 440

Query: 257 EVTVSNILGACFQTGRIDDAGRLF------HVIKEKDNVC-WTTMIVGYTQNGKEEDALI 309
           E+T   +L AC   G ++     F      H I  K NV  +  M+    + G+ E+A  
Sbjct: 441 EITYIGVLCACTHAGMVEKGQSFFISMTMQHGI--KPNVTHYGCMVDLLGRAGRLEEAHE 498

Query: 310 LFNEMLSEDVRPDKFSISSVVSSC-----AKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           +   M    V+P+     S++ +C      +LA +   Q++  +       ++  V   L
Sbjct: 499 VIVNM---PVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEP------ENGAVYVLL 549

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNV 389
            ++Y  C   ++   V  +M  R +
Sbjct: 550 CNIYAACKRWENLRQVRKLMMERGI 574



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 169/329 (51%), Gaps = 15/329 (4%)

Query: 239 KKCIDLFQEMQL------LGLNPDEVTVSNILGAC--FQTGRIDDAGRLFHVIKEKDNVC 290
           +KC  ++Q  Q+      +GL+ D +    ++  C   ++G++  A ++F  I +     
Sbjct: 15  EKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFI 74

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W TMI GY++    ++ + ++  ML+ +++PD+F+   ++    +  +L +G+V+   AV
Sbjct: 75  WNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAV 134

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G D +L V  A I M+  C + D A  VF+M     VV+WN M++GY +  Q  ++  
Sbjct: 135 KHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKM 194

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINL 469
           L+ ++ +  + P+S T V +LSAC      E G++ +  I+   GI   +L     +I++
Sbjct: 195 LFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYING--GIVERNLILENVLIDM 252

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
                ++D+A  +  ++ ++ + + W+++++  A  G I   ++A ++  ++   +   +
Sbjct: 253 FAACGEMDEAQSVFDNMKNR-DVISWTSIVTGFANIGQI---DLARKYFDQIPERDYVSW 308

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVK 558
             + + Y    R+ +  ++   M+  NVK
Sbjct: 309 TAMIDGYLRMNRFIEALALFREMQMSNVK 337



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 53/283 (18%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC--KCGVTDDAWTVFNMMP 385
           S +S   K  S+Y  + +H   + +G+  D L    +I   C  + G    A  VF+ +P
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIP 68

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ- 444
              +  WN+MI GY++       +++Y  +L  N+KPD FTF  +L         + G+ 
Sbjct: 69  QPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKV 128

Query: 445 --NH-----FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-------------- 483
             NH     FDS   V      +     +++L  +  D+  A +++              
Sbjct: 129 LLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQ 188

Query: 484 -----------KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY--- 529
                      +     PNS+    +LS C+   D++ G    +H+++   IN G     
Sbjct: 189 FKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGG----KHIYKY--INGGIVERN 242

Query: 530 IMLSN----MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           ++L N    M+AACG  ++  S+  +MK+++V      SW  I
Sbjct: 243 LILENVLIDMFAACGEMDEAQSVFDNMKNRDV-----ISWTSI 280


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 254/769 (33%), Positives = 397/769 (51%), Gaps = 111/769 (14%)

Query: 23  EEA---YTQLVLD-CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           EEA   + Q+VL  CT+V   E  K+L   + L     + T++ N L+  Y++SG L  A
Sbjct: 247 EEAMLLFCQIVLSACTKVEFFEFGKQLHG-LVLKQGFSSETYVCNALVTLYSRSGNLSSA 305

Query: 79  RDLFDKMPLRDIISWNAL-----------------------------------LSAHARS 103
             +F  M  RD +S+N+L                                   LSA A  
Sbjct: 306 EQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASV 365

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAG---------------------FANKGFSREALQ 142
           G++ + +  F    I+  ++ +  + G                     +       ++ Q
Sbjct: 366 GALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQ 424

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F++MQ +   P  +T+ S L  C  L     G+QIH +++      NV+V + L DMYA
Sbjct: 425 IFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYA 484

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G++D A  +F R+   ++VSW  MI+GY ++ +  + ++LF+EMQ  G+  D +  ++
Sbjct: 485 KHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFAS 544

Query: 263 ILGACF-----------------------------------QTGRIDDAGRLFHVIKEKD 287
            + AC                                    + G++ +A   F  I  KD
Sbjct: 545 AISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKD 604

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           NV W +++ G+ Q+G  E+AL +F +M    +  + F+  S VS+ A +A++  G+ +HG
Sbjct: 605 NVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHG 664

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
                G D +  VS+ALI +Y KCG  DD             +SWNSMI GY+Q+G   E
Sbjct: 665 MIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQHGCGFE 711

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           AL L++ + Q ++ P+  TFV VLSAC H  L + G ++F S+S  H + P  +HYAC++
Sbjct: 712 ALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVV 771

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGRS  + +A   ++ +P +P++++W TLLS C +  +I  GE AA HL ELEP ++ 
Sbjct: 772 DLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSA 831

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y+++SNMYA  G+W+     R  MK + VKK    SW+E+DN VH F + D+ HP  ++
Sbjct: 832 TYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADM 891

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IYE L  L  +  E G+ P    +L D +  +K  +   HSE+LA+A+ L+      TP+
Sbjct: 892 IYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSS-TPL 950

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + KN+RVC DCH ++K  S I  R II+RDS RFHHF  G+CSCKD W
Sbjct: 951 YVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 38/434 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  + ++G +   + +F+ +  RDSVS+   I+G +  G+  EA+ +F ++      
Sbjct: 203 NPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQI------ 256

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                    L+AC ++     GKQ+HG ++        +V NAL  +Y++ G +  A  +
Sbjct: 257 --------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQI 308

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M+ R+ VS+N +ISG  + G   + + LF++M L    PD VTV+++L AC   G +
Sbjct: 309 FHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGAL 368

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVG---------------------YTQNGKEEDALILFN 312
            + G+ FH    K  +    ++ G                     Y Q      +  +F 
Sbjct: 369 PN-GKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFT 427

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +M  E + P++F+  S++ +C  L +   G+ +H + +  G   ++ VSS LIDMY K G
Sbjct: 428 QMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHG 487

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             D A  +F  +   +VVSW +MI GY Q+ +  EAL L+ ++  + +K D+  F S +S
Sbjct: 488 KLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAIS 547

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC      ++G+    + S + G +  L     +++L  R   V +A      +  K N 
Sbjct: 548 ACAGIQALDQGR-QIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN- 605

Query: 493 LIWSTLLSVCAMKG 506
           + W++L+S  A  G
Sbjct: 606 VSWNSLVSGFAQSG 619



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 188/412 (45%), Gaps = 41/412 (9%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA-QLL 170
           +FD+MPIR    +N     F  +        +F RM     E  +      L  C+   +
Sbjct: 119 VFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCSGNAV 178

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
             R  +QIH K +      + F+ N L D+Y K G +  A+ +F+ +  R+ VSW  MIS
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 231 GYLKNGQPKKCIDLFQEM---------------QLLGL-----NPDEVTVSNILGACF-Q 269
           G  +NG  ++ + LF ++               QL GL        E  V N L   + +
Sbjct: 239 GLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSR 298

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
           +G +  A ++FH + ++D V + ++I G  Q G    AL LF +M  +  +PD  +++S+
Sbjct: 299 SGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASL 358

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +S+CA + +L +G+  H  A+  G+  D++V  +L+D+Y KC     A   F        
Sbjct: 359 LSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLC------ 412

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
                    Y Q     ++  ++ ++  E + P+ FT+ S+L  C      + G+     
Sbjct: 413 ---------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQ 463

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLS 500
           +    G   ++   + +I++  +   +D A+ + + L  K N ++ W+ +++
Sbjct: 464 VLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRL--KENDVVSWTAMIA 512



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 112/245 (45%), Gaps = 29/245 (11%)

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G ++ A  +F  +  +   CW  +   +           LF  ML+++V  D+   + V+
Sbjct: 111 GDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVL 170

Query: 331 SSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
             C+  A S    + +H K +  G +    + + LID+Y K G    A  VF  +  R+ 
Sbjct: 171 RGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDS 230

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSW +MI+G +QNG + EA+ L+ ++              VLSAC   + FE G+     
Sbjct: 231 VSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQ---- 272

Query: 450 ISAVHGITP----SLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
              +HG+      S + Y C  ++ L  RS ++  A  +   +  + + + +++L+S  A
Sbjct: 273 ---LHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQR-DRVSYNSLISGLA 328

Query: 504 MKGDI 508
            +G I
Sbjct: 329 QQGYI 333


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/724 (32%), Positives = 390/724 (53%), Gaps = 55/724 (7%)

Query: 10  AIDTLYSRGQAATEEA--YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           +I + YS     TE    +++++      N    A  LQ+  D +F +     +H  +L 
Sbjct: 130 SIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ-IHAAIL- 187

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
              KSG++             D+   NAL++ + R G + +   +F  +  +D V++N+ 
Sbjct: 188 ---KSGRVL------------DVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSM 232

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           + GF   G   EAL+ F  +Q    +P   + +S + A  +L  L  GK+IH   +    
Sbjct: 233 LTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGF 292

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             N+ V N L DMYAK   +      FD M +++L+SW    +GY +N    + ++L ++
Sbjct: 293 DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQ 352

Query: 248 MQLLGLNPDEVTVSNILGAC----------------------------------FQTGRI 273
           +Q+ G++ D   + +IL AC                                   + G I
Sbjct: 353 LQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECGII 412

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A R+F  I+ KD V WT+MI  Y  NG    AL +F+ M    + PD  ++ S++S+ 
Sbjct: 413 DYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV 472

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L++L  G+ +HG  +  G   +  +S+ L+DMY +CG  +DA+ +F     RN++ W 
Sbjct: 473 CSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWT 532

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI+ Y  +G    A+ L+ ++  E + PD  TF+++L AC H+ L   G++  + +   
Sbjct: 533 AMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCE 592

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + + P  +HY C+++LLGR + +++A  ++KS+ ++P   +W  LL  C +  + + GE+
Sbjct: 593 YQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEV 652

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  L EL+  N G Y+++SN++AA GRW+DV  +R  MK   + K    SWIE+ NK+H
Sbjct: 653 AAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIH 712

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
            F+S D+ HPE + IY++L+++ +KL+ E G+   TK VLH+  EEEKV+ +  HSE+LA
Sbjct: 713 AFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLA 772

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +AY L+    G TPIR+ KN+RVCGDCH F    S    R +I+RD++RFHHF  G CSC
Sbjct: 773 IAYGLLATAEG-TPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSC 831

Query: 693 KDNW 696
            D W
Sbjct: 832 GDFW 835



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 161/546 (29%), Positives = 251/546 (45%), Gaps = 97/546 (17%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           + + GSV D   +FDKM  R   ++N  + G+ + G +  AL+++  M+        YT 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
              L AC  + DL  G +IHG  +       VFV N+L  +YAK  +I+ AR LFDRM  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 220 RN-LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
           RN +VSWN +IS Y  NG   + + LF EM   G+  +  T +  L AC           
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 268 -----FQTGRIDD-------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                 ++GR+ D                   A  +F  ++ KD V W +M+ G+ QNG 
Sbjct: 182 IHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGL 241

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +AL  F ++ + D++PD+ SI S++ +  +L  L +G+ +H  A+  G D ++LV + 
Sbjct: 242 YSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNT 301

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KC         F++M  ++++SW +   GYAQN   L+AL L  +L  E +  D
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGIT-------PSLDHYACMINLLGRSSDV 476
           +    S+L AC       RG N    I  +HG T       P L +   +I++ G    +
Sbjct: 362 ATMIGSILLAC-------RGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGII 412

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLS------------------------------------ 500
           D AV + +S+  K + + W++++S                                    
Sbjct: 413 DYAVRIFESIECK-DVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSA 471

Query: 501 VCAM----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           VC++    KG   HG    R  F LE   +     L +MYA CG  ED   I +  K++N
Sbjct: 472 VCSLSTLKKGKEIHG-FIIRKGFILEGSISNT---LVDMYARCGSVEDAYKIFTCTKNRN 527

Query: 557 VKKFAA 562
           +  + A
Sbjct: 528 LILWTA 533



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/463 (28%), Positives = 232/463 (50%), Gaps = 45/463 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           N+L++ +A+   +   R LFD+M +R D VS+N+ I+ ++  G   EAL +FS M K   
Sbjct: 97  NSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGV 156

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
               YT  +AL AC     ++ G QIH  I+      +V+V NAL  MY + G++ +A  
Sbjct: 157 VTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAV 216

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F  +  +++V+WN M++G+++NG   + ++ F ++Q   L PD+V++ +I+ A  + G 
Sbjct: 217 IFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGY 276

Query: 273 IDD-----------------------------------AGRLFHVIKEKDNVCWTTMIVG 297
           + +                                    GR F ++  KD + WTT   G
Sbjct: 277 LLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y QN     AL L  ++  E +  D   I S++ +C  L  L   + +HG  +  G+ D 
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDP 396

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           +L  + +ID+Y +CG+ D A  +F  +  ++VVSW SMI+ Y  NG   +AL ++  + +
Sbjct: 397 VL-QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDV 476
             L+PD  T VS+LSA       ++G+  H   I     +  S+ +   ++++  R   V
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSV 513

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           + A  +     ++ N ++W+ ++S   M G   +GE AA  LF
Sbjct: 514 EDAYKIFTCTKNR-NLILWTAMISAYGMHG---YGE-AAVELF 551



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 154/328 (46%), Gaps = 44/328 (13%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K G +  A  +FD+M+ R++ +WN M+ GY+ NG+    +++++EM+ LG++ D  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 260 VSNILGAC-----------------------------------FQTGRIDDAGRLF-HVI 283
              +L AC                                    +   I+ A +LF  + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              D V W ++I  Y+ NG   +AL LF+EML   V  + ++ ++ + +C   + +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H   +  G   D+ V++AL+ MY + G   +A  +F  +  +++V+WNSM+ G+ QNG
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG--------QNHFDSISAVHG 455
              EAL  +  L   +LKPD  + +S++ A         G        +N FDS   V  
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLI 483
               +    C ++  GR+ D+    DLI
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLI 328



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 91/188 (48%), Gaps = 8/188 (4%)

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KCG   DA  +F+ M  R++ +WN+M+ GY  NG+ L AL +Y ++    +  DS+T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 427 FVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           F  +L AC +  DLF   + H   ++  +G    +     ++ L  + +D++ A  L   
Sbjct: 61  FPVLLKACGIVEDLFCGAEIH--GLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDR 118

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +  + + + W++++S  +  G        A  LF  E + AG         AA    ED 
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTE----ALCLFS-EMLKAGVVTNTYTFAAALQACEDS 173

Query: 546 ASIRSSMK 553
           + I+  M+
Sbjct: 174 SFIKLGMQ 181


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 361/634 (56%), Gaps = 45/634 (7%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N  L  +  + KL +  D F +           L++ +A    + D R LFDKM   D+V
Sbjct: 138 NHGLEIHGLASKLGFVDDPFIQ---------TGLIAMYASCRRIMDARLLFDKMCHPDAV 188

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++N  I G+   G   +AL++F  M+    +P      + L+AC    +L  G+ IH  +
Sbjct: 189 AWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFV 248

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  +  ++ AL +MYA  G +D AR ++D +++++L+    M+SGY K        
Sbjct: 249 KDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAK-------- 300

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                       G + DA  +F  + E+D VCW+ MI GY ++ 
Sbjct: 301 ---------------------------LGMVKDARFIFDQMIERDLVCWSAMISGYAESD 333

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           + ++AL LF+EML +   PD+ ++ SV+S+C+ + +L     +H      G    L V++
Sbjct: 334 QPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNN 393

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           ALIDMY KCG    A  VF  MP +NV+SW+SMIN +A +G    A+ L+ ++ + N++P
Sbjct: 394 ALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEP 453

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  TF+ VL AC HA L E G+  F S+   HGI+P+ +HY CM++L  R++ + KA++L
Sbjct: 454 NGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIEL 513

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+++P  PN +IW +L+S C + G+ + GE AA+ L ELEP + G  ++LSN+YA   RW
Sbjct: 514 IETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYAKEKRW 573

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
            DV  IR SM  K + K  A S IEI+N+VH F+  DR H +++ IYE+L +++ KL+  
Sbjct: 574 NDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLV 633

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P+T  +L D +EE+K + + +HSEKLA+ Y LI +    + IRI+KN+R+C DCH F
Sbjct: 634 GYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISR-RNESCIRIVKNLRICEDCHSF 692

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           MK  S +    I++RD  RFHH  GG CSC+D W
Sbjct: 693 MKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 135/248 (54%), Gaps = 1/248 (0%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C    ++   + +   +  N Y  ++  L   L++ YA  G +  AR ++D +  + +I 
Sbjct: 232 CGHAGNLSYGRTIHEFVKDNGYAIDS-HLQTALINMYANCGAMDLARKIYDGLSSKHLIV 290

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
             A+LS +A+ G V+D R +FD+M  RD V ++  I+G+A     +EAL++F  M + R 
Sbjct: 291 STAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRS 350

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T +S ++AC+ +  L +   IH  +     G  + V NAL DMYAK G + KAR 
Sbjct: 351 VPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKARE 410

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ M  +N++SW+ MI+ +  +G     I LF+ M+ + + P+ VT   +L AC   G 
Sbjct: 411 VFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGL 470

Query: 273 IDDAGRLF 280
           +++  +LF
Sbjct: 471 VEEGEKLF 478



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 182/416 (43%), Gaps = 51/416 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+   L+  YA   ++  AR LFDKM   D ++WN ++  + ++G   D   LF+ M   
Sbjct: 157 FIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSS 216

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL--LDLR 173
               DSV   T ++   + G       +   ++ + +    +   + +N  A    +DL 
Sbjct: 217 DMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLA 276

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           R      KI  G    ++ V  A+   YAK G +  AR++FD+M  R+LV W+ MISGY 
Sbjct: 277 R------KIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYA 330

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA------------GR--- 278
           ++ QP++ + LF EM      PD++T+ +++ AC   G +  A            GR   
Sbjct: 331 ESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALS 390

Query: 279 --------------------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                               +F  +  K+ + W++MI  +  +G  + A+ LF  M   +
Sbjct: 391 VNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVN 450

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDA 377
           + P+  +   V+ +C     +  G+ +    +   G+         ++D+YC+      A
Sbjct: 451 IEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKA 510

Query: 378 WTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             +   MP   NV+ W S+++    +G+         +LL+  L+PD    + VLS
Sbjct: 511 IELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLE--LEPDHDGALVVLS 564



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 6/199 (3%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D+FS  S++ + +K+++  HG  +HG A  LG  DD  + + LI MY  C    DA  +F
Sbjct: 120 DRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLF 179

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + M   + V+WN +I+GY QNG   +AL L++ +   ++KPDS    +VLSAC HA    
Sbjct: 180 DKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLS 239

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G+   + +   +G          +IN+      +D A  +   L  K + ++ + +LS 
Sbjct: 240 YGRTIHEFVKD-NGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSK-HLIVSTAMLSG 297

Query: 502 CAMKGDIKHGEMAARHLFE 520
            A  G +K     AR +F+
Sbjct: 298 YAKLGMVKD----ARFIFD 312


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/639 (37%), Positives = 358/639 (56%), Gaps = 68/639 (10%)

Query: 60  FLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           F+ +R+L F A S  G + YAR LF ++   DI   N L+ A+A           F   P
Sbjct: 68  FVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYA-----------FSPNP 116

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           I   V Y+             E+  VF         P  +T    L AC+++  LR G+ 
Sbjct: 117 IDAVVFYSEMT----------ESSVVF---------PDVHTFPLLLKACSEIPSLRLGEA 157

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IH  +        V V N L  MYA  G I+ A  +FDR    +  SWN+MI GYLK G 
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG- 216

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                         F++ R     R+F  + ++D V W+ MI G
Sbjct: 217 -----------------------------VFKSAR-----RMFEAMPDRDVVSWSVMING 242

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y Q  + ++ L LF +M+ E + P++  + + +S+CA L ++  GQ +        V   
Sbjct: 243 YVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLT 302

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + + +ALIDMY KCG  + A  VF+ M  +NV++W++MING A NGQ  +AL L+ ++  
Sbjct: 303 VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEM 362

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + +KP+  TF+ +L+AC H+ L + G + F S+++++G+ P+  H+ CM++L GR+  +D
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  +IKS+P KPNS IW  LL+ C + GD + GE   + L EL+P + G Y++LSN+YA
Sbjct: 423 QAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYA 482

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           ACGRW+ VA +R  M+ + V K    S+I++ + +H+FV+ D +HP+ E+IY +L ++ +
Sbjct: 483 ACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQ 542

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +L+ AG+ P+T  VL D  EEEK  ++C+HSEKLA+A+ LIK   G T IRI KN+RVC 
Sbjct: 543 ELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTT-IRITKNLRVCA 601

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   K  S I  R II+RD  RFHHF  G+CSC D W
Sbjct: 602 DCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/375 (28%), Positives = 185/375 (49%), Gaps = 22/375 (5%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +  L+  C+ +  + L + + SH+       +   + N L+  YA  G +  A  +FD+ 
Sbjct: 139 FPLLLKACSEIPSLRLGEAIHSHV-FKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P  D  SWN ++  + + G  +  R +F+ MP RD VS++  I G+  +   +E L +F 
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQ 257

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M  ++ EP +   V+AL+ACA L  + +G+ I   +   N+   V +  AL DMY+K G
Sbjct: 258 DMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCG 317

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +++A  +F +M  +N+++W+ MI+G   NGQ K  ++LF +M++ G+ P+EVT   IL 
Sbjct: 318 SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILN 377

Query: 266 ACFQTGRIDDAGRLFHVIKE----KDNV---CWTTMIVGYTQNGKEEDALILFNEMLSED 318
           AC  +  +D+    FH +      K N    C   M+  Y + G  + A  +   M    
Sbjct: 378 ACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHC--CMVDLYGRAGMLDQAQTVIKSM---P 432

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAV---VLGVDDDLLVSSALI-DMYCKCGVT 374
            +P+     +++++C       HG    G+ V   +L +D +      L+ ++Y  CG  
Sbjct: 433 FKPNSAIWGALLNACR-----IHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYAACGRW 487

Query: 375 DDAWTVFNMMPTRNV 389
           D    +  MM  R V
Sbjct: 488 DRVAELRRMMRERQV 502



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 130/292 (44%), Gaps = 36/292 (12%)

Query: 252 GLNPDEVTVSNIL--GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           G+  D    S IL   A    G I  A  LF+ I++ D     T+I  Y  +    DA++
Sbjct: 62  GIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVV 121

Query: 310 LFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            ++EM  S  V PD  +   ++ +C+++ SL  G+ +H     LG   ++ VS+ L+ MY
Sbjct: 122 FYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMY 181

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMI-------------------------------N 397
             CG+ + A  VF+  P  +  SWN MI                               N
Sbjct: 182 ASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMIN 241

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           GY Q  +  E L L+  ++ E ++P+    V+ LSAC H    E+GQ   +       + 
Sbjct: 242 GYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQ-WIERYMERKNVR 300

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
            ++     +I++  +   V++A+++   +  K N L WS +++  A+ G  K
Sbjct: 301 LTVRLGTALIDMYSKCGSVERALEVFHKMKEK-NVLAWSAMINGLAINGQGK 351


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/578 (39%), Positives = 343/578 (59%), Gaps = 40/578 (6%)

Query: 158 THVS----ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           THVS     L  CA+   L +GK  H +I++  L  ++   N L +MY+K G +D AR +
Sbjct: 62  THVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQV 121

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M +R+LVSWN MI    +NG+  + +DL  +MQ  G    E T+S++L AC      
Sbjct: 122 FDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCAL 181

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA  +F  + ++  V W++M  GY
Sbjct: 182 SECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGY 241

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E AL LF +     ++ D+F +SSV+ +CA LA++  G+ ++      G   ++
Sbjct: 242 VQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNI 301

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V+S+LIDMY KCG  ++++ VF  +  RNVV WN+MI+G +++ + LE + L++K+ Q 
Sbjct: 302 FVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQM 361

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L P+  TFVSVLSAC H  L  +GQ +FD ++  H + P++ HY+CM++ L R+  + +
Sbjct: 362 GLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFE 421

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A DLI  LP   ++ +W +LL+ C   G+++  E+AA+ LF++EP N+G Y++LSNMYAA
Sbjct: 422 AYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAA 481

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W++VA +R  +K  +VKK    SWIEI +KVH F+  +R HP+   IY +L++++ +
Sbjct: 482 NGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDE 541

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           LQ+ G+   T+  LH   E  K + + +HSEKLA    L+  P    PIRIMKN+R+CGD
Sbjct: 542 LQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPN-APIRIMKNLRICGD 600

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH FMK AS    R +I+RD+NRFHHF  G CSC D W
Sbjct: 601 CHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 198/413 (47%), Gaps = 58/413 (14%)

Query: 52  NFYEPNTTFLHNRLLHFYAK-----SGKLFYARDLFDKMPLR-DIISWNALLSAHARSGS 105
           +F   + +F+H  +L   AK      GK  +A+ L   M L+ D+++ N L++ +++ GS
Sbjct: 58  DFNATHVSFVH-EILKLCAKRKLLLQGKACHAQILL--MGLKTDLLTSNILINMYSKCGS 114

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           V   R +FD+MP R  VS+NT I      G   EAL +  +MQ++    +++T  S L A
Sbjct: 115 VDFARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCA 174

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           CA    L   + +H   +   +  NVFV  AL D+YAK G +  A  +F+ M +R++V+W
Sbjct: 175 CAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTW 234

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------ 267
           + M +GY++N   ++ + LF++    GL  D+  +S+++ AC                  
Sbjct: 235 SSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSK 294

Query: 268 -----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                             + G I+++ ++F  +++++ V W  MI G +++ +  + +IL
Sbjct: 295 SGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMIL 354

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-----SALI 365
           F +M    + P+  +  SV+S+C  +  +  GQ    K   L   +  L       S ++
Sbjct: 355 FEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQ----KYFDLMTKEHHLAPNVFHYSCMV 410

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ----DLEALALYD 413
           D   + G   +A+ + + +P     S W S++     +G     ++ A  L+D
Sbjct: 411 DTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFD 463


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/732 (33%), Positives = 391/732 (53%), Gaps = 85/732 (11%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  RG  A +   T LV  CT++  +E  +RL  H+ +  +  +                
Sbjct: 21  MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTD---------------- 64

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
                      +PL       ALL  +A+ GS+ D + +F+ M I+D  ++++ IA +A 
Sbjct: 65  -----------IPLE-----TALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYAR 108

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G    A+ ++ RM  +  EP   T   AL  CA +  L  G+ IH +I+   +  +  +
Sbjct: 109 AGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVL 168

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLG 252
           +++L +MY K  E+ +AR +F+ M  RN+ S+  MIS Y++ G+  + ++LF  M ++  
Sbjct: 169 QDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEA 228

Query: 253 LNPDEVTVSNILGACFQTGRID-----------------------------------DAG 277
           + P+  T + ILGA    G ++                                   +A 
Sbjct: 229 IEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEAR 288

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           ++F  +  ++ + WT+MI  Y Q+G  ++AL LF  M   DV P   S SS +++CA L 
Sbjct: 289 KVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLG 345

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ +H + V   +    + +S L+ MY +CG  DDA  VFN M TR+  S N+MI 
Sbjct: 346 ALDEGREIHHRVVEANLASPQMETS-LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIA 404

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            + Q+G+  +AL +Y K+ QE +  D  TFVSVL AC H  L    ++   S+   HG+ 
Sbjct: 405 AFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVV 464

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P ++HY CM+++LGRS  +  A +L++++P++ +++ W TLLS C   GD+  GE AAR 
Sbjct: 465 PLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARK 524

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           +FEL P    PY+ LSNMYAA  R++D   +R  M+ + V +  A S+IEIDN++H F S
Sbjct: 525 VFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTS 584

Query: 578 EDRTHPET-------EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ----EEEKVKSICY 626
             R   +        E +   L +L++ +++AG+ P+T+ V  + Q    EEEK +S+C+
Sbjct: 585 GGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCF 644

Query: 627 HSEKLALAYCLI--KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
           HSE+LA+AY LI  K P    P+R++ + RVC  CH  +K  SDI  + I +RD +RFHH
Sbjct: 645 HSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHH 704

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D+W
Sbjct: 705 FEKGACSCGDHW 716



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 217/463 (46%), Gaps = 44/463 (9%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           IA    +G   +AL+++  M++       +   S + AC +L  L  G+++H  +++   
Sbjct: 2   IAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGF 61

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             ++ +  AL  MYAK G +D A+ +F+ M  ++L +W+ +I+ Y + G+ +  + L++ 
Sbjct: 62  RTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYRR 121

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDD-------------------------------- 275
           M   G+ P+ VT +  LG C     + D                                
Sbjct: 122 MIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDE 181

Query: 276 ---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVS 331
              A ++F  +K ++   +T MI  Y Q G+  +AL LF+ M   E + P+ ++ ++++ 
Sbjct: 182 MVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILG 241

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +   L +L  G+ VH      G D +++V +AL+ MY KCG   +A  VF+ M  RNV+S
Sbjct: 242 AVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVIS 301

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W SMI  YAQ+G   EAL L+ ++   +++P   +F S L+AC      + G+     + 
Sbjct: 302 WTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVV 358

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +  +P ++    ++++  R   +D A  +   +  + ++   + +++     G  K  
Sbjct: 359 EANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQHGRKKQA 415

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
               R + E E I A   I   ++  AC     VA  R  ++S
Sbjct: 416 LRIYRKM-EQEGIPADG-ITFVSVLVACSHTSLVADCRDFLQS 456



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 191/400 (47%), Gaps = 76/400 (19%)

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           MI+  ++ G+P + ++L+ EM+  G+  D+  V++++ AC                    
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 268 FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           F+T               G +DDA R+F  ++ KD   W+++I  Y + G+ E A++L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M++E V P+  + +  +  CA +A L  G+ +H + +   V  D ++  +L++MY KC 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVL 431
              +A  VF  M  RNV S+ +MI+ Y Q G+  EAL L+ ++ + E ++P+++TF ++L
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 432 SAC-----------LHADLFERG-------QNH-----------------FDSISAVHGI 456
            A            +H  L  RG       QN                  FDS++A + I
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           +     +  MI    +  +  +A++L K +  +P+ + +S+ L+ CA+ G +  G     
Sbjct: 301 S-----WTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHH 355

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            + E    +      L +MYA CG  +D   + + MK+++
Sbjct: 356 RVVEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTRD 395



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 45/304 (14%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI    + G+   AL L+ EM    +  DKF ++S+V++C KL +L  G+ +H   ++ G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              D+ + +AL+ MY KCG  DDA  VF  M  +++ +W+S+I  YA+ G+   A+ LY 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 414 KLLQENLKPDSFTFVSVLSAC-----------------------------------LHAD 438
           +++ E ++P+  TF   L  C                                   L  D
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH----KPNSLI 494
                +  F+ + A      ++  Y  MI+   ++ +  +A++L   +      +PN+  
Sbjct: 181 EMVEARKVFEGMKA-----RNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYT 235

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           ++T+L      G+++ G    RHL       N      L  MY  CG   +   +  SM 
Sbjct: 236 FATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMT 295

Query: 554 SKNV 557
           ++NV
Sbjct: 296 ARNV 299


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/636 (36%), Positives = 366/636 (57%), Gaps = 37/636 (5%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ ++AR G ++  R +FDK P     ++N  I  ++ +G   EAL ++ RM  +   P 
Sbjct: 45  LIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVRPD 104

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             T+   L AC + LDLR G++   + V    G +VFV  A+ ++YAK G++D+A  +FD
Sbjct: 105 SSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFD 164

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
           +M  R+LV W  MI+G  +NGQ ++ +D++++M    +  D V +  ++ AC        
Sbjct: 165 KMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 268 ------------------FQT---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                              QT         G ++ A  +F  +  K+ + W+ +I G+ Q
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG   +AL L  +M S   +PD  S+ SV+ +C+++  L  G+ VHG  +V  +  D + 
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGY-IVRRLHFDCVS 343

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           S+A+IDMY KCG    A TVF+ +  R+ +SWN++I  Y  +G   EAL+L+ ++ + N+
Sbjct: 344 STAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNV 403

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD  TF S+LSA  H+ L E+G+  F  +   + I PS  HYACM++LL R+  V++A 
Sbjct: 404 KPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQ 463

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +LI+S+  +P   IW  LLS C   G    GEMAA+ + EL P + G Y ++SN +A   
Sbjct: 464 ELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATAR 523

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW++VA +R  MK   +KK   YS +E++ K+H F+ ED++H + E I + L KL  +++
Sbjct: 524 RWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMK 583

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
             G+ P T+ VLH+ +EE K + +C HSE+LA+A+ L+    G T + I KN+RVCGDCH
Sbjct: 584 AMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGPG-TRLLITKNLRVCGDCH 642

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              KF S I+ R I++RD  RFHHF  G CSC D W
Sbjct: 643 EATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 181/392 (46%), Gaps = 51/392 (13%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH  +++  + G+      L   YA+ G I+ AR +FD+     + +WN MI  Y + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-------------------------- 270
              + + L+  M   G+ PD  T + +L AC ++                          
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGA 144

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G++D+A R+F  +  +D VCWTTMI G  QNG+  +A+ ++ +M  + V  
Sbjct: 145 AVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEG 204

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D   +  ++ +C  L     G  +HG  +   +  D++V ++L+DMY K G  + A  VF
Sbjct: 205 DGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVF 264

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             M  +NV+SW+++I+G+AQNG    AL L   +     KPDS + VSVL AC      +
Sbjct: 265 RRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLK 324

Query: 442 RGQNHFDSISAVHGITPSLDHYAC-----MINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
            G+       +VHG      H+ C     +I++  +   +  A  +   +  + +S+ W+
Sbjct: 325 LGK-------SVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWN 376

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
            +++   + G    GE A     ++   N  P
Sbjct: 377 AIIASYGIHGS---GEEALSLFLQMRETNVKP 405



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 114/461 (24%), Positives = 203/461 (44%), Gaps = 82/461 (17%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRL-QSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           + S G       YT ++  CTR  D+   +   +  +D  +   +  F+   +L+ YAK 
Sbjct: 96  MASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGY--GDDVFVGAAVLNLYAKC 153

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK+  A  +FDKM  RD++ W                                T I G A
Sbjct: 154 GKMDEAMRVFDKMGRRDLVCW-------------------------------TTMITGLA 182

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             G +REA+ ++ +M K R E      +  + AC  L   + G  IHG ++  ++  +V 
Sbjct: 183 QNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVI 242

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V+ +L DMYAK G ++ A  +F RM  +N++SW+ +ISG+ +NG     + L  +MQ  G
Sbjct: 243 VQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFG 302

Query: 253 LNPDEVTVSNILGACFQT----------------------------------GRIDDAGR 278
             PD V++ ++L AC Q                                   G +  A  
Sbjct: 303 YKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFART 362

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  I  +D++ W  +I  Y  +G  E+AL LF +M   +V+PD  + +S++S+ +    
Sbjct: 363 VFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFS---- 418

Query: 339 LYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVS 391
            + G V  G+     + ++  +       + ++D+  + G  ++A  +   M T   +  
Sbjct: 419 -HSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAI 477

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           W ++++G   +G+ L       K+L+  L PD     S++S
Sbjct: 478 WVALLSGCLNHGKFLIGEMAAKKVLE--LNPDDPGIYSLVS 516


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/699 (32%), Positives = 385/699 (55%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           ++  + + G + +A   F ++    +   N++L+ +A+S  V     LF+ MP RD VS+
Sbjct: 203 IVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSW 262

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++  +  G +REAL V   M          T+ S+L ACA+L  L  GKQ+H +++ 
Sbjct: 263 NMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIR 322

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +A+ ++YAK G   +AR +F  + +RN VSW ++I G+L+ G   + ++L
Sbjct: 323 SLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLEL 382

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           F +M+   +  D+  ++ I+  C                                    +
Sbjct: 383 FNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAK 442

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYT------------------------------ 299
            G + +A  +F  ++E+D V WT M+  Y+                              
Sbjct: 443 CGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAY 502

Query: 300 -QNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L +++ ML+E DV PD  +  ++   CA + +   G  + G  V +G+  D
Sbjct: 503 IQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILD 562

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +A+I MY KCG   +A  +F+ +  +++VSWN+MI GY+Q+G   +A+ ++D +L+
Sbjct: 563 TSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLK 622

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           +  KPD  ++V+VLS+C H+ L + G+ +FD +   H ++P L+H++CM++LL R+ ++ 
Sbjct: 623 KGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLI 682

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A +LI  +P KP + +W  LLS C   G+ +  E+AA+HLF+L+  ++G Y++L+ +YA
Sbjct: 683 EAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYA 742

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+  D A +R  M+ K +KK   YSW+E+ NKVH F +ED +HP+   I E+L +L++
Sbjct: 743 DAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELME 802

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+ + G+              E ++S  +HSEKLA+A+ ++  P    PI IMKN+R+CG
Sbjct: 803 KIAQLGYV-----------RTESLRSEIHHSEKLAVAFGIMNLP-AWMPIHIMKNLRICG 850

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S + GR  ++RD+ RFHHF GG+CSC D W
Sbjct: 851 DCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 134/514 (26%), Positives = 234/514 (45%), Gaps = 101/514 (19%)

Query: 55  EPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD------ 108
           EPN    HN +++ YAK G L  A +LF +MP RD+ SWN L+S + +SG   D      
Sbjct: 92  EPNV-ITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 109 -LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNA 165
            +R   D +P  ++ ++  A+      G+   ALQ+   + K  F+  P   T +  +  
Sbjct: 151 SMRRSGDSLP--NAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFV 208

Query: 166 CAQLLDL--RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
               +D   ++  QI            VF RN++   YAK   +D A  LF+ M  R++V
Sbjct: 209 RCGAVDFASKQFSQIERP--------TVFCRNSMLAGYAKSYGVDHALELFESMPERDVV 260

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------- 267
           SWN+M+S   ++G+ ++ + +  +M   G+  D  T ++ L AC                
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQV 320

Query: 268 -------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                               + G   +A R+F  +++++ V WT +I G+ Q G   ++L
Sbjct: 321 IRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESL 380

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            LFN+M +E +  D+F++++++S C+    +   + +H  ++  G    +++S++LI MY
Sbjct: 381 ELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMY 440

Query: 369 CKCGVTDDA--------------WT-----------------VFNMMPTRNVVSWNSMIN 397
            KCG   +A              WT                  F+ M TRNV++WN+M+ 
Sbjct: 441 AKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLG 500

Query: 398 GYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            Y Q+G + + L +Y  +L E ++ PD  T+V++   C  AD+   G N        H +
Sbjct: 501 AYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGC--ADM---GANKLGDQITGHTV 555

Query: 457 -------TPSLDHYACMINLLGRSSDVDKAVDLI 483
                  T  ++    M +  GR S+  K  D +
Sbjct: 556 KVGLILDTSVMNAVITMYSKCGRISEARKIFDFL 589



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/494 (24%), Positives = 208/494 (42%), Gaps = 112/494 (22%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL------------------------ 197
           AL +C     L   + +HG++V   L   VF++N L                        
Sbjct: 34  ALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEP 93

Query: 198 --------TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM- 248
                    + YAK G +  A  LF RM  R++ SWN ++SGY ++G+    ++ F  M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 249 -----------------------------QLLGL--------NPDEVTVSNILGACFQTG 271
                                        QLLGL        +PD  T   I+    + G
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVAT--GIVDMFVRCG 211

Query: 272 RIDDAGRLFHVIK-------------------------------EKDNVCWTTMIVGYTQ 300
            +D A + F  I+                               E+D V W  M+   +Q
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +G+  +AL +  +M +  VR D  + +S +++CAKL+SL  G+ +H + +      D  V
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +SA++++Y KCG   +A  VF+ +  RN VSW  +I G+ Q G   E+L L++++  E +
Sbjct: 332 ASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELM 391

Query: 421 KPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
             D F   +++S C +  D+    Q H  S+S   G T ++     +I++  +  ++  A
Sbjct: 392 TVDQFALATIISGCSNRMDMCLARQLH--SLSLKSGHTRAVVISNSLISMYAKCGNLQNA 449

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE-LEPINAGPYIMLSNMYAA 538
             +  S+  + + + W+ +L+  +  G+I      AR  F+ +   N   +  +   Y  
Sbjct: 450 ESIFSSMEER-DIVSWTGMLTAYSQVGNIGK----AREFFDGMSTRNVITWNAMLGAYIQ 504

Query: 539 CGRWEDVASIRSSM 552
            G  ED   + S+M
Sbjct: 505 HGAEEDGLKMYSAM 518



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 8/207 (3%)

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + +++  + +++ Y K G   DA  +F  MP R+V SWN++++GY Q+G+ L+A+  + 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 414 KLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            + +  +  P++FTF   + +C      E        ++   G     D    ++++  R
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKF-GFQGDPDVATGIVDMFVR 209

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIM 531
              VD A      +  +P     +++L+  A    + H    A  LFE  P  +   + M
Sbjct: 210 CGAVDFASKQFSQI-ERPTVFCRNSMLAGYAKSYGVDH----ALELFESMPERDVVSWNM 264

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVK 558
           + +  +  GR  +  S+   M ++ V+
Sbjct: 265 MVSALSQSGRAREALSVAVDMHNRGVR 291


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/730 (33%), Positives = 386/730 (52%), Gaps = 104/730 (14%)

Query: 38   DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
            D+   + L  H+  N    +   L + L+  Y+K G +  A  +F  +  R+ +S+NALL
Sbjct: 392  DIGKGRELHGHLVRNLLNSDI-ILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALL 450

Query: 98   SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTD 156
            + + + G  +                               EAL+++  MQ +D  +P  
Sbjct: 451  AGYVQEGKAE-------------------------------EALELYHDMQSEDGIQPDQ 479

Query: 157  YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
            +T  + L  CA   +  +G+QIH  ++  N+  N+ V   L  MY++ G ++ A+ +F+R
Sbjct: 480  FTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNR 539

Query: 217  MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-----QTG 271
            M  RN  SWN MI GY +NG+ ++ + LF++MQL G+ PD  ++S++L +C      Q G
Sbjct: 540  MAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG 599

Query: 272  R------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
            R                              +D A +++    +KD +    M+  +  +
Sbjct: 600  RELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNS 659

Query: 302  GKEEDALILFN-------------------------------EMLSEDVRPDKFSISSVV 330
            G+  DA  LF+                               EML  D+  D  ++ ++V
Sbjct: 660  GRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 719

Query: 331  SSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            + C+ L +L HG  +H   +  G V+  +++ +AL+DMY KCG    A TVF+ M  +N+
Sbjct: 720  NLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNI 779

Query: 390  VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
            VSWN+MI+GY+++G   EAL LY+++ ++ + P+  TF+++LSAC H  L E G   F S
Sbjct: 780  VSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTS 839

Query: 450  ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
            +   + I    +HY CM++LLGR+  ++ A + ++ +P +P    W  LL  C +  D+ 
Sbjct: 840  MQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMD 899

Query: 510  HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
             G +AA+ LFEL+P N GPY+++SN+YAA GRW++V  IR  MK K VKK    SWIEI+
Sbjct: 900  MGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEIN 959

Query: 570  NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY--- 626
            +++  F +  +THP+TE IY  L  L  + +  G+ P+T  +L + ++ ++ +   Y   
Sbjct: 960  SEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQ 1019

Query: 627  HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
            HSE+LAL+  LI  P   T IR+ KN+R+CGDCH   KF S I GR II RD+NRFHHF 
Sbjct: 1020 HSERLALSLGLISLPKKST-IRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFE 1078

Query: 687  GGNCSCKDNW 696
             G CSC D W
Sbjct: 1079 NGKCSCGDYW 1088



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 197/386 (51%), Gaps = 36/386 (9%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL+  +AR G + D     D++     V++N  IAG+       EA  +F RM K    P
Sbjct: 215 ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCP 274

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            ++T  SAL  C  L     GKQ+H K++     G+ FV NAL DMYAK  + +    +F
Sbjct: 275 DNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVF 334

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG---------------------- 252
           D M  RN V+WN +IS   + G     + LF  MQ  G                      
Sbjct: 335 DEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIG 394

Query: 253 -------------LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                        LN D +  S ++    + G +++A ++F  + E++ V +  ++ GY 
Sbjct: 395 KGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYV 454

Query: 300 QNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           Q GK E+AL L+++M SED ++PD+F+ +++++ CA   +   G+ +H   +   +  ++
Sbjct: 455 QEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNI 514

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V + L+ MY +CG  + A  +FN M  RN  SWNSMI GY QNG+  EAL L+ ++   
Sbjct: 515 IVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLN 574

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQ 444
            +KPD F+  S+LS+C+     ++G+
Sbjct: 575 GIKPDCFSLSSMLSSCVSLSDSQKGR 600



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 145/567 (25%), Positives = 261/567 (46%), Gaps = 103/567 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D    NAL+  +A+    +    +FD+M  R+ V++N+ I+  A  G   +AL +F RMQ
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  ++   +   S L A A L D+ +G+++HG +V   L  ++ + +AL DMY+K G ++
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC 267
           +A  +F  +  RN VS+N +++GY++ G+ ++ ++L+ +MQ   G+ PD+ T + +L  C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 268 F-----------------------------------QTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + GR++ A  +F+ + E++   W 
Sbjct: 490 ANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWN 549

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI GY QNG+ ++AL LF +M    ++PD FS+SS++SSC  L+    G+ +H   V  
Sbjct: 550 SMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN 609

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTV-------------------------------F 381
            ++++ ++   L+DMY KCG  D AW V                               F
Sbjct: 610 TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLF 669

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
           + M  RN   WNS++ GYA  G   E+   + ++L+ +++ D  T V++++ C       
Sbjct: 670 DQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALE 729

Query: 435 ----LHADLFERG---------QNHFDSISAVHGITPS-----------LDHYACMINLL 470
               LH+ + ++G             D  S    IT +           +  +  MI+  
Sbjct: 730 HGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGY 789

Query: 471 GRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
            +     +A+ L + +P K   PN + +  +LS C+  G ++ G      + E   I A 
Sbjct: 790 SKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAK 849

Query: 528 P--YIMLSNMYAACGRWEDVASIRSSM 552
              Y  + ++    GR ED       M
Sbjct: 850 AEHYTCMVDLLGRAGRLEDAKEFVEKM 876



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/592 (26%), Positives = 263/592 (44%), Gaps = 113/592 (19%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y+ L+ DC   N  +  K + + M  N Y P+  +L  ++L  YA               
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDA-YLMTKILMLYA--------------- 117

Query: 86  PLRDIISWNALLSAHARSGSVQDL---RALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
                           RSG + DL   R LF++MP R+  ++NT I  +A      E L+
Sbjct: 118 ----------------RSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLR 161

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           ++ RM+        +T  S + AC  + D+   +Q+   +V   L  N+FV  AL D YA
Sbjct: 162 LYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYA 221

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           + G +D A    D +   ++V+WN +I+GY+K    ++   +F  M  +G+ PD  T ++
Sbjct: 222 RFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFAS 281

Query: 263 ILGACFQTGRIDDAG------------------------------------RLFHVIKEK 286
            L  C    R  D G                                    ++F  + E+
Sbjct: 282 ALRVCGAL-RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGER 340

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           + V W ++I    Q G   DAL+LF  M     + ++F++ S++ + A LA +  G+ +H
Sbjct: 341 NQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELH 400

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
           G  V   ++ D+++ SAL+DMY KCG+ ++A  VF  +  RN VS+N+++ GY Q G+  
Sbjct: 401 GHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAE 460

Query: 407 EALALYDKLLQEN-LKPDSFTFVSVLSAC-----------LHADLFERG--QNHFDSISA 452
           EAL LY  +  E+ ++PD FTF ++L+ C           +HA L      +N       
Sbjct: 461 EALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETEL 520

Query: 453 VHGITP--SLDH---------------YACMINLLGRSSDVDKAVDLIKSLPH---KPNS 492
           VH  +    L++               +  MI    ++ +  +A+ L K +     KP+ 
Sbjct: 521 VHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 493 LIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACG 540
              S++LS C    D + G        R+  E E I     ++L +MYA CG
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI---LQVVLVDMYAKCG 629



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 134/527 (25%), Positives = 215/527 (40%), Gaps = 91/527 (17%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK---A 210
           P  Y+  S +  C      +RGK IH +++      + ++   +  +YA+ G +D    A
Sbjct: 71  PLPYS--SLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-- 268
           R LF+ M  RNL +WN MI  Y +     + + L+  M+  G   D+ T  +++ AC   
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G +DDA      I+    V W  +I
Sbjct: 189 EDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVI 248

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY +    E+A  +F+ ML   V PD F+ +S +  C  L S   G+ VH K +  G  
Sbjct: 249 AGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFK 308

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D  V +ALIDMY KC   +    VF+ M  RN V+WNS+I+  AQ G   +AL L+ ++
Sbjct: 309 GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRM 368

Query: 416 LQENLKPDSFTFVSVLSAC-----------LHADLFER--------GQNHFD------SI 450
            +   K + F   S+L A            LH  L           G    D       +
Sbjct: 369 QESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMV 428

Query: 451 SAVHGITPSLDH-----YACMINLLGRSSDVDKAVDLIKSLPH----KPNSLIWSTLLSV 501
              H +  SL       Y  ++    +    ++A++L   +      +P+   ++TLL++
Sbjct: 429 EEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTL 488

Query: 502 CAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
           CA + +   G     HL       N      L +MY+ CGR      I + M  +N    
Sbjct: 489 CANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERN---- 544

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            AYSW       +  +   + + ET    +E  +L K++Q  G  P+
Sbjct: 545 -AYSW-------NSMIEGYQQNGET----QEALRLFKQMQLNGIKPD 579


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/642 (36%), Positives = 359/642 (55%), Gaps = 43/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL  +A +G  ++   +F +MP +D +S+N+ +A F N G S +AL +   M +    
Sbjct: 401  NTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKS 460

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T  SAL AC       +G+ +HG +VV  L  N  + NAL  MY K G +  +R +
Sbjct: 461  VNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRV 520

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
              +M  R++V+WN +I GY +N  P K +  FQ +++ G++ + +TV ++L AC   G +
Sbjct: 521  LLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDL 580

Query: 274  DDAGR------------------------------------LFHVIKEKDNVCWTTMIVG 297
             + G+                                    LF+ +  +  + W  ++  
Sbjct: 581  LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAA 640

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
               +G  E+ L L ++M S  +  D+FS S  +S+ AKLA L  GQ +HG AV LG + D
Sbjct: 641  NAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFELD 700

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
              + +A  DMY KCG   +   V  M+P    R++ SWN +I+   ++G   E    + +
Sbjct: 701  CFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHE 757

Query: 415  LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            +L+  +KP   TFVS+L+AC H  L ++G  ++D I+   G+ P+++H  C+I+LLGRS 
Sbjct: 758  MLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSG 817

Query: 475  DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
             + +A   I  +P KPN L+W +LL+ C +  D+  G  AA +L +LEP +   +++ SN
Sbjct: 818  RLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSN 877

Query: 535  MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            M+A  GRWEDV ++R  M  KN+KK  A SW+++ +KV  F   DRTHP+T  IY +L  
Sbjct: 878  MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 937

Query: 595  LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            + K ++E+G+  +T   L DT EE+K  ++  HSE+LALAY L+  P G T +RI KN+R
Sbjct: 938  IKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGST-VRIFKNLR 996

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +C DCH   KF S +IGR I+LRD  RFHHF  G CSCKD W
Sbjct: 997  ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 244/486 (50%), Gaps = 40/486 (8%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           ++  N L++ + + G V+  R LFDKMP+R+ VS+NT ++G    G   E ++ F +M  
Sbjct: 93  VLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCD 152

Query: 150 DRFEPTDYTHVSALNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              +P+ +   S + AC +   + R G Q+HG +    L  +V+V  A+  +Y   G + 
Sbjct: 153 LGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVS 212

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            +R +F+ M +RN+VSW  ++ GY   G+P++ ID+++ M+  G+  +E ++S ++ +C 
Sbjct: 213 CSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCG 272

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                                G +D A  +F+ I E+D + W +
Sbjct: 273 LLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNS 332

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y QNG  E++  +FN M       +  ++S+++S    +     G+ +HG  V +G
Sbjct: 333 IVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMG 392

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D  + V + L+ MY   G +++A  VF  MPT++++SWNS++  +  +G+ L+AL +  
Sbjct: 393 FDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILC 452

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +++     +  TF S L+AC   + F++G+     +  V G+  +      ++++ G+ 
Sbjct: 453 SMIRTGKSVNYVTFTSALAACFSPEFFDKGRI-LHGLVVVSGLFDNQIIGNALVSMYGKI 511

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +  +  ++  +P + + + W+ L+   A   D     +AA     +E ++A  YI + 
Sbjct: 512 GGMSTSRRVLLQMPRR-DVVAWNALIGGYAENEDPDKA-LAAFQTLRVEGVSAN-YITVV 568

Query: 534 NMYAAC 539
           ++ +AC
Sbjct: 569 SVLSAC 574



 Score =  184 bits (467), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 227/491 (46%), Gaps = 74/491 (15%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            ++   +LH Y   G +  +R +F++MP R+++SW +L+                     
Sbjct: 195 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLM--------------------- 233

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                      G+++KG   E + ++  M+ +  E  + +    +++C  L D   G+QI
Sbjct: 234 ----------VGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQI 283

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            G+++   L   + V N+L  M+   G +D A ++F++++ R+ +SWN +++ Y +NG  
Sbjct: 284 IGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHI 343

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILG--------------------------ACF---- 268
           ++   +F  M+      +  TVS +L                            C     
Sbjct: 344 EESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTL 403

Query: 269 -----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  GR ++A  +F  +  KD + W +++  +  +G+  DAL +   M+      + 
Sbjct: 404 LRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNY 463

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            + +S +++C        G+++HG  VV G+ D+ ++ +AL+ MY K G    +  V   
Sbjct: 464 VTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQ 523

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFER 442
           MP R+VV+WN++I GYA+N    +ALA +  L  E +  +  T VSVLSACL   DL ER
Sbjct: 524 MPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLER 583

Query: 443 GQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           G+  H   +SA  G          +I +  +  D+  + DL   L ++ + + W+ +L+ 
Sbjct: 584 GKPLHAYIVSA--GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-SIITWNAILAA 640

Query: 502 CAMKGDIKHGE 512
            A  G   HGE
Sbjct: 641 NAHHG---HGE 648



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 188/379 (49%), Gaps = 56/379 (14%)

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           +Q+     G+ +H   V G +  +V   N L +MY K G +  AR+LFD+M  RN VSWN
Sbjct: 69  SQITRETTGRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWN 128

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG--------- 277
            M+SG ++ G   + ++ FQ+M  LG+ P    +++++ AC ++G +   G         
Sbjct: 129 TMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAK 188

Query: 278 ---------------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                      ++F  + +++ V WT+++VGY+  G+ E+ + +
Sbjct: 189 SGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDI 248

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           +  M  E V  ++ S+S V+SSC  L     G+ + G+ +  G++  L V ++LI M+  
Sbjct: 249 YKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGN 308

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            G  D A  +FN +  R+ +SWNS++  YAQNG   E+  +++ + + + + +S T  ++
Sbjct: 309 MGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTL 368

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSL--DHYACMINLL-------GRSSDVDKAVD 481
           LS     D  + G+        +HG+   +  D   C+ N L       GRS + D    
Sbjct: 369 LSVLGDVDHQKWGR-------GIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADL--- 418

Query: 482 LIKSLPHKPNSLIWSTLLS 500
           + K +P K + + W++L++
Sbjct: 419 VFKQMPTK-DLISWNSLMA 436



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 175/395 (44%), Gaps = 52/395 (13%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDV-ELAKRLQSHMDLNFYEPNTTFLHNR 64
           K   A  TL   G +A       ++  C    D+ E  K L +++    +E +   + N 
Sbjct: 547 KALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDE-HVKNS 605

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YAK G L  ++DLF+ +  R II+WNA+L+A+                        
Sbjct: 606 LITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAAN------------------------ 641

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                  A+ G   E L++ S+M+        ++    L+A A+L  L  G+Q+HG  V 
Sbjct: 642 -------AHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK 694

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + F+ NA  DMY+K GEI +   +     NR+L SWN++IS   ++G  ++  + 
Sbjct: 695 LGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCET 754

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--------KDNVCWTTMIV 296
           F EM  +G+ P  VT  ++L AC   G +D     + +I +        +  +C   ++ 
Sbjct: 755 FHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLL- 813

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              ++G+  +A    ++M    ++P+     S+++SC     L  G+        L  +D
Sbjct: 814 --GRSGRLAEAETFISKM---PMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPED 868

Query: 357 D--LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           D   ++SS   +M+   G  +D   V   M  +N+
Sbjct: 869 DSVFVLSS---NMFATTGRWEDVENVRKQMGFKNI 900



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 1/166 (0%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +H   V   V   +L ++ LI+MY K G    A  +F+ MP RN VSWN+M++G  +
Sbjct: 77  GRALHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVR 136

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
            G  LE +  + K+    +KP SF   S+++AC  +    R         A  G+   + 
Sbjct: 137 VGLYLEGMEFFQKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVY 196

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
               +++L G    V  +  + + +P + N + W++L+   + KG+
Sbjct: 197 VSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSDKGE 241


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/643 (35%), Positives = 370/643 (57%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ H R G +     +FD++  +D++++N+ IAGF   G   EALQ F  +Q
Sbjct: 146 DVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQ 205

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P + + +S L A  +L  L  GK+IH   +   L  N+ + N L DMY+K   + 
Sbjct: 206 DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVA 265

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +FD+M N++L+SW  +I+ Y +N    + + L +++Q  G++ D + + + L AC 
Sbjct: 266 YAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACS 325

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                               G I+ A R+F  IK KD V WT+M
Sbjct: 326 GLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSM 385

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I  Y  NG   +AL +F  M    V PD  ++ S++S+ A L++L  G+ +HG     G 
Sbjct: 386 ISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGF 445

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +    ++L+DMY  CG  ++A+ VF    ++++V W +MIN Y  +G+   A+ L+  
Sbjct: 446 MLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSI 505

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  + L PD  TF+++L AC H+ L   G+   +++   + + P  +HYAC+++LLGR++
Sbjct: 506 MEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRAN 565

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   +KS+  +P + +W   L  C +  + K GE+AA+ L +L+P + G Y+++SN
Sbjct: 566 HLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISN 625

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           ++AA GRW+DV  +R  MK   +KK    SWIE+ NKVH F+  D++HPE+  IY++L++
Sbjct: 626 VFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQ 685

Query: 595 LIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           + +KL+ E G+ P TKLVLH+  +EEKV+ +  HSE+LA+AY L+    G TPIRI KN+
Sbjct: 686 ITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEG-TPIRITKNL 744

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH F K  S    R +I+RD++RFHHF  G CSC D W
Sbjct: 745 RVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 153/563 (27%), Positives = 256/563 (45%), Gaps = 105/563 (18%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR-DII 91
           C  V D+     +   +    Y+ +  F+ N L+  YAK   +  AR LFD+M  R D++
Sbjct: 20  CGVVEDIHRGAEIHGLIIKCGYD-SIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVV 78

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SWN+++SA++ +G                                  EAL +F  MQK  
Sbjct: 79  SWNSIISAYSLNGQCM-------------------------------EALGLFREMQKAG 107

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
                YT V+AL AC      + G +IH  I+  N   +V+V NAL  M+ + G++  A 
Sbjct: 108 VGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAA 167

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD ++ ++ ++WN MI+G+ +NG   + +  F  +Q   L PDEV++ +IL A  + G
Sbjct: 168 RIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLG 227

Query: 272 ---------------------RIDD--------------AGRLFHVIKEKDNVCWTTMIV 296
                                RI +              AG +F  +  KD + WTT+I 
Sbjct: 228 YLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIA 287

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y QN    +AL L  ++ ++ +  D   I S + +C+ L  L H + VHG  +  G+  
Sbjct: 288 AYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGL-S 346

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           DL++ + +ID+Y  CG  + A  +F  +  ++VVSW SMI+ Y  NG   EAL ++  + 
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMK 406

Query: 417 QENLKPDSFTFVSVLSAC-----------LHADLFERG----QNHFDSISAVHGITPSLD 461
           + +++PDS T VS+LSA            +H  +F +G     +  +S+  ++    SL+
Sbjct: 407 ETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLE 466

Query: 462 H---------------YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCA 503
           +               +  MIN  G       AV+L   +  +   P+ + +  LL  C+
Sbjct: 467 NAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACS 526

Query: 504 MKGDIKHGEMAARHL---FELEP 523
             G I  G+     +   ++LEP
Sbjct: 527 HSGLINEGKRLLETMKCKYQLEP 549



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 192/389 (49%), Gaps = 50/389 (12%)

Query: 154 PTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P D +T    L AC  + D+ RG +IHG I+       VFV N+L  MYAK  +I  AR 
Sbjct: 7   PFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARK 66

Query: 213 LFDRMNNRN-LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
           LFDRMN RN +VSWN +IS Y  NGQ  + + LF+EMQ  G+  +  T+   L AC    
Sbjct: 67  LFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSS 126

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G++  A R+F  + EKDN+ W +MI 
Sbjct: 127 FKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIA 186

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G+TQNG   +AL  F  +   +++PD+ S+ S++++  +L  L +G+ +H  A+   +D 
Sbjct: 187 GFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDS 246

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +L + + LIDMY KC     A  VF+ M  ++++SW ++I  YAQN    EAL L  K+ 
Sbjct: 247 NLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQ 306

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT-----PSLDHYACMINLLG 471
            + +  D+    S L AC        G         VHG T       L     +I++  
Sbjct: 307 TKGMDVDTMMIGSTLLAC-------SGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYA 359

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
              +++ A  + +S+  K + + W++++S
Sbjct: 360 DCGNINYATRMFESIKCK-DVVSWTSMIS 387



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 123/255 (48%), Gaps = 17/255 (6%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D F+   V+ +C  +  ++ G  +HG  +  G D  + V+++L+ MY KC     A  +F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 382 NMMPTRN-VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           + M  RN VVSWNS+I+ Y+ NGQ +EAL L+ ++ +  +  +++T V+ L AC  +   
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFK 128

Query: 441 ERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           + G     +I   + +   LD Y    ++ +  R   +  A  +   L  K N + W+++
Sbjct: 129 KLGMEIHAAILKSNQV---LDVYVANALVAMHVRFGKMSYAARIFDELDEKDN-ITWNSM 184

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           ++     G       A +    L+  N  P  + L ++ AA GR      +   +  K +
Sbjct: 185 IAGFTQNGLYNE---ALQFFCGLQDANLKPDEVSLISILAASGR------LGYLLNGKEI 235

Query: 558 KKFAAYSWIEIDNKV 572
             +A  +W++ + ++
Sbjct: 236 HAYAMKNWLDSNLRI 250


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/638 (36%), Positives = 361/638 (56%), Gaps = 32/638 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   +AL+   AR+G +   R +FD +  +  V +   I+ +     + EA+++F    
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG--- 205
           +D FEP  YT  S ++AC +L  +R G Q+H   +      +  V   L DMYAK     
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            +D A  +F+RM   +++SW  +ISGY+++G Q  K + LF EM    + P+ +T S+IL
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 265 GACFQTGRIDDAGRLFH--VIKEKDNVCWTT---MIVGYTQNGKEEDALILFNEMLSE-- 317
            AC       D+GR  H  VIK       T    ++  Y ++G  E+A  +FN++     
Sbjct: 367 KACANISD-HDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 318 -------------------DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
                              D+     + +S++S+ A +  L  GQ +H   +  G   D 
Sbjct: 426 ISCITEGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDR 485

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS++L+ MY +CG  +DA   FN +  RNV+SW SMI+G A++G    AL+L+  ++  
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +KP+  T+++VLSAC H  L   G+ +F S+   HG+ P ++HYACM++LL RS  V +
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKE 605

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A++ I  +P K ++L+W TLL  C    +I+ GE+AA+++ ELEP +  PY++LSN+YA 
Sbjct: 606 ALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYAD 665

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W++VA IRS+M+  N+ K    SW+E++N  H+F + D +HP  + IY +L  L+ +
Sbjct: 666 AGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGE 725

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P+T +VLHD  +E K + +  HSEK+A+A+ LI       PIRI KN+RVC D
Sbjct: 726 IKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTS-APKPIRIFKNLRVCAD 784

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K+ S    R IILRDSNRFH    G CSC + W
Sbjct: 785 CHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  Y++ G L  A   F+++  R++ISW +++S  A+ G  +   +LF  M + 
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
               + V+Y   ++  ++ G  RE  + F  MQ+D
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRD 580


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 379/676 (56%), Gaps = 69/676 (10%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  +    TR N ++L ++  + + L+  +PN  FL  +++  YA SG L  A  +FD+
Sbjct: 79  SYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNA-FLAAKMVAMYASSGDLDSAVVVFDR 137

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +     + +N+++ A+ R G                                    L+ +
Sbjct: 138 IDNPSSLLYNSIIRAYTRHGXXXX----------------------------XXXXLEAY 169

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           +RM        ++T    L +CA L  +  G+ +HG+ +   L G+ +V  +L DMY K 
Sbjct: 170 ARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKC 229

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G I  AR LFD+M  R++ SWN +I+GY+K G+     DLF+ M+               
Sbjct: 230 GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME--------------- 274

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE--DVRPD 322
                                ++ V WT MI GYTQNG  E AL LF+EML +  +++P+
Sbjct: 275 --------------------HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPN 314

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +I SV+ +CA+ A+L  G+ +H  A  +G+  +  V +AL  MY KC    +A   F+
Sbjct: 315 WVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFD 374

Query: 383 MMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           M+    +N+++WN+MI  YA +G  +EA+++++ +L+  ++PD+ TF+ +LS C H+ L 
Sbjct: 375 MIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLI 434

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G NHF+ +  +H + P ++HYAC+++LLGR+  + +A +LI  +P +    +W  LL+
Sbjct: 435 DAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLA 494

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C    +++  E+AAR LF LEP N+G Y++LSN+YA  G WE+V  +R+ +K + +KK 
Sbjct: 495 ACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKS 554

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SWIEI+ K H F+  D++HP+ + IY+ L  L +K++ AG+ P+T  VLHD  EEEK
Sbjct: 555 PGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEK 614

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
             ++  HSEKLA+A+ L+    GV  +R+ KN+R+CGDCH   KF S I  R II+RD N
Sbjct: 615 EYNLTTHSEKLAIAFGLLNTRPGVV-LRVTKNLRICGDCHAATKFISKIYEREIIVRDLN 673

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G+CSC D W
Sbjct: 674 RFHCFKDGSCSCGDYW 689


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/509 (41%), Positives = 313/509 (61%), Gaps = 36/509 (7%)

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA--------------CF 268
           VSWN +I G ++ G  +  +  FQ+M+   +  DE T+ ++L +              C 
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G++D A  +F  + +KD V WT+++ GY+ NG  E+A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + LF +M    V PD+ +++SV+S+CA+L  +  GQ +H   V  G++  L V ++L+ M
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG   DA   F+ MPTR+V+SW ++I GYAQNG+   +L  YD+++    KPD  TF
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           + +L AC H  L   G+ +F+++  V+GI P  +HYACMI+LLGRS  + +A  L+  + 
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
             P++++W  LL+ C +  +++ GEMAA++LFELEP+N+ PY+MLSNMY+A G+WED A 
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           IR  M+S+ + K   YSWIE ++KV  F+SEDR HP    IY ++ ++I  ++EAG+ P+
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPD 426

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
               LHDT +E K   + YHSEKLA+A+ L+  P G  PIRI KN+RVCGDCH  MK+ S
Sbjct: 427 MSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQG-APIRIFKNLRVCGDCHTAMKYTS 485

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +  R IILRDSN FHHF  G CSC D W
Sbjct: 486 KVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 172/360 (47%), Gaps = 69/360 (19%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           M   D VS+N+ I G   +GF  +AL  F +M+    +  +YT  S LN+ A +  ++  
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNA 60

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             +H  I+         V NAL DMYAK G++D A  +F +M ++++VSW  +++GY  N
Sbjct: 61  ISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHN 120

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ-------------------------- 269
           G  ++ I LF +M++ G+ PD++ V+++L AC +                          
Sbjct: 121 GSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 270 ---------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                     G I DA R F  +  +D + WT +IVGY QNG+ + +L  +++M++   +
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTK 240

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD  +   ++ +C+     ++G +  G+A    +D                        V
Sbjct: 241 PDYITFIGLLFACS-----HNGLLGSGRAYFEAMD-----------------------KV 272

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADL 439
           + + P      +  MI+   ++G+  EA  L ++++   + PD+  + ++L+AC +H +L
Sbjct: 273 YGIKPGPE--HYACMIDLLGRSGKLAEAKGLLNQMV---VAPDAVVWKALLAACRVHKEL 327



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 146/301 (48%), Gaps = 9/301 (2%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+  +A+ G +     +F KM  +D VS+ + + G+++ G   EA+++F +M+     
Sbjct: 80  NALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVY 139

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P      S L+ACA+L  +  G+QIH  +V   L  ++ V N+L  MYAK G I  A   
Sbjct: 140 PDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRA 199

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R+++SW  +I GY +NG+ K  +  + +M   G  PD +T   +L AC   G +
Sbjct: 200 FDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLL 259

Query: 274 DDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
                 F  + +   +      +  MI    ++GK  +A  L N+M+   V PD     +
Sbjct: 260 GSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV---VAPDAVVWKA 316

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++++C     L  G++       L   + +     L +MY   G  +DA  +  +M +R 
Sbjct: 317 LLAACRVHKELELGEMAAKNLFELEPMNSMPY-VMLSNMYSAAGKWEDAARIRRLMRSRG 375

Query: 389 V 389
           +
Sbjct: 376 I 376



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W ++I+G  + G EEDAL  F +M S D++ D++++ SV++S A +  + +   VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              +  G +   LV++ALIDMY K G  D A  VF+ M  ++VVSW S++ GY+ NG   
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA+ L+ K+    + PD     SVLSAC    + + GQ    +     G+  SL     +
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQ-QIHATLVKSGLESSLSVDNSL 183

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           + +  +   +  A     ++P + + + W+ L+   A  G  KH
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGRGKH 226


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/665 (36%), Positives = 366/665 (55%), Gaps = 63/665 (9%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            NAL++ +AR G V D +ALF     +D VS+NT I+  +      EAL     M  D   
Sbjct: 472  NALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVR 531

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T  S L AC+QL  LR G++IH   +  G+L  N FV  AL DMY    +  K R 
Sbjct: 532  PDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRL 591

Query: 213  LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQ-- 269
            +FD +  R +  WN +++GY +N    + + LF EM       P+  T +++L AC +  
Sbjct: 592  VFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCK 651

Query: 270  ---------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                              GR++ +  +F  + ++D V W TMI 
Sbjct: 652  VFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMIT 711

Query: 297  GYTQNGKEEDALILFNEML---SED---------------VRPDKFSISSVVSSCAKLAS 338
            G    G+ +DAL L +EM     ED                +P+  ++ +V+  CA LA+
Sbjct: 712  GCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAA 771

Query: 339  LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
            L  G+ +H  AV   +  D+ V SAL+DMY KCG  + A  VF+ MP RNV++WN +I  
Sbjct: 772  LGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMA 831

Query: 399  YAQNGQDLEALALYDKLL------QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            Y  +G+  EAL L+  +       +E ++P+  T++++ +AC H+ + + G + F ++ A
Sbjct: 832  YGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKA 891

Query: 453  VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHG 511
             HG+ P  DHYAC+++LLGRS  V +A +LI ++P   N +  WS+LL  C +   ++ G
Sbjct: 892  SHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFG 951

Query: 512  EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
            E+AA+HLF LEP  A  Y+++SN+Y++ G W+    +R  MK   V+K    SWIE  ++
Sbjct: 952  EIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDE 1011

Query: 572  VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
            VHKF+S D +HP+++ ++E L  L +++++ G+ P+   VLH+  +EEK   +C HSE+L
Sbjct: 1012 VHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERL 1071

Query: 632  ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
            A+A+ L+  P G T IR+ KN+RVC DCH+  K  S I+ R IILRD  RFHHF  G CS
Sbjct: 1072 AIAFGLLNTPPGTT-IRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCS 1130

Query: 692  CKDNW 696
            C D W
Sbjct: 1131 CGDYW 1135



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/540 (24%), Positives = 244/540 (45%), Gaps = 93/540 (17%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           A+  ++     V+D+ L K++ +H+       P++  + N L++ Y K G L  AR +FD
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFD 391

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            +P RD +SWN++++   R          F++  +                     +L +
Sbjct: 392 DIPDRDHVSWNSMIATLCR----------FEEWEL---------------------SLHL 420

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLL-DLRRGKQIHGKIVV-GNLGGNVFVRNALTDMY 201
           F  M  +  +PT +T VS  +AC+ +   +R GKQ+H   +  G+L    +  NAL  MY
Sbjct: 421 FRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDL--RTYTNNALVTMY 478

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           A+ G ++ A+ LF   + ++LVSWN +IS   +N + ++ +     M + G+ PD VT++
Sbjct: 479 ARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLA 538

Query: 262 NILGACFQTGRI-----------------------------------DDAGRL-FHVIKE 285
           ++L AC Q  R+                                      GRL F  +  
Sbjct: 539 SVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVR 598

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQV 344
           +    W  ++ GY +N  ++ AL LF EM+SE +  P+  + +SV+ +C +       + 
Sbjct: 599 RTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEG 658

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  V  G   D  V +AL+DMY + G  + + T+F  M  R++VSWN+MI G    G+
Sbjct: 659 IHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGR 718

Query: 405 DLEALALYDKLLQEN------------------LKPDSFTFVSVLSACLHADLFERGQNH 446
             +AL L  ++ +                     KP+S T ++VL  C       +G+  
Sbjct: 719 YDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKE- 777

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             + +    +   +   + ++++  +   ++ A  +   +P + N + W+ L+    M G
Sbjct: 778 IHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIR-NVITWNVLIMAYGMHG 836



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 229/513 (44%), Gaps = 95/513 (18%)

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNL-GGNVFVRN 195
           R+A+  ++ M      P ++   + L A A + DL  GKQIH  +   G+    +V V N
Sbjct: 312 RDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVAN 371

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           +L +MY K G++  AR +FD + +R+ VSWN MI+   +  + +  + LF+ M    ++P
Sbjct: 372 SLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDP 431

Query: 256 DEVTVSNILGACFQT-----------------------------------GRIDDAGRLF 280
              T+ ++  AC                                      GR++DA  LF
Sbjct: 432 TSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNGDLRTYTNNALVTMYARLGRVNDAKALF 491

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            V   KD V W T+I   +QN + E+AL+    M+ + VRPD  +++SV+ +C++L  L 
Sbjct: 492 GVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLR 551

Query: 341 HGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            G+ +H  A+  G + ++  V +AL+DMYC C        VF+ +  R V  WN+++ GY
Sbjct: 552 IGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGY 611

Query: 400 AQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSAC-----------LHADLFERG---- 443
           A+N  D +AL L+ +++ E+   P++ TF SVL AC           +H  + +RG    
Sbjct: 612 ARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKD 671

Query: 444 --------------------------QNHFDSISAVHGITPSL--DHYACMINLL----- 470
                                      N  D +S    IT  +    Y   +NLL     
Sbjct: 672 KYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQR 731

Query: 471 -----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPI 524
                G  + VD   D    +P KPNS+   T+L  CA    +  G E+ A  + +   +
Sbjct: 732 RQGEDGSDTFVDYEDD--GGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAM 789

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           +      L +MYA CG     + +   M  +NV
Sbjct: 790 DVAVGSALVDMYAKCGCLNLASRVFDQMPIRNV 822



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 188/403 (46%), Gaps = 48/403 (11%)

Query: 60   FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            ++ N L+  Y++ G++  ++ +F +M  RDI+SWN +++     G   D   L  +M  R
Sbjct: 673  YVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRR 732

Query: 120  DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                 +     + + G                F+P   T ++ L  CA L  L +GK+IH
Sbjct: 733  QGEDGSDTFVDYEDDG-------------GVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779

Query: 180  GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
               V   L  +V V +AL DMYAK G ++ A  +FD+M  RN+++WN++I  Y  +G+ +
Sbjct: 780  AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGE 839

Query: 240  KCIDLFQEMQLLG------LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV---- 289
            + ++LF+ M   G      + P+EVT   I  AC  +G +D+   LFH +K    V    
Sbjct: 840  EALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRG 899

Query: 290  -CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
              +  ++    ++G+ ++A  L N M S   + D +  SS++ +C    S+  G++    
Sbjct: 900  DHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAW--SSLLGACRIHQSVEFGEIAAKH 957

Query: 349  AVVLGVDDDLLVSSALI---DMYCKCGVTDDAWTVFNMMPTRNV-----VSW-------N 393
              VL  +    V+S  +   ++Y   G+ D A  V   M    V      SW       +
Sbjct: 958  LFVLEPN----VASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVH 1013

Query: 394  SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
              ++G A + Q  E L  Y + L + ++ +   +V  +S  LH
Sbjct: 1014 KFLSGDASHPQSKE-LHEYLETLSQRMRKEG--YVPDISCVLH 1053



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 2/148 (1%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  ++   T +    DA+  +  ML+    PD F+  +V+ + A +  L  G+ +H    
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 351 VLG--VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
             G      + V+++L++MY KCG    A  VF+ +P R+ VSWNSMI    +  +   +
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLH 436
           L L+  +L EN+ P SFT VSV  AC H
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSH 445


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/708 (33%), Positives = 388/708 (54%), Gaps = 69/708 (9%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A   ++    +   +   K+L + +    Y P  TFL N L++ Y+K G+L +A  LFD 
Sbjct: 7   ALAHVIQTYAKTKRLRRGKQLHALLICAGYTP-CTFLTNHLVNMYSKCGELDHALKLFDT 65

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP R+++SW A++S  ++                              N  FS EA++ F
Sbjct: 66  MPQRNLVSWTAMISGLSQ------------------------------NSKFS-EAIRTF 94

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M+     PT +   SA+ ACA L  +  GKQ+H   +   +G  +FV + L DMY+K 
Sbjct: 95  CGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKC 154

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  A  +F+ M  ++ VSW  MI GY K G+ ++ +  F++M    +  D+  + + L
Sbjct: 155 GAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 265 GAC--------------------FQT---------------GRIDDAGRLFHVIKEKDNV 289
           GAC                    F++               G ++ A  +F +  E  NV
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 290 C-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
             +T +I GY +  + E  L +F E+  + + P++F+ SS++ +CA  A+L  G  +H +
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            + +  D+D  VSS L+DMY KCG+ + A   F+ +     ++WNS+++ + Q+G   +A
Sbjct: 335 VMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           +  +++++   +KP++ TF+S+L+ C HA L E G ++F S+   +G+ P  +HY+C+I+
Sbjct: 395 IKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+  + +A + I  +P +PN+  W + L  C + GD + G++AA  L +LEP N+G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
            ++LSN+YA   +WEDV S+R  M+  NVKK   YSW+++  K H F +ED +H     I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAI 574

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           YE+L  L+ +++ AG+ P T  V  D  +  K K +  HSE++A+A+ LI  P G  PI 
Sbjct: 575 YEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVAFALISMPIG-KPII 633

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVC DCH  +KF S + GR II+RD++RFHHF  G+CSC D W
Sbjct: 634 VKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDYW 681



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 198/468 (42%), Gaps = 75/468 (16%)

Query: 6   KLRQAIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K  +AI T       G+  T+ A++  +  C  +  +E+ K++   + L F   +  F+ 
Sbjct: 86  KFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC-LALKFGIGSELFVG 144

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + L   Y+K G +F                               D   +F++MP +D V
Sbjct: 145 SNLEDMYSKCGAMF-------------------------------DACKVFEEMPCKDEV 173

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   I G++  G   EAL  F +M  +      +   S L AC  L   + G+ +H  +
Sbjct: 174 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 233

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKC 241
           V      ++FV NALTDMY+K G+++ A  +F   +  RN+VS+  +I GY++  Q +K 
Sbjct: 234 VKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 293

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           + +F E++  G+ P+E T S+++ AC                                  
Sbjct: 294 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 353

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G ++ A + F  I +   + W +++  + Q+G  +DA+  F  M+   V+P+  + 
Sbjct: 354 YGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF 413

Query: 327 SSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S+++ C+    +  G    +      GV       S +ID+  + G   +A    N MP
Sbjct: 414 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 473

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              N   W S +     +G         +KL++  L+P +   + +LS
Sbjct: 474 FEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGALVLLS 519



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/310 (23%), Positives = 137/310 (44%), Gaps = 29/310 (9%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +++ V+ + AK   L  G+ +H   +  G      +++ L++MY KCG  D A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + MP RN+VSW +MI+G +QN +  EA+  +  +      P  F F S + AC      E
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G+     ++   GI   L   + + ++  +   +  A  + + +P K + + W+ ++  
Sbjct: 124 MGK-QMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED----------------- 544
            +  G+ +   +A + + + E +    +++ S +  ACG  +                  
Sbjct: 182 YSKIGEFEEALLAFKKMID-EEVTIDQHVLCSTL-GACGALKACKFGRSVHSSVVKLGFE 239

Query: 545 ----VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED---RTHPETEIIYEELSKLIK 597
               V +  + M SK     +A +   ID++    VS       + ETE I + LS  + 
Sbjct: 240 SDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFV- 298

Query: 598 KLQEAGFSPN 607
           +L+  G  PN
Sbjct: 299 ELRRQGIEPN 308


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/680 (35%), Positives = 382/680 (56%), Gaps = 74/680 (10%)

Query: 89  DIISWNALLSAHARSG--SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           D  S + L++A A S   S+   + +FD++P  +  ++NT I  +A+     ++L +F R
Sbjct: 66  DPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLR 125

Query: 147 M--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           M  Q   F P  +T    + A ++L +L  GK  HG ++   LG +VF+ N+L   YAK 
Sbjct: 126 MLHQSPDF-PDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKC 184

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           GE+     +F  +  R++VSWN MI+ +++ G P++ ++LFQEM+   + P+ +T+  +L
Sbjct: 185 GELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVL 244

Query: 265 GAC-----FQTGR------------------------------IDDAGRLFHVIKEKDNV 289
            AC     F+ GR                              ++DA RLF  + EKD V
Sbjct: 245 SACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIV 304

Query: 290 CWTTMIVGYT-------------------------------QNGKEEDALILFNEM-LSE 317
            WTTM+VGY                                Q GK ++AL LF+E+ LS+
Sbjct: 305 SWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSK 364

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
             +PD+ ++ S +S+CA+L ++  G  +H      G+  +  ++++LIDMYCKCG    A
Sbjct: 365 TAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKA 424

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             VF+ +  ++V  W++MI G A +G   +A+AL+ K+ ++ +KP++ TF ++L AC H 
Sbjct: 425 LMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHV 484

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L E G+  F+ +  V+G+ P + HYACM+++LGR+  +++AV+LI+ +P  P + +W  
Sbjct: 485 GLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGA 544

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           LL  C +  ++   E A   L ELEP N G Y++LSN+YA  G+W+ V+ +R  M+   +
Sbjct: 545 LLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGL 604

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
           KK    S IE+D  VH+F+  D +HP  + IY +L +++ +L+  G+ PN   +L   +E
Sbjct: 605 KKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEE 664

Query: 618 EE-KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           E+ K +++  HSEKLA+A+ LI       PIRI+KN+RVCGDCH   K  S +  R I+L
Sbjct: 665 EDVKEQALFLHSEKLAIAFGLISTGQS-QPIRIVKNLRVCGDCHSVAKLVSKLYDREILL 723

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G+CSC D W
Sbjct: 724 RDRYRFHHFREGHCSCMDYW 743



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 181/409 (44%), Gaps = 100/409 (24%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N L+HFYAK G+L     +F  +P RD++SWN++++A                   
Sbjct: 171 VFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITA------------------- 211

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                       F   G   EAL++F  M+    +P   T V  L+ACA+  D   G+ +
Sbjct: 212 ------------FVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWV 259

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ- 237
           H  I    +G ++ + NA+ DMY K G ++ A+ LFD+M  +++VSW  M+ GY K G+ 
Sbjct: 260 HSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEY 319

Query: 238 ------------------------------PKKCIDLFQEMQLLGL-NPDEVTVSNILGA 266
                                         PK+ ++LF E+QL     PDEVT+ + L A
Sbjct: 320 DAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSA 379

Query: 267 CFQTGRIDDAG-----------------------------------RLFHVIKEKDNVCW 291
           C Q G +D  G                                    +FH ++ KD   W
Sbjct: 380 CAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVW 439

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK-AV 350
           + MI G   +G  +DA+ LF++M  + V+P+  + ++++ +C+ +  +  G+    +  +
Sbjct: 440 SAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 499

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           V GV   +   + ++D+  + G+ ++A  +   MP     S W +++  
Sbjct: 500 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 548



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/249 (34%), Positives = 138/249 (55%), Gaps = 3/249 (1%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C + +D E  + + S+++ N    + T L N +L  Y K G +  A+ LFDKMP +DI+S
Sbjct: 247 CAKKSDFEFGRWVHSYIERNRIGESLT-LSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVS 305

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W  +L  +A+ G     + +FD MP +D  ++N  I+ +   G  +EAL++F  +Q  + 
Sbjct: 306 WTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKT 365

Query: 153 -EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +P + T VS L+ACAQL  +  G  IH  I    +  N  +  +L DMY K G++ KA 
Sbjct: 366 AKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKAL 425

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F  +  +++  W+ MI+G   +G  K  I LF +MQ   + P+ VT +NIL AC   G
Sbjct: 426 MVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVG 485

Query: 272 RIDDAGRLF 280
            +++ GR F
Sbjct: 486 LVEE-GRTF 493



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 161/328 (49%), Gaps = 13/328 (3%)

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG--RIDDAGRLFHVIKEKDNVCWTTM 294
           + K+   +  +M   GL  D  + S ++ A   +    +D A ++F  I   +   W T+
Sbjct: 47  ETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTL 106

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           I  Y  +     +L++F  ML +    PDKF+   ++ + ++L  L+ G+  HG  + + 
Sbjct: 107 IRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVL 166

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+ + ++LI  Y KCG     + VF  +P R+VVSWNSMI  + Q G   EAL L+ 
Sbjct: 167 LGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQ 226

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++  +N+KP+  T V VLSAC     FE G+     I   + I  SL     M+++  + 
Sbjct: 227 EMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER-NRIGESLTLSNAMLDMYTKC 285

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEP-INAGPYIM 531
             V+ A  L   +P K + + W+T+L      G  K GE  AA+ +F+  P  +   +  
Sbjct: 286 GSVEDAKRLFDKMPEK-DIVSWTTMLV-----GYAKIGEYDAAQGIFDAMPNQDIAAWNA 339

Query: 532 LSNMYAACGRWEDVASIRSSMK-SKNVK 558
           L + Y  CG+ ++   +   ++ SK  K
Sbjct: 340 LISAYEQCGKPKEALELFHELQLSKTAK 367


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/643 (38%), Positives = 370/643 (57%), Gaps = 42/643 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ +A+ G++     +F  +  RD VS+NT I+     GF   A+  +  M++    
Sbjct: 414  NGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCIS 473

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P+++  +S L++CA L  L  G+Q+H   V   L  +  V NAL  MY   G   ++  +
Sbjct: 474  PSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEI 533

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPK-KCIDLFQEMQLLGLNPDEVTVSNILGA------ 266
            F+ M   ++VSWN ++   + +  P  + +++F  M   GL P++VT  N+L A      
Sbjct: 534  FNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSV 593

Query: 267  ----------------------------CF-QTGRIDDAGRLFHVIK-EKDNVCWTTMIV 296
                                        C+ ++G +D   +LF  +   +D V W +MI 
Sbjct: 594  LELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMIS 653

Query: 297  GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            GY  NG  ++ +     M+  +   D  + S V+++CA +A+L  G  +H   +   ++ 
Sbjct: 654  GYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLES 713

Query: 357  DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            D++V SAL+DMY KCG  D A  VFN M  +N  SWNSMI+GYA++G   +AL +++++ 
Sbjct: 714  DVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQ 773

Query: 417  QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
            +    PD  TFVSVLSAC HA L +RG ++F+ +   HGI P ++HY+C+I+LLGR+  +
Sbjct: 774  RNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMED-HGILPHIEHYSCVIDLLGRAGKL 832

Query: 477  DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLS 533
             K  + I  +P KPN+LIW T+L  C    D   I  G+ A+R L ELEP N   Y++ S
Sbjct: 833  LKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLAS 892

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            N YAA GRWED A  R++M    +KK A  SW+ + + VH F++ DR+HP T+ IYE+L+
Sbjct: 893  NFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEKLN 952

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             LI+K++ AG+ P T+  L+D +EE K + + YHSEKLA+A+ L +    V PIRIMKN+
Sbjct: 953  FLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDV-PIRIMKNL 1011

Query: 654  RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            RVCGDCH   ++ S I+ R IILRDS RFHHF  G CSC D W
Sbjct: 1012 RVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 172/697 (24%), Positives = 294/697 (42%), Gaps = 151/697 (21%)

Query: 41  LAKRLQSH--MDLNFYEPNTTFLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNAL 96
           LA  +Q H  +    Y  NTT   N L+  Y     G    A+ +FD  P+RD+I+WNAL
Sbjct: 178 LAFAVQVHGLVSKTIYASNTTVC-NALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNAL 236

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           +S +A+ G V     LF  M   DS     AI                         P +
Sbjct: 237 MSVYAKKGYVVSTFTLFMAMLHDDS-----AI----------------------ELRPNE 269

Query: 157 YTH-----VSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           +T       ++L++C+  +LD     Q+  +++      +++V +AL   +A+ G +D+A
Sbjct: 270 HTFGSLITATSLSSCSSGVLD-----QVFARVLKSGSSSDLYVGSALVSAFARHGMLDEA 324

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ------------LL------- 251
           + +F  +  RN V+ N +I G +K    ++ + +F   +            LL       
Sbjct: 325 KDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLLSAVAEFS 384

Query: 252 -------------------GLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCW 291
                              GL   ++ +SN L   + + G ID A R+F ++  +D V W
Sbjct: 385 IPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSW 444

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            T+I    QNG  E A++ +  M    + P  F+  S +SSCA L  L  GQ VH  AV 
Sbjct: 445 NTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVK 504

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS----MINGYAQNGQDLE 407
            G+D D  VS+AL+ MY  CG   ++W +FN M   ++VSWNS    M++ +A   + +E
Sbjct: 505 WGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVE 564

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
              ++  +++  L P+  TFV++LSA     + E G+    ++   HG          ++
Sbjct: 565 ---VFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGK-QVHAVVLKHGAIEDNAVDNALM 620

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS--------------------------- 500
           +   +S D+D    L  S+  + +++ W++++S                           
Sbjct: 621 SCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDC 680

Query: 501 --------VCAMKGDIKHG-EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
                    CA    ++ G EM A  +      +      L +MY+ CGR +  + + +S
Sbjct: 681 CTFSIVLNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNS 740

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
           M  KN      +SW       +  +S    H     + E+  ++ +++Q  G  P     
Sbjct: 741 MSQKN-----EFSW-------NSMISGYARHG----LGEKALEIFEEMQRNGACP----- 779

Query: 612 LHDTQEEEKVKSICYHSEKL--ALAYCLIKKPHGVTP 646
             D      V S C H+  +   L Y  + + HG+ P
Sbjct: 780 --DHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILP 814



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 133/466 (28%), Positives = 198/466 (42%), Gaps = 96/466 (20%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           +EL KR  +H DL        FL N L++ YAK  +L  AR +FD M  R+ +SW  L+S
Sbjct: 80  LELVKRGLTH-DL--------FLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVS 130

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE---PT 155
                                          G+   G + EA +VF  M  +  E   PT
Sbjct: 131 -------------------------------GYVLSGITDEAFRVFKAMLWEGSEFSRPT 159

Query: 156 DYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG--GEIDKAR 211
            +T  S L AC       L    Q+HG +       N  V NAL  MY     G   +A+
Sbjct: 160 PFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQ 219

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM----QLLGLNPDEVTV------- 260
            +FD    R+L++WN ++S Y K G       LF  M      + L P+E T        
Sbjct: 220 QVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITAT 279

Query: 261 -----------------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
                                        S ++ A  + G +D+A  +F  +KE++ V  
Sbjct: 280 SLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTL 339

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSED---VRPDKFSI--SSVVSSCAKLASLYHGQVVH 346
             +IVG  +    E+A+ +F  M + D   V  D F +  S+V         L  G+ VH
Sbjct: 340 NGLIVGLVKQHCSEEAVGIF--MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVH 397

Query: 347 GKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           G  +  G +D  + +S+ L++MY KCG  D A  VF ++  R+ VSWN++I+   QNG  
Sbjct: 398 GHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFC 457

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSI 450
             A+  Y  + Q  + P +F  +S LS+C    L   GQ  H D++
Sbjct: 458 EGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAV 503



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 60/397 (15%)

Query: 167 AQLLDLRRGKQ-----IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           A LL  RRG++     +H ++V   L  ++F+ N L ++YAKG  +  AR +FD M  RN
Sbjct: 62  AGLLLPRRGEEAAPERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERN 121

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN---PDEVTVSNILGAC----------- 267
            VSW  ++SGY+ +G   +   +F+ M   G     P   T  ++L AC           
Sbjct: 122 AVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFA 181

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G    A ++F     +D + W  ++  Y 
Sbjct: 182 VQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYA 241

Query: 300 QNGKEEDALILFNEMLSED----VRPDKFSISSVVSSCAKLASLYHGQV--VHGKAVVLG 353
           + G       LF  ML +D    +RP++ +  S++++   L+S   G +  V  + +  G
Sbjct: 242 KKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITA-TSLSSCSSGVLDQVFARVLKSG 300

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              DL V SAL+  + + G+ D+A  +F  +  RN V+ N +I G  +     EA+ ++ 
Sbjct: 301 SSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFM 360

Query: 414 KLLQENLKPDSFTFVSVLSAC----LHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
              +++   ++ TFV +LSA     +  D   RG+     I     I   +     ++N+
Sbjct: 361 G-TRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNM 419

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +   +DKA  + + L  + + + W+T++SV    G
Sbjct: 420 YAKCGAIDKASRVFRLLCAR-DRVSWNTIISVLDQNG 455



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 96/192 (50%), Gaps = 7/192 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +ALL  +++ G +     +F+ M  ++  S+N+ I+G+A  G   +AL++F  MQ
Sbjct: 714 DVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQ 773

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P   T VS L+AC+    + RG      +    +  ++   + + D+  + G++ 
Sbjct: 774 RNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMMEDHGILPHIEHYSCVIDLLGRAGKLL 833

Query: 209 KARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDEVTVSNILG 265
           K +   +RM  + N + W  ++    ++    + IDL +E    LL L P    V+ +L 
Sbjct: 834 KIQEYINRMPMKPNTLIWRTVLVACRQSKDGDR-IDLGKEASRMLLELEPQN-PVNYVLA 891

Query: 266 ACF--QTGRIDD 275
           + F   TGR +D
Sbjct: 892 SNFYAATGRWED 903


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/666 (36%), Positives = 362/666 (54%), Gaps = 67/666 (10%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
            SA +RSG +    +LF+ +   +   +N+ I G +       AL  F RM     EP  
Sbjct: 70  FSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNS 129

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI--------- 207
           YT    L +CA+L     GKQIH  ++      +VF+  +L +MYA+ GE+         
Sbjct: 130 YTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQ 189

Query: 208 ----------------------DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
                                 D+AR LFD M  +++VSWN MI+GY + G+ K+ + LF
Sbjct: 190 SNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLF 249

Query: 246 QEMQLLGLNPDEVTVSNILGACFQT----------------------------------- 270
           ++M+   + P+E T+ ++L AC Q+                                   
Sbjct: 250 EDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 309

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +  A  LF  + E+D + W  MI GYT     ++AL LF EML+  V P + +  S++
Sbjct: 310 GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSIL 369

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            SCA L ++  G+ +H             +S++LID+Y KCG    A  VF+ M  +++ 
Sbjct: 370 PSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLA 429

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+MI G A +GQ  +A  L+ K+  + ++P+  TFV +LSAC HA L + GQ  F S+
Sbjct: 430 SWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSM 489

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              + I+P   HY CMI+LLGR+   ++A  L++++  KP+  IW +LL  C   G ++ 
Sbjct: 490 VQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVEL 549

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE+ A  LFELEP N G Y++LSN+YA  G+W+DVA IR+ +  + +KK    + IE+DN
Sbjct: 550 GELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDN 609

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH+F+  D+ HP++E IY  L ++ ++L+  GF  +T  VL+D  EE K  ++ +HSEK
Sbjct: 610 VVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEK 669

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ LI    G TPIRI+KN+RVC +CH   K  S I  R II RD NRFHHF  G+C
Sbjct: 670 LAIAFGLISTKPG-TPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSC 728

Query: 691 SCKDNW 696
           SC D W
Sbjct: 729 SCNDYW 734



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/457 (29%), Positives = 226/457 (49%), Gaps = 53/457 (11%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFY 69
           +  +YS G       +  L+  C ++      K++ +H + L F   +  F+H  L++ Y
Sbjct: 118 VRMIYS-GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV--SDVFIHTSLINMY 174

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           A+SG++  A+ +FD+   RD IS+ AL++ +A  G +   R LFD+MP++D VS+N  IA
Sbjct: 175 AQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIA 234

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+A  G S+EAL +F  M+K    P + T VS L+ACAQ   L  G  +   I    L  
Sbjct: 235 GYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCS 294

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           N+ + NAL DMY+K G++  AR LFD M  R+++SWN+MI GY      K+ + LF+EM 
Sbjct: 295 NLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREML 354

Query: 250 LLGLNPDEVTVSNILGACFQTGRID----------------------------------- 274
             G+ P E+T  +IL +C   G ID                                   
Sbjct: 355 ASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIV 414

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A ++F  +K K    W  MI G   +G+ + A  LF++M S+ + P++ +   ++S+C 
Sbjct: 415 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 474

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVF-NMMPTR 387
                + G V  G+     +  D  +S        +ID+  + G+ ++A ++  NM    
Sbjct: 475 -----HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKP 529

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           +   W S++     +G+      + ++L +  L+PD+
Sbjct: 530 DGAIWGSLLGACRDHGRVELGELVAERLFE--LEPDN 564



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 11/228 (4%)

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM--YCKCGVTDDAWTVFNMMPTRNVVS 391
           +K  S+   + +H   +  G+ + L   S LI+     + G    A ++FN +   N+  
Sbjct: 37  SKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFI 96

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSI 450
           WNSMI G + +     AL  + +++   ++P+S+TF  +L +C   A   E  Q H   +
Sbjct: 97  WNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVL 156

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
               G    +  +  +IN+  +S +++ A  L+    +  +++ ++ L++  A+ G +  
Sbjct: 157 KL--GFVSDVFIHTSLINMYAQSGEMNNA-QLVFDQSNFRDAISFTALIAGYALWGYMDR 213

Query: 511 GEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
               AR LF+  P+ +   +  +   YA  GR ++   +   M+  NV
Sbjct: 214 ----ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/701 (34%), Positives = 382/701 (54%), Gaps = 70/701 (9%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +V+  +L K +   + L        F+ N L+  Y +   + YAR +FDKM  RD++S
Sbjct: 104 CGQVSWTQLGKEIHGFV-LKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVS 162

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W+ ++ + +R                              NK F   AL++   M   + 
Sbjct: 163 WSTMIRSLSR------------------------------NKEFDM-ALELIREMNFMQV 191

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKGGEIDKA 210
            P++   VS +N  A   ++R GK +H  ++    N    V    AL DMYAK G +  A
Sbjct: 192 RPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLA 251

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
           R LF+ +  + +VSW  MI+G +++ + ++   LF  MQ   + P+E+T+ +++  C  T
Sbjct: 252 RQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFT 311

Query: 271 GR-----------------------------------IDDAGRLFHVIKEKDNVCWTTMI 295
           G                                    I +A  LF   + +D + WT M+
Sbjct: 312 GALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAML 371

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             Y Q    + A  LF++M +  VRP K +I S++S CA   +L  G+ VH       V+
Sbjct: 372 SAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVE 431

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D ++++AL+DMY KCG  + A  +F    +R++  WN++I G+A +G   EAL ++ ++
Sbjct: 432 VDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEM 491

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            ++ +KP+  TF+ +L AC HA L   G+  F+ +    G+ P ++HY CM++LLGR+  
Sbjct: 492 ERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGL 551

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A ++IKS+P KPN+++W  L++ C +  + + GE+AA  L E+EP N G  +++SN+
Sbjct: 552 LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNI 611

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YAA  RW D A +R +MK+  +KK   +S IE++  VH+F+  D++HP+   I E L+++
Sbjct: 612 YAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEM 671

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
            +KL EAG+ P+T  VL +  EEEK  ++ YHSEKLA+A+ LI      TPIRI+KN+RV
Sbjct: 672 RRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPS-TPIRIVKNLRV 730

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH   K  S I GR II+RD NRFHHF  G CSC D W
Sbjct: 731 CNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 192/410 (46%), Gaps = 42/410 (10%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           ++   S L AC Q+   + GK+IHG ++   L  +VFV NAL  MY +   ++ AR +FD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV----------------- 258
           +M  R++VSW+ MI    +N +    ++L +EM  + + P EV                 
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 259 --------------------TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                               T + +L    + G +  A +LF+ + +K  V WT MI G 
Sbjct: 214 GKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGC 273

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++ + E+   LF  M  E++ P++ ++ S++  C    +L  G+ +H   +  G    L
Sbjct: 274 IRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +++AL+DMY KC    +A  +F+    R+V+ W +M++ YAQ     +A  L+D++   
Sbjct: 334 ALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTS 393

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++P   T VS+LS C  A   + G+     I         + + A ++++  +  D++ 
Sbjct: 394 GVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTA-LVDMYAKCGDINA 452

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           A  L      + +  +W+ +++  AM G   +GE A     E+E     P
Sbjct: 453 AGRLFIEAISR-DICMWNAIITGFAMHG---YGEEALDIFAEMERQGVKP 498



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH--FYA--KSGKLFY 77
           T  ++T ++  C R N +E   +L   M      PN   + + ++   F    + GK  +
Sbjct: 262 TVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLH 321

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  L +   +   ++  AL+  + +   +++ RALFD    RD + +   ++ +A     
Sbjct: 322 AYILRNGFSVSLALA-TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCI 380

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +A  +F +M+     PT  T VS L+ CA    L  GK +H  I    +  +  +  AL
Sbjct: 381 DQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTAL 440

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMYAK G+I+ A  LF    +R++  WN +I+G+  +G  ++ +D+F EM+  G+ P++
Sbjct: 441 VDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPND 500

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           +T   +L AC   G + +  +LF
Sbjct: 501 ITFIGLLHACSHAGLVTEGKKLF 523



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 116/278 (41%), Gaps = 42/278 (15%)

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F   SV+ +C +++    G+ +HG  +  G+D D+ V +AL+ MY +C   + A  VF+ 
Sbjct: 95  FMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDK 154

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV-----------LS 432
           M  R+VVSW++MI   ++N +   AL L  ++    ++P     VS+           + 
Sbjct: 155 MMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYA------------------------CMIN 468
             +HA +     N    +      T  LD YA                         MI 
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTT---TALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 469 LLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPI 524
              RS+ +++   L   +  +   PN +   +L+  C   G ++ G ++ A  L     +
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           +      L +MY  C    +  ++  S ++++V  + A
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTA 369


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/624 (36%), Positives = 348/624 (55%), Gaps = 34/624 (5%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV-SALN 164
           V+D R +FD+MP +D++ +NT I+G+       E++QVF  +  +     D T +   L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           A A+L +LR G QIH          + +V      +Y+K G+I  A  LF      ++V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVA 289

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLG----------LNP------------------- 255
           +N MI GY  NG+ +  + LF+E+ L G          L P                   
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSN 349

Query: 256 --DEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                +VS  L   + +   I+ A +LF    EK    W  MI GYTQNG  EDA+ LF 
Sbjct: 350 FLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           EM + +  P+  +I+ ++S+CA+L +L  G+ VH        +  + VS+ALI MY KCG
Sbjct: 410 EMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              +A  +F+ MP +N V+WN+MI+GY  +G   EAL ++ ++L   + P   TF+ VL 
Sbjct: 470 SIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLY 529

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L + G   F+S+   +G  PS+ HYAC++++LGR+  + +A+  I+++P +P  
Sbjct: 530 ACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGP 589

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            +W TLL  C +  D       +  LFEL+P N G +++LSN+++A   +   A++R + 
Sbjct: 590 SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTA 649

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K + + K   Y+ IEI    H F S D++HP+ + I+E+L KL  K++EAG+ P T+L L
Sbjct: 650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPETELAL 709

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EEE+   +  HSE+LA+A+ LI    G T IRI+KN+RVC DCH   K  S I  R
Sbjct: 710 HDVEEEERELMVKVHSERLAIAFGLIATEPG-TEIRIIKNLRVCLDCHTATKLISKITER 768

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RD+NRFHHF  G CSC D W
Sbjct: 769 VIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/475 (25%), Positives = 214/475 (45%), Gaps = 51/475 (10%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSA 162
           G++   R +F  +   D   +N  + GF+       +L VF+ ++K    +P   T+  A
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFA 125

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++A +   D R G  IHG+ +V      + + + +  MY K   ++ AR +FDRM  ++ 
Sbjct: 126 ISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEM-----------QLLGLNPDEVTVSNI-LG----- 265
           + WN MISGY KN    + I +F+++            LL + P    +  + LG     
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245

Query: 266 -----ACF--------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                 C+              + G+I  A  LF   +  D V +  MI GYT NG+ E 
Sbjct: 246 LATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETEL 305

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           +L LF E++    +    ++ S+V     L  +Y    +HG ++         VS+AL  
Sbjct: 306 SLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIY---AIHGYSLKSNFLSHTSVSTALTT 362

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y K    + A  +F+  P +++ SWN+MI+GY QNG   +A++L+ ++      P+  T
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVT 422

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
              +LSAC        G+   D + +      S+     +I +  +   + +A  L   +
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLFDFM 481

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG----PYIMLSNMYA 537
           P K N + W+T++S   + G   HG+ A     E+  +N+G    P   L  +YA
Sbjct: 482 P-KKNEVTWNTMISGYGLHG---HGQEALTIFSEM--LNSGIAPTPVTFLCVLYA 530



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 106/222 (47%), Gaps = 31/222 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T +   L   Y+K  ++  AR LFD+ P + + SWNA++S + ++G  +D          
Sbjct: 354 TSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED---------- 403

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                                A+ +F  MQ   F P   T    L+ACAQL  L  GK +
Sbjct: 404 ---------------------AISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWV 442

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +   +   +++V  AL  MYAK G I +AR LFD M  +N V+WN MISGY  +G  
Sbjct: 443 HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHG 502

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           ++ + +F EM   G+ P  VT   +L AC   G + +   +F
Sbjct: 503 QEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIF 544



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 95/172 (55%), Gaps = 8/172 (4%)

Query: 270 TGRIDDAGRLFHV------IKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPD 322
           T R+ D G +++       ++  D   +  ++ G++ N     +L +F  +  S D++P+
Sbjct: 59  TQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPN 118

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             + +  +S+ +       G V+HG+A+V G D +LL+ S ++ MY K    +DA  VF+
Sbjct: 119 SSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFD 178

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSA 433
            MP ++ + WN+MI+GY +N   +E++ ++  L+ E+  + D+ T + +L A
Sbjct: 179 RMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 35/187 (18%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++  + L K +   +    +E ++ ++   L+  YAK G +  AR LFD MP ++ ++
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFE-SSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVT 488

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN ++S                               G+   G  +EAL +FS M     
Sbjct: 489 WNTMIS-------------------------------GYGLHGHGQEALTIFSEMLNSGI 517

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKA 210
            PT  T +  L AC+    ++ G +I   + +   G    V++   + D+  + G + +A
Sbjct: 518 APTPVTFLCVLYACSHAGLVKEGDEIFNSM-IHRYGFEPSVKHYACVVDILGRAGHLQRA 576

Query: 211 RWLFDRM 217
               + M
Sbjct: 577 LQFIEAM 583


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/592 (38%), Positives = 345/592 (58%), Gaps = 40/592 (6%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L V   +     EP    +   LN C  L  L++G+ IH  I       ++ + N + +M
Sbjct: 90  LYVLDLINCGSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNM 149

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YAK G +++A+ LFD+M  +++VSW ++ISGY ++GQ  + + LF +M  LG  P+E T+
Sbjct: 150 YAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTL 209

Query: 261 SNILGACFQTGRIDDAGR------------------------------------LFHVIK 284
           S++L A   TG  D  GR                                    +F+ + 
Sbjct: 210 SSLLKAS-GTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLA 268

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            K+ V W  +I G+ + G+ E  + LF +ML +   P  F+ SSV++ CA   SL  G+ 
Sbjct: 269 AKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLA-CASSGSLEQGKW 327

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VH   +  G      + + LIDMY K G   DA  VF  +  +++VSWNS+I+GYAQ+G 
Sbjct: 328 VHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGL 387

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EAL L++++L+  ++P+  TF+SVL+AC H+ L + GQ +F+ +   H I   + H+ 
Sbjct: 388 GAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHV 446

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            +++LLGR+  +++A   I+ +P KP + +W  LL  C M  ++  G  AA  +FEL+P 
Sbjct: 447 TVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPH 506

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           ++GP+++LSN+YA+ GR  D A +R  MK   VKK  A SW+EI+N+VH FV+ D +HP 
Sbjct: 507 DSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPM 566

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            E I     K+  K++E G+ P+T  VL    ++++   + YHSEKLALA+ ++K P G+
Sbjct: 567 REEIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGL 626

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IRI KNIR+CGDCH   KFAS ++GR II+RD+NRFHHF+ G CSC+D W
Sbjct: 627 T-IRIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 191/409 (46%), Gaps = 69/409 (16%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y++++  CT +  ++  + + +H+  + +E +   L N +L+ YAK G L  A+DLFDKM
Sbjct: 108 YSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLL-NFILNMYAKCGSLEEAQDLFDKM 166

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P +D++SW  L+S +++SG                                + EAL +F 
Sbjct: 167 PTKDMVSWTVLISGYSQSGQ-------------------------------ASEALALFP 195

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M    F+P ++T  S L A         G+Q+H   +      NV V ++L DMYA+  
Sbjct: 196 KMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWA 255

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            + +A+ +F+ +  +N+VSWN +I+G+ + G+ +  + LF +M   G  P   T S++L 
Sbjct: 256 HMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL- 314

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    ++G I DA ++F  + ++D V 
Sbjct: 315 ACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVS 374

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W ++I GY Q+G   +AL LF +ML   V+P++ +  SV+++C+    L  GQ       
Sbjct: 375 WNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK 434

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
              ++  +     ++D+  + G  ++A      MP +   + W +++  
Sbjct: 435 KHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGA 483


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 346/614 (56%), Gaps = 41/614 (6%)

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           DK P    +  + L  ++A  G +    ALF +        +   I G A +G   +AL 
Sbjct: 3   DKKP-PAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN 61

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
            +++M     EP  +T  S L  C     +  GK +H + V      +++VR  L D+YA
Sbjct: 62  FYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYA 117

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           +GG++  A+ LFD M  ++LVS   M++ Y K+G+                         
Sbjct: 118 RGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGE------------------------- 152

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                     +D A  LF  ++E+D VCW  MI GYTQNG   +AL+LF  ML    +P+
Sbjct: 153 ----------LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 202

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           + ++ SV+S+C +L +L  G+ VH      G+  ++ V +AL+DMY KCG  +DA  VF+
Sbjct: 203 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 262

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            +  ++VV+WNSMI GYA  G   EAL L+  + +  L P + TF+ +LSAC H+     
Sbjct: 263 KIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 322

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G + F+ +   +GI P ++HY CM+NLLGR+  V++A +L+K++  +P+ ++W TLL  C
Sbjct: 323 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 382

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            + G I  GE     L +    N+G YI+LSN+YAA G W+ VA +R+ MK   VKK   
Sbjct: 383 RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 442

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            S IE++NKVH+F++    HP+ + IY  L ++   L+  G++P T +VLHD  E EK +
Sbjct: 443 CSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKER 502

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
           S+  HSEKLA+A+ LI    G T I+I+KN+RVC DCH   K  S I GR I++RD NRF
Sbjct: 503 SLEVHSEKLAIAFGLINTQPGTT-IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRF 561

Query: 683 HHFVGGNCSCKDNW 696
           HHFV G+CSC D W
Sbjct: 562 HHFVNGSCSCGDYW 575



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 114/361 (31%), Positives = 186/361 (51%), Gaps = 20/361 (5%)

Query: 39  VELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL 97
           +E  K L S  + L F   +  ++   LL  YA+ G +  A+ LFD MP + ++S  A+L
Sbjct: 87  IEPGKALHSQAVKLGF--DSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAML 144

Query: 98  SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
           + +A+ G +   R LFD M  RD V +N  I G+   G   EAL +F RM K + +P + 
Sbjct: 145 TCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEV 204

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T +S L+AC QL  L  G+ +H  I    +  NV V  AL DMY+K G ++ AR +FD++
Sbjct: 205 TVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI 264

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
           +++++V+WN MI GY   G  ++ + LF+ M  +GL+P  +T   IL AC  +G + +  
Sbjct: 265 DDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGW 324

Query: 278 RLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
            +F+ +K++  +      +  M+    + G  E A  L   M   ++ PD     +++ +
Sbjct: 325 DIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGA 381

Query: 333 CAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALI---DMYCKCGVTDDAWTVFNMMPTRN 388
           C       HG++  G+ +V L VD +L  S   I   ++Y   G  D    +  MM    
Sbjct: 382 CR-----LHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSG 436

Query: 389 V 389
           V
Sbjct: 437 V 437



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/442 (23%), Positives = 175/442 (39%), Gaps = 104/442 (23%)

Query: 55  EPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           +P      ++L   YA  G+L Y+  LF +     +  W A++  HA             
Sbjct: 5   KPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHAL------------ 52

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                              +G   +AL  +++M     EP  +T  S L  C     +  
Sbjct: 53  -------------------RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEP 89

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKG------------------------------ 204
           GK +H + V      +++VR  L D+YA+G                              
Sbjct: 90  GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 149

Query: 205 -GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            GE+D AR LFD M  R+ V WN+MI GY +NG P + + LF+ M      P+EVTV ++
Sbjct: 150 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 209

Query: 264 LGACFQ-----------------------------------TGRIDDAGRLFHVIKEKDN 288
           L AC Q                                    G ++DA  +F  I +KD 
Sbjct: 210 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 269

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W +MIVGY   G  ++AL LF  M    + P   +   ++S+C     +  G  +  K
Sbjct: 270 VAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNK 329

Query: 349 AV-VLGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVVSWNSMINGYAQNGQDL 406
                G++  +     ++++  + G  + A+  V NM    + V W +++     +G+  
Sbjct: 330 MKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIA 389

Query: 407 EALALYDKLLQENLKPDSFTFV 428
               + + L+ +NL  +S T++
Sbjct: 390 LGEKIVELLVDQNL-ANSGTYI 410


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 247/697 (35%), Positives = 377/697 (54%), Gaps = 71/697 (10%)

Query: 4   KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLH 62
           +  L ++I  L SR        Y  L+  C   N +  A+RL SH + L        FL 
Sbjct: 41  RESLHKSIQLLESRELELDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLA 100

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y K G+L YAR+L                               F+ MP R+  
Sbjct: 101 NLLIEMYGKCGRLPYAREL-------------------------------FESMPSRNVH 129

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           ++  A+A F++ G   EAL  F RM +  +R +   ++ + A  A      + +G++IH 
Sbjct: 130 TWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHR 189

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
              +  L  NV V  A+  MY K G +D AR  F+ +  +N V+WN M++ Y  +G+ ++
Sbjct: 190 YARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDRE 249

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
            ++LF+EM                                    + D+VCW  MI  Y Q
Sbjct: 250 ALELFREMH-----------------------------------DADSVCWNAMIAAYAQ 274

Query: 301 NGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           +G+ + AL L+  M  + D+ P + +  +V+  CA+L++L  G+ +H +      D +LL
Sbjct: 275 HGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLL 334

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           VS+AL+ MY KCG  D+A  VF+ M  ++ +SWN++I+ YA +G   +AL LY ++  + 
Sbjct: 335 VSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQG 394

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KP   TFV +LSAC H  L   G ++F  +   H I PS+ H+ C+I+LLGR   + +A
Sbjct: 395 VKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEA 454

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             ++KS+P + N++ W +LL  C   GD+K G  AA  + +  P  +G Y++LSN+YAA 
Sbjct: 455 ELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAA 514

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRW+DV  IR  M ++ VKK    SWIEI + VH+FVS D +HP+ E IY EL K+++++
Sbjct: 515 GRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEM 574

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           +  G+ P+T  V HD +EEEK   +  HSEKLA+ Y  +  P G + +RI+KN+RVC DC
Sbjct: 575 KGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVP-GKSMLRIVKNLRVCLDC 633

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H   KF S I GR I++RD+ RFH F  G+CSC+D W
Sbjct: 634 HTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/631 (37%), Positives = 350/631 (55%), Gaps = 37/631 (5%)

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
           + G + D + +FD MP +D V +N+ I G+  KG   E++Q+F  M      P+  T  +
Sbjct: 192 KRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMAN 251

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
            L AC Q    + G   H  ++   +G +VFV  +L DMY+  G+   A  +FD M +R+
Sbjct: 252 LLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRS 311

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----------- 270
           L+SWN MISGY++NG   +   LF+ +   G   D  T+ +++  C QT           
Sbjct: 312 LISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHS 371

Query: 271 ------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                   G I  A  +F  + +K+ + WT M+VG +QNG  ED
Sbjct: 372 CIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAED 431

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           AL LF +M  E V  +  ++ S+V  CA L SL  G+ VH   +  G   D +++SALID
Sbjct: 432 ALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALID 491

Query: 367 MYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           MY KCG    A  +F N    ++V+  NSMI GY  +G    AL +Y ++++E LKP+  
Sbjct: 492 MYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQT 551

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TFVS+L+AC H+ L E G+  F S+   H + P   HYAC+++L  R+  +++A +L+K 
Sbjct: 552 TFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQ 611

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +P++ +   LLS C    +   G   A  L  L+ +N+G Y+MLSN+YA   +WE V
Sbjct: 612 MPFQPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESV 671

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
             IR  M+ + +KK   YS IE+ NKV+ F + D +HP    IY+ L  L  +++  G+ 
Sbjct: 672 NYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYI 731

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+T  VL D  E  KVK +  HSE+LA+A+ L+  P G + I+I KN+RVC DCH   K+
Sbjct: 732 PDTSCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCG-SLIKITKNLRVCVDCHNVTKY 790

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S I+ R II+RD+NRFHHFV G CSC D W
Sbjct: 791 ISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 230/500 (46%), Gaps = 49/500 (9%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  ++  G +   R +FD+  + ++   N  IAGF       E  ++F  M     E  
Sbjct: 85  LIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEIN 144

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT + AL AC  LLD   G +I    V      +++V +++ +   K G +  A+ +FD
Sbjct: 145 SYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFD 204

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG---- 271
            M  +++V WN +I GY++ G   + I +F EM   GL P  VT++N+L AC Q+G    
Sbjct: 205 GMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKV 264

Query: 272 ----------------------------RIDDAGR---LFHVIKEKDNVCWTTMIVGYTQ 300
                                        + D G    +F  +  +  + W  MI GY Q
Sbjct: 265 GMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQ 324

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG   ++  LF  ++      D  ++ S++  C++ + L +G+++H   +   ++  L++
Sbjct: 325 NGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVL 384

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           S+A++DMY KCG    A  VF  M  +NV++W +M+ G +QNG   +AL L+ ++ +E +
Sbjct: 385 STAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKV 444

Query: 421 KPDSFTFVSVLSACLHADLFERGQN---HFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             +S T VS++  C H     +G+    HF      HG        + +I++  +   + 
Sbjct: 445 AANSVTLVSLVHCCAHLGSLTKGRTVHAHFIR----HGYAFDAVITSALIDMYAKCGKIH 500

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA----ARHLFELEPINAGPYIMLS 533
            A  L  +  H  + ++ ++++    M G   HG  A    +R + E    N   ++ L 
Sbjct: 501 SAEKLFNNEFHLKDVILCNSMIMGYGMHG---HGRYALGVYSRMIEERLKPNQTTFVSLL 557

Query: 534 NMYAACGRWEDVASIRSSMK 553
              +  G  E+  ++  SM+
Sbjct: 558 TACSHSGLVEEGKALFHSME 577



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 35/304 (11%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K IH +I+   +    F+   L  +Y+  G +  AR +FD+ +       N MI+G+L+N
Sbjct: 64  KSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRN 123

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
            Q  +   LF+ M    +  +  T    L AC                            
Sbjct: 124 QQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVG 183

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G + DA ++F  + EKD VCW ++I GY Q G   +++ +F EM+   +R
Sbjct: 184 SSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR 243

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P   ++++++ +C +      G   H   + LG+ +D+ V ++L+DMY   G T  A  V
Sbjct: 244 PSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALV 303

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M +R+++SWN+MI+GY QNG   E+ AL+ +L+Q     DS T VS++  C      
Sbjct: 304 FDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDL 363

Query: 441 ERGQ 444
           E G+
Sbjct: 364 ENGR 367



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 157/339 (46%), Gaps = 47/339 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++  G       +FD M  R  +S+N  I+G+   G   E+  +F R+ 
Sbjct: 280 DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLV 339

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +        T VS +  C+Q  DL  G+ +H  I+   L  ++ +  A+ DMY+K G I 
Sbjct: 340 QSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIK 399

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
           +A  +F RM  +N+++W  M+ G  +NG  +  + LF +MQ   +  + VT+ +++  C 
Sbjct: 400 QATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCA 459

Query: 268 ----------------------------------FQTGRIDDAGRLF-HVIKEKDNVCWT 292
                                              + G+I  A +LF +    KD +   
Sbjct: 460 HLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCN 519

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI+GY  +G    AL +++ M+ E ++P++ +  S++++C+     + G V  GKA+  
Sbjct: 520 SMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACS-----HSGLVEEGKALFH 574

Query: 353 GVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMP 385
            ++ D  V       + L+D++ + G  ++A  +   MP
Sbjct: 575 SMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMP 613



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 12/208 (5%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L H + +H + +   V  +  +++ LI +Y   G    A  VF+          N+MI 
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV-HGI 456
           G+ +N Q +E   L+  +   +++ +S+T +  L AC   DL +         +AV  G 
Sbjct: 119 GFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKAC--TDLLDDEVGMEIIRAAVRRGF 176

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
              L   + M+N L +   +  A  +   +P K + + W++++      G ++ G     
Sbjct: 177 HLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEK-DVVCWNSIIG-----GYVQKGLFWES 230

Query: 517 HLFELEPINAG---PYIMLSNMYAACGR 541
               LE I  G     + ++N+  ACG+
Sbjct: 231 IQMFLEMIGGGLRPSPVTMANLLKACGQ 258


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/585 (37%), Positives = 343/585 (58%), Gaps = 5/585 (0%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F+ +P  +   +N  I G        +A+  + +M      P  +T+ +   AC     
Sbjct: 86  VFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEA 145

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              G Q+H  ++   L G+V +R+A   MY   GE++ AR +     N +++ +N MI G
Sbjct: 146 AEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDG 205

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           YLK G+ +   +LF  M+   +    V VS +     + G I++A  LF+ +KEK+ + W
Sbjct: 206 YLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMA----KCGMIEEARELFNEMKEKNEISW 261

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + MI GY + G  ++AL +FN M  E++RP KF +SSV+++CA L +L  G+ +H     
Sbjct: 262 SAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNN 321

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                D ++ +AL+DMY KCG  D AW VF  M  + V +WN+MI G   +G+  +A+ L
Sbjct: 322 NSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIEL 381

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + K+ ++  +P+  T + VLSAC H+ + + G   F+S+  V+GI P ++HY C+++LLG
Sbjct: 382 FFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLG 441

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  + +A +++ S+P +P++ +W  LL  C   GD++ GE   + L ELEP N+G Y +
Sbjct: 442 RAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYAL 501

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  GRW+DVA++R  MK + VK     S I+ D  VH+F   D +HP+ + IY  
Sbjct: 502 LSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLM 561

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  +IK+L+  GFSPNT  VL D +EEEK   + YHSEKLA+A+ LI    G T I ++K
Sbjct: 562 LKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTT-IHVVK 620

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R+C DCH   K  S +  R II+RD  R+HHF  G CSCKD W
Sbjct: 621 NLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 173/335 (51%), Gaps = 15/335 (4%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K G++  A++LF  M  +++ SWN ++S  A+ G +++ R LF++M  ++ +
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S++  I G+   G+ +EAL+VF+ MQ++   P  +   S L ACA L  L +G+ IH  +
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
              +   +  +  AL DMYAK G +D A  +F++M  + + +WN MI G   +G+ +  I
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAI 379

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV--------CWTTM 294
           +LF +MQ     P+ +T+  +L AC  +G +D+  R+F+ ++E   +        C   +
Sbjct: 380 ELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDL 439

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           +      G+ E+       M S  + P      +++ +C K   +  G+ V GK ++   
Sbjct: 440 LGRAGLLGEAEEV------MYSMPMEPSAAVWGALLGACRKHGDVELGERV-GKILLELE 492

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
             +    + L ++Y + G  DD   V  +M  R V
Sbjct: 493 PQNSGRYALLSNIYARAGRWDDVANVRKLMKERGV 527



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 83/378 (21%), Positives = 158/378 (41%), Gaps = 43/378 (11%)

Query: 260 VSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           VS  L  C+      +   A ++F  +   +   +  +I G  QN +   A+  + +M+ 
Sbjct: 64  VSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMI 123

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
              RP+KF+  ++  +C    +   G  VH   +  G+  D+ + SA I MY   G  + 
Sbjct: 124 AHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEG 183

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +       +V+ +N+MI+GY + G+   A  L+  +  +N+   +   VS ++ C  
Sbjct: 184 ARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWN-VMVSGMAKC-- 240

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSL 493
             + E  +  F+ +   + I+     ++ MI+   +     +A+++   +     +P   
Sbjct: 241 -GMIEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKF 294

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM---LSNMYAACGRWEDVASIRS 550
           + S++L+ CA  G +  G     H +     N+   ++   L +MYA CGR +    +  
Sbjct: 295 VLSSVLAACANLGALDQGRWI--HAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFE 352

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+ K V     ++W       +  +     H   E   E    L  K+Q+  F PN   
Sbjct: 353 KMEKKEV-----FTW-------NAMICGLGMHGRAEDAIE----LFFKMQKQKFRPNGIT 396

Query: 611 VLHDTQEEEKVKSICYHS 628
           +L        V S C HS
Sbjct: 397 LL-------GVLSACAHS 407



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 15/231 (6%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT--DDAWTVFNMMPTRNVVSWNSM 395
           SL+H + VH  A+  G   D  VS  L+  Y     +  + A  VF  +P  NV  +N +
Sbjct: 42  SLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNII 101

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVH 454
           I G  QN +  +A+  Y K++  + +P+ FT+ ++  AC  A+  E G Q H   I    
Sbjct: 102 IKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIK--Q 159

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM- 513
           G++  +   +  I + G   +V+ A  +   L    NS     +     + G +K GE+ 
Sbjct: 160 GLSGDVHIRSAGIQMYGSFGEVEGARRM---LGEDGNS---DVICFNAMIDGYLKCGEVE 213

Query: 514 AARHLF-ELEPINAGPY-IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           AA+ LF  +E  N G + +M+S M A CG  E+   + + MK KN   ++A
Sbjct: 214 AAKELFWSMEDKNVGSWNVMVSGM-AKCGMIEEARELFNEMKEKNEISWSA 263


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/643 (35%), Positives = 367/643 (57%), Gaps = 38/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++    A++S +A+   + +   +F++M  +D VS+ T +AG+A  G ++ ALQ+  +MQ
Sbjct: 179 NLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQ 238

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T VS L A A +  LR G+ IHG          V V NAL DMY K G   
Sbjct: 239 EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSAR 298

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +F  M ++ +VSWN MI G  +NG+ ++    F +M   G  P  VT+  +L AC 
Sbjct: 299 IARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   R+D A  +F+ + EK NV W  
Sbjct: 359 NLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNL-EKTNVTWNA 417

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+GY QNG  ++AL LF  M S+ ++ D F++  V+++ A  +     + +HG AV   
Sbjct: 418 MILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRAC 477

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D+++ VS+AL+DMY KCG    A  +F+MM  R+V++WN+MI+GY  +G   E L L++
Sbjct: 478 MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN 537

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ +  +KP+  TF+SV+SAC H+   E G   F S+   + + P++DHY+ M++LLGR+
Sbjct: 538 EMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRA 597

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D A + I+ +P KP   +   +L  C +  +++ GE AA+ LF+L+P   G +++L+
Sbjct: 598 GQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLA 657

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+   W+ VA +R++M+ K + K    SW+E+ N++H F S    HPE++ IY  L 
Sbjct: 658 NIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLE 717

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            L  +++ AG+ P+   + HD +E+ K + +  HSE+LA+A+ L+    G T + I KN+
Sbjct: 718 TLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTT-LHIRKNL 775

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVCGDCH   K+ S + GR II+RD  RFHHF  G+CSC D W
Sbjct: 776 RVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 161/584 (27%), Positives = 259/584 (44%), Gaps = 103/584 (17%)

Query: 56  PNTTFLHN--------RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQ 107
           P+   L N        ++L F  K+G  FY   LF             ++S   + GS  
Sbjct: 49  PSVVLLENCTSKKELYQILPFIIKNG--FYNEHLFQ----------TKVISLFCKFGSNS 96

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
           +   +F+ + ++  V Y+  + G+A      +AL  F RM  D        +   L  C 
Sbjct: 97  EAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCG 156

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
           + LDL++G++IHG I+      N+FV  A+  +YAK  +ID A  +F+RM +++LVSW  
Sbjct: 157 ENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTT 216

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           +++GY +NG  K+ + L  +MQ  G  PD VT+ +IL A                     
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG 276

Query: 268 ---------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                          F+ G    A  +F  ++ K  V W TMI G  QNG+ E+A   F 
Sbjct: 277 FESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +ML E   P + ++  V+ +CA L  L  G  VH     L +D ++ V ++LI MY KC 
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCK 396

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             D A ++FN +   N V+WN+MI GYAQNG   EAL L+  +  + +K D FT V V++
Sbjct: 397 RVDIAASIFNNLEKTN-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVIT 455

Query: 433 --------------------ACLHADLF---------------ERGQNHFDSISAVHGIT 457
                               AC+  ++F               +  +  FD +   H IT
Sbjct: 456 ALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT 515

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMA 514
                +  MI+  G      + +DL   +     KPN + + +++S C+  G ++ G + 
Sbjct: 516 -----WNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLL 570

Query: 515 ARHLFE---LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            + + E   LEP     Y  + ++    G+ +D  +    M  K
Sbjct: 571 FKSMQEDYYLEP-TMDHYSAMVDLLGRAGQLDDAWNFIQEMPIK 613



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 172/366 (46%), Gaps = 47/366 (12%)

Query: 233 LKNGQPKKCIDLFQEMQLL---GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           L+N   KK  +L+Q +  +   G   + +  + ++    + G   +A R+F  ++ K +V
Sbjct: 54  LENCTSKK--ELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDV 111

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            +  M+ GY +N    DAL  F  M+ ++VR      + ++  C +   L  G+ +HG  
Sbjct: 112 LYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLI 171

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G + +L V +A++ +Y KC   D+A+ +F  M  +++VSW +++ GYAQNG    AL
Sbjct: 172 ITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRAL 231

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGI-- 456
            L  ++ +   KPDS T VS+L A            +H   F  G   F+S+  V     
Sbjct: 232 QLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSG---FESLVNVTNALL 288

Query: 457 --------------------TPSLDHYACMINLLGRSSDVDKA-VDLIKSLPHK--PNSL 493
                               + ++  +  MI+   ++ + ++A    +K L     P  +
Sbjct: 289 DMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRV 348

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM--LSNMYAACGRWEDVASIRSS 551
               +L  CA  GD++ G    + L +L+ +++   +M  L +MY+ C R +  ASI ++
Sbjct: 349 TMMGVLLACANLGDLERGWFVHKLLDKLK-LDSNVSVMNSLISMYSKCKRVDIAASIFNN 407

Query: 552 MKSKNV 557
           ++  NV
Sbjct: 408 LEKTNV 413


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/675 (34%), Positives = 373/675 (55%), Gaps = 77/675 (11%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            +L+  ++  YA++ +  +A  LF +MP++D++SWN+++        +   R LFD+MP 
Sbjct: 26  VYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPE 85

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R  VS+ T I GF   G    A  +F +M         +  ++A N+            I
Sbjct: 86  RSVVSWTTMINGFLQFGKIEVAEGLFYKMP--------FRDIAAWNS-----------MI 126

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           +G                    Y   G ++    LF  M  RN++SW  MI G  ++G+ 
Sbjct: 127 YG--------------------YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRS 166

Query: 239 KKCIDLFQEMQLLGLN--PDEVTVSNILGAC----------------FQTG--------- 271
           ++ + LF++M   G+   P   T   ++ AC                F+ G         
Sbjct: 167 EEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISA 226

Query: 272 ----------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                     +++D+ R+FH     + V WT ++ GY  N K EDAL +F EM+ E V P
Sbjct: 227 ALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLP 286

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           ++ S +S ++SC  L +L  G+ +H  AV LG++ D+ V ++LI MY +CG  +D   +F
Sbjct: 287 NQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF 346

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             +  +N+VSWNS+I G AQ+G  + ALA ++++++  ++PD  TF  +LSAC H+ + +
Sbjct: 347 KRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 406

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           +G+  F   S        LDHYACM+++LGRS  +++A +LI+++P K NS++W  LLS 
Sbjct: 407 KGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 466

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C M   ++  E AA+ + +LEP  +  Y++LSN+YA+  RW DV+ IR  MK + + K  
Sbjct: 467 CTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQP 526

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
             SWI I    ++F+S DR+HP ++ IY++L  L  KL+E G+ P+ +  LHD ++E+K 
Sbjct: 527 GRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKE 586

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             + YHSE+LA+ + LI    G T I +MKN+RVCGDCH  +K  + I+ R II+RDS R
Sbjct: 587 VMLSYHSERLAIGFGLISTVEGST-ITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTR 645

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF+ G CSC D W
Sbjct: 646 FHHFMDGRCSCGDYW 660



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 190/414 (45%), Gaps = 55/414 (13%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++  ++  C    D+ +A++L   M        TT + N  L F    GK+  A  LF K
Sbjct: 59  SWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMI-NGFLQF----GKIEVAEGLFYK 113

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP RDI +WN+++  +  +G V+D   LF +MP R+ +S+ + I G    G S EAL +F
Sbjct: 114 MPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLF 173

Query: 145 SRMQKDRFE--PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
            +M     E  PT  T+   + ACA    L +G QIH  +       + ++  AL   YA
Sbjct: 174 RQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 233

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
              +++ +  +F    + N+V W  +++GY  N + +  + +F EM   G+ P++ + ++
Sbjct: 234 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTS 293

Query: 263 ILGAC-----------------------------------FQTGRIDDAGRLFHVIKEKD 287
            L +C                                   ++ G ++D   +F  I +K+
Sbjct: 294 ALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 353

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-- 345
            V W ++IVG  Q+G    AL  FN+M+   V PD+ + + ++S+C+       G+ +  
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 413

Query: 346 ---HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
                K+  + +D      + ++D+  + G  ++A  +   MP +     NSM+
Sbjct: 414 YFSENKSAEVKLDH----YACMVDILGRSGKLEEAEELIRNMPVKA----NSMV 459



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 162/364 (44%), Gaps = 70/364 (19%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ID+AR +FD+++  ++  + +MI+GY +N +    + LF EM +     D V+ ++++  
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPV----KDVVSWNSMIKG 66

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-------------------------- 300
           CF    +  A +LF  + E+  V WTTMI G+ Q                          
Sbjct: 67  CFDCADLTMARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMI 126

Query: 301 -----NGKEEDALILFNEM---------------------------------LSEDVRPD 322
                NG+ ED L LF EM                                    +V+P 
Sbjct: 127 YGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPT 186

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +   V+++CA  ++LY G  +H     LG   D  +S+ALI  Y  C   +D+  VF+
Sbjct: 187 SSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFH 246

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
                NVV W +++ GY  N +  +AL ++ ++++E + P+  +F S L++C   +  + 
Sbjct: 247 GKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDW 306

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+    + +   G+   +     +I +  R  +++  V + K +  K N + W++++  C
Sbjct: 307 GRE-IHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGC 364

Query: 503 AMKG 506
           A  G
Sbjct: 365 AQHG 368



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 120/279 (43%), Gaps = 54/279 (19%)

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           RID+A  +F  +   D   +T MI GY +N + + AL LF EM  +DV     S +S++ 
Sbjct: 10  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNSMIK 65

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            C   A L   + +  +      +  ++  + +I+ + + G  + A  +F  MP R++ +
Sbjct: 66  GCFDCADLTMARKLFDEMP----ERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAA 121

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WNSMI GY  NG+  + L L+ ++   N+     ++ S++                    
Sbjct: 122 WNSMIYGYCCNGRVEDGLRLFQEMPCRNV----ISWTSMIGG------------------ 159

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-----PHKPNSLIWSTLLSVCAMKG 506
                   LD +       GRS   ++A+ L + +       KP S  +  +++ CA   
Sbjct: 160 --------LDQH-------GRS---EEALGLFRQMMGCGVEVKPTSSTYCCVITACANAS 201

Query: 507 DIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWED 544
            +  G     H+F+L    +A     L   YA C + ED
Sbjct: 202 ALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMED 240


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/640 (37%), Positives = 363/640 (56%), Gaps = 39/640 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++A+   G + D + +F   P ++ VS+   I+G A      EA+ VF  M    F+
Sbjct: 60  NSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFK 119

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L A A L  +R  K +H   V G   GNVFV  AL DMY+K G +  AR L
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQL 179

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-----CF 268
           F+ M+ RN+V+WN ++SGY  +G  ++ IDLF  M+  GL  D  T+ +++ A     C 
Sbjct: 180 FESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCL 239

Query: 269 QTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
           Q G                               +DDA R+F  +  KD   WT M+ G+
Sbjct: 240 QVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGF 299

Query: 299 TQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +     + A+  FN+ML  ++++ D  ++  ++SSC+   +L  G+ VH  A+     ++
Sbjct: 300 SSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANN 359

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V SA+IDMY  CG  +DA   F  M  ++VV WN+MI G   NG   +A+ L+ ++  
Sbjct: 360 IFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKG 419

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             L PD  TFVSVL AC HA +   G   F  +     + P+L HYAC+I++LGR+  +D
Sbjct: 420 SGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLD 479

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            A   I ++P +P+  ++STLL  C + G+IK G   ++ +FE+EP +AG Y++LSNMYA
Sbjct: 480 AAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYA 539

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G WE V   R+S++SK +KK   +S IEI+ +++ F++ ++ HP+   I   L  LI 
Sbjct: 540 LAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLIL 599

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVC 656
           K+++AG+ PNT ++L D  ++ K   + +HSEK+A+A+ L++ KP   T IRI KN+R C
Sbjct: 600 KIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPE--TIIRITKNLRTC 657

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   KF S + GR ++++D+NRFH F  G CSC+D W
Sbjct: 658 DDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 166/330 (50%), Gaps = 39/330 (11%)

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           R  P    H S L    +L DL+  +QIH +I+   L  N F+ N+L + Y   G +  A
Sbjct: 19  RLSPLAQPHASILR---KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADA 75

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---- 266
           + +F     +N+VSW ++ISG  KN    + ID+F+EM +    P+ VT+S++L A    
Sbjct: 76  KQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANL 135

Query: 267 ----------CF------------QTGRID---------DAGRLFHVIKEKDNVCWTTMI 295
                     CF            +T  +D          A +LF  + E++ V W  ++
Sbjct: 136 GLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIV 195

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY+ +G  E+A+ LFN M  + +  D ++I S++ +   +  L  G  +HG  +  G +
Sbjct: 196 SGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYE 255

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
           +D  + +AL+D+Y      DDA  VF+ M  ++V +W  M+ G++       A+  ++K+
Sbjct: 256 NDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM 315

Query: 416 LQ-ENLKPDSFTFVSVLSACLHADLFERGQ 444
           L  +NLK DS   + +LS+C H+   ++G+
Sbjct: 316 LGIQNLKLDSIALMGILSSCSHSGALQQGR 345



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 168/384 (43%), Gaps = 69/384 (17%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           + +AK +        +E N  F+   L+  Y+K G +  AR LF+ M  R++++WNA++S
Sbjct: 138 IRIAKSVHCFWVRGGFEGNV-FVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVS 196

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                          G+++ GFS EA+ +F+ M++       YT
Sbjct: 197 -------------------------------GYSDHGFSEEAIDLFNLMRRKGLLVDFYT 225

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            +S + A   +  L+ G  IHG I+      +  ++ AL D+Y     +D A  +F  M+
Sbjct: 226 IMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMS 285

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-----FQTGR 272
            +++ +W LM++G+       + I  F +M  +  L  D + +  IL +C      Q GR
Sbjct: 286 VKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGR 345

Query: 273 ------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                         ++DA R F+ + EKD VCW  MI G   NG
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVS 361
              DA+ LF +M    + PD+ +  SV+ +C+    +Y G Q+ +       V  +L   
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHY 465

Query: 362 SALIDMYCKCGVTDDAWTVFNMMP 385
           + +ID+  + G  D A++  N MP
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMP 489



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 55/351 (15%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  +    ++++ A    G + DA ++FH    K+ V WT +I G  +N    +A+ +F
Sbjct: 51  GLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVF 110

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            EM+  + +P+  +ISSV+ + A L  +   + VH   V  G + ++ V +AL+DMY K 
Sbjct: 111 REMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKF 170

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  +F  M  RNVV+WN++++GY+ +G   EA+ L++ + ++ L  D +T +S++
Sbjct: 171 GCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLI 230

Query: 432 SACLHADLFERGQNHFDSISAVHGI-------------TPSLDHY--------------- 463
            A L     + G       + +HG              T  +D Y               
Sbjct: 231 PASLSVGCLQVG-------TGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSE 283

Query: 464 -------ACMINLLGRSSDV--DKAVDLIKSLPH----KPNSLIWSTLLSVCAMKGDIKH 510
                  A  + L G SS    D+A+     +      K +S+    +LS C+  G ++ 
Sbjct: 284 MSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQ 343

Query: 511 GE----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           G     +A +  F    I  G  ++  +MYA CG  ED       M  K+V
Sbjct: 344 GRRVHALAIKTCFA-NNIFVGSAVI--DMYANCGNLEDAKRFFYGMGEKDV 391


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 342/601 (56%), Gaps = 40/601 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L  ++A  G +    ALF +        +   I G A +G   +AL  +++M     EP 
Sbjct: 68  LQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPN 127

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T  S L  C     +  GK +H + V      +++VR  L D+YA+GG++  A+ LFD
Sbjct: 128 AFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD 183

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M  ++LVS   M++ Y K+G+                                   +D 
Sbjct: 184 TMPEKSLVSLTAMLTCYAKHGE-----------------------------------LDA 208

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  ++E+D VCW  MI GYTQNG   +AL+LF  ML    +P++ ++ SV+S+C +
Sbjct: 209 ARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQ 268

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L +L  G+ VH      G+  ++ V +AL+DMY KCG  +DA  VF+ +  ++VV+WNSM
Sbjct: 269 LGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSM 328

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I GYA +G   EAL L+  + +  L P + TF+ +LSAC H+     G + F+ +   +G
Sbjct: 329 IVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYG 388

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           I P ++HY CM+NLLGR+  V++A +L+K++  +P+ ++W TLL  C + G I  GE   
Sbjct: 389 IEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIV 448

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
             L +    N+G YI+LSN+YAA G W+ VA +R+ MK   VKK    S IE++NKVH+F
Sbjct: 449 ELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEF 508

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           ++    HP+ + IY  L ++   L+  G++P T +VLHD  E EK +S+  HSEKLA+A+
Sbjct: 509 LAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAF 568

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            LI    G T I+I+KN+RVC DCH   K  S I GR I++RD NRFHHFV G+CSC D 
Sbjct: 569 GLINTQPGTT-IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDY 627

Query: 696 W 696
           W
Sbjct: 628 W 628



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/339 (31%), Positives = 178/339 (52%), Gaps = 17/339 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++   LL  YA+ G +  A+ LFD MP + ++S  A+L+ +A+ G +   R LFD M  R
Sbjct: 160 YVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEER 219

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D V +N  I G+   G   EAL +F RM K + +P + T +S L+AC QL  L  G+ +H
Sbjct: 220 DGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVH 279

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I    +  NV V  AL DMY+K G ++ AR +FD+++++++V+WN MI GY  +G  +
Sbjct: 280 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQ 339

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTM 294
           + + LF+ M  +GL+P  +T   IL AC  +G + +   +F+ +K++  +      +  M
Sbjct: 340 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 399

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LG 353
           +    + G  E A  L   M   ++ PD     +++ +C       HG++  G+ +V L 
Sbjct: 400 VNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACR-----LHGKIALGEKIVELL 451

Query: 354 VDDDLLVSSALI---DMYCKCGVTDDAWTVFNMMPTRNV 389
           VD +L  S   I   ++Y   G  D    +  MM    V
Sbjct: 452 VDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 490



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 177/440 (40%), Gaps = 109/440 (24%)

Query: 62  HNRLLHF-----YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           H+ +L+F     YA  G+L Y+  LF +     +  W A++  HA               
Sbjct: 60  HHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHAL-------------- 105

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                            +G   +AL  +++M     EP  +T  S L  C     +  GK
Sbjct: 106 -----------------RGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGK 144

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKG-------------------------------G 205
            +H + V      +++VR  L D+YA+G                               G
Sbjct: 145 ALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHG 204

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           E+D AR LFD M  R+ V WN+MI GY +NG P + + LF+ M      P+EVTV ++L 
Sbjct: 205 ELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLS 264

Query: 266 ACFQ-----------------------------------TGRIDDAGRLFHVIKEKDNVC 290
           AC Q                                    G ++DA  +F  I +KD V 
Sbjct: 265 ACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVA 324

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W +MIVGY  +G  ++AL LF  M    + P   +   ++S+C     +  G  +  K  
Sbjct: 325 WNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMK 384

Query: 351 -VLGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
              G++  +     ++++  + G  + A+  V NM    + V W +++     +G+    
Sbjct: 385 DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALG 444

Query: 409 LALYDKLLQENLKPDSFTFV 428
             + + L+ +NL  +S T++
Sbjct: 445 EKIVELLVDQNLA-NSGTYI 463



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 26/194 (13%)

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           K  ++ H   +H      G+D   +++  L   Y   G  D +  +F      +V  W +
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-------LHADLFERGQNHF 447
           +I+G+A  G   +AL  Y ++L + ++P++FTF S+L  C       LH+   + G   F
Sbjct: 99  IIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLG---F 155

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           DS   V   T  LD YA       R  DV  A  L  ++P K  SL+  T +  C     
Sbjct: 156 DSDLYVR--TGLLDVYA-------RGGDVVSAQQLFDTMPEK--SLVSLTAMLTCYA--- 201

Query: 508 IKHGEM-AARHLFE 520
            KHGE+ AAR LF+
Sbjct: 202 -KHGELDAARVLFD 214


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/672 (34%), Positives = 365/672 (54%), Gaps = 64/672 (9%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIR------DSVSYNTAIAGFANKGFSREAL 141
           R+   +NALLS +AR G V D ++LF            D V++NT I+     G   EA+
Sbjct: 208 RERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAV 267

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDM 200
           +V   M      P   T  SAL AC++L  L  G+++H  ++   +L  N FV +AL DM
Sbjct: 268 EVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDM 327

Query: 201 YAKGGEIDKARWLFDRMN--NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDE 257
           YA   ++  AR +FD +   +R L  WN MI GY + G  ++ ++LF  M+   G  P E
Sbjct: 328 YAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSE 387

Query: 258 VTVSNILGACFQT-----------------------------------GRIDDAGRLFHV 282
            T+S +L AC ++                                   G +D A R+F +
Sbjct: 388 TTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAM 447

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEML----------------SEDVRPDKFSI 326
           I  +D V W T+I G    G   +A  L  EM                 +    P+  ++
Sbjct: 448 IDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITL 507

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            +++  CA LA+   G+ +HG AV   ++ D+ V SAL+DMY KCG    +  VF+ +P 
Sbjct: 508 MTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPR 567

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQN 445
           RNV++WN +I  Y  +G   EA+AL+D++       P+  TF++ L+AC H+ L +RG  
Sbjct: 568 RNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLE 627

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVCAM 504
            F  +   HG+ P+ D +AC++++LGR+  +D+A  +I S+ P +     WS+LL  C +
Sbjct: 628 LFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRL 687

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             +++ GE+AA  LFELEP  A  Y++L N+Y+A G W+   ++R  M+ + V K    S
Sbjct: 688 HRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCS 747

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           WIE+D  +H+F++ + +HP +  ++  +  L ++++  G++P+T  VLHD  E+EK   +
Sbjct: 748 WIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAML 807

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            YHSEKLA+A+ L++ P G   IR+ KN+RVC DCH   KF S ++GR I+LRD  RFHH
Sbjct: 808 RYHSEKLAIAFGLLRAPPGAA-IRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHH 866

Query: 685 FVGGNCSCKDNW 696
           F  G+CSC D W
Sbjct: 867 FRDGSCSCGDYW 878



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 214/483 (44%), Gaps = 72/483 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKM--PIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKD 150
           NALL+A+AR G +    ALF      +RD+VSYN+ I+          AL     M  + 
Sbjct: 104 NALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEG 163

Query: 151 RFEPTDYTHVSALNACAQLL--DLRR-GKQIHG-KIVVGNL--GGNVFVRNALTDMYAKG 204
           R + + +T VS L AC+ L   D RR G++ H   +  G L  G   F  NAL  MYA+ 
Sbjct: 164 RHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARL 223

Query: 205 GEIDKARWLFDRM------NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           G +D A+ LF            ++V+WN MIS  ++ G+  + +++  +M  LG+ PD V
Sbjct: 224 GLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGV 283

Query: 259 TVSNILGAC-----FQTGR-------------------------------IDDAGRLFHV 282
           T ++ L AC        GR                               +  A R+F +
Sbjct: 284 TFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDM 343

Query: 283 IKEKDNVC--WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASL 339
           + E       W  MI GY Q G +E+AL LF+ M +E    P + ++S V+ +CA+    
Sbjct: 344 VPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGF 403

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
              + +HG  V  G+  +  V +AL+DMY + G  D A  +F M+  R+VVSWN++I G 
Sbjct: 404 AGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGC 463

Query: 400 AQNGQDLEALALYDKLL----------------QENLKPDSFTFVSVLSACLHADLFERG 443
              G   EA  L  ++                      P++ T +++L  C       RG
Sbjct: 464 VVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARG 523

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +      +  H +   +   + ++++  +   +  +  +   LP + N + W+ L+    
Sbjct: 524 KE-IHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR-NVITWNVLIMAYG 581

Query: 504 MKG 506
           M G
Sbjct: 582 MHG 584



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/450 (22%), Positives = 198/450 (44%), Gaps = 92/450 (20%)

Query: 9   QAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +A++ LY   S G       +   +  C+R+  + L + + + +  +      +F+ + L
Sbjct: 265 EAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASAL 324

Query: 66  LHFYAKSGKLFYARDLFDKM--PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           +  YA + K+  AR +FD +  P R +  WNA++  +A++                    
Sbjct: 325 VDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQA-------------------- 364

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                      G   EAL++FSRM+ +    P++ T    L ACA+       + +HG +
Sbjct: 365 -----------GMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYV 413

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V   + GN FV+NAL DMYA+ GE+D AR +F  ++ R++VSWN +I+G +  G   +  
Sbjct: 414 VKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAF 473

Query: 243 DLFQEMQLLGLN----------------PDEVTVSNILGAC------------------- 267
            L  EMQL   +                P+ +T+  +L  C                   
Sbjct: 474 QLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRH 533

Query: 268 ----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                            + G +  +  +F  +  ++ + W  +I+ Y  +G  ++A+ LF
Sbjct: 534 ALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALF 593

Query: 312 NEMLS-EDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYC 369
           +EM +  +  P++ +  + +++C+    +  G ++ HG     GV     + + ++D+  
Sbjct: 594 DEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLG 653

Query: 370 KCGVTDDAWTVFNMMPT--RNVVSWNSMIN 397
           + G  D+A+++   M    + V +W+S++ 
Sbjct: 654 RAGRLDEAYSIITSMEPGEQQVSAWSSLLG 683



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 88/204 (43%), Gaps = 23/204 (11%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEAL-ALYDKLL 416
           V +AL+  Y +CG  D A  +F    T  R+ VS+NS+I+      Q   AL AL D L 
Sbjct: 102 VGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLA 161

Query: 417 QENLKPDSFTFVSVLSACLH--ADLFERGQNHFDSISAVHGITPSLDH------YACMIN 468
           +      SFT VSVL AC H   D   R      + +   G    LD       +  +++
Sbjct: 162 EGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGF---LDEGRERFPFNALLS 218

Query: 469 LLGRSSDVDKAVDLIKSL-----PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           +  R   VD A  L ++      P   + + W+T++S+    G       A   L+++  
Sbjct: 219 MYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAE---AVEVLYDMVS 275

Query: 524 INAGP-YIMLSNMYAACGRWEDVA 546
           +   P  +  ++   AC R E +A
Sbjct: 276 LGVRPDGVTFASALPACSRLEMLA 299


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/675 (34%), Positives = 373/675 (55%), Gaps = 77/675 (11%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            +L+  ++  YA++ +  +A  LF +MP++D++SWN+++        +   R LFD+MP 
Sbjct: 42  VYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCADLTMARKLFDEMPE 101

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R  VS+ T I GF   G    A  +F +M         +  ++A N+            I
Sbjct: 102 RSVVSWTTMINGFLQFGKIEVAEGLFYKMP--------FRDIAAWNS-----------MI 142

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           +G                    Y   G ++    LF  M  RN++SW  MI G  ++G+ 
Sbjct: 143 YG--------------------YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRS 182

Query: 239 KKCIDLFQEMQLLGLN--PDEVTVSNILGAC----------------FQTG--------- 271
           ++ + LF++M   G+   P   T   ++ AC                F+ G         
Sbjct: 183 EEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISA 242

Query: 272 ----------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                     +++D+ R+FH     + V WT ++ GY  N K EDAL +F EM+ E V P
Sbjct: 243 ALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLP 302

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           ++ S +S ++SC  L +L  G+ +H  AV LG++ D+ V ++LI MY +CG  +D   +F
Sbjct: 303 NQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIF 362

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             +  +N+VSWNS+I G AQ+G  + ALA ++++++  ++PD  TF  +LSAC H+ + +
Sbjct: 363 KRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQ 422

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           +G+  F   S        LDHYACM+++LGRS  +++A +LI+++P K NS++W  LLS 
Sbjct: 423 KGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 482

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C M   ++  E AA+ + +LEP  +  Y++LSN+YA+  RW DV+ IR  MK + + K  
Sbjct: 483 CTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQP 542

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
             SWI I    ++F+S DR+HP ++ IY++L  L  KL+E G+ P+ +  LHD ++E+K 
Sbjct: 543 GRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKE 602

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             + YHSE+LA+ + LI    G T I +MKN+RVCGDCH  +K  + I+ R II+RDS R
Sbjct: 603 VMLSYHSERLAIGFGLISTVEGST-ITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTR 661

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF+ G CSC D W
Sbjct: 662 FHHFMDGRCSCGDYW 676



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 189/411 (45%), Gaps = 52/411 (12%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++  ++  C    D+ +A++L   M        TT + N  L F    GK+  A  LF K
Sbjct: 75  SWNSMIKGCFDCADLTMARKLFDEMPERSVVSWTTMI-NGFLQF----GKIEVAEGLFYK 129

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP RDI +WN+++  +  +G V+D   LF +MP R+ +S+ + I G    G S EAL +F
Sbjct: 130 MPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLF 189

Query: 145 SRMQKDRFE--PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
            +M     E  PT  T+   + ACA    L +G QIH  +       + ++  AL   YA
Sbjct: 190 RQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 249

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
              +++ +  +F    + N+V W  +++GY  N + +  + +F EM   G+ P++ + ++
Sbjct: 250 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTS 309

Query: 263 ILGAC-----------------------------------FQTGRIDDAGRLFHVIKEKD 287
            L +C                                   ++ G ++D   +F  I +K+
Sbjct: 310 ALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 369

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-- 345
            V W ++IVG  Q+G    AL  FN+M+   V PD+ + + ++S+C+       G+ +  
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 429

Query: 346 ---HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSW 392
                K+  + +D      + ++D+  + G  ++A  +   MP + N + W
Sbjct: 430 YFSENKSAEVKLDH----YACMVDILGRSGKLEEAEELIRNMPVKANSMVW 476



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 54/279 (19%)

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           RID+A  +F  +   D   +T MI GY +N + + AL LF EM  +DV     S +S++ 
Sbjct: 26  RIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDV----VSWNSMIK 81

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            C   A                   DL ++  L                F+ MP R+VVS
Sbjct: 82  GCFDCA-------------------DLTMARKL----------------FDEMPERSVVS 106

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W +MING+ Q G+   A  L+ K+   ++      + S++         E G   F  + 
Sbjct: 107 WTTMINGFLQFGKIEVAEGLFYKMPFRDIA----AWNSMIYGYCCNGRVEDGLRLFQEMP 162

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-----PHKPNSLIWSTLLSVCAMKG 506
             + I+     +  MI  L +    ++A+ L + +       KP S  +  +++ CA   
Sbjct: 163 CRNVIS-----WTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANAS 217

Query: 507 DIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWED 544
            +  G     H+F+L    +A     L   YA C + ED
Sbjct: 218 ALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMED 256


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 348/624 (55%), Gaps = 34/624 (5%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV-SALN 164
           V+D R +FD+MP +D++ +NT I+G+       E++QVF  +  +     D T +   L 
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           A A+L +LR G QIH          + +V      +Y+K G+I     LF      ++V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-------------GACFQTG 271
           +N MI GY  NG+ +  + LF+E+ L G      T+ +++             G C ++ 
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSN 349

Query: 272 -------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                               I+ A +LF    EK    W  MI GYTQNG  EDA+ LF 
Sbjct: 350 FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           EM   +  P+  +I+ ++S+CA+L +L  G+ VH        +  + VS+ALI MY KCG
Sbjct: 410 EMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              +A  +F++M  +N V+WN+MI+GY  +GQ  EAL ++ ++L   + P   TF+ VL 
Sbjct: 470 SIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLY 529

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L + G   F+S+   +G  PS+ HYACM+++LGR+  + +A+  I+++  +P S
Sbjct: 530 ACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGS 589

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            +W TLL  C +  D       +  LFEL+P N G +++LSN+++A   +   A++R + 
Sbjct: 590 SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTA 649

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K + + K   Y+ IEI    H F S D++HP+ + IYE+L KL  K++EAG+ P T+L L
Sbjct: 650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELAL 709

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
           HD +EEE+   +  HSE+LA+A+ LI    G T IRI+KN+RVC DCH   K  S I  R
Sbjct: 710 HDVEEEERELMVKVHSERLAIAFGLIATEPG-TEIRIIKNLRVCLDCHTVTKLISKITER 768

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RD+NRFHHF  G CSC D W
Sbjct: 769 VIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 211/473 (44%), Gaps = 47/473 (9%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSA 162
           G++   R +F  +   D   +N  + GF+       +L VF+ ++K    +P   T+  A
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++A +   D R G+ IHG+ VV      + + + +  MY K   ++ AR +FDRM  ++ 
Sbjct: 126 ISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEM-----------QLLGLNPDEVTVSNI-LG----- 265
           + WN MISGY KN    + I +F+++            LL + P    +  + LG     
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245

Query: 266 -----ACF--------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                 C+              + G+I     LF   ++ D V +  MI GYT NG+ E 
Sbjct: 246 LATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETEL 305

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           +L LF E++    R    ++ S+V     L  +Y    +HG  +         VS+AL  
Sbjct: 306 SLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHASVSTALTT 362

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y K    + A  +F+  P +++ SWN+MI+GY QNG   +A++L+ ++ +    P+  T
Sbjct: 363 VYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVT 422

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
              +LSAC        G+   D + +      S+     +I +  +   + +A  L   L
Sbjct: 423 ITCILSACAQLGALSLGKWVHDLVRST-DFESSIYVSTALIGMYAKCGSIAEARRLF-DL 480

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYIMLSNMYA 537
             K N + W+T++S   + G    G+ A    +E+    I   P   L  +YA
Sbjct: 481 MTKKNEVTWNTMISGYGLHG---QGQEALNIFYEMLNSGITPTPVTFLCVLYA 530



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 96/172 (55%), Gaps = 8/172 (4%)

Query: 270 TGRIDDAGRLFHV------IKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPD 322
           T R+ D G +++       ++  D   +  ++ G++ N     +L +F  +  S D++P+
Sbjct: 59  TQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPN 118

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             + +  +S+ +       G+V+HG+AVV G D +LL+ S ++ MY K    +DA  VF+
Sbjct: 119 SSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFD 178

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSA 433
            MP ++ + WN+MI+GY +N   +E++ ++  L+ E+  + D+ T + +L A
Sbjct: 179 RMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 35/188 (18%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++  + L K +   +    +E ++ ++   L+  YAK G +  AR LFD M  ++ ++
Sbjct: 430 CAQLGALSLGKWVHDLVRSTDFE-SSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVT 488

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN ++S                               G+   G  +EAL +F  M     
Sbjct: 489 WNTMIS-------------------------------GYGLHGQGQEALNIFYEMLNSGI 517

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKA 210
            PT  T +  L AC+    ++ G +I   + +   G    V++   + D+  + G + +A
Sbjct: 518 TPTPVTFLCVLYACSHAGLVKEGDEIFNSM-IHRYGFEPSVKHYACMVDILGRAGHLQRA 576

Query: 211 RWLFDRMN 218
               + M+
Sbjct: 577 LQFIEAMS 584


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/620 (35%), Positives = 365/620 (58%), Gaps = 36/620 (5%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F  +     +++ + I  F ++     AL  F  M+     P      S L +C  ++D
Sbjct: 61  VFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMD 120

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           LR G+ +HG IV   +  +++  NAL +MY+K   ID  R +F+ M  +++VS+N +I+G
Sbjct: 121 LRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAG 180

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTG---- 271
           Y ++G  +  + + +EM    L PD  T+S++L                G   + G    
Sbjct: 181 YAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSD 240

Query: 272 ---------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                          RI+D+ R+F  +  +D++ W +++ GY QNG+  +AL LF +M+S
Sbjct: 241 VYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVS 300

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             VRP   + SSV+ +CA LA+L+ G+ +HG  +  G   ++ ++SAL+DMY KCG    
Sbjct: 301 AKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQA 360

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ M   + VSW ++I G+A +G   EA++L++++ ++ +KP+   FV+VL+AC H
Sbjct: 361 ARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 420

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
             L +    +F+S++ V+G+   L+HYA + +LLGR+  +++A D I  +  +P   +WS
Sbjct: 421 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWS 480

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           TLLS C++  +++  E  A  +F ++  N G Y+++ NMYA+ GRW+++A +R  ++ K 
Sbjct: 481 TLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKG 540

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           ++K  A SWIE+ NK H FVS DR+HP  + I E L  +++++++ G+  +T  VLHD  
Sbjct: 541 LRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVD 600

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           EE K + +  HSE+LA+A+ +I    G T IR+ KNIR+C DCH+ +KF S I  R II+
Sbjct: 601 EEHKRELLFGHSERLAVAFGIINTEPGTT-IRVTKNIRICTDCHVAIKFISKITEREIIV 659

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD++RFHHF  G+CSC D W
Sbjct: 660 RDNSRFHHFNRGSCSCGDYW 679



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 181/348 (52%), Gaps = 41/348 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + NAL++ +++   +  +R +F+ MP +D VSYNT IAG+A  G   +AL++   M 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P  +T  S L   ++ +D+ +GK+IHG ++   +  +V++ ++L DMYAK   I+
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            +  +F  +  R+ +SWN +++GY++NG+  + + LF++M    + P  V  S+++ AC 
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G I  A ++F  +   D V WT 
Sbjct: 319 HLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTA 378

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
           +I+G+  +G   +A+ LF EM  + V+P++ +  +V+++C+ +  +       +    V 
Sbjct: 379 IIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVY 438

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMIN 397
           G++ +L   +A+ D+  + G  ++A+   + M   PT +V  W+++++
Sbjct: 439 GLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSV--WSTLLS 484



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 157/292 (53%), Gaps = 15/292 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   ++L+  +A+S  ++D   +F  +  RDS+S+N+ +AG+   G   EAL++F +M 
Sbjct: 240 DVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMV 299

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             +  P      S + ACA L  L  GKQ+HG ++ G  G N+F+ +AL DMY+K G I 
Sbjct: 300 SAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQ 359

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRMN  + VSW  +I G+  +G   + + LF+EM+  G+ P++V    +L AC 
Sbjct: 360 AARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 419

Query: 269 QTGRIDDAGRLFHVI-------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
             G +D+A   F+ +       +E ++      ++G  + GK E+A    ++M    V P
Sbjct: 420 HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG--RAGKLEEAYDFISKM---RVEP 474

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCG 372
                S+++SSC+   +L   + V  K  +  +D + + +  L+ +MY   G
Sbjct: 475 TGSVWSTLLSSCSVHKNLELAEKVAEK--IFTIDSENMGAYVLMCNMYASNG 524



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 122/229 (53%), Gaps = 4/229 (1%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + +A  +F  ++    + W ++I  +T       AL  F EM +    PD     SV+ S
Sbjct: 55  LHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKS 114

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C  +  L  G+ VHG  V LG+D DL   +AL++MY K    D    VF +MP ++VVS+
Sbjct: 115 CTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSY 174

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA-CLHADLFERGQNHFDSIS 451
           N++I GYAQ+G   +AL +  ++   +LKPD+FT  SVL     + D+ +  + H   I 
Sbjct: 175 NTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIR 234

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
              GI   +   + ++++  +S+ ++ +  +   L ++ +S+ W++L++
Sbjct: 235 K--GIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWNSLVA 280



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 99/238 (41%), Gaps = 45/238 (18%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A++ ++  C  +  + L K+L  ++    +  N  F+ + L+  Y+K G +  AR +FD+
Sbjct: 309 AFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNI-FIASALVDMYSKCGNIQAARKIFDR 367

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSREA 140
           M L D +SW A++  HA  G   +  +LF++M  +    + V++   +   ++ G   EA
Sbjct: 368 MNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 427

Query: 141 LQVFSRM---------------------------------QKDRFEPTDYTHVSALNACA 167
              F+ M                                  K R EPT     + L++C+
Sbjct: 428 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCS 487

Query: 168 QLLDLRRGKQIHGKIVV---GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
              +L   +++  KI      N+G  V + N    MYA  G   +   L  R+  + L
Sbjct: 488 VHKNLELAEKVAEKIFTIDSENMGAYVLMCN----MYASNGRWKEMAKLRLRVRKKGL 541


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 362/618 (58%), Gaps = 45/618 (7%)

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
            S+N+ IA  A  G S EAL+ FS ++K    PT  +    + +C+ L DL  G+  H + 
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 1168

Query: 183  VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
             V     ++FV +AL DMY+K G++  AR LFD +  RN+VSW  MI+GY++N Q    +
Sbjct: 1169 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 1228

Query: 243  DLF-----QEMQLLGLNP---DEVTVSNILGACFQT------------------------ 270
             LF     +E ++   N    D V + ++L AC +                         
Sbjct: 1229 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 1288

Query: 271  -----------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-D 318
                       G+   + ++F  ++EKD++ W +MI  Y Q+G   +AL +F+ M+    
Sbjct: 1289 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG 1348

Query: 319  VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
            VR +  ++S+V+ +CA   +L  G+ +H + + + ++ ++ V +++IDMYCKCG  + A 
Sbjct: 1349 VRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAK 1408

Query: 379  TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
              F+ M  +NV SW +M+ GY  +G+  EAL ++ K+++  +KP+  TFVSVL+AC HA 
Sbjct: 1409 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 1468

Query: 439  LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            L E G + F+++   + I P ++HY CM++L GR+  +++A +LIK +  KP+ ++W +L
Sbjct: 1469 LVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSL 1528

Query: 499  LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
            L  C +  ++  GE+AA+ LFEL+P N G Y++LSN+YA  GRW DV  +R  MK++ + 
Sbjct: 1529 LGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 1588

Query: 559  KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
            K   +S +E+  +VH F+  D+ HP  E+IY+ L KL  +LQ+ G+ PN   VLHD  EE
Sbjct: 1589 KPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 1648

Query: 619  EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
            EK   +  HSEKLA+A+ ++    G T I I+KN+RVCGDCH  +K  S ++ R  ++RD
Sbjct: 1649 EKEIILRVHSEKLAVAFGVMNSAPGTT-INIIKNLRVCGDCHTVIKLISKLVHRDFVVRD 1707

Query: 679  SNRFHHFVGGNCSCKDNW 696
            S RFHHF  G CSC D W
Sbjct: 1708 SKRFHHFKDGVCSCGDYW 1725



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 211/436 (48%), Gaps = 66/436 (15%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   L  +L+H Y+  G++ YA  LF ++      +WN ++ A                 
Sbjct: 57  NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA----------------- 99

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                   NT        G S +AL ++  M         +T    + AC   L +  GK
Sbjct: 100 --------NTI------NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGK 145

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            +HG ++     G+VFV+N L D Y K G    A  +F++M  RN+VSW  +ISG +   
Sbjct: 146 VVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI--- 202

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                        +C   G + +A R+F  I  K+ V WT MI 
Sbjct: 203 -----------------------------SC---GDLQEARRIFDEIPSKNVVSWTAMIN 230

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY +N + E+AL LF  M +E++ P+++++ S++ +C ++  L  G+ +H  A+   ++ 
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI 290

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            + + +ALIDMY KCG   DA  VF  MP +++ +WNSMI     +G   EAL L+ ++ 
Sbjct: 291 GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 350

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           + N+KPD+ TF+ VL AC+H    + G  +F  ++  +GI P  +HY CM  L  RS+++
Sbjct: 351 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 410

Query: 477 DKAVDLIKSLPHKPNS 492
           D+A    K +    NS
Sbjct: 411 DEAFKSTKEVGSLANS 426



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 142/267 (53%), Gaps = 1/267 (0%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  +G AA +  +  ++  CT    ++L K +   + + +      F+ N L+ FY K G
Sbjct: 116 MVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQNNLIDFYFKCG 174

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
              +A  +F+KM +R+++SW  ++S     G +Q+ R +FD++P ++ VS+   I G+  
Sbjct: 175 HTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR 234

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
                EAL++F RMQ +   P +YT VS + AC ++  L  G+ IH   +   +   V++
Sbjct: 235 NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYL 294

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             AL DMY+K G I  A  +F+ M  ++L +WN MI+    +G  ++ ++LF EM+ + +
Sbjct: 295 GTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNV 354

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLF 280
            PD +T   +L AC     + +    F
Sbjct: 355 KPDAITFIGVLCACVHIKNVKEGCAYF 381



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 195/401 (48%), Gaps = 59/401 (14%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+   +AL+  +++ G ++D RALFD++P+R+ VS+ + I G+     +  AL +F    
Sbjct: 1176 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 1235

Query: 149  KDRFEPTD--------YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
            ++  E  D           VS L+AC+++      + +HG +V     G++ V N L D 
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVT 259
            YAK G+   ++ +FD M  ++ +SWN MI+ Y ++G   + +++F  M + +G+  + VT
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355

Query: 260  VSNILGACF-----------------------------------QTGRIDDAGRLFHVIK 284
            +S +L AC                                    + GR++ A + F  +K
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415

Query: 285  EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-- 342
            EK+   WT M+ GY  +G+ ++AL +F +M+   V+P+  +  SV+++C+    +  G  
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475

Query: 343  ---QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
                + H   +  G++        ++D++ + G  ++A+ +   M  + + V W S++  
Sbjct: 1476 WFNAMKHKYDIEPGIEH----YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531

Query: 399  -YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
                   DL  +A   KL +  L PD+  +  +LS  L+AD
Sbjct: 1532 CRIHKNVDLGEIAA-QKLFE--LDPDNCGYYVLLSN-LYAD 1568



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 179/409 (43%), Gaps = 56/409 (13%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL+ D++    ++      GRI  A  LF+ I+      W  +I   T NG  E AL+L+
Sbjct: 54  GLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLY 113

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M+ + +  DKF+   V+ +C    S+  G+VVHG  +  G   D+ V + LID Y KC
Sbjct: 114 KNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173

Query: 372 GVTDDAWTVFNMMPTRNVVSWNS-------------------------------MINGYA 400
           G T  A  VF  M  RNVVSW +                               MINGY 
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           +N Q  EAL L+ ++  EN+ P+ +T VS++ AC    +   G+   D  +  + I   +
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-YAIKNCIEIGV 292

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
                +I++  +   +  A+++ +++P K +   W+++++   + G    G+ A     E
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSE 348

Query: 521 LEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
           +E +N  P  I    +  AC            +  KNVK+  AY         H  ++  
Sbjct: 349 MERVNVKPDAITFIGVLCAC------------VHIKNVKEGCAYF---TRMTQHYGIAPI 393

Query: 580 RTHPE--TEIIYEE--LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
             H E  TE+      L +  K  +E G   N+  +  D + ++ V SI
Sbjct: 394 PEHYECMTELYARSNNLDEAFKSTKEVGSLANSPSICFDARAKQAVLSI 442



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 164/377 (43%), Gaps = 70/377 (18%)

Query: 280  FHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
            F+   +K NV  W ++I    + G   +AL  F+ +    + P + S    + SC+ L  
Sbjct: 1098 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 1157

Query: 339  LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
            L  G++ H +A V G + DL VSSALIDMY KCG   DA  +F+ +P RNVVSW SMI G
Sbjct: 1158 LVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITG 1217

Query: 399  YAQNGQDLEALALYDKLLQE--------NLKPDSFTFVSVLSAC-----------LHADL 439
            Y QN Q   AL L+   L+E        N+  DS   VSVLSAC           +H  +
Sbjct: 1218 YVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFV 1277

Query: 440  FERGQNHFDSISAVHGITPSLDHYA------------------------CMINLLGRSSD 475
             ++G   FD    V      +D YA                         MI +  +S  
Sbjct: 1278 VKKG---FDGSIGVGNTL--MDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 476  VDKAVD----LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYI 530
              +A++    +++ +  + N++  S +L  CA  G ++ G+     + +++   N     
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 531  MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
             + +MY  CGR E        MK KNVK     SW  +   V  +    R     +I Y 
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVK-----SWTAM---VAGYGMHGRAKEALDIFY- 1443

Query: 591  ELSKLIKKLQEAGFSPN 607
                   K+  AG  PN
Sbjct: 1444 -------KMVRAGVKPN 1453



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 10/303 (3%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L+ A+A+ G     + +FD M  +D +S+N+ IA +A  G S EAL+VF  M +    
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 154  PTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
              +   +SA L ACA    LR GK IH +++  +L  NV V  ++ DMY K G ++ A+ 
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 213  LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
             FDRM  +N+ SW  M++GY  +G+ K+ +D+F +M   G+ P+ +T  ++L AC   G 
Sbjct: 1410 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 1469

Query: 273  IDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            +++    F+ +K K ++      +  M+  + + G   +A  L   M    ++PD     
Sbjct: 1470 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWG 1526

Query: 328  SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            S++ +C    ++  G++   K   L   D+      L ++Y   G   D   +  +M  R
Sbjct: 1527 SLLGACRIHKNVDLGEIAAQKLFELD-PDNCGYYVLLSNLYADAGRWADVERMRMLMKNR 1585

Query: 388  NVV 390
             +V
Sbjct: 1586 QLV 1588



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           H + +H K +  G+ +D L++  LI +Y   G    A  +F  +      +WN +I    
Sbjct: 42  HLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANT 101

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            NG   +AL LY  ++ + +  D FTF  V+ AC +    + G+    S+   +G +  +
Sbjct: 102 INGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDV 160

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF- 519
                +I+   +      A+ + + +  + N + W+T++S     GD++     AR +F 
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQE----ARRIFD 215

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E+   N   +  + N Y    + E+   +   M+++N+
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/642 (37%), Positives = 361/642 (56%), Gaps = 32/642 (4%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           + +N LLH  A S  L  AR LFD+MP+RD +++N ++S+HA  G V   R  FD  P +
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEK 160

Query: 120 DSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFE----PTDYTHVSALNACAQLLD--- 171
           D+VS+N  +A +   G   EA  +F SR + D        + Y     ++   +L D   
Sbjct: 161 DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMP 220

Query: 172 --------------LRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDR 216
                          RRG  +  + +       +VF   A+   YA+ G +++AR +FD 
Sbjct: 221 GRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDA 280

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  RN VSWN M++ Y++     +  +LF  M    +     + + +L    Q G +++A
Sbjct: 281 MPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEA 336

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +F  + +KD V W  M+  Y+Q G  E+ L LF EM       ++ + + V+S+CA +
Sbjct: 337 KAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADI 396

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           A+L  G  +HG+ +  G      V +AL+ MY KCG  +DA   F  M  R+VVSWN+MI
Sbjct: 397 AALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMI 456

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            GYA++G   EAL ++D +   + KPD  T V VL+AC H+ L E+G ++F S+    G+
Sbjct: 457 AGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGV 516

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           T   +HY CMI+LLGR+  + +A DL+K +P +P+S +W  LL    +  + + G  AA 
Sbjct: 517 TAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAE 576

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            +FELEP NAG Y++LSN+YA+ G+W D   +R  M+ + VKK   +SWIE+ NKVH F 
Sbjct: 577 KIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFS 636

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + D  HPE E IY  L  L  ++++AG+   T +VLHD +EEEK   + YHSEKLA+AY 
Sbjct: 637 AGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYG 696

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCH----LFMKFASDIIGRTI 674
           ++  P G  PIR++KN+RVCGDCH     +++    + GRT 
Sbjct: 697 ILNIPPG-RPIRVIKNLRVCGDCHNAFKAWIELMLKVSGRTF 737



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 26/346 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++I  N  ++AH R+G V D   LF  MP R + +YN  +AG++  G    A  +F  + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIP 96

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P +Y++ + L+A A    L   + +  ++ V     +    N +   +A  G + 
Sbjct: 97  R----PDNYSYNTLLHALAVSSSLADARGLFDEMPV----RDSVTYNVMISSHANHGLVS 148

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR  FD    ++ VSWN M++ Y++NG+ ++   LF          D ++ + ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEW----DVISWNALMSGYV 204

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           Q G++ +A  LF  +  +D V W  M+ GY + G   +A  LF+     DV    F+ ++
Sbjct: 205 QWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTA 260

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPTR 387
           VVS  A+     +G +   + V   + +   VS +A++  Y +  + D+A  +FNMMP R
Sbjct: 261 VVSGYAQ-----NGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCR 315

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           NV SWN+M+ GYAQ G   EA A++D + Q+    D+ ++ ++L+A
Sbjct: 316 NVASWNTMLTGYAQAGMLEEAKAVFDTMPQK----DAVSWAAMLAA 357



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/422 (25%), Positives = 182/422 (43%), Gaps = 75/422 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+ +  + ++G++  A  LF  MP R   ++NA+L+ ++ +G +    +LF  +P  D+ 
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAIPRPDNY 101

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-------- 174
           SYNT +   A      +A  +F  M     +   Y  + + +A   L+ L R        
Sbjct: 102 SYNTLLHALAVSSSLADARGLFDEMPVR--DSVTYNVMISSHANHGLVSLARHYFDLAPE 159

Query: 175 --GKQIHGKIVVGNLGG---------------NVFVRNALTDMYAKGGEIDKARWLFDRM 217
                 +G +      G               +V   NAL   Y + G++ +AR LFDRM
Sbjct: 160 KDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRM 219

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP--DEVTVSNILGACFQTGRIDD 275
             R++VSWN+M+SGY + G      D+ +  +L    P  D  T + ++    Q G +++
Sbjct: 220 PGRDVVSWNIMVSGYARRG------DMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEE 273

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F  + E++ V W  M+  Y Q    ++A  LFN M                  C  
Sbjct: 274 ARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMM-----------------PCRN 316

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +AS                       + ++  Y + G+ ++A  VF+ MP ++ VSW +M
Sbjct: 317 VASW----------------------NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAM 354

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVH 454
           +  Y+Q G   E L L+ ++ +     +   F  VLS C      E G Q H   I A +
Sbjct: 355 LAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGY 414

Query: 455 GI 456
           G+
Sbjct: 415 GV 416



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 159/341 (46%), Gaps = 30/341 (8%)

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G L   V   N     + + G +  A  LF  M  R+  ++N M++GY  NG+      L
Sbjct: 32  GRLEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASL 91

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F+ +      PD  + + +L A   +  + DA  LF  +  +D+V +  MI  +  +G  
Sbjct: 92  FRAIP----RPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLV 147

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDD-DLLVSS 362
             A   F      D+ P+K      VS    LA+ + +G+V   + +     + D++  +
Sbjct: 148 SLARHYF------DLAPEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWN 197

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+  Y + G   +A  +F+ MP R+VVSWN M++GYA+ G  +EA  L+D         
Sbjct: 198 ALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVR---- 253

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D FT+ +V+S      + E  +  FD++   + ++     +  M+    +   +D+A +L
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVS-----WNAMVAAYIQRRMMDEAKEL 308

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
              +P + N   W+T+L+  A  G ++     A+ +F+  P
Sbjct: 309 FNMMPCR-NVASWNTMLTGYAQAGMLEE----AKAVFDTMP 344


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 362/618 (58%), Gaps = 45/618 (7%)

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
            S+N+ IA  A  G S EAL+ FS ++K    PT  +    + +C+ L DL  G+  H + 
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQA 2041

Query: 183  VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
             V     ++FV +AL DMY+K G++  AR LFD +  RN+VSW  MI+GY++N Q    +
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 243  DLF-----QEMQLLGLNP---DEVTVSNILGACFQT------------------------ 270
             LF     +E ++   N    D V + ++L AC +                         
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGV 2161

Query: 271  -----------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-D 318
                       G+   + ++F  ++EKD++ W +MI  Y Q+G   +AL +F+ M+    
Sbjct: 2162 GNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVG 2221

Query: 319  VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
            VR +  ++S+V+ +CA   +L  G+ +H + + + ++ ++ V +++IDMYCKCG  + A 
Sbjct: 2222 VRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAK 2281

Query: 379  TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
              F+ M  +NV SW +M+ GY  +G+  EAL ++ K+++  +KP+  TFVSVL+AC HA 
Sbjct: 2282 KTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAG 2341

Query: 439  LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            L E G + F+++   + I P ++HY CM++L GR+  +++A +LIK +  KP+ ++W +L
Sbjct: 2342 LVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSL 2401

Query: 499  LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
            L  C +  ++  GE+AA+ LFEL+P N G Y++LSN+YA  GRW DV  +R  MK++ + 
Sbjct: 2402 LGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLV 2461

Query: 559  KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
            K   +S +E+  +VH F+  D+ HP  E+IY+ L KL  +LQ+ G+ PN   VLHD  EE
Sbjct: 2462 KPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEE 2521

Query: 619  EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
            EK   +  HSEKLA+A+ ++    G T I I+KN+RVCGDCH  +K  S ++ R  ++RD
Sbjct: 2522 EKEIILRVHSEKLAVAFGVMNSAPGTT-INIIKNLRVCGDCHTVIKLISKLVHRDFVVRD 2580

Query: 679  SNRFHHFVGGNCSCKDNW 696
            S RFHHF  G CSC D W
Sbjct: 2581 SKRFHHFKDGVCSCGDYW 2598



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 211/436 (48%), Gaps = 66/436 (15%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   L  +L+H Y+  G++ YA  LF ++      +WN ++ A                 
Sbjct: 57  NDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRA----------------- 99

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                   NT        G S +AL ++  M         +T    + AC   L +  GK
Sbjct: 100 --------NTI------NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGK 145

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            +HG ++     G+VFV+N L D Y K G    A  +F++M  RN+VSW  +ISG +   
Sbjct: 146 VVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLI--- 202

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                        +C   G + +A R+F  I  K+ V WT MI 
Sbjct: 203 -----------------------------SC---GDLQEARRIFDEIPSKNVVSWTAMIN 230

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY +N + E+AL LF  M +E++ P+++++ S++ +C ++  L  G+ +H  A+   ++ 
Sbjct: 231 GYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEI 290

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            + + +ALIDMY KCG   DA  VF  MP +++ +WNSMI     +G   EAL L+ ++ 
Sbjct: 291 GVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEME 350

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           + N+KPD+ TF+ VL AC+H    + G  +F  ++  +GI P  +HY CM  L  RS+++
Sbjct: 351 RVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNL 410

Query: 477 DKAVDLIKSLPHKPNS 492
           D+A    K +    NS
Sbjct: 411 DEAFKSTKEVGSLANS 426



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 141/264 (53%), Gaps = 1/264 (0%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           +G AA +  +  ++  CT    ++L K +   + + +      F+ N L+ FY K G   
Sbjct: 119 QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSL-IKYGFSGDVFVQNNLIDFYFKCGHTR 177

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           +A  +F+KM +R+++SW  ++S     G +Q+ R +FD++P ++ VS+   I G+     
Sbjct: 178 FALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQ 237

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             EAL++F RMQ +   P +YT VS + AC ++  L  G+ IH   +   +   V++  A
Sbjct: 238 PEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTA 297

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY+K G I  A  +F+ M  ++L +WN MI+    +G  ++ ++LF EM+ + + PD
Sbjct: 298 LIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPD 357

Query: 257 EVTVSNILGACFQTGRIDDAGRLF 280
            +T   +L AC     + +    F
Sbjct: 358 AITFIGVLCACVHIKNVKEGCAYF 381



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 195/401 (48%), Gaps = 59/401 (14%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            D+   +AL+  +++ G ++D RALFD++P+R+ VS+ + I G+     +  AL +F    
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFL 2108

Query: 149  KDRFEPTD--------YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
            ++  E  D           VS L+AC+++      + +HG +V     G++ V N L D 
Sbjct: 2109 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 2168

Query: 201  YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVT 259
            YAK G+   ++ +FD M  ++ +SWN MI+ Y ++G   + +++F  M + +G+  + VT
Sbjct: 2169 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 2228

Query: 260  VSNILGACF-----------------------------------QTGRIDDAGRLFHVIK 284
            +S +L AC                                    + GR++ A + F  +K
Sbjct: 2229 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 2288

Query: 285  EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-- 342
            EK+   WT M+ GY  +G+ ++AL +F +M+   V+P+  +  SV+++C+    +  G  
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348

Query: 343  ---QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
                + H   +  G++        ++D++ + G  ++A+ +   M  + + V W S++  
Sbjct: 2349 WFNAMKHKYDIEPGIEH----YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404

Query: 399  -YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
                   DL  +A   KL +  L PD+  +  +LS  L+AD
Sbjct: 2405 CRIHKNVDLGEIAA-QKLFE--LDPDNCGYYVLLSN-LYAD 2441



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 176/403 (43%), Gaps = 73/403 (18%)

Query: 256  DEVTVSNILGACFQTGRIDDA--GRLFHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFN 312
            D +T ++IL     +GR D +     F+   +K NV  W ++I    + G   +AL  F+
Sbjct: 1946 DGITYNSILFGV-PSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFS 2004

Query: 313  EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
             +    + P + S    + SC+ L  L  G++ H +A V G + DL VSSALIDMY KCG
Sbjct: 2005 SLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCG 2064

Query: 373  VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--------NLKPDS 424
               DA  +F+ +P RNVVSW SMI GY QN Q   AL L+   L+E        N+  DS
Sbjct: 2065 QLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDS 2124

Query: 425  FTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYA--------- 464
               VSVLSAC           +H  + ++G   FD    V      +D YA         
Sbjct: 2125 VVMVSVLSACSRVSGKGITEGVHGFVVKKG---FDGSIGVGNTL--MDAYAKCGQPLVSK 2179

Query: 465  ---------------CMINLLGRSSDVDKAVD----LIKSLPHKPNSLIWSTLLSVCAMK 505
                            MI +  +S    +A++    +++ +  + N++  S +L  CA  
Sbjct: 2180 KVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHA 2239

Query: 506  GDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
            G ++ G+     + +++   N      + +MY  CGR E        MK KNVK     S
Sbjct: 2240 GALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVK-----S 2294

Query: 565  WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            W  +   V  +    R     +I Y        K+  AG  PN
Sbjct: 2295 WTAM---VAGYGMHGRAKEALDIFY--------KMVRAGVKPN 2326



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 155/344 (45%), Gaps = 49/344 (14%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL+ D++    ++      GRI  A  LF+ I+      W  +I   T NG  E AL+L+
Sbjct: 54  GLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLY 113

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M+ + +  DKF+   V+ +C    S+  G+VVHG  +  G   D+ V + LID Y KC
Sbjct: 114 KNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKC 173

Query: 372 GVTDDAWTVFNMMPTRNVVSWNS-------------------------------MINGYA 400
           G T  A  VF  M  RNVVSW +                               MINGY 
Sbjct: 174 GHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYI 233

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           +N Q  EAL L+ ++  EN+ P+ +T VS++ AC    +   G+   D  +  + I   +
Sbjct: 234 RNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHD-YAIKNCIEIGV 292

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
                +I++  +   +  A+++ +++P K +   W+++++   + G    G+ A     E
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLGVHG---LGQEALNLFSE 348

Query: 521 LEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           +E +N  P  I    +  AC            +  KNVK+  AY
Sbjct: 349 MERVNVKPDAITFIGVLCAC------------VHIKNVKEGCAY 380



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 10/303 (3%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L+ A+A+ G     + +FD M  +D +S+N+ IA +A  G S EAL+VF  M +    
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 154  PTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
              +   +SA L ACA    LR GK IH +++  +L  NV V  ++ DMY K G ++ A+ 
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 213  LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
             FDRM  +N+ SW  M++GY  +G+ K+ +D+F +M   G+ P+ +T  ++L AC   G 
Sbjct: 2283 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 2342

Query: 273  IDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            +++    F+ +K K ++      +  M+  + + G   +A  L   M    ++PD     
Sbjct: 2343 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWG 2399

Query: 328  SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            S++ +C    ++  G++   K   L   D+      L ++Y   G   D   +  +M  R
Sbjct: 2400 SLLGACRIHKNVDLGEIAAQKLFELD-PDNCGYYVLLSNLYADAGRWADVERMRMLMKNR 2458

Query: 388  NVV 390
             +V
Sbjct: 2459 QLV 2461



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           H + +H K +  G+ +D L++  LI +Y   G    A  +F  +      +WN +I    
Sbjct: 42  HLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANT 101

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            NG   +AL LY  ++ + +  D FTF  V+ AC +    + G+    S+   +G +  +
Sbjct: 102 INGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIK-YGFSGDV 160

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF- 519
                +I+   +      A+ + + +  + N + W+T++S     GD++     AR +F 
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTTVISGLISCGDLQE----ARRIFD 215

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E+   N   +  + N Y    + E+   +   M+++N+
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/614 (36%), Positives = 356/614 (57%), Gaps = 38/614 (6%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           D +++N+ +  F N    R ALQ ++ M ++ R  P  +T  S L  CA LL+ + GK +
Sbjct: 42  DVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVL 101

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG++V   L  ++++   L +MYA  G++  AR+LF+RM +RN V W  MISGY+KN  P
Sbjct: 102 HGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCP 161

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
            + + L+++M+  G +PDEVT++ ++ AC +                             
Sbjct: 162 NEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSAL 221

Query: 270 ------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPD 322
                  G +  A ++F  + +KD   W+ +I GY +N +  +AL LF E+    ++RP+
Sbjct: 222 VNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPN 281

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           + +I +V+S+CA+L  L  G+ VH           + ++++LIDM+ KCG  D A  +F+
Sbjct: 282 EVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFD 341

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M  ++++SWNSM+NG+A +G   EALA +  +   +L+PD  TF+ VL+AC HA L + 
Sbjct: 342 SMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQE 401

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+  F  I A++G+    +HY CM++LL R+  + +A + I+ +P +P+  IW ++L  C
Sbjct: 402 GKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC 461

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  +++ GE AAR L +LEP N G YI+LSN+YA    W +V  +R  M  K ++K   
Sbjct: 462 RVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPG 521

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            S + IDN  H F++ D +HPE   I   L ++ +KL+ AG+  +T  VL +  + +K +
Sbjct: 522 CSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEE 581

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
           S+  HSEKLAL Y L+K   G   I I+KN+RVC DCH  +K  S I  R I LRD NRF
Sbjct: 582 SVSQHSEKLALCYGLLKSEIG-GRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRF 640

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G+CSC+D W
Sbjct: 641 HHFKDGSCSCRDYW 654


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 246/684 (35%), Positives = 381/684 (55%), Gaps = 47/684 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++T+L N  ++ Y+K G+L YAR  F      ++ S+N ++ A+A+   +   R LFD++
Sbjct: 41  SSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEI 100

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  D+VSYNT I+G+A+   +  A+ +F RM+K  FE   +T    + AC   +DL   K
Sbjct: 101 PQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLI--K 158

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKN 235
           Q+H   V G       V NA    Y+KGG + +A  +F  M+  R+ VSWN MI  Y ++
Sbjct: 159 QLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQH 218

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------FQ 269
            +  K + L++EM   G   D  T++++L A                             
Sbjct: 219 KEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVG 278

Query: 270 TGRID------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLS 316
           +G ID            D+ ++F  I   D V W TMI GY+ N +  E+A+  F +M  
Sbjct: 279 SGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQR 338

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTD 375
              RPD  S   V S+C+ L+S    + +HG A+   +  + + V++ALI +Y K G   
Sbjct: 339 IGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQ 398

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           DA  VF+ MP  N VS+N MI GYAQ+G   EAL LY ++L   + P+  TFV+VLSAC 
Sbjct: 399 DARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACA 458

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           H    + GQ +F+++     I P  +HY+CMI+LLGR+  +++A   I ++P+KP S+ W
Sbjct: 459 HCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAW 518

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           + LL  C    ++   E AA  L  ++P+ A PY+ML+NMYA   +WE++AS+R SM+ K
Sbjct: 519 AALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGK 578

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL--- 612
            ++K    SWIE+  K H FV+ED +HP    + E L +++KK+++ G+  + K  +   
Sbjct: 579 RIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKE 638

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            +  E ++   + +HSEKLA+A+ L+    G   + ++KN+R+CGDCH  +KF S + GR
Sbjct: 639 DEAGEGDEEMRLGHHSEKLAVAFGLMSTRDG-EELVVVKNLRICGDCHNAIKFMSAVAGR 697

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            II+RD+ RFH F  G CSC D W
Sbjct: 698 EIIVRDNLRFHCFKDGKCSCGDYW 721



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 36/228 (15%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ ++     K++      +    N   ++N L+  Y KSG L  AR +FD+MP  + +S
Sbjct: 355 CSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVS 414

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           +N +                               I G+A  G   EAL ++ RM     
Sbjct: 415 FNCM-------------------------------IKGYAQHGHGTEALLLYQRMLDSGI 443

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            P   T V+ L+ACA    +  G++    +     +       + + D+  + G++++A 
Sbjct: 444 APNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDLLGRAGKLEEAE 503

Query: 212 WLFDRMNNR-NLVSWNLMISGYLKNGQ---PKKCIDLFQEMQLLGLNP 255
              D M  +   V+W  ++    K+      ++  +    MQ L   P
Sbjct: 504 RFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATP 551



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 83/193 (43%), Gaps = 36/193 (18%)

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG----------VTDD------------ 376
           L+ G+ +H   V   V     +S+  +++Y KCG           T++            
Sbjct: 24  LFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKA 83

Query: 377 ---------AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
                    A  +F+ +P  + VS+N++I+GYA   +   A+ L+ ++ +   + D FT 
Sbjct: 84  YAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFEVDGFTL 143

Query: 428 VSVLSACL-HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
             +++AC    DL +  Q H  S+S       S+++    +    +   + +AV +   +
Sbjct: 144 SGLIAACCDRVDLIK--QLHCFSVSGGFDSYSSVNN--AFVTYYSKGGLLREAVSVFYGM 199

Query: 487 PHKPNSLIWSTLL 499
               + + W++++
Sbjct: 200 DELRDEVSWNSMI 212


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/638 (35%), Positives = 362/638 (56%), Gaps = 37/638 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+H Y + G    AR  FD++ ++D ++W  L+S  A+ G + D + L  + P+R
Sbjct: 143 FVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVR 202

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +S+ + IA ++    +REA+  F  M      P + T ++ L+ACA+L DL  G+ +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
             +    +  +  +  AL DMYAK G+   A+ +FD +       SWN +I GY K+G  
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGH- 321

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                             +D A  LF  ++ +D + + +M+ GY
Sbjct: 322 ----------------------------------VDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL+LF  M   D+R D F++ +++++CA L +L  G+ +H       V+ D+
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADI 407

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +AL+DMY KCG  D+A  VF  M  R+V +W +MI G A NG    AL  + ++  +
Sbjct: 408 YLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCD 467

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +P+S ++++VL+AC H+ L   G+ +FD +  ++ I P ++HY CMI+LLGRS  +D+
Sbjct: 468 GFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 527

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+DL+K++P +PN++IW+++LS C +   I   + AA HL +LEP   G Y+ L N+Y  
Sbjct: 528 AMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYID 587

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +WE+ + IR  M+ + VKK A YS I +  +VHKFV  D++HP    I   L ++  +
Sbjct: 588 SRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHR 647

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+  G+SP T  +  D  EEEK +++  HSEKLA+A+ LI     + P+ I KN+RVC D
Sbjct: 648 LKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL-PVHIRKNLRVCED 706

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH  +K  S +  R II+RD +RFHHF  G CSC D W
Sbjct: 707 CHSAIKLISRLWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 180/341 (52%), Gaps = 21/341 (6%)

Query: 6   KLRQAI---DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           + R+A+    T+ S G A  E     ++  C ++ D+EL + L   ++     P +  L 
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM-PTSENLV 277

Query: 63  NRLLHFYAKSGKLFYARDLFDKM---PLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
             L+  YAK G   +A+ +FD +   P     SWNA++  + + G V   R+LFD+M +R
Sbjct: 278 VALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVR 335

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +++N+ + G+ + G  REAL +F  M++      ++T V+ L ACA L  L++G+ +H
Sbjct: 336 DIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALH 395

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I    +  ++++  AL DMY K G +D+A  +F RM  R++ +W  MI+G   NG  K
Sbjct: 396 ACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGK 455

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI--DDAGRLFHVIKEKDNVCWT 292
             ++ F +M+  G  P+ V+   +L AC        GR+  D+   L+++  + ++  + 
Sbjct: 456 AALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH--YG 513

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            MI    ++G  ++A+ L   M    ++P+    +S++S+C
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 43/288 (14%)

Query: 308 LILFNEMLSEDVRPDKFS---ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSA 363
            +LF  M    VRPD F+   +    SS ++  SL    ++H   +  +       VS++
Sbjct: 88  FLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNS 147

Query: 364 LIDMYCKCGVTDDA--------------WT-----------------VFNMMPTRNVVSW 392
           LI MY + G+  DA              WT                 + +  P R+V+SW
Sbjct: 148 LIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW 207

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            S+I  Y++  +  EA+  +  +L   + PD  T ++VLSAC      E G++    +  
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVE 266

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
             G+  S +    +I++  +  D   A  +  +L   P    W+ ++      G  KHG 
Sbjct: 267 EKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID-----GYCKHGH 321

Query: 513 M-AARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           +  AR LF E+E  +   +  +   Y   G+  +   +  SM+  +++
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/626 (38%), Positives = 348/626 (55%), Gaps = 42/626 (6%)

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNAC 166
           D R +FD +P  D+V +NT +AG +      EAL+ F RM       P   T  S L A 
Sbjct: 176 DARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAA 231

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           A++ +   G+ +H       L  +  V   L  +YAK G+++ AR LFDRM   +LV++N
Sbjct: 232 AEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYN 291

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI-----------LGACFQT----- 270
            +ISGY  NG     ++LF+E+  +GL P   T+  +           L  C        
Sbjct: 292 ALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKA 351

Query: 271 -------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                                +D A R F  + EK    W  MI GY QNG  E A+ LF
Sbjct: 352 GLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALF 411

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            +M + +VRP+  +ISS +S+CA+L +L  G+ VH       ++ ++ V +ALIDMY KC
Sbjct: 412 QQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKC 471

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   +A  +F+ M  +NVVSWN MI+GY  +GQ  EAL LY  ++  +L P S TF+SVL
Sbjct: 472 GSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVL 531

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP- 490
            AC H  L + G   F S+++ +GITP ++H  CM++LLGR+  + +A +LI   P    
Sbjct: 532 YACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 591

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
              IW  LL  C +  D    ++A++ LFELEP N G Y++LSN+Y +  ++ + A +R 
Sbjct: 592 GPGIWGALLGACMVHKDGDLAKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQ 651

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
             KS+ + K    + IEI ++ H F++ DR HP+++ IY  L KL  K+ EAG+ P+T+ 
Sbjct: 652 EAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEA 711

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
            L+D +EEEK   +  HSEKLA+A+ L+    G T IRI+KN+RVC DCH   K  S + 
Sbjct: 712 ALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPG-TEIRIIKNLRVCLDCHNATKIISKVT 770

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
            R I++RD++RFHHF  G CSC D W
Sbjct: 771 QRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 172/383 (44%), Gaps = 52/383 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
             L+S +A+ G ++  R LFD+M   D V+YN  I+G++  G    ++++F  +      
Sbjct: 260 TGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLR 319

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P+  T V+ +   +          +H  +V   L  N  V  ALT +Y +  ++D AR  
Sbjct: 320 PSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRA 379

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ---- 269
           FD M  + + SWN MISGY +NG  +  + LFQ+MQ L + P+ +T+S+ L AC Q    
Sbjct: 380 FDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGAL 439

Query: 270 -------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G I +A  +F  +  K+ V W  MI GY
Sbjct: 440 SLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGY 499

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL L+ +M+   + P   +  SV+ +C+     + G V  G  V   +  D 
Sbjct: 500 GLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACS-----HGGLVKEGTTVFRSMTSDY 554

Query: 359 LVS------SALIDMYCKCGVTDDAWTVFNMMPTRNVVS--WNSMING-YAQNGQDLEAL 409
            ++      + ++D+  + G   +A+ + +  P   V    W +++         DL  L
Sbjct: 555 GITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKL 614

Query: 410 ALYDKLLQENLKPDSFTFVSVLS 432
           A   KL +  L+P++  +  +LS
Sbjct: 615 A-SQKLFE--LEPENTGYYVLLS 634



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 134/303 (44%), Gaps = 36/303 (11%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY--- 232
           + +H   V      + FV +AL  +Y      + AR +FD + + + V WN +++G    
Sbjct: 143 RPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS 202

Query: 233 -------------------------------LKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
                                          + N    +C+  F E    GL   E  V+
Sbjct: 203 EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEK--CGLAQHEHVVT 260

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
            ++    + G ++ A  LF  ++  D V +  +I GY+ NG    ++ LF E++   +RP
Sbjct: 261 GLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRP 320

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
              ++ +++   +          +H   V  G+D +  VS+AL  +YC+    D A   F
Sbjct: 321 SSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAF 380

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + MP + + SWN+MI+GYAQNG    A+AL+ ++   N++P+  T  S LSAC       
Sbjct: 381 DAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALS 440

Query: 442 RGQ 444
            G+
Sbjct: 441 LGK 443



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 15/124 (12%)

Query: 321 PDKFSI----SSVVSSCAK------LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           PD FS     +S+ SSC++       A+    + +H  AV  G   D  V+SAL  +Y  
Sbjct: 111 PDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFT 170

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVS 429
               +DA  VF+ +P+ + V WN+++ G + +    EAL  + ++    +++PDS T  S
Sbjct: 171 LSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLAS 226

Query: 430 VLSA 433
           VL A
Sbjct: 227 VLPA 230



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 104/286 (36%), Gaps = 71/286 (24%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++  + L K +   +     E N  ++   L+  Y K G +  AR +FD M  ++++S
Sbjct: 433 CAQLGALSLGKWVHKIIANEKLELNV-YVMTALIDMYVKCGSIAEARCIFDSMDNKNVVS 491

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN ++S                               G+   G   EAL+++  M     
Sbjct: 492 WNVMIS-------------------------------GYGLHGQGAEALKLYKDMMDAHL 520

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            PT  T +S L AC+           HG +V    G  VF   ++T  Y     I+    
Sbjct: 521 HPTSSTFLSVLYACS-----------HGGLV--KEGTTVF--RSMTSDYGITPGIEHCTC 565

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           + D +                + GQ K+  +L  E     + P       +LGAC     
Sbjct: 566 MVDLLG---------------RAGQLKEAFELISEFPKSAVGPG--IWGALLGACMVHKD 608

Query: 273 IDDAG----RLFHVIKEKDNVCWTTMIVG-YTQNGKEEDALILFNE 313
            D A     +LF +  E +N  +  ++   YT   +  +A ++  E
Sbjct: 609 GDLAKLASQKLFEL--EPENTGYYVLLSNLYTSKKQYSEAAVVRQE 652


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 350/578 (60%), Gaps = 40/578 (6%)

Query: 158 THVSALNACAQLLDLRR----GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           THVS L    Q     R    G   H +I+   L  +    N L +MY+K G ++ AR L
Sbjct: 45  THVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKL 104

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M  R+LVSWN M+  + +NG  +K + LF +MQ  G +  E TVS+++ AC      
Sbjct: 105 FDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCV 164

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA  +F  + E+ +V W++M+ GY
Sbjct: 165 FECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGY 224

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E+AL+LF+   +  +  ++F+ISS +S+CA  A+L  G+ V   +   G+  ++
Sbjct: 225 VQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNI 284

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+LIDMY KCG+ ++A+TVF+ +  +NVV WN++++G++++ + LEA+  ++K+ Q 
Sbjct: 285 FVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM 344

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  T++SVLSAC H  L E+G+ +FD +  VH ++P++ HY+CM+++LGR+  + +
Sbjct: 345 GICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHE 404

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A D I  +P    + +W +LL+ C +  +++  E+AA+HLFE+EP NAG +++LSN+YAA
Sbjct: 405 AKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAA 464

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RWE+VA  R+ +K    KK    SWIEI +KVH F+  +R HP    IY +L  L+ +
Sbjct: 465 NDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGE 524

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+   T+  LHD +E  K + + +HSEKLAL + ++  PHG  PIRIMKN+R+CGD
Sbjct: 525 MKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHG-APIRIMKNLRICGD 583

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH FMK AS I  R II+RD+NRFHHF  G CSC + W
Sbjct: 584 CHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 174/345 (50%), Gaps = 37/345 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D I+ N L++ +++ G V+  R LFD+MP+R  VS+NT +      G   +AL +F +MQ
Sbjct: 81  DTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQ 140

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K+    +++T  S + ACA    +   KQ+HG  +   L  NVFV  AL D+YAK G + 
Sbjct: 141 KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
            A  +F+ M  R+ V+W+ M++GY++N   ++ + LF   Q +GL  ++ T         
Sbjct: 201 DANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 260

Query: 260 --------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                     +S+++    + G I++A  +F  ++EK+ V W  
Sbjct: 261 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 320

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VL 352
           ++ G++++ +  +A+I F +M    + P+  +  SV+S+C+ L  +  G+      + V 
Sbjct: 321 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 380

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMI 396
            V  ++L  S ++D+  + G+  +A    + MP     S W S++
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/578 (38%), Positives = 350/578 (60%), Gaps = 40/578 (6%)

Query: 158 THVSALNACAQLLDLRR----GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           THVS L    Q     R    G   H +I+   L  +    N L +MY+K G ++ AR L
Sbjct: 18  THVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKL 77

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M  R+LVSWN M+  + +NG  +K + LF +MQ  G +  E TVS+++ AC      
Sbjct: 78  FDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCV 137

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA  +F  + E+ +V W++M+ GY
Sbjct: 138 FECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGY 197

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E+AL+LF+   +  +  ++F+ISS +S+CA  A+L  G+ V   +   G+  ++
Sbjct: 198 VQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNI 257

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+LIDMY KCG+ ++A+TVF+ +  +NVV WN++++G++++ + LEA+  ++K+ Q 
Sbjct: 258 FVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM 317

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  T++SVLSAC H  L E+G+ +FD +  VH ++P++ HY+CM+++LGR+  + +
Sbjct: 318 GICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHE 377

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A D I  +P    + +W +LL+ C +  +++  E+AA+HLFE+EP NAG +++LSN+YAA
Sbjct: 378 AKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAA 437

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RWE+VA  R+ +K    KK    SWIEI +KVH F+  +R HP    IY +L  L+ +
Sbjct: 438 NDRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGE 497

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+   T+  LHD +E  K + + +HSEKLAL + ++  PHG  PIRIMKN+R+CGD
Sbjct: 498 MKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHG-APIRIMKNLRICGD 556

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH FMK AS I  R II+RD+NRFHHF  G CSC + W
Sbjct: 557 CHSFMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 174/345 (50%), Gaps = 37/345 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D I+ N L++ +++ G V+  R LFD+MP+R  VS+NT +      G   +AL +F +MQ
Sbjct: 54  DTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQ 113

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K+    +++T  S + ACA    +   KQ+HG  +   L  NVFV  AL D+YAK G + 
Sbjct: 114 KEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 173

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
            A  +F+ M  R+ V+W+ M++GY++N   ++ + LF   Q +GL  ++ T         
Sbjct: 174 DANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 233

Query: 260 --------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                     +S+++    + G I++A  +F  ++EK+ V W  
Sbjct: 234 ARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNA 293

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VL 352
           ++ G++++ +  +A+I F +M    + P+  +  SV+S+C+ L  +  G+      + V 
Sbjct: 294 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 353

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMI 396
            V  ++L  S ++D+  + G+  +A    + MP     S W S++
Sbjct: 354 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 398


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/623 (36%), Positives = 358/623 (57%), Gaps = 38/623 (6%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQL 169
           ++F    + D +++N+ +  F N    R ALQ ++ M ++ R  P  +T  S L  CA L
Sbjct: 33  SVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALL 92

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           L+ + GK +HG++V   L  ++++   L +MYA  G++  AR+LF+RM +RN V W  MI
Sbjct: 93  LEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMI 152

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ-------------------- 269
           SGY+KN  P + + L+++M+  G +PDEVT++ ++ AC +                    
Sbjct: 153 SGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMK 212

Query: 270 ---------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                           G +  A ++F  + +KD   W+ +I GY +N +  +AL LF E+
Sbjct: 213 ICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREV 272

Query: 315 LS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
               ++RP++ +I +V+S+CA+L  L  G+ VH           + ++++LIDM+ KCG 
Sbjct: 273 AGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGD 332

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D A  +F+ M  ++++SWNSM+NG A +G   EALA +  +   +L+PD  TF+ VL+A
Sbjct: 333 IDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTA 392

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L + G+  F  I A++G+    +HY CM++LL R+  + +A + I+ +P +P+  
Sbjct: 393 CSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGA 452

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IW ++L  C +  +++ GE AAR L ELEP N G YI+LSN+YA    W +V  +R  M 
Sbjct: 453 IWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVKKVRELMN 512

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            K ++K    S + IDN  H F++ D +HPE   I   L ++ +KL+  G+  +T  VL 
Sbjct: 513 EKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVADTSEVLL 572

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           +  + +K +S+  HSEKLAL Y L+K   G   I I+KN+RVC DCH  +K  S I  R 
Sbjct: 573 NIDDNKKEESVSQHSEKLALCYGLLKSEIG-GRIVILKNLRVCSDCHTLIKLVSKIYQRQ 631

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I LRD NRFHHF  G+CSC+D W
Sbjct: 632 ITLRDRNRFHHFKDGSCSCRDYW 654


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/640 (37%), Positives = 352/640 (55%), Gaps = 41/640 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           N LL  +A+ GS+     LF+  P    + V++ T I   +      +AL  F+RM+   
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P  +T  + L ACA    L  G+QIH  I       + FV  AL DMYAK G +  A 
Sbjct: 196 IYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAE 255

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            +FD M +RNLVSWN MI G++KN    + I +F+E  +L L PD+V++S++L AC    
Sbjct: 256 NVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFRE--VLSLGPDQVSISSVLSACAGLV 313

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G  +DA +LF    ++D V W  MI+
Sbjct: 314 ELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIM 373

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G  +    E A   F  M+ E V PD+ S SS+  + A +A+L  G ++H   +  G   
Sbjct: 374 GCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVK 433

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +  +SS+L+ MY KCG   DA+ VF      NVV W +MI  + Q+G   EA+ L++++L
Sbjct: 434 NSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEML 493

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
            E + P+  TFVSVLSAC H    + G  +F+S++ VH I P L+HYACM++LLGR   +
Sbjct: 494 NEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRL 553

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A   I+S+P +P+SL+W  LL  C    +++ G   A  LF+LEP N G Y++LSN+Y
Sbjct: 554 EEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIY 613

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
              G  E+   +R  M    V+K +  SWI++ N+   F + DR+H  T+ IY  L KL 
Sbjct: 614 IRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLK 673

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           + ++  G+   T+   +  +  E+ +S+  HSEKLALA+ L+  P G +P+RI KN+R C
Sbjct: 674 ELIKRRGYVAETQFATNSVEGSEE-QSLWCHSEKLALAFGLLVLPPG-SPVRIKKNLRTC 731

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH  MKFAS+I  R II+RD NRFH F  G+CSC D W
Sbjct: 732 GDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDYW 771



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 179/375 (47%), Gaps = 41/375 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D     ALL  +A+ GS+     +FD+MP R+ VS+N+ I GF        A+ VF  
Sbjct: 232 LNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFRE 291

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +      P   +  S L+ACA L++L  GKQ+HG IV   L G V+V+N+L DMY K G 
Sbjct: 292 VLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGL 349

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            + A  LF    +R++V+WN+MI G  +    ++    FQ M   G+ PDE + S++  A
Sbjct: 350 FEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHA 409

Query: 267 ----------------CFQTGRID-------------------DAGRLFHVIKEKDNVCW 291
                             +TG +                    DA ++F   KE + VCW
Sbjct: 410 SASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCW 469

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAV 350
           T MI  + Q+G   +A+ LF EML+E V P+  +  SV+S+C+    +  G +  +  A 
Sbjct: 470 TAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMAN 529

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEAL 409
           V  +   L   + ++D+  + G  ++A      MP   + + W +++    ++       
Sbjct: 530 VHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGR 589

Query: 410 ALYDKLLQENLKPDS 424
            + ++L +  L+PD+
Sbjct: 590 EVAERLFK--LEPDN 602



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 231/525 (44%), Gaps = 82/525 (15%)

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKG-FSREA---LQVFSRMQKDRFEPTDYTHVS-- 161
            L  L +K+ ++   + +   + F   G  SRE    LQ+F+  Q    +   ++ V   
Sbjct: 41  SLLGLEEKLQVQKENARSKPNSNFEGLGPMSREVAFWLQLFTSYQSGVPKFHQFSSVPDL 100

Query: 162 --ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM-- 217
              LN  A+L  L+   QIH ++V  N   ++   N L  +YAK G I     LF+    
Sbjct: 101 KHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPH 160

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD-- 275
            + N+V+W  +I+   ++ +P + +  F  M+  G+ P+  T S IL AC     + +  
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQ 220

Query: 276 ---------------------------------AGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                            A  +F  +  ++ V W +MIVG+ +N 
Sbjct: 221 QIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNK 280

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
               A+ +F E+LS  + PD+ SISSV+S+CA L  L  G+ VHG  V  G+   + V +
Sbjct: 281 LYGRAIGVFREVLS--LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKN 338

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           +L+DMYCKCG+ +DA  +F     R+VV+WN MI G  +     +A   +  +++E ++P
Sbjct: 339 SLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEP 398

Query: 423 DSFTFVSVLSAC-----------LHADLFERGQNHFDSISA----VHGITPS-LDHY--- 463
           D  ++ S+  A            +H+ + + G      IS+    ++G   S LD Y   
Sbjct: 399 DEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVF 458

Query: 464 -----------ACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIK 509
                        MI +  +    ++A+ L + + ++   P  + + ++LS C+  G I 
Sbjct: 459 RETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKID 518

Query: 510 HGEMAARHLFELEPINAG--PYIMLSNMYAACGRWEDVASIRSSM 552
            G      +  +  I  G   Y  + ++    GR E+      SM
Sbjct: 519 DGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESM 563


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/687 (36%), Positives = 376/687 (54%), Gaps = 52/687 (7%)

Query: 57  NTTFLHNRLLHFYA--KSGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRAL 112
           NT F  ++L+ F A   S  L YA  LF  +  +  +I  WN L+ AH+ + +      L
Sbjct: 55  NTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHL 114

Query: 113 FDKM----PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
           F +M       +S ++ +     A    + EA Q+ +   K       + H S ++  +Q
Sbjct: 115 FSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQ 174

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           + +LR  + +  K  +     +     AL   Y   G +D AR LFD +  +++VSWN M
Sbjct: 175 VGELRHARLVFDKSTL----RDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAM 230

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------- 267
           I+GY+++G+ ++ +  F  MQ   ++P++ T+ ++L AC                     
Sbjct: 231 IAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGF 290

Query: 268 --------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G I  A +LF  +++KD + W TMI GY      E+AL+LF  
Sbjct: 291 GKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEV 350

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG----KAVVLGVDDDLLVSSALIDMYC 369
           ML E+V P+  +  +V+ +CA L +L  G+ VH          G  +++ + +++I MY 
Sbjct: 351 MLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYA 410

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KCG  + A  VF  M +R++ SWN+MI+G A NG    AL L+++++ E  +PD  TFV 
Sbjct: 411 KCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVG 470

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VLSAC  A   E G  +F S++  +GI+P L HY CMI+LL RS   D+A  L+ ++  +
Sbjct: 471 VLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEME 530

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P+  IW +LL+ C + G ++ GE  A  LFELEP N+G Y++LSN+YA  GRW+DVA IR
Sbjct: 531 PDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIR 590

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
           + +  K +KK    + IEID  VH+F+  D+ HP++E I+  L ++ + L+E GF P+T 
Sbjct: 591 TKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTS 650

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
            VL+D  EE K  ++  HSEKLA+A+ LI    G T IRI+KN+RVC +CH   K  S I
Sbjct: 651 EVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGST-IRIVKNLRVCRNCHSATKLISKI 709

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R II RD NRFHHF  G CSC D W
Sbjct: 710 FNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/428 (30%), Positives = 196/428 (45%), Gaps = 42/428 (9%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G       +  L   C +      AK+L +H  L         +H  L+H Y++ G+L +
Sbjct: 122 GLYPNSHTFPSLFKSCAKSKATHEAKQLHAHA-LKLALHLHPHVHTSLIHMYSQVGELRH 180

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FDK  LRD +S+ AL++ +   G V D R LFD++P +D VS+N  IAG+   G  
Sbjct: 181 ARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRF 240

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL  F+RMQ+    P   T VS L+AC  L  L  GK I   +     G N+ + NAL
Sbjct: 241 EEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNAL 300

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY+K GEI  AR LFD M +++++ WN MI GY      ++ + LF+ M    + P++
Sbjct: 301 VDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPND 360

Query: 258 VTVSNILGACFQTGRID---------------------------------------DAGR 278
           VT   +L AC   G +D                                        A +
Sbjct: 361 VTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQ 420

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +  +    W  MI G   NG  E AL LF EM++E  +PD  +   V+S+C +   
Sbjct: 421 VFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGF 480

Query: 339 LYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMI 396
           +  G +         G+   L     +ID+  + G  D+A  +  NM    +   W S++
Sbjct: 481 VELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLL 540

Query: 397 NGYAQNGQ 404
           N    +GQ
Sbjct: 541 NACRIHGQ 548



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 127/314 (40%), Gaps = 72/314 (22%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD---AWTVFNMM 384
           ++++ C  + SL   + +H   +  G+ + L   S LI+ +C    + D   A ++F+ +
Sbjct: 30  NLLAKCPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSI 85

Query: 385 PTR--NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD-LFE 441
             +  N+  WN++I  ++       +L L+ ++L   L P+S TF S+  +C  +    E
Sbjct: 86  HHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHE 145

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
             Q H       H +  +L  +                       PH     + ++L+ +
Sbjct: 146 AKQLH------AHALKLALHLH-----------------------PH-----VHTSLIHM 171

Query: 502 CAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            +  G+++H    AR +F+   + +A  +  L   Y + G  +D   +   + +K+V   
Sbjct: 172 YSQVGELRH----ARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDV--- 224

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SW   +  +  +V   R        +EE      ++QEA  SPN   ++        
Sbjct: 225 --VSW---NAMIAGYVQSGR--------FEEALACFTRMQEADVSPNQSTMV-------S 264

Query: 621 VKSICYHSEKLALA 634
           V S C H   L L 
Sbjct: 265 VLSACGHLRSLELG 278


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/638 (37%), Positives = 351/638 (55%), Gaps = 72/638 (11%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   I  F  +   +EA+    R+     +P+   + + + AC +   L  GK++H    
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIP----QPSPRLYSTLIAACLRHRKLELGKRVHAHTK 90

Query: 184 VGNLGGNVFVRNALTDMYAKGG-------------------------------EIDKARW 212
             N    + + N L  MYAK G                                I++AR 
Sbjct: 91  ASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARK 150

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ----------------------- 249
           LFD M +R+  SWN +ISGY+  G   + +DLF+ MQ                       
Sbjct: 151 LFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210

Query: 250 -------------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                          GL  DEV  + +L    + G +++A  +F  + +KD V WTTMI 
Sbjct: 211 SLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIH 270

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              ++G++++   LF +++   VRP++++ + V+++CA LA+   G+ VHG    +G D 
Sbjct: 271 RCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDP 330

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
               +SAL+ +Y KCG T+ A  VFN MP  ++VSW S+I GYAQNGQ   AL  ++ LL
Sbjct: 331 FSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLL 390

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +   KPD  TFV VLSAC HA L + G  +F S+   HG+  + DHYAC+I+LL RS   
Sbjct: 391 RSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRF 450

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A ++I ++P KP+  +W++LL  C + G+I+  E AA+ LFELEP N   YI LSN+Y
Sbjct: 451 KEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIY 510

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G W +   +R+ M ++ + K    SWIEI  +VH F+  D +HP+   I+E L +L 
Sbjct: 511 ANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELS 570

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK++E G+  +T  VLHD +EE+K ++I YHSEKLA+A+ +I    G TPI++ KN+R C
Sbjct: 571 KKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPG-TPIKVFKNLRTC 629

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            DCH  MK+ S I+ R II+RDSNRFH FV G+CSCKD
Sbjct: 630 VDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKD 667



 Score =  220 bits (561), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 142/475 (29%), Positives = 248/475 (52%), Gaps = 41/475 (8%)

Query: 4   KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           +++L++A+D L+ R    +   Y+ L+  C R   +EL KR+ +H   + + P    + N
Sbjct: 45  QNRLKEAVDYLH-RIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIV-ISN 102

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           RL+H YAK G L  A+ LFD++P +D+ SWN ++S +A  G ++  R LFD+MP RD+ S
Sbjct: 103 RLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFS 162

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKI 182
           +N  I+G+ ++G+  EAL +F  MQ++     + +T  SAL A A +  LRRGK+IHG +
Sbjct: 163 WNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYL 222

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +   L  +  V  AL D+Y K G +++AR +FD+M ++++VSW  MI    ++G+ K+  
Sbjct: 223 IRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGF 282

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACF---------------------------------- 268
            LF+++   G+ P+E T + +L AC                                   
Sbjct: 283 SLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVY 342

Query: 269 -QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G  + A R+F+ +   D V WT++IVGY QNG+ + AL  F  +L    +PD+ +  
Sbjct: 343 SKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFV 402

Query: 328 SVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            V+S+C     +  G +  H      G+       + +ID+  + G   +A  + + MP 
Sbjct: 403 GVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPM 462

Query: 387 R-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           + +   W S++ G   +G ++E      K L E    +  T++++ +   +A L+
Sbjct: 463 KPDKFLWASLLGGCRIHG-NIELAERAAKALFELEPENPATYITLSNIYANAGLW 516


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 337/573 (58%), Gaps = 38/573 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           S L  C     +R G+++H  ++       V++R  L  +Y K   +  AR + D M  R
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--- 272
           N+VSW  MISGY + G   + + LF EM + G  P+E T + +L +C     FQ GR   
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 134

Query: 273 ---------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                      I +A R+F  + E+D V  T +I GY Q G +E
Sbjct: 135 SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 194

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL LF  +  E +R +  + +SV+++ + LA+L HG+ VH   +   +   +++ ++LI
Sbjct: 195 EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLI 254

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDS 424
           DMY KCG    +  +F+ MP R V+SWN+M+ GY+++G   EA+ L+  + +EN +KPDS
Sbjct: 255 DMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDS 314

Query: 425 FTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
            TF++VLS C H  + +RG +  ++ ++   G  P ++HY C+++L GR+  V++A + I
Sbjct: 315 VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 374

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           K +P +P + IW +LL  C +  ++  GE  AR L E+E  NAG Y++LSN+YA+ GRW+
Sbjct: 375 KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWD 434

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV ++R  MK K V K    SWIE+D  +H F + DR+HP  E ++ ++ +L  K++EAG
Sbjct: 435 DVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAG 494

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P    VL+D  +E+K K +  HSEKLALA+ LI  P G TP+RI+KN+R+C DCH F 
Sbjct: 495 YVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGG-TPVRIIKNLRICVDCHNFA 553

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KF S + GR + LRD NRFHH VGG CSC D W
Sbjct: 554 KFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 187/414 (45%), Gaps = 71/414 (17%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           + Y  ++ +C     +   +R+ +HM    YEP   +L  RL+  Y K   L        
Sbjct: 11  QGYDSVLTECISQTAIREGQRVHAHMIKTCYEP-PVYLRTRLIVLYNKCRCL-------- 61

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
                                   D R + D+MP R+ VS+   I+G++ +G++ EAL +
Sbjct: 62  -----------------------GDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHL 98

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M      P ++T  + L +C      + G+QIH  ++  +   ++FV ++L DMYAK
Sbjct: 99  FVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAK 158

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G+I +AR +FD +  R++VS   +ISGY + G  ++ +DLF+ +Q  G+  + VT +++
Sbjct: 159 AGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASV 218

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L A                                     + G +  + R+F  + E+  
Sbjct: 219 LTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTV 278

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           + W  M+VGY+++G   +A+ LF  M  E+ V+PD  +  +V+S C+       G  +  
Sbjct: 279 ISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFY 338

Query: 348 KAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           + V    G + ++     ++D++ + G  ++A+     MP     + W S++  
Sbjct: 339 EMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGA 392



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 189/396 (47%), Gaps = 46/396 (11%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           A   L   ++ L S G A  E  +  ++  CT  +  +L +++ S +    +E +  F+ 
Sbjct: 92  ASEALHLFVEMLMS-GTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHI-FVG 149

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + LL  YAK+GK+  AR +FD +P RD++S  A++S                        
Sbjct: 150 SSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIIS------------------------ 185

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                  G+A  G   EAL +F R+Q++       T+ S L A + L  L  G+Q+H  +
Sbjct: 186 -------GYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +   L   V ++N+L DMY+K G +  +R +FD M  R ++SWN M+ GY K+G  ++ +
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAV 298

Query: 243 DLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFH-VIKEKDNV-----CWTTMI 295
           +LF+ M+    + PD VT   +L  C   G  D    +F+ ++ +KD        +  ++
Sbjct: 299 ELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVV 358

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             + + G+ E+A     +M  E   P      S++ +C    +++ G+ V  +  +L ++
Sbjct: 359 DLFGRAGRVEEAFEFIKKMPFE---PTAAIWGSLLGACRVHQNVHIGEFVARR--LLEIE 413

Query: 356 DDLLVSSALI-DMYCKCGVTDDAWTVFNMMPTRNVV 390
            +   +  ++ ++Y   G  DD  TV  +M  + V+
Sbjct: 414 SENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVI 449


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/646 (35%), Positives = 367/646 (56%), Gaps = 40/646 (6%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           + +  +L+ A+ R G + +   +FD+M  RD  ++N  ++G      + EA+ +F RM  
Sbjct: 103 VFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVG 162

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +       T  S L  C  L D      +H   V   L   +FV NAL D+Y K G +++
Sbjct: 163 EGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEE 222

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           A+ +F  M  R+LV+WN +ISG  + GQ    + +FQ M+  G++PD +T+ ++  A  Q
Sbjct: 223 AQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQ 282

Query: 270 TG------------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
            G                                     I+ A R+F  +  +D+V W T
Sbjct: 283 GGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNT 342

Query: 294 MIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +I GY QNG   +A+  +  M   E ++  + +  SV+ + + L +L  G  +H  ++ +
Sbjct: 343 LITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKI 402

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G++ D+ V + LID+Y KCG   +A  +F  MP R+   WN++I+G   +G   EAL L+
Sbjct: 403 GLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLF 462

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++ QE +KPD  TFVS+L+AC HA L ++G++ FD +   + I P   HYACM ++LGR
Sbjct: 463 SRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGR 522

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +D+A + I+++P KP+S +W  LL  C + G+++ G++A+++LFEL+P N G Y+++
Sbjct: 523 AGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLM 582

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT--HPETEIIYE 590
           SNMYA  G+W+ V  +RS ++ +N++K   +S IE+   V+ F S ++T  HP+ E I  
Sbjct: 583 SNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQA 642

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL  L+ K++  G+  +   VL D +++EK   +  HSE+LA+A+ +I  P   TP+ I 
Sbjct: 643 ELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTP-SRTPLHIY 701

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVCGDCH   K+ S I  R II+RDSNRFHHF  G+CSC D W
Sbjct: 702 KNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 121/456 (26%), Positives = 207/456 (45%), Gaps = 49/456 (10%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHG-K 181
           NT IA F+     R A  +   +      F P  +T  S + A           Q+H   
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNAS---AAQLHACA 93

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           + +G +  +VF   +L   Y + G I +A  +FD M+ R++ +WN M+SG  +N +  + 
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           + LF  M   G+  D VTVS++L  C                                  
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDV 213

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G +++A  +FH ++ +D V W ++I G  Q G+   AL +F  M    V PD  ++
Sbjct: 214 YGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTL 273

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S+ S+ A+       + +H   +  G D DD++  +A++DMY K    + A  +F+ MP
Sbjct: 274 VSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMP 333

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQ 444
            ++ VSWN++I GY QNG   EA+  Y  + + E LK    TFVSVL A  H    ++G 
Sbjct: 334 VQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGM 393

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
               ++S   G+   +    C+I+L  +   + +A+ L + +P +     W+ ++S   +
Sbjct: 394 R-MHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTG-PWNAIISGLGV 451

Query: 505 KGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
            G   HG  A      ++     P ++   ++ AAC
Sbjct: 452 HG---HGAEALTLFSRMQQEGIKPDHVTFVSLLAAC 484



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 174/342 (50%), Gaps = 30/342 (8%)

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           AKS   +  R  +D   + DII+ NA++  +A+  +++  + +FD MP++DSVS+NT I 
Sbjct: 289 AKSLHCYVMRRGWD---VDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLIT 345

Query: 130 GFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           G+   G + EA++ +  MQK +  +    T VS L A + L  L++G ++H   +   L 
Sbjct: 346 GYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLN 405

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +V+V   L D+YAK G++ +A  LF++M  R+   WN +ISG   +G   + + LF  M
Sbjct: 406 VDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRM 465

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK--------EKDNVCWTTMIVGYTQ 300
           Q  G+ PD VT  ++L AC   G +D     F V++         K   C   M+    +
Sbjct: 466 QQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADML---GR 522

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV---VLGVDDD 357
            G+ ++A   FN + +  ++PD     +++ +C       HG V  GK     +  +D +
Sbjct: 523 AGQLDEA---FNFIQNMPIKPDSAVWGALLGACR-----IHGNVEMGKVASQNLFELDPE 574

Query: 358 LLVSSALI-DMYCKCGVTDDAWTVFNMMPTRNV---VSWNSM 395
            +    L+ +MY K G  D    V +++  +N+     W+S+
Sbjct: 575 NVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 616



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 200/453 (44%), Gaps = 97/453 (21%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +++   NAL+  + + G +++ + +F  M  RD V++N+ I+G   +G +  AL++F  M
Sbjct: 202 KELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGM 261

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGE 206
           +     P   T VS  +A AQ  D R  K +H  ++  G    ++   NA+ DMYAK   
Sbjct: 262 RGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSN 321

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ----------------- 249
           I+ A+ +FD M  ++ VSWN +I+GY++NG   + ++ +  MQ                 
Sbjct: 322 IEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLP 381

Query: 250 -------------------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                               +GLN D    + ++    + G++ +A  LF  +  +    
Sbjct: 382 AYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP 441

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I G   +G   +AL LF+ M  E ++PD  +  S++++C+     + G V  G++ 
Sbjct: 442 WNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS-----HAGLVDQGRSF 496

Query: 351 --VLGVDDDLLV----SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
             V+ V  D++      + + DM  + G  D+A+     MP                   
Sbjct: 497 FDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMP------------------- 537

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERG----QNHFDSISAVHGITP- 458
                          +KPDS  + ++L AC +H ++ E G    QN F+       + P 
Sbjct: 538 ---------------IKPDSAVWGALLGACRIHGNV-EMGKVASQNLFE-------LDPE 574

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           ++ +Y  M N+  +    D  VD ++SL  + N
Sbjct: 575 NVGYYVLMSNMYAKVGKWD-GVDEVRSLVRRQN 606


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 351/612 (57%), Gaps = 40/612 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA-NKGFSREALQVFSR 146
           RD+   NAL+  +     V+  R +FDKM  RD VS++T I   + NK F   AL++   
Sbjct: 157 RDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM-ALELIRE 215

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKG 204
           M   +  P++   VS +N  A   ++R GK +H  ++    N    V    AL DMYAK 
Sbjct: 216 MNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKC 275

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  AR LF+ +  + +VSW  MI+G                                 
Sbjct: 276 GHLGLARQLFNGLTQKTVVSWTAMIAG--------------------------------- 302

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             C ++ R+++A  LF   + +D + WT M+  Y Q    + A  LF++M +  VRP K 
Sbjct: 303 --CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKV 360

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +I S++S CA   +L  G+ VH       V+ D ++++AL+DMY KCG  + A  +F   
Sbjct: 361 TIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEA 420

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
            +R++  WN++I G+A +G   EAL ++ ++ ++ +KP+  TF+ +L AC HA L   G+
Sbjct: 421 ISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK 480

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             F+ +    G+ P ++HY CM++LLGR+  +D+A ++IKS+P KPN+++W  L++ C +
Sbjct: 481 KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRL 540

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             + + GE+AA  L E+EP N G  +++SN+YAA  RW D A +R +MK+  +KK   +S
Sbjct: 541 HKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHS 600

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
            IE++  VH+F+  D++HP+   I E L+++ +KL EAG+ P+T  VL +  EEEK  ++
Sbjct: 601 VIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETAL 660

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            YHSEKLA+A+ LI      TPIRI+KN+RVC DCH   K  S I GR II+RD NRFHH
Sbjct: 661 TYHSEKLAMAFGLISTAPS-TPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHH 719

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 720 FREGYCSCGDYW 731



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 121/225 (53%), Gaps = 4/225 (1%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P TT     LL  YAK G L  AR LF+ +  + ++SW A+++   RS  +++ RALFD 
Sbjct: 263 PTTT----ALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDS 318

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
              RD + +   ++ +A      +A  +F +M+     PT  T VS L+ CA    L  G
Sbjct: 319 TQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG 378

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K +H  I    +  +  +  AL DMYAK G+I+ A  LF    +R++  WN +I+G+  +
Sbjct: 379 KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 438

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           G  ++ +D+F EM+  G+ P+++T   +L AC   G + +  +LF
Sbjct: 439 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 483



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 108/241 (44%), Gaps = 26/241 (10%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I  YT+  +  +AL ++ ++   D   D F   SV+ +C +++    G+ +HG  +
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G+D D+ V +AL+ MY +C   + A  VF+ M  R+VVSW++MI   ++N +   AL 
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 411 LYDKLLQENLKPDSFTFVSV-----------LSACLHADLFERGQNHFDSISAVHGITPS 459
           L  ++    ++P     VS+           +   +HA +     N    +      T  
Sbjct: 212 LIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT---TAL 268

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           LD YA       +   +  A  L   L  K   + W+ +++ C     ++     AR LF
Sbjct: 269 LDMYA-------KCGHLGLARQLFNGLTQK-TVVSWTAMIAGCIRSNRLEE----ARALF 316

Query: 520 E 520
           +
Sbjct: 317 D 317


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 343/594 (57%), Gaps = 38/594 (6%)

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           SGS+   R +F+++P   + + N+ I G+ NK   R+A+  +  M     +P  +T  S 
Sbjct: 25  SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSL 84

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
             +C  L +   GKQ+H          + +++N L +MY+  G +  AR +FD+M N+++
Sbjct: 85  FKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 141

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
           VSW  MI  Y +   P + I LF+ M++                         A  LF  
Sbjct: 142 VSWATMIGAYAQWDLPHEAIKLFRRMEI-------------------------ASNLF-- 174

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
                  CW  MI G+ ++   E+AL LFNEM    V+ DK +++S++ +C  L +L  G
Sbjct: 175 -------CWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG 227

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H       ++ D+ + +AL+DMY KCG  + A  VF  MP ++V++W ++I G A  
Sbjct: 228 KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMC 287

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           GQ L+AL L+ ++    +KPD+ TFV VL+AC HA L   G  +F+S+   +GI PS++H
Sbjct: 288 GQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEH 347

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CM+++LGR+  + +A DLI+++P  P+  +   LLS C + G++   E AA+ L EL+
Sbjct: 348 YGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELD 407

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G Y++LSN+Y++   WE    +R  M  +N+KK    S IE+   VH+FV  D +H
Sbjct: 408 PKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSH 467

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P++  IYE L  ++++L+ AG+ P+   VL D  E+EK   +  HSEKLA+A+ L+    
Sbjct: 468 PQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTP 527

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G TPIR++KN+RVC DCH  MKF S++  R II+RD NRFHHF  G+CSC+D W
Sbjct: 528 G-TPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 142/299 (47%), Gaps = 19/299 (6%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            ++ N L++ Y+  G L  AR +FDKM  + ++SW  ++ A+A+     +   LF +M I
Sbjct: 110 AYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEI 169

Query: 119 RDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
             ++  +N  I G        EAL +F+ MQ    +    T  S L AC  L  L  GK 
Sbjct: 170 ASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKW 229

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  I    +  +V +  AL DMYAK G I+ A  +F  M  +++++W  +I G    GQ
Sbjct: 230 LHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQ 289

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WT 292
             K ++LF EMQ+  + PD +T   +L AC   G +++    F+ +  K  +      + 
Sbjct: 290 GLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYG 349

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            M+    + G+  +A  L   M    + PD F +  ++S+C           +HG  VV
Sbjct: 350 CMVDMLGRAGRIAEAEDLIQNM---PMAPDYFVLVGLLSACR----------IHGNLVV 395



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 135/319 (42%), Gaps = 43/319 (13%)

Query: 256 DEVTVSNILGAC--FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
           D  + S I+  C    +G +  A  +F+ I         ++I GYT       A++ +  
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M+ + + PD+F+  S+  SC  L     G+ +H  +  LG   D  + + L++MY  CG 
Sbjct: 69  MMLQGLDPDRFTFPSLFKSCGVLC---EGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGC 125

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQ---------------------------NG--Q 404
              A  VF+ M  ++VVSW +MI  YAQ                           NG  +
Sbjct: 126 LVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVE 185

Query: 405 DL---EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           D    EAL+L++++    +K D  T  S+L AC H    E G+     I     I   + 
Sbjct: 186 DSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEK-EKIEVDVA 244

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
               ++++  +   ++ A+ + + +P K + + W+ L+   AM G    G  A     E+
Sbjct: 245 LGTALVDMYAKCGSIESAMRVFQEMPEK-DVMTWTALIVGLAMCG---QGLKALELFHEM 300

Query: 522 EPINAGP-YIMLSNMYAAC 539
           +     P  I    + AAC
Sbjct: 301 QMSEVKPDAITFVGVLAAC 319


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/613 (38%), Positives = 353/613 (57%), Gaps = 41/613 (6%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY---THVSALNACAQLLDLRRGKQI 178
           V  N  +  F+ +GFS ++ ++          P+++    + +AL  C Q  +  RGK +
Sbjct: 2   VCRNNFLIQFSRRGFSVQSAKLTQEF-VGHVSPSEFNSHAYANALQDCIQKDEPSRGKGL 60

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H +I+      ++F  N L +MY K   +  A  LFD M  RN +S+  +I GY ++ + 
Sbjct: 61  HCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRF 120

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------------ 268
            + I+LF  +    L P++ T +++L AC                               
Sbjct: 121 LEAIELFVRLHREVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNAL 179

Query: 269 -----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                + GR++++  LF     +++V W T+IVG+ Q G  E AL LF  ML   V+  +
Sbjct: 180 MDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATE 239

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            + SS + +CA LA+L  G  +H   V    D D++V++ALIDMY KCG   DA  VF++
Sbjct: 240 VTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDL 299

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  ++ VSWN+MI+GY+ +G   EAL ++DK+ +  +KPD  TFV VLSAC +A L ++G
Sbjct: 300 MNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG 359

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           Q +F S+   HGI P ++HY CM+ LLGR   +DKAV LI  +P +P+ ++W  LL  C 
Sbjct: 360 QAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACV 419

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           +  DI+ G ++A+ + E+EP +   +++LSNMYA   RW++VAS+R +MK K VKK    
Sbjct: 420 IHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGL 479

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SWIE    VH F   D +HPE  +I   L  L  K ++AG+ PN  +VL D ++EEK + 
Sbjct: 480 SWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERL 539

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           +  HSE+LAL++ +I+ P G +PIRIMKN+R+C DCH  +K  S ++ R I++RD NRFH
Sbjct: 540 LWVHSERLALSFGIIRTPSG-SPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFH 598

Query: 684 HFVGGNCSCKDNW 696
           HF  G CSC D W
Sbjct: 599 HFQEGLCSCGDYW 611



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 102/347 (29%), Positives = 174/347 (50%), Gaps = 38/347 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +WN LL+ + +S  + D   LFD+MP R+++S+ T I G+A      EA+++F R+ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P  +T  S L ACA +  L  G QIH  ++   L  +VFV NAL D+YAK G ++
Sbjct: 132 REVL-PNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRME 190

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            +  LF    +RN V+WN +I G+++ G  +K + LF  M    +   EVT S+ L AC 
Sbjct: 191 NSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACA 250

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G I DA  +F ++ ++D V W  
Sbjct: 251 SLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNA 310

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-L 352
           MI GY+ +G   +AL +F++M   +V+PDK +   V+S+CA    L  GQ      +   
Sbjct: 311 MISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDH 370

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           G++  +   + ++ +  + G  D A  + + +P + +V+ W +++  
Sbjct: 371 GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 7/142 (4%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
            +  FDK    DI+  NAL+  +A+ GS++D R +FD M  +D VS+N  I+G++  G  
Sbjct: 266 VKTTFDK----DIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLG 321

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN-- 195
           REAL++F +MQ+   +P   T V  L+ACA    L +G Q +   ++ + G    + +  
Sbjct: 322 REALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQG-QAYFTSMIQDHGIEPCIEHYT 380

Query: 196 ALTDMYAKGGEIDKARWLFDRM 217
            +  +  +GG +DKA  L D +
Sbjct: 381 CMVWLLGRGGHLDKAVKLIDEI 402


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 239/640 (37%), Positives = 363/640 (56%), Gaps = 39/640 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++A+   G + D + +F   P ++ VS+   I+G A      EA+ VF  M    F+
Sbjct: 60  NSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFK 119

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L A A L  +R  K +H   V G   GNVFV  AL DMY+K G +  AR L
Sbjct: 120 PNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQL 179

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-----CF 268
           F+ M+ RN+VSWN ++SGY  +G  ++ IDLF  M+  GL  D  T+ +++ A     C 
Sbjct: 180 FESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCL 239

Query: 269 QTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
           Q G                               +DDA R+F  +  KD   WT M+ G+
Sbjct: 240 QVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGF 299

Query: 299 TQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +     + A+  FN+ML  ++++ D   +  ++SSC+   +L  G+ VH  A+     ++
Sbjct: 300 SSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTCFANN 359

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V SA+IDMY  CG  +DA   F  M  ++VV WN+MI G   NG   +A+ L+ ++  
Sbjct: 360 IFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKG 419

Query: 418 ENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
             L PD  TFVSVL AC HA +   G Q  +  +   H I P+L HYAC+I++LGR+  +
Sbjct: 420 SGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDI-PNLQHYACVIDILGRAGQL 478

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           D A   I ++P +P+  ++STLL  C + G+IK G   ++ +FE+EP +AG Y++LSNMY
Sbjct: 479 DAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMY 538

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G WE V   R+S++SK +KK   +S IEI+ +++ F++ ++ HP+   I   L  LI
Sbjct: 539 ALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLI 598

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            K+++AG+ PNT ++L D  ++ K   + +HSEK+A+A+ L++   G T IRI KN+R C
Sbjct: 599 LKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPG-TIIRITKNLRTC 657

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   KF S + GR ++++D+NRFH F  G CSC+D W
Sbjct: 658 NDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 167/330 (50%), Gaps = 39/330 (11%)

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           R  P   +H S L    +L DL+  +QIH +I+   L  N F+ N+L + Y   G +  A
Sbjct: 19  RLCPLAQSHASILR---KLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADA 75

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---- 266
           + +F     +N+VSW ++ISG  KN    + ID+F+EM +    P+ VT+S++L A    
Sbjct: 76  KQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANL 135

Query: 267 ----------CF------------QTGRID---------DAGRLFHVIKEKDNVCWTTMI 295
                     CF            +T  +D          A +LF  + E++ V W  ++
Sbjct: 136 GLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIV 195

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY+ +G  E+A+ LFN M  + +  D ++I S++ +   +  L  G  +HG  +  G +
Sbjct: 196 SGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYE 255

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
           +D  + +AL+D+Y      DDA  VF+ M  ++V +W  M+ G++       A+  ++K+
Sbjct: 256 NDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKM 315

Query: 416 LQ-ENLKPDSFTFVSVLSACLHADLFERGQ 444
           L  +NLK DS   + +LS+C H+   ++G+
Sbjct: 316 LGIQNLKLDSIVLMGILSSCSHSGALQQGR 345



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 166/384 (43%), Gaps = 69/384 (17%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           + +AK +        +E N  F+   L+  Y+K G +  AR LF+ M  R+++SWNA++S
Sbjct: 138 IRIAKSVHCFWVRGGFEGNV-FVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVS 196

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                          G+++ GFS EA+ +F+ M++       YT
Sbjct: 197 -------------------------------GYSDHGFSEEAIDLFNLMRRKGLLVDFYT 225

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            +S + A   +  L+ G  IHG I+      +  ++ AL D+Y     +D A  +F  M 
Sbjct: 226 IMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMF 285

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-----FQTGR 272
            +++ +W LM++G+       + I  F +M  +  L  D + +  IL +C      Q GR
Sbjct: 286 VKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGR 345

Query: 273 ------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                         ++DA R F+ + EKD VCW  MI G   NG
Sbjct: 346 RVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNG 405

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVS 361
              DA+ LF +M    + PD+ +  SV+ +C+    +Y G  +    V    D  +L   
Sbjct: 406 YGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHY 465

Query: 362 SALIDMYCKCGVTDDAWTVFNMMP 385
           + +ID+  + G  D A++  N MP
Sbjct: 466 ACVIDILGRAGQLDAAYSFINNMP 489



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 55/351 (15%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL  +    ++++ A    G + DA ++FH    K+ V WT +I G  +N    +A+ +F
Sbjct: 51  GLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVF 110

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            EM   + +P+  +ISSV+ + A L  +   + VH   V  G + ++ V +AL+DMY K 
Sbjct: 111 REMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKF 170

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  +F  M  RNVVSWN++++GY+ +G   EA+ L++ + ++ L  D +T +S++
Sbjct: 171 GCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLI 230

Query: 432 SACLHADLFERGQNHFDSISAVHGI-------------TPSLDHY--------------- 463
            A L     + G       + +HG              T  +D Y               
Sbjct: 231 PASLSVGCLQVG-------TGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSE 283

Query: 464 -------ACMINLLGRSSDV--DKAVDLIKSLPH----KPNSLIWSTLLSVCAMKGDIKH 510
                  A  + L G SS    D+A+     +      K +S++   +LS C+  G ++ 
Sbjct: 284 MFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQ 343

Query: 511 GE----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           G     +A +  F    I  G  ++  +MYA CG  ED       M  K+V
Sbjct: 344 GRRVHALAIKTCFA-NNIFVGSAVI--DMYANCGNLEDAKRFFYGMGEKDV 391


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/645 (36%), Positives = 362/645 (56%), Gaps = 39/645 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R G V   R+LFD MP RD  S+N  I+G    G + +AL V   M+
Sbjct: 206 DVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 265

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +       T  S L  CAQL D+     IH  ++   L   +FV NAL +MYAK G + 
Sbjct: 266 LEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLG 325

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +F +M  R++VSWN +I+ Y +N  P      F +MQL GL PD +T+ ++     
Sbjct: 326 DAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAA 385

Query: 269 QT------------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
           Q+                                    G ID A ++F++I  KD V W 
Sbjct: 386 QSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWN 445

Query: 293 TMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+I GYTQNG   +A+ ++  M    +++ ++ +  S++++ A + +L  G  +HG  + 
Sbjct: 446 TLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIK 505

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ V + LID+Y KCG   DA  +F  +P  + V WN++I+ +  +G   +AL L
Sbjct: 506 TNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKL 565

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++  E +KPD  TF+S+LSAC H+ L + G+  F  +   +GI PSL HY CM++LLG
Sbjct: 566 FREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-YGIKPSLKHYGCMVDLLG 624

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++ A D IK +P  P++ IW  LL  C + G+I+ G+ A+  LFE++  N G Y++
Sbjct: 625 RAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVL 684

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G+WE V  +RS  + + +KK   +S IE++ +V  F + +++HP+ + IY E
Sbjct: 685 LSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAE 744

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   VL D +E+EK   +  HSE+LA+A+ +I  P   + IRI K
Sbjct: 745 LRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPK-SAIRIFK 803

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   KF S I  R I++RDS RFHHF  G CSC D W
Sbjct: 804 NLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 165/581 (28%), Positives = 280/581 (48%), Gaps = 105/581 (18%)

Query: 17  RGQAATEEA-YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           R  A  EE  +  L   CT+     LAKRL + + ++  +  + F+  RL++ YA  G +
Sbjct: 69  RQPAKNEEIDFNSLFDSCTKT---LLAKRLHALLVVS-GKIQSNFISIRLVNLYASLGDV 124

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
             +R  FD++  +D+ +WN+++SA+ R+G                               
Sbjct: 125 SLSRGTFDQIQRKDVYTWNSMISAYVRNGHF----------------------------- 155

Query: 136 FSREALQVFSR-MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
             REA+  F + +   +F+   YT    L AC  L+D   G++IH  +       +VFV 
Sbjct: 156 --REAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDVFVA 210

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            +L  MY++ G +  AR LFD M  R++ SWN MISG ++NG   + +D+  EM+L G+N
Sbjct: 211 ASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIN 270

Query: 255 PDEVTVSNILGACFQTGRID-----------------------------------DAGRL 279
            D VTV++IL  C Q G I                                    DA ++
Sbjct: 271 MDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKV 330

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +  +D V W ++I  Y QN     A   F +M    + PD  ++ S+ S  A+    
Sbjct: 331 FQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDY 390

Query: 340 YHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
            + + VHG  +  G + + +++ +A++DMY K GV D A  VFN++P ++VVSWN++I+G
Sbjct: 391 KNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISG 450

Query: 399 YAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG- 455
           Y QNG   EA+ +Y ++++E   +K +  T+VS+L+A  H    ++G         +HG 
Sbjct: 451 YTQNGLASEAIEVY-RMMEECREIKLNQGTWVSILAAYAHVGALQQGMR-------IHGH 502

Query: 456 ---ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
                  LD +   C+I+L G+   +  A+ L   +P + +S+ W+ ++S   + G   H
Sbjct: 503 LIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCHGIHG---H 558

Query: 511 GEMAARHLFELEPINAGP-YIMLSNMYAAC--------GRW 542
           GE A +   E++     P ++   ++ +AC        G+W
Sbjct: 559 GEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKW 599



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 225/518 (43%), Gaps = 60/518 (11%)

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F   Q  + E  D+   S  ++C + L     K++H  +VV     + F+   L ++YA 
Sbjct: 66  FHWRQPAKNEEIDFN--SLFDSCTKTL---LAKRLHALLVVSGKIQSNFISIRLVNLYAS 120

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSN 262
            G++  +R  FD++  +++ +WN MIS Y++NG  ++ ID F ++ L+     D  T   
Sbjct: 121 LGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPP 180

Query: 263 ILGAC-----------------FQ---------------TGRIDDAGRLFHVIKEKDNVC 290
           +L AC                 FQ                G +  A  LF  +  +D   
Sbjct: 181 VLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS 240

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  MI G  QNG    AL + +EM  E +  D  +++S++  CA+L  +    ++H   +
Sbjct: 241 WNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVI 300

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G++ +L VS+ALI+MY K G   DA  VF  M  R+VVSWNS+I  Y QN   + A  
Sbjct: 301 KHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARG 360

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
            + K+    L+PD  T VS+ S    +  ++  ++    I     +  ++     ++++ 
Sbjct: 361 FFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMY 420

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGP 528
            +   +D A  +   +P K + + W+TL+S     G         R + E   I  N G 
Sbjct: 421 AKLGVIDSAHKVFNLIPVK-DVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGT 479

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVK--KFAAYSWIEIDNKVHKF---------VS 577
           ++ +   YA  G  +    I   +   N+    F     I++  K  +          V 
Sbjct: 480 WVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP 539

Query: 578 EDRTHPETEIIY--------EELSKLIKKLQEAGFSPN 607
            + + P   II         E+  KL +++Q+ G  P+
Sbjct: 540 RESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPD 577



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 183/404 (45%), Gaps = 70/404 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++ D+  A  +  ++  +  E    F+ N L++ YAK G L  A+ +F +M LRD++S
Sbjct: 283 CAQLGDISTATLIHLYVIKHGLEFEL-FVSNALINMYAKFGNLGDAQKVFQQMFLRDVVS 341

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN++++A+ ++                D V+          +GF       F +MQ +  
Sbjct: 342 WNSIIAAYEQND---------------DPVT---------ARGF-------FFKMQLNGL 370

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           EP   T VS  +  AQ  D +  + +HG I+  G L   V + NA+ DMYAK G ID A 
Sbjct: 371 EPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAH 430

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF-------------------------- 245
            +F+ +  +++VSWN +ISGY +NG   + I+++                          
Sbjct: 431 KVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHV 490

Query: 246 ----QEMQLLG-LNPDEVTVSNILGACF-----QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
               Q M++ G L    + +   +G C      + GR+ DA  LF+ +  + +V W  +I
Sbjct: 491 GALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAII 550

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             +  +G  E AL LF EM  E V+PD  +  S++S+C+    +  G+         G+ 
Sbjct: 551 SCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIK 610

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
             L     ++D+  + G  + A+     MP     S W +++  
Sbjct: 611 PSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGA 654


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 371/676 (54%), Gaps = 72/676 (10%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  +    T +N ++L  ++ +HM L   +P T  + ++++ FYA SG           
Sbjct: 72  SYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQP-TALVGSKMVAFYASSGD---------- 120

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
                                +    ++F+ +    S+ +N+ I  +A  GF+   +  +
Sbjct: 121 ---------------------IDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATY 159

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M    F    +T    L +  +LL +  GK +HG I+   L  +++V  +L  +Y K 
Sbjct: 160 FSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKC 219

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           GEI+ A  +FD M  R++ SWN +++GY K+G                            
Sbjct: 220 GEINDAGKVFDNMTIRDVSSWNALLAGYTKSG---------------------------- 251

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPD 322
             C     ID A  +F  +  ++ V WTTMI GY+Q+G  + AL LF+EM+ ED  VRP+
Sbjct: 252 --C-----IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 304

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +I SV+ +CA+L++L  G+ +H  A  +G++ +  V  AL  MY KCG   DA   F+
Sbjct: 305 WVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFD 364

Query: 383 MMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
            +    +N+++WN+MI  YA  G  L+A++ + +++Q  ++PD  TF  +LS C H+ L 
Sbjct: 365 KLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLV 424

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G  +F+ +S  + I P ++HYAC+ +LLGR+  + +A  L+  +P      IW +LL+
Sbjct: 425 DVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLA 484

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C    +++  E AAR LF LEP N G Y++LSNMYA  GRW++V  +R+ +KS+  KK 
Sbjct: 485 ACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKS 544

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SWIEI+ K H F+  D +HP+ + IY  L  L +K++ AG+ P+T  VLHD  EEEK
Sbjct: 545 PGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEK 604

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
             ++  HSEKLA+A+ ++  P   T +R+ KN+R+CGDCH  M F S+I GR +I+RD N
Sbjct: 605 EFNLIAHSEKLAVAFGILNTP-AETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDIN 663

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF GG CSC D W
Sbjct: 664 RFHHFKGGCCSCGDYW 679



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 88/217 (40%), Gaps = 18/217 (8%)

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           + LS    P   S + V      L  L  G  VH   ++ G+    LV S ++  Y   G
Sbjct: 60  QPLSAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSG 119

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             D + +VFN +   + + +NSMI  YA+ G     +A Y  +       D FTF  VL 
Sbjct: 120 DIDSSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLK 179

Query: 433 ACLHADLFERGQNHFDSISAVHG----ITPSLDHYAC--MINLLGRSSDVDKAVDLIKSL 486
           + +       G+        VHG    I    D Y    +I L G+  +++ A  +  ++
Sbjct: 180 SSVELLSVWMGK-------CVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 232

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
             +  S  W+ LL+     G I     AA  +FE  P
Sbjct: 233 TIRDVS-SWNALLAGYTKSGCID----AALAIFERMP 264


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/642 (36%), Positives = 368/642 (57%), Gaps = 36/642 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+   AR+G +   + +FD +  R SV +   I  +   G + + +++F  M 
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHML 238

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GG 205
            D FEP  Y+  S ++AC +L  +R G+Q+H   +   L  +  V   L DMYAK     
Sbjct: 239 DDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMER 298

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++ AR +F  M   N++SW  +ISGY+++G Q    + LF+EM    + P+ +T SN+L
Sbjct: 299 SMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLL 358

Query: 265 GACFQTGRIDDAGRLFH--VIKEKD---NVCWTTMIVGYTQNGKEEDALILFNEM----- 314
            AC       D+GR  H  V+K      NV    ++  Y ++G  E+A   F+++     
Sbjct: 359 KACANLSD-QDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNI 417

Query: 315 --LSEDVRPDK------------------FSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
             +S DV  ++                  F+ +S++S+ A +  L  GQ +H  ++  G 
Sbjct: 418 LSMSPDVETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGF 477

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D  +S++L+ MY +CG  +DA   F+ M   NV+SW S+I+G A++G   +AL+++  
Sbjct: 478 RSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHD 537

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++   +KP+  T+++VLSAC H  L + G+ HF S+   HG+ P ++HYAC+++LL RS 
Sbjct: 538 MILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSG 597

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            V++A   I  +P K ++L+W TLLS C   G+ + GE+AA H+  LEP +  PY++LSN
Sbjct: 598 LVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSN 657

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA  G W++VA IRS M+ KN+ K    SW+++ N +H+F + D +HP    IY +L  
Sbjct: 658 LYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVT 717

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           LI+++++ G+ P+T +VLHD  EE K + +  HSEK+A+A+ LI       P+RI KN+R
Sbjct: 718 LIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTS-ATKPMRIFKNLR 776

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VC DCH  +K+ S   GR IILRDSNRFH    G CSC + W
Sbjct: 777 VCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/531 (25%), Positives = 232/531 (43%), Gaps = 96/531 (18%)

Query: 28  QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM-P 86
           +L+    R  D+ L + L   +  +        + N LL  Y+K G +  AR +FD+M  
Sbjct: 45  KLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCG 104

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +RD++SW A+ S  AR+G+                                RE+L++   
Sbjct: 105 VRDLVSWTAMASCLARNGA-------------------------------ERESLRLLGE 133

Query: 147 MQKDRFEPTDYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           M +    P  +T  +A  AC   +L  L  G  +   +  G  G +V V  AL DM+A+ 
Sbjct: 134 MLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARN 193

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G++  A+ +FD +  R  V W L+I+ Y++ G   K ++LF  M   G  PD  ++S+++
Sbjct: 194 GDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMI 253

Query: 265 GACFQTGRI--------------------------------------DDAGRLFHVIKEK 286
            AC + G +                                      + A ++F  +   
Sbjct: 254 SACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRH 313

Query: 287 DNVCWTTMIVGYTQNG-KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           + + WT +I GY Q+G +E + + LF EML+E +RP+  + S+++ +CA L+    G+ +
Sbjct: 314 NVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQI 373

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   +   +    +V +AL+ MY + G  ++A   F+ +   N++S +  +     N   
Sbjct: 374 HAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNA-- 431

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAV----HGITPSL 460
               +   K+   +    +FTF S+LSA     L  +GQ  H  S+ A      GI+ SL
Sbjct: 432 ----SCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSL 487

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
                M    G   D  +A D +K      N + W++++S     G  KHG
Sbjct: 488 ---VSMYARCGYLEDACRAFDEMK----DHNVISWTSIIS-----GLAKHG 526



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/506 (21%), Positives = 216/506 (42%), Gaps = 94/506 (18%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK---SGKLFYARDLFD 83
           + ++  CT +  V L ++L S + L     + + +   L+  YAK      + +AR +F 
Sbjct: 250 SSMISACTELGSVRLGQQLHS-VALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFK 308

Query: 84  KMPLRDIISWNALLSAHARSGSVQ-DLRALFDKM-------------------------- 116
            MP  +++SW AL+S + +SG  + ++ ALF +M                          
Sbjct: 309 TMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQD 368

Query: 117 --------PIRDSVSY-----NTAIAGFANKGFSREALQVFSRMQK-------------- 149
                    ++ S+++     N  ++ +A  G   EA + F ++ +              
Sbjct: 369 SGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETER 428

Query: 150 ------DRFEPTD-----YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
                  + E  D     +T  S L+A A +  L +G+++H   +      +  + N+L 
Sbjct: 429 NNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLV 488

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
            MYA+ G ++ A   FD M + N++SW  +ISG  K+G  K+ + +F +M L G+ P++V
Sbjct: 489 SMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDV 548

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNE 313
           T   +L AC   G + +    F  +++   +      +  ++    ++G  E+A    NE
Sbjct: 549 TYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINE 608

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCK 370
           M     + D     +++S+C    +   G++     + L   D    +L+S    ++Y  
Sbjct: 609 M---PCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLS----NLYAD 661

Query: 371 CGVTDDAWTVFNMMPTRNV-----VSW----NSMINGYAQNGQDLEALALYDKLLQENLK 421
            G+ D+   + ++M  +N+     +SW    N++    A +     A+ +Y KL+    +
Sbjct: 662 AGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIRE 721

Query: 422 PDSFTFVSVLSACLHADLFERGQNHF 447
                +V   S  LH D+ E  +  +
Sbjct: 722 IKDIGYVPDTSIVLH-DMSEELKEQY 746



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 140/308 (45%), Gaps = 19/308 (6%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           L+ D V  +++L    + G ++ A R+F  +   +D V WT M     +NG E ++L L 
Sbjct: 72  LDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLL 131

Query: 312 NEMLSEDVRPDKFSISSVVSSC--AKLASLYHGQVVHGKAVVLGV-DDDLLVSSALIDMY 368
            EML   +RP+ F++ +   +C   +L  L  G VV G  +  G    D+ V  ALIDM+
Sbjct: 132 GEMLELGLRPNAFTLCAAARACFPQELFRLA-GGVVLGFVLKTGFWGTDVSVGCALIDMF 190

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            + G    A  VF+ +  R  V W  +I  Y Q G   + + L+  +L +  +PD ++  
Sbjct: 191 ARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMS 250

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPS-------LDHYACMINLLGRSSDVDKAVD 481
           S++SAC        GQ    S++   G+          +D YA     L     ++ A  
Sbjct: 251 SMISACTELGSVRLGQ-QLHSVALRLGLVSDSCVSCGLVDMYA----KLKMERSMEHARK 305

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           + K++P + N + W+ L+S     G  ++  MA       E I    +I  SN+  AC  
Sbjct: 306 VFKTMP-RHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPN-HITYSNLLKACAN 363

Query: 542 WEDVASIR 549
             D  S R
Sbjct: 364 LSDQDSGR 371


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/707 (33%), Positives = 392/707 (55%), Gaps = 84/707 (11%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           YT L+  CT    +   K L +H+                     KSG LF     F   
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHI--------------------LKSGSLF---SFFG-- 38

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
                   + L+  + +   + + R LFD+MP R  V++N+ I+   ++G ++EA++++S
Sbjct: 39  --------HKLIDGYIKCSVITEARKLFDEMPNRHIVTWNSMISSHVSRGKTKEAIELYS 90

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKG 204
            M  +   P  YT  +   A +++   R G++ HG  +V+G    + FV   + DMYAK 
Sbjct: 91  NMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKF 150

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G++  AR++FDR+ ++++V +  +I GY ++G   + +++F++M    + P+E T++++L
Sbjct: 151 GKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEDMVGSRIKPNEYTLASVL 210

Query: 265 GACFQTG-----------------------------------RIDDAGRLFHVIKEKDNV 289
            +C   G                                    ++D+ ++F+ +    +V
Sbjct: 211 VSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHV 270

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT+ IVG  QNG+EE AL +F EM+   + P+ F++SS++ +C+ LA L  G+ +H   
Sbjct: 271 TWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHACSSLAMLEAGEQIHAVT 330

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V LGVD +  V +ALI +Y KCG  + A +VF+ +   ++VS N+MI  YAQNG   EAL
Sbjct: 331 VKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSINTMIYAYAQNGFGHEAL 390

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L+++L +  L+P+  TF+S+L AC +A L E G   F  I   H I  + DHY CMI+L
Sbjct: 391 ELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDL 450

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+   ++A  LI+     P+ + W TLL+ C + G+++  E   + + +  P + G +
Sbjct: 451 LGRAKRFEEATMLIEE-GKNPDVIQWRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTH 509

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I+L+N+YA+ G+W++V  ++S+ +   +KK  A SW++ID +VH F++ D +HP    I 
Sbjct: 510 ILLTNIYASAGKWDNVIEMKSAGRDLRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEIS 569

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
           E L +LI+K+   G++P+TK VL D +EE+K+ ++ YHSEKLA+A+ L K     T IRI
Sbjct: 570 EMLHELIEKVITLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRI 629

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+RVCGD               II RD+ RFHHF GG CSCKD W
Sbjct: 630 FKNLRVCGD--------------YIIARDAKRFHHFKGGICSCKDYW 662


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/718 (34%), Positives = 393/718 (54%), Gaps = 47/718 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T +++ Q++  C    D+   K L + + L    P++T+L N  +  Y+K   L  A   
Sbjct: 7   TLQSFRQILKSCIANKDLLTGKSLHT-IYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHA 65

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F++    ++ S+NAL++A+A+   +     LFD++P  D VS+NT I  +A++G +  AL
Sbjct: 66  FNQTHEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSAL 125

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F  M++       +T    + AC   + L R  Q+H           V V+N+L   Y
Sbjct: 126 SLFGEMREMGLVMDGFTFSGVITACCNHVGLIR--QLHSLAFSSGFDSYVSVKNSLLTYY 183

Query: 202 AKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           +K G +++A  +F+ M    R+ VSWN MI  Y ++ +  K + L+++M   G   D  T
Sbjct: 184 SKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 260 VSNILG--ACFQ------------------------TGRID----------DAGRLFHVI 283
           ++++L   +C +                        +G ID          ++ ++F  I
Sbjct: 244 LASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEI 303

Query: 284 KEKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
              D V W TMI GY+QN +   +AL  F +M      PD  S    +S+C+ L+S   G
Sbjct: 304 CGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG 363

Query: 343 QVVHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           +  H  A+   +  + + V++AL+ MY KCG   DA  +F  MP  N V+ NS+I GYAQ
Sbjct: 364 KQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQ 423

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G   E+L L++++L  ++ P S T VS+LSAC H    E G+ +F+ +  + GI P  +
Sbjct: 424 HGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAE 483

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           HY+CMI+LLGR+  + +A  LI ++P  P S  W+ LL  C   G+++  E AA    +L
Sbjct: 484 HYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQL 543

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           EP NA PYIML++MY+A  +WE+ A IR  M+ + ++K    SWIE++ +VH FV+ED +
Sbjct: 544 EPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNS 603

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVL---HDTQEEEKVKSICYHSEKLALAYCLI 638
           HP  + I+  L ++  K++ AG+ P+ +       +T E+EK   + +HSEKLA+A+ L+
Sbjct: 604 HPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLL 663

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              HG  P+ ++KN+R+CGDCH  +KF S I  R I +RD+ RFH F  G CSC D W
Sbjct: 664 FTKHG-EPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/620 (37%), Positives = 347/620 (55%), Gaps = 37/620 (5%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           L    P R  V++   I+G    G+   AL  FS+M+++  +P D+T   A  A   L  
Sbjct: 14  LLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCL 73

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              GKQIH   +      + FV  +  DMY+K G   +A+ LFD M  RN+  WN  IS 
Sbjct: 74  PFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISN 133

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
            + +G+P K ID F E + +G  PD +T    L AC                        
Sbjct: 134 AVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGD 193

Query: 268 --FQTGRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                G ID  G+         +F+ +  +++V W TM+    QN ++E A ++F     
Sbjct: 194 VSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRK 253

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           E +    + +SSV+S+ A ++ L  G+ VH  AV   V+ D+ V SAL+DMY KCG  +D
Sbjct: 254 EGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIED 313

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
              VF+ MP RN+VSWN+MI+GYA  G    A+ L++++  E +  +  T + VLSAC  
Sbjct: 314 CEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVLSACSR 372

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
               + G   F+S+   + I P  +HYAC+ ++LGR+  V++A + ++ +P +P   +W 
Sbjct: 373 GGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWG 432

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            LL+ C + G+ + G++AA +LF+L+P ++G +++LSNM+AA GRW++   +R  MK   
Sbjct: 433 ALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVG 492

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           +KK A  SW+   NKVH F ++D +H     I   L KL  ++Q AG+ P+T   L+D +
Sbjct: 493 IKKGAGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLE 552

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           EEEK+  + YHSEK+ALA+ LI  P GV PIRI KN+R+CGDCH   KF S I+GR II+
Sbjct: 553 EEEKMTEVGYHSEKIALAFGLIALPPGV-PIRITKNLRICGDCHSAFKFISGIVGREIIV 611

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD+NRFH F    CSC+D W
Sbjct: 612 RDNNRFHRFRDSQCSCRDFW 631



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 48/347 (13%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           ++++G   + + LFD+MP R+   +N  I+     G   +A+  F   ++   EP   T 
Sbjct: 103 YSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITF 162

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
            + LNACA    L  G+Q+HG ++     G+V V N + D+Y K  E++ A  +F+ M  
Sbjct: 163 CAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGR 222

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-------------- 265
           RN VSW  M++   +N + +K   +F   +  G+   +  VS+++               
Sbjct: 223 RNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSV 282

Query: 266 ------ACFQ---------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                 AC +                G I+D  ++FH + E++ V W  MI GY   G  
Sbjct: 283 HALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDV 342

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS--- 361
           + A+ LF EM SE V  +  ++  V+S+C++      G V  G  +   + D   +    
Sbjct: 343 DMAMTLFEEMQSEAV-ANYVTLICVLSACSR-----GGAVKLGNEIFESMRDRYRIEPGA 396

Query: 362 ---SALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ 404
              + + DM  + G+ + A+     MP R  +S W +++N     G+
Sbjct: 397 EHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGE 443



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 1/198 (0%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N ++  + +   V+    +F+ M  R+SVS+ T +A         +A  VF   +
Sbjct: 193 DVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGR 252

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K+  E TDY   S ++A A +  L  G+ +H   V   + G++FV +AL DMY K G I+
Sbjct: 253 KEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIE 312

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
               +F  M  RNLVSWN MISGY   G     + LF+EMQ   +  + VT+  +L AC 
Sbjct: 313 DCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACS 371

Query: 269 QTGRIDDAGRLFHVIKEK 286
           + G +     +F  ++++
Sbjct: 372 RGGAVKLGNEIFESMRDR 389



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 164/378 (43%), Gaps = 42/378 (11%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY+K    + A+ L      R +V+W  +ISG ++NG     +  F +M+   + P++ T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 260 VS----------------NILGACFQTGRIDD-------------------AGRLFHVIK 284
                              I     + G+I+D                   A RLF  + 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            ++   W   I     +G+   A+  F E       PD  +  + +++CA    L  G+ 
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  +  G + D+ V++ +ID+Y KC   + A  VFN M  RN VSW +M+    QN +
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY 463
             +A  ++    +E ++   +   SV+SA       E G++ H  ++ A   +   +   
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKAC--VEGDIFVG 298

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + ++++ G+   ++    +   +P + N + W+ ++S  A +GD+   +MA     E++ 
Sbjct: 299 SALVDMYGKCGSIEDCEQVFHEMPER-NLVSWNAMISGYAHQGDV---DMAMTLFEEMQS 354

Query: 524 INAGPYIMLSNMYAACGR 541
                Y+ L  + +AC R
Sbjct: 355 EAVANYVTLICVLSACSR 372



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 49/226 (21%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L+  Y K G +     +F +MP R+++SWNA++S +A  G V     LF++M   
Sbjct: 296 FVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSE 355

Query: 120 DSVSYNTAI---AGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRG 175
              +Y T I   +  +  G  +   ++F  M+ + R EP    +     AC         
Sbjct: 356 AVANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHY-----AC--------- 401

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLK 234
                                + DM  + G +++A     +M  R  +S W  +++    
Sbjct: 402 ---------------------IADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRV 440

Query: 235 NGQPKKCIDLFQEMQLLGLNP----DEVTVSNILGACFQTGRIDDA 276
            G+P+  +       L  L+P    + V +SN+  A    GR D+A
Sbjct: 441 YGEPE--LGKIAADNLFKLDPKDSGNHVLLSNMFAA---AGRWDEA 481


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/582 (37%), Positives = 348/582 (59%), Gaps = 8/582 (1%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNACAQLLDLRRGKQI 178
           +V +N  I         R+AL +F+ M+       P  YT+  AL +C+   DL  G QI
Sbjct: 86  TVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQI 145

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +    L  NV+V ++   MY++ G  + A  +FD M +R++VSWN MI+G+ + G  
Sbjct: 146 HSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLF 205

Query: 239 KKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTM 294
            + I++F++  +L G  PD  T++ IL A     + DD     R+F  ++ K+ + W  M
Sbjct: 206 DRAIEVFKQFVVLQGSMPDAGTMAGILPA-MGNAKPDDIRFVRRVFDNMQFKELISWNAM 264

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           +  Y  N     A+ LF  M  ++V PD  ++++V+  C +L++   G+ +H       +
Sbjct: 265 LAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNM 324

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +LL+ +AL+DMY  CG   DA  +F++M  R+V+SW S+I+ Y ++G   EA+ L++K
Sbjct: 325 CPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEK 384

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +L + L+PDS  FV+VL+AC HA L   G+++FDS+++ + I P  +HY CM++LLGR+ 
Sbjct: 385 MLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAG 444

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A D I ++  +PN  +W  LL  C +  ++  G +AA +LF L P   G Y++LSN
Sbjct: 445 CINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSN 504

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           MYA  GRW DV S+RS M +K +KKF   S +E+ ++VH F   DR HP++E+IY +L +
Sbjct: 505 MYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDE 564

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L+ K++  G++P  +  LHD +EE+K   +  HSEKLA+A+ L+    G T IR+  N+R
Sbjct: 565 LLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPG-TIIRVTMNLR 623

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            C DCHL  K  S I  R I+L+D+NR HH V G CSC D W
Sbjct: 624 TCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 198/429 (46%), Gaps = 64/429 (14%)

Query: 13  TLYSRGQAATEEAYT-QLVL-DCTRVNDVELAKRLQS-----HMDLNFYEPNTTFLHNRL 65
           ++  RG A   + YT  L L  C+   D+ L  ++ S      +D N Y  ++       
Sbjct: 111 SMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSA------ 164

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHAR-----------------SGSVQD 108
           +  Y++ G+   A  +FD MP RD++SWNA+++  AR                  GS+ D
Sbjct: 165 ISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPD 224

Query: 109 ---------------------LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
                                +R +FD M  ++ +S+N  +A +AN  F  +A+++F  M
Sbjct: 225 AGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLM 284

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +KD  EP   T  + L  C +L     GK+IH  I   N+  N+ + NAL DMYA  G +
Sbjct: 285 EKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCL 344

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR +FD M+ R+++SW  +IS Y K+G  ++ +DLF++M   GL PD +    +L AC
Sbjct: 345 KDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAAC 404

Query: 268 FQTGRIDDAGRLF-------HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
              G + D    F       H+I + ++  +T M+    + G   +A      ML E   
Sbjct: 405 SHAGLLADGKHYFDSMTSRYHIIPKAEH--YTCMVDLLGRAGCINEAYDFITTMLIE--- 459

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P++    +++ +C   +++  G V       L V +       L +MY + G   D  +V
Sbjct: 460 PNERVWGALLQACRIHSNMDIGLVAADNLFSL-VPEQTGYYVLLSNMYARAGRWADVTSV 518

Query: 381 FNMMPTRNV 389
            ++M  + +
Sbjct: 519 RSVMVNKGI 527


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/673 (35%), Positives = 363/673 (53%), Gaps = 65/673 (9%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALF--DKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           R+   +NALLS +AR G V D + LF      + D V++NT I+     G   EA+QV  
Sbjct: 190 RERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLY 249

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKG 204
            M      P   T  SAL AC++L  L  G+++H  ++  + L  N FV +AL DMYA  
Sbjct: 250 DMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASN 309

Query: 205 GEIDKARWLFDRM--NNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQL-LGLNPDEVTV 260
            ++  AR +FD +  + R L  WN MI GY ++G   ++ I+LF  M+   G  P E T+
Sbjct: 310 EQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTM 369

Query: 261 SNILGACFQT-----------------------------------GRIDDAGRLFHVIKE 285
           + +L AC ++                                   GR+D+A  +F +I  
Sbjct: 370 AGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDL 429

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEML--------------------SEDVRPDKFS 325
           +D V W T+I G    G   +A  L  EM                      +   P+  +
Sbjct: 430 RDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNIT 489

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           + +++  CA LA+   G+ +HG AV   ++ DL V SAL+DMY KCG    A  VF+ +P
Sbjct: 490 LMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLP 549

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQ 444
            RNV++WN +I  Y  +G   EALAL+D+++      P+  TF++ L+AC H+ L +RG 
Sbjct: 550 RRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGL 609

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVCA 503
             F  +   +G  P+   +AC++++LGR+  +D+A  +I S+ P +     WST+L  C 
Sbjct: 610 ELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACR 669

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           +  ++K G +AA  LFELEP  A  Y++L N+Y+A G WE+   +R  M+ + V K    
Sbjct: 670 LHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGC 729

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SWIE+D  +H+F++ +  HPE+  ++  +  L ++++  G+ P+T  VLHD  E EK   
Sbjct: 730 SWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAAM 789

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           + YHSEKLA+A+ L++ P G T IR+ KN+RVC DCH   KF S ++GR I+LRD  RFH
Sbjct: 790 LRYHSEKLAIAFGLLRAPPGAT-IRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFH 848

Query: 684 HFVGGNCSCKDNW 696
           HF  G CSC D W
Sbjct: 849 HFRDGTCSCGDYW 861



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 216/482 (44%), Gaps = 72/482 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           NALL+A+AR G +    ALF   P  +RD+VSYN+ I+          AL     M  D 
Sbjct: 89  NALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADH 148

Query: 152 FEPTDYTHVSALNACAQLLDL--RRGKQIHGKIVVGNL---GGNVFVRNALTDMYAKGGE 206
            E + +T VS L AC+ L D   R G++ H   +       G   F  NAL  MYA+ G 
Sbjct: 149 -EVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGL 207

Query: 207 IDKARWLF--DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           +D A+ LF        +LV+WN MIS  ++ G+ ++ + +  +M  LG+ PD VT ++ L
Sbjct: 208 VDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASAL 267

Query: 265 GAC-----FQTGR-------------------------------IDDAGRLFHVIKEKDN 288
            AC        GR                               +  A R+F ++ E   
Sbjct: 268 PACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGR 327

Query: 289 VC--WTTMIVGYTQNGK-EEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQV 344
               W  MI GY Q+G  +E+A+ LF+ M +E    P + +++ V+ +CA+       + 
Sbjct: 328 QLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEA 387

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VHG  V   +  +  V +AL+DMY + G  D+A T+F M+  R++VSWN++I G    G 
Sbjct: 388 VHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGL 447

Query: 405 DLEALALY------------DKLLQ--------ENLKPDSFTFVSVLSACLHADLFERGQ 444
             EA  L             + +L+        +   P++ T +++L  C       RG+
Sbjct: 448 ISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGK 507

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                 +  H +   L   + ++++  +   +  A  +   LP + N + W+ L+    M
Sbjct: 508 E-IHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRR-NVITWNVLIMAYGM 565

Query: 505 KG 506
            G
Sbjct: 566 HG 567



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 113/227 (49%), Gaps = 14/227 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YA+ G++  A  +F  + LRDI+SWN L++     G + +   L  +M + 
Sbjct: 402 FVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLP 461

Query: 120 DS-VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            S  S  T + G                +   R  P + T ++ L  CA L    RGK+I
Sbjct: 462 SSAASGETMLEGDDTS------------VDGQRCMPNNITLMTLLPGCAVLAAPARGKEI 509

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG  V   L  ++ V +AL DMYAK G +  AR +FDR+  RN+++WN++I  Y  +G  
Sbjct: 510 HGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLG 569

Query: 239 KKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
            + + LF  M   G   P+EVT    L AC  +G +D    LF  +K
Sbjct: 570 DEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMK 616



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 6/106 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-----PIR 119
           L+  YAK G L  AR +FD++P R++I+WN L+ A+   G   +  ALFD+M        
Sbjct: 528 LVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATP 587

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALN 164
           + V++  A+A  ++ G     L++F  M++D  FEPT Y H   ++
Sbjct: 588 NEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVD 633


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/658 (33%), Positives = 365/658 (55%), Gaps = 68/658 (10%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           + D   LF+ +    ++++ + I  + + G   ++L  F  M      P      S L +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-------------GGEI----- 207
           CA L+DL  G+ +HG I+   L  +++  NAL +MY+K              GE+     
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 208 --------------DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
                         D  R +F+ M  ++LVSWN +I+G  +NG  ++ + + +EM    L
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 254 NPDEVTVSNIL----------------GACFQTG-------------------RIDDAGR 278
            PD  T+S++L                G   + G                   R+ D+ R
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR 295

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F ++ E+D + W ++I G  QNG  ++ L  F +ML   ++P  +S SS++ +CA L +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L+ G+ +HG     G D+++ ++S+L+DMY KCG    A  +F+ M  R++VSW +MI G
Sbjct: 356 LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG 415

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            A +GQ  +A+ L++++  E +KP+   F++VL+AC H  L +    +F+S++   GI P
Sbjct: 416 CALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAP 475

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            ++HYA + +LLGR+  +++A D I  +   P   IW+TLLS C +  +I   E  A  +
Sbjct: 476 GVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRI 535

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            E++P N G YI+L+N+Y+A  RW++ A  R+SM+   ++K  A SWIE+ NKV+ F++ 
Sbjct: 536 LEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAG 595

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP  E I E +  L++ +++ G+ P+T  V HD +EE+K   +C HSE+LA+ + +I
Sbjct: 596 DESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGII 655

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P G+T IR+ KN+RVC DCH   KF S I+GR I++RD++RFHHF  G CSC D W
Sbjct: 656 NTPAGMT-IRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 208/471 (44%), Gaps = 98/471 (20%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-----MDLNFYEPNTTFLHNRLLHF 68
           + + G       +  ++  C  + D+ L + L  +     +D + Y  N        L F
Sbjct: 97  MLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 156

Query: 69  YAKSGK-LFYARDLFDKMPLRDIISWNALLSAHARSGSV---QDLRALFDKMPIRDSVSY 124
             +SG+    A ++FD+M  R         +   R+ SV     +R +F+ MP +D VS+
Sbjct: 157 LEESGRQRLGAGEVFDEMTER---------TRSVRTVSVLSEDSVRKIFEMMPEKDLVSW 207

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           NT IAG A  G   E L++   M     +P  +T  S L   A+ +D+ RGK+IHG  + 
Sbjct: 208 NTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIR 267

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +++V ++L DMYAK   +  +  +F  +  R+ +SWN +I+G ++NG   + +  
Sbjct: 268 QGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRF 327

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           F++M +  + P   + S+I+ AC                                    +
Sbjct: 328 FRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAK 387

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I  A ++F  ++ +D V WT MI+G   +G+  DA+ LF +M +E ++P+  +  +V
Sbjct: 388 CGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAV 447

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN- 388
           +++C+      HG                             G+ D+AW  FN M TR+ 
Sbjct: 448 LTACS------HG-----------------------------GLVDEAWKYFNSM-TRDF 471

Query: 389 -----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
                V  + ++ +   + G+  EA   YD +   ++ P    + ++LSAC
Sbjct: 472 GIAPGVEHYAAVSDLLGRAGRLEEA---YDFICGMHIGPTGSIWATLLSAC 519


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 346/590 (58%), Gaps = 40/590 (6%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F+++   +   YN  I G+  +   +E+ + +S M+K+   P  +T  +   AC   +
Sbjct: 101 SIFNQVNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKM 160

Query: 171 DLRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           D+  G+QIHG+ I+VG  G ++ V N++ DMY K G ++  R +FD M NR+++SW  +I
Sbjct: 161 DVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELI 220

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           S Y+K                                   +G ++ AG LF  +  KD V
Sbjct: 221 SAYVK-----------------------------------SGNMESAGELFDGLPVKDMV 245

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT M+ G+ QN K  +A++ F +M    V  D+ ++  V+S+CA+L +  +   +   A
Sbjct: 246 AWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVA 305

Query: 350 --VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
                G    ++V SALIDMY KCG   DA+ VF  M  RNV S++SMI G+A +G+  +
Sbjct: 306 EKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHD 365

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ L+D++++  +KP+  TF+ VL+AC HA + E+G   F+ +   +GI PS DHY CM+
Sbjct: 366 AMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMV 425

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  + +A +L+K++P +P+  +W  LL  C +        +AA HLFELEP   G
Sbjct: 426 DLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIG 485

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID-NKVHKFVSEDRTHPETE 586
            YI+L+N+YA+CGRW DV+++R  M+++ ++K  A+SWIE +   VH+F S D THP + 
Sbjct: 486 NYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSG 545

Query: 587 IIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
            I + L  L+ +L+  G+ P+   V +D  +E+K + +  HSEKLALA+ LI    G + 
Sbjct: 546 EIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPG-SK 604

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IRI+KN+R+C DCH  +  AS I GR II+RD  RFHHF  G CSC + W
Sbjct: 605 IRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 184/384 (47%), Gaps = 21/384 (5%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G       +T L   C    DV L +++     L         + N ++  Y K G L  
Sbjct: 141 GVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLEC 200

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
            R +FD+MP RD+ISW  L+SA+ +SG+++    LFD +P++D V++   ++GFA     
Sbjct: 201 GRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKP 260

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG--NVFVRN 195
           REA+  F +MQ+   E  + T +  ++ACAQL   +    I         GG  +V V +
Sbjct: 261 REAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGS 320

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL DMY+K G +  A  +F  M  RN+ S++ MI G+  +G+    + LF EM    + P
Sbjct: 321 ALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKP 380

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALIL 310
           + VT   +L AC   G ++   ++F ++++   +      +T M+    + G+ ++A  L
Sbjct: 381 NRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHEL 440

Query: 311 FNEMLSEDVRPDKFSISSVVSSC-----AKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
              M    + P      +++ +C       +A++    +   +   +G  + +L    L 
Sbjct: 441 VKTM---PIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIG--NYIL----LA 491

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNV 389
           ++Y  CG  +D  TV  +M TR +
Sbjct: 492 NIYASCGRWNDVSTVRKLMRTRGL 515



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 9/201 (4%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW--TVFNMM 384
           S +V++     +L   + VH + ++ G+D    V + LI    K  +  D +  ++FN +
Sbjct: 47  SQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQV 106

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERG 443
              N   +N++I GY    +  E+   Y  + +E + P SFTF ++  AC    D+    
Sbjct: 107 NYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGR 166

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           Q H  +I  V G    L     MI++  +   ++    +   +P++ + + W+ L+S   
Sbjct: 167 QIHGQTI-LVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNR-DVISWTELISAYV 224

Query: 504 MKGDIKHGEMAARHLFELEPI 524
             G+++    +A  LF+  P+
Sbjct: 225 KSGNME----SAGELFDGLPV 241


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 352/603 (58%), Gaps = 36/603 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL++ +A  G + D R LFDKM  RD V++N  I G++        L+++  M+    E
Sbjct: 155 SALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTE 214

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P      + L+ACA   +L  GK IH  I          ++ +L +MYA  G +  AR +
Sbjct: 215 PDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREV 274

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           +D++ ++++V    M+SGY K                                    G +
Sbjct: 275 YDQLPSKHMVVSTAMLSGYAK-----------------------------------LGMV 299

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            DA  +F  + EKD VCW+ MI GY ++ +  +AL LFNEM    + PD+ ++ SV+S+C
Sbjct: 300 QDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISAC 359

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A + +L   + +H  A   G    L +++ALIDMY KCG    A  VF  MP +NV+SW+
Sbjct: 360 ANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWS 419

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           SMIN +A +G    A+AL+ ++ ++N++P+  TF+ VL AC HA L E GQ  F S+   
Sbjct: 420 SMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINE 479

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           H I+P  +HY CM++L  R++ + KA++LI+++P  PN +IW +L+S C   G+I+ GE 
Sbjct: 480 HRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEF 539

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  L ELEP + G  ++LSN+YA   RW+DV  +R  MK K V K  A S IE++N+VH
Sbjct: 540 AATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVH 599

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F+  DR H +++ IY++L  ++ +L+  G++P+T  +L D +EEEK + + +HSEKLAL
Sbjct: 600 VFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLAL 659

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            Y LI +    + IRI+KN+R+C DCH FMK  S +    I++RD  RFHHF GG CSC+
Sbjct: 660 CYGLIGE-RKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCR 718

Query: 694 DNW 696
           D W
Sbjct: 719 DYW 721



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 178/364 (48%), Gaps = 14/364 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C    ++   K +   +  N +   +  +   L++ YA  G +  AR+++D++P + ++ 
Sbjct: 227 CAHAGNLSYGKAIHQFIKDNGFRVGS-HIQTSLVNMYANCGAMHLAREVYDQLPSKHMVV 285

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
             A+LS +A+ G VQD R +FD+M  +D V ++  I+G+A      EALQ+F+ MQ+ R 
Sbjct: 286 STAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRI 345

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T +S ++ACA +  L + K IH        G  + + NAL DMYAK G + KAR 
Sbjct: 346 VPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKARE 405

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ M  +N++SW+ MI+ +  +G     I LF  M+   + P+ VT   +L AC   G 
Sbjct: 406 VFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGL 465

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +++  + F  +  +  +      +  M+  Y +      A+ L   M      P+     
Sbjct: 466 VEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETM---PFPPNVIIWG 522

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           S++S+C     +  G+    + + L  D D  L+V   L ++Y K    DD   V  +M 
Sbjct: 523 SLMSACQNHGEIELGEFAATRLLELEPDHDGALVV---LSNIYAKEKRWDDVGLVRKLMK 579

Query: 386 TRNV 389
            + V
Sbjct: 580 HKGV 583



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 195/419 (46%), Gaps = 57/419 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L+  YA  G++  AR LFDKM  RD+++WN ++  ++++     +  L+++M   
Sbjct: 152 FIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTS 211

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
               D++   T ++  A+ G       +   ++ + F    +   S +N  A    +   
Sbjct: 212 GTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLA 271

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           ++++ ++       ++ V  A+   YAK G +  AR++FDRM  ++LV W+ MISGY ++
Sbjct: 272 REVYDQLP----SKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAES 327

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA------------GR----- 278
            QP + + LF EMQ   + PD++T+ +++ AC   G +  A            GR     
Sbjct: 328 YQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPIN 387

Query: 279 ------------------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                             +F  +  K+ + W++MI  +  +G  + A+ LF+ M  +++ 
Sbjct: 388 NALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIE 447

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVT 374
           P+  +   V+ +C+     + G V  G+     + ++  +S        ++D+YC+    
Sbjct: 448 PNGVTFIGVLYACS-----HAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHL 502

Query: 375 DDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             A  +   MP   NV+ W S+++   QN  ++E        L E L+PD    + VLS
Sbjct: 503 RKAMELIETMPFPPNVIIWGSLMSA-CQNHGEIELGEFAATRLLE-LEPDHDGALVVLS 559



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 1/173 (0%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +D A  LF  I          ++  +++    E+ L L+  +       D+FS   ++ +
Sbjct: 65  LDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKA 124

Query: 333 CAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            +KL++L  G  +HG A   G    D  + SALI MY  CG   DA  +F+ M  R+VV+
Sbjct: 125 VSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVT 184

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           WN MI+GY+QN      L LY+++     +PD+    +VLSAC HA     G+
Sbjct: 185 WNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGK 237


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 382/689 (55%), Gaps = 68/689 (9%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGF 131
            K  +A+ L   +P   ++S   +LS ++    + D   +F+ +P    ++++ + I  +
Sbjct: 24  AKQLHAQILRTSLPSPSLLS--TILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCY 81

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
            + G    +L  F +M      P      S L +C  + DLR G+ +HG I+   +G ++
Sbjct: 82  TSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDL 141

Query: 192 FVRNALTDMYAKGGEIDKA-----------------------------RWLFDRMNNRNL 222
           +  NAL +MY+K   +++                              R +F+ M  R++
Sbjct: 142 YTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDI 201

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GA 266
           VSWN +ISG  +NG  +  + + +EM    L PD  T+S++L                G 
Sbjct: 202 VSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGY 261

Query: 267 CFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
             + G                   R+DD+ R+F+++ + D + W ++I G  QNG  ++ 
Sbjct: 262 AIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEG 321

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L  F +ML   ++P+  S SS++ +CA L +L+ G+ +HG  +    D ++ ++SAL+DM
Sbjct: 322 LKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDM 381

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG    A  +F+ M   ++VSW +MI GYA +G   +A++L+ ++  E +KP+   F
Sbjct: 382 YAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAF 441

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           ++VL+AC HA L +    +F+S++  + I P L+HYA + +LLGR   +++A + I  + 
Sbjct: 442 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 501

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P   +WSTLL+ C +  +I+  E  ++ LF ++P N G Y++LSN+Y+A GRW+D   
Sbjct: 502 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 561

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +R +M+ K +KK  A SWIEI NKVH FV+ D++HP  + I E L  L+++++  G+  +
Sbjct: 562 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 621

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           T  VLHD +EE+K   +C HSE+LA+ + +I  P G T IR+ KN+RVC DCH   KF S
Sbjct: 622 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTT-IRVTKNLRVCVDCHTATKFIS 680

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I+GR I++RD++RFHHF  G CSC D W
Sbjct: 681 KIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/443 (24%), Positives = 197/443 (44%), Gaps = 69/443 (15%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQS-----HMDLNFYEPNTT 59
           H L   I  L S G+      +  ++  CT + D+   + +        M  + Y  N  
Sbjct: 89  HSLSFFIQMLAS-GKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNA- 146

Query: 60  FLHNRLLHFYAKSGKLFYA---RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
                L++ Y+K   L      + +FD+    D+ S          S  +  LR +F+ M
Sbjct: 147 -----LMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS-----KKEKESYYLGSLRKVFEMM 196

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P RD VS+NT I+G A  G   +AL +   M      P  +T  S L   A+ ++L +GK
Sbjct: 197 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 256

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IHG  +      +VF+ ++L DMYAK   +D +  +F  +   + +SWN +I+G ++NG
Sbjct: 257 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 316

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
              + +  FQ+M +  + P+ V+ S+I+ AC                             
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIAS 376

Query: 268 ------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                  + G I  A  +F  ++  D V WT MI+GY  +G   DA+ LF  M  E V+P
Sbjct: 377 ALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKP 436

Query: 322 DKFSISSVVSSCAKLASL-----YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           +  +  +V+++C+    +     Y   +     ++ G++      +A+ D+  + G  ++
Sbjct: 437 NYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH----YAAVADLLGRVGRLEE 492

Query: 377 AWTVFNMM---PTRNVVSWNSMI 396
           A+   + M   PT +V  W++++
Sbjct: 493 AYEFISDMHIEPTGSV--WSTLL 513


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 350/608 (57%), Gaps = 32/608 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  NAL+  + +    +  R +F+ MP RD +S+ +  + + N G  REAL  F +M 
Sbjct: 112 DVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMG 171

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P   T  S L AC  L DL+ G+++HG +V   +GGNVFV +AL +MYA    I 
Sbjct: 172 LNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIR 231

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A+ +FD M+ R+ VSWN++I+ Y  N + +K + +F  M   G+  +  +         
Sbjct: 232 QAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYAS--------- 282

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
                                 W  +I G  QNG+ E AL + + M +   +P++ +I+S
Sbjct: 283 ----------------------WNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITS 320

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+ +C  L SL  G+ +HG         DL  ++AL+ MY KCG  + +  VF+MM  R+
Sbjct: 321 VLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRD 380

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
            VSWN+MI   + +G   EAL L+ +++   ++P+S TF  VLS C H+ L + G   FD
Sbjct: 381 TVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFD 440

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S+S  H + P  DH++CM+++L R+  +++A + IK +P +P +  W  LL  C +  ++
Sbjct: 441 SMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNV 500

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + G +AA  LFE+E  N G Y++LSN+  +   W + +  R  M+ + V K    SWI++
Sbjct: 501 ELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
            N+VH FV  D+++ +++ IY  L  + +K++ AG+ PNT  VL D  +EEK + +C HS
Sbjct: 561 RNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHS 620

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           EKLA+A+ ++   +G + IR+ KN+R+CGDCH  +KF + I+G  II+RDS RFHHF  G
Sbjct: 621 EKLAVAFGVLNL-NGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDG 679

Query: 689 NCSCKDNW 696
            CSC+D W
Sbjct: 680 LCSCQDFW 687



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/445 (26%), Positives = 195/445 (43%), Gaps = 118/445 (26%)

Query: 33  CTRVNDVELAKRLQSHMD-LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C  + DV  AKR+  H D + F   +   L N L+  Y K      AR +F+ MP RD+I
Sbjct: 88  CASLRDVMNAKRV--HEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVI 145

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SW ++ S                                + N G  REAL  F +M  + 
Sbjct: 146 SWTSMASC-------------------------------YVNCGLLREALGAFRKMGLNG 174

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P   T  S L AC  L DL+ G+++HG +V   +GGNVFV +AL +MYA    I +A+
Sbjct: 175 ERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQ 234

Query: 212 WLFDRMNNRNLVSWNLMISGY-----------------------------------LKNG 236
            +FD M+ R+ VSWN++I+ Y                                   ++NG
Sbjct: 235 LVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNG 294

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------FQ------ 269
           + +K +++   MQ  G  P+++T++++L AC                     FQ      
Sbjct: 295 RTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTT 354

Query: 270 --------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G ++ + R+F ++ ++D V W TMI+  + +G  E+AL+LF EM+   VRP
Sbjct: 355 ALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRP 414

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVL-------GVDDDLLVSSALIDMYCKCGVT 374
           +  + + V+S C+      H ++V    ++         V+ D    S ++D+  + G  
Sbjct: 415 NSVTFTGVLSGCS------HSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRL 468

Query: 375 DDAWTVFNMMPTRNVV-SWNSMING 398
           ++A+     MP      +W +++ G
Sbjct: 469 EEAYEFIKKMPIEPTAGAWGALLGG 493



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 178/374 (47%), Gaps = 19/374 (5%)

Query: 7   LRQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           LR+A+         G+       + ++  CT + D++  + +   +  N    N  F+ +
Sbjct: 160 LREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNV-FVSS 218

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR---- 119
            L++ YA    +  A+ +FD M  RD +SWN L++A+  +   +   ++F +M       
Sbjct: 219 ALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGL 278

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           +  S+N  I G    G + +AL+V SRMQ   F+P   T  S L AC  L  LR GKQIH
Sbjct: 279 NYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIH 338

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G I       ++    AL  MYAK G+++ +R +F  M  R+ VSWN MI     +G  +
Sbjct: 339 GYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGE 398

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTM 294
           + + LF+EM   G+ P+ VT + +L  C  +  +D+   +F  +      E D    + M
Sbjct: 399 EALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCM 458

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           +   ++ G+ E+A     +M    + P   +  +++  C    ++  G++   +   +  
Sbjct: 459 VDVLSRAGRLEEAYEFIKKM---PIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIES 515

Query: 355 DDD---LLVSSALI 365
           D+    +L+S+ L+
Sbjct: 516 DNPGNYVLLSNILV 529



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 73/392 (18%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEV 258
           +Y+  G++ +AR LFD++   +L +W ++IS   K+G+  + I  + + +    + PD++
Sbjct: 20  VYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPDKL 79

Query: 259 TVSNILGAC----------------------------------FQTGRIDDAGRL-FHVI 283
            + ++  AC                                  +   R  +  RL F  +
Sbjct: 80  LLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGM 139

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             +D + WT+M   Y   G   +AL  F +M     RP+  ++SS++ +C  L  L  G+
Sbjct: 140 PFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKSGR 199

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY---- 399
            VHG  V  G+  ++ VSSAL++MY  C     A  VF+ M  R+ VSWN +I  Y    
Sbjct: 200 EVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNK 259

Query: 400 -------------------------------AQNGQDLEALALYDKLLQENLKPDSFTFV 428
                                           QNG+  +AL +  ++     KP+  T  
Sbjct: 260 ECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITIT 319

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           SVL AC + +   RG          H     L     ++ +  +  D++ +  +  S+  
Sbjct: 320 SVLPACTNLESL-RGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVF-SMMT 377

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           K +++ W+T++   +M G+ +   +  R + +
Sbjct: 378 KRDTVSWNTMIIATSMHGNGEEALLLFREMVD 409



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 43/215 (20%)

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKP 422
            I +Y   G    A  +F+ +P  ++ +W  +I+   ++G+ LEA+  Y+    +N ++P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 423 DSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           D    +SV  AC    D+    + H D+I    G    +     +I++ G+    + A  
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIR--FGFCSDVLLGNALIDMYGKCRCSEGARL 134

Query: 482 LIKSLP----------------------------------HKPNSLIWSTLLSVCAMKGD 507
           + + +P                                   +PNS+  S++L  C    D
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD 194

Query: 508 IKHGEMAARHLFELEPINAGPYIM---LSNMYAAC 539
           +K G     H F +     G   +   L NMYA+C
Sbjct: 195 LKSGREV--HGFVVRNGMGGNVFVSSALVNMYASC 227


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 337/573 (58%), Gaps = 38/573 (6%)

Query: 161  SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
            S L  C     +R G+++H  ++       V++R  L  +Y K   +  AR + D M  R
Sbjct: 482  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 541

Query: 221  NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--- 272
            N+VSW  MISGY + G   + + LF EM + G  P+E T + +L +C     FQ GR   
Sbjct: 542  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIH 601

Query: 273  ---------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                       I +A R+F  + E+D V  T +I GY Q G +E
Sbjct: 602  SLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDE 661

Query: 306  DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
            +AL LF  +  E +R +  + +SV+++ + LA+L HG+ VH   +   +   +++ ++LI
Sbjct: 662  EALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLI 721

Query: 366  DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDS 424
            DMY KCG    +  +F+ MP R V+SWN+M+ GY+++G   EA+ L+  + +EN +KPDS
Sbjct: 722  DMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDS 781

Query: 425  FTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF++VLS C H  + +RG +  ++ ++   G  P ++HY C+++L GR+  V++A + I
Sbjct: 782  VTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFI 841

Query: 484  KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            K +P +P + IW +LL  C +  ++  GE  AR L E+E  NAG Y++LSN+YA+ GRW+
Sbjct: 842  KKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWD 901

Query: 544  DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
            DV ++R  MK K V K    SWIE+D  +H F + DR+HP  E ++ ++ +L  K++EAG
Sbjct: 902  DVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAG 961

Query: 604  FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
            + P    VL+D  +E+K K +  HSEKLALA+ LI  P G TP+RI+KN+R+C DCH F 
Sbjct: 962  YVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGG-TPVRIIKNLRICVDCHNFA 1020

Query: 664  KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KF S + GR + LRD NRFHH VGG CSC D W
Sbjct: 1021 KFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 197/434 (45%), Gaps = 71/434 (16%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +  +L++A+  +  +G     + Y  ++ +C     +   +R+ +HM    YEP   +L 
Sbjct: 457 SNRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEP-PVYLR 515

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
            RL+  Y K   L                                D R + D+MP R+ V
Sbjct: 516 TRLIVLYNKCRCL-------------------------------GDARRVLDEMPERNVV 544

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   I+G++ +G++ EAL +F  M      P ++T  + L +C      + G+QIH  +
Sbjct: 545 SWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLV 604

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +  +   ++FV ++L DMYAK G+I +AR +FD +  R++VS   +ISGY + G  ++ +
Sbjct: 605 IKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEAL 664

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
           DLF+ +Q  G+  + VT +++L A                                    
Sbjct: 665 DLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMY 724

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSI 326
            + G +  + R+F  + E+  + W  M+VGY+++G   +A+ LF  M  E+ V+PD  + 
Sbjct: 725 SKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTF 784

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
            +V+S C+       G  +  + V    G + ++     ++D++ + G  ++A+     M
Sbjct: 785 LAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM 844

Query: 385 PTRNVVS-WNSMIN 397
           P     + W S++ 
Sbjct: 845 PFEPTAAIWGSLLG 858



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 160/309 (51%), Gaps = 13/309 (4%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           I   ++LL  +A++G + + R +FD +P RD VS    I+G+A  G   EAL +F R+Q+
Sbjct: 613 IFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQR 672

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +       T+ S L A + L  L  G+Q+H  ++   L   V ++N+L DMY+K G +  
Sbjct: 673 EGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTY 732

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACF 268
           +R +FD M  R ++SWN M+ GY K+G  ++ ++LF+ M+    + PD VT   +L  C 
Sbjct: 733 SRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCS 792

Query: 269 QTGRIDDAGRLFH-VIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
             G  D    +F+ ++ +KD        +  ++  + + G+ E+A     +M  E   P 
Sbjct: 793 HGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE---PT 849

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTDDAWTVF 381
                S++ +C    +++ G+ V  +  +L ++ +   +  ++ ++Y   G  DD  TV 
Sbjct: 850 AAIWGSLLGACRVHQNVHIGEFVARR--LLEIESENAGNYVILSNLYASAGRWDDVRTVR 907

Query: 382 NMMPTRNVV 390
            +M  + V+
Sbjct: 908 ELMKEKAVI 916


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 363/639 (56%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + ++  V   R +FD+M  RD +S+N+ I G+ + G + + L VF +M     E
Sbjct: 234 NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T VS    CA    +  G+ +H   V           N L DMY+K G++D A+ +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 353

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M++R++VS+  MI+GY + G   + + LF+EM+  G++PD  TV+ +L  C +   +
Sbjct: 354 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 413

Query: 274 DDAGRLFHVIKE-----------------------------------KDNVCWTTMIVGY 298
           D+  R+   IKE                                   KD + W T+I GY
Sbjct: 414 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 473

Query: 299 TQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           ++N    +AL LFN +L E    PD+ +++ V+ +CA L++   G+ +HG  +  G   D
Sbjct: 474 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 533

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V+++L+DMY KCG    A  +F+ + ++++VSW  MI GY  +G   EA+AL++++ Q
Sbjct: 534 RHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             ++ D  +FVS+L AC H+ L + G   F+ +     I P+++HYAC++++L R+ D+ 
Sbjct: 594 AGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLI 653

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           KA   I+++P  P++ IW  LL  C +  D+K  E  A  +FELEP N G Y++++N+YA
Sbjct: 654 KAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYA 713

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
              +WE V  +R  +  + ++K    SWIEI  +V+ FV+ D ++PETE I   L K+  
Sbjct: 714 EAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRA 773

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++ E G+SP TK  L D +E EK +++C HSEKLA+A  +I   HG   IR+ KN+RVCG
Sbjct: 774 RMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG-KIIRVTKNLRVCG 832

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S +  R I+LRDSNRFH F  G+CSC+  W
Sbjct: 833 DCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 193/381 (50%), Gaps = 36/381 (9%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +   G +++   +FD++ I  ++ +N  +   A  G    ++ +F +M     E   YT 
Sbjct: 139 YTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTF 198

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
                + + L  +  G+Q+HG I+    G    V N+L   Y K   +D AR +FD M  
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTE 258

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-------------- 265
           R+++SWN +I+GY+ NG  +K + +F +M + G+  D  T+ ++                
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAV 318

Query: 266 ------ACF---------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                 ACF               + G +D A  +F  + ++  V +T+MI GY + G  
Sbjct: 319 HSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA 378

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +A+ LF EM  E + PD +++++V++ CA+   L  G+ VH       +  D+ VS+AL
Sbjct: 379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNAL 438

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPD 423
           +DMY KCG   +A  VF+ M  ++++SWN++I GY++N    EAL+L++ LL+E    PD
Sbjct: 439 MDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPD 498

Query: 424 SFTFVSVLSACLHADLFERGQ 444
             T   VL AC     F++G+
Sbjct: 499 ERTVACVLPACASLSAFDKGR 519



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 166/367 (45%), Gaps = 49/367 (13%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R     NT +  F   G    A+++     K   +P   T  S L  CA    L+ GK++
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 179 ------HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
                 +G ++  NLG      + L+ MY   G++ +A  +FD +     + WN++++  
Sbjct: 117 DNFIRGNGFVIDSNLG------SKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNEL 170

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVS----------------NILGACFQTG----- 271
            K+G     I LF++M   G+  D  T S                 + G   ++G     
Sbjct: 171 AKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERN 230

Query: 272 --------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                         R+D A ++F  + E+D + W ++I GY  NG  E  L +F +ML  
Sbjct: 231 SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS 290

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            +  D  +I SV + CA    +  G+ VH   V      +    + L+DMY KCG  D A
Sbjct: 291 GIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSA 350

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             VF  M  R+VVS+ SMI GYA+ G   EA+ L++++ +E + PD +T  +VL+ C   
Sbjct: 351 KAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARY 410

Query: 438 DLFERGQ 444
            L + G+
Sbjct: 411 RLLDEGK 417



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 39/258 (15%)

Query: 33  CTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           C R   ++  KR+   +   DL F      F+ N L+  YAK G +  A  +F +M ++D
Sbjct: 407 CARYRLLDEGKRVHEWIKENDLGF----DIFVSNALMDMYAKCGSMQEAELVFSEMRVKD 462

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS-RMQ 148
           IISW                               NT I G++   ++ EAL +F+  ++
Sbjct: 463 IISW-------------------------------NTIIGGYSKNCYANEALSLFNLLLE 491

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + RF P + T    L ACA L    +G++IHG I+      +  V N+L DMYAK G + 
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LFD + +++LVSW +MI+GY  +G  K+ I LF +M+  G+  DE++  ++L AC 
Sbjct: 552 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 611

Query: 269 QTGRIDDAGRLFHVIKEK 286
            +G +D+  R F++++ +
Sbjct: 612 HSGLVDEGWRFFNIMRHE 629



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 161/378 (42%), Gaps = 55/378 (14%)

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G + +A R+F  +K +  + W  ++    ++G    ++ LF +M+S  V  D ++ S V 
Sbjct: 143 GDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            S + L S++ G+ +HG  +  G  +   V ++L+  Y K    D A  VF+ M  R+V+
Sbjct: 203 KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 262

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ------ 444
           SWNS+INGY  NG   + L+++ ++L   ++ D  T VSV + C  + L   G+      
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 322

Query: 445 ----------------------NHFDSISAVHGITP--SLDHYACMINLLGRSSDVDKAV 480
                                    DS  AV       S+  Y  MI    R     +AV
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAV 382

Query: 481 DLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN--- 534
            L + +  +   P+    + +L+ CA    +  G+     + E    + G  I +SN   
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE---NDLGFDIFVSNALM 439

Query: 535 -MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            MYA CG  ++   + S M+ K++      SW  I     K    +          E LS
Sbjct: 440 DMYAKCGSMQEAELVFSEMRVKDI-----ISWNTIIGGYSKNCYAN----------EALS 484

Query: 594 KLIKKLQEAGFSPNTKLV 611
                L+E  FSP+ + V
Sbjct: 485 LFNLLLEEKRFSPDERTV 502



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T +  + ++G  E+A+ L       D+ P   ++ SV+  CA   SL  G+ V       
Sbjct: 66  TQLRRFCESGNLENAVKLLCVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGN 123

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   D  + S L  MY  CG   +A  VF+ +     + WN ++N  A++G    ++ L+
Sbjct: 124 GFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
            K++   ++ DS+TF  V                F S+ +VHG
Sbjct: 184 KKMMSSGVEMDSYTFSCV-------------SKSFSSLRSVHG 213


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/703 (32%), Positives = 377/703 (53%), Gaps = 79/703 (11%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +   L+    + G + +A   F ++    II  N++L  +A+S  V     +F  MP RD
Sbjct: 196 VQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERD 255

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            VS+N  I+  +  G  REAL +   M      P   T+ S+L ACA+L  L  GKQ+H 
Sbjct: 256 VVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHV 315

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +++      + +V +A+ ++YAK G   +A+ +F  + +RN VSW ++I G+L+ G   +
Sbjct: 316 QVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSE 375

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------ 270
            ++LF +M+   +  D+  ++ ++  C  T                              
Sbjct: 376 SVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLIS 435

Query: 271 -----GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ------------------------- 300
                G + +A  +F+ + E+D V WT MI  Y+Q                         
Sbjct: 436 MYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAM 495

Query: 301 ------NGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
                 +G EED L ++++ML+E DV PD  +  ++   CA + +   G  + G  V +G
Sbjct: 496 LGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVG 555

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D  V +A+I MY KCG   +A   F+ +  +++VSWN+MI GY+Q+G   +A+ ++D
Sbjct: 556 LILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFD 615

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L +  KPD  ++V+VLS C H+ L E G+ +FD +   H I+P L+H++CM++LLGR+
Sbjct: 616 DILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRA 675

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A +LI  +P KP + +W  LLS C   G+    E+AA+HLF+L+   +G Y++L+
Sbjct: 676 GHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLA 735

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            MYA  G+ +D A +R  M+ K +KK   YSW+E++N+VH F +ED +HP+   I E+L 
Sbjct: 736 KMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLD 795

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L++K+   G+              E  +S  +HSEKLA+A+ ++  P    PI IMKN+
Sbjct: 796 ELMEKIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP-AWMPIHIMKNL 843

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  +K  S +  R  ++RD  RFHHF GG+CSC D W
Sbjct: 844 RICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 147/570 (25%), Positives = 251/570 (44%), Gaps = 107/570 (18%)

Query: 20  AATEEAYTQLVLD----CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           A +  A TQ + D    C   + +  A+ L S + +N    +  FL N LLH Y   G L
Sbjct: 18  ATSHMAITQALADALRSCGARSALTGARTLHSRL-INVGLASVVFLQNTLLHAYLSCGAL 76

Query: 76  FYARDLF-DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
             AR+L  D++   ++I+ N +++ +A+ GS+ D   LF +MP RD  S+NT ++G+   
Sbjct: 77  SDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQS 136

Query: 135 GFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           G    AL +F  M Q     P  +T    + +C  L       Q+ G +   +   +  V
Sbjct: 137 GQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDV 196

Query: 194 RNALTDM-------------------------------YAKGGEIDKARWLFDRMNNRNL 222
           + AL DM                               YAK   +D A  +F  M  R++
Sbjct: 197 QTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDV 256

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSWN++IS   K+G+ ++ +D+  +M   G+ PD  T ++ L AC               
Sbjct: 257 VSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQ 316

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G   +A R+F  ++++++V WT +I G+ Q G   ++
Sbjct: 317 VIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSES 376

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + LFN+M +E +  D+F++++++S C     +  G  +H   +  G    ++VS++LI M
Sbjct: 377 VELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISM 436

Query: 368 YCKCGVTDDAWTVFNMMP-------------------------------TRNVVSWNSMI 396
           Y KCG   +A  +FN M                                TRNV++WN+M+
Sbjct: 437 YAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAML 496

Query: 397 NGYAQNGQDLEALALY-DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
             Y Q+G + + L +Y D L ++++ PD  T+V++   C      + G         V  
Sbjct: 497 GAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGL 556

Query: 456 I--TPSLDHYACMINLLGRSSDVDKAVDLI 483
           I  T  ++    M +  GR S+  KA D +
Sbjct: 557 ILDTSVVNAVITMYSKCGRISEARKAFDFL 586



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 163/320 (50%), Gaps = 10/320 (3%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  + A   L+  C    D+ L  +L S + L         + N L+  YAK G L  A 
Sbjct: 389 AVDQFALATLISGCCNTMDICLGSQLHS-LCLKSGHTRAVVVSNSLISMYAKCGNLQNAE 447

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +F+ M  RDI+SW  +++A+++ G++   R  FD M  R+ +++N  +  +   G   +
Sbjct: 448 LIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEED 507

Query: 140 ALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
            L+++S M  ++    D+ T+V+    CA +   + G QI G  V   L  +  V NA+ 
Sbjct: 508 GLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVI 567

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
            MY+K G I +AR  FD ++ ++LVSWN MI+GY ++G  K+ I++F ++   G  PD +
Sbjct: 568 TMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYI 627

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNE 313
           +   +L  C  +G +++    F ++K   N+      ++ M+    + G   +A  L +E
Sbjct: 628 SYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDE 687

Query: 314 MLSEDVRPDKFSISSVVSSC 333
           M    ++P      +++S+C
Sbjct: 688 M---PMKPTAEVWGALLSAC 704



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 159/376 (42%), Gaps = 80/376 (21%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF-DRMNNR 220
           AL +C     L   + +H +++   L   VF++N L   Y   G +  AR L  D +   
Sbjct: 31  ALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEP 90

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           N+++ N+M++GY K                                    G + DA  LF
Sbjct: 91  NVITHNIMMNGYAK-----------------------------------LGSLSDAVELF 115

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASL 339
             +  +D   W T++ GY Q+G+  +AL +F  M  + D  P+ F+   V+ SC  L   
Sbjct: 116 GRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALG-- 173

Query: 340 YHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKCGV------------------------ 373
           +H   +    ++   D  DD  V +AL+DM  +CG                         
Sbjct: 174 WHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLV 233

Query: 374 -------TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
                   D A  +F  MP R+VVSWN +I+  +++G+  EAL +   +  + ++PDS T
Sbjct: 234 GYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTT 293

Query: 427 FVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLI 483
           + S L+AC      E G Q H   I  +    P +D Y  + M+ L  +     +A  + 
Sbjct: 294 YTSSLTACARLSSLEWGKQLHVQVIRNL----PHIDPYVASAMVELYAKCGCFKEAKRVF 349

Query: 484 KSLPHKPNSLIWSTLL 499
            SL  + NS+ W+ L+
Sbjct: 350 SSLRDR-NSVSWTVLI 364



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 117/272 (43%), Gaps = 72/272 (26%)

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            + +++  + +++ Y K G   DA  +F  MPTR+V SWN++++GY Q+GQ L AL ++ 
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 414 KLLQE-NLKPDSFTF--------------------------------------VSVLSAC 434
            + Q  +  P++FTF                                      V +L  C
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 435 LHADL----FERGQN--------HFDSISAVHGITPSLDHYACM-----------INLLG 471
              D     F R +N             +  HG+  +L+ +  M           I+ L 
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 472 RSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEM----AARHLFELEPI 524
           +S  V +A+D++  +  K   P+S  +++ L+ CA    ++ G+       R+L  ++P 
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPY 327

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            A   +    +YA CG +++   + SS++ +N
Sbjct: 328 VASAMV---ELYAKCGCFKEAKRVFSSLRDRN 356


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/639 (35%), Positives = 363/639 (56%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + ++  V   R +FD+M  RD +S+N+ I G+ + G + + L VF +M     E
Sbjct: 83  NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T VS    CA    +  G+ +H   V           N L DMY+K G++D A+ +
Sbjct: 143 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 202

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M++R++VS+  MI+GY + G   + + LF+EM+  G++PD  TV+ +L  C +   +
Sbjct: 203 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 262

Query: 274 DDAGRLFHVIKE-----------------------------------KDNVCWTTMIVGY 298
           D+  R+   IKE                                   KD + W T+I GY
Sbjct: 263 DEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGY 322

Query: 299 TQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           ++N    +AL LFN +L E    PD+ +++ V+ +CA L++   G+ +HG  +  G   D
Sbjct: 323 SKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 382

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V+++L+DMY KCG    A  +F+ + ++++VSW  MI GY  +G   EA+AL++++ Q
Sbjct: 383 RHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 442

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             ++ D  +FVS+L AC H+ L + G   F+ +     I P+++HYAC++++L R+ D+ 
Sbjct: 443 AGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLI 502

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           KA   I+++P  P++ IW  LL  C +  D+K  E  A  +FELEP N G Y++++N+YA
Sbjct: 503 KAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYA 562

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
              +WE V  +R  +  + ++K    SWIEI  +V+ FV+ D ++PETE I   L K+  
Sbjct: 563 EAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRA 622

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++ E G+SP TK  L D +E EK +++C HSEKLA+A  +I   HG   IR+ KN+RVCG
Sbjct: 623 RMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG-KIIRVTKNLRVCG 681

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S +  R I+LRDSNRFH F  G+CSC+  W
Sbjct: 682 DCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 111/368 (30%), Positives = 187/368 (50%), Gaps = 36/368 (9%)

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           FD++ I  ++ +N  +   A  G    ++ +F +M     E   YT      + + L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
             G+Q+HG I+    G    V N+L   Y K   +D AR +FD M  R+++SWN +I+GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG--------------------ACF---- 268
           + NG  +K + +F +M + G+  D  T+ ++                      ACF    
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 269 -----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                      + G +D A  +F  + ++  V +T+MI GY + G   +A+ LF EM  E
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + PD +++++V++ CA+   L  G+ VH       +  D+ VS+AL+DMY KCG   +A
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 300

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLH 436
             VF+ M  ++++SWN++I GY++N    EAL+L++ LL+E    PD  T   VL AC  
Sbjct: 301 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACAS 360

Query: 437 ADLFERGQ 444
              F++G+
Sbjct: 361 LSAFDKGR 368



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 132/258 (51%), Gaps = 39/258 (15%)

Query: 33  CTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           C R   ++  KR+   +   DL F      F+ N L+  YAK G +  A  +F +M ++D
Sbjct: 256 CARYRLLDEGKRVHEWIKENDLGF----DIFVSNALMDMYAKCGSMQEAELVFSEMRVKD 311

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS-RMQ 148
           IISW                               NT I G++   ++ EAL +F+  ++
Sbjct: 312 IISW-------------------------------NTIIGGYSKNCYANEALSLFNLLLE 340

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + RF P + T    L ACA L    +G++IHG I+      +  V N+L DMYAK G + 
Sbjct: 341 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 400

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LFD + +++LVSW +MI+GY  +G  K+ I LF +M+  G+  DE++  ++L AC 
Sbjct: 401 LAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACS 460

Query: 269 QTGRIDDAGRLFHVIKEK 286
            +G +D+  R F++++ +
Sbjct: 461 HSGLVDEGWRFFNIMRHE 478



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 155/369 (42%), Gaps = 55/369 (14%)

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +K +  + W  ++    ++G    ++ LF +M+S  V  D ++ S V  S + L S+
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
           + G+ +HG  +  G  +   V ++L+  Y K    D A  VF+ M  R+V+SWNS+INGY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ--------------- 444
             NG   + L+++ ++L   ++ D  T VSV + C  + L   G+               
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 445 -------------NHFDSISAVHGITP--SLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
                           DS  AV       S+  Y  MI    R     +AV L + +  +
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 490 ---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRW 542
              P+    + +L+ CA    +  G+     + E    + G  I +SN    MYA CG  
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKE---NDLGFDIFVSNALMDMYAKCGSM 297

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           ++   + S M+ K++      SW  I     K    +          E LS     L+E 
Sbjct: 298 QEAELVFSEMRVKDI-----ISWNTIIGGYSKNCYAN----------EALSLFNLLLEEK 342

Query: 603 GFSPNTKLV 611
            FSP+ + V
Sbjct: 343 RFSPDERTV 351


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 356/610 (58%), Gaps = 32/610 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NAL+ A+ +   V+  R +FD + +RD VS+ +  + +   GF R+ + VF  
Sbjct: 110 MSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFRE 169

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M     +P   T  S L ACA+L DL+ GK+IHG  V   +  N+FV +AL  +YAK   
Sbjct: 170 MGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLS 229

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + +AR +FD M +R++VSWN +++ Y KN + +K   LF +M   G+  DE T       
Sbjct: 230 VREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT------- 282

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                                   W  +I G  +NG+ E+A+ +F +M     +P++ +I
Sbjct: 283 ------------------------WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITI 318

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           SS++ +C+   +L  G+ +H          DL  ++AL+ MY KCG  + +  VF+MM  
Sbjct: 319 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 378

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           ++VV+WN+MI   A +G   EAL L+DK+L   ++P+S TF  VLS C H+ L E G   
Sbjct: 379 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 438

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F+S+   H + P  +HY+C++++  R+  +++A   I+ +P +P +  W  LL+ C +  
Sbjct: 439 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 498

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           +++  +++A+ LFE+EP N G Y+ L N+      W + + +R  MK + + K    SW+
Sbjct: 499 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY 626
           ++ NKVH FV  D+++ E++ IY  L +L++K++ AG+ P+T  VL D  +EEK +S+C 
Sbjct: 559 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCN 618

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLA+A+ ++   +G + IR+ KN+R+CGDCH  +K+ S ++G  I++RDS RFHHF 
Sbjct: 619 HSEKLAVAFGILNL-NGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFK 677

Query: 687 GGNCSCKDNW 696
            GNCSCKD W
Sbjct: 678 NGNCSCKDLW 687



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 173/338 (51%), Gaps = 16/338 (4%)

Query: 8   RQAIDTLYSRGQAATEE---AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R+ +D     G +  +      + ++  C  + D++  K +      +    N  F+ + 
Sbjct: 161 RKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL-FVCSA 219

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP---IR-D 120
           L+  YAK   +  AR +FD MP RD++SWN +L+A+ ++   +   +LF KM    +R D
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++N  I G    G S EA+++F +MQK  F+P + T  S L AC+   +LR GK+IH 
Sbjct: 280 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 339

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +      G++    AL  MYAK G+++ +R +FD M  +++V+WN MI     +G  K+
Sbjct: 340 YVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKE 399

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMI 295
            + LF +M L  + P+ VT + +L  C  +  +++  ++F+ +      E D   ++ ++
Sbjct: 400 ALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVV 459

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             Y++ G+  +A      M  E   P   +  +++++C
Sbjct: 460 DIYSRAGRLNEAYKFIQGMPME---PTASAWGALLAAC 494



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 178/405 (43%), Gaps = 72/405 (17%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G+ ++AR LFD +   +  + + +IS    +G   + I ++  +Q  G+ PD        
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 265 GACFQTGR-----------------------------------IDDAGRLFHVIKEKDNV 289
            AC  +G                                    ++ A R+F  +  +D V
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT++   Y + G     + +F EM    V+P+  ++SS++ +CA+L  L  G+ +HG A
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 205

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V  G+  +L V SAL+ +Y KC    +A  VF++MP R+VVSWN ++  Y +N +  +  
Sbjct: 206 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 265

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           +L+ K+ ++ ++ D  T+ +V+  C+                                  
Sbjct: 266 SLFLKMSRDGVRADEATWNAVIGGCMEN-------------------------------- 293

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGP 528
            GRS +  +    ++ +  KPN +  S++L  C+   +++ G+    ++F    + +   
Sbjct: 294 -GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTS 352

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
              L  MYA CG      ++   M+ K+V    A++ + I N +H
Sbjct: 353 TTALLYMYAKCGDLNLSRNVFDMMRRKDV---VAWNTMIIANAMH 394



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 2/238 (0%)

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++      G  + A +LF  I + D    +T+I   T +G   +A+ +++ +    ++PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                +   +CA        + VH  A   GV  D+ V +ALI  Y KC   + A  VF+
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            +  R+VVSW S+ + Y + G   + + ++ ++    +KP+  T  S+L AC      + 
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 197

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G+      +  HG+  +L   + +++L  +   V +A  +   +PH+ + + W+ +L+
Sbjct: 198 GK-EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLT 253


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/580 (38%), Positives = 344/580 (59%), Gaps = 8/580 (1%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNACAQL 169
           + D  P R +V +N  + G       R+AL +F+ M+       P  YT+  AL +CA  
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             L  G+QIH       L GNVFV ++   MYA+ G  D A  +F+ M  R++VSWN MI
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--- 285
           SG+   G   + +D+F+E+  L    PD  T+++IL +     R++D   L  V  E   
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS-MGKARVEDIALLKGVFDEMRF 254

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           K  + W  M+  YT N    +A+ LF  M  + + PD  ++++V+ SC ++++L  G+ +
Sbjct: 255 KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRI 314

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H       +   +L+ +AL+DMY  CG   +A  VF+ M TR+VVSW S+I+ Y ++G  
Sbjct: 315 HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 374

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EA+ L++K+  + L+PDS  FV++L+AC HA L + G+++F S+++   I P L+HYAC
Sbjct: 375 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 434

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           M++LLGR+  + +A D I  +P KPN  +W  LL  C +  ++  G +AA  L  L P  
Sbjct: 435 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 494

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA  GRW DV+ +RS M+SK +KK    S  E+ ++VH F   D +HP++
Sbjct: 495 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQS 554

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           ++IY++LS+L+++++E G++P  +  LHD +EE+K   +  HSEKLA+A+ LI    G T
Sbjct: 555 KMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPG-T 613

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           PIRI  N+R C DCH   K  S I GR IIL+D NR H+ 
Sbjct: 614 PIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYM 653



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 151/309 (48%), Gaps = 41/309 (13%)

Query: 13  TLYSRGQAATEEAYT-QLVL-DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           ++  +G A   + YT  L L  C   + + L +++ S       + N  F+ +  +  YA
Sbjct: 110 SMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNV-FVAHSAISMYA 168

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSG-------------------------- 104
           + G+   A  +F++M  RD++SWNA++S  A +G                          
Sbjct: 169 RCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMA 228

Query: 105 ---------SVQD---LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
                     V+D   L+ +FD+M  +  +S+N  +A + N     EA+++F RMQKD  
Sbjct: 229 SILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGI 288

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           EP   T  + L +C ++  L  GK+IH  I    +  ++ + NAL DMYA  G + +AR 
Sbjct: 289 EPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARD 348

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD M  R++VSW  +IS Y ++G  ++ IDLF++M   GL PD +    IL AC   G 
Sbjct: 349 VFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGL 408

Query: 273 IDDAGRLFH 281
           +D     F+
Sbjct: 409 LDMGKHYFY 417



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 73/382 (19%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++   ++ +S +AR G   D   +F++M  RD VS+N  I+GFA+ G    A+ VF  + 
Sbjct: 156 NVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV 215

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             +    D   +++                    ++ ++G             A+  +I 
Sbjct: 216 ALQCPKPDAGTMAS--------------------ILPSMGK------------ARVEDIA 243

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
             + +FD M  + L+SWN M++ Y  N    + ++LF  MQ  G+ PD VT++ +L +C 
Sbjct: 244 LLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCG 303

Query: 269 QTGRIDDAGRLFHVIKE-----------------------------------KDNVCWTT 293
           +   +    R+  VIK                                    +D V WT+
Sbjct: 304 EVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTS 363

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVVL 352
           +I  Y ++G   +A+ LF +M  + + PD  +  +++++C+    L  G+   +      
Sbjct: 364 IISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEF 423

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALA 410
            +   L   + ++D+  + G   +A+    +MP + N   W +++      +  D+  LA
Sbjct: 424 HIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLA 483

Query: 411 LYDKLLQENLKPDSFTFVSVLS 432
             D LL+  L P    +  +LS
Sbjct: 484 A-DSLLR--LAPKQTGYYVLLS 502


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/641 (35%), Positives = 363/641 (56%), Gaps = 38/641 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R G +     +F  MP++D  S+N  I+GF   G +  AL V +RM+
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +    T  S L  CAQ  D+  G  IH  ++   L  +VFV NAL +MY+K G + 
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV-------- 260
            A+ +FD+M  R+LVSWN +I+ Y +N  P   +  F+ MQL G+ PD +TV        
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 261 --------SNILGACF--------------------QTGRIDDAGRLFHVIKEKDNVCWT 292
                    +ILG                       + G ++ A  +F  +  KD + W 
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 293 TMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T++ GYTQNG   +A+  +N M    D  P++ +  S++ + + + +L  G  +H K + 
Sbjct: 395 TLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK 454

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ V++ LID+Y KCG  +DA ++F  +P    V WN++I     +G+  EAL L
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  +L E +K D  TFVS+LSAC H+ L + GQ  FD +   +GI PSL HY CM++LLG
Sbjct: 515 FKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLG 574

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++KA +L++++P +P++ IW  LLS C + G+ + G +A+  L E++  N G Y++
Sbjct: 575 RAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVL 634

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA   +WE V  +RS  + + ++K   +S + + +K   F + ++THP+   IY+E
Sbjct: 635 LSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKE 694

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   V  D +E+EK + +  HSE+LA+A+ +I  P   +PIRI K
Sbjct: 695 LKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPR-SPIRIFK 753

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           N+RVCGDCH   K+ S I  R I++RDSNRFHHF  G CSC
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 237/521 (45%), Gaps = 79/521 (15%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +  L   C  VN     K+L + + L F +     L  +L++ Y   G +  +R  FD +
Sbjct: 25  FNALFNSCVNVNA---TKKLHALL-LVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYI 80

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             ++I SWN+++SA+ R G   +     +                           Q+FS
Sbjct: 81  HKKNIFSWNSIISAYVRFGKYHEAMNCVN---------------------------QLFS 113

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
                   P  YT    L AC  L+D   GK++H  +       +VFV  +L  +Y++ G
Sbjct: 114 MCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A  +F  M  +++ SWN MISG+ +NG     + +   M+  G+  D +TV++IL 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 266 ACFQT-----------------------------------GRIDDAGRLFHVIKEKDNVC 290
            C Q+                                   GR+ DA  +F  ++ +D V 
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W ++I  Y QN     AL  F  M    +RPD  ++ S+ S  ++L+     + + G  +
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 351 VLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
               +D D+++ +AL++MY K G  + A TVF+ +P ++ +SWN+++ GY QNG   EA+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410

Query: 410 ALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY--AC 465
             Y+ + +  +  P+  T+VS++ A  H    ++G   H   I      +  LD +   C
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN----SLYLDVFVATC 466

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +I+L G+   ++ A+ L   +P +  S+ W+ +++   + G
Sbjct: 467 LIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHG 506



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 136/252 (53%), Gaps = 9/252 (3%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D++  NAL++ +A+ G +     +FD++P +D++S+NT + G+   G + EA+  ++ M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 148 QKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           ++ R   P   T VS + A + +  L++G +IH K++  +L  +VFV   L D+Y K G 
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGR 476

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A  LF  +     V WN +I+    +G+ ++ + LF++M    +  D +T  ++L A
Sbjct: 477 LEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           C  +G +D+  + F +++++  +      +  M+    + G  E A  L   M    ++P
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNM---PIQP 593

Query: 322 DKFSISSVVSSC 333
           D     +++S+C
Sbjct: 594 DASIWGALLSAC 605


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 356/610 (58%), Gaps = 32/610 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NAL+ A+ +   V+  R +FD + +RD VS+ +  + +   GF R+ + VF  
Sbjct: 196 MSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFRE 255

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M     +P   T  S L ACA+L DL+ GK+IHG  V   +  N+FV +AL  +YAK   
Sbjct: 256 MGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLS 315

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + +AR +FD M +R++VSWN +++ Y KN + +K   LF +M   G+  DE T       
Sbjct: 316 VREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEAT------- 368

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                                   W  +I G  +NG+ E+A+ +F +M     +P++ +I
Sbjct: 369 ------------------------WNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITI 404

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           SS++ +C+   +L  G+ +H          DL  ++AL+ MY KCG  + +  VF+MM  
Sbjct: 405 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 464

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           ++VV+WN+MI   A +G   EAL L+DK+L   ++P+S TF  VLS C H+ L E G   
Sbjct: 465 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 524

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F+S+   H + P  +HY+C++++  R+  +++A   I+ +P +P +  W  LL+ C +  
Sbjct: 525 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 584

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           +++  +++A+ LFE+EP N G Y+ L N+      W + + +R  MK + + K    SW+
Sbjct: 585 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 644

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY 626
           ++ NKVH FV  D+++ E++ IY  L +L++K++ AG+ P+T  VL D  +EEK +S+C 
Sbjct: 645 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCN 704

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLA+A+ ++   +G + IR+ KN+R+CGDCH  +K+ S ++G  I++RDS RFHHF 
Sbjct: 705 HSEKLAVAFGILNL-NGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFK 763

Query: 687 GGNCSCKDNW 696
            GNCSCKD W
Sbjct: 764 NGNCSCKDLW 773



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 174/339 (51%), Gaps = 18/339 (5%)

Query: 8   RQAIDTLYSRGQAATEE---AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R+ +D     G +  +      + ++  C  + D++  K +      +    N  F+ + 
Sbjct: 247 RKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNL-FVCSA 305

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP---IR-D 120
           L+  YAK   +  AR +FD MP RD++SWN +L+A+ ++   +   +LF KM    +R D
Sbjct: 306 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 365

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++N  I G    G S EA+++F +MQK  F+P + T  S L AC+   +LR GK+IH 
Sbjct: 366 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 425

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +      G++    AL  MYAK G+++ +R +FD M  +++V+WN MI     +G  K+
Sbjct: 426 YVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKE 485

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF------HVIKEKDNVCWTTM 294
            + LF +M L  + P+ VT + +L  C  +  +++  ++F      H++ E D   ++ +
Sbjct: 486 ALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLV-EPDANHYSCV 544

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           +  Y++ G+  +A      M  E   P   +  +++++C
Sbjct: 545 VDIYSRAGRLNEAYKFIQGMPME---PTASAWGALLAAC 580



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 178/405 (43%), Gaps = 72/405 (17%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G+ ++AR LFD +   +  + + +IS    +G   + I ++  +Q  G+ PD        
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 265 GACFQTGR-----------------------------------IDDAGRLFHVIKEKDNV 289
            AC  +G                                    ++ A R+F  +  +D V
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT++   Y + G     + +F EM    V+P+  ++SS++ +CA+L  L  G+ +HG A
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFA 291

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V  G+  +L V SAL+ +Y KC    +A  VF++MP R+VVSWN ++  Y +N +  +  
Sbjct: 292 VRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGF 351

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           +L+ K+ ++ ++ D  T+ +V+  C+                                  
Sbjct: 352 SLFLKMSRDGVRADEATWNAVIGGCMEN-------------------------------- 379

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGP 528
            GRS +  +    ++ +  KPN +  S++L  C+   +++ G+    ++F    + +   
Sbjct: 380 -GRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTS 438

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
              L  MYA CG      ++   M+ K+V    A++ + I N +H
Sbjct: 439 TTALLYMYAKCGDLNLSRNVFDMMRRKDV---VAWNTMIIANAMH 480



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 113/238 (47%), Gaps = 2/238 (0%)

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++      G  + A +LF  I + D    +T+I   T +G   +A+ +++ +    ++PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                +   +CA        + VH  A   GV  D+ V +ALI  Y KC   + A  VF+
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            +  R+VVSW S+ + Y + G   + + ++ ++    +KP+  T  S+L AC      + 
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKS 283

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G+      +  HG+  +L   + +++L  +   V +A  +   +PH+ + + W+ +L+
Sbjct: 284 GK-EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHR-DVVSWNGVLT 339


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/649 (36%), Positives = 357/649 (55%), Gaps = 73/649 (11%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ NRL+  Y K G L YAR +FD+M  R++ S+N+++S   R G V +   LF  MP 
Sbjct: 59  VFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPE 118

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D  S+N+ IAGFA      EAL  F RM +D F   DY+  S L+AC++L DL+ G QI
Sbjct: 119 KDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQI 178

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG I       +VF+ + L D Y+K G +  AR +FD M  +N+VSWN +I+ Y +NG  
Sbjct: 179 HGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPA 238

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------- 267
            + ++ F  M  LG  PDEVT+++++ AC                               
Sbjct: 239 IEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNA 298

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTM---------------------------- 294
                 + GR+++A  +F  +  ++ V  TTM                            
Sbjct: 299 LVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSW 358

Query: 295 ---IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ------VV 345
              I GYTQNG+ E+AL LF  +  E V P  ++  +++++ A LA L  G+      V 
Sbjct: 359 NALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVK 418

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG     G + D+ V ++LIDMY KCG  ++   VF  M  ++ VSWN+MI GYAQNG  
Sbjct: 419 HGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYG 478

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
           +EAL L+ K+L+   KPD  T +  L AC HA L E G+ +F S++  HG+ P  DHY C
Sbjct: 479 MEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTC 538

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           M++LLGR+  +++A DLI+S+P +P++++WS+LLS C +  +I  G+  A  +FE++P +
Sbjct: 539 MVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTS 598

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           +GPY++L+NMY+  GRW D  S+R  M+ + V K    SWI+I + VH F+ +D+ HP+ 
Sbjct: 599 SGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVHVFMVKDKRHPQK 658

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           + IY  L  L K +++AG+ P+        +  E   S C+H E  A A
Sbjct: 659 KEIYSILKLLTKHMRQAGYVPDASDHEAYEEPSELESSSCFHMEMQAEA 707



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 116/349 (33%), Positives = 182/349 (52%), Gaps = 23/349 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   L N L+  YAK G++  AR +FD+MP+R+ +S   ++S +A+S SV+  R++F  +
Sbjct: 291 NDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFATI 350

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
             +D VS+N  IAG+   G + EAL +F  ++++   PT YT  + LNA A L DL  G+
Sbjct: 351 KQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGR 410

Query: 177 QIHGKIVVGNL------GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           Q H  +V            ++FV N+L DMY K G +++   +F+ M  ++ VSWN MI 
Sbjct: 411 QAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMII 470

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY +NG   + ++LFQ+M   G  PD VT+   L AC   G +++  R F  + ++  + 
Sbjct: 471 GYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLL 530

Query: 291 -----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                +T M+    + G  E+A  L   M  +   PD    SS++S+C       H  + 
Sbjct: 531 PVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQ---PDAVVWSSLLSACK-----VHRNIT 582

Query: 346 HGKAVVLGVDDDLLVSSA----LIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            GK V   + +    SS     L +MY + G   DA +V  +M  R VV
Sbjct: 583 LGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVV 631



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 172/357 (48%), Gaps = 40/357 (11%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L+ C +L   R  + +HG+++       VF++N L D+Y K G +D AR +FDRM+ RN+
Sbjct: 31  LDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNV 90

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
            S+N +IS  ++                                    G +D++  LF +
Sbjct: 91  FSFNSIISTLMR-----------------------------------WGFVDESAWLFSL 115

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + EKD   W +MI G+ Q+ + E+AL  F  M  +D   + +S  S +S+C++L  L  G
Sbjct: 116 MPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLG 175

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             +HG         D+ + S LID Y KCG+   A  VF+ M  +NVVSWN +I  Y QN
Sbjct: 176 AQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQN 235

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G  +EAL  + ++ +   KPD  T  SV+SAC     F+ G      +         L  
Sbjct: 236 GPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLIL 295

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
              ++++  +   V++A  +   +P + N++  +T++S  A    +K    AAR +F
Sbjct: 296 GNALVDMYAKCGRVNEARCVFDRMPVR-NAVSETTMVSGYAKSASVK----AARSMF 347



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 116/301 (38%), Gaps = 66/301 (21%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D    + ++  C KL S    + VHG+ +     +++ + + LID+Y KCG  D A  VF
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 382 NMMPTRNV-------------------------------VSWNSMINGYAQNGQDLEALA 410
           + M  RNV                                SWNSMI G+AQ+ +  EAL 
Sbjct: 83  DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA------VHGITPSLDHYA 464
            + ++ +++   + ++F S LSAC      + G      IS       V   +  +D Y+
Sbjct: 143 WFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYS 202

Query: 465 ------------------------CMINLL---GRSSDVDKAVDLIKSLPHKPNSLIWST 497
                                   C+I      G + +  +A   +  L  KP+ +  ++
Sbjct: 203 KCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLAS 262

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSK 555
           ++S CA     K G      + + +       +   L +MYA CGR  +   +   M  +
Sbjct: 263 VVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVR 322

Query: 556 N 556
           N
Sbjct: 323 N 323


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/646 (35%), Positives = 363/646 (56%), Gaps = 40/646 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL+  ++  GS+   R LFDK+  +D VS++T I  +   G   EAL +   M 
Sbjct: 158 DVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMH 217

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG--NVFVRNALTDMYAKGGE 206
             R +P++   +S  +  A+L DL+ GK +H  ++     G   V +  AL DMY K   
Sbjct: 218 VMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCEN 277

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  AR +FD ++  +++SW  MI+ Y+      + + LF +M   G+ P+E+T+ +++  
Sbjct: 278 LAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE 337

Query: 267 CFQTGRIDDAGRLFHVI------------------------------------KEKDNVC 290
           C   G ++  G+L H                                      K KD + 
Sbjct: 338 CGTAGALE-LGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMM 396

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+ MI  Y QN   ++A  +F  M    +RP++ ++ S++  CAK  SL  G+ +H    
Sbjct: 397 WSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYID 456

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G+  D+++ ++ +DMY  CG  D A  +F     R++  WN+MI+G+A +G    AL 
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALE 516

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L++++    + P+  TF+  L AC H+ L + G+  F  +    G TP ++HY CM++LL
Sbjct: 517 LFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLL 576

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +D+A +LIKS+P +PN  ++ + L+ C +  +IK GE AA+    LEP  +G  +
Sbjct: 577 GRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHKSGYNV 636

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           ++SN+YA+  RW DVA IR +MK + + K    S IE++  +H+F+  DR HP+ + +YE
Sbjct: 637 LMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDAKKVYE 696

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            + ++ +KL++AG++P+   VLH+  +E+KV ++ YHSEKLA+AY LI    GV PIRI+
Sbjct: 697 MIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGV-PIRIV 755

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   K  S I GR II+RD NRFHHF  G+CSC D W
Sbjct: 756 KNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 216/451 (47%), Gaps = 47/451 (10%)

Query: 120 DSVSYNTAIAGFANKGFSR-----EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           +S S N AI  F    + +     +A ++++ M+    E  ++   S L AC  +     
Sbjct: 83  ESYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLL 142

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G+++HG +V     G+VFV NAL  MY++ G +  AR LFD++ N+++VSW+ MI  Y +
Sbjct: 143 GQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDR 202

Query: 235 NGQPKKCIDLFQEMQLLGLNPDE---VTVSNIL-------------------GACFQTG- 271
           +G   + +DL ++M ++ + P E   ++++++L                   G C ++G 
Sbjct: 203 SGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGV 262

Query: 272 --------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                          +  A R+F  + +   + WT MI  Y       + + LF +ML E
Sbjct: 263 PLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGE 322

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + P++ ++ S+V  C    +L  G+++H   +  G    L++++A IDMY KCG    A
Sbjct: 323 GMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSA 382

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
            +VF+   +++++ W++MI+ YAQN    EA  ++  +    ++P+  T VS+L  C  A
Sbjct: 383 RSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKA 442

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
              E G+     I    GI   +      +++     D+D A  L      +  S+ W+ 
Sbjct: 443 GSLEMGKWIHSYIDK-QGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISM-WNA 500

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           ++S  AM G   HGE A     E+E +   P
Sbjct: 501 MISGFAMHG---HGEAALELFEEMEALGVTP 528



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 111/209 (53%), Gaps = 1/209 (0%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GKL +A  L +   L  +++  A +  + + G V+  R++FD    +D + ++  I+ +A
Sbjct: 347 GKLLHAFTLRNGFTLSLVLA-TAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYA 405

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                 EA  +F  M      P + T VS L  CA+   L  GK IH  I    + G++ 
Sbjct: 406 QNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMI 465

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           ++ +  DMYA  G+ID A  LF    +R++  WN MISG+  +G  +  ++LF+EM+ LG
Sbjct: 466 LKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALG 525

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFH 281
           + P+++T    L AC  +G + +  RLFH
Sbjct: 526 VTPNDITFIGALHACSHSGLLQEGKRLFH 554



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 99/221 (44%), Gaps = 16/221 (7%)

Query: 65  LLHFYAKSGKLFYAR---DLFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LL   AK+G L   +      DK  ++ D+I   + +  +A  G +     LF +   RD
Sbjct: 435 LLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRD 494

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
              +N  I+GFA  G    AL++F  M+     P D T + AL+AC+    L+ GK++  
Sbjct: 495 ISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFH 554

Query: 181 KIVVGNLGGNVFVRN--ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           K+ V   G    V +   + D+  + G +D+A  L   M  R  ++   +   +L   + 
Sbjct: 555 KM-VHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIA---VFGSFLAACKL 610

Query: 239 KKCIDL--FQEMQLLGLNPDE----VTVSNILGACFQTGRI 273
            K I L  +   Q L L P +    V +SNI  +  + G +
Sbjct: 611 HKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDV 651


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/723 (32%), Positives = 384/723 (53%), Gaps = 70/723 (9%)

Query: 11  IDTLYSRGQAATE-EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           +  L+  G   ++ +    L+    R  ++   K+L + +      PNT FL N  L+ Y
Sbjct: 62  LKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNT-FLSNHFLNLY 120

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           +K G+L Y                                  LFDKM  R+ VS+ + I 
Sbjct: 121 SKCGELDYTI-------------------------------KLFDKMSQRNMVSWTSIIT 149

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           GFA+    +EAL  F +M+ +    T +   S L AC  L  ++ G Q+H  +V    G 
Sbjct: 150 GFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFGC 209

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
            +FV + LTDMY+K GE+  A   F+ M  ++ V W  MI G++KNG  KK +  + +M 
Sbjct: 210 ELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMV 269

Query: 250 LLGLNPDEVTVSNILGACF-----------------------------------QTGRID 274
              +  D+  + + L AC                                    ++G + 
Sbjct: 270 TDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMV 329

Query: 275 DAGRLFHVIKEKDNVCWTTMIV-GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            A  +F +  +  ++   T I+ GY +  + E AL  F ++    + P++F+ +S++ +C
Sbjct: 330 SASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKAC 389

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A  A L HG  +HG+ V      D  VSS L+DMY KCG+ D +  +F+ +   + ++WN
Sbjct: 390 ANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWN 449

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +++  ++Q+G    A+  ++ ++   LKP++ TFV++L  C HA + E G N+F S+  +
Sbjct: 450 TLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKI 509

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +G+ P  +HY+C+I+LLGR+  + +A D I ++P +PN   W + L  C + GD++  + 
Sbjct: 510 YGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKF 569

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  L +LEP N+G +++LSN+YA   +WEDV S+R  +K  N+ K   YSW++I NK H
Sbjct: 570 AADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTH 629

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F  ED +HP+ + IYE+L  L+ +++  G+ P T+ VL D  +  K K + YHSE++A+
Sbjct: 630 VFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHSERIAV 689

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ L+  P G+ PI + KN+RVC DCH  +KF S +  R II+RD +RFHHF  G+CSC 
Sbjct: 690 AFSLLTCPTGM-PIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGSCSCG 748

Query: 694 DNW 696
           D W
Sbjct: 749 DYW 751


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/622 (35%), Positives = 347/622 (55%), Gaps = 40/622 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LF      +   YN+ I GF N     E L +F  ++K       +T    L AC +   
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
            + G  +H  +V      +V    +L  +Y+  G ++ A  LFD + +R++V+W  + SG
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSG 186

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---------------- 275
           Y  +G+ ++ IDLF++M  +G+ PD   +  +L AC   G +D                 
Sbjct: 187 YTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKN 246

Query: 276 -------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                              A  +F  + EKD V W+TMI GY  N   ++ + LF +ML 
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQ 306

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKCGVT 374
           E+++PD+FSI   +SSCA L +L  G+   G +++   +   +L +++ALIDMY KCG  
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGE--WGISLIDRHEFLTNLFMANALIDMYAKCGAM 364

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
              + VF  M  +++V  N+ I+G A+NG    + A++ +  +  + PD  TF+ +L  C
Sbjct: 365 ARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGC 424

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
           +HA L + G   F++IS V+ +  +++HY CM++L GR+  +D A  LI  +P +PN+++
Sbjct: 425 VHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIV 484

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LLS C +  D +  E   + L  LEP NAG Y+ LSN+Y+  GRW++ A +R  M  
Sbjct: 485 WGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNK 544

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           K +KK   YSWIE++ KVH+F+++D++HP ++ IY +L  L  +++  GF P T+ V  D
Sbjct: 545 KGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFD 604

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
            +EEEK + + YHSEKLA+A  LI   HG   IR++KN+RVCGDCH  MK  S I  R I
Sbjct: 605 VEEEEKERVLGYHSEKLAVALGLISTDHG-QVIRVVKNLRVCGDCHEVMKLISKITRREI 663

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           ++RD+NRFH F  G+CSC D W
Sbjct: 664 VVRDNNRFHCFTNGSCSCNDYW 685



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 163/347 (46%), Gaps = 37/347 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +  +LLS ++ SG + D   LFD++P R  V++    +G+   G  REA+ +F +M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P  Y  V  L+AC  + DL  G+ I   +    +  N FVR  L ++YAK G+++
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR +FD M  +++V+W+ MI GY  N  PK+ I+LF +M    L PD+ ++   L +C 
Sbjct: 265 KARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 269 QTGRID-----------------------------------DAGRLFHVIKEKDNVCWTT 293
             G +D                                       +F  +KEKD V    
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
            I G  +NG  + +  +F +     + PD  +   ++  C     +  G +  +  + V 
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            +   +     ++D++ + G+ DDA+ +   MP R N + W ++++G
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 34/218 (15%)

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           T  ++ +F+     N+  +NS+ING+  N    E L L+  + +  L    FTF  VL A
Sbjct: 61  TKYSYLLFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKA 120

Query: 434 C-----------LHADLFERGQNH----FDSISAVHGITPSLDH---------------Y 463
           C           LH+ + + G NH      S+ +++  +  L+                +
Sbjct: 121 CTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTW 180

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
             + +    S    +A+DL K +     KP+S     +LS C   GD+  GE   +++ E
Sbjct: 181 TALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEE 240

Query: 521 LE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           +E   N+     L N+YA CG+ E   S+  SM  K++
Sbjct: 241 MEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDI 278


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 267/726 (36%), Positives = 390/726 (53%), Gaps = 67/726 (9%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA--KSGKLFYARD 80
           +  Y  L+  C  +N  +    L     LN    NT F+ ++L+HF A   SG L YA  
Sbjct: 28  QHPYLNLLEKCKNINTFKQIHSLIIKTGLN----NTVFVQSKLIHFCAVSPSGDLSYALS 83

Query: 81  LFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           LF++       ++  WN+L+  ++ S S      LF +M +   V  N+    F  K  +
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRM-LYYGVQPNSHTFPFLFKSCT 142

Query: 138 R-----EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           +     E  Q+ +   K       + H S ++  A + ++   + +  K  +     +  
Sbjct: 143 KAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSL----RDAV 198

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
              AL   Y   G +D AR LFD +  +++VSWN MISGY+++G+ ++ I  F EMQ   
Sbjct: 199 SFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEAN 258

Query: 253 LNPDEVTVSNILGACFQT-----------------------------------GRIDDAG 277
           + P++ T+  +L AC  T                                   G  D A 
Sbjct: 259 VLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIAR 318

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            LF  I+EKD + W TMI GY+     E+AL LF  ML  +V+P+  +   ++ +CA L 
Sbjct: 319 ELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLG 378

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSS------ALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +L  G+ VH       +D +L  SS      +LIDMY KCG  + A  VF  M +RN+ S
Sbjct: 379 ALDLGKWVHAY-----IDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS 433

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           WN+M++G+A +G    ALAL+ +++ + L +PD  TFV VLSAC  A L + G  +F S+
Sbjct: 434 WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSM 493

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              +GI+P L HY CMI+LL R+   ++A  L+K++  +P+  IW +LLS C   G ++ 
Sbjct: 494 IQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEF 553

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE  A  LF+LEP NAG +++LSN+YA  GRW+DVA IR+ +  K +KK    + IEID 
Sbjct: 554 GEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDG 613

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH+F+  D+ HPE   IY+ L+++ K L+E GF PNT  VL+D  EE K  ++  HSEK
Sbjct: 614 DVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQHSEK 673

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+++ LIK   G T IRI+KN+RVCG+CH   K  S I  R II RD NRFHHF  G C
Sbjct: 674 LAISFGLIKTKPGTT-IRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGFC 732

Query: 691 SCKDNW 696
           SC D W
Sbjct: 733 SCNDCW 738



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/458 (28%), Positives = 211/458 (46%), Gaps = 50/458 (10%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH---MDLNFYEPNTTFLHNRLLHFYAKSGK 74
           G       +  L   CT+       K+L +H   + L+F       +H  ++H YA  G+
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHF----NPHVHTSVIHMYASVGE 181

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
           + +AR +FDK  LRD +S+ AL++ +   G + D R LFD++P++D VS+N  I+G+   
Sbjct: 182 MDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQS 241

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   EA+  F  MQ+    P   T V  L+AC        GK I   +     G N+ + 
Sbjct: 242 GRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLT 301

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           NAL DMY K GE D AR LFD +  ++++SWN MI GY      ++ + LF+ M    + 
Sbjct: 302 NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVK 361

Query: 255 PDEVTVSNILGAC------------------------------------FQTGRIDDAGR 278
           P++VT   IL AC                                     + G I+ A R
Sbjct: 362 PNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAER 421

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSC--AK 335
           +F  +  ++   W  M+ G+  +G  E AL LF+EM+++ + RPD  +   V+S+C  A 
Sbjct: 422 VFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAG 481

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNS 394
           L  L H Q         G+   L     +ID+  +    ++A  +  NM    +   W S
Sbjct: 482 LVDLGH-QYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGS 540

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           +++    +G+      + ++L Q  L+P++     +LS
Sbjct: 541 LLSACKAHGRVEFGEYVAERLFQ--LEPENAGAFVLLS 576


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 364/641 (56%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G + + R LFDKMP RD +S+N  I+G+   G   E L++FS M+
Sbjct: 232 DVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMR 291

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T  +  +AC  L + R G+ +HG +V    GG++ + N+L  MY+  G ++
Sbjct: 292 ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLE 351

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F RM ++++VSW  MI+  + +  P K ++ ++ M+L G+ PDE+T+ ++L AC 
Sbjct: 352 EAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    +D+A  +F  I  K+ V WT+
Sbjct: 412 CIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTS 471

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I+G   N +  +AL+ F +M  E ++P+  ++ SV+S+CA++ +L  G+ +H  A+  G
Sbjct: 472 LILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           V  D  + +A++DMY +CG    A   FN    ++V +WN ++ GYAQ GQ   A+ L+D
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+L+  + PD  TF+S+L AC  + +   G  +F+ +   + +TP+L HYAC++++LGR+
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D A D I+ +P +P++ IW  LL+ C +  +++ GE+AA+ +FE +  + G YI+L 
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC 709

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA CG W+ V+ +RS M+ + +      SW+EI  KVH F+S D +H +++ I   L 
Sbjct: 710 NLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLD 769

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
               K++E GF  N K       E  +    C HSE+ A+A+ LI    G+ PI + KN+
Sbjct: 770 GFCSKMKENGFG-NLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGM-PIWVXKNL 827

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C  CH  +KF S I+ R I +RD   +HHF  G CSC D
Sbjct: 828 YMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGD 868



 Score =  235 bits (600), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 233/465 (50%), Gaps = 41/465 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NALLS   R G++ D   +F KM  RD  S+N  + G+A  G   EAL ++ RM      
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT  S L  CA + D+ RGK+IH  ++      +V V NAL  MY K G+I  AR L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD+M  R+ +SWN MISGY +NG   + ++LF  M+ L ++PD +T++ +  AC      
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           GR+++A  +F  ++ KD V WT MI   
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +     A+  +  M  E + PD+ ++ SV+S+CA +  L  G  +H  A+  G+   +
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +VS++LIDMY KC   D+A  VF  +  +NVVSW S+I G   N +  EAL L+ + ++E
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKE 494

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           ++KP+S T +SVLSAC       RG+  H  ++    G    L +   ++++  R     
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKV 552

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
            A++   S   K +   W+ LL+  A +G  K        + ELE
Sbjct: 553 PALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 45/340 (13%)

Query: 258 VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           V + N L + F + G + DA  +F  + E+D   W  ++ GY + G  ++AL L++ ML 
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
            ++RP+ ++  SV+ +CA ++ +  G+ +H   +  G + D+ V +ALI MY KCG   +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-- 434
           A  +F+ MP R+ +SWN+MI+GY +NG  LE L L+  + + ++ PD  T  +V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR------------SSDVDKAVDL 482
           L  +   RG + +   S   G     +    M + LGR            S DV     +
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 483 IKS-----LPHK--------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           I S     LP K              P+ +   ++LS CA  G   H ++  R L E+  
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG---HLDLGIR-LHEI-A 426

Query: 524 INAG--PYIMLSN----MYAACGRWEDVASIRSSMKSKNV 557
           I  G   ++++SN    MY+ C   ++   +  ++  KNV
Sbjct: 427 IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R+  +   K + +H  L        FL N +L  Y + G+   A + F+    +D+ +
Sbjct: 510 CARIGALMRGKEIHAHA-LRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTA 567

Query: 93  WNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           WN LL+ +A+ G  +    LFDKM      P  D +++ + +   +  G   E L+ F+ 
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHP--DEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 147 MQKDRFEPT 155
           M K+++  T
Sbjct: 626 M-KNKYNLT 633


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/699 (32%), Positives = 380/699 (54%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  + + G + +A  LF ++    I   N++L+ +A+   +      F+ M  RD VS+
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  IA  +  G  REAL +   M +        T+ S+L ACA+L  L  GKQ+H K++ 
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +AL ++YAK G   +A+ +F+ + +RN VSW ++I G L+     K ++L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 245 FQEMQLLGLNPDEVTVSNILGACF-----------------------------------Q 269
           F +M+   +  D+  ++ ++  CF                                   +
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYT------------------------------ 299
            G + +A  +F  + E+D V WT+MI  Y+                              
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAY 478

Query: 300 -QNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L +++ MLS+ DV PD  +  ++   CA + +   G  + G  V  G+  +
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 538

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V++A I MY KCG   +A  +F+++  ++VVSWN+MI GY+Q+G   +A   +D +L 
Sbjct: 539 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           +  KPD  ++V+VLS C H+ L + G+ +FD ++ VHGI+P L+H++CM++LLGR+  + 
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A DLI  +P KP + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++L+ +Y+
Sbjct: 659 EAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYS 718

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+ +D A +R  M+ K +KK   YSW+E++NKVH F ++D +HP+   I  +L +L++
Sbjct: 719 DAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELME 778

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+   G+              E  +S  +HSEKLA+A+ ++  P    PI IMKN+R+CG
Sbjct: 779 KIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP-AWMPIHIMKNLRICG 826

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S +  R  ++RD  RFHHF  G+CSC D W
Sbjct: 827 DCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 218/481 (45%), Gaps = 76/481 (15%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFD---KMPLRDIISWNALLSAHARSGSVQDLRALF 113
           +  FL N LLH Y   G L  AR L     K P  ++I+ N +++ +A+ GS+ D   LF
Sbjct: 37  SAVFLQNTLLHAYFSCGALSDARRLLRADIKEP--NVITHNIMMNGYAKQGSLSDAEELF 94

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDL 172
           D+MP RD  S+NT ++G+       + L+ F  M +     P  +T    + +C  L   
Sbjct: 95  DRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCR 154

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR---------------- 216
               Q+ G     +  G+  V  AL DM+ + G +D A  LF +                
Sbjct: 155 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 214

Query: 217 ---------------MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
                          M  R++VSWN+MI+   ++G+ ++ + L  EM   G+  D  T +
Sbjct: 215 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 274

Query: 262 NILGACF-----------------------------------QTGRIDDAGRLFHVIKEK 286
           + L AC                                    + G   +A R+F+ ++++
Sbjct: 275 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 334

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           ++V WT +I G  Q      ++ LFN+M +E +  D+F++++++S C     L  G+ +H
Sbjct: 335 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 394

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              +  G +  ++VS++LI +Y KCG   +A  VF+ M  R++VSW SMI  Y+Q G  +
Sbjct: 395 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNII 454

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           +A   +D +   N    + T+ ++L A +     E G   + ++ +   +TP    Y  +
Sbjct: 455 KAREFFDGMDTRN----AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 467 I 467
            
Sbjct: 511 F 511



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 258/593 (43%), Gaps = 111/593 (18%)

Query: 31  LDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI 90
             C  ++D   A+RL   +  +  EPN    HN +++ YAK G L  A +LFD+MP RD+
Sbjct: 50  FSCGALSD---ARRL---LRADIKEPNV-ITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 102

Query: 91  ISWNALLSAHARSGSVQDLRALFDKM-----PIRDSVSYNTAIAGFANKGFSREALQVFS 145
            SWN L+S + ++    D    F  M      + ++ ++   +      G    A Q+  
Sbjct: 103 ASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLG 162

Query: 146 RMQKDRF--EPTDYTHVSALNACAQLLDL--RRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
              K  F  +P   T +  +      +D   R   QI            +F RN++   Y
Sbjct: 163 LFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP--------TIFCRNSMLAGY 214

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK   ID A   F+ M  R++VSWN+MI+   ++G+ ++ + L  EM   G+  D  T +
Sbjct: 215 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 274

Query: 262 NILGAC-----------------------------------FQTGRIDDAGRLFHVIKEK 286
           + L AC                                    + G   +A R+F+ ++++
Sbjct: 275 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 334

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           ++V WT +I G  Q      ++ LFN+M +E +  D+F++++++S C     L  G+ +H
Sbjct: 335 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 394

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDA--------------WT------------- 379
              +  G +  ++VS++LI +Y KCG   +A              WT             
Sbjct: 395 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNII 454

Query: 380 ----VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSAC 434
                F+ M TRN ++WN+M+  Y Q+G + + L +Y  +L Q+++ PD  T+V++   C
Sbjct: 455 KAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGC 514

Query: 435 LHADLFERGQNHFDSISAVHGITPSL-------DHYACMINLLGRSSDVDKAVDLIKSLP 487
             AD+   G N        H +   L       +    M +  GR S+  K  DL+    
Sbjct: 515 --ADI---GANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNG-- 567

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
              + + W+ +++  +  G    G+ AA+   ++    A P YI    + + C
Sbjct: 568 --KDVVSWNAMITGYSQHG---MGKQAAKTFDDMLSKGAKPDYISYVAVLSGC 615



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 139/263 (52%), Gaps = 5/263 (1%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  + A   L+  C    D+ L ++L S + L         + N L+  YAK G L  A 
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHS-LCLKSGHNRAIVVSNSLISLYAKCGDLQNAE 426

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +F  M  RDI+SW ++++A+++ G++   R  FD M  R+++++N  +  +   G   +
Sbjct: 427 FVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEED 486

Query: 140 ALQVFSRM--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            L+++S M  QKD   P   T+V+    CA +   + G QI G  V   L  NV V NA 
Sbjct: 487 GLKMYSAMLSQKD-VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA 545

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MY+K G I +A+ LFD +N +++VSWN MI+GY ++G  K+    F +M   G  PD 
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           ++   +L  C  +G + + G+L+
Sbjct: 606 ISYVAVLSGCSHSGLVQE-GKLY 627



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 210/498 (42%), Gaps = 114/498 (22%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL------------------------ 197
           AL +C     L   + +HG++V   L   VF++N L                        
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEP 69

Query: 198 --------TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM- 248
                    + YAK G +  A  LFDRM  R++ SWN ++SGY +  +    ++ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 249 -----------------------------QLLGL--------NPD-EVTVSNILGACFQT 270
                                        QLLGL        +PD E  + ++   C   
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC--- 186

Query: 271 GRIDDAGRLFHVIK-------------------------------EKDNVCWTTMIVGYT 299
           G +D A RLF  I+                               E+D V W  MI   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q+G+  +AL L  EM  + VR D  + +S +++CA+L SL  G+ +H K +      D  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY 306

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V+SALI++Y KCG   +A  VFN +  RN VSW  +I G  Q     +++ L++++  E 
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL 366

Query: 420 LKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           +  D F   +++S C +  DL    Q H   + + H     + +   +I+L  +  D+  
Sbjct: 367 MAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQN 424

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE-LEPINAGPYIMLSNMYA 537
           A  +  S+  + + + W+++++  +  G+I    + AR  F+ ++  NA  +  +   Y 
Sbjct: 425 AEFVFSSMSER-DIVSWTSMITAYSQIGNI----IKAREFFDGMDTRNAITWNAMLGAYI 479

Query: 538 ACGRWEDVASIRSSMKSK 555
             G  ED   + S+M S+
Sbjct: 480 QHGAEEDGLKMYSAMLSQ 497



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 131/332 (39%), Gaps = 102/332 (30%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW------ 378
           +++  + SC    +L   + +HG+ V +G+   + + + L+  Y  CG   DA       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRAD 65

Query: 379 --------------------------TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
                                      +F+ MP R+V SWN++++GY Q  + L+ L  +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 413 DKLLQE-NLKPDSFTFVSVLSAC-----------------------------LHADLFER 442
             + +  +  P++FTF  V+ +C                                D+F R
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 443 -GQNHFDS--------------------ISAVHGITPSLDHYACM-----------INLL 470
            G   F S                     + ++GI  +++++  M           I  L
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 471 GRSSDVDKAVDLIKSLPHKP---NSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPINA 526
            +S  V +A+ L+  +  K    +S  +++ L+ CA    +  G ++ A+ +  L  I+ 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID- 304

Query: 527 GPYI--MLSNMYAACGRWEDVASIRSSMKSKN 556
            PY+   L  +YA CG +++   + +S++ +N
Sbjct: 305 -PYVASALIELYAKCGSFKEAKRVFNSLQDRN 335


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/671 (35%), Positives = 364/671 (54%), Gaps = 36/671 (5%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C +   +  AK++  H   N    +++ LH +L   Y    ++  AR LFD++
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLH-KLTRLYLSCNQVVLARRLFDEI 69

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
                                          P    + +N  I  +A  G    A+ ++ 
Sbjct: 70  -------------------------------PNPSVILWNQIIRAYAWNGPFDGAIDLYH 98

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M      P  YT+   L AC+ LL +  G +IH    +  L  +VFV  AL D YAK G
Sbjct: 99  SMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            + +A+ LF  M++R++V+WN MI+G    G     + L  +MQ  G+ P+  T+  +L 
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
            C     +  A ++F V+  ++ V W+ MI GY  +   ++AL +F  M    + PD  +
Sbjct: 219 TC---QCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDLTT 275

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           +  V+ +C+ LA+L HG   HG  +V G   D L+ +ALIDMY KCG    A  VFN M 
Sbjct: 276 MLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD 335

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
             ++VSWN+MI GY  +G  +EAL L+  LL   LKPD  TF+ +LS+C H+ L   G+ 
Sbjct: 336 RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRL 395

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            FD++S    I P ++H  CM+++LGR+  +D+A   I+++P +P+  IWS LLS C + 
Sbjct: 396 WFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 455

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            +I+ GE  ++ +  L P + G +++LSN+Y+A GRW+D A IR + K   +KK    SW
Sbjct: 456 KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSW 515

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           IEI+  VH FV  D++H +   I  +L +L+ +++  G+      V  D +EEEK + + 
Sbjct: 516 IEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILL 575

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           YHSEKLA+A+ ++    G  PI + KN+RVCGDCH  +KF + I  R I +RD+NRFHHF
Sbjct: 576 YHSEKLAIAFGILNLKAG-RPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHF 634

Query: 686 VGGNCSCKDNW 696
             G C+C D W
Sbjct: 635 KNGTCNCGDFW 645



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 209/464 (45%), Gaps = 63/464 (13%)

Query: 10  AIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           AID  +S    G    +  Y  ++  C+ +  +E    + SH  + F   +  F+   L+
Sbjct: 93  AIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKM-FGLESDVFVCTALV 151

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD------------------ 108
            FYAK G L  A+ LF  M  RD+++WNA+++  +  G   D                  
Sbjct: 152 DFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSS 211

Query: 109 --------------LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
                          R +FD M +R+ VS++  I G+      +EAL +F  MQ    +P
Sbjct: 212 TIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDP 271

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
              T +  L AC+ L  L+ G   HG ++V     +  + NAL DMY+K G+I  AR +F
Sbjct: 272 DLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVF 331

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI- 273
           +RM+  ++VSWN MI GY  +G   + + LF ++  LGL PD++T   +L +C  +G + 
Sbjct: 332 NRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVM 391

Query: 274 ------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                 D   R F ++   ++      I+G  + G  ++A      M  E   PD    S
Sbjct: 392 EGRLWFDAMSRDFSIVPRMEHCICMVDILG--RAGLIDEAHHFIRNMPFE---PDVRIWS 446

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTV---- 380
           +++S+C    ++  G+ V  K   LG +     +L+S    ++Y   G  DDA  +    
Sbjct: 447 ALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLS----NIYSAAGRWDDAAHIRITQ 502

Query: 381 ----FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
                  +P  + +  N +++ +    Q    L+  ++ L+E L
Sbjct: 503 KDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 546



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 76/329 (23%)

Query: 151 RFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           RFE   +Y H+  L AC Q   L   K+IH   +      +  V + LT +Y    ++  
Sbjct: 4   RFEVKNNYLHL--LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVL 61

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           AR LFD + N +++ WN +I  Y  NG     IDL+  M  LG+ P++ T   +L AC  
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G + +A RLF  +  +D V W  M
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G +  G  +DA+ L  +M  E + P+  +I  V+ +C  L  LY              
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCL--LY-------------- 225

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
                                 A  +F++M  RN VSW++MI GY  +    EAL ++  
Sbjct: 226 ----------------------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRM 263

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERG 443
           +    + PD  T + VL AC H    + G
Sbjct: 264 MQLSGIDPDLTTMLGVLPACSHLAALQHG 292


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 364/643 (56%), Gaps = 36/643 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            DII   +LL  +++   V+     F      + V +N  +  +       ++ ++F +MQ
Sbjct: 396  DIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             +   P  +T+ S L  C  L  L  G+QIH  ++      NV+V + L DMYAK G++ 
Sbjct: 456  MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
             A  +  R+   ++VSW  MI+GY+++    + + LF+EM+  G+  D +  ++ + AC 
Sbjct: 516  LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575

Query: 269  -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                               + GRI +A   F  I +K+N+ W +
Sbjct: 576  GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 294  MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            ++ G  Q+G  E+AL +F  ML  +   + F+  S +S+ A LA++  GQ +H   +  G
Sbjct: 636  LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 354  VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
             D +  VS++LI +Y K G   DAW  FN M  RNV+SWN+MI GY+Q+G  +EAL L++
Sbjct: 696  YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 414  KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            ++    + P+  TFV VLSAC H  L + G ++F+S+  +H + P  +HY C+++LLGR+
Sbjct: 756  EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 474  SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              +D+A++ IK +P   +++IW TLLS C +  +I+ GE AA HL ELEP ++  Y+++S
Sbjct: 816  GQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLIS 875

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            N+YA   +W      R  MK + VKK    SWIE+ N VH F + D+ HP T  IYE + 
Sbjct: 876  NIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             L ++  E G+  ++  +L+++++ +K      HSEKLA+A+ L+   + + PIR+MKN+
Sbjct: 936  HLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNI-PIRVMKNL 994

Query: 654  RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            RVC DCH ++K+ S I  R+II+RD++RFHHF GG CSCKD W
Sbjct: 995  RVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 230/463 (49%), Gaps = 43/463 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ ++RS  +     +F  M  RD VSYN+ I+G   +GFS  AL++F++MQ+D  +
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L+ACA +  L +G Q+H   +   +  ++ +  +L D+Y+K  +++ A   
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F      N+V WN+M+  Y +        ++F++MQ+ G+ P++ T  +IL  C      
Sbjct: 420 FLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 268 --------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                         FQ                G++  A R+   + E D V WT MI GY
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q+    +AL LF EM    ++ D    +S +S+CA + +L  GQ +H ++   G   DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +++ALI +Y +CG   +A+  F  +  +N +SWNS+++G AQ+G   EAL ++ ++L+ 
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             + + FT+ S +SA       ++GQ    S+    G     +    +I+L  +S  +  
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQ-QIHSMVLKTGYDSEREVSNSLISLYAKSGSISD 718

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE 520
           A      +  + N + W+ +++     G  +HG  M A  LFE
Sbjct: 719 AWREFNDMSER-NVISWNAMIT-----GYSQHGCGMEALRLFE 755



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 239/527 (45%), Gaps = 72/527 (13%)

Query: 18  GQAATEEAYT-QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKL 75
            +  T   YT   VL      D+      Q H    +Y  +++  + N L+  Y+K+G +
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
             A+ +F+ + ++DI++W A++S                               G +  G
Sbjct: 212 ESAKKVFNCICMKDIVTWVAMIS-------------------------------GLSQNG 240

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+ +F  M      PT Y   S L+A  ++     G+Q+H  ++        +V N
Sbjct: 241 LEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCN 300

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            L  +Y++  ++  A  +F  MN+R+ VS+N +ISG ++ G   + ++LF +MQ   L P
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 256 DEVTVSNILGACFQTGR-----------------------------------IDDAGRLF 280
           D +TV+++L AC   G                                    ++ A + F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
              + ++ V W  M+V Y Q     D+  +F +M  E + P++F+  S++ +C  L +LY
Sbjct: 421 LTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALY 480

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H   +  G   ++ V S LIDMY K G    A  +   +P  +VVSW +MI GY 
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPS 459
           Q+    EAL L++++    ++ D+  F S +SAC       +GQ  H  S +A  G   S
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +++   +I+L  R   + +A    + +  K N++ W++L+S  A  G
Sbjct: 601 INN--ALISLYARCGRIQEAYLAFEKIGDK-NNISWNSLVSGLAQSG 644



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 226/497 (45%), Gaps = 62/497 (12%)

Query: 72  SGKLFYARDL--------FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           SG LF    L        FD  PL      ++L+  + R G       +FD+   R   S
Sbjct: 71  SGSLFETMRLHCRISKSGFDGEPLLI----DSLVDNYFRHGDQHGAVKVFDENSNRSVFS 126

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL-LDLRRGKQIHGKI 182
           +N  I  F  +  + +   +F RM  +   P  YT    L AC    +     KQ+H + 
Sbjct: 127 WNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  +  V N L D+Y+K G I+ A+ +F+ +  +++V+W  MISG  +NG  ++ I
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAI 246

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC-----FQTG-------------------------- 271
            LF +M    + P    +S++L A      F+ G                          
Sbjct: 247 LLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALY 306

Query: 272 ----RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
               ++  A R+F  +  +D V + ++I G  Q G  + AL LF +M  + ++PD  +++
Sbjct: 307 SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVA 366

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S++S+CA + +L+ G  +H  A+  G+  D+++  +L+D+Y KC   + A   F    T 
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETE 426

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNH 446
           N+V WN M+  Y Q     ++  ++ ++  E + P+ FT+ S+L  C     L+   Q H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 447 FDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
              I         L+ Y C  +I++  +   +  A+ +++ LP + + + W+ +++    
Sbjct: 487 THVIKT----GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIA---- 537

Query: 505 KGDIKHGEMA-ARHLFE 520
            G ++H   + A  LFE
Sbjct: 538 -GYVQHDMFSEALQLFE 553



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 184/396 (46%), Gaps = 40/396 (10%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +Q+ + M++         ++  L  C     L    ++H +I      G   + ++L D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y + G+   A  +FD  +NR++ SWN MI  ++      +   LF+ M   G+ P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 261 SNILGACF------------------------------------QTGRIDDAGRLFHVIK 284
           + +L AC                                     + G I+ A ++F+ I 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD V W  MI G +QNG EE+A++LF +M + ++ P  + +SSV+S+  K+     G+ 
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H   +  G   +  V + L+ +Y +      A  +F+ M +R+ VS+NS+I+G  Q G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHY 463
              AL L+ K+ ++ LKPD  T  S+LSAC       +G Q H  +I A  G++  +   
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA--GMSADIILE 400

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             +++L  + +DV+ A     +     N ++W+ +L
Sbjct: 401 GSLLDLYSKCADVETAHKFFLT-TETENIVLWNVML 435


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 364/641 (56%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G + + R LFDKMP RD +S+N  I+G+   G   E L++FS M+
Sbjct: 232 DVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMR 291

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T  +  +AC  L + R G+ +HG +V    GG++ + N+L  MY+  G ++
Sbjct: 292 ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLE 351

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F RM ++++VSW  MI+  + +  P K ++ ++ M+L G+ PDE+T+ ++L AC 
Sbjct: 352 EAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACA 411

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    +D+A  +F  I  K+ V WT+
Sbjct: 412 CIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTS 471

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I+G   N +  +AL+ F +M  E ++P+  ++ SV+S+CA++ +L  G+ +H  A+  G
Sbjct: 472 LILGLRINNRSFEALLFFRQM-KESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTG 530

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           V  D  + +A++DMY +CG    A   FN    ++V +WN ++ GYAQ GQ   A+ L+D
Sbjct: 531 VGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQGQAKLAVELFD 589

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+L+  + PD  TF+S+L AC  + +   G  +F+ +   + +TP+L HYAC++++LGR+
Sbjct: 590 KMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRA 649

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D A D I+ +P +P++ IW  LL+ C +  +++ GE+AA+ +FE +  + G YI+L 
Sbjct: 650 GQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLC 709

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA CG W+ V+ +RS M+ + +      SW+EI  KVH F+S D +H +++ I   L 
Sbjct: 710 NLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSHSQSKEINGVLD 769

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
               K++E GF  N K       E  +    C HSE+ A+A+ LI    G+ PI + KN+
Sbjct: 770 GFCSKMKENGFG-NLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPGM-PIWVTKNL 827

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C  CH  +KF S I+ R I +RD   +HHF  G CSC D
Sbjct: 828 YMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGD 868



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 153/465 (32%), Positives = 233/465 (50%), Gaps = 41/465 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NALLS   R G++ D   +F KM  RD  S+N  + G+A  G   EAL ++ RM      
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT  S L  CA + D+ RGK+IH  ++      +V V NAL  MY K G+I  AR L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD+M  R+ +SWN MISGY +NG   + ++LF  M+ L ++PD +T++ +  AC      
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNE 315

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           GR+++A  +F  ++ KD V WT MI   
Sbjct: 316 RLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASL 375

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +     A+  +  M  E + PD+ ++ SV+S+CA +  L  G  +H  A+  G+   +
Sbjct: 376 VSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHV 435

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +VS++LIDMY KC   D+A  VF  +  +NVVSW S+I G   N +  EAL L+ + ++E
Sbjct: 436 IVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKE 494

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           ++KP+S T +SVLSAC       RG+  H  ++    G    L +   ++++  R     
Sbjct: 495 SMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCGRKV 552

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
            A++   S   K +   W+ LL+  A +G  K        + ELE
Sbjct: 553 PALNQFNS--QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 167/340 (49%), Gaps = 45/340 (13%)

Query: 258 VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           V + N L + F + G + DA  +F  + E+D   W  ++ GY + G  ++AL L++ ML 
Sbjct: 132 VRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLW 191

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
            ++RP+ ++  SV+ +CA ++ +  G+ +H   +  G + D+ V +ALI MY KCG   +
Sbjct: 192 AEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISN 251

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-- 434
           A  +F+ MP R+ +SWN+MI+GY +NG  LE L L+  + + ++ PD  T  +V SAC  
Sbjct: 252 ARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACEL 311

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR------------SSDVDKAVDL 482
           L  +   RG + +   S   G     +    M + LGR            S DV     +
Sbjct: 312 LDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 483 IKS-----LPHK--------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           I S     LP K              P+ +   ++LS CA  G   H ++  R L E+  
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIG---HLDLGIR-LHEI-A 426

Query: 524 INAG--PYIMLSN----MYAACGRWEDVASIRSSMKSKNV 557
           I  G   ++++SN    MY+ C   ++   +  ++  KNV
Sbjct: 427 IKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNV 466



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R+  +   K + +H  L        FL N +L  Y + G+   A + F+    +D+ +
Sbjct: 510 CARIGALMRGKEIHAHA-LRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTA 567

Query: 93  WNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           WN LL+ +A+ G  +    LFDKM      P  D +++ + +   +  G   E L+ F+ 
Sbjct: 568 WNILLTGYAQQGQAKLAVELFDKMLELEIHP--DEITFISLLCACSKSGMVTEGLEYFNI 625

Query: 147 MQ 148
           M+
Sbjct: 626 MK 627


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/639 (35%), Positives = 363/639 (56%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + ++  V   R +FD+M  RD +S+N+ I G+ + G + + L VF +M     E
Sbjct: 234 NSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T VS    CA    +  G+ +H   V           N L DMY+K G++D A+ +
Sbjct: 294 IDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVV 353

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M+ R++VS+  MI+GY + G   + + LF+EM+  G++PD  TV+ +L  C +   +
Sbjct: 354 FREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLL 413

Query: 274 DDAGRLFHVIKE-----------------------------------KDNVCWTTMIVGY 298
           D+  R+   IKE                                   KD + W T+I GY
Sbjct: 414 DEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGY 473

Query: 299 TQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           ++N    +AL LFN +L E    PD+ +++ V+ +CA L++   G+ +HG  +  G   D
Sbjct: 474 SKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSD 533

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V+++L+DMY KCG    A  +F+ + ++++VSW  MI GY  +G   EA+AL++++ Q
Sbjct: 534 RHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQ 593

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             ++PD  +FVS+L AC H+ L + G   F+ +     I P+++HYAC++++L R+ ++ 
Sbjct: 594 AGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLS 653

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           KA   I+++P  P++ IW  LL  C +  D+K  E  A  +FELEP N G Y++++N+YA
Sbjct: 654 KAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYA 713

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
              +WE+V  +R  +  + ++K    SWIEI  +V+ FV+ D ++PETE I   L  +  
Sbjct: 714 EAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRA 773

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++ E G+SP TK  L D +E EK +++C HSEKLA+A  +I   HG   IR+ KN+RVCG
Sbjct: 774 RMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHG-KIIRVTKNLRVCG 832

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   KF S +  R I+LRDSNRFH F  G+CSC+  W
Sbjct: 833 DCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 167/367 (45%), Gaps = 49/367 (13%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R     NT +  F   G  + A+++     K   +P   T  S L  CA    L+ GK++
Sbjct: 59  RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEV 116

Query: 179 ------HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
                 +G ++  NLG      + L  MY   G++ +A  +FD++     + WN++++  
Sbjct: 117 DNFIRGNGFVLDSNLG------SKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNEL 170

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVS----------------NILGACFQTG----- 271
            K+G     I LF++M   G+  D  T S                 + G   ++G     
Sbjct: 171 AKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERN 230

Query: 272 --------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                         R+D A ++F  + E+D + W ++I GY  NG  E  L +F +ML  
Sbjct: 231 SVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFS 290

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            +  D  +I SV + CA    +  G+ VH   V      +    + L+DMY KCG  D A
Sbjct: 291 GIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSA 350

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             VF  M  R+VVS+ SMI GYA+ G   EA+ L++++ +E + PD +T  +VL+ C   
Sbjct: 351 KVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARN 410

Query: 438 DLFERGQ 444
            L + G+
Sbjct: 411 RLLDEGK 417



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 133/258 (51%), Gaps = 39/258 (15%)

Query: 33  CTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           C R   ++  KR+   +   D+ F      F+ N L+  YAK G +  A  +F +M ++D
Sbjct: 407 CARNRLLDEGKRVHEWIKENDMGF----DIFVSNALMDMYAKCGSMREAELVFSEMRVKD 462

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS-RMQ 148
           IISW                               NT I G++   ++ EAL +F+  + 
Sbjct: 463 IISW-------------------------------NTVIGGYSKNCYANEALSLFNLLLV 491

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           + RF P + T    L ACA L    +G++IHG I+      +  V N+L DMYAK G + 
Sbjct: 492 EKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALL 551

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR LFD + +++LVSW +MI+GY  +G  K+ I LF +M+  G+ PDE++  ++L AC 
Sbjct: 552 LARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACS 611

Query: 269 QTGRIDDAGRLFHVIKEK 286
            +G +D+  R F++++ +
Sbjct: 612 HSGLVDEGWRFFNIMRHE 629



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 143/324 (44%), Gaps = 40/324 (12%)

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G + +A R+F  +K +  + W  ++    ++G    ++ LF +M+S  V  D ++ S V 
Sbjct: 143 GDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVS 202

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            S + L S+  G+ +HG  +  G  +   V ++L+  Y K    D A  VF+ M  R+V+
Sbjct: 203 KSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVI 262

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL----------- 439
           SWNS+INGY  NG   + L+++ ++L   ++ D  T VSV + C  + L           
Sbjct: 263 SWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFG 322

Query: 440 ----FERGQNHFDSISAVHGITPSLD---------------HYACMINLLGRSSDVDKAV 480
               F R     +++  ++     LD                Y  MI    R     +AV
Sbjct: 323 VKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAV 382

Query: 481 DLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN--- 534
            L + +  +   P+    + +L+ CA    +  G+     + E    + G  I +SN   
Sbjct: 383 KLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKE---NDMGFDIFVSNALM 439

Query: 535 -MYAACGRWEDVASIRSSMKSKNV 557
            MYA CG   +   + S M+ K++
Sbjct: 440 DMYAKCGSMREAELVFSEMRVKDI 463


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/502 (41%), Positives = 324/502 (64%), Gaps = 10/502 (1%)

Query: 200 MYAK---GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLGLNP 255
           MYAK    G +D +R +F++M   N++SW  +I+ Y+++G+  K+ I+LF +M    +N 
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN- 59

Query: 256 DEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
               V N L + + ++GR++DA + F ++ EK+ V +  ++ GY +N K E+A +LFNE+
Sbjct: 60  ---CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 116

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
               +    F+ +S++S  A + ++  G+ +HG+ +  G   +  + +ALI MY +CG  
Sbjct: 117 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 176

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           + A+ VFN M  RNV+SW SMI G+A++G    AL ++ K+L+   KP+  T+V+VLSAC
Sbjct: 177 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 236

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H  +   GQ HF+S+   HGI P ++HYACM++LLGRS  + +A++ I S+P   ++L+
Sbjct: 237 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 296

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W TLL  C + G+ + G  AA  + E EP +   YI+LSN++A+ G+W+DV  IR SMK 
Sbjct: 297 WRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 356

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           +N+ K A  SWIE++N+VH+F   + +HP+   IY+EL +L  K++E G+ P+T  VLHD
Sbjct: 357 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHD 416

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
            +EE+K + +  HSEK+A+A+ LI       PIRI KN+RVCGDCH  +K+ S   GR I
Sbjct: 417 IEEEQKEQFLFQHSEKIAVAFGLISTSQS-KPIRIFKNLRVCGDCHTAIKYISMATGREI 475

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           ++RDSNRFHH   G CSC D W
Sbjct: 476 VVRDSNRFHHIKNGVCSCNDYW 497



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 191/426 (44%), Gaps = 54/426 (12%)

Query: 70  AKSGKLFYARDLFDKMPLRDIISW---------------------------------NAL 96
           A  G +  +R +F++MP  +++SW                                 N+L
Sbjct: 6   AADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNSL 65

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           +S +ARSG ++D R  FD +  ++ VSYN  + G+A    S EA  +F+ +       + 
Sbjct: 66  ISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISA 125

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +T  S L+  A +  + +G+QIHG+++ G    N  + NAL  MY++ G I+ A  +F+ 
Sbjct: 126 FTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 185

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M +RN++SW  MI+G+ K+G   + +++F +M   G  P+E+T   +L AC   G I + 
Sbjct: 186 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 245

Query: 277 GRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            + F+ + ++  +      +  M+    ++G   +A+   N M    +  D     +++ 
Sbjct: 246 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTLLG 302

Query: 332 SCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +C    +   G+  H   ++L  + DD      L +++   G   D   +   M  RN++
Sbjct: 303 ACRVHGNTELGR--HAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 391 -----SW----NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
                SW    N +   +       +A  +Y +L Q   K     ++      LH D+ E
Sbjct: 361 KEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLH-DIEE 419

Query: 442 RGQNHF 447
             +  F
Sbjct: 420 EQKEQF 425


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/634 (36%), Positives = 356/634 (56%), Gaps = 43/634 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  +A +G   +   +F +MP +D +S+N+ +A F N G S +AL +   M      
Sbjct: 283 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 342

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  SAL AC       +G+ +HG +VV  L  N  + NAL  MY K GE+ ++R +
Sbjct: 343 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 402

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
             +M  R++V+WN +I GY ++  P K +  FQ M++ G++ + +TV ++L AC   G +
Sbjct: 403 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 462

Query: 274 DDAGR------------------------------------LFHVIKEKDNVCWTTMIVG 297
            + G+                                    LF+ +  ++ + W  M+  
Sbjct: 463 LERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAA 522

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
              +G  E+ L L ++M S  V  D+FS S  +S+ AKLA L  GQ +HG AV LG + D
Sbjct: 523 NAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFEHD 582

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
             + +A  DMY KCG   +   V  M+P    R++ SWN +I+   ++G   E  A + +
Sbjct: 583 SFIFNAAADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHE 639

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +L+  +KP   TFVS+L+AC H  L ++G  ++D I+   G+ P+++H  C+I+LLGRS 
Sbjct: 640 MLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSG 699

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            + +A   I  +P KPN L+W +LL+ C + G++  G  AA +L +LEP +   Y++ SN
Sbjct: 700 RLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSN 759

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           M+A  GRWEDV ++R  M  KN+KK  A SW+++ +KV  F   DRTHP+T  IY +L  
Sbjct: 760 MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 819

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           + K ++E+G+  +T   L DT EE+K  ++  HSE+LALAY L+  P G T +RI KN+R
Sbjct: 820 IKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGST-VRIFKNLR 878

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           +C DCH   KF S +IGR I+LRD  RFHHF  G
Sbjct: 879 ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/460 (24%), Positives = 226/460 (49%), Gaps = 40/460 (8%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL-RR 174
           MP+R+ VS+NT ++G    G   E ++ F +M     +P+ +   S + AC +   + R 
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G Q+HG +    L  +V+V  A+  +Y   G +  +R +F+ M +RN+VSW  ++ GY  
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------------------- 268
            G+P++ ID+++ M+  G+  +E ++S ++ +C                           
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 180

Query: 269 ---------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                      G +D A  +F  + E+D + W ++   Y QNG  E++  +F+ M     
Sbjct: 181 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 240

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
             +  ++S+++S    +     G+ +HG  V +G D  + V + L+ MY   G + +A  
Sbjct: 241 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 300

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF  MPT++++SWNS++  +  +G+ L+AL L   ++      +  TF S L+AC   D 
Sbjct: 301 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 360

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           FE+G+     +  V G+  +      ++++ G+  ++ ++  ++  +P + + + W+ L+
Sbjct: 361 FEKGRI-LHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRR-DVVAWNALI 418

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
              A   D     +AA     +E +++  YI + ++ +AC
Sbjct: 419 GGYAEDEDPDKA-LAAFQTMRVEGVSSN-YITVVSVLSAC 456


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/699 (32%), Positives = 380/699 (54%), Gaps = 79/699 (11%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  + + G + +A  LF ++    I   N++L+ +A+   +      F+ M  RD VS+
Sbjct: 179 LVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSW 238

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  IA  +  G  REAL +   M +        T+ S+L ACA+L  L  GKQ+H K++ 
Sbjct: 239 NMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIR 298

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + +V +AL ++YAK G   +A+ +F+ + +RN VSW ++I G L+     K ++L
Sbjct: 299 SLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVEL 358

Query: 245 FQEMQLLGLNPDEVTVSNILGACF-----------------------------------Q 269
           F +M+   +  D+  ++ ++  CF                                   +
Sbjct: 359 FNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAK 418

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYT------------------------------ 299
            G + +A  +F  + E+D V WT+MI  Y+                              
Sbjct: 419 CGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAY 478

Query: 300 -QNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+G EED L +++ MLS+ DV PD  +  ++   CA + +   G  + G  V  G+  +
Sbjct: 479 IQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILN 538

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V++A I MY KCG   +A  +F+++  ++VVSWN+MI GY+Q+G   +A   +D +L 
Sbjct: 539 VSVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLS 598

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           +  KPD  ++V+VLS C H+ L + G+ +FD ++ VHGI+P L+H++CM++LLGR+  + 
Sbjct: 599 KGAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLT 658

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A DLI  +P KP + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++L+ +Y+
Sbjct: 659 EAKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYS 718

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             G+ +D A +R  M+ K +KK   YSW+E++NKVH F ++D +HP+   I  ++ +L++
Sbjct: 719 DAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELME 778

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K+   G+              E  +S  +HSEKLA+A+ ++  P    PI IMKN+R+CG
Sbjct: 779 KIAHLGYV-----------RTESPRSEIHHSEKLAVAFGIMSLP-AWMPIHIMKNLRICG 826

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S +  R  ++RD  RFHHF  G+CSC D W
Sbjct: 827 DCHTVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 218/481 (45%), Gaps = 76/481 (15%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFD---KMPLRDIISWNALLSAHARSGSVQDLRALF 113
           +  FL N LLH Y   G L  AR L     K P  ++I+ N +++ +A+ GS+ D   LF
Sbjct: 37  SAVFLQNTLLHAYLSCGALSDARRLLRADIKEP--NVITHNIMMNGYAKQGSLSDAEELF 94

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDL 172
           D+MP RD  S+NT ++G+       + L+ F  M +     P  +T    + +C  L   
Sbjct: 95  DRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHRSGDSLPNAFTFCCVMKSCGALGCR 154

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR---------------- 216
               Q+ G     +  G+  V  AL DM+ + G +D A  LF +                
Sbjct: 155 ELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGY 214

Query: 217 ---------------MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
                          M  R++VSWN+MI+   ++G+ ++ + L  EM   G+  D  T +
Sbjct: 215 AKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYT 274

Query: 262 NILGACF-----------------------------------QTGRIDDAGRLFHVIKEK 286
           + L AC                                    + G   +A R+F+ ++++
Sbjct: 275 SSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDR 334

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           ++V WT +I G  Q      ++ LFN+M +E +  D+F++++++S C     L  G+ +H
Sbjct: 335 NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLH 394

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              +  G +  ++VS++LI +Y KCG   +A  VF+ M  R++VSW SMI  Y+Q G  +
Sbjct: 395 SLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNII 454

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           +A   +D +   N    + T+ ++L A +     E G   + ++ +   +TP    Y  +
Sbjct: 455 KAREFFDGMATRN----AITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 467 I 467
            
Sbjct: 511 F 511



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 139/263 (52%), Gaps = 5/263 (1%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  + A   L+  C    D+ L ++L S + L         + N L+  YAK G L  A 
Sbjct: 368 AIDQFALATLISGCFNRMDLCLGRQLHS-LCLKSGHNRAIVVSNSLISLYAKCGDLQNAE 426

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +F  M  RDI+SW ++++A+++ G++   R  FD M  R+++++N  +  +   G   +
Sbjct: 427 FVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEED 486

Query: 140 ALQVFSRM--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            L+++S M  QKD   P   T+V+    CA +   + G QI G  V   L  NV V NA 
Sbjct: 487 GLKMYSAMLSQKD-VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA 545

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MY+K G I +A+ LFD +N +++VSWN MI+GY ++G  K+    F +M   G  PD 
Sbjct: 546 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 605

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           ++   +L  C  +G + + G+L+
Sbjct: 606 ISYVAVLSGCSHSGLVQE-GKLY 627



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 209/498 (41%), Gaps = 114/498 (22%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL------------------------ 197
           AL +C     L   + +HG++V   L   VF++N L                        
Sbjct: 10  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 69

Query: 198 --------TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM- 248
                    + YAK G +  A  LFDRM  R++ SWN ++SGY +  +    ++ F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 249 -----------------------------QLLGL--------NPD-EVTVSNILGACFQT 270
                                        QLLGL        +PD E  + ++   C   
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC--- 186

Query: 271 GRIDDAGRLFHVIK-------------------------------EKDNVCWTTMIVGYT 299
           G +D A RLF  I+                               E+D V W  MI   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q+G+  +AL L  EM  + VR D  + +S +++CA+L SL  G+ +H K +      D  
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPY 306

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V+SALI++Y KCG   +A  VFN +  RN VSW  +I G  Q     +++ L++++  E 
Sbjct: 307 VASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAEL 366

Query: 420 LKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           +  D F   +++S C +  DL    Q H   + + H     + +   +I+L  +  D+  
Sbjct: 367 MAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQN 424

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE-LEPINAGPYIMLSNMYA 537
           A  +  S+  + + + W+++++  +  G+I    + AR  F+ +   NA  +  +   Y 
Sbjct: 425 AEFVFSSMSER-DIVSWTSMITAYSQIGNI----IKAREFFDGMATRNAITWNAMLGAYI 479

Query: 538 ACGRWEDVASIRSSMKSK 555
             G  ED   + S+M S+
Sbjct: 480 QHGAEEDGLKMYSAMLSQ 497



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/332 (19%), Positives = 131/332 (39%), Gaps = 102/332 (30%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW------ 378
           +++  + SC    +L   + +HG+ V +G+   + + + L+  Y  CG   DA       
Sbjct: 6   ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 65

Query: 379 --------------------------TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
                                      +F+ MP R+V SWN++++GY Q  + L+ L  +
Sbjct: 66  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETF 125

Query: 413 DKLLQE-NLKPDSFTFVSVLSAC-----------------------------LHADLFER 442
             + +  +  P++FTF  V+ +C                                D+F R
Sbjct: 126 VSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVR 185

Query: 443 -GQNHFDS--------------------ISAVHGITPSLDHYACM-----------INLL 470
            G   F S                     + ++GI  +++++  M           I  L
Sbjct: 186 CGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAAL 245

Query: 471 GRSSDVDKAVDLIKSLPHKP---NSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPINA 526
            +S  V +A+ L+  +  K    +S  +++ L+ CA    +  G ++ A+ +  L  I+ 
Sbjct: 246 SQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID- 304

Query: 527 GPYI--MLSNMYAACGRWEDVASIRSSMKSKN 556
            PY+   L  +YA CG +++   + +S++ +N
Sbjct: 305 -PYVASALIELYAKCGSFKEAKRVFNSLQDRN 335


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 359/628 (57%), Gaps = 45/628 (7%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIA 129
           + G L  A + F   P +   ++N LL+ +AR+ G + D R LFD++P  D VSYNT + 
Sbjct: 29  RHGDLAGAEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLL 88

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
                G +  A ++F+ M      P                                   
Sbjct: 89  CHFASGDADGARRLFASM------PVR--------------------------------- 109

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V   N +    +K G +++A+ +F  M  RN VSWN M+SG+  +G      + F+   
Sbjct: 110 DVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAP 169

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                 D V  + ++      G +  A + F  +  ++ V W  ++ GY +N   +DAL 
Sbjct: 170 E---KEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALR 226

Query: 310 LFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
           LF  M+ E +V+P+  ++SSV+  C+ L++L  G+ +H   + L +  +L V ++L+ MY
Sbjct: 227 LFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMY 286

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           CKCG    A  +F  M TR+VV+WN+MI+GYAQ+G   EA+ L++++  E ++P+  TFV
Sbjct: 287 CKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            VL+AC+H  L + G   F+ +  ++GI P +DHY+CM++LL R+  +++AVD I+S+P 
Sbjct: 347 VVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPF 406

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +P+   + TLL+ C +  +++  E+AA  L E +P +AG Y+ L+N+YA   +W+DV+ +
Sbjct: 407 EPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRV 466

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           R  MK   V K   YSWIEI   +H+F S DR HP+  +I+E+L +L ++++E G+ P+ 
Sbjct: 467 RRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDL 526

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
             VLHD  E  KV+ +  HSEKLA+A+ LI   HG+T +RI KN+RVCGDCH   K  S 
Sbjct: 527 DFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMT-LRIFKNLRVCGDCHNAAKVISM 585

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I  R IILRD+ RFHHF GG+CSC D W
Sbjct: 586 IEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 162/366 (44%), Gaps = 45/366 (12%)

Query: 58  TTFLHNRLLHFYAKS-GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           TT  +N LL  YA++ G+L  AR LFD++P  D++S+N LL  H  SG     R LF  M
Sbjct: 47  TTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASM 106

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P+RD  S+NT ++G +  G   EA  VF  M         +  + +  AC+   D+   +
Sbjct: 107 PVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVR--NSVSWNAMVSGFACSG--DMSTAE 162

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +            +  +  A+   Y   G + KA   F+ M  RNLVSWN +++GY+KN 
Sbjct: 163 EWFRNAPEKE---DAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNS 219

Query: 237 QPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC---------------------------- 267
                + LF+ M +   + P+  T+S++L  C                            
Sbjct: 220 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVG 279

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G +  A  LF  +  +D V W  MI GY Q+G  ++A+ LF  M  E V 
Sbjct: 280 TSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 321 PDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           P+  +   V+++C        G Q   G   + G++  +   S ++D+ C+ G  + A  
Sbjct: 340 PNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399

Query: 380 VFNMMP 385
               MP
Sbjct: 400 FIRSMP 405



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 139/305 (45%), Gaps = 40/305 (13%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           N  E     L   ++  Y   G +  A   F+ MP+R+++SWNA+               
Sbjct: 167 NAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAV--------------- 211

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLL 170
                           +AG+     + +AL++F  M ++   +P   T  S L  C+ L 
Sbjct: 212 ----------------VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLS 255

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  GKQIH   +   L  N+ V  +L  MY K G++  A  LF  M+ R++V+WN MIS
Sbjct: 256 ALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMIS 315

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV- 289
           GY ++G  K+ I+LF+ M+  G+ P+ +T   +L AC  TG  D   + F  ++E   + 
Sbjct: 316 GYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIE 375

Query: 290 ----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                ++ M+    + GK E A+     M  E   P   +  +++++C    +L   ++ 
Sbjct: 376 PRVDHYSCMVDLLCRAGKLERAVDFIRSMPFE---PHPSAYGTLLAACRVYKNLEFAELA 432

Query: 346 HGKAV 350
            GK +
Sbjct: 433 AGKLI 437


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 365/643 (56%), Gaps = 40/643 (6%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVS---YNTAIAGFANKGFSREALQVFSRM-Q 148
           +++LL A A S ++        ++  R  +S   YN  +    + G   +AL +F  M  
Sbjct: 52  FHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLD 111

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P  +T   AL +C+++  L  G+ I    V   L  + FV ++L  MYA   ++ 
Sbjct: 112 VASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVA 171

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ LFD +    +V WN +I+ Y+KNG   + +++F+ M  +G+  DE+T+ +++ AC 
Sbjct: 172 AAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACG 231

Query: 269 QTG----------RIDDAG-------------------------RLFHVIKEKDNVCWTT 293
           + G           +D+ G                         RLF  ++ +D V W+ 
Sbjct: 232 RIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSA 291

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI GYTQ  +  +AL LF+EM   +V P+  ++ SV+S+CA L +L  G+ VH       
Sbjct: 292 MISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR 351

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +   +++ +AL+D Y KCG  DDA   F  MP +N  +W ++I G A NG+  EAL L+ 
Sbjct: 352 LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 411

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            + + +++P   TF+ VL AC H+ L E G+ HFDS++  +GI P  +HY C+++LLGR+
Sbjct: 412 SMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRA 471

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   I+++P +PN++IW  LLS CA+  +++ GE A + +  L P ++G YI+LS
Sbjct: 472 GLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEALKQIVSLNPSHSGDYILLS 531

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G+W++ A IR  MK + ++K    S IE+D  V +F +ED  HP+ + IY+++ 
Sbjct: 532 NIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEFFAEDSDHPQLKEIYQKVE 591

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           ++I +++ AG+ PNT  V  +  E EK  S+ +HSEKLA+A+ L+K   G T IR+ KN+
Sbjct: 592 EMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAFGLMKLDPGAT-IRLSKNL 650

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH   K  S +  R I++RD NRFHHF  G CSC D W
Sbjct: 651 RVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 121/263 (46%), Gaps = 32/263 (12%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G A  E     +V  C R+ D +L K +  ++D      N   +   L+  YAK G+L  
Sbjct: 215 GVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLM-TALIDMYAKCGELGK 273

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR LFD M  RD+++W+A++S                               G+      
Sbjct: 274 ARRLFDGMQSRDVVAWSAMIS-------------------------------GYTQADQC 302

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           REAL +FS MQ    EP D T VS L+ACA L  L  GK +H  I    L   + +  AL
Sbjct: 303 REALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTAL 362

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            D YAK G ID A   F+ M  +N  +W  +I G   NG+ ++ ++LF  M+   + P +
Sbjct: 363 VDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTD 422

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           VT   +L AC  +  +++  R F
Sbjct: 423 VTFIGVLMACSHSCLVEEGRRHF 445


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/696 (34%), Positives = 377/696 (54%), Gaps = 9/696 (1%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   + +RG AA   A  +++  C R       K + +H            +   L   Y
Sbjct: 156 AFREMQARGVAADGYALARVLHACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMY 215

Query: 70  AKSGKLFYARD-LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSY 124
           A+   +  A   L    P    ++W+A+++   R G V D   L  +M    P     ++
Sbjct: 216 AEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATW 275

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++G A  G  REAL V  RM +    P   T  S L + A    +R G ++H   + 
Sbjct: 276 NAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLR 335

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  + +   AL DMYAK G +D AR +FD + +RNL +WN +++G+   GQ +  ++L
Sbjct: 336 HGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALEL 395

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIVGYTQ 300
            + M+   L+P+  T + ++      G    A  L   IK      + V WT++I G   
Sbjct: 396 VERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCH 455

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+ ED+   F EM  + V+P   ++  ++ +CA LA L  G+ +H  A+    D D++V
Sbjct: 456 NGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALRRAYDCDMVV 515

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +ALIDMY K G    A  +F  +  +N+V  N+M+ G A +GQ  EA+ L+  L +  L
Sbjct: 516 GTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSGL 575

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPDS TF ++L+AC    L   G  +FD++   +G+ P+ ++YACM++LL RS  +D+A+
Sbjct: 576 KPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEAM 635

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            LI+  P  P + +W  LL+ C++ G++   E+AAR+LF LEP N+  Y+M+ ++Y    
Sbjct: 636 ALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLMIMSLYEHEQ 695

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
            +++  S++ +MK++ V     +SWI+I+  +H F  +   HPET  I EEL  L+++++
Sbjct: 696 MYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEICEELMSLVRQIK 755

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
             G+ P+T  V+++  EEEK K +  H+EKLA+ Y LI       P+R++KN R+C DCH
Sbjct: 756 MTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITYGLIHSDASRMPVRVIKNTRMCSDCH 815

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              K  S + GR IILRD+ RFHHFV GNCSC D W
Sbjct: 816 EVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDYW 851



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 123/280 (43%), Gaps = 43/280 (15%)

Query: 271 GRIDDAGRLFHVIKE----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
           GR   + RL     E    KD V W   +    + G+ ++A+  F EM +  V  D +++
Sbjct: 113 GRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYAL 172

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYC---------------- 369
           + V+ +C + A+   G+ VH  A+  G VD   LV   L  MY                 
Sbjct: 173 ARVLHACGRAAARREGKAVHAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRAT 232

Query: 370 ----------------KCGVTDDAWTVFNMM----PTRNVVSWNSMINGYAQNGQDLEAL 409
                           + G+ DDA  +   M    P   + +WN++++G A++G+D EAL
Sbjct: 233 PPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREAL 292

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           A+  ++L++ L PD+ T  S+L +  +A +   G          HG+ P       ++++
Sbjct: 293 AVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGME-VHCFFLRHGLVPDAYTGTALVDM 351

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
             +   +D A  +  +L H+ N   W++L++  A  G  +
Sbjct: 352 YAKCGRLDCARRVFDTLEHR-NLATWNSLVAGHAYAGQFE 390


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/570 (38%), Positives = 335/570 (58%), Gaps = 37/570 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  CA+      G+  H +I+   L  ++   N L +MY+K   +D AR  F+ M  ++L
Sbjct: 50  LQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVKSL 109

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
           VSWN +I    +N + ++ + L  +MQ  G   +E T+S++L  C               
Sbjct: 110 VSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLHAF 169

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                +   I DA ++F  + EK+ V W++M+ GY QNG  E+A
Sbjct: 170 SIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEA 229

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L++F          D F ISS VS+CA LA+L  G+ VH  +   G   ++ VSS+LIDM
Sbjct: 230 LLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDM 289

Query: 368 YCKCGVTDDAWTVFN-MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           Y KCG   +A+ VF  ++  R++V WN+MI+G+A++ +  EA+ L++K+ Q    PD  T
Sbjct: 290 YAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVT 349

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           +V VL+AC H  L E GQ +FD +   H ++PS+ HY+CMI++LGR+  V KA DLI+ +
Sbjct: 350 YVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERM 409

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P    S +W +LL+ C + G+I+  E+AA++LFE+EP NAG +I+L+N+YAA  +W++VA
Sbjct: 410 PFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVA 469

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
             R  ++  +V+K    SWIEI NK+H F   +R HP+ + IY +L  L+ +L++  +  
Sbjct: 470 RARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKV 529

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
           +T   LHD +E  K   + +HSEKLA+ + L+  P  + PIRI+KN+R+CGDCH FMK  
Sbjct: 530 DTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDI-PIRIIKNLRICGDCHTFMKLV 588

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S    R II+RD+NRFHHF  G CSC + W
Sbjct: 589 SKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 160/346 (46%), Gaps = 38/346 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI++ N L++ +++   V   R  F++MP++  VS+NT I         REAL++  +MQ
Sbjct: 77  DILTSNMLINMYSKCSLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQ 136

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++     ++T  S L  CA    +    Q+H   +   +  N FV  AL  +YAK   I 
Sbjct: 137 REGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIK 196

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F+ M  +N V+W+ M++GY++NG  ++ + +F+  QL+G + D   +S+ + AC 
Sbjct: 197 DASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACA 256

Query: 268 ----------------------------------FQTGRIDDAGRLFH-VIKEKDNVCWT 292
                                              + G I +A  +F  V++ +  V W 
Sbjct: 257 GLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWN 316

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI G+ ++ +  +A+ILF +M      PD  +   V+++C+ +     GQ      V  
Sbjct: 317 AMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQ 376

Query: 353 -GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMI 396
             +   +L  S +ID+  + G+   A+ +   MP     S W S++
Sbjct: 377 HNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLL 422



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 130/266 (48%), Gaps = 42/266 (15%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A+   +L+C +++    A  +++ +D N       F+   LLH YAK   +  A  +F+ 
Sbjct: 155 AFKCAILECMQLH----AFSIKAAIDSN------CFVGTALLHVYAKCSSIKDASQMFES 204

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP ++ ++W++++                               AG+   GF  EAL +F
Sbjct: 205 MPEKNAVTWSSMM-------------------------------AGYVQNGFHEEALLIF 233

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
              Q   F+   +   SA++ACA L  L  GKQ+H        G N++V ++L DMYAK 
Sbjct: 234 RNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKC 293

Query: 205 GEIDKARWLFDR-MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G I +A  +F   +  R++V WN MISG+ ++ +  + + LF++MQ  G  PD+VT   +
Sbjct: 294 GCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCV 353

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNV 289
           L AC   G  ++  + F ++  + N+
Sbjct: 354 LNACSHMGLHEEGQKYFDLMVRQHNL 379


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/695 (33%), Positives = 390/695 (56%), Gaps = 14/695 (2%)

Query: 14  LYSRGQAATEEA----YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           L+ R Q+A+ +A      +L+  C ++  +   K++  ++ + F   + T + N ++  Y
Sbjct: 219 LFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYV-IRFGRVSNTSICNSIVSMY 277

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYN 125
           +++ +L  AR  FD     +  SWN+++S++A +  +     L  +M       D +++N
Sbjct: 278 SRNNRLELARVAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWN 337

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
           + ++G   +G     L  F  +Q   F+P   +  SAL A   L     GK+IHG I+  
Sbjct: 338 SLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRS 397

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  +V+V  +L D Y K   +DKA  +F    N+N+ +WN +ISGY   G       L 
Sbjct: 398 KLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLL 457

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMIVGYTQN 301
            +M+  G+ PD VT ++++     +GR ++A  + + IK      + V WT MI G  QN
Sbjct: 458 NQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQN 517

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
               DAL  F++M  E+V+P+  +I +++ +CA  + L  G+ +H  ++  G  DD+ ++
Sbjct: 518 ENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIA 577

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +ALIDMY K G    A  VF  +  + +  WN M+ GYA  G   E   L+D++ +  ++
Sbjct: 578 TALIDMYGKGGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVR 637

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           PD+ TF ++LS C ++ L   G  +FDS+   + I P+++HY+CM++LLG++  +D+A+D
Sbjct: 638 PDAITFTALLSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALD 697

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
            I ++P K ++ IW  +L+ C +  DIK  E+AAR+L  LEP N+  Y ++ N+Y+   R
Sbjct: 698 FIHAVPQKADASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDR 757

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W DV  ++ SM +  VK    +SWI++   +H F +E ++HPE   IY EL +LI ++++
Sbjct: 758 WGDVERLKESMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKK 817

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
            G+  +   V  +  + EK K +  H+EKLA+ Y L+K   G +PIR++KN R+C DCH 
Sbjct: 818 LGYVLDINCVHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGG-SPIRVVKNTRICHDCHT 876

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             K+ S    R I LRD  RFHHF+ G CSCKD W
Sbjct: 877 TAKYISLARNREIFLRDGGRFHHFMNGECSCKDRW 911



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 216/470 (45%), Gaps = 42/470 (8%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL++ + +   +     +FD+ P+++   +NT +          +AL++F RMQ    + 
Sbjct: 171 ALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKA 230

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           TD T V  L AC +L  L  GKQIHG ++      N  + N++  MY++   ++ AR  F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAF 290

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D   + N  SWN +IS Y  N       DL QEM+  G+ PD +T               
Sbjct: 291 DSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIIT--------------- 335

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
                           W +++ G+   G  E+ L  F  + S   +PD  SI+S + +  
Sbjct: 336 ----------------WNSLLSGHLLQGSYENVLTNFRSLQSAGFKPDSCSITSALQAVI 379

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            L     G+ +HG  +   ++ D+ V ++L+D Y K    D A  VF+    +N+ +WNS
Sbjct: 380 GLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKNDCLDKAEVVFHHTKNKNICAWNS 439

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I+GY   G    A  L +++ +E +KPD  T+ S++S    +   E      + I ++ 
Sbjct: 440 LISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLVSGYSMSGRSEEALAVINRIKSL- 498

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
           G+TP++  +  MI+   ++ +   A+     +     KPNS    TLL  CA    +K G
Sbjct: 499 GLTPNVVSWTAMISGCCQNENYMDALQFFSQMQEENVKPNSTTICTLLRACAGSSLLKIG 558

Query: 512 E----MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           E     + RH F L+ I     ++  +MY   G+ +    +  ++K K +
Sbjct: 559 EEIHCFSMRHGF-LDDIYIATALI--DMYGKGGKLKVAHEVFRNIKEKTL 605



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-NGKEEDALILFNEMLSEDVRPDKFSI 326
            Q G  + A ++F V   ++ + W + I  +    G   + L +F E+  + V+ D  ++
Sbjct: 75  LQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEILAVFKELHDKGVKFDSKAL 134

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           + V+  C  L  L+ G  VH   V  G   D+ +S ALI++Y K    D A  VF+  P 
Sbjct: 135 TVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPL 194

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           +    WN+++    ++ +  +AL L+ ++   + K    T V +L AC
Sbjct: 195 QEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQAC 242


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/662 (35%), Positives = 370/662 (55%), Gaps = 39/662 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G L +A  + D +   ++   +A++  + +    +  R +FD MP RD+V +NT I+G
Sbjct: 130 RVGVLLHAHSIVDGVA-SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           F+   +  ++++VF  M          T  + L A A+L + R G  I        L  +
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-- 248
           V+V   L  +Y+K G+  K R LFD+++  +L+S+N MISGY  N + +  + LF+E+  
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 249 --------QLLGLNPD------------------------EVTVSNILGACF-QTGRIDD 275
                    L+GL P                         + +VS  L   + +   +  
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A +LF    EK    W  MI GYTQNG  + A+ LF EM+ + + P+  +++S++S+CA+
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQ 427

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L +L  G+ VHG      ++ ++ VS+AL+DMY KCG   +A  +F++M  +NVV+WN+M
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAM 487

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I GY  +G   EAL L+ ++LQ  + P   TF+S+L AC H+ L   G   F S++  +G
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
             P  +HYACM+++LGR+  +  A++ I+ +P +P   +W  LL  C +  + +   +A+
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           + LF+L+P N G Y++LSN+Y+    +   AS+R  +K + + K    + IEID++ + F
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT-KLVLHDTQEEEKVKSICYHSEKLALA 634
            S DR+HP+   I+E L KL  K++EAG+   T    LHD ++EEK   +  HSEKLA+A
Sbjct: 668 TSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIA 727

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G T IRI+KN+RVC DCH   KF S I  R I++RD+NRFHHF  G CSC D
Sbjct: 728 FGLISTKPG-TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 695 NW 696
            W
Sbjct: 787 YW 788



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 229/478 (47%), Gaps = 56/478 (11%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSA 162
           G+V  +R LF+K+   D   +N  I GF++ G  + ++ +++ + +K    P ++T+  A
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFA 119

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++A ++L D R G  +H   +V  +  N+FV +A+ D+Y K    + AR +FD M  R+ 
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ------------- 269
           V WN MISG+ +N   +  I +F +M  +GL+ D  T++ +L A  +             
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 270 -------------TGRIDD--------AGR-LFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                        TG I           GR LF  I + D + +  MI GYT N + E A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + LF E+L+   R +  ++  ++        L   +++   ++ +G+     VS+AL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           YC+      A  +F+  P +++ SWN+MI+GY QNG    A++L+ +++ + L P+  T 
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTV 418

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPS------LDHYACMINLLGRSSDVDKAVD 481
            S+LSAC        G+        VHG+  S      +     ++++  +   + +A  
Sbjct: 419 TSILSACAQLGALSIGK-------WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYA 537
           L   +  K N + W+ +++   + G   HG+ A +  +E+      P     LS +YA
Sbjct: 472 LFDLMVDK-NVVTWNAMITGYGLHG---HGKEALKLFYEMLQSGIPPTGVTFLSILYA 525



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 201/456 (44%), Gaps = 71/456 (15%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           QI  ++++  +  ++     LT  +   G +   R LF++++  +L  +N++I G+  NG
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 237 QPKKCIDLFQEM-QLLGLNPDEVTV----------------------------------- 260
            PK  I L+  + +   L PD  T                                    
Sbjct: 92  LPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           S I+   F+  R + A ++F V+ E+D V W TMI G+++N   ED++ +F +ML   + 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            D  ++++V+++ A+L     G  +   A   G+  D+ V + LI +Y KCG +     +
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL---HA 437
           F+ +   +++S+N+MI+GY  N +   A+ L+ +LL    + +S T V ++   L   H 
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 438 DLFERGQNHFDSISAV--HGITPSLDHYACMIN-------LLGRSSD------------- 475
            L    QN    I  +    ++ +L    C +N       L   S +             
Sbjct: 332 QLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 476 -----VDKAVDLIKS-LPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
                 D+A+ L +  +P   PN +  +++LS CA  G +  G+     L + E + +  
Sbjct: 392 TQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW-VHGLIKSERLESNV 450

Query: 529 YI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           Y+   L +MYA CG   +   +   M  KNV  + A
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 92/183 (50%), Gaps = 7/183 (3%)

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +R  +F ++ ++++   L+ L     +  + ++ G+  DL   + L   +   G      
Sbjct: 11  IRGQRFFLT-LLNNATTLSQLLQ---IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVR 66

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLHA 437
            +FN +   ++  +N +I G++ NG    ++ LY  L ++ NL+PD+FT+   +SA    
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRL 126

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
           +  ER      + S V G+  +L   + +++L  + +  + A  +   +P + ++++W+T
Sbjct: 127 E-DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPER-DTVLWNT 184

Query: 498 LLS 500
           ++S
Sbjct: 185 MIS 187


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/662 (35%), Positives = 370/662 (55%), Gaps = 39/662 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G L +A  + D +   ++   +A++  + +    +  R +FD MP RD+V +NT I+G
Sbjct: 130 RVGVLLHAHSIVDGVA-SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           F+   +  ++++VF  M          T  + L A A+L + R G  I        L  +
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSD 248

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-- 248
           V+V   L  +Y+K G+  K R LFD+++  +L+S+N MISGY  N + +  + LF+E+  
Sbjct: 249 VYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLA 308

Query: 249 --------QLLGLNPD------------------------EVTVSNILGACF-QTGRIDD 275
                    L+GL P                         + +VS  L   + +   +  
Sbjct: 309 SGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQF 368

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A +LF    EK    W  MI GYTQNG  + A+ LF EM+ + + P+  +++S++S+CA+
Sbjct: 369 ARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQ 427

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L +L  G+ VHG      ++ ++ VS+AL+DMY KCG   +A  +F++M  +NVV+WN+M
Sbjct: 428 LGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAM 487

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I GY  +G   EAL L+ ++LQ  + P   TF+S+L AC H+ L   G   F S++  +G
Sbjct: 488 ITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYG 547

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
             P  +HYACM+++LGR+  +  A++ I+ +P +P   +W  LL  C +  + +   +A+
Sbjct: 548 FQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVAS 607

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           + LF+L+P N G Y++LSN+Y+    +   AS+R  +K + + K    + IEID++ + F
Sbjct: 608 KRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVF 667

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT-KLVLHDTQEEEKVKSICYHSEKLALA 634
            S DR+HP+   I+E L KL  K++EAG+   T    LHD ++EEK   +  HSEKLA+A
Sbjct: 668 TSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIA 727

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G T IRI+KN+RVC DCH   KF S I  R I++RD+NRFHHF  G CSC D
Sbjct: 728 FGLISTKPG-TEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGD 786

Query: 695 NW 696
            W
Sbjct: 787 YW 788



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/478 (26%), Positives = 229/478 (47%), Gaps = 56/478 (11%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSA 162
           G+V  +R LF+K+   D   +N  I GF++ G  + ++ +++ ++K     P ++T+  A
Sbjct: 60  GAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFA 119

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++A ++L D R G  +H   +V  +  N+FV +A+ D+Y K    + AR +FD M  R+ 
Sbjct: 120 ISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDT 179

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ------------- 269
           V WN MISG+ +N   +  I +F +M  +GL+ D  T++ +L A  +             
Sbjct: 180 VLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCL 239

Query: 270 -------------TGRIDD--------AGR-LFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                        TG I           GR LF  I + D + +  MI GYT N + E A
Sbjct: 240 ASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESA 299

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + LF E+L+   R +  ++  ++        L   +++   ++ +G+     VS+AL  +
Sbjct: 300 VTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTV 359

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           YC+      A  +F+  P +++ SWN+MI+GY QNG    A++L+ +++ + L P+  T 
Sbjct: 360 YCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTV 418

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPS------LDHYACMINLLGRSSDVDKAVD 481
            S+LSAC        G+        VHG+  S      +     ++++  +   + +A  
Sbjct: 419 TSILSACAQLGALSIGK-------WVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYA 537
           L   +  K N + W+ +++   + G   HG+ A +  +E+      P     LS +YA
Sbjct: 472 LFDLMVDK-NVVTWNAMITGYGLHG---HGKEALKLFYEMLQSGIPPTGVTFLSILYA 525



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 110/456 (24%), Positives = 201/456 (44%), Gaps = 71/456 (15%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           QI  ++++  +  ++     LT  +   G +   R LF++++  +L  +N++I G+  NG
Sbjct: 32  QIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNG 91

Query: 237 QPKKCIDLFQEM-QLLGLNPDEVTV----------------------------------- 260
            PK  I L+  + +   L PD  T                                    
Sbjct: 92  LPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVG 151

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           S I+   F+  R + A ++F V+ E+D V W TMI G+++N   ED++ +F +ML   + 
Sbjct: 152 SAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLS 211

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            D  ++++V+++ A+L     G  +   A   G+  D+ V + LI +Y KCG +     +
Sbjct: 212 FDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRIL 271

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL---HA 437
           F+ +   +++S+N+MI+GY  N +   A+ L+ +LL    + +S T V ++   L   H 
Sbjct: 272 FDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHL 331

Query: 438 DLFERGQNHFDSISAV--HGITPSLDHYACMIN-------LLGRSSD------------- 475
            L    QN    I  +    ++ +L    C +N       L   S +             
Sbjct: 332 QLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGY 391

Query: 476 -----VDKAVDLIKS-LPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
                 D+A+ L +  +P   PN +  +++LS CA  G +  G+     L + E + +  
Sbjct: 392 TQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW-VHGLIKSERLESNV 450

Query: 529 YI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           Y+   L +MYA CG   +   +   M  KNV  + A
Sbjct: 451 YVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNA 486



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 91/183 (49%), Gaps = 7/183 (3%)

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +R  +F ++ ++++   L+ L     +  + ++ G+  DL   + L   +   G      
Sbjct: 11  IRGQRFFLT-LLNNATTLSQLLQ---IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVR 66

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHA 437
            +FN +   ++  +N +I G++ NG    ++ LY  L +  NL+PD+FT+   +SA    
Sbjct: 67  QLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRL 126

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
           +  ER      + S V G+  +L   + +++L  + +  + A  +   +P + ++++W+T
Sbjct: 127 E-DERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPER-DTVLWNT 184

Query: 498 LLS 500
           ++S
Sbjct: 185 MIS 187


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/701 (33%), Positives = 380/701 (54%), Gaps = 18/701 (2%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   + +RG A    A  + +  C R       + + +H     +      +   L   Y
Sbjct: 170 AFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFLAGMY 229

Query: 70  AKSGKLFYARDLF---DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV---- 122
           A+S  +  AR +    D  P    ++WN +++  AR G V D   L ++M     +    
Sbjct: 230 AESADVGAARRVLETEDAPP----VAWNVVVACCARLGLVDDALDLAERMARSGRLELEP 285

Query: 123 ---SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
              ++N  ++G A  G  REA  V   M     +P   +  S L + A L  L  G + H
Sbjct: 286 SLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAH 345

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  +   L  +V+   A  DMYAK G ++ A+ +FD +  RN+ +WN +++GY   GQ  
Sbjct: 346 GFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFD 405

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295
             +DL +EM+   L+PD  T + ++      G+   A  L   IK      + V WT++I
Sbjct: 406 HALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVSWTSLI 465

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G   NG  ED+   FNEM  + V+P   ++S ++ +CA LA L  G+ +H  A+    D
Sbjct: 466 SGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYD 525

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D++V +ALIDMY K G    A  +F  +   N+VS N+M+ G A +GQ  EA+AL+  +
Sbjct: 526 RDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDM 585

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
               LKPDS TF ++L+AC   DL   G  +FD++ + +G+TP++++YACM++LL R   
Sbjct: 586 CNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGY 645

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A+D I   P K  S +W  LL+ C + G++   E AAR LF+LEP N+  Y+ + ++
Sbjct: 646 LDEAMDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSANYLQMVSL 705

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           Y     +++  S++ +MK++ +     +SWI+I+  +H F  E + HP+T  IYEEL +L
Sbjct: 706 YEHEQMFDEAESLKYAMKARALDTRPGWSWIQIEQSIHVFEVEGKPHPDTAEIYEELIRL 765

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
           + +++++G+ P+T  ++++  EEEK K +  H+EKLA+ Y LI       PIR++KN R+
Sbjct: 766 VFQIRKSGYVPDTSCIVYNVPEEEKEKLLLSHTEKLAITYGLIHSDASRVPIRVIKNTRM 825

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH   K  S +  R IILRD++RFH+F  G CSC + W
Sbjct: 826 CNDCHELAKHISALCARQIILRDADRFHYFTDGKCSCNNCW 866



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 196/445 (44%), Gaps = 41/445 (9%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           SV +N  +A  A      +A+  F  M+     P  Y    AL+AC +    R G+ +H 
Sbjct: 148 SVLWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHA 207

Query: 181 KIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
                G++  +  V   L  MYA+  ++  AR + +   +   V+WN++++   + G   
Sbjct: 208 HAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLE-TEDAPPVAWNVVVACCARLGLVD 266

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
             +DL + M                    ++GR++          E     W  ++ G  
Sbjct: 267 DALDLAERMA-------------------RSGRLE---------LEPSLATWNAVLSGCA 298

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           +NG++ +A  +   ML + ++PD  S+SS++ S A L  L HG   HG  +   ++ D+ 
Sbjct: 299 RNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQLEPDVY 358

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
             +A +DMY KCG  + A  VF+ +  RN+ +WNS++ GYA  GQ   AL L +++ +  
Sbjct: 359 TGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNR 418

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           L PD  T+  +++         +       I A+ G+TP++  +  +I+    + D + +
Sbjct: 419 LDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKAI-GLTPNVVSWTSLISGSCNNGDYEDS 477

Query: 480 VDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIML 532
                 +     +P+ +  S LL  CA    +K G+     A R  ++ + +     I  
Sbjct: 478 FYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYDRDMVVGTALI-- 535

Query: 533 SNMYAACGRWEDVASIRSSMKSKNV 557
            +MY+  G       I   ++  N+
Sbjct: 536 -DMYSKSGNLASAQRIFERIQENNL 559


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/630 (36%), Positives = 356/630 (56%), Gaps = 60/630 (9%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI- 182
           YN  I  F   G  R A+++ ++  K   E    T+ S L  CA L  ++ G++IH  I 
Sbjct: 71  YNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHSIIQ 128

Query: 183 -----VVGNLGGN-------------------------VFVRNALTDMYAKGG------- 205
                V G LG                           VF+ N L + YAK G       
Sbjct: 129 SNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLS 188

Query: 206 -----------EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
                       ++ AR LFD + +R+++SWN MISGY+ NG  +K +DLF++M LLG+N
Sbjct: 189 LFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN 248

Query: 255 PD-------EVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
            D       E+T++N L   + ++G ++ A ++F  + E+  V WT+MI GY + G  + 
Sbjct: 249 TDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDM 308

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           ++ LF+EM  ED+ P+  +++ ++ +CA LA+L  GQ +HG  +  G   D  V++AL+D
Sbjct: 309 SVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 368

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KCG    A  +F+M+P +++VSW  MI GY  +G   EA+A ++++    ++PD  +
Sbjct: 369 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 428

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           F+S+L AC H+ L + G   F+ +     I P  +HYAC+++LL R+ ++ KA   IK +
Sbjct: 429 FISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 488

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +P++ IW  LL  C +  D+K  E  A H+FELEP N G Y++L+N+YA   +WE+V 
Sbjct: 489 PIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVK 548

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            +R  +  + ++K    SWIEI  KVH FV+ D +HP    I   L K   +++E G  P
Sbjct: 549 KLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFP 608

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
             +  L    + EK  ++C HSEK+A+A+ ++  P G T +R+ KN+RVCGDCH   KF 
Sbjct: 609 KMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKT-VRVTKNLRVCGDCHEMAKFM 667

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S ++ R IILRDSNRFHHF  G+CSC+ +W
Sbjct: 668 SKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 142/293 (48%), Gaps = 63/293 (21%)

Query: 59  TFLHNRLLHFYAKSG------------------KLFYARDLFDKMPLRDIISWNALLSAH 100
            FL N L++ YAK G                  ++  AR LFD++  RD+ISWN+++S +
Sbjct: 167 VFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGY 226

Query: 101 -------------------------------------------ARSGSVQDLRALFDKMP 117
                                                      ++SG++     +F+ M 
Sbjct: 227 VSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMG 286

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            R  VS+ + IAG+A +G S  ++++F  M+K+   P   T    L ACA L  L RG++
Sbjct: 287 ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQE 346

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IHG I+      +  V NAL DMY K G +  AR LFD +  ++LVSW +MI+GY  +G 
Sbjct: 347 IHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGY 406

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
             + I  F EM+  G+ PDEV+  +IL AC  +G +D+    F+++  ++N C
Sbjct: 407 GSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM--RNNCC 457



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 192/453 (42%), Gaps = 94/453 (20%)

Query: 7   LRQAIDTLYSRGQAATE-EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           LR+A++ +    +   E   Y  ++  C  +  ++  +R+ S +  N  E +   L ++L
Sbjct: 84  LRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGV-LGSKL 142

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS------------------VQ 107
           +  Y   G L   R +FDK+    +  WN L++ +A+ G+                  V+
Sbjct: 143 VFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVE 202

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
             R LFD++  RD +S+N+ I+G+ + G S + L +F +M          T VS      
Sbjct: 203 SARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSV----- 257

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
                                  + + N L DMY+K G ++ A  +F+ M  R++VSW  
Sbjct: 258 ----------------------ELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 295

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           MI+GY + G     + LF EM+   L P+ +T++ IL AC                    
Sbjct: 296 MIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNG 355

Query: 268 ---------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           + G +  A  LF +I EKD V WT MI GY  +G   +A+  FN
Sbjct: 356 FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFN 415

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALID 366
           EM +  + PD+ S  S++ +C+     + G +  G      + ++  +       + ++D
Sbjct: 416 EMRNSGIEPDEVSFISILYACS-----HSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVD 470

Query: 367 MYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           +  + G    A+    MMP   +   W +++ G
Sbjct: 471 LLARAGNLSKAYKFIKMMPIEPDATIWGALLCG 503


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 363/643 (56%), Gaps = 36/643 (5%)

Query: 89   DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            DII   +LL  +++   V+     F      + V +N  +  +       ++ ++F +MQ
Sbjct: 396  DIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQ 455

Query: 149  KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             +   P  +T+ S L  C  L  L  G+QIH  ++      NV+V + L DMYAK G++ 
Sbjct: 456  MEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLA 515

Query: 209  KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
             A  +  R+   ++VSW  MI+GY+++    + + LF+EM+  G+  D +  ++ + AC 
Sbjct: 516  LALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACA 575

Query: 269  -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                               + GRI +A   F  I +K+N+ W +
Sbjct: 576  GIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNS 635

Query: 294  MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            ++ G  Q+G  E+AL +F  ML  +   + F+  S +S+ A LA++  GQ +H   +  G
Sbjct: 636  LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695

Query: 354  VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
             D +  VS++LI +Y K G   DAW  FN M  RNV+SWN+MI GY+Q+G  +EAL L++
Sbjct: 696  YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755

Query: 414  KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            ++    + P+  TFV VLSAC H  L + G ++F+S+  +H + P  +HY C+++LLGR+
Sbjct: 756  EMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRA 815

Query: 474  SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
              +D+A++ IK +P   +++IW TLLS C +  +I+ GE AA HL ELEP ++  Y+++S
Sbjct: 816  GQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLIS 875

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            N+YA   +W      R  MK   VKK    SWIE+ N VH F + D+ HP T  IYE + 
Sbjct: 876  NIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIG 935

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             L ++  E G+  ++  +L+++++ +K      HSEKLA+A+ L+   + + PIR+MKN+
Sbjct: 936  HLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNI-PIRVMKNL 994

Query: 654  RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            RVC DCH ++K+ S I  R+II+RD++RFHHF GG CSCKD W
Sbjct: 995  RVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 132/463 (28%), Positives = 230/463 (49%), Gaps = 43/463 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ ++RS  +     +F  M  RD VSYN+ I+G   +GFS  AL++F++MQ+D  +
Sbjct: 300 NGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLK 359

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L+ACA +  L +G Q+H   +   +  ++ +  +L D+Y+K  +++ A   
Sbjct: 360 PDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKF 419

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F      N+V WN+M+  Y +        ++F++MQ+ G+ P++ T  +IL  C      
Sbjct: 420 FLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGAL 479

Query: 268 --------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                         FQ                G++  A R+   + E D V WT MI GY
Sbjct: 480 YLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGY 539

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q+    +AL LF EM    ++ D    +S +S+CA + +L  GQ +H ++   G   DL
Sbjct: 540 VQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADL 599

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +++ALI +Y +CG   +A+  F  +  +N +SWNS+++G AQ+G   EAL ++ ++L+ 
Sbjct: 600 SINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRT 659

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             + + FT+ S +SA       ++GQ    S+    G     +    +I+L  +S  +  
Sbjct: 660 EAEVNMFTYGSAISAAASLANIKQGQ-QIHSMVLKTGYDSEREVSNSLISLYAKSGSISD 718

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE 520
           A      +  + N + W+ +++     G  +HG  M A  LFE
Sbjct: 719 AWREFNDMSER-NVISWNAMIT-----GYSQHGCGMEALRLFE 755



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 239/527 (45%), Gaps = 72/527 (13%)

Query: 18  GQAATEEAYT-QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKL 75
            +  T   YT   VL      D+      Q H    +Y  +++  + N L+  Y+K+G +
Sbjct: 152 AEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYI 211

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
             A+ +F+ + ++DI++W A++S                               G +  G
Sbjct: 212 ESAKKVFNCICMKDIVTWVAMIS-------------------------------GLSQNG 240

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+ +F  M      PT Y   S L+A  ++     G+Q+H  ++        +V N
Sbjct: 241 LEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCN 300

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            L  +Y++  ++  A  +F  MN+R+ VS+N +ISG ++ G   + ++LF +MQ   L P
Sbjct: 301 GLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKP 360

Query: 256 DEVTVSNILGACFQTGR-----------------------------------IDDAGRLF 280
           D +TV+++L AC   G                                    ++ A + F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
              + ++ V W  M+V Y Q     D+  +F +M  E + P++F+  S++ +C  L +LY
Sbjct: 421 LXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALY 480

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H   +  G   ++ V S LIDMY K G    A  +   +P  +VVSW +MI GY 
Sbjct: 481 LGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYV 540

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPS 459
           Q+    EAL L++++    ++ D+  F S +SAC       +GQ  H  S +A  G   S
Sbjct: 541 QHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLS 600

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +++   +I+L  R   + +A    + +  K N++ W++L+S  A  G
Sbjct: 601 INN--ALISLYARCGRIQEAYLAFEKIGDK-NNISWNSLVSGLAQSG 644



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 226/497 (45%), Gaps = 62/497 (12%)

Query: 72  SGKLFYARDL--------FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           SG LF    L        FD  PL      ++L+  + R G       +FD+   R   S
Sbjct: 71  SGSLFETMRLHCRISKSGFDGEPLLI----DSLVDNYFRHGDQHGAVKVFDENSNRSVFS 126

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL-LDLRRGKQIHGKI 182
           +N  I  F  +  + +   +F RM  +   P  YT    L AC    +     KQ+H + 
Sbjct: 127 WNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRT 186

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  +  V N L D+Y+K G I+ A+ +F+ +  +++V+W  MISG  +NG  ++ I
Sbjct: 187 FYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAI 246

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC-----FQTG-------------------------- 271
            LF +M    + P    +S++L A      F+ G                          
Sbjct: 247 LLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALY 306

Query: 272 ----RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
               ++  A R+F  +  +D V + ++I G  Q G  + AL LF +M  + ++PD  +++
Sbjct: 307 SRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVA 366

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S++S+CA + +L+ G  +H  A+  G+  D+++  +L+D+Y KC   + A   F    T 
Sbjct: 367 SLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETE 426

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNH 446
           N+V WN M+  Y Q     ++  ++ ++  E + P+ FT+ S+L  C     L+   Q H
Sbjct: 427 NIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIH 486

Query: 447 FDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
              I         L+ Y C  +I++  +   +  A+ +++ LP + + + W+ +++    
Sbjct: 487 THVIKT----GFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIA---- 537

Query: 505 KGDIKHGEMA-ARHLFE 520
            G ++H   + A  LFE
Sbjct: 538 -GYVQHDMFSEALQLFE 553



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 183/396 (46%), Gaps = 40/396 (10%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +Q+ + M++         ++  L  C     L    ++H +I      G   + ++L D 
Sbjct: 43  IQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDN 102

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y + G+   A  +FD  +NR++ SWN MI  ++      +   LF+ M   G+ P+  T 
Sbjct: 103 YFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTF 162

Query: 261 SNILGACF------------------------------------QTGRIDDAGRLFHVIK 284
           + +L AC                                     + G I+ A ++F+ I 
Sbjct: 163 AGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCIC 222

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD V W  MI G +QNG EE+A++LF +M + ++ P  + +SSV+S+  K+     G+ 
Sbjct: 223 MKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQ 282

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H   +  G   +  V + L+ +Y +      A  +F+ M +R+ VS+NS+I+G  Q G 
Sbjct: 283 LHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGF 342

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHY 463
              AL L+ K+ ++ LKPD  T  S+LSAC       +G Q H  +I A  G++  +   
Sbjct: 343 SDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKA--GMSADIILE 400

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             +++L  + +DV+ A           N ++W+ +L
Sbjct: 401 GSLLDLYSKCADVETAHKFFLX-TETENIVLWNVML 435


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 241/691 (34%), Positives = 372/691 (53%), Gaps = 66/691 (9%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           V+L + + +   + F   +T F+ N L++ YAK G +  AR +F +M  RD++SWN L+ 
Sbjct: 173 VDLGQHVHAQ-SIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLM- 230

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
                                         AG    G   EALQ+F   +      T+ T
Sbjct: 231 ------------------------------AGLVLNGRDLEALQLFHDSRSSITMLTEST 260

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           + + +N CA L  L   +Q+H  ++         V  AL D Y K G++DKA  +F  M+
Sbjct: 261 YSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMS 320

Query: 219 -NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA----------- 266
            ++N+VSW  MI G ++NG       LF  M+  G+ P+++T S IL             
Sbjct: 321 GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHA 380

Query: 267 --------CFQT------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                   C  T               ++A  +F +I +KD V W+ M+  Y Q G    
Sbjct: 381 QVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNG 440

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDDDLLVSSALI 365
           A   F +M    ++P++F+ISS + +CA  A+ +  G+  H  ++     D L VSSAL+
Sbjct: 441 ATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALV 500

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            MY + G  ++A  VF     R+++SWNSM++GYAQ+G   +AL ++ ++  E +  D  
Sbjct: 501 SMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGL 560

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+SV+  C HA L E GQ +FD +   +GITP++DHYACM++L  R+  +D+ + LI+ 
Sbjct: 561 TFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEG 620

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P      IW  LL  C +  +++ G++AA  L  LEP+++  Y++LSN+Y+A G+W++ 
Sbjct: 621 MPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEK 680

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
             +R  M +K V+K A  SWI+I NKVH F++ D++HP +E IY +L  +  KL++ G+ 
Sbjct: 681 DEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYC 740

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+T  V HD  E++K   +  HSE+LALA+ LI  P    P+ I KN+RV GD H  MK 
Sbjct: 741 PDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPA-APLHIFKNLRVSGDGHTVMKM 799

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S+I  R I++RD  RFHHF  G CSC D W
Sbjct: 800 VSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 119/455 (26%), Positives = 209/455 (45%), Gaps = 43/455 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI    +L+  +    SV D R +F+ M  R+ V++ + + G+   G   + + +F RM+
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P  +T  S L+  A    +  G+ +H + +       VFV N+L +MYAK G ++
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVE 209

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +AR +F RM  R++VSWN +++G + NG+  + + LF + +       E T S ++  C 
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVC-WT 292
                                              + G++D A  +F ++    NV  WT
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWT 329

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS-SCAKLASLYHGQVVHGKAVV 351
            MI G  QNG    A  LF+ M  + V P+  + S++++ S A      H QV+      
Sbjct: 330 AMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTN--- 386

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
              +    V +AL+  Y K   T++A ++F M+  ++VVSW++M+  YAQ G    A   
Sbjct: 387 --YECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNA 444

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + K+    LKP+ FT  S + AC            F +IS  H    +L   + ++++  
Sbjct: 445 FIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYA 504

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           R   ++ A  + +    + + L W+++LS  A  G
Sbjct: 505 RKGSIENAQCVFERQTDR-DLLSWNSMLSGYAQHG 538



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 183/382 (47%), Gaps = 43/382 (11%)

Query: 163 LNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           +  C  + D   GKQ+H   V  G+  G++ V  +L DMY     +   R +F+ M  RN
Sbjct: 62  IKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRN 121

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------- 264
           +V+W  +++GY++ G     + LF  M+  G+ P+  T S++L                 
Sbjct: 122 VVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHA 181

Query: 265 -----GAC-------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                G C              + G +++A  +F  ++ +D V W T++ G   NG++ +
Sbjct: 182 QSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLE 241

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           AL LF++  S      + + S+V++ CA L  L   + +H   +  G      V +AL+D
Sbjct: 242 ALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMD 301

Query: 367 MYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            Y K G  D A  VF +M  ++NVVSW +MI+G  QNG    A AL+ ++ ++ + P+  
Sbjct: 302 AYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDL 361

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           T+ ++L+    ++     Q H   I   +  TP++   A M++   +    ++A+ + K 
Sbjct: 362 TYSTILTV---SEASFPPQIHAQVIKTNYECTPTVG-TALMVS-YSKLCSTEEALSIFKM 416

Query: 486 LPHKPNSLIWSTLLSVCAMKGD 507
           +  K + + WS +L+  A  GD
Sbjct: 417 IDQK-DVVSWSAMLTCYAQAGD 437



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 128/245 (52%), Gaps = 23/245 (9%)

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           D  ++F  + +++ V WT+++ GY Q G   D + LF  M +E V P+ F+ SSV+S  A
Sbjct: 109 DGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVA 168

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
               +  GQ VH +++  G    + V ++L++MY KCG+ ++A  VF  M TR++VSWN+
Sbjct: 169 SQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNT 228

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERG 443
           ++ G   NG+DLEAL L+             T+ +V++ C           LH+ + + G
Sbjct: 229 LMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHG 288

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            + + ++     +T  +D Y        ++  +DKA+D+   +    N + W+ ++  C 
Sbjct: 289 FHSYGNV-----MTALMDAY-------NKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCI 336

Query: 504 MKGDI 508
             GDI
Sbjct: 337 QNGDI 341



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 3/179 (1%)

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           ++  C  +     G+ +H   V  G D  D+ V ++L+DMY       D   VF  M  R
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           NVV+W S++ GY Q G  L+ ++L+ ++  E + P+ FTF SVLS      + + GQ H 
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ-HV 179

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            + S   G   ++     ++N+  +   V++A  +   +  + + + W+TL++   + G
Sbjct: 180 HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAGLVLNG 237


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/641 (34%), Positives = 364/641 (56%), Gaps = 36/641 (5%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           I  NALL  + + G V     +F ++  +D +S+N+ ++ +   G   EA++  S M + 
Sbjct: 301 IQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRG 360

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
            F+P     VS  +A   L  L  GK++H   +   L  +  V N L DMY K   I+ +
Sbjct: 361 GFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYS 420

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-- 268
             +FDRM  ++ +SW  +I+ Y ++ +  + +++F+E Q  G+  D + + +IL AC   
Sbjct: 421 AHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGL 480

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G +  + ++F  +++KD V WT+MI 
Sbjct: 481 ETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMIN 540

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y  +G   +AL+LF EM S DV+PD  ++ S++ +   L+SL  G+ VHG  +      
Sbjct: 541 CYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM 600

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           +  + S+L+DMY  CG    A  VFN +  +++V W +MIN    +G   +A+ L+ ++L
Sbjct: 601 EEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRML 660

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           Q  + PD  +F+++L AC H+ L   G+ + D + + + + P  +HYAC+++LLGRS   
Sbjct: 661 QTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQT 720

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A + IKS+P KP S++W +LL  C +  + +   +AA  L ELEP N G Y+++SN++
Sbjct: 721 EEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVF 780

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G+W +   +R+ +  + ++K  A SWIEI N VH F + D +H + E I  +L+++ 
Sbjct: 781 AEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEIT 840

Query: 597 KKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
           ++L +E G++ +T+ VLHD  EEEKV  +  HSE+LA+++ LI    G+ P+RI KN+RV
Sbjct: 841 ERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPGM-PLRIAKNLRV 899

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CGDCH F K  S +  R I++RD+NRFHHF GG+CSC D W
Sbjct: 900 CGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 179/633 (28%), Positives = 281/633 (44%), Gaps = 111/633 (17%)

Query: 7   LRQAIDTLYSR--GQAATEEAYTQLVLDCTRVNDVELAKRLQSH---MDLNFYEPNTTFL 61
           LRQA+  L S+  G++  +E Y   VLD        +A+ +Q H   +     E +  FL
Sbjct: 40  LRQALRLLTSQTPGRSPPQEHYG-WVLDLVAAKKA-VAQGVQVHAHAVATGSLEGDDGFL 97

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
             +LL  Y K G++  AR LFD M  R + SWNAL+ A+  SGS  +   ++  M +   
Sbjct: 98  ATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRL--- 154

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
               +A +G A                     P   T  S L A     D R G ++HG 
Sbjct: 155 ----SAASGVA---------------------PDGCTLASVLKASGVEGDGRCGCEVHGL 189

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKK 240
            V   L  + FV NAL  MYAK G +D A  +F+ M++ R++ SWN MISG L+NG   +
Sbjct: 190 AVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQ 249

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQ------------------------------- 269
            +DLF+ MQ   L+ +  T   +L  C +                               
Sbjct: 250 ALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLVM 309

Query: 270 ---TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
               GR+D A R+F  I EKD + W +M+  Y QNG   +A+   +EML    +PD   I
Sbjct: 310 YTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACI 369

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            S+ S+   L  L +G+ VH  A+   +D D  V + L+DMY KC   + +  VF+ M  
Sbjct: 370 VSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRI 429

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-----------L 435
           ++ +SW ++I  YAQ+ + +EAL ++ +  +E +K D     S+L AC           L
Sbjct: 430 KDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQL 489

Query: 436 HADLFERGQNHF---DSISAVHGITPSLDH---------------YACMINLLGRSSDVD 477
           H      G       + I  ++G    + H               +  MIN    S  ++
Sbjct: 490 HCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLN 549

Query: 478 KAVDL---IKSLPHKPNSLIWSTLLSVCA-----MKGDIKHGEMAARHLFELEPINAGPY 529
           +A+ L   ++S   +P+S+   ++L          KG   HG +  R+    E I +   
Sbjct: 550 EALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSS-- 607

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
             L +MY+ CG       + +++K K++  + A
Sbjct: 608 --LVDMYSGCGSLSGALKVFNAVKCKDMVLWTA 638



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 174/373 (46%), Gaps = 43/373 (11%)

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           F   P   S    T++     +G  R+AL++ +     R  P ++ +   L+  A    +
Sbjct: 16  FSTTPPSISPPDPTSLKQLCKEGNLRQALRLLTSQTPGRSPPQEH-YGWVLDLVAAKKAV 74

Query: 173 RRGKQIHG-KIVVGNL-GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            +G Q+H   +  G+L G + F+   L  MY K G +  AR LFD M++R + SWN +I 
Sbjct: 75  AQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIG 134

Query: 231 GYLKNGQPKKCIDLFQEMQL---LGLNPDEVTVSNIL--------GAC------------ 267
            YL +G   + + +++ M+L    G+ PD  T++++L        G C            
Sbjct: 135 AYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHG 194

Query: 268 ---------------FQTGRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILF 311
                           + G +D A R+F ++ + +D   W +MI G  QNG    AL LF
Sbjct: 195 LDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLF 254

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M    +  + ++   V+  C +LA L  G+ +H   +  G + ++   +AL+ MY KC
Sbjct: 255 RGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKC 313

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  D A  VF  +  ++ +SWNSM++ Y QNG   EA+    ++L+   +PD    VS+ 
Sbjct: 314 GRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLS 373

Query: 432 SACLHADLFERGQ 444
           SA  H      G+
Sbjct: 374 SAVGHLGWLLNGK 386



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 12/218 (5%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L  + LH YA    L             D++  N ++  +   G V     +F+ +  
Sbjct: 482 TILLAKQLHCYAIRNGLL------------DLVVKNRIIDIYGECGEVYHSLKMFETVEQ 529

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D V++ + I  +AN G   EAL +F+ MQ    +P     VS L A   L  L +GK++
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEV 589

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG ++  N      + ++L DMY+  G +  A  +F+ +  +++V W  MI+    +G  
Sbjct: 590 HGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHG 649

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           K+ IDLF+ M   G+ PD V+   +L AC  +  +++ 
Sbjct: 650 KQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEG 687


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/556 (39%), Positives = 322/556 (57%), Gaps = 37/556 (6%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +Q+H  +V      ++ + N L   YA+   ID A  LFD +  R+  +W++M+ G+ K 
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKA 79

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI----------------- 273
           G    C   F+E+   G+ PD  T+  ++  C      Q GR+                 
Sbjct: 80  GDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVC 139

Query: 274 -------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                        +DA RLF  +  KD V WT MI  Y      E +L+LF+ M  E V 
Sbjct: 140 ASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFDRMREEGVV 198

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PDK ++ +VV++CAKL +++  +  +   V  G   D+++ +A+IDMY KCG  + A  V
Sbjct: 199 PDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREV 258

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M  +NV+SW++MI  Y  +G+  +A+ L+  +L   + P+  TFVS+L AC HA L 
Sbjct: 259 FDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLI 318

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           E G   F+S+   H + P + HY CM++LLGR+  +D+A+ LI+++  + +  +WS LL 
Sbjct: 319 EEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLG 378

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C +   ++  E AA  L EL+P N G Y++LSN+YA  G+WE VA  R  M  + +KK 
Sbjct: 379 ACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKI 438

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
             ++WIE+DNK ++F   DR+HP+++ IYE L  LIKKL+ AG+ P+T  VL D +EE K
Sbjct: 439 PGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVK 498

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + +  HSEKLA+A+ LI  P G  PIRI KN+RVCGDCH F K  S I+ R+II+RD+N
Sbjct: 499 QEMLYTHSEKLAIAFGLIAIPEG-EPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDAN 557

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  G CSC D W
Sbjct: 558 RFHHFNDGTCSCGDYW 573



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 166/349 (47%), Gaps = 38/349 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L+D++  N LL  +A+  ++ D  +LFD + +RDS +++  + GFA  G        F  
Sbjct: 32  LQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAGDHAGCYATFRE 91

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + +    P +YT    +  C    DL+ G+ IH  ++   L  + FV  +L DMYAK   
Sbjct: 92  LLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIV 151

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A+ LF+RM +++LV+W +MI  Y  +    + + LF  M+  G+ PD+V +  ++ A
Sbjct: 152 VEDAQRLFERMLSKDLVTWTVMIGAY-ADCNAYESLVLFDRMREEGVVPDKVAMVTVVNA 210

Query: 267 C-----------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G ++ A  +F  +KEK+ + W
Sbjct: 211 CAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISW 270

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAV 350
           + MI  Y  +G+ +DA+ LF+ MLS  + P++ +  S++ +C+    +  G +  +    
Sbjct: 271 SAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWE 330

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMING 398
              V  D+   + ++D+  + G  D+A  +   M   ++   W++++  
Sbjct: 331 EHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGA 379



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 9/244 (3%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           +L+  +A+   V+D + LF++M  +D V++   I  +A+   + E+L +F RM+++   P
Sbjct: 141 SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVVP 199

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                V+ +NACA+L  + R +  +  IV      +V +  A+ DMYAK G ++ AR +F
Sbjct: 200 DKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVF 259

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           DRM  +N++SW+ MI+ Y  +G+ K  IDLF  M    + P+ VT  ++L AC   G I+
Sbjct: 260 DRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIE 319

Query: 275 DAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
           +  R F+ + E+  V      +T M+    + G+ ++AL L   M    V  D+   S++
Sbjct: 320 EGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAM---TVEKDERLWSAL 376

Query: 330 VSSC 333
           + +C
Sbjct: 377 LGAC 380



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 61/264 (23%), Positives = 114/264 (43%), Gaps = 45/264 (17%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +++H + VH   V  G   DL++++ L+  Y +    DDA+++F+ +  R+  +W+ M+ 
Sbjct: 15  NVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVG 74

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           G+A+ G      A + +LL+  + PD++T   V+  C      + G+   D +   HG+ 
Sbjct: 75  GFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLK-HGLL 133

Query: 458 PSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHK-------------------------- 489
              DH+ C  ++++  +   V+ A  L + +  K                          
Sbjct: 134 S--DHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESLVLFDR 191

Query: 490 -------PNSLIWSTLLSVCAMKGDIKHGEMA----ARHLFELEPINAGPYIMLSNMYAA 538
                  P+ +   T+++ CA  G +     A     R+ F L+ I     I   +MYA 
Sbjct: 192 MREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMI---DMYAK 248

Query: 539 CGRWEDVASIRSSMKSKNVKKFAA 562
           CG  E    +   MK KNV  ++A
Sbjct: 249 CGSVESAREVFDRMKEKNVISWSA 272



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/247 (21%), Positives = 104/247 (42%), Gaps = 37/247 (14%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D +   G    + A   +V  C ++  +  A+    ++  N +  +   L   ++  YAK
Sbjct: 190 DRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDV-ILGTAMIDMYAK 248

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTA 127
            G +  AR++FD+M  +++ISW+A+++A+   G  +D   LF  M     + + V++ + 
Sbjct: 249 CGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSL 308

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA----------LNACAQLLD------ 171
           +   ++ G   E L+ F+ M ++     D  H +           L+   +L++      
Sbjct: 309 LYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEK 368

Query: 172 -------LRRGKQIHGKIVVGNLGGNVFVR---------NALTDMYAKGGEIDKARWLFD 215
                  L    +IH K+ +     N  +            L+++YAK G+ +K     D
Sbjct: 369 DERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRD 428

Query: 216 RMNNRNL 222
            M  R L
Sbjct: 429 MMTQRKL 435


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/674 (34%), Positives = 367/674 (54%), Gaps = 44/674 (6%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LL   A    L   R +  ++  R +    I+  AL + + +     D R +FD+MP RD
Sbjct: 22  LLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRD 81

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRF--EPTDYTHVSALNACAQLLDLRRGKQI 178
            V++N  +AG+A  G    A++   RMQ +     P   T VS L ACA    L   +++
Sbjct: 82  RVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREV 141

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L   V V  A+ D Y K G ++ AR +FD M  RN VSWN MI GY  NG  
Sbjct: 142 HAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNA 201

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI--------------- 283
            + + LF  M   G++  + +V   L AC + G +D+  R+  ++               
Sbjct: 202 TEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNAL 261

Query: 284 ---------------------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                                 +K  + W  MI+G+TQN   EDA  LF  M  E+VRPD
Sbjct: 262 ITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPD 321

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
            F++ SV+ + A ++     + +HG ++   +D D+ V +ALIDMY KCG    A  +F+
Sbjct: 322 SFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFD 381

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
               R+V++WN+MI+GY  +G    A+ L++++      P+  TF+SVL+AC HA L + 
Sbjct: 382 SARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDE 441

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           GQ +F S+   +G+ P ++HY  M++LLGR+  +D+A   IK++P +P   ++  +L  C
Sbjct: 442 GQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGAC 501

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  +++  E +A+ +FEL P     +++L+N+YA    W+DVA +R++M+ K ++K   
Sbjct: 502 KLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPG 561

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
           +S I++ N+VH F S    H   + IY  L+KLI+++++ G+ P+T  + HD +++ K +
Sbjct: 562 WSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQ 620

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLA+AY LI+   G T I+I KN+RVC DCH   K  S + GR II+RD  RF
Sbjct: 621 LLNTHSEKLAIAYGLIRTAPGTT-IQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRF 679

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G CSC D W
Sbjct: 680 HHFKDGKCSCGDYW 693



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 195/449 (43%), Gaps = 84/449 (18%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  + L  CA   DL  G+ +H ++    L        AL +MY K      AR +
Sbjct: 14  PVLRTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRV 73

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ--LLGLNPDEVTVSNILGACF--- 268
           FDRM +R+ V+WN +++GY +NG P   ++    MQ    G  PD VT+ ++L AC    
Sbjct: 74  FDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADAR 133

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G ++ A  +F  +  +++V W  MI 
Sbjct: 134 ALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMID 193

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY  NG   +A+ LF  M+ E V     S+ + + +C +L  L   + VH   V +G+  
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-VSWNSMINGYAQNGQDLEALALYDKL 415
           ++ V++ALI  Y KC   D A  VFN +  +   +SWN+MI G+ QN    +A  L+ ++
Sbjct: 254 NVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARM 313

Query: 416 LQENLKPDSFTFVSVLSAC-----------LHA------------------DLFER---- 442
             EN++PDSFT VSV+ A            +H                   D++ +    
Sbjct: 314 QLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRV 373

Query: 443 --GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWST 497
              +  FDS    H IT     +  MI+  G       AV+L   +K     PN   + +
Sbjct: 374 SIARRLFDSARDRHVIT-----WNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLS 428

Query: 498 LLSVCAMKGDIKHGE---MAARHLFELEP 523
           +L+ C+  G +  G+    + +  + LEP
Sbjct: 429 VLAACSHAGLVDEGQKYFASMKKDYGLEP 457



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 90/212 (42%), Gaps = 27/212 (12%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL--------------HN 63
           G   T  ++  ++L  T+    E A+RL + M L    P++  L                
Sbjct: 282 GNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQA 341

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           R +H Y+        R   D+    D+    AL+  +++ G V   R LFD    R  ++
Sbjct: 342 RWIHGYS-------IRHQLDQ----DVYVLTALIDMYSKCGRVSIARRLFDSARDRHVIT 390

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  I G+ + GF + A+++F  M+     P + T +S L AC+    +  G++    + 
Sbjct: 391 WNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMK 450

Query: 184 VG-NLGGNVFVRNALTDMYAKGGEIDKARWLF 214
               L   +     + D+  + G++D+A W F
Sbjct: 451 KDYGLEPGMEHYGTMVDLLGRAGKLDEA-WSF 481


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 343/602 (56%), Gaps = 39/602 (6%)

Query: 4   KHKLRQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           K+KL +A+ +L +   RG          L+  C     +   KR+  H+ L   +   TF
Sbjct: 37  KNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTF 96

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L N L++ YAK GK   AR +FDKM  R++ SWN +LS +A+ G ++  R LFDKMP +D
Sbjct: 97  LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            VS+NT +   A  G+  EAL+ +S  ++   +   ++    L  C +L ++   +Q+HG
Sbjct: 157 VVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHG 216

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +I+V     NV + +++ D Y K G +  AR LFD M+ R++++W  M+SGY K G  K 
Sbjct: 217 QILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKS 276

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
             +LF EM                                    EK+ V WT +I GY +
Sbjct: 277 ANELFVEM-----------------------------------PEKNPVSWTALISGYAR 301

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG    AL LF +M+   VRPD+F+ SS + +CA +ASL HG+ +H   + +    + +V
Sbjct: 302 NGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIV 361

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
            SALIDMY KCG       VF++M  + +VV WN++I+  AQ+G   EA+ + D +++  
Sbjct: 362 VSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSG 421

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KPD  TFV +L+AC H+ L ++G N F+S+S  +GI PS +HYAC+I+LLGR+   ++ 
Sbjct: 422 AKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEV 481

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           +D ++ +P+KP+  +W+ LL VC + G I+ G  AA  L ELEP ++  Y++LS++YA  
Sbjct: 482 MDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVL 541

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRWE V  +R  M  + VKK  A SW+EI+NKVH F   D +HP  E IY  L +L  ++
Sbjct: 542 GRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQM 601

Query: 600 QE 601
           +E
Sbjct: 602 EE 603



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 199/434 (45%), Gaps = 71/434 (16%)

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
           AI     K    EA+     + +        T  S L  CA    LR GK++H  + +  
Sbjct: 30  AIVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTG 89

Query: 187 LG-GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           L     F+ N L +MYAK G+  +AR +FD+M+ RNL SWN M+SGY K           
Sbjct: 90  LKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAK----------- 138

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                    G I  A +LF  + EKD V W TM++ + Q G  +
Sbjct: 139 ------------------------LGMIKPARKLFDKMPEKDVVSWNTMVIAHAQCGYWD 174

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL  ++E     ++ + FS + V++ C KL  +   + VHG+ +V G   ++++SS+++
Sbjct: 175 EALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVL 234

Query: 366 DMYCKCGVTDD--------------AWT-----------------VFNMMPTRNVVSWNS 394
           D Y KCG+  D              AWT                 +F  MP +N VSW +
Sbjct: 235 DAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTA 294

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I+GYA+NG   +AL L+ K++  +++PD FTF S L AC      + G+     +  ++
Sbjct: 295 LISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRIN 354

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
              P+    + +I++  +   +     +   + +K + ++W+T++S  A  G    GE A
Sbjct: 355 -FQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHG---CGEEA 410

Query: 515 ARHLFELEPINAGP 528
            + L ++    A P
Sbjct: 411 IQMLDDMVRSGAKP 424


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/578 (38%), Positives = 339/578 (58%), Gaps = 37/578 (6%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P ++T    + AC+ L     G +IH  +V       VF+ N+L  MY K  + + +R 
Sbjct: 7   QPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQ 66

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-- 270
           +FD M ++N VSW+ +I   L++ + K+   LF++M   G  P    + N + AC ++  
Sbjct: 67  VFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-ACVRSHE 125

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          GR++ A +LF  I  KD V W T I  Y 
Sbjct: 126 EADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYV 185

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           +     +AL L  +M+ + + PD  ++  V+ +C+ LAS     +VHG        + LL
Sbjct: 186 KADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLL 245

Query: 360 -VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V +ALID+Y KCG    A  VF+ M  RN+++W++MI+GY  +G   EAL L+D++ + 
Sbjct: 246 AVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KA 304

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           ++KPD  TFVS+LSAC H+ L   G   F+S++   G+TP  +HYACM+++LGR+  +D+
Sbjct: 305 SVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDE 364

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A D I+ +P +PN+ +W  LL  C +  ++   EM AR LF+L+P NAG Y++L N+Y  
Sbjct: 365 ACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYNIYTL 424

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+ ++  SIR+ MK++ VKK A YS IEI NK++ FV+ DR+HP+T++IY EL +L+ +
Sbjct: 425 TGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELERLMDR 484

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G++P+   VLHD  EE K   +  HSEKLA+ + L+    G + IRI KN+RVCGD
Sbjct: 485 IRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPG-SVIRIRKNLRVCGD 543

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S + GR I++RD++RFHHF  G CSC+D W
Sbjct: 544 CHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 178/409 (43%), Gaps = 76/409 (18%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDL-NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           ++  C+ +   E   R+  H D+  F   +  F+ N L+  Y K  K   +R +FD+MP 
Sbjct: 16  IIKACSCLRHFEFGIRI--HQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPD 73

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           ++ +SW+A++ A      +QD R                           +E   +F +M
Sbjct: 74  KNAVSWSAIIGA-----CLQDDRC--------------------------KEGFSLFRQM 102

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             +   P   +  + LNA A +        ++  +V   L  +  V++A   M+A+ G +
Sbjct: 103 LSEGSRP---SRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRV 159

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR LFD + +++LV+W   I  Y+K   P + + L ++M L G+ PD +T+  ++ AC
Sbjct: 160 EVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRAC 219

Query: 268 -----FQ-------------------------------TGRIDDAGRLFHVIKEKDNVCW 291
                FQ                                G +  A ++F  ++E++ + W
Sbjct: 220 STLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITW 279

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAV 350
           + MI GY  +G   +AL LF++M    V+PD  +  S++S+C+    +  G +  +  A 
Sbjct: 280 SAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMAR 338

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
             GV       + ++D+  + G  D+A      MP R N   W +++  
Sbjct: 339 DFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/239 (28%), Positives = 114/239 (47%), Gaps = 10/239 (4%)

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
           AR G V+  R LFD +  +D V++ T I  +       EAL +  +M      P   T +
Sbjct: 154 ARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLL 213

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVF-VRNALTDMYAKGGEIDKARWLFDRMNN 219
             + AC+ L   +    +HG I  G     +  V  AL D+Y K G +  AR +FD M  
Sbjct: 214 GVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQE 273

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
           RN+++W+ MISGY  +G  ++ ++LF +M+   + PD +T  +IL AC  +G + +    
Sbjct: 274 RNIITWSAMISGYGMHGWGREALNLFDQMK-ASVKPDHITFVSILSACSHSGLVAEGWEC 332

Query: 280 FHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           F+ +     V      +  M+    + GK ++A      M    VRP+     +++ +C
Sbjct: 333 FNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERM---PVRPNAAVWGALLGAC 388



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML   ++PD F+   ++ +C+ L     G  +H   V  G    + +S++LI MY KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + +  VF+ MP +N VSW+++I    Q+ +  E  +L+ ++L E  +P     ++ + A
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM-A 119

Query: 434 CLHA 437
           C+ +
Sbjct: 120 CVRS 123


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 364/636 (57%), Gaps = 48/636 (7%)

Query: 107 QDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           Q+L  LF++   + D  S+N+ IA  A  G S EAL  FS M+K    PT  +   A+ A
Sbjct: 26  QNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           C+ L D+  GKQ H +  V     ++FV +AL  MY+  G+++ AR +FD +  RN+VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSW 145

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQT-------- 270
             MI GY  NG     + LF+++ L+  N D+       + + +++ AC +         
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDL-LVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES 204

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +  A ++F  I +KD V + +++  Y Q+
Sbjct: 205 IHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQS 264

Query: 302 GKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G   +A  +F  ++   V   +  ++S+V+ + +   +L  G+ +H + + +G++DD++V
Sbjct: 265 GMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIV 324

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +++IDMYCKCG  + A   F+ M  +NV SW +MI GY  +G   +AL L+  ++   +
Sbjct: 325 GTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  TFVSVL+AC HA L   G   F+++    G+ P L+HY CM++LLGR+  + KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +  KP+S+IWS+LL+ C +  +++  E++   LFEL+  N G Y++LS++YA  G
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DV  +R  MK++ + K   +S +E++ +VH F+  D  HP+ E IYE L++L +KL 
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLL 564

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAG+  NT  V HD  EEEK  ++  HSEKLA+A+ ++    G T + ++KN+RVC DCH
Sbjct: 565 EAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGST-VNVVKNLRVCSDCH 623

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I+ R  ++RD+ RFHHF  G CSC D W
Sbjct: 624 NVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 88  RDIISWNALLSAHARSG--SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           R +   N LL A+A+ G   V   R +FD++  +D VSYN+ ++ +A  G S EA +VF 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 146 RMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           R+ K++    +   +S  L A +    LR GK IH +++   L  +V V  ++ DMY K 
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ++ AR  FDRM N+N+ SW  MI+GY  +G   K ++LF  M   G+ P+ +T  ++L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G   +  R F+ +K +  V      +  M+    + G  + A  L   M    +
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM---KM 452

Query: 320 RPDKFSISSVVSSC 333
           +PD    SS++++C
Sbjct: 453 KPDSIIWSSLLAAC 466



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/456 (22%), Positives = 189/456 (41%), Gaps = 107/456 (23%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T  ++   +  C+ + D+   K+      +  Y+ +  F+ + L+  Y+  GKL  AR +
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDI-FVSSALIVMYSTCGKLEDARKV 133

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD++P R+I+SW +++  +  +G+  D  +LF  + + ++                    
Sbjct: 134 FDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEN-------------------- 173

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
                   D         VS ++AC+++      + IH  ++       V V N L D Y
Sbjct: 174 -----DDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAY 228

Query: 202 AKGGE--IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ------------- 246
           AKGGE  +  AR +FD++ +++ VS+N ++S Y ++G   +  ++F+             
Sbjct: 229 AKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI 288

Query: 247 -----------------------EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
                                  ++  +GL  D +  ++I+    + GR++ A + F  +
Sbjct: 289 TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           K K+   WT MI GY  +G    AL LF  M+   VRP+  +  SV+++C+         
Sbjct: 349 KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS--------- 399

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMING 398
                                       G+  + W  FN M  R  V      +  M++ 
Sbjct: 400 --------------------------HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             + G   +A   YD + +  +KPDS  + S+L+AC
Sbjct: 434 LGRAGFLQKA---YDLIQRMKMKPDSIIWSSLLAAC 466



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 76/340 (22%)

Query: 18  GQAATEEAYTQLVLDCTRVN-DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA------ 70
           G A   + + Q+V D  RV+ +  ++   QS M    +E     + N+++ F A      
Sbjct: 235 GVAVARKIFDQIV-DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTV 293

Query: 71  -----KSGKLFYARDLFD---KMPLRD-IISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
                 SG L   + + D   +M L D +I   +++  + + G V+  R  FD+M  ++ 
Sbjct: 294 LLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNV 353

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
            S+   IAG+   G + +AL++F  M      P   T VS L AC+              
Sbjct: 354 RSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH------------- 400

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-----NLVSWNLMISGYLKNG 236
                                 G  ++  RW F+ M  R      L  +  M+    + G
Sbjct: 401 ---------------------AGLHVEGWRW-FNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA----GRLFHVIKEKDNVCWT 292
             +K  DL Q M+   + PD +  S++L AC     ++ A     RLF +     + C  
Sbjct: 439 FLQKAYDLIQRMK---MKPDSIIWSSLLAACRIHKNVELAEISVARLFEL---DSSNCGY 492

Query: 293 TMIVG--YTQNGKEEDA----LILFNEMLSEDVRPDKFSI 326
            M++   Y   G+ +D     +I+ N  L   V+P  FS+
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGL---VKPPGFSL 529


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/614 (37%), Positives = 351/614 (57%), Gaps = 43/614 (7%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           S S +  +    + G  +EAL   + + ++ +FE  D    S LN C     +R G+++H
Sbjct: 30  SFSPSPNLKTLCSSGQLKEALLQMAILGREVKFEGYD----SILNECVSQRAIREGQRVH 85

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             ++      +V++R  L  +Y K   +  AR +FD M  RN+VSW  MIS Y + G   
Sbjct: 86  THMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAF 145

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------------- 268
           + ++LF EM      P+  T + IL +C+                               
Sbjct: 146 EALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL 205

Query: 269 ----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               ++GRI DA  +FH + E+D V  T +I GY Q G +E+AL LF ++  E +  +  
Sbjct: 206 DMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSV 265

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + +SV+++ + LA+L HG+ VH   +  G    +++ ++LIDMY KCG    A  +F+ M
Sbjct: 266 TYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSM 325

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERG 443
           P R  +SWN+M+ GY+++G   E L L+  + +EN +KPDS T+++VLS C H  L + G
Sbjct: 326 PERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMG 385

Query: 444 -QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            +  ++ ++   GI P + HY C+++LLGR+  V++A D IK +P  P + IW +LL  C
Sbjct: 386 LEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSC 445

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  D++ G +  + L ELEP NAG Y++LSN+YA+ G+WED+ +IR  M+ K V K   
Sbjct: 446 RVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPG 505

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SW+E+D  VH F + D THP  E +  ++ +L  K +E G+ P+   VL+D  EE+K K
Sbjct: 506 RSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEK 565

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLALA+ LI  P G T IR++KN+R+C DCH F KF S +  RT+ILRD NRF
Sbjct: 566 VLLGHSEKLALAFGLIATPEGTT-IRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRF 624

Query: 683 HHFVGGNCSCKDNW 696
           H+ VGG CSC D W
Sbjct: 625 HNIVGGVCSCGDYW 638



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 215/476 (45%), Gaps = 93/476 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L++A+  +   G+    E Y  ++ +C     +   +R+ +HM    Y P + +L  RL
Sbjct: 45  QLKEALLQMAILGREVKFEGYDSILNECVSQRAIREGQRVHTHMIKTCYLP-SVYLRTRL 103

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y K   L                                D R +FD+MP R+ VS+ 
Sbjct: 104 IVLYNKCDCL-------------------------------GDARGMFDEMPQRNVVSWT 132

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I+ ++ +GF+ EAL +F  M +   EP  +T  + L +C   L    G+QIH   +  
Sbjct: 133 AMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKR 192

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   ++FV ++L DMYAK G I  A  +F  +  R++V+   +ISGY + G  ++ + LF
Sbjct: 193 NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLF 252

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           +++Q+ G+N + VT +++L A                                     + 
Sbjct: 253 RQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKC 312

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSV 329
           G +  A R+F  + E+  + W  M+VGY+++G   + L LF  M  E+ V+PD  +  +V
Sbjct: 313 GNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAV 372

Query: 330 VSSCAKLASLYHGQV-----------VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +S C+      HGQ+           V+GK    G++ D+     ++D+  + G  ++A+
Sbjct: 373 LSGCS------HGQLEDMGLEIFYNMVNGKD---GIEPDIGHYGCVVDLLGRAGRVEEAF 423

Query: 379 TVFNMMP-TRNVVSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPDSFTFVSVLS 432
                MP       W S++ G  +   D+E  + +  KLL+  L+P++     +LS
Sbjct: 424 DFIKKMPFVPTAAIWGSLL-GSCRVHSDVEIGIIVGQKLLE--LEPENAGNYVILS 476


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/637 (36%), Positives = 353/637 (55%), Gaps = 35/637 (5%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL++A++  GSV   R++F+ +  +D V +   ++ +   G   ++LQ+ SRM  D F P
Sbjct: 186 ALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMP 245

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            +YT  +AL A   L      K +HG+I+      +  V   L  +Y + G++  A  +F
Sbjct: 246 NNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------ 268
           + M   ++V W+ MI+ + +NG   K +D+F  M+   + P+E T+S+IL  C       
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSG 365

Query: 269 -----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        +  ++D A +LF  +  K+ V W T+IVGY 
Sbjct: 366 LGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYE 425

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
             G+   AL +F E L   V   + + SS + +CA LAS+  G  VHG A+       + 
Sbjct: 426 NLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVA 485

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           VS++LIDMY KCG    A TVFN M T +V SWN++I+GY+ +G   +AL ++D +   +
Sbjct: 486 VSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSD 545

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KP+  TF+ VLS C +A L ++GQ+ F+S+   HGI P L+HY CM+ L GRS  +DKA
Sbjct: 546 CKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKA 605

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           ++LI+ +P++P+ +IW  +LS    + + +    +A  + ++ P +   Y++LSNMYA  
Sbjct: 606 MNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGA 665

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
            +W +VASIR SMK K VKK    SWIE    VH F      HP+ ++I   L  L  K 
Sbjct: 666 KQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKA 725

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
             AG+ P+   VL D  +EEK K +  HSE+LALAY L++ P     I IMKN+R+C DC
Sbjct: 726 TRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDC 785

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  MK  S I+ R +++RD NRFHHF  G CSC D+W
Sbjct: 786 HSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/508 (26%), Positives = 226/508 (44%), Gaps = 86/508 (16%)

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           D+  K    D+ + N LL+A+ ++G  +D   LFD+MP R++VSY T   G+A     ++
Sbjct: 74  DILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQD 129

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
            + ++SR+ ++  E   +   S L     L        +H  IV      N FV  AL +
Sbjct: 130 PVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALIN 189

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
            Y+  G +D AR +F+ +  +++V W  ++S Y++NG  +  + L   M + G  P+  T
Sbjct: 190 AYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYT 249

Query: 260 V--------------------SNILGACF---------------QTGRIDDAGRLFHVIK 284
                                  IL  C+               Q G + DA ++F+ + 
Sbjct: 250 FDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           + D V W+ MI  + QNG    A+ +F  M    V P++F++SS+++ CA       G+ 
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQ 369

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  V +G D D+ VS+ALID+Y KC   D A  +F  + ++NVVSWN++I GY   G+
Sbjct: 370 LHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGE 429

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             +AL ++ + L+  +     TF S L AC      E G         VHG+    ++  
Sbjct: 430 GGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQ-------VHGLAIKTNNAK 482

Query: 465 ------CMINLLGRSSDVDKA----------------------------------VDLIK 484
                  +I++  +  D+  A                                   D++K
Sbjct: 483 RVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMK 542

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
               KPN L +  +LS C+  G I  G+
Sbjct: 543 GSDCKPNGLTFLGVLSGCSNAGLIDQGQ 570



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 30/198 (15%)

Query: 316 SEDVRP--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           S+ V P  D  +  +++  C +       + +H   +  G   DL  ++ L++ Y K G 
Sbjct: 40  SDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGF 99

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--LKPDSFT----- 426
             DA  +F+ MP RN VS+ ++  GYA      + + LY +L +E   L P  FT     
Sbjct: 100 DKDALNLFDEMPERNNVSYVTLTQGYACQ----DPVGLYSRLHREGHELNPHVFTSFLKL 155

Query: 427 FVSVLSA--C--LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           FVS+  A  C  LH+ + + G   +DS + V          A +IN       VD A  +
Sbjct: 156 FVSLDKAEICWWLHSPIVKLG---YDSNAFVG---------AALINAYSVCGSVDSARSV 203

Query: 483 IKSLPHKPNSLIWSTLLS 500
            + +  K + ++W+ ++S
Sbjct: 204 FEGILCK-DIVVWAGIVS 220


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/665 (33%), Positives = 361/665 (54%), Gaps = 71/665 (10%)

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHV 160
           R     D R +FD+ P R +  +   I+G A +G   + ++ F+ M  +    P  +   
Sbjct: 57  RRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLA 116

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           + +  CA + D+  GK++HG ++   +  +V + NA+ DMYAK G+ ++AR +F  M  R
Sbjct: 117 AVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAER 176

Query: 221 NLVSWNL-------------------------------MISGYLKNGQPKKCIDLFQEMQ 249
           + VSWN+                               +ISG +++G     +   + M 
Sbjct: 177 DAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMA 236

Query: 250 LLG------------------LNPD-------EVTVSNILGACF----------QTGRID 274
             G                  L PD        V ++ + G  F          + G ++
Sbjct: 237 QAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLE 296

Query: 275 DAGRLF---HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            A  +F     +    N  W+TM+ GY QNG+EE+AL LF  ML E V  D+F+++SV +
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAA 356

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA +  +  G+ VHG    L    D  ++SA++DMY KCG  +DA ++F+   T+N+  
Sbjct: 357 ACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W SM+  YA +GQ   A+ L++++  E + P+  T V VLSAC H  L   G+ +F  + 
Sbjct: 417 WTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQ 476

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GI PS++HY C+++L GRS  +DKA + I+       +++W TLLS C +    ++ 
Sbjct: 477 EEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYA 536

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           ++A+  L +LE  +AG Y+MLSN+YA   +W D   +R SM+ + V+K    SWI + N 
Sbjct: 537 KLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNT 596

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
           VH FV+ D +HP++  IY  L KL+++L+E G++  T LV+HD ++E++  ++ +HSEKL
Sbjct: 597 VHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKL 656

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A+A+ +I  P G TP+RI KN+RVC DCH  +K+ S   GR I++RD  RFHHF   +CS
Sbjct: 657 AIAFGIISTPSG-TPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCS 715

Query: 692 CKDNW 696
           C+D W
Sbjct: 716 CEDFW 720



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 130/476 (27%), Positives = 228/476 (47%), Gaps = 61/476 (12%)

Query: 9   QAIDTLYSRGQAATEEAY--TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           +A   + + G+A T  A+    +V  C  + DVE  KR+   M  N    +   L N +L
Sbjct: 97  RAFAEMLAEGEA-TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVV-LCNAVL 154

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             YAK G+   AR +F  M  RD +SWN  + A  +SG +     LFD+ P+RD+ S+NT
Sbjct: 155 DMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNT 214

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            I+G    G + +AL    RM +       YT+ +A      LL    G+Q+HG++++  
Sbjct: 215 IISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAA 274

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMN--NRNL-VSWNLMISGYLKNGQPKKCID 243
           L G+ FVR++L DMY K G ++ A  +FD  +   R++  +W+ M++GY++NG+ ++ +D
Sbjct: 275 LEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALD 334

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----------------- 286
           LF+ M   G+  D  T++++  AC   G ++  GR  H   EK                 
Sbjct: 335 LFRRMLREGVAADRFTLTSVAAACANVGMVEQ-GRQVHGCVEKLWYKLDAPLASAIVDMY 393

Query: 287 -------------DNVC------WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                        D  C      WT+M+  Y  +G+   A+ LF  M +E + P++ ++ 
Sbjct: 394 AKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLV 453

Query: 328 SVVSSCAKL-----ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
            V+S+C+ +       LY  Q+     +V  ++      + ++D+Y + G+ D A    N
Sbjct: 454 GVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEH----YNCIVDLYGRSGLLDKA---KN 506

Query: 383 MMPTRNV----VSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSA 433
            +   N+    + W ++++    +  +  A    +KL+Q E     S+  +S + A
Sbjct: 507 FIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYA 562



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/460 (25%), Positives = 205/460 (44%), Gaps = 84/460 (18%)

Query: 58  TTFLHNR--LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
            T  H R  +L F+ +  +   AR +FD+ P R    W   +S  AR G   D    F +
Sbjct: 42  ATVPHERASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAE 101

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           M                              + +    P  +   + +  CA + D+  G
Sbjct: 102 M------------------------------LAEGEATPNAFVLAAVVRCCAGMGDVESG 131

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K++HG ++   +  +V + NA+ DMYAK G+ ++AR +F  M  R+ VSWN+ I   +++
Sbjct: 132 KRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQS 191

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
           G      D+   MQL   +P                              +D   W T+I
Sbjct: 192 G------DILGSMQLFDESP-----------------------------LRDTTSWNTII 216

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G  ++G   DAL     M    V  + ++ S+       L     G+ +HG+ ++  ++
Sbjct: 217 SGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALE 276

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNV-VSWNSMINGYAQNGQDLEALALY 412
            D  V S+L+DMYCKCG+ + A +VF+     TR++  +W++M+ GY QNG++ EAL L+
Sbjct: 277 GDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLF 336

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH------YACM 466
            ++L+E +  D FT  SV +AC +  + E+G+        VHG    L +       + +
Sbjct: 337 RRMLREGVAADRFTLTSVAAACANVGMVEQGRQ-------VHGCVEKLWYKLDAPLASAI 389

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +++  +  +++ A  +      K N  +W+++L   A  G
Sbjct: 390 VDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLCSYASHG 428


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 334/571 (58%), Gaps = 39/571 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  C  L  L  GK IH  ++      ++ ++N L ++YAK G++  AR LFD M++R++
Sbjct: 22  LKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDV 81

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL------------------ 264
           V+W  +I+GY ++ +P+  + L  EM  +GL P++ T++++L                  
Sbjct: 82  VTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLH 141

Query: 265 GACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
           G C + G                    +++A  +F V+  K+ V W  +I GY + G+ +
Sbjct: 142 GLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGD 201

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
            A  LF+ ML E+V+P  F+ SSV+ +CA + SL  G+ VH   +  G      V + L+
Sbjct: 202 KAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLL 261

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY K G  +DA  VF+ +  R+VVSWNSM+ GY+Q+G    AL  ++++L+  + P+  
Sbjct: 262 DMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDI 321

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+ VL+AC HA L + G+++FD +   + + P + HY  M++LLGR+  +D+A+  I  
Sbjct: 322 TFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISE 380

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP + +W  LL  C M  +++ G  AA  +FEL+    G +++L N+YA  GRW D 
Sbjct: 381 MPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWNDA 440

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R  MK   VKK  A SW+E++N+VH FV++D  HP+   I+    ++  K++E G+ 
Sbjct: 441 AKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIGYV 500

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P++  VL    ++E+   + YHSEKLALA+ L+  P G T IRI KNIR+CGDCH   KF
Sbjct: 501 PDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGST-IRIKKNIRICGDCHSAFKF 559

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S ++ R II+RD+NRFHHF  G CSC+D W
Sbjct: 560 VSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 187/420 (44%), Gaps = 70/420 (16%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           +  A   E    L+  CT +N +   K + + + LN    +   + N LL+ YAK G L 
Sbjct: 9   KNNAGAREICHTLLKRCTHLNKLNEGKIIHALL-LNSRFRDDLVMQNTLLNLYAKCGDLV 67

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           YAR LFD+M  RD+++W AL++ +++    QD                            
Sbjct: 68  YARKLFDEMSSRDVVTWTALITGYSQHDRPQD---------------------------- 99

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGGNVFVR 194
              AL +   M +   +P  +T  S L A + +   D+ +G+Q+HG  +      NV+V 
Sbjct: 100 ---ALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVS 156

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            A+ DMYA+   +++A+ +FD M ++N VSWN +I+GY + GQ  K   LF  M    + 
Sbjct: 157 CAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVK 216

Query: 255 PDEVTVSNILGAC-----------------------------------FQTGRIDDAGRL 279
           P   T S++L AC                                    ++G I+DA ++
Sbjct: 217 PTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKV 276

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  + ++D V W +M+ GY+Q+G  + AL  F EML   + P+  +   V+++C+    L
Sbjct: 277 FDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLL 336

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
             G+          V+  +     ++D+  + G  D A    + MP +   + W +++  
Sbjct: 337 DEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGA 396



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 159/313 (50%), Gaps = 15/313 (4%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           A+L  +AR   +++ + +FD M  ++ VS+N  IAG+A KG   +A  +FS M ++  +P
Sbjct: 158 AILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKP 217

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           T +T+ S L ACA +  L +GK +H  ++        FV N L DMYAK G I+ A+ +F
Sbjct: 218 THFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVF 277

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           DR+  R++VSWN M++GY ++G  K  +  F+EM    + P+++T   +L AC   G +D
Sbjct: 278 DRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLD 337

Query: 275 DAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           +    F ++K    E     + TM+    + G  + A+   +EM    ++P      +++
Sbjct: 338 EGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEM---PIKPTAAVWGALL 394

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTDDAWTVFNMMPTRNV 389
            +C    ++  G   +    +  +D     +  L+ ++Y   G  +DA  V  MM    V
Sbjct: 395 GACRMHKNMELGG--YAAECIFELDSHYPGTHVLLYNIYALAGRWNDAAKVRKMMKESGV 452

Query: 390 -----VSWNSMIN 397
                 SW  M N
Sbjct: 453 KKEPACSWVEMEN 465



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 119/266 (44%), Gaps = 36/266 (13%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           +++  C  L  L  G+++H   +     DDL++ + L+++Y KCG    A  +F+ M +R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL---HADLFERGQ 444
           +VV+W ++I GY+Q+ +  +AL L  ++L+  LKP+ FT  S+L A       D+ +  Q
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 445 NH-----FDSISAVHGITPSLDHYA------------------------CMINLLGRSSD 475
            H     +   S V+     LD YA                         +I    R   
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 476 VDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL-EPINAGPYIM 531
            DKA  L  ++     KP    +S++L  CA  G ++ G+     + +  E + A     
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNV 557
           L +MYA  G  ED   +   +  ++V
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDV 285


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/689 (35%), Positives = 376/689 (54%), Gaps = 87/689 (12%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           N L+S + R G+ ++ R +FD+M  R   D VS+N+ +A +   G S  A+++F RM +D
Sbjct: 165 NGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED 224

Query: 151 -RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
               P   + V+ L ACA +    RGKQ+HG  +   L  +VFV NA+ DMYAK G +++
Sbjct: 225 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEE 284

Query: 210 ARWLFDRMNNRNLVSWNLM-----------------------------------ISGYLK 234
           A  +F+RM  +++VSWN M                                   I+GY +
Sbjct: 285 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 344

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI--------------------- 273
            G   + +D+F++M+L G  P+ VT+ ++L  C   G +                     
Sbjct: 345 RGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDEND 404

Query: 274 --DD-------------------AGRLFHVIKEKDN--VCWTTMIVGYTQNGKEEDALIL 310
             DD                   A  +F +I  KD   V WT +I G  Q+G+  +AL L
Sbjct: 405 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 464

Query: 311 FNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDM 367
           F++ML  D  V P+ F+IS  + +CA+L +L  G+ +H   +    +  +L V++ LIDM
Sbjct: 465 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 524

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y K G  D A  VF+ M  RN VSW S++ GY  +G+  EAL ++ ++ +  L PD  TF
Sbjct: 525 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTF 584

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           V VL AC H+ + ++G N+F+ ++   G+ P  +HYACM++LL R+  +D+A++LI+ +P
Sbjct: 585 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 644

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            KP   +W  LLS C +  +++ GE AA  L ELE  N G Y +LSN+YA    W+DVA 
Sbjct: 645 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 704

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           IR  MK+  +KK    SW++       F + D +HP ++ IY+ L  L+++++  G+ P+
Sbjct: 705 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 764

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            +  LHD  +EEK   +  HSEKLALAY ++    G  PIRI KN+R CGDCH    + S
Sbjct: 765 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPG-APIRITKNLRACGDCHSAFTYIS 823

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            II   II+RDS+RFHHF  G+CSC+  W
Sbjct: 824 IIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 89/490 (18%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  I    + GF  + LQ++ RMQ+  + P  YT    L AC ++   R G  +H  + 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKK 240
                 NVFV N L  MY + G  + AR +FD M  R   +LVSWN +++ Y++ G   +
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 241 CIDLFQEM-QLLGLNPDEVTVSNILGAC-------------------------------- 267
            + +F+ M + LG+ PD V++ N+L AC                                
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 273

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV----- 319
               + G +++A ++F  +K KD V W  M+ GY+Q G+ +DAL LF ++  E +     
Sbjct: 274 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 333

Query: 320 ------------------------------RPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
                                          P+  ++ S++S CA   +L HG+  H  A
Sbjct: 334 TWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 350 V--VLGVD-----DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYA 400
           +  +L +D     DDL+V +ALIDMY KC     A  +F+++P   R+VV+W  +I G A
Sbjct: 394 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453

Query: 401 QNGQDLEALALYDKLLQEN--LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           Q+G+  EAL L+ ++LQ +  + P++FT    L AC        G+     +      + 
Sbjct: 454 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 513

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            L    C+I++  +S DVD A  +  ++ H+ N + W++L++   M G    GE A +  
Sbjct: 514 MLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMHG---RGEEALQIF 569

Query: 519 FELEPINAGP 528
           +E++ +   P
Sbjct: 570 YEMQKVGLVP 579



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 189/392 (48%), Gaps = 74/392 (18%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N ++  YAK G +  A  +F++M ++D++SWNA+++ +++ G   D   LF+K  I
Sbjct: 266 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK--I 323

Query: 119 RDS------VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           R+       V+++  IAG+A +G   EAL VF +M+    EP   T VS L+ CA    L
Sbjct: 324 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTL 383

Query: 173 RRGKQIHGKIV--VGNL-----GGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLV 223
             GK+ H   +  + NL     G ++ V NAL DMY+K      AR +FD +   +R++V
Sbjct: 384 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 443

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE------VTVSNILGACF--------- 268
           +W ++I G  ++G+  + ++LF +M    L PD        T+S  L AC          
Sbjct: 444 TWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGR 499

Query: 269 ---------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      ++G +D A  +F  + +++ V WT+++ GY  +
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 559

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+ E+AL +F EM    + PD  +   V+ +C+     + G V  G     G++ D  V 
Sbjct: 560 GRGEEALQIFYEMQKVGLVPDGVTFVVVLYACS-----HSGMVDQGINYFNGMNKDFGVV 614

Query: 362 ------SALIDMYCKCGVTDDAWTVFNMMPTR 387
                 + ++D+  + G  D+A  +   MP +
Sbjct: 615 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMK 646



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C R+  +   +++ +++  N +E    F+ N L+  Y+KSG +  AR +FD M  R+
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
            +SW +L++ +   G  ++   +F +M     + D V++   +   ++ G   + +  F+
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFN 605

Query: 146 RMQKD 150
            M KD
Sbjct: 606 GMNKD 610



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARD-----LFDKMPLRDIISWNALLSAHARSGSV 106
           NF  PN  F  +  L   A+ G L + R      L ++     +   N L+  +++SG V
Sbjct: 473 NFVMPNA-FTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDV 531

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
              R +FD M  R+ VS+ + + G+   G   EALQ+F  MQK    P   T V  L AC
Sbjct: 532 DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYAC 591

Query: 167 AQ 168
           + 
Sbjct: 592 SH 593



 Score = 45.8 bits (107), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 114/280 (40%), Gaps = 54/280 (19%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-- 384
           S++   C  LAS    +++H + +V G+  D    + +I MY        A +V   +  
Sbjct: 33  STLFHQCKSLAS---AELIHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHP 86

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---------- 434
            +  V  WN +I      G   + L LY ++ +   +PD +TF  VL AC          
Sbjct: 87  SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 146

Query: 435 -LHADLFERG--QNHF--DSISAVHGITPSLDH------------------YACMINLLG 471
            +HA +F  G   N F  + + +++G   + ++                  +  ++    
Sbjct: 147 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 206

Query: 472 RSSDVDKAVDLIKSLPH----KPNSLIWSTLLSVCA-----MKGDIKHGEMAARHLFELE 522
           +  D  +A+ + + +      +P+++    +L  CA      +G   HG      LF  E
Sbjct: 207 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF--E 264

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  G  ++  +MYA CG  E+   +   MK K+V  + A
Sbjct: 265 DVFVGNAVV--DMYAKCGMMEEANKVFERMKVKDVVSWNA 302


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/649 (36%), Positives = 364/649 (56%), Gaps = 53/649 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA-NKGFSREALQVFSRMQKDRF 152
            AL+  +A+ G + D + +FDKM  RD V++N+ I+GF+ ++G   E  ++  +MQ D  
Sbjct: 158 TALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-V 216

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T V  L A AQ+  LR GK+IHG  V     G+V V   + D+Y K   ID AR 
Sbjct: 217 SPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARR 276

Query: 213 LFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL------- 264
           +FD M   +N V+W+ M+  Y+     ++ ++LF   QLL L  D + +S +        
Sbjct: 277 IFDMMGIVKNEVTWSAMVGAYVVCDFMREALELF--CQLLMLKDDVIVLSAVTLATVIRV 334

Query: 265 ---------GACF------------------------QTGRIDDAGRLFHVIKEKDNVCW 291
                    G C                         + G I+ A R F+ +  +D V +
Sbjct: 335 CANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSF 394

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T +I GY QNG  E+ L +F EM    + P+K +++SV+ +CA LA L++G   H  A++
Sbjct: 395 TAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAII 454

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G   D ++ +ALIDMY KCG  D A  VF+ M  R +VSWN+MI  Y  +G  LEAL L
Sbjct: 455 CGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLL 514

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +D +  E LKPD  TF+ ++SAC H+ L   G+  F++++   GI P ++HYACM++LL 
Sbjct: 515 FDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLS 574

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+    +    I+ +P +P+  +W  LLS C +  +++ GE  ++ + +L P + G +++
Sbjct: 575 RAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVL 634

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYE 590
           LSNMY+A GRW+D A +R + K +  +K    SWIEI   VH F+    R+HP+   I  
Sbjct: 635 LSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISN 694

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP---I 647
           +L +L+ +++  G+   +  V  D +EEEK + + YHSEKLA+A+ ++     ++P   I
Sbjct: 695 KLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILS----LSPDKHI 750

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + KN+RVCGDCH  +KF S +  R I +RD++RFHHF  G C+C D W
Sbjct: 751 IVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/535 (27%), Positives = 241/535 (45%), Gaps = 90/535 (16%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN------RLLHFYAKSGKLFY 77
           E  T L+  C +   +   K +  H+    +  + T L N      +L+  Y    +L  
Sbjct: 10  EYCTVLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPFEKLVDLYIACSELKI 69

Query: 78  ARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           AR +FDKMP R  +++ WN L+ A+A +G  +                            
Sbjct: 70  ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYE---------------------------- 101

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              EA+ ++ +M      P  +T    L AC+ L +   G++IH  I    L  NV+V  
Sbjct: 102 ---EAIDLYYKMLGYGITPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVST 158

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY-LKNGQPKKCIDLFQEMQ----- 249
           AL D YAK G +D A+ +FD+M+ R++V+WN MISG+ L  G   +   L  +MQ     
Sbjct: 159 ALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSP 218

Query: 250 ----LLGLNPDEVTVSN------ILGACFQTGRIDD-------------------AGRLF 280
               ++G+ P    V++      I G C + G + D                   A R+F
Sbjct: 219 NSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIF 278

Query: 281 HVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNE--MLSEDVRP-DKFSISSVVSSCAKL 336
            ++   K+ V W+ M+  Y       +AL LF +  ML +DV      ++++V+  CA L
Sbjct: 279 DMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANL 338

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             L  G  +H  A+  G   DL+V + L+ MY KCG+ + A   FN M  R+ VS+ ++I
Sbjct: 339 TDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAII 398

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHG 455
           +GY QNG   E L ++ ++    + P+  T  SVL AC H A L      H+ S S  + 
Sbjct: 399 SGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGL------HYGSCSHCYA 452

Query: 456 ITPSL--DHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I      D   C  +I++  +   +D A  +   + HK   + W+T++    + G
Sbjct: 453 IICGFTADTMICNALIDMYAKCGKIDTARKVFDRM-HKRGIVSWNTMIIAYGIHG 506



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 148/300 (49%), Gaps = 15/300 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  N LLS +A+ G +      F++M +RD+VS+   I+G+   G S E L++F  MQ
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ 418

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P   T  S L ACA L  L  G   H   ++     +  + NAL DMYAK G+ID
Sbjct: 419 LSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKID 478

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRM+ R +VSWN MI  Y  +G   + + LF  MQ  GL PD+VT   ++ AC 
Sbjct: 479 TARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538

Query: 269 QTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
            +G + +    F+ + +   +      +  M+   ++ G  ++      +M  E   PD 
Sbjct: 539 HSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLE---PDV 595

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTV 380
               +++S+C    ++  G+ V  K   LG +     +L+S    +MY   G  DDA  V
Sbjct: 596 RVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLS----NMYSAVGRWDDAAQV 651



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 170/356 (47%), Gaps = 51/356 (14%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D++    +L  + +   +   R +FD M I ++ V+++  +  +    F REAL++F ++
Sbjct: 254 DVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQL 313

Query: 148 ---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
              + D    +  T  + +  CA L DL  G  +H   +      ++ V N L  MYAK 
Sbjct: 314 LMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKC 373

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G I+ A   F+ M+ R+ VS+  +ISGY++NG  ++ + +F EMQL G+NP++ T++++L
Sbjct: 374 GIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVL 433

Query: 265 GAC-----------------------------------FQTGRIDDAGRLFHVIKEKDNV 289
            AC                                    + G+ID A ++F  + ++  V
Sbjct: 434 PACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIV 493

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W TMI+ Y  +G   +AL+LF+ M SE ++PD  +   ++S+C+     + G V  GK 
Sbjct: 494 SWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS-----HSGLVAEGKY 548

Query: 350 VVLGVDDDLLV------SSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
               +  D  +       + ++D+  + G+  +  +    MP   +V  W ++++ 
Sbjct: 549 WFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSA 604



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK GK+  AR +FD+M  R I+SWN ++ A+   G   +   LFD M  
Sbjct: 461 TMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQS 520

Query: 119 R----DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
                D V++   I+  ++ G   E    F+ M +D
Sbjct: 521 EGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQD 556


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/672 (34%), Positives = 368/672 (54%), Gaps = 74/672 (11%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L+  +LH YA++ +L  A DLF ++P +D++SWN+++      G +   R LFD+MP R 
Sbjct: 88  LYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRT 147

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            VS+ T + G    G  +EA  +F  M     EP D   V+A NA            IHG
Sbjct: 148 VVSWTTLVDGLLRLGIVQEAETLFWAM-----EPMD-RDVAAWNA-----------MIHG 190

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                               Y   G +D A  LF +M +R+++SW+ MI+G   NG+ ++
Sbjct: 191 --------------------YCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQ 230

Query: 241 CIDLFQEMQLLGL------------------------------------NPDEVTVSNIL 264
            + LF++M   G+                                    + DE   ++++
Sbjct: 231 ALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLV 290

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                  +++ A R+F  +  K  V WT ++ GY  N K  +AL +F EM+  DV P++ 
Sbjct: 291 TFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNES 350

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           S +S ++SC  L  +  G+V+H  AV +G++    V  +L+ MY KCG   DA  VF  +
Sbjct: 351 SFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGI 410

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             +NVVSWNS+I G AQ+G  + ALAL++++L+E + PD  T   +LSAC H+ + ++ +
Sbjct: 411 NEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLSACSHSGMLQKAR 470

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             F        +T +++HY  M+++LGR  ++++A  ++ S+P K NS++W  LLS C  
Sbjct: 471 CFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRK 530

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             ++   + AA  +FE+EP  +  Y++LSN+YA+  RW +VA IR  MK   V K    S
Sbjct: 531 HSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSS 590

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           W+ +  + HKF+S DR+HP  E IY++L  L  KL+E G+ P+ +  LHD + E+K + +
Sbjct: 591 WLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEML 650

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            YHSE+LA+A+ L+    G + I +MKN+RVCGDCH  +K  + I+ R I++RDS+RFH 
Sbjct: 651 SYHSERLAIAFGLLSTVEG-SAITVMKNLRVCGDCHNAIKLMAKIVDREIVVRDSSRFHD 709

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 710 FKNGICSCGDYW 721



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 116/440 (26%), Positives = 211/440 (47%), Gaps = 58/440 (13%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           H+LR+AID L+ R       ++  ++  C    D+  A++L   M        TT +   
Sbjct: 100 HRLREAID-LFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGL 158

Query: 65  L-LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           L L    ++  LF+A +  D    RD+ +WNA++  +  +G V D   LF +MP RD +S
Sbjct: 159 LRLGIVQEAETLFWAMEPMD----RDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVIS 214

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +++ IAG  + G S +AL +F  M       +    V  L+A A++   R G QIH  + 
Sbjct: 215 WSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSVF 274

Query: 184 -VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +G+   + FV  +L   YA   +++ A  +F  +  +++V W  +++GY  N + ++ +
Sbjct: 275 KLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREAL 334

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACF---------------------------------- 268
           ++F EM  + + P+E + ++ L +C                                   
Sbjct: 335 EVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVMY 394

Query: 269 -QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G + DA  +F  I EK+ V W ++IVG  Q+G    AL LFN+ML E V PD  +++
Sbjct: 395 SKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVT 454

Query: 328 SVVSSCAKLASL--------YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            ++S+C+    L        Y GQ    ++V L ++      ++++D+  +CG  ++A  
Sbjct: 455 GLLSACSHSGMLQKARCFFRYFGQ---KRSVTLTIEH----YTSMVDVLGRCGELEEAEA 507

Query: 380 VFNMMPTR-NVVSWNSMING 398
           V   MP + N + W ++++ 
Sbjct: 508 VVMSMPMKANSMVWLALLSA 527



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 141/350 (40%), Gaps = 70/350 (20%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +D+A  +F  I       +T M+  Y QN +  +A+ LF  +  +DV     S +S++  
Sbjct: 71  LDEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDV----VSWNSIIKG 126

Query: 333 CAKLASLYHGQ----------VVHGKAVVLGV-------------------DDDLLVSSA 363
           C     +   +          VV    +V G+                   D D+   +A
Sbjct: 127 CLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNA 186

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           +I  YC  G  DDA  +F  MP+R+V+SW+SMI G   NG+  +AL L+  ++   +   
Sbjct: 187 MIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLS 246

Query: 424 SFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGIT--------------- 457
           S   V  LSA            +H  +F+ G  HFD   +   +T               
Sbjct: 247 SGVLVCGLSAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCKQMEAACRVF 306

Query: 458 -----PSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIK 509
                 S+  +  ++   G +    +A+++   +      PN   +++ L+ C    DI+
Sbjct: 307 GEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDVVPNESSFTSALNSCCGLEDIE 366

Query: 510 HGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV 557
            G++      ++  + +G Y+   L  MY+ CG   D   +   +  KNV
Sbjct: 367 RGKVIHAAAVKM-GLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNV 415


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/664 (34%), Positives = 370/664 (55%), Gaps = 45/664 (6%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN 94
           R+  +    RL +   L     +T  L    +    + G L  A + F   P +   ++N
Sbjct: 42  RLLALRYPSRLLAPTPLASARSHTCSLSTVAVAAAVRRGDLTGAEEAFASTPRKTTATYN 101

Query: 95  ALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            LL+ +AR+ G + D R LFD++P  D+VSYNT ++     G +  A ++F+ M      
Sbjct: 102 CLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR--- 158

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                                               +V   N +    +K G +++A+ +
Sbjct: 159 ------------------------------------DVVSWNTMVSGLSKSGAVEEAKAV 182

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M  RN VSWN M+SG+  +       + F+     G   D V  + ++      G +
Sbjct: 183 FLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNV 239

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSS 332
             A   F  +  ++ V W  ++ GY +N   +DAL LF  M+ E +V+P+  ++SSV+  
Sbjct: 240 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 299

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C+ L++L  G+ +H   + L +  +L V ++L+ MYCKCG    A  +F  M TR+VV+W
Sbjct: 300 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 359

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N+MI+GYAQ+G   EA+ L++++  E ++P+  TFV+VL+AC+H  L + G   F+ +  
Sbjct: 360 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 419

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
           ++GI P +DHY+CM++LL R+  +++AVDLI+S+P +P+   + TLL+ C +  +++  E
Sbjct: 420 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 479

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
           +AA  L E +P +AG Y+ L+N+YA   +W+DV+ +R  MK   V K   YSWIEI   +
Sbjct: 480 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVM 539

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           H+F S DR HP+  +I+E+L +L ++++  G+ P+   VLHD  E  KV+ +  HSEKLA
Sbjct: 540 HEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLA 599

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +++ LI    G+T +RI KN+RVCGDCH   K  S I  R IILRD+ RFHHF GG+CSC
Sbjct: 600 ISFGLISTAPGMT-LRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSC 658

Query: 693 KDNW 696
            D W
Sbjct: 659 GDYW 662


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 357/638 (55%), Gaps = 37/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++A+ + G V+    LFD++   D VS+N+ I G    GFS   L++F +M     E
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T VS L ACA + +L  G+ +HG  V       V   N L DMY+K G ++ A  +
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F +M +  +VSW  +I+ Y++ G     I LF EMQ  G+ PD  TV++I+ AC      
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A  +F  I  KD V W TMI GY
Sbjct: 414 DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 473

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +QN    +AL LF +M  +  +PD  +++ V+ +CA LA+L  G+ +HG  +  G   DL
Sbjct: 474 SQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 532

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V+ AL+DMY KCG+   A  +F+M+P ++++SW  MI GY  +G   EA++ ++++   
Sbjct: 533 HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIA 592

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++PD  +F ++L+AC H+ L   G   F+S+    G+ P L+HYAC+++LL R  ++ K
Sbjct: 593 GIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSK 652

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A   I+S+P KP++ IW  LLS C +  D+K  E  A H+FELEP N   Y++L+N+YA 
Sbjct: 653 AYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAE 712

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +WE+V  +R  M+ +  K+    SWIE+  K + FV+ +  HP+ + I   LSKL  +
Sbjct: 713 AEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQ 772

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +Q   +S   + VL +  + EK    C HSEK A+A+ ++  P G T +R+ KN RVCGD
Sbjct: 773 MQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRT-VRVSKNRRVCGD 831

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S      I+LRDSNRFHHF  G CSC+D +
Sbjct: 832 CHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRDAF 869



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 153/537 (28%), Positives = 253/537 (47%), Gaps = 73/537 (13%)

Query: 7   LRQAIDTLY-SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           LR AI+ L  S+       +Y  ++  C     +E  KR+ S +  N    +   L  +L
Sbjct: 77  LRNAIELLTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEA-LGAKL 135

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y   G L   R +FDK+    +  WN L+S +A+ G+                    
Sbjct: 136 VFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNF------------------- 176

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                       RE++ +F +MQK       YT    L   A L  ++  K++HG ++  
Sbjct: 177 ------------RESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKL 224

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G N  V N+L   Y K G ++ A  LFD ++  ++VSWN MI+G + NG     +++F
Sbjct: 225 GFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIF 284

Query: 246 QEMQLLGLNPDEVTVSNILGACF-----------------------------------QT 270
            +M +LG+  D  T+ ++L AC                                    + 
Sbjct: 285 IQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKC 344

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G ++ A  +F  + +   V WT++I  Y + G   DA+ LF+EM S+ VRPD ++++S+V
Sbjct: 345 GNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIV 404

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +CA  +SL  G+ VH   +  G+  +L V++ALI+MY KCG  ++A  VF+ +P +++V
Sbjct: 405 HACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIV 464

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+MI GY+QN    EAL L+   +Q+  KPD  T   VL AC      ++G+     I
Sbjct: 465 SWNTMIGGYSQNLLPNEALELFLD-MQKQFKPDDITMACVLPACAGLAALDKGREIHGHI 523

Query: 451 SAVHGITPSLDHYAC-MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               G    L H AC ++++  +   +  A  L   +P K + + W+ +++   M G
Sbjct: 524 -LRRGYFSDL-HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG 577



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 201/410 (49%), Gaps = 39/410 (9%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  I  F   G  R A+++ ++ +   +E    ++ S L  CA+   L  GK++H  I+ 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKS--YELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             +  +  +   L  MY   G++ + R +FD++ N  +  WNL++S Y K G  ++ + L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 245 FQEMQLLGL-----------------------------------NPDEVTVSNILGACFQ 269
           F++MQ LG+                                     +   V++++ A F+
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G ++ A  LF  + E D V W +MI G   NG   + L +F +ML   V  D  ++ SV
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +CA + +L  G+ +HG  V     ++++ S+ L+DMY KCG  + A  VF  M    +
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSW S+I  Y + G   +A+ L+D++  + ++PD +T  S++ AC  +   ++G++   S
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHS 421

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
               +G+  +L     +IN+  +   V++A  +   +P K + + W+T++
Sbjct: 422 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMI 470



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 170/348 (48%), Gaps = 38/348 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            +++  N LL  +++ G++     +F KM     VS+ + IA +  +G   +A+ +F  M
Sbjct: 329 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q     P  YT  S ++ACA    L +G+ +H  ++   +G N+ V NAL +MYAK G +
Sbjct: 389 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++AR +F ++  +++VSWN MI GY +N  P + ++LF +MQ     PD++T++ +L AC
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQ-KQFKPDDITMACVLPAC 507

Query: 268 FQTGRIDD-----------------------------------AGRLFHVIKEKDNVCWT 292
                +D                                    A  LF +I +KD + WT
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 567

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVV 351
            MI GY  +G   +A+  FNEM    + PD+ S S+++++C+    L  G +  +     
Sbjct: 568 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNE 627

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            GV+  L   + ++D+  + G    A+     MP + +   W  +++G
Sbjct: 628 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 675


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 329/572 (57%), Gaps = 39/572 (6%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           +S L  C  +  +   KQ+H ++    +  ++ V N L  M AK  ++  A  LF++M  
Sbjct: 7   ISTLFKCRNIFQI---KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEE 63

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------- 270
           R+ VSW++MI G++KNG  ++C   F+E+   G  PD  ++  ++ AC  T         
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 271 --------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                     G ID+A +LF  + +KD V  T MI GY + GK 
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            ++ +LF++M  +   PDK ++ ++V++CAKL ++   ++VH          D+ + +A+
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAM 243

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KCG  D +  +F+ M  +NV+SW++MI  Y  +GQ  EAL L+  +L   + P+ 
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNR 303

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TF+S+L AC HA L + G   F  +S  +G+ P + HY CM++LLGR+  +D+A+ LI+
Sbjct: 304 ITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
           ++  + +  IW   L  C +   +   E AA+ L  L+  N G YI+LSN+YA  GRW+D
Sbjct: 364 NMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKD 423

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA IR+ M  + +KK   Y+WIE+DN +++F + D +H  +  IYE L  L +KL+ AG+
Sbjct: 424 VAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGY 483

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P+T  VLHD  EE K+  +  HSEKLA+A+ LI  P G TPIRI KN+RVCGDCH F K
Sbjct: 484 VPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDG-TPIRITKNLRVCGDCHSFCK 542

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             S I  R II+RD+NRFHHF  G CSC D W
Sbjct: 543 LVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 36/334 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+I  N LL   A+   +     LF+KM  RD VS++  I GF   G      Q F  
Sbjct: 32  IHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRE 91

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + +   +P +++    + AC   + L  G+ IH  ++   L  + FV + L DMYAK G 
Sbjct: 92  LIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGM 151

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ID A+ LFDRM  ++LV+  +MI+GY + G+P +   LF +M+  G  PD+V +  I+ A
Sbjct: 152 IDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNA 211

Query: 267 C-----------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G ID +  +F  +++K+ + W
Sbjct: 212 CAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISW 271

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAV 350
           + MI  Y  +G+  +AL LF+ ML+  + P++ +  S++ +C+    +  G Q+    +V
Sbjct: 272 SAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSV 331

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
             GV  D+   + ++D+  + G  D A  +   M
Sbjct: 332 SYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENM 365



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 137/250 (54%), Gaps = 6/250 (2%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G+L ++  L + + L + +  + L+  +A+ G + + + LFD+MP +D V+    IAG+A
Sbjct: 120 GRLIHSTVLKNGLHLDNFVC-STLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYA 178

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             G   E+  +F +M++D F P     V+ +NACA+L  + + + +H  +       +V 
Sbjct: 179 ECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVE 238

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           +  A+ DMYAK G ID +R +FDRM  +N++SW+ MI  Y  +GQ ++ ++LF  M   G
Sbjct: 239 LGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSG 298

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDA 307
           + P+ +T  ++L AC   G +DD  +LF ++        D   +T M+    + G+ + A
Sbjct: 299 IIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQA 358

Query: 308 LILFNEMLSE 317
           L L   M  E
Sbjct: 359 LRLIENMEVE 368


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 369/663 (55%), Gaps = 45/663 (6%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           V L + L +             + + ++H YA+ G    AR  FD+  ++D+++W  ++S
Sbjct: 120 VLLGRMLHAACFRTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVIS 179

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
             A+ G + D R L  + P+R+ V++   I+G++  G + EA+  F+ M  D   P + T
Sbjct: 180 GLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVT 239

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGN----LGGNVFVRNALTDMYAKGGEIDKARWLF 214
            +  L+AC QL DL  G  +H  ++VG+    +   + V  AL DMYAK G+  +AR +F
Sbjct: 240 VIGMLSACGQLKDLNFGCSLH--MLVGDKRMLMSDKLVV--ALIDMYAKCGDTGRAREVF 295

Query: 215 DRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           D +   R    WN MI GY K                                    G +
Sbjct: 296 DALGRGRGPQPWNAMIDGYCK-----------------------------------VGHV 320

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D A  LF  +++ D + + ++I GY   G+  +AL+LF +M    +  D F++  ++++ 
Sbjct: 321 DIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTAS 380

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L +L  G+ +H       V+ D+ + +AL+DMY KCG  ++A   F  M  R+V +W+
Sbjct: 381 ASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWS 440

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G A NG    AL  +  +  +    +S T+++VL+AC H+ L + G+ +FD +  +
Sbjct: 441 AMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLL 500

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           H I P ++HY CMI+LLGRS  +D+A+DL++++P +PN++IW+++LS C +  ++   + 
Sbjct: 501 HNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQN 560

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA HL +LEP     Y+ + N+Y    +WED + IR  M+ + VKK A YS I +  +VH
Sbjct: 561 AAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVH 620

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           KF+  DR+HP+   I   + ++ ++L+ AG+SP T  +  D  EEEK +++  HSEKLA+
Sbjct: 621 KFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAI 680

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ L+     + P+ I+KN+RVC DCH  +K  S +  R II+RD +RFHHF GG CSC 
Sbjct: 681 AFGLVSLAPNL-PVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCN 739

Query: 694 DNW 696
           D W
Sbjct: 740 DFW 742



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 33/176 (18%)

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL-ASLYHGQVVHGKAV 350
           T +   +  +   +  +IL+  M   DV PD F+   +   CA+  A +  G+++H    
Sbjct: 72  TALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGRMLHAACF 131

Query: 351 VLGVDDDL-LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS--------------- 394
              +   + L++S +I MY + G+  DA   F+    ++VV+W +               
Sbjct: 132 RTLLPSAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDAR 191

Query: 395 ----------------MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
                           +I+GY++ G+  EA+  ++ +L + + PD  T + +LSAC
Sbjct: 192 RLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSAC 247


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/637 (36%), Positives = 344/637 (54%), Gaps = 36/637 (5%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            L+  +++ G   D   +F  +   D V ++  I     +G S E++++F  M+     P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT  S L+A     +L+ G+ IH  +       +V V NAL  MY K G +     L+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQ 269
           + M +R+L+SWN  +SG    G   + + +F  M   G  P+  T  +ILG+C       
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 270 TGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
            GR                              ++DA   F+ +  +D   WT +I  Y 
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q  + E AL  F +M  E V+P++F+++  +S C+ LASL  GQ +H      G   D+ 
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMF 653

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V SAL+DMY KCG  ++A  +F  +  R+ ++WN++I GYAQNGQ  +AL  +  +L E 
Sbjct: 654 VGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG 713

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           + PD  TF  +LSAC H  L E G+ HF+S+    GI+P++DH ACM+++LGR    D+ 
Sbjct: 714 ISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDEL 773

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            D I+ +    N+LIW T+L    M  ++  GE AA  LFEL+P     YI+LSN++A  
Sbjct: 774 EDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRW+DV  +RS M SK VKK    SW+E + +VH FVS D +HP+ + I+ +L +L ++L
Sbjct: 834 GRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDREL 893

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
               + P T+ VLH+  E EK +++ +HSE+LAL + LI        IRI KN+R+C DC
Sbjct: 894 ASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTS-SEKKIRIFKNLRICRDC 952

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  MK  S I  + I++RD  RFHHF  G CSC D W
Sbjct: 953 HDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 257/547 (46%), Gaps = 88/547 (16%)

Query: 87  LRDIIS-----WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           ++D+I+     W +L++ +A+       R +  KMP RD VS+   I G   +GF+ +++
Sbjct: 139 VKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSI 198

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F  MQ +   P ++T  + L AC+  + L  GKQ+H +     L  ++FV +AL D+Y
Sbjct: 199 YLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLY 258

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK GEI+ A  +F  M  +N V+WN++++GY + G     + LF  M  L +  +E T++
Sbjct: 259 AKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLT 318

Query: 262 NILGACFQT--------------------------GRID---------DAGRLFHVIKEK 286
            +L  C  +                          G +D         DA  +F  IK+ 
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKP 378

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W+ +I    Q G+ E+++ LF+ M   D  P++++I S++S+     +L +GQ +H
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIH 438

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                 G + D+ VS+AL+ MY K G   D   ++  M  R+++SWN+ ++G    G   
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHG 455
             L ++  +L+E   P+ +TF+S+L +C           +HA +    +N  D  + V  
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII---KNQLDDNNFV-- 553

Query: 456 ITPSLDHYA-CM-----------------------INLLGRSSDVDKAVDLIKSLPH--- 488
            T  +D YA CM                       I    +++  +KA++  + +     
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE---LEPINAGPYIMLSNMYAACGRWEDV 545
           KPN    +  LS C+    ++ G+     +F+   +  +  G    L +MYA CG  E+ 
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS--ALVDMYAKCGCMEEA 671

Query: 546 ASIRSSM 552
            ++  ++
Sbjct: 672 EALFEAL 678



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 224/496 (45%), Gaps = 68/496 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L+  YAK G++  A  +F  MP ++ ++WN LL+ +A+ G V  +          
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV---------- 298

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                L++F  M +   +  ++T  + L  CA   +L++G+ IH
Sbjct: 299 ---------------------LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I+     GN F+   L DMY+K G    A  +F  +   ++V W+ +I+   + GQ +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR--------------------------- 272
           + I LF  M+L    P++ T+ ++L A   TG                            
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457

Query: 273 --------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                   + D  +L+  + ++D + W   + G    G  +  L +F  ML E   P+ +
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMY 517

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +  S++ SC+ L  +++G+ VH   +   +DD+  V +ALIDMY KC   +DA   FN +
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R++ +W  +I  YAQ  Q  +AL  + ++ QE +KP+ FT    LS C      E GQ
Sbjct: 578 SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQ 637

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
               S+    G    +   + ++++  +   +++A  L ++L  + +++ W+T++   A 
Sbjct: 638 -QLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRR-DTIAWNTIICGYAQ 695

Query: 505 KGDIKHGEMAARHLFE 520
            G       A R + +
Sbjct: 696 NGQGNKALTAFRMMLD 711



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 171/352 (48%), Gaps = 47/352 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + ++G V D   L++ M  RD +S+N  ++G  + G     L +F  M 
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHML 508

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F P  YT +S L +C+ L D+  G+Q+H  I+   L  N FV  AL DMYAK   ++
Sbjct: 509 EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A   F+R++ R+L +W ++I+ Y +  Q +K ++ F++MQ  G+ P+E T++  L  C 
Sbjct: 569 DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628

Query: 268 ---------------FQTGRIDD-------------------AGRLFHVIKEKDNVCWTT 293
                          F++G + D                   A  LF  +  +D + W T
Sbjct: 629 SLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNT 688

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I GY QNG+   AL  F  ML E + PD  + + ++S+C+     + G V  GK     
Sbjct: 689 IICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS-----HQGLVEEGKEHFNS 743

Query: 354 VDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMING 398
           +  D  +S      + ++D+  + G  D+       M  ++N + W +++  
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 155/322 (48%), Gaps = 35/322 (10%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           + S L  CA    L   K IHG IV   +  +  +  +L ++YAK      AR +  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
           +R++VSW  +I G +  G     I LFQEMQ  G+ P+E T++  L AC           
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G I+ A ++F  + E+++V W  ++ GY Q G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
               L LF  M+  DV+ ++F++++V+  CA   +L  GQV+H   +  G + +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KCG+  DA  VF  +   ++V W+++I    Q GQ  E++ L+  +   +  P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 424 SFTFVSVLSACLHADLFERGQN 445
            +T  S+LSA  +    + GQ+
Sbjct: 415 QYTICSLLSAATNTGNLQYGQS 436



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +F    + D+   +AL+  +A+ G +++  ALF+ +  RD++++NT I G+A  G   +A
Sbjct: 643 VFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKA 702

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALT 198
           L  F  M  +   P   T    L+AC+    +  GK+ H   +  + G +  V +   + 
Sbjct: 703 LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE-HFNSMYRDFGISPTVDHCACMV 761

Query: 199 DMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLF----QEMQLLGL 253
           D+  + G+ D+      +M  ++N + W  ++      G  K   +L        +L  L
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVL------GASKMHNNLVLGEKAANKLFEL 815

Query: 254 NPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEK 286
            P+E +   +L   F T GR DD  R+  ++  K
Sbjct: 816 QPEEESSYILLSNIFATEGRWDDVKRVRSLMSSK 849


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/647 (36%), Positives = 355/647 (54%), Gaps = 40/647 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +D++   +L+   A+ G +++  ++F  M  +RD +S    I  +   G +  AL  + +
Sbjct: 101 KDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWK 160

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+    EP  +T+ + L AC+    L  GK IH  I+     GN+ VRNAL  MYAK G 
Sbjct: 161 MRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGS 220

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  ++ LF  M+ +++VSWN MI+ Y   G  K    LF  M  LG  PD  T S+ILGA
Sbjct: 221 LKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGA 280

Query: 267 CFQTGRIDDAGRLFHV------------------------------------IKEKDNVC 290
           C    R++D GR+ HV                                    I++K+   
Sbjct: 281 CASPKRLED-GRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGA 339

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W TM+  Y Q  K +DAL L+  ML E   PD+F+ SSVV SCA L +L  G+ +H  + 
Sbjct: 340 WNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECST 399

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G + D+++ +AL++MY KCG   DA   F+ +  ++VVSW++MI   AQ+G   EAL 
Sbjct: 400 SCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALE 459

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L   +  + +  +  T  SVL AC H      G ++F  +S   GI    ++    I+LL
Sbjct: 460 LSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLL 519

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  + +A  ++ ++P K + +   TLL  C + GD++ G+   + +  LEP N G Y+
Sbjct: 520 GRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYV 579

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +L+NMYAA GRW+DVA +R  M+ K VK+    S IE  +K+++F   D ++P    I  
Sbjct: 580 LLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRA 639

Query: 591 ELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
           EL +L  ++ +E G+ P+T+ V HD  +++K + + +HSEK+A+ + LI  P G T +RI
Sbjct: 640 ELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGST-LRI 698

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +KN+RVC DCH   K AS I GR II+RD  RFHHF GG CSC D W
Sbjct: 699 IKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/492 (27%), Positives = 225/492 (45%), Gaps = 50/492 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D    N ++  + +  S +D R +FD++  R++ S++  +  +      +EAL+V+  M 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +       YT  S L AC +LLD+  G+ +  K        +V V  +L  ++AK G ++
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 209 KARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           +A  +F  M   R+++S   MI  Y+++G+    +D + +M+  GL PD  T + ILGAC
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G + D+  LF  +  KD V W 
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  YT  G ++DA  LF+ M +    PD ++ SS++ +CA    L  G+++H +    
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITAR 300

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G D D  + + LI M+ +CG  + A   F  +  + + +WN+M+  YAQ  +  +AL LY
Sbjct: 301 GFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLY 360

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL-- 470
             +L E   PD FTF SV+ +C        G+      S   G    +     ++N+   
Sbjct: 361 KNMLLEGFTPDRFTFSSVVDSCASLGALREGK-FIHECSTSCGFEKDVILGTALVNMYAK 419

Query: 471 -GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR--HLFELEPINAG 527
            G  +D  K+ D I +     + + WS +++  A  G   H E A    HL  L+ I A 
Sbjct: 420 CGSLADAKKSFDGISN----KDVVSWSAMIAASAQHG---HAEEALELSHLMNLQGI-AQ 471

Query: 528 PYIMLSNMYAAC 539
             +  S++  AC
Sbjct: 472 NEVTASSVLHAC 483


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/689 (35%), Positives = 375/689 (54%), Gaps = 87/689 (12%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           N L+S + R G+ ++ R +FD+M  R   D VS+N+ +A +   G S  A+++F RM +D
Sbjct: 184 NGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTED 243

Query: 151 -RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
               P   + V+ L ACA +    RGKQ+HG  +   L  +VFV NA+ DMYAK G +++
Sbjct: 244 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEE 303

Query: 210 ARWLFDRMNNRNLVSWNLM-----------------------------------ISGYLK 234
           A  +F+RM  +++VSWN M                                   I+GY +
Sbjct: 304 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 363

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI--------------------- 273
            G   + +D+F++M L G  P+ VT+ ++L  C   G +                     
Sbjct: 364 RGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEND 423

Query: 274 --DD-------------------AGRLFHVIKEKDN--VCWTTMIVGYTQNGKEEDALIL 310
             DD                   A  +F +I  KD   V WT +I G  Q+G+  +AL L
Sbjct: 424 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 483

Query: 311 FNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDM 367
           F++ML  D  V P+ F+IS  + +CA+L +L  G+ +H   +    +  +L V++ LIDM
Sbjct: 484 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 543

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y K G  D A  VF+ M  RN VSW S++ GY  +G+  EAL ++ ++ +  L PD  TF
Sbjct: 544 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTF 603

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           V VL AC H+ + ++G N+F+ ++   G+ P  +HYACM++LL R+  +D+A++LI+ +P
Sbjct: 604 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 663

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            KP   +W  LLS C +  +++ GE AA  L ELE  N G Y +LSN+YA    W+DVA 
Sbjct: 664 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 723

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           IR  MK+  +KK    SW++       F + D +HP ++ IY+ L  L+++++  G+ P+
Sbjct: 724 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 783

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            +  LHD  +EEK   +  HSEKLALAY ++    G  PIRI KN+R CGDCH    + S
Sbjct: 784 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPG-APIRITKNLRACGDCHSAFTYIS 842

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            II   II+RDS+RFHHF  G+CSC+  W
Sbjct: 843 IIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 138/490 (28%), Positives = 230/490 (46%), Gaps = 89/490 (18%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  I    + GF  + LQ++ RMQ+  + P  YT    L AC ++   R G  +H  + 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKK 240
                 NVFV N L  MY + G  + AR +FD M  R   +LVSWN +++ Y++ G   +
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 241 CIDLFQEM-QLLGLNPDEVTVSNILGAC-------------------------------- 267
            + +F+ M + LG+ PD V++ N+L AC                                
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 292

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV----- 319
               + G +++A ++F  +K KD V W  M+ GY+Q G+ +DAL LF ++  E +     
Sbjct: 293 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 352

Query: 320 ------------------------------RPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
                                          P+  ++ S++S CA   +L HG+  H  A
Sbjct: 353 TWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 350 V--VLGVD-----DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYA 400
           +  +L +D     DDL+V +ALIDMY KC     A  +F+++P   R+VV+W  +I G A
Sbjct: 413 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472

Query: 401 QNGQDLEALALYDKLLQEN--LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           Q+G+  EAL L+ ++LQ +  + P++FT    L AC        G+     +      + 
Sbjct: 473 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 532

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            L    C+I++  +S DVD A  +  ++ H+ N + W++L++   M G    GE A +  
Sbjct: 533 MLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWTSLMTGYGMHG---RGEEALQIF 588

Query: 519 FELEPINAGP 528
           +E++ +   P
Sbjct: 589 YEMQKVXLVP 598



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 188/392 (47%), Gaps = 74/392 (18%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N ++  YAK G +  A  +F++M ++D++SWNA+++ +++ G   D   LF+K  I
Sbjct: 285 VFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEK--I 342

Query: 119 RDS------VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           R+       V+++  IAG+A +G   EAL VF +M     EP   T VS L+ CA    L
Sbjct: 343 REEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTL 402

Query: 173 RRGKQIHGKIV--VGNL-----GGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLV 223
             GK+ H   +  + NL     G ++ V NAL DMY+K      AR +FD +   +R++V
Sbjct: 403 LHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVV 462

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE------VTVSNILGACF--------- 268
           +W ++I G  ++G+  + ++LF +M    L PD        T+S  L AC          
Sbjct: 463 TWTVLIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGR 518

Query: 269 ---------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      ++G +D A  +F  + +++ V WT+++ GY  +
Sbjct: 519 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMH 578

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+ E+AL +F EM    + PD  +   V+ +C+     + G V  G     G++ D  V 
Sbjct: 579 GRGEEALQIFYEMQKVXLVPDGVTFVVVLYACS-----HSGMVDQGINYFNGMNKDFGVV 633

Query: 362 ------SALIDMYCKCGVTDDAWTVFNMMPTR 387
                 + ++D+  + G  D+A  +   MP +
Sbjct: 634 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMK 665



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C R+  +   +++ +++  N +E    F+ N L+  Y+KSG +  AR +FD M  R+
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFS 145
            +SW +L++ +   G  ++   +F +M     + D V++   +   ++ G   + +  F+
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 146 RMQKD 150
            M KD
Sbjct: 625 GMNKD 629



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 6/122 (4%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARD-----LFDKMPLRDIISWNALLSAHARSGSV 106
           NF  PN  F  +  L   A+ G L + R      L ++     +   N L+  +++SG V
Sbjct: 492 NFVMPNA-FTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDV 550

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
              R +FD M  R+ VS+ + + G+   G   EALQ+F  MQK    P   T V  L AC
Sbjct: 551 DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYAC 610

Query: 167 AQ 168
           + 
Sbjct: 611 SH 612



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 54/280 (19%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-- 384
           S++   C  LAS    ++ H + +V G+  D    + +I MY        A +V   +  
Sbjct: 52  STLFHQCKSLAS---AELTHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHP 105

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---------- 434
            +  V  WN +I      G   + L LY ++ +   +PD +TF  VL AC          
Sbjct: 106 SSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGA 165

Query: 435 -LHADLFERG--QNHF--DSISAVHGITPSLDH------------------YACMINLLG 471
            +HA +F  G   N F  + + +++G   + ++                  +  ++    
Sbjct: 166 SVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYM 225

Query: 472 RSSDVDKAVDLIKSLPH----KPNSLIWSTLLSVCA-----MKGDIKHGEMAARHLFELE 522
           +  D  +A+ + + +      +P+++    +L  CA      +G   HG      LF  E
Sbjct: 226 QGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLF--E 283

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  G  ++  +MYA CG  E+   +   MK K+V  + A
Sbjct: 284 DVFVGNAVV--DMYAKCGMMEEANKVFERMKVKDVVSWNA 321


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/662 (35%), Positives = 372/662 (56%), Gaps = 60/662 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G + D ++L      RD V++N+ I+ F+      EAL     M  +  +
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVK 213

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P   T  S L AC+ L  LR GK+IH   +   ++  N FV +AL DMY   G+++  R 
Sbjct: 214 PDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRL 273

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQ-- 269
           +FD + +R +  WN MI+GY ++   +K + LF EM+   GL  +  T+S+I+ A  +  
Sbjct: 274 VFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCE 333

Query: 270 ---------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                             G I  + R+F  ++++D V W T+I 
Sbjct: 334 GISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIIT 393

Query: 297 GYTQNGKEEDALILFNEMLSED----------------VRPDKFSISSVVSSCAKLASLY 340
            Y   G+  DAL+L +EM   +                 +P+  ++ +V+  CA L++L 
Sbjct: 394 SYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALA 453

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +H  A+   +   + V SAL+DMY KCG  + A  VF+ MP RNV++WN +I  Y 
Sbjct: 454 KGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYG 513

Query: 401 QNGQDLEALALYDKLLQEN-----LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
            +G+  E+L L++ ++ E      +KP   TF+++ ++C H+ + + G + F  +   HG
Sbjct: 514 MHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHG 573

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMA 514
           I P+ DHYAC+++L+GR+  V++A  L+ ++P   + +  WS+LL  C +  +I+ GE+A
Sbjct: 574 IEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIA 633

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A +L +L+P  A  Y++LSN+Y++ G W+   ++R  MK+  VKK    SWIE  ++VHK
Sbjct: 634 AENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHK 693

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F++ D +HP++E +++ L  L ++L++ G+ P+T  VLHD  EEEK   +C HSEKLA+A
Sbjct: 694 FLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIA 753

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + ++  P G T IR+ KN+RVC DCH   KF S I  R IILRD+ RFHHF  G CSC D
Sbjct: 754 FGILNTPPGTT-IRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGD 812

Query: 695 NW 696
            W
Sbjct: 813 YW 814



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 246/543 (45%), Gaps = 93/543 (17%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           A+  ++     + ++ L K++ +H+    +   ++  + N L++ Y K G L  A  +FD
Sbjct: 12  AFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFD 71

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           ++  RD +SWN+++SA  R          F++  +                     A++ 
Sbjct: 72  RITERDQVSWNSIISALCR----------FEEWEV---------------------AIKA 100

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLD---LRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           F  M  + FEP+ +T VS   AC+ L     L  GKQIHG           F  NAL  M
Sbjct: 101 FRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHG-CCFRKGHWRTFSNNALMAM 159

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YAK G +D A+ L     +R+LV+WN MIS + +N +  + +   + M L G+ PD VT 
Sbjct: 160 YAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTF 219

Query: 261 SNILGAC-----FQTG--------RIDD----------------------AGRL-FHVIK 284
           +++L AC      +TG        R DD                      +GRL F  + 
Sbjct: 220 ASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVL 279

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           ++    W  MI GY Q+  +E AL+LF EM  +  +  +  ++SS+V +  +   +   +
Sbjct: 280 DRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKE 339

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +HG  +  G++ +  + +ALIDMY + G    +  +F+ M  R++VSWN++I  Y   G
Sbjct: 340 GIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICG 399

Query: 404 QDLEALAL----------------YDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-H 446
           +  +AL L                Y+   Q   KP+S T ++VL  C       +G+  H
Sbjct: 400 RSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIH 459

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +I  +  +   +   + ++++  +   ++ A  +   +P + N + W+ ++    M G
Sbjct: 460 AYAIRNL--LASQVTVGSALVDMYAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMHG 516

Query: 507 DIK 509
             K
Sbjct: 517 KGK 519



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 214/499 (42%), Gaps = 95/499 (19%)

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG--NVFVRNALTDMYAKGGEIDK 209
           F P ++   + L A A + +L  GKQIH  +     G   +V + N L +MY K G +  
Sbjct: 6   FSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGD 65

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV--------- 260
           A  +FDR+  R+ VSWN +IS   +  + +  I  F+ M + G  P   T+         
Sbjct: 66  AYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSN 125

Query: 261 ----------SNILGACFQT------------------GRIDDAGRLFHVIKEKDNVCWT 292
                       I G CF+                   GR+DDA  L  + +++D V W 
Sbjct: 126 LRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWN 185

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI  ++QN +  +AL+    M+ E V+PD  + +SV+ +C+ L  L  G+ +H  A  L
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIH--AYAL 243

Query: 353 GVDDDL---LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
             DD +    V SAL+DMYC CG  +    VF+ +  R +  WN+MI GYAQ+  D +AL
Sbjct: 244 RTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKAL 303

Query: 410 ALYDKL-LQENLKPDSFTFVSVLSA---C--------LHADLFERG-------QNHF-DS 449
            L+ ++     L  ++ T  S++ A   C        +H  + +RG       QN   D 
Sbjct: 304 MLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDM 363

Query: 450 ISAVHGITPSLDHYACMIN--------------LLGRSSDV----------------DKA 479
            S +  I  S   +  M +              + GRSSD                 D  
Sbjct: 364 YSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGD 423

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPINAGPYIMLSNMYAA 538
            +  K +P KPNS+   T+L  CA    +  G E+ A  +  L          L +MYA 
Sbjct: 424 YNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAK 483

Query: 539 CGRWEDVASIRSSMKSKNV 557
           CG       +   M  +NV
Sbjct: 484 CGCLNLARRVFDQMPIRNV 502



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 43/301 (14%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKC 371
           M+     PD F+  +V+ + A +  LY G+ +H      G      + + + L++MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   DA+ VF+ +  R+ VSWNS+I+   +  +   A+  +  +L E  +P SFT VS+ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 432 SAC--------------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            AC              +H   F +G     S +A+  +   L       +LL    D D
Sbjct: 121 LACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRD 180

Query: 478 KAV--DLIKSLPH-------------------KPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
                 +I S                      KP+ + ++++L  C+    ++ G+    
Sbjct: 181 LVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHA 240

Query: 517 HLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV----KKFAAYSWIEIDN 570
           +    + +    ++   L +MY  CG+ E    +  S+  + +       A Y+  E D 
Sbjct: 241 YALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300

Query: 571 K 571
           K
Sbjct: 301 K 301


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/636 (35%), Positives = 364/636 (57%), Gaps = 48/636 (7%)

Query: 107 QDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           Q+L  LF++   + D  S+N+ IA  A  G S EAL  FS M+K    PT  +   A+ A
Sbjct: 26  QNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKA 85

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           C+ L D+  GKQ H +  V     ++FV +AL  MY+  G+++ AR +FD +  R++VSW
Sbjct: 86  CSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSW 145

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQT-------- 270
             MI GY  NG     + LF+++ L+  N D+       + + +++ AC +         
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDL-LVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES 204

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +  A ++F  I +KD V + +++  Y Q+
Sbjct: 205 IHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQS 264

Query: 302 GKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G   +A  +F  ++   V   +  ++S+V+ + +   +L  G+ +H + + +G++DD++V
Sbjct: 265 GMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIV 324

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +++IDMYCKCG  + A   F+ M  +NV SW +MI GY  +G   +AL L+  ++   +
Sbjct: 325 GTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  TFVSVL+AC HA L   G   F+++    G+ P L+HY CM++LLGR+  + KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI+ +  KP+S+IWS+LL+ C +  +++  E++   LFEL+  N G Y++LS++YA  G
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DV  +R  MK++ + K   +S +E++ +VH F+  D  HP+ E IYE L++L +KL 
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLL 564

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAG+  NT  V HD  EEEK  ++  HSEKLA+A+ ++    G T + ++KN+RVC DCH
Sbjct: 565 EAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGST-VNVVKNLRVCSDCH 623

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S I+ R  ++RD+ RFHHF  G CSC D W
Sbjct: 624 NVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 133/254 (52%), Gaps = 11/254 (4%)

Query: 88  RDIISWNALLSAHARSG--SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           R +   N LL A+A+ G   V   R +FD++  +D VSYN+ ++ +A  G S EA +VF 
Sbjct: 216 RGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFR 275

Query: 146 RMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           R+ K++    +   +S  L A +    LR GK IH +++   L  +V V  ++ DMY K 
Sbjct: 276 RLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKC 335

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ++ AR  FDRM N+N+ SW  MI+GY  +G   K ++LF  M   G+ P+ +T  ++L
Sbjct: 336 GRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVL 395

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G   +  R F+ +K +  V      +  M+    + G  + A  L   M    +
Sbjct: 396 AACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM---KM 452

Query: 320 RPDKFSISSVVSSC 333
           +PD    SS++++C
Sbjct: 453 KPDSIIWSSLLAAC 466



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 189/456 (41%), Gaps = 107/456 (23%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T  ++   +  C+ + D+   K+      +  Y+ +  F+ + L+  Y+  GKL  AR +
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDI-FVSSALIVMYSTCGKLEDARKV 133

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD++P RDI+SW +++  +  +G+  D  +LF  + + ++                    
Sbjct: 134 FDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDEN-------------------- 173

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
                   D         VS ++AC+++      + IH  ++       V V N L D Y
Sbjct: 174 -----DDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAY 228

Query: 202 AKGGE--IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ------------- 246
           AKGGE  +  AR +FD++ +++ VS+N ++S Y ++G   +  ++F+             
Sbjct: 229 AKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAI 288

Query: 247 -----------------------EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
                                  ++  +GL  D +  ++I+    + GR++ A + F  +
Sbjct: 289 TLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRM 348

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           K K+   WT MI GY  +G    AL LF  M+   VRP+  +  SV+++C+         
Sbjct: 349 KNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACS--------- 399

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMING 398
                                       G+  + W  FN M  R  V      +  M++ 
Sbjct: 400 --------------------------HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             + G   +A   YD + +  +KPDS  + S+L+AC
Sbjct: 434 LGRAGFLQKA---YDLIQRMKMKPDSIIWSSLLAAC 466



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 136/340 (40%), Gaps = 76/340 (22%)

Query: 18  GQAATEEAYTQLVLDCTRVN-DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA------ 70
           G A   + + Q+V D  RV+ +  ++   QS M    +E     + N+++ F A      
Sbjct: 235 GVAVARKIFDQIV-DKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTV 293

Query: 71  -----KSGKLFYARDLFD---KMPLRD-IISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
                 SG L   + + D   +M L D +I   +++  + + G V+  R  FD+M  ++ 
Sbjct: 294 LLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNV 353

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
            S+   IAG+   G + +AL++F  M      P   T VS L AC+              
Sbjct: 354 RSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSH------------- 400

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-----NLVSWNLMISGYLKNG 236
                                 G  ++  RW F+ M  R      L  +  M+    + G
Sbjct: 401 ---------------------AGLHVEGWRW-FNAMKGRFGVEPGLEHYGCMVDLLGRAG 438

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA----GRLFHVIKEKDNVCWT 292
             +K  DL Q M+   + PD +  S++L AC     ++ A     RLF +     + C  
Sbjct: 439 FLQKAYDLIQRMK---MKPDSIIWSSLLAACRIHKNVELAEISVARLFEL---DSSNCGY 492

Query: 293 TMIVG--YTQNGKEEDA----LILFNEMLSEDVRPDKFSI 326
            M++   Y   G+ +D     +I+ N  L   V+P  FS+
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGL---VKPPGFSL 529


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/621 (36%), Positives = 352/621 (56%), Gaps = 37/621 (5%)

Query: 112 LFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           +F K P   ++  YNT I G  +K     A+ +++ M K    P  +T    L ACA+L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
               G  IH  +       +VFV+  +   Y+K G +  A  +FD M  +N+VSW  MI 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------- 272
           G ++ G+ ++ +DLF+ +   GL PD   +  +L AC      ++GR             
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238

Query: 273 -----------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                            +++A  +F  + EKD VCW+ MI GY  NG   +A+ LF EM 
Sbjct: 239 NVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR 298

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
             +VRPD +++   +SSCA L +L  G    G         + ++ ++LID Y KCG  +
Sbjct: 299 KVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSME 358

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           +A  V+ MM  ++ V +N++I+G A  GQ   A  ++ ++ +  + P+  TFV +L  C 
Sbjct: 359 EALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCT 418

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           HA L + G+++F+S+S    +TP+++HY CM++LL R+  +D+A +LIK +P K N ++W
Sbjct: 419 HAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVW 478

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            +LL  C +  + +  E   + L ELEP N+G Y++LSN+Y+A  RW++   IRS++  K
Sbjct: 479 GSLLGGCRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEK 538

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            ++K   YSW+E+D  VH+F+  D +HP ++ IYE+L  L K L+EAG++P T+ VL D 
Sbjct: 539 GMQKLPGYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDV 598

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +EEEK   +  HSEKLA+A+ LI        IR++KN+RVCGDCH  +K  S + GR I+
Sbjct: 599 EEEEKEHFLGCHSEKLAVAFALISTGAKYV-IRVVKNLRVCGDCHEAIKHISKVTGREIV 657

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD+NRFH F  G CSC+D W
Sbjct: 658 IRDNNRFHCFSDGACSCRDYW 678



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 163/352 (46%), Gaps = 47/352 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+     ++  +++ G ++D   +FD M +++ VS+   I G    G  REA+ +F  + 
Sbjct: 138 DVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDLFRGLL 197

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P  +  V  L ACA+L DL  G+ I   +    L  NVFV  +L DMY K G ++
Sbjct: 198 ESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTKCGSME 257

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
           +AR++FD M  +++V W+ MI GY  NG P++ I+LF EM+ + + PD   +   L +C 
Sbjct: 258 EARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCA 317

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G +++A  ++ ++KEKD V +  
Sbjct: 318 SLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNA 377

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G    G+   A  +F +M    + P++ +   ++  C      + G V  G+     
Sbjct: 378 VISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCT-----HAGLVDDGRHYFNS 432

Query: 354 VDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           +  D  V+        ++D+  + G  D+A  +   MP + NV+ W S++ G
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGG 484



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 99/194 (51%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R++    +L+  + + GS+++ R +FD M  +D V ++  I G+A+ G  REA+++F  M
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEM 297

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +K    P  Y  V AL++CA L  L  G    G +       N  +  +L D YAK G +
Sbjct: 298 RKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSM 357

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A  ++  M  ++ V +N +ISG    GQ      +F +M   G+ P+E T   +L  C
Sbjct: 358 EEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGC 417

Query: 268 FQTGRIDDAGRLFH 281
              G +DD    F+
Sbjct: 418 THAGLVDDGRHYFN 431


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/674 (34%), Positives = 374/674 (55%), Gaps = 74/674 (10%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C R++ +E    + SH+  + +E +  F+ N L+H Y+  G L  AR         
Sbjct: 117 LLNSCARLSSLEPGHEVHSHIIKHGFESDL-FVRNALIHLYSVFGNLNLAR--------- 166

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
                                  LFD+  +RD VSYNT I G+A       AL +F  MQ
Sbjct: 167 ----------------------TLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKGGE 206
                P ++T V+  + C+ L +   GKQIH ++   + ++  N+ +++A+ DMYAK G 
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 207 IDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           I+ A  +F  M  +++  +W+ M+ GY + G+                            
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGE---------------------------- 296

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                  I+ A +LF+ + E+D + WT MI GY+Q G+  +AL LF EM +  ++PD+ +
Sbjct: 297 -------INVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVT 349

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + +V+S+CA+L +   G+ ++ + +  GV + + ++++A++DMY KCG  D A  +F  +
Sbjct: 350 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRV 409

Query: 385 P--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
               +    +NSMI G AQ+G    A+ ++ +L+   LKPD  TFV VL AC H+ L E 
Sbjct: 410 GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEE 469

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+  F+S+   +GI P ++HY CM++LLGR   +++A DL++ +P + NS+IW  LLS C
Sbjct: 470 GKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSAC 529

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              G++K GE+A + L E+E  +   Y++LSN+ A   +WE+   +R  M+   ++K   
Sbjct: 530 RTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPG 589

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
           +S+IE+   +H+FV+ D++HP+ + I   L  +  +L+ AG+ PNT  V+ D  EEEK  
Sbjct: 590 WSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKES 649

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            + YHSEKLALA+ L+      T IRI+KN+R+C DCH   K  S+I GR I +RD+ RF
Sbjct: 650 VVSYHSEKLALAFGLMYCSPTDT-IRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRF 708

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G+CSC D W
Sbjct: 709 HHFRNGSCSCMDFW 722


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/628 (36%), Positives = 360/628 (57%), Gaps = 45/628 (7%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIA 129
           + G L  A + F   P +   ++N LL+ +AR+ G + D R LFD++P  D+VSYNT ++
Sbjct: 29  RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLS 88

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
                G +  A ++F+ M      P                                   
Sbjct: 89  CHFASGDADGARRLFASM------PVR--------------------------------- 109

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V   N +    +K G +++A+ +F  M  RN VSWN M+SG+  +       + F+   
Sbjct: 110 DVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAP 169

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
             G   D V  + ++      G +  A   F  +  ++ V W  ++ GY +N   +DAL 
Sbjct: 170 EKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALR 226

Query: 310 LFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
           LF  M+ E +V+P+  ++SSV+  C+ L++L  G+ +H   + L +  +L V ++L+ MY
Sbjct: 227 LFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMY 286

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           CKCG    A  +F  M TR+VV+WN+MI+GYAQ+G   EA+ L++++  E ++P+  TFV
Sbjct: 287 CKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFV 346

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           +VL+AC+H  L + G   F+ +  ++GI P +DHY+CM++LL R+  +++AVDLI+S+P 
Sbjct: 347 AVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPF 406

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +P+   + TLL+ C +  +++  E+AA  L E +P +AG Y+ L+N+YA   +W+DV+ +
Sbjct: 407 EPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRV 466

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           R  MK   V K   YSWIEI   +H+F S DR HP+  +I+E+L +L ++++  G+ P+ 
Sbjct: 467 RRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDL 526

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
             VLHD  E  KV+ +  HSEKLA+++ LI    G+T +RI KN+RVCGDCH   K  S 
Sbjct: 527 DFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMT-LRIFKNLRVCGDCHNAAKVISK 585

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I  R IILRD+ RFHHF GG+CSC D W
Sbjct: 586 IEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 193/434 (44%), Gaps = 52/434 (11%)

Query: 58  TTFLHNRLLHFYAKS-GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           TT  +N LL  YA++ G+L  AR LFD++P  D +S+N LLS H  SG     R LF  M
Sbjct: 47  TTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASM 106

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P+RD VS+NT ++G +  G   EA  VF  M         +  + +  AC++  D+   +
Sbjct: 107 PVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR--NSVSWNAMVSGFACSR--DMSAAE 162

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +           G+  +  A+   Y   G + KA   F+ M  RNLVSWN +++GY+KN 
Sbjct: 163 EWFRN---APEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNS 219

Query: 237 QPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC---------------------------- 267
                + LF+ M +   + P+  T+S++L  C                            
Sbjct: 220 HADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVG 279

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G +  A +LF  +  +D V W  MI GY Q+G  ++A+ LF  M  E V 
Sbjct: 280 TSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVE 339

Query: 321 PDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           P+  +  +V+++C        G +   G   + G++  +   S ++D+ C+ G  + A  
Sbjct: 340 PNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +   MP     S    +    +  ++LE   L    L E     +  +V +      A++
Sbjct: 400 LIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQL------ANI 453

Query: 440 FERGQNHFDSISAV 453
           +  G N +D +S V
Sbjct: 454 YA-GANQWDDVSRV 466



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 46/352 (13%)

Query: 37  NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL 96
            D + A+RL + M +           N ++   +KSG +  A+ +F  MP+R+ +SWNA+
Sbjct: 94  GDADGARRLFASMPVR-----DVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAM 148

Query: 97  LSAHARS--------------------------------GSVQDLRALFDKMPIRDSVSY 124
           +S  A S                                G+V      F+ MP+R+ VS+
Sbjct: 149 VSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSW 208

Query: 125 NTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           N  +AG+     + +AL++F  M ++   +P   T  S L  C+ L  L  GKQIH   +
Sbjct: 209 NAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCM 268

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              L  N+ V  +L  MY K G++  A  LF  M+ R++V+WN MISGY ++G  K+ I+
Sbjct: 269 KLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAIN 328

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGY 298
           LF+ M+  G+ P+ +T   +L AC  TG  D   R F  ++E   +      ++ M+   
Sbjct: 329 LFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLL 388

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            + GK E A+ L   M  E   P   +  +++++C    +L   ++  GK +
Sbjct: 389 CRAGKLERAVDLIRSMPFE---PHPSAYGTLLAACRVYKNLEFAELAAGKLI 437


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 365/644 (56%), Gaps = 38/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  N LLS + +   + D R +FDKM +RD+VS+NT I G++  G   E++++F  M
Sbjct: 249 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM 308

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             ++F+P   T  S L AC  L DL  GK +H  ++      +    N L +MYAK G +
Sbjct: 309 V-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 367

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------- 259
             ++ +F  M  ++ VSWN MI+ Y++NG   + + LF+ M+   + PD VT        
Sbjct: 368 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMS 426

Query: 260 --------------------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWT 292
                                     VSN L   + + G + D+ ++F  +K +D + W 
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 486

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+I     +      L + + M +E V PD  ++ S++  C+ LA+   G+ +HG    L
Sbjct: 487 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 546

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G++ D+ V + LI+MY KCG   +++ VF +M T++VV+W ++I+     G+  +A+  +
Sbjct: 547 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 606

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++    + PD   FV+++ AC H+ L E G N+F  +   + I P ++HYAC+++LL R
Sbjct: 607 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 666

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S+ +DKA D I S+P KP+S IW  LLS C M GD +  E  +  + EL P + G Y+++
Sbjct: 667 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLV 726

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YAA G+W+ V SIR S+K++ +KK    SW+EI NKV+ F +  +   + E + + L
Sbjct: 727 SNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLL 786

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L   + + G+  N + VLHD  E+EK   +C HSE+LA+A+ L+    G TP+++MKN
Sbjct: 787 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPG-TPLQVMKN 845

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH   K+ S I+ R +++RD+NRFH F  G CSC D W
Sbjct: 846 LRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  229 bits (584), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 254/520 (48%), Gaps = 81/520 (15%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  +   +N+ I    + G   EAL ++S  Q+ R +P  YT  S +NACA LLD    K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            IH +++    G ++++ NAL DMY +  ++DKAR +F+ M  R++VSWN +ISGY  NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---------------------- 274
              + ++++   + LG+ PD  T+S++L AC   G ++                      
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 275 -------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                        D  R+F  +  +D V W TMI GY+Q G  E+++ LF EM+++  +P
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKP 314

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +I+S++ +C  L  L  G+ VH   +  G + D   S+ LI+MY KCG    +  VF
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 374

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
           + M  ++ VSWNSMIN Y QNG   EA+ L+ K+++ ++KPDS T+V +LS         
Sbjct: 375 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLH 433

Query: 435 ----LHADLFERGQNH------------------------FDSISAVHGITPSLDHYACM 466
               LH DL + G N                         F+++ A   IT +    +C+
Sbjct: 434 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 493

Query: 467 INLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
                 S D +  + +I  +  +   P+     ++L VC++    + G+     +F+L  
Sbjct: 494 -----HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 548

Query: 524 INAGPYI-MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  P   +L  MY+ CG   +   +   MK+K+V  + A
Sbjct: 549 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTA 588



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 152/556 (27%), Positives = 254/556 (45%), Gaps = 80/556 (14%)

Query: 13  TLYSRGQAA--TEEAYT--QLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLH 67
           +LYS  Q      + YT   ++  C  + D E+AK +    +D+ F   +  ++ N L+ 
Sbjct: 101 SLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGF--GSDLYIGNALID 158

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y +   L  AR +F++MPLRD++SWN+L+S                             
Sbjct: 159 MYCRFNDLDKARKVFEEMPLRDVVSWNSLIS----------------------------- 189

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
             G+   G+  EAL+++ R +     P  YT  S L AC  L  +  G  IHG I    +
Sbjct: 190 --GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGI 247

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +V V N L  MY K   +   R +FD+M  R+ VSWN MI GY + G  ++ I LF E
Sbjct: 248 KKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFME 307

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRID--------------------------------- 274
           M +    PD +T+++IL AC   G ++                                 
Sbjct: 308 M-VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGN 366

Query: 275 --DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
              +  +F  +K KD+V W +MI  Y QNG  ++A+ LF +M+  DV+PD  +   ++S 
Sbjct: 367 LLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSM 425

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
             +L  L+ G+ +H     +G + +++VS+ L+DMY KCG   D+  VF  M  R++++W
Sbjct: 426 STQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITW 485

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N++I     +      L +  ++  E + PD  T +S+L  C       +G+     I  
Sbjct: 486 NTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFK 545

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
           + G+   +     +I +  +   +  +  + K +  K + + W+ L+S C M G+   G+
Sbjct: 546 L-GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GK 600

Query: 513 MAARHLFELEPINAGP 528
            A R   E+E     P
Sbjct: 601 KAVRAFGEMEAAGIVP 616



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           SIS  ++S A    L+    +H   + LG+   ++ S+ LI  Y        +++VF + 
Sbjct: 18  SISRALASAATTTQLHK---LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLA 74

Query: 385 -PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            P+ NV  WNS+I     NG   EAL+LY +  +  L+PD++TF SV++AC     FE  
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++  D +  + G    L     +I++  R +D+DKA  + + +P + + + W++L+S
Sbjct: 135 KSIHDRVLDM-GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLIS 189


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/643 (34%), Positives = 364/643 (56%), Gaps = 36/643 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ +A  G ++D   +F  M  +D VS+NT ++G        +A+  F  MQ
Sbjct: 285 DVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQ 344

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   + ++ + A  +  +L  G ++H   +   +  N+ + N+L DMY K   + 
Sbjct: 345 DSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVK 404

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
                F+ M  ++L+SW  +I+GY +N      ++L +++QL  ++ D + + +IL AC 
Sbjct: 405 YMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACS 464

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             +   +D A  +F  I  KD V WT+M
Sbjct: 465 GLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSM 524

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I     NG   +AL LFN ++  ++ PD  ++ SV+ + A L+SL  G+ +HG  +  G 
Sbjct: 525 ITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGF 584

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             + L++++L+DMY +CG  ++A  +FN +  R+++ W SMIN    +G   +A+ L+ K
Sbjct: 585 FLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSK 644

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  EN+ PD  TF+++L AC H+ L   G+ HF+ +   + + P  +HYAC+++LL RS+
Sbjct: 645 MTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSN 704

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A   ++++P +P++ +W  LL  C +  +   GE+AA+ L +L   N+G Y+++SN
Sbjct: 705 SLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSN 764

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            +AA GRW DV  +RS MK   +KK    SWIE++NK+H F++ D++HP+   IY +L++
Sbjct: 765 TFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQ 824

Query: 595 LIKKLQE-AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
             K L+E  G+   TKLV HD  EEEK + +  HSE+LAL Y L+    G T +RI KN+
Sbjct: 825 FTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALGYGLLVTSKG-TCLRITKNL 883

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F K AS+I  RT+++RD++RFHHF  G CSC D W
Sbjct: 884 RICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDFW 926



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 157/594 (26%), Positives = 258/594 (43%), Gaps = 95/594 (15%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D L +  +   ++AY+Q +  C     +   ++L +H        ++ FL  + +H Y K
Sbjct: 35  DPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGK 94

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            G  +                               D   +FDKM  R   ++N  I   
Sbjct: 95  CGSFY-------------------------------DAVKVFDKMSERTIFTWNAMIGAC 123

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
            + G   EA++++  M+        +T    L AC    + R G +IHG  V    GG V
Sbjct: 124 VSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFV 183

Query: 192 FVRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           FV NAL  MYAK G++  AR LFD   M   + VSWN +IS ++  G+  + + LF+ MQ
Sbjct: 184 FVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQ 243

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
            +G+  +  T  + L AC                                      G+++
Sbjct: 244 EVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQME 303

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           DA R+F  +  KD V W T++ G  QN    DA+  F +M     +PD+ S+ +++++  
Sbjct: 304 DAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASG 363

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           + A+L  G  VH  A+  G+D ++ + ++LIDMY KC       + F  MP ++++SW +
Sbjct: 364 RSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTT 423

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I GYAQN   L+AL L  K+  E +  D     S+L AC        G      I  +H
Sbjct: 424 IIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC-------SGLKSEKLIKEIH 476

Query: 455 GIT-----PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           G         +     ++N+ G  + VD A  + +S+  K + + W+++++ C   G   
Sbjct: 477 GYVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSK-DIVSWTSMITCCVHNGL-- 533

Query: 510 HGEMAARHLF-ELEPINAGP--YIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
              + A  LF  L   N  P    ++S +YAA       A++ S  K K +  F
Sbjct: 534 --AIEALELFNSLIETNIEPDLITLVSVLYAA-------AALSSLKKGKEIHGF 578



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 212/463 (45%), Gaps = 56/463 (12%)

Query: 125 NTAIAGFANKGFS-REALQVFSRMQKD------RFEPTDYTHVSALNACAQLLDLRRGKQ 177
           N  +  F+++  S +EA Q  +    D      RF P    +  AL  CA    L +G+Q
Sbjct: 9   NHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRF-PLQQAYSQALELCASHKALPQGQQ 67

Query: 178 IHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +H   +   N   +VF+      MY K G    A  +FD+M+ R + +WN MI   +  G
Sbjct: 68  LHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAG 127

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
           +  + I+L++EM++LG++ D  T   +L AC                             
Sbjct: 128 RYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCN 187

Query: 268 ------FQTGRIDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                  + G +  A  LF   ++++ D V W ++I  +   G+  +AL LF  M    V
Sbjct: 188 ALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGV 247

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKCGVTDDA 377
             + ++  S + +C     +  G+ +H  AV+L  +   D+ VS+ALI MY  CG  +DA
Sbjct: 248 ESNTYTFVSALQACEGPTFIKIGRGIH--AVILKSNHFTDVYVSNALIAMYANCGQMEDA 305

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LH 436
             VF  M  ++ VSWN++++G  QN    +A+  +  +     KPD  + +++++A    
Sbjct: 306 ERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRS 365

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           A+L    + H  +I   HGI  ++     +I++ G+   V       + +P K + + W+
Sbjct: 366 ANLLAGMEVHAYAIK--HGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEK-DLISWT 422

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           T+++  A + +     +      +LE ++  P +M+ ++  AC
Sbjct: 423 TIIAGYA-QNECHLDALNLLRKVQLEKMDVDP-MMIGSILLAC 463



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 110/203 (54%)

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           K  L DI+  NA+++ +     V   R +F+ +  +D VS+ + I    + G + EAL++
Sbjct: 481 KGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALEL 540

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F+ + +   EP   T VS L A A L  L++GK+IHG ++         + N+L DMYA+
Sbjct: 541 FNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYAR 600

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G ++ AR +F+ +  R+L+ W  MI+    +G  K  IDLF +M    + PD +T   +
Sbjct: 601 CGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLAL 660

Query: 264 LGACFQTGRIDDAGRLFHVIKEK 286
           L AC  +G + +  + F ++K +
Sbjct: 661 LYACSHSGLVVEGKQHFEIMKNE 683



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-- 117
            + N L+  YA+ G +  AR++F+ +  RD+I W ++++A+   G  +D   LF KM   
Sbjct: 589 LIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDE 648

Query: 118 --IRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEP 154
             + D +++   +   ++ G   E  Q F  M+ + + EP
Sbjct: 649 NVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLEP 688


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/614 (37%), Positives = 351/614 (57%), Gaps = 43/614 (7%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           S S +  +    + G  +EAL   + + ++ +FE  D    + LN C     +R G+++H
Sbjct: 58  SFSPSPNLKTLCSSGQLKEALLQMAILGREVKFEGYD----TILNECVSQRAIREGQRVH 113

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             ++      +V++R  L  +Y K   +  AR +FD M  +N+VSW  MIS Y + G   
Sbjct: 114 THMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAF 173

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------------- 268
           + ++LF EM      P+  T + IL +C+                               
Sbjct: 174 EALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLL 233

Query: 269 ----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               ++GRI DA  +FH + E+D V  T +I GY Q G +E+AL LF ++  E +  +  
Sbjct: 234 DMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSV 293

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + +SV+++ + LA+L HG+ VH   +  G    +++ ++LIDMY KCG    A  +F+ M
Sbjct: 294 TYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSM 353

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERG 443
           P R  +SWN+M+ GY+++G   E L L+  + +EN +KPDS T+++VLS C H  L + G
Sbjct: 354 PERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMG 413

Query: 444 QNHF-DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
              F + ++   GI P + HY C+++LLGR+  V++A D IK +P  P + IW +LL  C
Sbjct: 414 LEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSC 473

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  D++ G +  + L ELEP NAG Y++LSN+YA+ G+WED+ +IR  M+ K V K   
Sbjct: 474 RVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPG 533

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SW+E+D  VH F + D THP  E + +++ +L  K +E G+ P+   VL+D  EE+K K
Sbjct: 534 RSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEK 593

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLALA+ LI  P G T IR++KN+R+C DCH F KF S +  RT+ILRD NRF
Sbjct: 594 VLLGHSEKLALAFGLIATPEGTT-IRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRF 652

Query: 683 HHFVGGNCSCKDNW 696
           H+ VGG CSC D W
Sbjct: 653 HNIVGGVCSCGDYW 666



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 119/476 (25%), Positives = 215/476 (45%), Gaps = 93/476 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L++A+  +   G+    E Y  ++ +C     +   +R+ +HM    Y P + +L  RL
Sbjct: 73  QLKEALLQMAILGREVKFEGYDTILNECVSQRAIREGQRVHTHMIKTCYLP-SVYLRTRL 131

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y K   L                                D R +FD+MP ++ VS+ 
Sbjct: 132 IVLYNKCDCL-------------------------------GDAREMFDEMPQKNVVSWT 160

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I+ ++ +GF+ EAL +F  M +   EP  +T  + L +C   L    G+QIH   +  
Sbjct: 161 AMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKR 220

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   ++FV ++L DMYAK G I  A  +F  +  R++V+   +ISGY + G  ++ + LF
Sbjct: 221 NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLF 280

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           +++Q+ G+N + VT +++L A                                     + 
Sbjct: 281 RQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKC 340

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSV 329
           G +  A R+F  + E+  + W  M+VGY+++G   + L LF  M  E+ V+PD  +  +V
Sbjct: 341 GNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAV 400

Query: 330 VSSCAKLASLYHGQV-----------VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +S C+      HGQ+           V+GK    G++ D+     ++D+  + G  ++A+
Sbjct: 401 LSGCS------HGQLEDMGLEIFYNMVNGKD---GIEPDIGHYGCVVDLLGRAGRVEEAF 451

Query: 379 TVFNMMP-TRNVVSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPDSFTFVSVLS 432
                MP       W S++ G  +   D+E  + +  KLL+  L+P++     +LS
Sbjct: 452 DFIKKMPFVPTAAIWGSLL-GSCRVHSDVEIGIIVGQKLLE--LEPENAGNYVILS 504


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 317/561 (56%), Gaps = 36/561 (6%)

Query: 171  DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            +L + +Q+H +  V  +  N+ V N L   Y+    +D A  LFD M  R+ VSW++M+ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 231  GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------------- 272
            G+ K G    C   F+E+   G  PD  T+  ++ AC      Q GR             
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 273  -----------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                             I+DA  LF  + E+D V WT MI GY + G   ++L+LF++M 
Sbjct: 870  DHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMR 929

Query: 316  SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
             E V PDK ++ +VV +CAKL +++  + +           D+++ +A+IDM+ KCG  +
Sbjct: 930  EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVE 989

Query: 376  DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
             A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +L+  + P+  T VS+L AC 
Sbjct: 990  SAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 1049

Query: 436  HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
            HA L E G   F  +   + +   + HY C+++LLGR+  +D+A+ LI S+  + +  +W
Sbjct: 1050 HAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLW 1109

Query: 496  STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
               L  C    D+   E AA  L EL+P N G YI+LSN+YA  GRWEDVA IR  M  +
Sbjct: 1110 GAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169

Query: 556  NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
             +KK   ++WIE+DNK H+F   D THP ++ IYE L  L  KL+  G+ P+T  VLHD 
Sbjct: 1170 RLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDV 1229

Query: 616  QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
             EE K+  +  HSEKLA+A+ LI  P   TPIRI+KN+RVCGDCH F K  S I GR II
Sbjct: 1230 DEELKIGILYTHSEKLAIAFGLIATPEH-TPIRIIKNLRVCGDCHTFCKLVSAITGRVII 1288

Query: 676  LRDSNRFHHFVGGNCSCKDNW 696
            +RD+NRFHHF  G CSC D W
Sbjct: 1289 VRDANRFHHFKEGACSCGDYW 1309



 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 203/539 (37%), Positives = 295/539 (54%), Gaps = 41/539 (7%)

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           R  P  Y  +SAL  C  L  +R   Q+H +  V  +  N+ V N L   Y+    +D A
Sbjct: 59  RLNPKFY--ISALVNCRNLTQVR---QVHAQASVHGMLENIVVANKLIYFYSYYRALDDA 113

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
             LFD M  R+ VSW++M+ G+ K G    C   F+E+   G  PD  T+  ++ AC   
Sbjct: 114 YGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL 173

Query: 268 --FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMI 295
              Q GR                              I+DA  LF  ++E+D V WT MI
Sbjct: 174 KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 233

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY + GK  ++L+LF +M  E V PDK ++ +VV +CAKL +++  +++          
Sbjct: 234 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ 293

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+++ +A+IDMY KCG  + A  +F+ M  +NV+SW++MI  Y  +GQ  +AL L+  +
Sbjct: 294 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMM 353

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           L   + PD  T  S+L AC HA L E G   F S+   + +   + HY C+++LLGR+  
Sbjct: 354 LSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGR 413

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A+ LIKS+  + +  +W   L  C    D+   E AA  L EL+  N G Y++LSN+
Sbjct: 414 LDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNI 473

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YA  GRWEDVA IR  M  + +KK   ++WIE+DNK H+F   D THP ++ IYE L  L
Sbjct: 474 YANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSL 533

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
             KL+  G+ P+T  VLHD  EE K+  +  HSEKLA+A+ LI  P   TPIRI+KN+R
Sbjct: 534 SNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEH-TPIRIIKNLR 591



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 162/334 (48%), Gaps = 36/334 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L +I+  N L+  ++   ++ D   LFD M +RDSVS++  + GFA  G        F  
Sbjct: 91  LENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRE 150

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + +    P +YT    + AC  L +L+ G+ IH  +    L  + FV  AL DMY K  E
Sbjct: 151 LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 210

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           I+ AR+LFD+M  R+LV+W +MI GY + G+  + + LF++M+  G+ PD+V +  ++ A
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 270

Query: 267 C--------------------FQ---------------TGRIDDAGRLFHVIKEKDNVCW 291
           C                    FQ                G ++ A  +F  ++EK+ + W
Sbjct: 271 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISW 330

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAV 350
           + MI  Y  +G+   AL LF  MLS  + PDK +++S++ +C+    +  G +       
Sbjct: 331 SAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWE 390

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              V  D+   + ++D+  + G  D+A  +   M
Sbjct: 391 DYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSM 424



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 141/283 (49%), Gaps = 35/283 (12%)

Query: 87   LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            L+++I  N L+  ++   ++ D   LFD M +RDSVS++  + GFA  G        F  
Sbjct: 767  LQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRE 826

Query: 147  MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
            + +    P +YT    + AC  L +L+ G+ IH  +    L  + FV  AL DMY K  E
Sbjct: 827  LIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 207  IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            I+ AR+LFD+M  R+LV+W +MI GY + G   + + LF +M+  G+ PD+V +  ++ A
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 267  CFQTG------RIDD-----------------------------AGRLFHVIKEKDNVCW 291
            C + G       IDD                             A  +F  ++EK+ + W
Sbjct: 947  CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 1006

Query: 292  TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            + MI  Y  +G+   AL LF  ML   + P+K ++ S++ +C+
Sbjct: 1007 SAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACS 1049



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 5/228 (2%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL+  + +   ++D R LFDKM  RD V++   I G+A  G + E+L +F +M+++   P
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 259

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                V+ + ACA+L  + + + I   I       +V +  A+ DMYAK G ++ AR +F
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           DRM  +N++SW+ MI+ Y  +GQ +K +DLF  M   G+ PD++T++++L AC   G ++
Sbjct: 320 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379

Query: 275 DAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSE 317
           +  R F  + E  +V      +T ++    + G+ ++AL L   M  E
Sbjct: 380 EGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIE 427



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 5/228 (2%)

Query: 95   ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            AL+  + +   ++D R LFDKM  RD V++   I G+A  G + E+L +F +M+++   P
Sbjct: 876  ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 935

Query: 155  TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
                 V+ + ACA+L  + + + I   I       +V +  A+ DM+AK G ++ AR +F
Sbjct: 936  DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995

Query: 215  DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            DRM  +N++SW+ MI+ Y  +GQ +K +DLF  M   G+ P+++T+ ++L AC   G ++
Sbjct: 996  DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055

Query: 275  DAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSE 317
            +  R F  + E  +V      +T ++    + G+ ++AL L   M  E
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXE 1103



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 133/305 (43%), Gaps = 59/305 (19%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
            N +EE +   F + L+      KF IS++V+ C  L  +   + VH +A V G+ ++++
Sbjct: 45  HNREEESSKFHFLQRLNP-----KFYISALVN-CRNLTQV---RQVHAQASVHGMLENIV 95

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V++ LI  Y      DDA+ +F+ M  R+ VSW+ M+ G+A+ G  +     + +L++  
Sbjct: 96  VANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCG 155

Query: 420 LKPDSFTFVSVLSACLHADLFERGQ--NHFDSISAVHGITPSLDHYAC--MINLLGRSSD 475
            +PD++T   V+ AC      + G+  +H      V+     LDH+ C  ++++  +  +
Sbjct: 156 ARPDNYTLPFVIRACRDLKNLQMGRLIHHI-----VYKFGLDLDHFVCAALVDMYVKCRE 210

Query: 476 VDKAVDLIKSLPHK----------------------------------PNSLIWSTLLSV 501
           ++ A  L   +  +                                  P+ +   T++  
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 270

Query: 502 CAMKGDIKHGEM----AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           CA  G +    +      R  F+L+ I     I   +MYA CG  E    I   M+ KNV
Sbjct: 271 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI---DMYAKCGCVESAREIFDRMEEKNV 327

Query: 558 KKFAA 562
             ++A
Sbjct: 328 ISWSA 332


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 246/711 (34%), Positives = 381/711 (53%), Gaps = 74/711 (10%)

Query: 20  AATEEAYTQLVLDCT-RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           AA    Y  L   C+ R+ + +  K +Q H+ L     +  ++ N L++ YA  G L  A
Sbjct: 123 AADNYTYPILFQSCSIRLAEFD-GKCIQDHV-LKVGFDSDVYIQNTLINMYAVCGNLSDA 180

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           R +FD   + D++SWN++L+ +   G+V++ + ++D+MP R+ ++ N+ I  F  KG   
Sbjct: 181 RKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVE 240

Query: 139 EALQVFSRM----------------QKDRFEPT---------------DYTHVSALNACA 167
           EA ++F+ M                Q + +E                 +   +S L+AC+
Sbjct: 241 EACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACS 300

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
           +LL +  GK +HG +V   +   V ++NAL  MY+   E+  A+ LF      + +SWN 
Sbjct: 301 RLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNS 360

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD 287
           MISGY+K G+ +K   LF  M      PD+  VS                          
Sbjct: 361 MISGYVKCGEIEKARALFDSM------PDKDNVS-------------------------- 388

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
              W+ MI GY Q  +  + L+LF EM  E  +PD+  + SV+S+C  LA+L  G+ +H 
Sbjct: 389 ---WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHA 445

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
                G+  ++++ + LI+MY K G  +DA  VF  +  + V +WN++I G A NG   +
Sbjct: 446 YIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDK 505

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           +L  + ++ +  + P+  TFV+VL AC H  L + G  HF+S+   H I P++ HY CM+
Sbjct: 506 SLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMV 565

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  + +A +LI+S+P  P+   W  LL  C   GD + GE   R L EL P + G
Sbjct: 566 DLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDG 625

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
             ++LSN+YA+ G W DV  +R  M+   V K    S IE   +VH+F++ D+THP+ E 
Sbjct: 626 FNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEH 685

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK--KPHGVT 645
           I   L ++ KKL+  G++P+T+ V  D  EEEK  ++  HSEKLA+A+ LI    P   T
Sbjct: 686 IEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPP---T 742

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           PIRI+KN+R+C DCH   K  S    R I++RD +RFHHF  G+CSC D W
Sbjct: 743 PIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 212/415 (51%), Gaps = 41/415 (9%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           NT + G+  +    +A+ V+  M +      +YT+     +C+  L    GK I   ++ 
Sbjct: 95  NTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLK 154

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                +V+++N L +MYA  G +  AR +FD  +  ++VSWN M++GY+  G  ++  D+
Sbjct: 155 VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDV 214

Query: 245 FQEMQLLGLNPDE-VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           +  M      P+  V  SN +   F + G +++A +LF+ +K+KD V W+ +I  Y QN 
Sbjct: 215 YDRM------PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNE 268

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             E+ALILF EM +  +  D+  + SV+S+C++L  +  G++VHG  V +G++  + + +
Sbjct: 269 MYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQN 328

Query: 363 ALIDM-------------------------------YCKCGVTDDAWTVFNMMPTRNVVS 391
           ALI M                               Y KCG  + A  +F+ MP ++ VS
Sbjct: 329 ALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVS 388

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W++MI+GYAQ  +  E L L+ ++  E  KPD    VSV+SAC H    ++G+     I 
Sbjct: 389 WSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIR 448

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +G+  ++     +IN+  +   V+ A+++ K L  K  S  W+ L+   AM G
Sbjct: 449 K-NGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVS-TWNALILGLAMNG 501



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 6/181 (3%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTG----RIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
           +  +M L G   D    S +L   F T      I+ + ++F  I+  +     TM+ GY 
Sbjct: 45  ILSQMILSGFFKDSFAASRLLK--FSTELPFININQSYQIFSHIENPNGFICNTMMKGYM 102

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q      A+ ++  ML  +V  D ++   +  SC+   + + G+ +    + +G D D+ 
Sbjct: 103 QRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVY 162

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + LI+MY  CG   DA  VF+     ++VSWNSM+ GY   G   EA  +YD++ + N
Sbjct: 163 IQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERN 222

Query: 420 L 420
           +
Sbjct: 223 V 223



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 89/194 (45%), Gaps = 17/194 (8%)

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           + ++ +F+ +   N    N+M+ GY Q     +A+ +Y  +L+ N+  D++T+  +  +C
Sbjct: 77  NQSYQIFSHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSC 136

Query: 435 -LHADLFERG--QNHFDSI---SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            +    F+    Q+H   +   S V+     ++ YA   NL    SD  K  D    L  
Sbjct: 137 SIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNL----SDARKVFDGSSVL-- 190

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
             + + W+++L+   + G+++  +     + E   I +   I+L   +   G  E+   +
Sbjct: 191 --DMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVL---FGKKGNVEEACKL 245

Query: 549 RSSMKSKNVKKFAA 562
            + MK K++  ++A
Sbjct: 246 FNEMKQKDLVSWSA 259


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/638 (35%), Positives = 357/638 (55%), Gaps = 37/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+S +A+S  ++D   +FD+MP RD +S+N+ I G A+ G   +A+++F RM  +  E
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T +S + AC Q      G  +HG  V   L     + NAL DMY+   +      +
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKI 142

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  M  +N+VSW  MI+ Y + G   K   LFQEM L G+ PD   +++ L A       
Sbjct: 143 FRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESL 202

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A  +F  + +KD + W T+I GY
Sbjct: 203 KHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGY 262

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +++    +A  LFNEML + +RP+  +++ ++ + A L+SL  G+ +H  AV  G  +D 
Sbjct: 263 SRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDN 321

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++AL+DMY KCG    A  +F+M+  +N++SW  MI GY  +G+  +A+AL++++   
Sbjct: 322 FVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGS 381

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++PD+ +F ++L AC H+ L + G   F+++   H I P L HYACM++LL  + ++ +
Sbjct: 382 GIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKE 441

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+++P +P+S IW +LL  C +  ++K  E  A  +FELEP N G Y++L+N+YA 
Sbjct: 442 AYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAE 501

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RWE V  +++ +  + +++    SWIE+  K H F +E+R HP+   I E L  + ++
Sbjct: 502 AERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARR 561

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +QE G  P  K  L    +    +++C HS KLA+A+ ++    G  PIR+ KN RVC  
Sbjct: 562 MQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQG-RPIRVTKNSRVCSH 620

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S + GR IILRDSNRFHHF  G CSC+  W
Sbjct: 621 CHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/305 (32%), Positives = 159/305 (52%), Gaps = 36/305 (11%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G  +HG +V    G    V NAL   YAK   I+ A  +FD M  R+++SWN +I G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------TGRIDDAG- 277
           NG   K ++LF  M L G   D  T+ +++ AC Q                TG I +   
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 278 ------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                             ++F  +++K+ V WT MI  YT+ G  +    LF EM  E +
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           RPD F+I+S + + A   SL HG+ VHG A+  G+++ L V++AL++MY KCG  ++A  
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+ +  ++ +SWN++I GY+++    EA  L++++L + L+P++ T   +L A      
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSS 301

Query: 440 FERGQ 444
            ERG+
Sbjct: 302 LERGR 306



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 131/240 (54%), Gaps = 14/240 (5%)

Query: 51  LNFYEPNTTFLHNRLLHFYA-KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL 109
           L+ +  N +  H + +H YA ++G       + + +P+      NAL+  + + G +++ 
Sbjct: 193 LDAFAGNESLKHGKSVHGYAIRNG-------IEEVLPVA-----NALMEMYVKCGYMEEA 240

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R +FD +  +D++S+NT I G++    + EA  +F+ M   +  P   T    L A A L
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLL-QLRPNAVTMACILPAAASL 299

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             L RG+++H   V      + FV NAL DMY K G +  AR LFD + N+NL+SW +MI
Sbjct: 300 SSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMI 359

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +GY  +G+ +  I LF++M+  G+ PD  + S IL AC  +G  D+  R F+ ++ +  +
Sbjct: 360 AGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRI 419



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G VVHG  V  G      V +ALI  Y K    +DA  VF+ MP R+++SWNS+I G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV-------H 454
           NG   +A+ L+ ++  E  + DS T +SV+ AC+        Q+H+  I  V        
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACV--------QSHYSFIGGVVHGYSVRT 114

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G+         ++++    SD      + +++  K N + W+ +++
Sbjct: 115 GLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQK-NVVSWTAMIT 159


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/561 (37%), Positives = 341/561 (60%), Gaps = 5/561 (0%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
            L  F  +    F+P   +  SAL A  +L   + GK+IHG I+  NL  +V+V  +L D
Sbjct: 2   VLTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVD 61

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K   ++KA+ +  R  N+N+ +WN +ISGY   GQ  + + L  +M   G+ PD VT
Sbjct: 62  MYVKNDCLEKAQAVLHRAKNKNVCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVT 121

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDALILFNEML 315
            + ++      GRID+A  + + IK      + V WT +I G +QN K  DAL +F++M 
Sbjct: 122 WNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFSQMQ 181

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           +E+V+P+  +I S++ +CA  + L  G+ +H  ++ LG  DD+ V++ALIDMY + G   
Sbjct: 182 AENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLK 241

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A+ VFN +  + +  WN M+ GYA +    E + LYDK+ + +++PD+ TF ++LSAC 
Sbjct: 242 VAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSACK 301

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           ++ L + G  +FDS+   + I P+++HY CM++LLG+S  +D+A   I+++P KP++ IW
Sbjct: 302 NSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDASIW 361

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
             LL+ C +  +IK  E+AAR LF++EP N+  Y+++ N+Y++  RW  V  ++ SM   
Sbjct: 362 GALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSMTVL 421

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            +K    +SW +++  +H F +E R HPE   IY EL +LI ++++ G++P+   V  + 
Sbjct: 422 AMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVCQNI 481

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
            + EK K +  H+EKLA+ Y ++K   G +PIRI+KN R+C DCH   K+ S +  R I+
Sbjct: 482 DDNEKEKILMSHTEKLAMVYGVMKMKGG-SPIRIVKNTRICFDCHTVAKYISLVRKREIL 540

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           LRD  RFHHF  G C+C D W
Sbjct: 541 LRDGGRFHHFKNGKCACNDRW 561



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 145/284 (51%), Gaps = 16/284 (5%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMP----LRDIISWNALLSAHARSGSVQDLRALFDKMP- 117
           N L+  Y+  G+   A  L ++M       D+++WN L+S ++  G + +   + +++  
Sbjct: 88  NSLISGYSFKGQFGEAVKLLNQMVEEGITPDLVTWNGLVSGYSMQGRIDEALTIINRIKS 147

Query: 118 ---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                + VS+   I+G +      +AL++FS+MQ +  +P   T  S L ACA    L++
Sbjct: 148 SGITPNVVSWTALISGCSQNEKYMDALKIFSQMQAENVKPNSTTICSLLCACAGPSLLKK 207

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G+++H   +      +++V  AL DMY++ G++  A  +F+++  + L  WN M+ GY  
Sbjct: 208 GEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAI 267

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC---- 290
           +   ++ + L+ +M+   + PD +T + +L AC  +G +D+  + F  ++E  N+     
Sbjct: 268 HSHGEEVMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQEDYNIVPTIE 327

Query: 291 -WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            +  M+    ++G  ++A      M    ++PD     ++++SC
Sbjct: 328 HYCCMVDLLGKSGFLDEASHFIETM---PIKPDASIWGALLASC 368



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 6/106 (5%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           M L F +    ++   L+  Y+++GKL  A ++F+K+  + +  WN ++  +A     ++
Sbjct: 216 MKLGFVD--DIYVATALIDMYSEAGKLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEE 273

Query: 109 LRALFDKMPIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           +  L+DKM  R    D++++   ++   N G   E  + F  MQ+D
Sbjct: 274 VMILYDKMRERHIRPDAITFTALLSACKNSGLVDEGWKYFDSMQED 319


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 350/626 (55%), Gaps = 42/626 (6%)

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNAC 166
           D R +FD +P  D++ +NT +AG        EAL+ F RM    R  P   T  S+L A 
Sbjct: 167 DARKVFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           A+   +  G+ +HG  V   L  +  V   L  +Y+K G++D A++LFDRM+N +LV++N
Sbjct: 223 AEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV-----------SNILGACFQT----G 271
            +ISGY  NG  +  ++LF+E+   G  P+  T+             +L  C        
Sbjct: 283 ALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKA 342

Query: 272 RID--------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           R+D                     A  +F  + EK    W  MI GY QNG  E A+ LF
Sbjct: 343 RLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALF 402

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             M   +V+P+  +ISS +S+CA L +L  G+ VH       ++ ++ V +ALIDMY KC
Sbjct: 403 QLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKC 462

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   +A ++F+ M  +NVVSWN+MI+GY  +GQ  EAL LY  +L   + P S TF+SV+
Sbjct: 463 GSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVI 522

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP- 490
            AC H  L + GQ  F  ++  + ITP ++H  CM++LLGR+  +++A++LI   P    
Sbjct: 523 YACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAI 582

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
              +W  LL  C +  +    ++A++ LFEL+  NAG Y++LSN+Y +   + + A +R 
Sbjct: 583 GPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQ 642

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
             K++ + K    + IEI ++ H F++ D  HP++E IY  L +L  K+ EAG+ P T+ 
Sbjct: 643 EAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEA 702

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
            L+D +EEEK   +  HSEKLA+A+ L+    G T IRI+KN+RVC DCH   KF S + 
Sbjct: 703 ALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPG-TEIRIIKNLRVCLDCHNATKFISKVT 761

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
            R I++RD++RFHHF  G CSC D W
Sbjct: 762 QRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 155/306 (50%), Gaps = 10/306 (3%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD- 83
           AY  L+   +    VE +  L   +  + + PN++ L   ++  Y+  G    AR L   
Sbjct: 280 AYNALISGYSVNGMVESSVELFKELTASGWRPNSSTL-VAVIPVYSPFGHELLARCLHAF 338

Query: 84  --KMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
             K  L  D +   AL + + R   ++  R++FD M  +   S+N  I+G+A  G +  A
Sbjct: 339 VVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMA 398

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           + +F  MQ+   +P   T  S L+ACA L  L  GK +H  I    L  NV+V  AL DM
Sbjct: 399 VALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDM 458

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YAK G I +AR +FDRM+N+N+VSWN MISGY  +GQ  + + L+++M    + P   T 
Sbjct: 459 YAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTF 518

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEML 315
            +++ AC   G +D+  ++F V+  +  +       T M+    + GK  +AL L +E  
Sbjct: 519 LSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFP 578

Query: 316 SEDVRP 321
              + P
Sbjct: 579 QSAIGP 584



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 170/378 (44%), Gaps = 54/378 (14%)

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           D    + +HG  V      + FV +AL  +Y K    D AR +FD + + + + WN +++
Sbjct: 129 DAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLA 188

Query: 231 GYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNIL-----------GACF---------- 268
           G   +    + ++ F  M   G + PD  T+++ L           G C           
Sbjct: 189 GLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLA 244

Query: 269 --------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                         + G +D A  LF  +   D V +  +I GY+ NG  E ++ LF E+
Sbjct: 245 EHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKEL 304

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            +   RP+  ++ +V+   +        + +H   V   +D D LVS+AL  +YC+    
Sbjct: 305 TASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           + A ++F+ M  + + SWN+MI+GYAQNG    A+AL+  + + N++P+  T  S LSAC
Sbjct: 365 ESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC 424

Query: 435 LHADLFERGQNHFDSISA------VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            H      G+     IS       V+ +T  +D YA       +   + +A  +   + +
Sbjct: 425 AHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYA-------KCGSIAEARSIFDRMDN 477

Query: 489 KPNSLIWSTLLSVCAMKG 506
           K N + W+ ++S   + G
Sbjct: 478 K-NVVSWNAMISGYGLHG 494



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 166/391 (42%), Gaps = 82/391 (20%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y+K G +  A+ LFD+M   D++++NAL+S                          
Sbjct: 253 LMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALIS-------------------------- 286

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                G++  G    ++++F  +    + P   T V+ +   +        + +H  +V 
Sbjct: 287 -----GYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVK 341

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V  ALT +Y +  +++ AR +FD M  + + SWN MISGY +NG  +  + L
Sbjct: 342 ARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVAL 401

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           FQ MQ L + P+ +T+S+ L AC                                    +
Sbjct: 402 FQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAK 461

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I +A  +F  +  K+ V W  MI GY  +G+  +AL L+ +ML   + P   +  SV
Sbjct: 462 CGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSV 521

Query: 330 VSSCAKLASLYHGQVV-HGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVFN 382
           + +C+      HG +V  G+ V   + ++  ++      + ++D+  + G  ++A  + +
Sbjct: 522 IYACS------HGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELIS 575

Query: 383 MMPTRNVVS--WNSMING-YAQNGQDLEALA 410
             P   +    W +++         DL  LA
Sbjct: 576 EFPQSAIGPGVWGALLGACMVHKNSDLAKLA 606



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 109/260 (41%), Gaps = 47/260 (18%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
            + +HG +V  G   D  V+SAL  +Y K    DDA  VF+ +P+ + + WN+++ G   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPG 192

Query: 402 NGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQ------------NHFD 448
           +    EAL  + +++    ++PDS T  S L A   A     G+             H  
Sbjct: 193 S----EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 449 SISAVHGI------------------TPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-- 488
            ++ +  +                   P L  Y  +I+    +  V+ +V+L K L    
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308

Query: 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAAR--HLFELEP---INAGPYIMLSNMYAACGRW 542
            +PNS   STL++V  +     H E+ AR  H F ++     +A     L+ +Y      
Sbjct: 309 WRPNS---STLVAVIPVYSPFGH-ELLARCLHAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 543 EDVASIRSSMKSKNVKKFAA 562
           E   SI  +M  K ++ + A
Sbjct: 365 ESARSIFDAMLEKTMESWNA 384


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/641 (35%), Positives = 357/641 (55%), Gaps = 40/641 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA-NKGFSREALQVFSRMQKDRF 152
           N L+  + +     D  A+F  +  ++  S+   +A FA N+ F R  L  F  M     
Sbjct: 14  NLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWL-FFRGMLLQGI 72

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P +      L+AC    ++  G+ I   I+   +     V+ AL  +Y K G    A  
Sbjct: 73  NPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAAS 132

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
           +F RM++R++V+W+ M++ Y +NG P++ + LF++M L G+ P++VT+ + L AC     
Sbjct: 133 VFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGD 192

Query: 269 -------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          + GRI+ A   F  I EK+ V W+ +   
Sbjct: 193 LRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAA 252

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VD 355
           Y +N +  DA+ + + M  E + P+  +  SV+ +CA +A+L  G+ +H +  VLG  ++
Sbjct: 253 YARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLE 312

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V +AL++MY KCG    A  +F+ +   ++V WNS+I   AQ+GQ  +AL L++++
Sbjct: 313 SDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERM 372

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
             E L+P   TF SVL AC HA + ++G+ HF S    HGI P  +H+ CM++LLGR+  
Sbjct: 373 RLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGW 432

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +  + DL+  +P +P+ + W   L  C    ++     AA +LF+L+P    PY++LSNM
Sbjct: 433 IVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNM 492

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YA  GRW DVA +R +M+     K A  SWIE+ ++VH+F+S D  HP    I+ EL +L
Sbjct: 493 YAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRL 552

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
            K ++ AG+ P+T++VLHD ++E K   + YHSEKLA+A+ L+  P G +PIR++KN+RV
Sbjct: 553 TKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEG-SPIRVVKNLRV 611

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH   KF S ++ R I++RD NRFH F  G CSC D W
Sbjct: 612 CNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 172/409 (42%), Gaps = 79/409 (19%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           CT   ++ + + +Q  + L       + +   L+  Y K G    A  +F +M  RD+++
Sbjct: 86  CTDAREITIGRSIQLAI-LGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVA 144

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W+A+++A+AR+G                                 REAL +F +M  D  
Sbjct: 145 WSAMVAAYARNGH-------------------------------PREALGLFRQMDLDGV 173

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T VS L+ACA L DLR G  +H ++    +   V V  AL ++Y K G I+ A  
Sbjct: 174 APNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAE 233

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
            F ++  +N+V+W+ + + Y +N + +  I +   M L GL P+  T  ++L AC     
Sbjct: 234 AFGQIVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAA 293

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G +  AG +F  I   D V W ++I
Sbjct: 294 LKQGRRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLI 353

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
               Q+G+ E AL LF  M  E ++P   + +SV+ +C+    L  G+    K  V  + 
Sbjct: 354 ATNAQHGQTEKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGR----KHFVSFIG 409

Query: 356 DDLLVSSA-----LIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           D  +   A     ++D+  + G   D+  +   MP   + V+W + +  
Sbjct: 410 DHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGA 458



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 117/292 (40%), Gaps = 52/292 (17%)

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           LG   +  + + LID+Y KC   DDA  VF+ + ++NV SW  M+  +A+N         
Sbjct: 4   LGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLF 63

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQN----------HFDSI--SAVHGITPS 459
           +  +L + + P        LSAC  A     G++            +SI  +A+  +   
Sbjct: 64  FRGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGK 123

Query: 460 LDH------------------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTL 498
           L H                  ++ M+    R+    +A+ L + +      PN +   + 
Sbjct: 124 LGHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSG 183

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKN 556
           L  CA  GD++ G +  + + E + I +G  +   L N+Y  CGR E  A     +  KN
Sbjct: 184 LDACASLGDLRSGALMHQRV-EAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKN 242

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           V  ++A S          +   DR      +++        ++   G +PN+
Sbjct: 243 VVAWSAIS--------AAYARNDRNRDAIRVLH--------RMDLEGLAPNS 278



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 75/174 (43%), Gaps = 35/174 (20%)

Query: 8   RQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMD-LNFYEPNTTFLHN 63
           R AI  L+     G A     +  ++  C  +  ++  +R+   +  L     +  ++  
Sbjct: 260 RDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLT 319

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L++ Y+K G L  A ++FDK+   D++ WN+L++ +A+ G  +                
Sbjct: 320 ALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTE---------------- 363

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
                          +AL++F RM+ +  +PT  T  S L AC+    L +G++
Sbjct: 364 ---------------KALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRK 402


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 374/663 (56%), Gaps = 38/663 (5%)

Query: 71  KSGKLFYARDLFDKMPLRD-IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           K GK+ +A  +      +D I+  N+L++ +A+   +   R LFD M  R+ VS+   +A
Sbjct: 42  KFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKRNVVSWGALMA 101

Query: 130 GFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           G+ + G   E L++F  M   D   P +Y   + +++C+    +  G Q HG  +   L 
Sbjct: 102 GYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLV 161

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            + +V+NAL  MY++  ++  A  ++  +   ++ S+N++I+G L+NG P + +++   M
Sbjct: 162 FHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRM 221

Query: 249 QLLGLNPDEVTVSNILGAC----------------FQTG-------------------RI 273
               +  D VT     G C                F+TG                    I
Sbjct: 222 VDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNI 281

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            +A ++F+ ++ K+ V WT ++  Y+QNG  E+AL  F EM  + + P++++ + +++SC
Sbjct: 282 LNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSC 341

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A +++L HG+++H +    G +D ++V +ALI+MY K G  + A  VF  M  R+ ++W+
Sbjct: 342 AGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWS 401

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G + +G   EAL ++ ++L     P   TFV VLSAC H    + G  + + +   
Sbjct: 402 AMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQ 461

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
            GI P ++HY C++ LL ++  +D+A + +KS P K + + W TLLS C +  +   G+ 
Sbjct: 462 TGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKK 521

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            A  + +++P + G YI+LSNMYA   RW+ V  IR  M+ +NVKK    SWIEI N +H
Sbjct: 522 VAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIH 581

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            FVSE +THPE+  IYE++ +L+  ++  G+ P+   V HD ++E+K + + YHSEKLA+
Sbjct: 582 VFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAI 641

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           AY L+K P G  PIR++KN+R+C DCH  +K  S +  R II+RD+NRFH F  G CSC 
Sbjct: 642 AYGLMKTPSG-APIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCA 700

Query: 694 DNW 696
           D W
Sbjct: 701 DYW 703


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/642 (34%), Positives = 358/642 (55%), Gaps = 41/642 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G V   R +FDKMP RD +S+N  I+G+   G   E L++F  M 
Sbjct: 241 DVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMI 300

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K   +P   T  S + AC  L D R G+QIHG ++    G +  + N+L  MY+  G I+
Sbjct: 301 KYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIE 360

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F R   R+LVSW  MISGY     P+K ++ ++ M+  G+ PDE+T++ +L AC 
Sbjct: 361 EAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACS 420

Query: 269 ----------------QTGR-------------------IDDAGRLFHVIKEKDNVCWTT 293
                           Q G                    ID A  +FH   EK+ V WT+
Sbjct: 421 CLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTS 480

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I+G   N +  +AL  F EM+   ++P+  ++  V+S+CA++ +L  G+ +H  A+  G
Sbjct: 481 IILGLRINNRCFEALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTG 539

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           V  D  + +A++DMY +CG  + AW  F  +    V SWN ++ GYA+ G+   A  L+ 
Sbjct: 540 VSFDGFMPNAILDMYVRCGRMEYAWKQFFSV-DHEVTSWNILLTGYAERGKGAHATELFQ 598

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++++ N+ P+  TF+S+L AC  + +   G  +F+S+   + I P+L HYAC+++LLGRS
Sbjct: 599 RMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRS 658

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A + I+ +P KP+  +W  LL+ C +   ++ GE+AA ++F+ +  + G YI+LS
Sbjct: 659 GKLEEAYEFIQKMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLS 718

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G+W+ VA +R  M+   +      SW+E+   VH F+S D  HP+ + I   L 
Sbjct: 719 NLYADNGKWDKVAEVRKMMRQNGLIVDPGCSWVEVKGTVHAFLSSDNFHPQIKEINALLE 778

Query: 594 KLIKKLQEAGF-SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
           +  KK++EAG   P +  +  D  E  K    C HSE+LA+ + LI    G+ PI + KN
Sbjct: 779 RFYKKMKEAGVEGPESSHM--DIMEASKADIFCGHSERLAIVFGLINSGPGM-PIWVTKN 835

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + +C  CH  +KF S  + R I +RD+ +FHHF GG CSC D
Sbjct: 836 LYMCQSCHNIVKFISREVRREISVRDAEQFHHFKGGICSCTD 877



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 158/517 (30%), Positives = 252/517 (48%), Gaps = 61/517 (11%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NALLS   R G++ D   +F +M  R+  S+N  + G+A  G   EAL ++ RM     +
Sbjct: 145 NALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVK 204

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT    L  C  + +L RG++IH  ++      +V V NAL  MY K G+++ AR +
Sbjct: 205 PDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLV 264

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD+M NR+ +SWN MISGY +NG   + + LF  M    ++PD +T+++++ AC      
Sbjct: 265 FDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDD 324

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G I++A  +F   + +D V WT MI GY
Sbjct: 325 RLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGY 384

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
                 + AL  +  M +E + PD+ +I+ V+S+C+ L +L  G  +H  A   G+    
Sbjct: 385 ENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYS 444

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V+++LIDMY KC   D A  +F+    +N+VSW S+I G   N +  EAL  + ++++ 
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR 504

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQN-HFDSIS---AVHGITPSLDHYACMINLLGRSS 474
            LKP+S T V VLSAC        G+  H  ++    +  G  P+      ++++  R  
Sbjct: 505 -LKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPN-----AILDMYVRCG 558

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE-LEPINAGP-YIML 532
            ++ A     S+ H+  S  W+ LL+  A +G   H    A  LF+ +   N  P  +  
Sbjct: 559 RMEYAWKQFFSVDHEVTS--WNILLTGYAERGKGAH----ATELFQRMVESNVSPNEVTF 612

Query: 533 SNMYAACGRWEDVA---SIRSSMKSK-----NVKKFA 561
            ++  AC R   VA      +SMK K     N+K +A
Sbjct: 613 ISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYA 649



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/492 (24%), Positives = 204/492 (41%), Gaps = 76/492 (15%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A+     M + R    D  +V+ +  C      + G +++  + +     ++ + NAL  
Sbjct: 90  AMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLS 149

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           M+ + G +  A ++F RM  RNL SWN+++ GY K G   + +DL+  M  +G+ PD  T
Sbjct: 150 MFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYT 209

Query: 260 VSNILGAC-----------------------------------FQTGRIDDAGRLFHVIK 284
              +L  C                                    + G ++ A  +F  + 
Sbjct: 210 FPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGDVNTARLVFDKMP 269

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +D + W  MI GY +NG   + L LF  M+   V PD  +++SV+++C  L     G+ 
Sbjct: 270 NRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQ 329

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  +      D  + ++LI MY   G+ ++A TVF+    R++VSW +MI+GY     
Sbjct: 330 IHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLM 389

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             +AL  Y  +  E + PD  T   VLSAC      + G N    ++   G+        
Sbjct: 390 PQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMN-LHEVAKQKGLVSYSIVAN 448

Query: 465 CMINLLGRSSDVDKAVDLIKSLPH---------------------------------KPN 491
            +I++  +   +DKA+++  S                                    KPN
Sbjct: 449 SLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRRLKPN 508

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG--PYIMLSNMYAACGR----WEDV 545
           S+    +LS CA  G +  G+    H         G  P  +L +MY  CGR    W+  
Sbjct: 509 SVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAIL-DMYVRCGRMEYAWKQF 567

Query: 546 ASIRSSMKSKNV 557
            S+   + S N+
Sbjct: 568 FSVDHEVTSWNI 579



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 156/346 (45%), Gaps = 37/346 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD    N+L+  ++  G +++   +F +   RD VS+   I+G+ N    ++AL+ +  M
Sbjct: 341 RDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYKMM 400

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +   P + T    L+AC+ L +L  G  +H       L     V N+L DMYAK   I
Sbjct: 401 EAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAKCKCI 460

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           DKA  +F     +N+VSW  +I G   N +  + +  F+EM +  L P+ VT+  +L AC
Sbjct: 461 DKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREM-IRRLKPNSVTLVCVLSAC 519

Query: 268 FQTGRID-----------------------------DAGRLFHVIKEKDNV-----CWTT 293
            + G +                                GR+ +  K+  +V      W  
Sbjct: 520 ARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFSVDHEVTSWNI 579

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
           ++ GY + GK   A  LF  M+  +V P++ +  S++ +C++   +  G +  +      
Sbjct: 580 LLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKYKY 639

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMIN 397
            +  +L   + ++D+  + G  ++A+     MP + +   W +++N
Sbjct: 640 SIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLN 685



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 31/179 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDI----ISWNALLSAHARSGSVQDLRALFDKMPI 118
           N LL  YA+ GK  +A +LF +M   ++    +++ ++L A +RSG V +    F+ M  
Sbjct: 578 NILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEGLEYFNSMKY 637

Query: 119 RDSV-----SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           + S+      Y   +      G   EA +    +QK   +P      + LN+C       
Sbjct: 638 KYSIMPNLKHYACVVDLLGRSGKLEEAYEF---IQKMPMKPDPAVWGALLNSC------- 687

Query: 174 RGKQIHGKIVVGNLGG-NVFVRNA--------LTDMYAKGGEIDKARWLFDRMNNRNLV 223
              +IH  + +G L   N+F  +         L+++YA  G+ DK   +   M    L+
Sbjct: 688 ---RIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLI 743


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/656 (35%), Positives = 362/656 (55%), Gaps = 49/656 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ--VFSR 146
           D+    ALL  + +   + D   +F  MP RD V++N  +AG+A+ G    A+   +  +
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN----------VFVRNA 196
           MQ  R  P   T V+ L   AQ   L +G  +H   +   L  N          V +  A
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 278

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-P 255
           L DMYAK G +  AR +FD M  RN V+W+ +I G++   +  +   LF+ M   GL   
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 256 DEVTVSNILGAC-----------------------------------FQTGRIDDAGRLF 280
              ++++ L AC                                    + G ID A  LF
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  KD V ++ ++ GY QNG+ E+A ++F +M + +V PD  ++ S++ +C+ LA+L 
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 458

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HG+  HG  ++ G+  +  + +ALIDMY KCG  D +  VFNMMP+R++VSWN+MI GY 
Sbjct: 459 HGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   EA AL+ ++      PD  TF+ +LSAC H+ L   G++ F  +   +G+TP +
Sbjct: 519 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 578

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HY CM++LL R   +D+A + I+S+P + +  +W  LL  C +  +I  G+  +R + E
Sbjct: 579 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
           L P   G +++LSN+Y+A GR+++ A +R   K +  KK    SWIEI+  +H FV  D+
Sbjct: 639 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQ 698

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK 640
           +HP++  IY EL  ++  +++ G+ P+T  VL D +EEEK K++  HSEKLA+AY ++  
Sbjct: 699 SHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSL 758

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               T I + KN+RVCGDCH  +K  S +  R II+RD+NRFHHF  G CSC D W
Sbjct: 759 SEDKT-IFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 212/457 (46%), Gaps = 52/457 (11%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA--LQVFSRMQKDRFEPTDY 157
           H  SG +     LFD++P  D  +YN  I  +++   +  A  L ++ RM + R  P +Y
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T   AL AC+ L D   G+ IH   +   L  ++FV  AL DMY K   +  A  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCID--LFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
             R+LV+WN M++GY  +G     +   L  +MQ+  L P+  T+  +L    Q G +  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 276 ---------------------------------------------AGRLFHVIKEKDNVC 290
                                                        A R+F  +  ++ V 
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           W+ +I G+    +   A +LF  ML++ +      SI+S + +CA L  L  G+ +H   
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
              GV  DL   ++L+ MY K G+ D A  +F+ M  ++ VS++++++GY QNG+  EA 
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            ++ K+   N++PD+ T VS++ AC H    + G+    S+  + G+         +I++
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLASETSICNALIDM 485

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
             +   +D +  +   +P + + + W+T+++   + G
Sbjct: 486 YAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 521



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 129/264 (48%), Gaps = 37/264 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  YAK+G +  A  LFD+M ++D +S++AL+S                        
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS------------------------ 414

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                  G+   G + EA  VF +MQ    EP   T VS + AC+ L  L+ G+  HG +
Sbjct: 415 -------GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           ++  L     + NAL DMYAK G ID +R +F+ M +R++VSWN MI+GY  +G  K+  
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEAT 527

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
            LF EM  LG  PD VT   +L AC  +G + +    FHV+     +      +  M+  
Sbjct: 528 ALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDL 587

Query: 298 YTQNGKEEDALILFNEM-LSEDVR 320
            ++ G  ++A      M L  DVR
Sbjct: 588 LSRGGFLDEAYEFIQSMPLRADVR 611



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 46/229 (20%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK G++  +R +F+ MP RDI+SWN                        
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN------------------------ 511

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                  T IAG+   G  +EA  +F  M    F P   T +  L+AC+    +  GK  
Sbjct: 512 -------TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-- 562

Query: 179 HGKIVVGNLGGNVFVRN----ALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISG-- 231
           H   V+G+ G  +  R      + D+ ++GG +D+A      M  R ++  W  ++    
Sbjct: 563 HWFHVMGH-GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACR 621

Query: 232 -YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
            Y      KK   + QE+   G   + V +SNI  A    GR D+A  +
Sbjct: 622 VYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSA---AGRFDEAAEV 666



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA--LALYDKLLQENLKPDSFTFVS 429
           G    A  +F+ +P+ +V ++N +I  Y+ +     A  L LY ++L+  + P+++TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 430 VLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            L AC   AD       H  +I A  G+   L     ++++  + + +  A  +  ++P 
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHA--GLQADLFVSTALLDMYVKCACLPDAAHIFATMPA 188

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           + + + W+ +L+  A  G   H   A  HL  ++
Sbjct: 189 R-DLVAWNAMLAGYAHHGMYHH---AVAHLLSMQ 218


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/622 (35%), Positives = 345/622 (55%), Gaps = 40/622 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LF      +   YNT I GF N     E L +F  ++K       +T    L AC +  +
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
            + G  +H  +V      +V    +L  +Y+  G ++ A  +F+ +  R++V+W  + SG
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---------------- 275
           Y   G+ ++ IDLF++M  +G+ PD   +  +L AC   G +D                 
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKN 246

Query: 276 -------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                              A  +F  + EKD V W+TMI GY  N   ++ +  F +ML 
Sbjct: 247 SFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQ 306

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKCGVT 374
           E+++PD+FSI   +SSCA L +L  G+   G +++   +   +L +++ALIDMY KCG  
Sbjct: 307 ENLKPDQFSIVGFLSSCASLGALDLGE--WGISLIDRHEFLTNLFMANALIDMYAKCGAM 364

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
              + VF  M  +++V  N+ I+G A+NG    + A++ +  +  + PD  TF+ +L  C
Sbjct: 365 ARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGC 424

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
           +HA L + G   F++IS V+ +  +++HY CM++L GR+  +D A  LI  +P +PN+++
Sbjct: 425 VHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIV 484

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LLS C +  D +  E   + L  LEP NAG Y+ LSN+Y+  GRW++ A +R  M  
Sbjct: 485 WGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNR 544

Query: 555 KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
           K +KK   YSWIE++  VH+F+++D++HP ++ IY +L  L  +++  GF P T+ V  D
Sbjct: 545 KGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFD 604

Query: 615 TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
            ++EEK + + +HSEKLA+A+ LI   HG   IR++KN+RVCGDCH  MK  S I  R I
Sbjct: 605 VEDEEKERVLGHHSEKLAVAFGLISTDHG-QVIRVVKNLRVCGDCHEVMKLISKITRREI 663

Query: 675 ILRDSNRFHHFVGGNCSCKDNW 696
           ++RD+NRFH F  G+CSC D W
Sbjct: 664 VVRDNNRFHCFTNGSCSCNDYW 685



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 161/347 (46%), Gaps = 37/347 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ +  +LLS ++ SG + D   +F+++P R  V++    +G+   G  REA+ +F +M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMV 204

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P  Y  V  L+AC  + DL  G+ I   +    +  N FVR  L ++YAK G+++
Sbjct: 205 EMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKME 264

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KAR +FD M  +++V+W+ MI GY  N  PK+ I+ F +M    L PD+ ++   L +C 
Sbjct: 265 KARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCA 324

Query: 269 QTGRID-----------------------------------DAGRLFHVIKEKDNVCWTT 293
             G +D                                       +F  +KEKD V    
Sbjct: 325 SLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNA 384

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
            I G  +NG  + +  +F +     + PD  +   ++  C     +  G +  +  + V 
Sbjct: 385 AISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVY 444

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            +   +     ++D++ + G+ DDA+ +   MP R N + W ++++G
Sbjct: 445 ALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSG 491



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 34/218 (15%)

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           T  ++ +F+     N+  +N++ING+  N    E L L+  + +  L    FTF  VL A
Sbjct: 61  THYSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA 120

Query: 434 C-----------LHADLFERGQNH----FDSISAVHGITPSLDHYACMINLLGRSSDVD- 477
           C           LH+ + + G NH      S+ +++  +  L+    +   +   S V  
Sbjct: 121 CTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTW 180

Query: 478 --------------KAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
                         +A+DL K +     +P+S     +LS C   GD+  GE   +H+ E
Sbjct: 181 TALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEE 240

Query: 521 LE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           +E   N+     L N+YA CG+ E   S+  SM  K++
Sbjct: 241 MEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDI 278


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 339/606 (55%), Gaps = 39/606 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL+A+ + G +QD   LFD +P RD V++ + +           AL +   +    F 
Sbjct: 42  NTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFH 101

Query: 154 PTDYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           P  +   S + ACA L  L +++GKQ+H +  +     +  V+++L DMYAK G  D  R
Sbjct: 102 PDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGR 161

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +FD +++ N +SW  MISGY +                                   +G
Sbjct: 162 AVFDSISSLNSISWTTMISGYAR-----------------------------------SG 186

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVV 330
           R  +A RLF     ++   WT +I G  Q+G   DA  LF EM  E +   D   +SSVV
Sbjct: 187 RKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVV 246

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            +CA LA    G+ +HG  + LG +  L +S+ALIDMY KC     A  +F  M  ++VV
Sbjct: 247 GACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVV 306

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW S+I G AQ+GQ  EALALYD+++   +KP+  TFV ++ AC HA L  +G+  F ++
Sbjct: 307 SWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTM 366

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              HGI+PSL HY C+++L  RS  +D+A +LI+++P  P+   W+ LLS C   G+ + 
Sbjct: 367 VEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQM 426

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
               A HL  L+P +   YI+LSN+YA  G WEDV+ +R  M +   KK   YS I++  
Sbjct: 427 AVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGK 486

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
             H F + + +HP  + I   + +L +++++ G++P+T  VLHD  ++EK + + +HSE+
Sbjct: 487 GSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSER 546

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY L+K   G T IRI+KN+RVCGDCH  +K  S I  R I +RD+ R+HHF  GNC
Sbjct: 547 LAVAYGLLKAVPG-TVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNC 605

Query: 691 SCKDNW 696
           SC D W
Sbjct: 606 SCNDFW 611



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 168/339 (49%), Gaps = 12/339 (3%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP--NTTFLH 62
           H+      +L S G       +  LV  C  +  + + +  Q H    F  P  +   + 
Sbjct: 86  HRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARF-FLSPFSDDDVVK 144

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + L+  YAK G   Y R +FD +   + ISW  ++S +ARSG   +   LF + P R+  
Sbjct: 145 SSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLF 204

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGK 181
           ++   I+G    G   +A  +F  M+ +    TD   +S+ + ACA L     GKQ+HG 
Sbjct: 205 AWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGV 264

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           ++       +F+ NAL DMYAK  ++  A+++F  M  +++VSW  +I G  ++GQ ++ 
Sbjct: 265 VITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEA 324

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIV 296
           + L+ EM L G+ P+EVT   ++ AC   G +     LF  + E   +      +T ++ 
Sbjct: 325 LALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLD 384

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
            ++++G  ++A  L   M    V PD+ + ++++SSC +
Sbjct: 385 LFSRSGHLDEAENLIRTM---PVNPDEPTWAALLSSCKR 420



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 138/301 (45%), Gaps = 53/301 (17%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GLN  E   + +L A  + G I DA +LF  +  +D V W +++     + +   AL + 
Sbjct: 33  GLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLSNRPHRALSIS 92

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLY--HGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
             +LS    PD F  +S+V +CA L  L+   G+ VH +  +    DD +V S+LIDMY 
Sbjct: 93  RSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYA 152

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--------- 420
           K G+ D    VF+ + + N +SW +MI+GYA++G+  EA  L+ +    NL         
Sbjct: 153 KFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISG 212

Query: 421 -----------------------KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
                                    D     SV+ AC +  L+E G+        +HG+ 
Sbjct: 213 LVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQ-------MHGVV 265

Query: 458 PSLDHYAC------MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
            +L + +C      +I++  + SD+  A  +   +  K + + W++++      G  +HG
Sbjct: 266 ITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRK-DVVSWTSIIV-----GTAQHG 319

Query: 512 E 512
           +
Sbjct: 320 Q 320



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 114/262 (43%), Gaps = 54/262 (20%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           S+ S + S A+ + L   + +H + +  G++    + + L++ Y KCG+  DA  +F+ +
Sbjct: 6   SLQSQLCSAARQSPLL-AKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDAL 64

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---------- 434
           P R+ V+W S++     + +   AL++   LL     PD F F S++ AC          
Sbjct: 65  PRRDPVAWASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQ 124

Query: 435 ---LHADLF------------------------ERGQNHFDSISAVHGITPSLDHYACMI 467
              +HA  F                        + G+  FDSIS+++ I+     +  MI
Sbjct: 125 GKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSIS-----WTTMI 179

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPI 524
           +   RS    +A  L +  P++ N   W+ L+S     G   D  H  +  RH    E I
Sbjct: 180 SGYARSGRKFEAFRLFRQTPYR-NLFAWTALISGLVQSGNGVDAFHLFVEMRH----EGI 234

Query: 525 NAGPYIMLSNMYAACGR---WE 543
           +    ++LS++  AC     WE
Sbjct: 235 SVTDPLVLSSVVGACANLALWE 256


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 366/626 (58%), Gaps = 33/626 (5%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           KSGK  +   +   M + D+    AL++ +A    V++ + +FD MP R+ V++N+  + 
Sbjct: 360 KSGKTIHGFAVKHGM-VEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           + N GF ++ L VF  M  +  +P   T +S L+AC+ L DL+ GK IHG  V   +  +
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           VFV NAL  +YAK   + +A+ +FD + +R + SWN +++ Y  N + +K + +F +M  
Sbjct: 479 VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQM-- 536

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
              N DEV                          + D + W+ +I G  +N + E+A+ +
Sbjct: 537 ---NRDEV--------------------------KADEITWSVVIGGCVKNSRIEEAMEI 567

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F +M +   +PD+ +I S++ +C+    L  G+ +H        D DL  ++AL+DMY K
Sbjct: 568 FRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAK 627

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG    +  VF+MMP ++V SWN+MI     +G   EAL+L++K+L   +KPDS TF  V
Sbjct: 628 CGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCV 687

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC H+ L E G   F+S+S  H + P  +HY C++++  R+  +++A   I+ +P +P
Sbjct: 688 LSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEP 747

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            ++ W   L+ C +  +++  +++A+ LFE++P  +  Y+ L N+      W + + IR 
Sbjct: 748 TAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRK 807

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            MK + + K    SW  + N+VH FV+ D+++ E++ IY  L +L  K++ AG+ P+T  
Sbjct: 808 LMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDY 867

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VLHD  +EEK +S+C HSEKLA+A+ ++   +G + IR+ KN+R+CGDCH  +K+ S+++
Sbjct: 868 VLHDIDQEEKAESLCNHSEKLAVAFGILNL-NGQSTIRVFKNLRICGDCHNAIKYMSNVV 926

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           G TI++RDS RFHHF  GNCSCKD W
Sbjct: 927 GVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/449 (29%), Positives = 238/449 (53%), Gaps = 37/449 (8%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NA + A+ +   V+  R +FD +  RD V++N+  A + N GF ++ L VF +
Sbjct: 72  MSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRK 131

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  ++ +    T  S L  C+ L DL+ GK+IHG +V   +  +VFV +A  + YAK   
Sbjct: 132 MGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLC 191

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + +A+ +FD M +R++V+WN + S Y+  G P+K +++F+EM L G+ PD VTVS IL A
Sbjct: 192 VREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSA 251

Query: 267 C-----FQTGR------------------------------IDDAGRLFHVIKEKDNVCW 291
           C      ++G+                              + +A  +F ++  ++ + W
Sbjct: 252 CSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITW 311

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            ++   Y   G  +  L +F EM    V+PD  ++SS++ +C++L  L  G+ +HG AV 
Sbjct: 312 NSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK 371

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+ +D+ V +AL+++Y  C    +A TVF++MP RNVV+WNS+ + Y   G   + L +
Sbjct: 372 HGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNV 431

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + +++   +KPD  T +S+L AC      + G+      +  HG+   +     +++L  
Sbjct: 432 FREMVLNGVKPDLVTMLSILHACSDLQDLKSGKV-IHGFAVRHGMVEDVFVCNALLSLYA 490

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           +   V +A  +   +PH+  +  W+ +L+
Sbjct: 491 KCVCVREAQVVFDLIPHREVA-SWNGILT 518



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 144/539 (26%), Positives = 264/539 (48%), Gaps = 91/539 (16%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           KSGK  +   +   M + D+   +A ++ +A+   V++ + +FD MP RD V++N+  + 
Sbjct: 158 KSGKEIHGFVVRHGM-VEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSC 216

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           + N GF ++ L VF  M  D  +P   T    L+AC+ L DL+ GK IHG  +   +  N
Sbjct: 217 YVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVEN 276

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           VFV NAL ++Y     + +A+ +FD M +RN+++WN + S Y+  G P+K +++F+EM L
Sbjct: 277 VFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGL 336

Query: 251 LGLNPDEVTVSNILGACFQT----------------GRIDD------------------- 275
            G+ PD + +S+IL AC Q                 G ++D                   
Sbjct: 337 NGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVRE 396

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  +F ++  ++ V W ++   Y   G  +  L +F EM+   V+PD  ++ S++ +C+ 
Sbjct: 397 AQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSD 456

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           L  L  G+V+HG AV  G+ +D+ V +AL+ +Y KC    +A  VF+++P R V SWN +
Sbjct: 457 LQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGI 516

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           +  Y  N +  + L ++ ++ ++ +K D  T+  V+  C+                    
Sbjct: 517 LTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCV-------------------- 556

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
                           ++S +++A+++   ++++  KP+     ++L  C++   ++ G+
Sbjct: 557 ----------------KNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGK 600

Query: 513 MAARHLF------ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
               ++F      +L   NA     L +MYA CG      ++   M  K+V     +SW
Sbjct: 601 EIHCYVFRHWKDWDLARTNA-----LVDMYAKCGGLSLSRNVFDMMPIKDV-----FSW 649



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 214/448 (47%), Gaps = 39/448 (8%)

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   EA+++++  +    +P     ++   ACA   D  + KQ H       +  +V + 
Sbjct: 19  GLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIG 78

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           NA    Y K   ++ AR +FD +  R++V+WN + + Y+  G P++ +++F++M L  + 
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVK 138

Query: 255 PDEVTVSNILGAC-----FQTGR------------------------------IDDAGRL 279
            + +TVS+IL  C      ++G+                              + +A  +
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F ++  +D V W ++   Y   G  +  L +F EM+ + V+PD  ++S ++S+C+ L  L
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +HG A+  G+ +++ VS+AL+++Y  C    +A  VF++MP RNV++WNS+ + Y
Sbjct: 259 KSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCY 318

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
              G   + L ++ ++    +KPD     S+L AC      + G+      +  HG+   
Sbjct: 319 VNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKT-IHGFAVKHGMVED 377

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           +     ++NL      V +A  +   +PH+ N + W++L S     G  + G    R + 
Sbjct: 378 VFVCTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVAS 547
            L  +      MLS ++ AC   +D+ S
Sbjct: 437 -LNGVKPDLVTMLSILH-ACSDLQDLKS 462



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 109/247 (44%), Gaps = 4/247 (1%)

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +G   +A+ ++    +  ++PDK    +V  +CA        +  H  A   GV  D+ +
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +A I  Y KC   + A  VF+ +  R+VV+WNS+   Y   G   + L ++ K+    +
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           K +  T  S+L  C      + G+         HG+   +   +  +N   +   V +A 
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGK-EIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            +   +PH+ + + W++L S     G  + G    R +  L+ +   P + +S + +AC 
Sbjct: 197 TVFDLMPHR-DVVTWNSLSSCYVNCGFPQKGLNVFREMV-LDGVKPDP-VTVSCILSACS 253

Query: 541 RWEDVAS 547
             +D+ S
Sbjct: 254 DLQDLKS 260



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 4/105 (3%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR--- 119
           N L+  YAK G L  +R++FD MP++D+ SWN ++ A+   G+ ++  +LF+KM +    
Sbjct: 619 NALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVK 678

Query: 120 -DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
            DS ++   ++  ++     E +Q+F+ M +D     +  H + +
Sbjct: 679 PDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCV 723


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/656 (35%), Positives = 362/656 (55%), Gaps = 49/656 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ--VFSR 146
           D+    ALL  + +   + D   +F  MP RD V++N  +AG+A+ G    A+   +  +
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN----------VFVRNA 196
           MQ  R  P   T V+ L   AQ   L +G  +H   +   L  N          V +  A
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-P 255
           L DMYAK G +  AR +FD M  RN V+W+ +I G++   +  +   LF+ M   GL   
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 256 DEVTVSNILGAC-----------------------------------FQTGRIDDAGRLF 280
              ++++ L AC                                    + G ID A  LF
Sbjct: 224 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 283

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  KD V ++ ++ GY QNG+ E+A ++F +M + +V PD  ++ S++ +C+ LA+L 
Sbjct: 284 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 343

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HG+  HG  ++ G+  +  + +ALIDMY KCG  D +  VFNMMP+R++VSWN+MI GY 
Sbjct: 344 HGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   EA AL+ ++      PD  TF+ +LSAC H+ L   G++ F  +   +G+TP +
Sbjct: 404 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 463

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HY CM++LL R   +D+A + I+S+P + +  +W  LL  C +  +I  G+  +R + E
Sbjct: 464 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
           L P   G +++LSN+Y+A GR+++ A +R   K +  KK    SWIEI+  +H FV  D+
Sbjct: 524 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQ 583

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK 640
           +HP++  IY EL  ++  +++ G+ P+T  VL D +EEEK K++  HSEKLA+AY ++  
Sbjct: 584 SHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSL 643

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               T I + KN+RVCGDCH  +K  S +  R II+RD+NRFHHF  G CSC D W
Sbjct: 644 SEDKT-IFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 50/408 (12%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M + R  P +YT   AL AC+ L D   G+ IH   +   L  ++FV  AL DMY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID--LFQEMQLLGLNPDEVTVSNIL 264
           +  A  +F  M  R+LV+WN M++GY  +G     +   L  +MQ+  L P+  T+  +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 265 GACFQTGRIDD---------------------------------------------AGRL 279
               Q G +                                               A R+
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLAS 338
           F  +  ++ V W+ +I G+    +   A +LF  ML++ +      SI+S + +CA L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H      GV  DL   ++L+ MY K G+ D A  +F+ M  ++ VS++++++G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           Y QNG+  EA  ++ K+   N++PD+ T VS++ AC H    + G+    S+  + G+  
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLAS 359

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
                  +I++  +   +D +  +   +P + + + W+T+++   + G
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 406



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 38/294 (12%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  ++ + + ++L + +  +    + T   N LL  YAK+G +  A  LFD+M ++D +S
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLT-AGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           ++AL+S                               G+   G + EA  VF +MQ    
Sbjct: 294 YSALVS-------------------------------GYVQNGRAEEAFLVFKKMQACNV 322

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           EP   T VS + AC+ L  L+ G+  HG +++  L     + NAL DMYAK G ID +R 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ M +R++VSWN MI+GY  +G  K+   LF EM  LG  PD VT   +L AC  +G 
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM-LSEDVR 320
           + +    FHV+     +      +  M+   ++ G  ++A      M L  DVR
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVR 496



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 149/361 (41%), Gaps = 63/361 (17%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL--I 309
           GL  D    + +L    +   + DA  +F  +  +D V W  M+ GY  +G    A+  +
Sbjct: 40  GLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHL 99

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----------GVDDDLL 359
           L  +M    +RP+  ++ +++   A+  +L  G  VH   +             + D +L
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL+DMY KCG    A  VF+ MP RN V+W+++I G+    +  +A  L+  +L + 
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219

Query: 420 ---LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              L P S    S L AC   D    G+    ++ A  G+   L     ++++  ++  +
Sbjct: 220 LCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 477 DKAVDLIKSLPHK----------------------------------PNSLIWSTLLSVC 502
           D+A+ L   +  K                                  P++    +L+  C
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 503 A-----MKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           +       G   HG +  R L  E    NA     L +MYA CGR +    + + M S++
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 557 V 557
           +
Sbjct: 392 I 392



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 46/229 (20%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK G++  +R +F+ MP RDI+SWN                        
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN------------------------ 396

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                  T IAG+   G  +EA  +F  M    F P   T +  L+AC+    +  GK  
Sbjct: 397 -------TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-- 447

Query: 179 HGKIVVGNLGGNVFVRN----ALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISG-- 231
           H   V+G+ G  +  R      + D+ ++GG +D+A      M  R ++  W  ++    
Sbjct: 448 HWFHVMGH-GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACR 506

Query: 232 -YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
            Y      KK   + QE+   G   + V +SNI  A    GR D+A  +
Sbjct: 507 VYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSA---AGRFDEAAEV 551


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/642 (35%), Positives = 369/642 (57%), Gaps = 43/642 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RF 152
           N+L+  +++ G + + RALFD    ++ VS+NT I G++ +G  R   ++   MQ++ + 
Sbjct: 338 NSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKV 397

Query: 153 EPTDYTHVSALNACA---QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
              + T ++ L AC+   QLL L   K+IHG         +  V NA    YAK   +D 
Sbjct: 398 RVNEVTVLNVLPACSGEHQLLSL---KEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDC 454

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A  +F  M  + + SWN +I  + +NG P K +DLF  M   G++PD  T+ ++L AC  
Sbjct: 455 AERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACAR 514

Query: 268 ---FQTGR------------IDD-----------------AGRL-FHVIKEKDNVCWTTM 294
               + G+            +D+                  G+L F  ++ K  VCW  M
Sbjct: 515 LKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVM 574

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G++QN    +AL  F +MLS  ++P + +++ V+ +C+++++L  G+ VH  A+   +
Sbjct: 575 ITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHL 634

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
            +D  V+ ALIDMY KCG  + +  +F+ +  ++   WN +I GY  +G  L+A+ L++ 
Sbjct: 635 SEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFEL 694

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  +  +PDSFTF+ VL AC HA L   G  +   +  ++G+ P L+HYAC++++LGR+ 
Sbjct: 695 MQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAG 754

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            + +A+ L+  +P +P+S IWS+LLS C   GD++ GE  ++ L ELEP  A  Y++LSN
Sbjct: 755 QLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSN 814

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA  G+W++V  +R  MK   + K A  SWIEI   V++F+  D +  E++ I +   K
Sbjct: 815 LYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIK 874

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L KK+ + G+ P+T  VLH+ +EE K+K +  HSEKLA+++ L+    G T +R+ KN+R
Sbjct: 875 LEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTT-LRVCKNLR 933

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +C DCH  +K  S ++ R II+RD+ RFHHF  G C+C D W
Sbjct: 934 ICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 183/396 (46%), Gaps = 40/396 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF-SRM 147
           D++    +++ ++  GS  D R +FD    +D   YN  ++G++     R+A+ +F   +
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                 P ++T      ACA + D+  G+ +H   +      + FV NAL  MY K G +
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL---GLNPDEVTVSNIL 264
           + A  +F+ M NRNLVSWN ++    +NG   +C  +F+ + +    GL PD  T+  ++
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 265 GACFQTGRI-----------------------------------DDAGRLFHVIKEKDNV 289
            AC   G +                                    +A  LF +   K+ V
Sbjct: 307 PACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVV 366

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
            W T+I GY++ G       L  EM  E+ VR ++ ++ +V+ +C+    L   + +HG 
Sbjct: 367 SWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGY 426

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           A   G   D LV++A +  Y KC   D A  VF  M  + V SWN++I  +AQNG   ++
Sbjct: 427 AFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKS 486

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           L L+  ++   + PD FT  S+L AC        G+
Sbjct: 487 LDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGK 522



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 185/388 (47%), Gaps = 40/388 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L+D +  NA ++A+A+  S+     +F  M  +   S+N  I   A  GF  ++L +F  
Sbjct: 433 LKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLV 492

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M     +P  +T  S L ACA+L  LR GK+IHG ++   L  + F+  +L  +Y +   
Sbjct: 493 MMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSS 552

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +   + +FD+M N++LV WN+MI+G+ +N  P + +D F++M   G+ P E+ V+ +LGA
Sbjct: 553 MLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGA 612

Query: 267 CFQT-----------------------------------GRIDDAGRLFHVIKEKDNVCW 291
           C Q                                    G ++ +  +F  + EKD   W
Sbjct: 613 CSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVW 672

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I GY  +G    A+ LF  M ++  RPD F+   V+ +C     +  G    G+   
Sbjct: 673 NVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQN 732

Query: 352 L-GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLE-A 408
           L GV   L   + ++DM  + G   +A  + N MP   +   W+S+++   +N  DLE  
Sbjct: 733 LYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSS-CRNYGDLEIG 791

Query: 409 LALYDKLLQ-ENLKPDSFTFVSVLSACL 435
             +  KLL+ E  K +++  +S L A L
Sbjct: 792 EEVSKKLLELEPNKAENYVLLSNLYAGL 819



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 157/315 (49%), Gaps = 14/315 (4%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           + S MD + +   +  L    L F  + GK  +   L + + L + I   +L+S + +  
Sbjct: 494 MDSGMDPDRFTIGSLLLACARLKFL-RCGKEIHGFMLRNGLELDEFIGI-SLMSLYIQCS 551

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           S+   + +FDKM  +  V +N  I GF+      EAL  F +M     +P +      L 
Sbjct: 552 SMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLG 611

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           AC+Q+  LR GK++H   +  +L  + FV  AL DMYAK G +++++ +FDR+N ++   
Sbjct: 612 ACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR------ 278
           WN++I+GY  +G   K I+LF+ MQ  G  PD  T   +L AC   G + +  +      
Sbjct: 672 WNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQ 731

Query: 279 -LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            L+ V  + ++      ++G  + G+  +AL L NEM  E   PD    SS++SSC    
Sbjct: 732 NLYGVKPKLEHYACVVDMLG--RAGQLTEALKLVNEMPDE---PDSGIWSSLLSSCRNYG 786

Query: 338 SLYHGQVVHGKAVVL 352
            L  G+ V  K + L
Sbjct: 787 DLEIGEEVSKKLLEL 801



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 160/334 (47%), Gaps = 48/334 (14%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           L AC    ++  G+++H  +   + L  +V +   +  MY+  G    +R +FD    ++
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQE-MQLLGLNPDEVTVSNILGACF------------ 268
           L  +N ++SGY +N   +  I LF E +    L PD  T+  +  AC             
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 269 -----------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  + G ++ A ++F  ++ ++ V W +++   ++NG   
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 306 DALILFNEML---SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           +   +F  +L    E + PD  ++ +V+ +CA +  +  G VVHG A  LG+ +++ V++
Sbjct: 279 ECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNN 338

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-QENLK 421
           +L+DMY KCG   +A  +F+M   +NVVSWN++I GY++ G       L  ++  +E ++
Sbjct: 339 SLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVR 398

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
            +  T ++VL AC        G++   S+  +HG
Sbjct: 399 VNEVTVLNVLPAC-------SGEHQLLSLKEIHG 425



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 13/273 (4%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L  D V  + I+      G   D+  +F   KEKD   +  ++ GY++N    DA+ LF 
Sbjct: 124 LRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFL 183

Query: 313 EMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           E+LS  D+ PD F++  V  +CA +A +  G+ VH  A+  G   D  V +ALI MY KC
Sbjct: 184 ELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKC 243

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL---QENLKPDSFTFV 428
           G  + A  VF  M  RN+VSWNS++   ++NG   E   ++ +LL   +E L PD  T V
Sbjct: 244 GFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMV 303

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           +V+ AC        G      ++   GIT  +     ++++  +   + +A  L   +  
Sbjct: 304 TVIPACAAVGEVRMGMV-VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF-DMNG 361

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
             N + W+T++   + +GD        R +FEL
Sbjct: 362 GKNVVSWNTIIWGYSKEGDF-------RGVFEL 387



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 54/290 (18%)

Query: 9   QAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +A+DT   + S G    E A T ++  C++V+ + L K + S   L  +     F+   L
Sbjct: 586 EALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHS-FALKAHLSEDAFVTCAL 644

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  YAK G +  ++++FD++  +D   WN +                             
Sbjct: 645 IDMYAKCGCMEQSQNIFDRVNEKDEAVWNVI----------------------------- 675

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             IAG+   G   +A+++F  MQ     P  +T +  L AC     +  G +  G++   
Sbjct: 676 --IAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQM--Q 731

Query: 186 NLGG---NVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKC 241
           NL G    +     + DM  + G++ +A  L + M +  +   W+ ++S     G     
Sbjct: 732 NLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGD---- 787

Query: 242 IDLFQEM--QLLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKE 285
           +++ +E+  +LL L P++    V +SN+       G+ D+  ++   +KE
Sbjct: 788 LEIGEEVSKKLLELEPNKAENYVLLSNLYAG---LGKWDEVRKVRQRMKE 834


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/695 (35%), Positives = 371/695 (53%), Gaps = 72/695 (10%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L + + +H+      P  +FL N L++ Y+K      A+ +      R +++W +L+S  
Sbjct: 25  LGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLIS-- 82

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
              G V                          N+ F+  AL  FS M+++   P D+T  
Sbjct: 83  ---GCVH-------------------------NRRFT-SALLHFSNMRRECVLPNDFTFP 113

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
               A A L     GKQ+H   + G    +VFV  +  DMY+K G   +AR +FD M +R
Sbjct: 114 CVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHR 173

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--- 272
           NL +WN  +S  +++G+    I  F++   +   P+ +T    L AC      + GR   
Sbjct: 174 NLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLH 233

Query: 273 ------------------IDDAGRLFHVIK-----------EKDNVCWTTMIVGYTQNGK 303
                             ID  G+   ++             ++ V W +++    QN +
Sbjct: 234 GFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHE 293

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           EE A ++F +   E V P  F ISSV+S+CA+L  L  G+ VH  A+   V++++ V SA
Sbjct: 294 EERACMVFLQARKE-VEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSA 352

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--LK 421
           L+D+Y KCG  + A  VF  MP RN+V+WN+MI GYA  G    AL+L+ ++   +  + 
Sbjct: 353 LVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIA 412

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
               T VSVLSAC  A   ERG   F+S+   +GI P  +HYAC+++LLGRS  VD+A +
Sbjct: 413 LSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYE 472

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
            IK +P  P   +W  LL  C M G  K G++AA  LFEL+P ++G +++ SNM A+ GR
Sbjct: 473 FIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGR 532

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           WE+   +R  M+   +KK   YSW+ + N+VH F ++D  H +   I   L+KL  ++++
Sbjct: 533 WEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKK 592

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           AG+ P+  L L D +EEEK   + YHSEK+ALA+ LI  P GV PIRI KN+R+C DCH 
Sbjct: 593 AGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGV-PIRITKNLRICIDCHS 651

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +KF S I+GR II+RD+NRFH F  G CSCKD W
Sbjct: 652 AIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW 686



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 113/262 (43%), Gaps = 43/262 (16%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T+   + ++  C  +  +EL + + + + L        F+ + L+  Y K G + YA  +
Sbjct: 311 TDFMISSVLSACAELGGLELGRSVHA-LALKACVEENIFVGSALVDLYGKCGSIEYAEQV 369

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F +MP R++++WNA++  +A  G V    +LF +M    S S   A+             
Sbjct: 370 FREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEM---TSGSCGIAL------------- 413

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTD 199
                        +  T VS L+AC++   + RG QI  + + G  G      +   + D
Sbjct: 414 -------------SYVTLVSVLSACSRAGAVERGLQIF-ESMRGRYGIEPGAEHYACVVD 459

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE- 257
           +  + G +D+A     RM     +S W  ++     +G+ K  +      +L  L+PD+ 
Sbjct: 460 LLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTK--LGKIAAEKLFELDPDDS 517

Query: 258 ---VTVSNILGACFQTGRIDDA 276
              V  SN+L +    GR ++A
Sbjct: 518 GNHVVFSNMLAS---AGRWEEA 536



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 8/122 (6%)

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS---SALIDMYCKCGVTDD 376
           RP     S + S+    +SL  G+ VH  A +L   D  L S   + L++MY K  + + 
Sbjct: 5   RPPNLLGSFLESAVLSRSSLL-GRAVH--AHILRTHDTPLPSFLCNHLVNMYSKLDLPNS 61

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL--SAC 434
           A  V ++   R VV+W S+I+G   N +   AL  +  + +E + P+ FTF  V   SA 
Sbjct: 62  AQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASAS 121

Query: 435 LH 436
           LH
Sbjct: 122 LH 123


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/645 (35%), Positives = 365/645 (56%), Gaps = 38/645 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    + +  ++R G V     LFD M IRD  ++N  I+GF   G   EAL+VF  M+
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                    T  S L  C QL D+  G  IH   +   L  ++FV NAL +MYAK GE+ 
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV-------- 260
            A  +F++M  R++VSWN +++ + +N +P   + ++ +M  +G+ PD +T+        
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 261 --SNILGA----------CF----------------QTGRIDDAGRLFHVIKEKDNVCWT 292
              N L +          C+                + G ID A ++F  +  KD + W 
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 293 TMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           ++I GY+QNG   +A+ +++ M       P++ +  S++++ ++L +L  G   HG+ + 
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ VS+ L+DMY KCG   DA ++F  +P ++ VSWN++I+ +  +G  L+A+ L
Sbjct: 473 NFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKL 532

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++  E +KPD  TFVS+LSAC H+ L + GQ  F  +   +GI PSL HY CM++L G
Sbjct: 533 FKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFG 592

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++KA + +K++P +P+  +W  LL  C +  +++     + HL ++E  N G Y++
Sbjct: 593 RAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVL 652

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G WE V  +RS  + + +KK   +S IE+D K+  F + ++THP+ E IY E
Sbjct: 653 LSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSE 712

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   VL D +++EK   +  HSE+LA+A+ +I  P   T ++I K
Sbjct: 713 LRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTT-LQIFK 771

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   KF S I  R II+RDSNRFHHF  G CSC D W
Sbjct: 772 NLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/589 (25%), Positives = 275/589 (46%), Gaps = 107/589 (18%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E  + ++ L CT+V+   LAK+L + + ++  +  + FL  +L++ YA  G + +AR  F
Sbjct: 43  EIDFNRIFLYCTKVH---LAKQLHALLVVS-GKTQSIFLSAKLINRYAFLGDIPHARLTF 98

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D++  +D+ +WN+++SA+AR G                                   A+ 
Sbjct: 99  DQIQTKDVYTWNSMISAYARIGHFH-------------------------------AAVD 127

Query: 143 VFSRMQKDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            F+      F  +D YT    + AC  L D   G+++H  ++      +V++  +    Y
Sbjct: 128 CFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYIAASFIHFY 184

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           ++ G +  A  LFD M  R++ +WN MISG+  NG+  + +++F EM+   ++ D VT+S
Sbjct: 185 SRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTIS 244

Query: 262 NILGACFQT-----------------------------------GRIDDAGRLFHVIKEK 286
           ++L  C Q                                    G +  A  +F+ +K +
Sbjct: 245 SLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVR 304

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W +++  + QN K   AL ++N+M S  V PD  ++ S+ S  A+L +    + +H
Sbjct: 305 DIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIH 364

Query: 347 GKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           G          D+ + +A+IDMY K G  D A  VF  +P ++V+SWNS+I GY+QNG  
Sbjct: 365 GFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLA 424

Query: 406 LEALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG-ITPSLDHY 463
            EA+ +Y  +       P+  T+VS+L+A       ++G          HG +  +  ++
Sbjct: 425 NEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMK-------AHGQLIKNFLYF 477

Query: 464 -----ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
                 C++++ G+   +  A+ L   +PH+ +S+ W+ ++S   + G   +G  A +  
Sbjct: 478 DIFVSTCLVDMYGKCGKLADALSLFYEVPHQ-SSVSWNAIISCHGLHG---YGLKAVKLF 533

Query: 519 FELEPINAGP-YIMLSNMYAAC--------GRW-----EDVASIRSSMK 553
            E++     P +I   ++ +AC        G+W     ++   IR S+K
Sbjct: 534 KEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLK 582



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/253 (31%), Positives = 140/253 (55%), Gaps = 9/253 (3%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L DI   NA++  +A+ G +   R +F+ +P++D +S+N+ I G++  G + EA+ V+S 
Sbjct: 374 LHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSS 433

Query: 147 MQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           M+      P   T VS L A +QL  L++G + HG+++   L  ++FV   L DMY K G
Sbjct: 434 MRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCG 493

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           ++  A  LF  + +++ VSWN +IS +  +G   K + LF+EMQ  G+ PD +T  ++L 
Sbjct: 494 KLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLS 553

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           AC  +G +D+    F +++E   +      +  M+  + + G  E A   FN + +  VR
Sbjct: 554 ACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKA---FNFVKNMPVR 610

Query: 321 PDKFSISSVVSSC 333
           PD     +++ +C
Sbjct: 611 PDVSVWGALLGAC 623


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/643 (36%), Positives = 363/643 (56%), Gaps = 41/643 (6%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           +S + L+ A  + G +   R LFD MP R  V++N+ IA +     S+EA++++  M  +
Sbjct: 82  LSGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISN 141

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
              P +YT  S   A + L   +  ++ HG  +++G    NVFV +AL DMY K G+  +
Sbjct: 142 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 201

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A+ + DR+  +++V    +I GY + G+  + +  FQ M +  + P+E T +++L +C  
Sbjct: 202 AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGN 261

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             +   +DD+  +F  IK  + V WT++
Sbjct: 262 LKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSL 321

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G  QNG+EE ALI F +M+ + V+P+ F++SS +  C+ LA    G+ VHG     G 
Sbjct: 322 ISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGF 381

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D D    S LI++Y KCG +D A  VF+ +   +V+S N+MI  YAQNG   EAL L+++
Sbjct: 382 DRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFER 441

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++   L+P+  T +SVL AC ++ L E G   FDS      I  + DHYACM+++LGR+ 
Sbjct: 442 MINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRK-DKIMLTNDHYACMVDMLGRAG 500

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A  LI  + + P+ ++W TLLS C +   ++  E   R + E+ P + G  I+LSN
Sbjct: 501 RLEEAEMLITEVTN-PDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSN 559

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR-THPETEIIYEELS 593
           +YA+ G+W+ V  ++S MK   +KK  A SW+EID + H F++ D  +HP +E I E L 
Sbjct: 560 LYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQILENLE 619

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +LIKK ++ G+  +   V  D +E  K +S+  HSEKLA+A+ + +   G   IRI+KN+
Sbjct: 620 ELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG--SIRILKNL 677

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH ++K  S II R II RDS RFHHF  G+CSC D W
Sbjct: 678 RVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGDYW 720


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 359/652 (55%), Gaps = 73/652 (11%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  +   +N+ I    + G   EAL ++S  Q+ R +P  YT  S +NACA LLD    K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            IH +++    G ++++ NAL DMY +  ++DKAR +F+ M  R++VSWN +ISGY  NG
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 237 QPKKCIDLF-QEMQLL-----GLNPDEVTVSNILGACFQTGRID---------------- 274
              + ++++ Q ++L         PD +T+++IL AC   G ++                
Sbjct: 196 YWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYEC 255

Query: 275 -------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF---- 311
                               +  +F  +K KD+V W +MI  Y QNGK  D+L +F    
Sbjct: 256 DTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENMK 315

Query: 312 ---------------------------NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
                                      + M +E V PD  ++ S++  C+ LA+   G+ 
Sbjct: 316 ARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKE 375

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG    LG++ D+ V + LI+MY KCG   +++ VF +M T++VV+W ++I+     G+
Sbjct: 376 IHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGE 435

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             +A+  + ++    + PD   FV+++ AC H+ L E G N+F  +   + I P ++HYA
Sbjct: 436 GKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYA 495

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           C+++LL RS+ +DKA D I S+P KP+S IW  LLS C M GD +  E  +  + EL P 
Sbjct: 496 CVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPD 555

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           + G Y+++SN+YAA G+W+ V SIR S+K++ +KK    SW+EI NKV+ F +  +   +
Sbjct: 556 DTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFFEQ 615

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            E + + L  L   + + G+  N + VLHD  E+EK   +C HSE+LA+A+ L+    G 
Sbjct: 616 FEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPG- 674

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           TP+++MKN+RVC DCH   K+ S I+ R +++RD+NRFH F  G CSC D W
Sbjct: 675 TPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 169/338 (50%), Gaps = 15/338 (4%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T ++  C  + D+E  K +  +M  + YE +TT   N L++ YAK G L  ++++F  M 
Sbjct: 226 TSILQACGHLGDLEFGKYVHDYMITSGYECDTT-ASNILINMYAKCGNLLASQEVFSGMK 284

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            +D +SWN++++ + ++G + D   +F+ M  RD +++NT IA   +       L++ SR
Sbjct: 285 CKDSVSWNSMINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISR 344

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+ +   P   T +S L  C+ L   R+GK+IHG I    L  +V V N L +MY+K G 
Sbjct: 345 MRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGS 404

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  +  +F  M  +++V+W  +IS     G+ KK +  F EM+  G+ PD V    I+ A
Sbjct: 405 LRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFA 464

Query: 267 CFQTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSED 318
           C  +G +++    FH +K+   +        C   ++       K ED +      LS  
Sbjct: 465 CSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFI------LSMP 518

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           ++PD     +++S+C         + V  + + L  DD
Sbjct: 519 LKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDD 556



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 15/273 (5%)

Query: 279 LFHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           +F +    +NV  W ++I   T NG   +AL L++E     ++PD ++  SV+++CA L 
Sbjct: 70  VFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
                + +H + + +G   DL + +ALIDMYC+    D A  VF  MP R+VVSWNS+I+
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLIS 189

Query: 398 GYAQNGQDLEALALY---DKLLQE---NLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           GY  NG   EAL +Y    KL  E     KPD  T  S+L AC H    E G+   D + 
Sbjct: 190 GYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYM- 248

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
              G          +IN+  +  ++  + ++   +  K +S+ W+++++V      I++G
Sbjct: 249 ITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK-DSVSWNSMINVY-----IQNG 302

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
           +M    L   E + A   I  + + A+C   ED
Sbjct: 303 KM-GDSLKVFENMKARDIITWNTIIASCVHSED 334



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 120/277 (43%), Gaps = 52/277 (18%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           SIS  ++S A    L+    +H   + LG+   ++ S+ LI  Y        +++VF + 
Sbjct: 18  SISRALASAATTTQLHK---LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLA 74

Query: 385 -PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            P+ NV  WNS+I     NG   EAL+LY +  +  L+PD++TF SV++AC     FE  
Sbjct: 75  SPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 134

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP---------------- 487
           ++  D +  + G    L     +I++  R +D+DKA  + + +P                
Sbjct: 135 KSIHDRVLDM-GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNA 193

Query: 488 ------------------------HKPNSLIWSTLLSVCAMKGDIKHGEMAARHL----F 519
                                    KP+ L  +++L  C   GD++ G+    ++    +
Sbjct: 194 NGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGY 253

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           E +   +    +L NMYA CG       + S MK K+
Sbjct: 254 ECDTTASN---ILINMYAKCGNLLASQEVFSGMKCKD 287


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 341/577 (59%), Gaps = 13/577 (2%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N+ I G+++ G  REA+ ++ RM      P  YT    L+ C ++     G Q+HG +V 
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +VF++N L   YA+ G +D    +F+ M+ RN+VSW  +I GY +  +PK+ + L
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F EM       ++V V+ ++    + G ID A RLF    +++ V + T++  Y + G  
Sbjct: 220 FFEML------NKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLA 273

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-----GVDDDLL 359
            +AL + +EML +  RPD+ ++ S +S+ A+L  L++G+V HG  V       G+  D+ 
Sbjct: 274 REALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMR 333

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           +++AL+DM+ +CG    A  VFN M  R+V +W + I   A  G    A  L++++L + 
Sbjct: 334 LNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQG 393

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +KPD   FV VL+AC H    E+G  H  S+   HGI+P ++HY CM++LLGR+  + +A
Sbjct: 394 VKPDVVLFVQVLTACSHGGQVEQGL-HIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREA 452

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            DLIKS+P +PN ++W +LL+ C +  +++    AA  + EL P  AG +++LSN+YA+ 
Sbjct: 453 FDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASA 512

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           G+W DVA +R +++ K V+K    S ++++  +H+F S D +HPE   I   L ++  + 
Sbjct: 513 GKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRF 572

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
            +AG  P+   VL D  E+EK   +  HSEKLA+A+ LI     + PIR++KN+R+C DC
Sbjct: 573 SDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSM-PIRVVKNLRMCSDC 631

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H F K AS I  R II+RD+NRFH F  G CSC D W
Sbjct: 632 HSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 34/261 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS--------------- 103
            F+ N L+HFYA+ G + +   +F+ M  R+++SW +L+  +AR                
Sbjct: 166 VFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLN 225

Query: 104 --------------GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
                         G++   + LFD+   R+ V YNT ++ +A +G +REAL +   M +
Sbjct: 226 KVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQ 285

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-----VFVRNALTDMYAKG 204
               P   T +SA++A AQL+DL  GK  HG  V   +  N     + +  AL DM+A+ 
Sbjct: 286 QGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARC 345

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G+   A  +F++M  R++ +W   I      G  +    LF +M + G+ PD V    +L
Sbjct: 346 GDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVL 405

Query: 265 GACFQTGRIDDAGRLFHVIKE 285
            AC   G+++    +F ++++
Sbjct: 406 TACSHGGQVEQGLHIFSLMED 426



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 141/355 (39%), Gaps = 83/355 (23%)

Query: 84  KMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           KM L  D+   N L+  +A  G +     +F+ M  R+ VS+ + I G+A     +EA+ 
Sbjct: 159 KMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVS 218

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F  M               LN                K++V          NAL DMY 
Sbjct: 219 LFFEM---------------LN----------------KVMV----------NALVDMYM 237

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G ID A+ LFD   +RNLV +N ++S Y + G  ++ + +  EM   G  PD VT+ +
Sbjct: 238 KCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLS 297

Query: 263 ILGACFQ----------------------------------------TGRIDDAGRLFHV 282
            + A  Q                                         G    A ++F+ 
Sbjct: 298 AISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNK 357

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + E+D   WT  I      G  E A  LFN+ML + V+PD      V+++C+    +  G
Sbjct: 358 MTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG 417

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMI 396
             +       G+   +     ++D+  + G+  +A+ +   MP   N V W S++
Sbjct: 418 LHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 472


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 369/664 (55%), Gaps = 75/664 (11%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G V + + LFD    +D VS+NT I+  +      EAL     M +    
Sbjct: 225 NALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVR 284

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARW 212
           P   T  S L AC+ L  L  GK+IH  +++ N L  N FV  AL DMY    + +K R 
Sbjct: 285 PNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRL 344

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQ-- 269
           +FD M  R +  WN MI+GY++N    + I+LF EM   LGL+P+ VT+S++L AC +  
Sbjct: 345 VFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCE 404

Query: 270 ---------------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                             GRI+ A  +F  +  KD V W TMI 
Sbjct: 405 SFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMIT 464

Query: 297 GYTQNGKEEDALILFNEMLS-------------ED-----VRPDKFSISSVVSSCAKLAS 338
           GY   G+ +DAL L ++M               ED     ++P+  ++ +V+  CA LA+
Sbjct: 465 GYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAA 524

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H  AV   +  D+ V SAL+DMY KCG  + + TVF  M  RNV++WN +I  
Sbjct: 525 LGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMA 584

Query: 399 YAQNGQDLEALALYDKLLQEN-----LKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           Y  +G+  EAL L+ ++++E      ++P+  T++++ ++  H+ + + G N F ++ A 
Sbjct: 585 YGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAK 644

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGE 512
           HGI P+ DHYAC+++LLGRS  +++A +LIK++P     +  WS+LL  C +  +++ GE
Sbjct: 645 HGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGE 704

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
           +AA++LF L+P N   Y    +M    GR          MK K V+K    SWIE  ++V
Sbjct: 705 IAAKNLFVLDP-NVLDYGTKQSML---GR---------KMKEKGVRKEPGCSWIEHGDEV 751

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           HKF++ D +HP+++ ++E L  L  ++++ G+ P+T  VLH+  EEEK   +C HSE+LA
Sbjct: 752 HKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLA 811

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +A+ L+    G T IR+ KN+RVC DCH+  KF S I+ R IILRD  RFHHF  G CSC
Sbjct: 812 IAFGLLNTSPGTT-IRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSC 870

Query: 693 KDNW 696
            D W
Sbjct: 871 GDYW 874



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 172/342 (50%), Gaps = 43/342 (12%)

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           +A+  ++ M      P ++   + L A A + DL  GKQ+H  +          V N+L 
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +MY K G+ID AR +FD + NR+ VSWN MI+   +  + +  + LF+ M L  + P   
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 259 TVSNILGAC-----------------------------------FQTGRIDDAGRLFHVI 283
           T+ ++  AC                                    + GR+ +A  LF V 
Sbjct: 188 TLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVF 247

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            +KD V W T+I   +QN + E+AL+  + ML   VRP+  +++SV+ +C+ L  L  G+
Sbjct: 248 DDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGK 307

Query: 344 VVHGKAVVLGVDDDLL----VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
            +H  A VL +++DL+    V  AL+DMYC C   +    VF+ M  R +  WN+MI GY
Sbjct: 308 EIH--AFVL-MNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGY 364

Query: 400 AQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLHADLF 440
            +N  D EA+ L+ +++ E  L P+S T  SVL AC+  + F
Sbjct: 365 VRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESF 406



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 151/306 (49%), Gaps = 31/306 (10%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++ N L+  Y++ G++  AR +F  M  +DI+SWN +++ +   G   D   L   M   
Sbjct: 426 YVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDM--- 482

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDR---FEPTDYTHVSALNACAQLLDLRRGK 176
                         +G +   +  F   + ++    +P   T ++ L  CA L  L +GK
Sbjct: 483 -------------QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGK 529

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH   V   L  +V V +AL DMYAK G ++ +R +F++M+ RN+++WN++I  Y  +G
Sbjct: 530 EIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHG 589

Query: 237 QPKKCIDLFQEMQLLGLN-----PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           + ++ + LF+ M   G N     P+EVT   I  +   +G +D+   LF+ +K K  +  
Sbjct: 590 KGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEP 649

Query: 292 TT-----MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           T+     ++    ++G+ E+A  L   M S   + D +  SS++ +C    +L  G++  
Sbjct: 650 TSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAW--SSLLGACKIHQNLEIGEIAA 707

Query: 347 GKAVVL 352
               VL
Sbjct: 708 KNLFVL 713



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 174/403 (43%), Gaps = 75/403 (18%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A  L +   + +     AL+  +      +  R +FD M  R    +N  IAG+ 
Sbjct: 306 GKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYV 365

Query: 133 NKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
              F  EA+++F  M  +    P   T  S L AC +       + IH  +V      + 
Sbjct: 366 RNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDK 425

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL- 250
           +V+NAL DMY++ G I+ AR +F  MN +++VSWN MI+GY+  G+    ++L  +MQ  
Sbjct: 426 YVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRG 485

Query: 251 -----------------LGLNPDEVTVSNILGAC-------------------------- 267
                              L P+ VT+  +L  C                          
Sbjct: 486 QAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVA 545

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE- 317
                     + G ++ +  +F  +  ++ + W  +I+ Y  +GK E+AL LF  M+ E 
Sbjct: 546 VGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEG 605

Query: 318 ----DVRPDKFSISSVVSSCAKLASLYH-GQVVHGKAVVL------GVDDDLLVSSALID 366
               ++RP++      V+  A  ASL H G V  G  +        G++      + L+D
Sbjct: 606 DNNREIRPNE------VTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVD 659

Query: 367 MYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLE 407
           +  + G  ++A+ +   MP+  + V +W+S++ G  +  Q+LE
Sbjct: 660 LLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLL-GACKIHQNLE 701



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 105/187 (56%), Gaps = 5/187 (2%)

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           ++ N+ G C   G ID A R+F  I  +D+V W +MI    +  + E A+ LF  ML E+
Sbjct: 125 SLVNMYGKC---GDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLEN 181

Query: 319 VRPDKFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           V P  F++ SV  +C+ L + L  G+ VH   +  G D     ++AL+ MY K G   +A
Sbjct: 182 VGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEA 240

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
            T+F++   +++VSWN++I+  +QN +  EAL     +LQ  ++P+  T  SVL AC H 
Sbjct: 241 KTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHL 300

Query: 438 DLFERGQ 444
           ++   G+
Sbjct: 301 EMLGCGK 307



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 76/145 (52%), Gaps = 1/145 (0%)

Query: 291 WTTMIVGYTQNGKE-EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           W + +   TQ+      A+  +  M++  V PD F+  +V+ + A +  L  G+ +H   
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
              G      V ++L++MY KCG  D A  VF+ +  R+ VSWNSMIN   +  +   A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
            L+  +L EN+ P SFT VSV  AC
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHAC 196


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/656 (35%), Positives = 362/656 (55%), Gaps = 49/656 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ--VFSR 146
           D+    ALL  + +   + D   +F  MP RD V++N  +AG+A+ G    A+   +  +
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 218

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN----------VFVRNA 196
           MQ  R  P   T V+ L   AQ   L +G  +H   +   L  N          V +  A
Sbjct: 219 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTA 278

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-P 255
           L DMYAK G +  AR +FD M  RN V+W+ +I G++   +  +   LF+ M   GL   
Sbjct: 279 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 338

Query: 256 DEVTVSNILGAC-----------------------------------FQTGRIDDAGRLF 280
              ++++ L AC                                    + G ID A  LF
Sbjct: 339 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 398

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  KD V ++ ++ GY QNG+ E+A ++F +M + +V PD  ++ S++ +C+ LA+L 
Sbjct: 399 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 458

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HG+  HG  ++ G+  +  + +ALIDMY KCG  D +  VFNMMP+R++VSWN+MI GY 
Sbjct: 459 HGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 518

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   EA AL+ ++      PD  TF+ +LSAC H+ L   G++ F  +   +G+TP +
Sbjct: 519 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRM 578

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HY CM++LL R   +D+A + I+S+P + +  +W  LL  C +  +I  G+  +R + E
Sbjct: 579 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 638

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
           L P   G +++LSN+Y+A GR+++ A +R   K +  KK    SWIEI+  +H FV  D+
Sbjct: 639 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQ 698

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK 640
           +HP++  IY EL  ++  +++ G+ P+T  VL D +EEEK K++  HSEKLA+AY ++  
Sbjct: 699 SHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSL 758

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               T I + KN+RVCGDCH  +K  S +  R II+RD+NRFHHF  G CSC D W
Sbjct: 759 SEDKT-IFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 130/264 (49%), Gaps = 37/264 (14%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  YAK+G +  A  LFD+M ++D +S++AL+S                        
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS------------------------ 414

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                  G+   G + EA  VF +MQ    EP   T VS + AC+ L  L+ G+  HG +
Sbjct: 415 -------GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV 467

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           ++  L     + NAL DMYAK G ID +R +F+ M +R++VSWN MI+GY  +G  K+  
Sbjct: 468 IIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEAT 527

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
            LF EM  LG  PD VT   +L AC  +G + +    FHV++    +      +  M+  
Sbjct: 528 ALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDL 587

Query: 298 YTQNGKEEDALILFNEM-LSEDVR 320
            ++ G  ++A      M L  DVR
Sbjct: 588 LSRGGFLDEAYEFIQSMPLRADVR 611



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 4/166 (2%)

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK--EEDALILFNEMLSEDVRPDKFSIS 327
           +G +  A  LF  I   D   +  +I  Y+ +      D L L+  ML   V P+ ++  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
             + +C+ LA  + G+ +H  A+  G+  DL VS+AL+DMY KC    DA  +F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 388 NVVSWNSMINGYAQNGQDLEALA--LYDKLLQENLKPDSFTFVSVL 431
           ++V+WN+M+ GYA +G    A+A  L  ++    L+P++ T V++L
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 235



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 176/446 (39%), Gaps = 102/446 (22%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID---LFQEMQLLGLNPDEVTVS 261
           G + +A  LFD++ + ++ ++N +I  Y  +  P    D   L++ M    + P+  T  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAY-SSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 262 NILGAC-----FQTGR------------------------------IDDAGRLFHVIKEK 286
             L AC        GR                              + DA  +F  +  +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 287 DNVCWTTMIVGYTQNGKEEDAL--ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           D V W  M+ GY  +G    A+  +L  +M    +RP+  ++ +++   A+  +L  G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 345 VHGKAVVL----------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           VH   +             + D +L+ +AL+DMY KCG    A  VF+ MP RN V+W++
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 395 MINGYAQNGQDLEALALYDKLLQEN---LKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           +I G+    +  +A  L+  +L +    L P S    S L AC   D    G+    ++ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQ-LHALL 366

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---------------------- 489
           A  G+   L     ++++  ++  +D+A+ L   +  K                      
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 490 ------------PNSLIWSTLLSVCA-----MKGDIKHGEMAARHLF-ELEPINAGPYIM 531
                       P++    +L+  C+       G   HG +  R L  E    NA     
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNA----- 481

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNV 557
           L +MYA CGR +    + + M S+++
Sbjct: 482 LIDMYAKCGRIDLSRQVFNMMPSRDI 507



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 93/230 (40%), Gaps = 48/230 (20%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK G++  +R +F+ MP RDI+SWN                        
Sbjct: 476 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN------------------------ 511

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                  T IAG+   G  +EA  +F  M    F P   T +  L+AC+    +  GK  
Sbjct: 512 -------TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHW 564

Query: 179 -----HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISG- 231
                HG  +   +   +     + D+ ++GG +D+A      M  R ++  W  ++   
Sbjct: 565 FHVMRHGYGLTPRMEHYI----CMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 620

Query: 232 --YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
             Y      KK   + QE+   G   + V +SNI  A    GR D+A  +
Sbjct: 621 RVYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSA---AGRFDEAAEV 666


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/637 (35%), Positives = 360/637 (56%), Gaps = 38/637 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R G +     +F  MP++D  S+N  I+GF   G +  AL V +RM+
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +    T  S L  CAQ  D+  G  IH  ++   L  +VFV NAL +MY+K G + 
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV-------- 260
            A+ +FD+M  R+LVSWN +I+ Y +N  P   +  F+ MQL G+ PD +TV        
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 261 --------SNILGACF--------------------QTGRIDDAGRLFHVIKEKDNVCWT 292
                    +ILG                       + G ++ A  +F  +  KD + W 
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWN 394

Query: 293 TMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T++ GYTQNG   +A+  +N M    D  P++ +  S++ + + + +L  G  +H K + 
Sbjct: 395 TLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIK 454

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ V++ LID+Y KCG  +DA ++F  +P    V WN++I     +G+  EAL L
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  +L E +K D  TFVS+LSAC H+ L + GQ  FD +   +GI PSL HY CM++LLG
Sbjct: 515 FKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLG 574

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++KA +L++++P +P++ IW  LLS C + G+ + G +A+  L E++  N G Y++
Sbjct: 575 RAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVL 634

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA   +WE V  +RS  + + ++K   +S + + +K   F + ++THP+   IY+E
Sbjct: 635 LSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKE 694

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   V  D +E+EK + +  HSE+LA+A+ +I  P   +PIRI K
Sbjct: 695 LKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPR-SPIRIFK 753

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           N+RVCGDCH   K+ S I  R I++RDSNRFHHF  G
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 237/521 (45%), Gaps = 79/521 (15%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +  L   C  VN     K+L + + L F +     L  +L++ Y   G +  +R  FD +
Sbjct: 25  FNALFNSCVNVNA---TKKLHALL-LVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYI 80

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             ++I SWN+++SA+ R G   +     +                           Q+FS
Sbjct: 81  HKKNIFSWNSIISAYVRFGKYHEAMNCVN---------------------------QLFS 113

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
                   P  YT    L AC  L+D   GK++H  +       +VFV  +L  +Y++ G
Sbjct: 114 MCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A  +F  M  +++ SWN MISG+ +NG     + +   M+  G+  D +TV++IL 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 266 ACFQT-----------------------------------GRIDDAGRLFHVIKEKDNVC 290
            C Q+                                   GR+ DA  +F  ++ +D V 
Sbjct: 231 VCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVS 290

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W ++I  Y QN     AL  F  M    +RPD  ++ S+ S  ++L+     + + G  +
Sbjct: 291 WNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVI 350

Query: 351 VLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
               +D D+++ +AL++MY K G  + A TVF+ +P ++ +SWN+++ GY QNG   EA+
Sbjct: 351 RREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAI 410

Query: 410 ALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY--AC 465
             Y+ + +  +  P+  T+VS++ A  H    ++G   H   I      +  LD +   C
Sbjct: 411 DAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKN----SLYLDVFVATC 466

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +I+L G+   ++ A+ L   +P +  S+ W+ +++   + G
Sbjct: 467 LIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHG 506



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 136/252 (53%), Gaps = 9/252 (3%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D++  NAL++ +A+ G +     +FD++P +D++S+NT + G+   G + EA+  ++ M
Sbjct: 357 KDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMM 416

Query: 148 QKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           ++ R   P   T VS + A + +  L++G +IH K++  +L  +VFV   L D+Y K G 
Sbjct: 417 EECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGR 476

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A  LF  +     V WN +I+    +G+ ++ + LF++M    +  D +T  ++L A
Sbjct: 477 LEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSA 536

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           C  +G +D+  + F +++++  +      +  M+    + G  E A  L   M    ++P
Sbjct: 537 CSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNM---PIQP 593

Query: 322 DKFSISSVVSSC 333
           D     +++S+C
Sbjct: 594 DASIWGALLSAC 605


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/646 (35%), Positives = 359/646 (55%), Gaps = 60/646 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G +   R +FD+MP RD VS+ T +  +       EAL++   MQ
Sbjct: 122 DVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQ 181

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKGGE 206
               + +    +S +     LLD++ G+ +HG IV  VG+    V +  AL DMY KGG 
Sbjct: 182 FVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGC 241

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  A+ LFDR++ R++VSW +MI+G +++ +  +    F  M    L P+E+T+ +++  
Sbjct: 242 LASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITE 301

Query: 267 CFQTGRIDDAGRLFHV------------------------------------IKEKDNVC 290
           C   G + D G+ FH                                     +K+KD   
Sbjct: 302 CGFVGTL-DLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKI 360

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+ +I  Y      +    LF EML+ DV+P+  ++ S++S CA+  +L  G+  H    
Sbjct: 361 WSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTHAYIN 420

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G++ D+++ +ALI+MY KCG    A ++FN    R++  WN+M+ G++ +G   EAL 
Sbjct: 421 RHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALE 480

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++    ++P+  TFVS+  AC H+ L E                    HY C+++LL
Sbjct: 481 LFSEMESHGVEPNDITFVSIFHACSHSGLME--------------------HYGCLVDLL 520

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +D+A ++I+++P +PN++IW  LL+ C +  ++  GE+AAR + EL+P N G  +
Sbjct: 521 GRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSV 580

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           + SN+YA+  RW DV S+R +M    +KK    SWIE+   VH F S D+   +T  +YE
Sbjct: 581 LKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYE 640

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            ++++  KL+E+G++PNT  VL +  EEEK  ++ YHSEKLA A+ LI    G TPIRI+
Sbjct: 641 MVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPG-TPIRIV 699

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+C DCH   K  S I GRTII+RD NRFHHF  G CSC   W
Sbjct: 700 KNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 217/482 (45%), Gaps = 44/482 (9%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L AH       +    F +       +YN  I+ + N    + +   +  M+ +     D
Sbjct: 28  LHAHFIKTQFHNPHPFFSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALD 87

Query: 157 -YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +   S L ACAQ      G+++HG         +VFV NAL +MY K G +  AR +FD
Sbjct: 88  NFILPSLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFD 147

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQT 270
           +M  R++VSW  M+  Y+++    + + L +EMQ +G+    V + +++         ++
Sbjct: 148 QMPERDVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKS 207

Query: 271 GR--------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
           GR                                +  A RLF  + ++  V WT MI G 
Sbjct: 208 GRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGC 267

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++ + ++    FN ML E + P++ ++ S+++ C  + +L  G+  H   +  G    L
Sbjct: 268 IRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSL 327

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +ALIDMY KCG    A  +FN +  ++V  W+ +I+ YA      +   L+ ++L  
Sbjct: 328 ALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNN 387

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           ++KP++ T VS+LS C  A   + G+     I+  HG+   +     +IN+  +  DV  
Sbjct: 388 DVKPNNVTMVSLLSLCAEAGALDLGKWTHAYINR-HGLEVDVILETALINMYAKCGDVTI 446

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY-IMLSNMYA 537
           A  L      + +  +W+T+++  +M G    G+ A     E+E     P  I   +++ 
Sbjct: 447 ARSLFNEAMQR-DIRMWNTMMAGFSMHGC---GKEALELFSEMESHGVEPNDITFVSIFH 502

Query: 538 AC 539
           AC
Sbjct: 503 AC 504


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/644 (35%), Positives = 364/644 (56%), Gaps = 38/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  N LLS + +   + D R +FDKM +RD+VS+NT I G++  G   E++++F  M
Sbjct: 308 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM 367

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             ++F+P   T  S L AC  L DL  GK +H  ++      +    N L +MYAK G +
Sbjct: 368 V-NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 426

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------- 259
             ++ +F  M  ++ VSWN MI+ Y++NG   + + LF+ M+   + PD VT        
Sbjct: 427 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMS 485

Query: 260 --------------------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWT 292
                                     VSN L   + + G + D+ ++F  +K +D + W 
Sbjct: 486 TQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 545

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+I     +      L + + M +E V PD  ++ S++  C+ LA+   G+ +HG    L
Sbjct: 546 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 605

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G++ D+ V + LI+MY KCG   +++ VF +M T++VV+W ++I+     G+  +A+  +
Sbjct: 606 GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAF 665

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++    + PD   FV+++ AC H+ L E G N+F  +   + I P ++HYAC+++LL R
Sbjct: 666 GEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSR 725

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S+ +DKA D I S+P KP+S IW  LLS C M GD +  +  +  + EL P + G Y+++
Sbjct: 726 SALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLV 785

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YAA G+W+ V SIR S+K++ +KK    SW+EI NKV+ F +  +   + E + + L
Sbjct: 786 SNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLL 845

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L   + + G+  N + VLHD  E+EK   +C HSE+LA+A+ L+    G TP+++MKN
Sbjct: 846 GMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKPG-TPLQVMKN 904

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH   K+ S I  R +++RD+NRFH F  G CSC D W
Sbjct: 905 LRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 155/520 (29%), Positives = 254/520 (48%), Gaps = 81/520 (15%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P  +   +N+ I    + G   EAL ++S  Q+ R +P  YT  S +NACA LLD    K
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            IH +++    G ++++ NAL DMY +  ++DKAR +F+ M  R++VSWN +ISGY  NG
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---------------------- 274
              + ++++   + LG+ PD  T+S++L AC   G ++                      
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 275 -------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                        D  R+F  +  +D V W TMI GY+Q G  E+++ LF EM+++  +P
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKP 373

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +I+S++ +C  L  L  G+ VH   +  G + D   S+ LI+MY KCG    +  VF
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVF 433

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
           + M  ++ VSWNSMIN Y QNG   EA+ L+ K+++ ++KPDS T+V +LS         
Sbjct: 434 SGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLX 492

Query: 435 ----LHADLFERGQNH------------------------FDSISAVHGITPSLDHYACM 466
               LH DL + G N                         F+++ A   IT +    +C+
Sbjct: 493 LGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCV 552

Query: 467 INLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
                 S D +  + +I  +  +   P+     ++L VC++    + G+     +F+L  
Sbjct: 553 -----HSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGL 607

Query: 524 INAGPYI-MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  P   +L  MY+ CG   +   +   MK+K+V  + A
Sbjct: 608 ESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTA 647



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 151/555 (27%), Positives = 251/555 (45%), Gaps = 78/555 (14%)

Query: 13  TLYSRGQAA--TEEAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +LYS  Q      + YT   ++  C  + D E+AK +   + L     +  ++ N L+  
Sbjct: 160 SLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRV-LXMGFGSDLYIGNALIDM 218

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y +   L  AR +F++MPLRD++SWN+L+S                              
Sbjct: 219 YCRFNDLDKARKVFEEMPLRDVVSWNSLIS------------------------------ 248

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
            G+   G+  EAL+++ R +     P  YT  S L AC  L  +  G  IHG I    + 
Sbjct: 249 -GYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIK 307

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +V V N L  MY K   +   R +FD+M  R+ VSWN MI GY + G  ++ I LF EM
Sbjct: 308 KDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM 367

Query: 249 QLLGLNPDEVTVSNILGACFQTGRID---------------------------------- 274
            +    PD +T+++IL AC   G ++                                  
Sbjct: 368 -VNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNL 426

Query: 275 -DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             +  +F  +K KD+V W +MI  Y QNG  ++A+ LF +M+  DV+PD  +   ++S  
Sbjct: 427 LASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMS 485

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
            +L  L  G+ +H     +G + +++VS+ L+DMY KCG   D+  VF  M  R++++WN
Sbjct: 486 TQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 545

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           ++I     +      L +  ++  E + PD  T +S+L  C       +G+     I  +
Sbjct: 546 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 605

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
            G+   +     +I +  +   +  +  + K +  K + + W+ L+S C M G+   G+ 
Sbjct: 606 -GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTK-DVVTWTALISACGMYGE---GKK 660

Query: 514 AARHLFELEPINAGP 528
           A R   E+E     P
Sbjct: 661 AVRAFGEMEAAGIVP 675



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 6/177 (3%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           SIS  ++S A    L+    +H   + LG+   ++ S+ LI  Y        +++VF + 
Sbjct: 77  SISRALASAATTTQLHK---LHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLA 133

Query: 385 -PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            P+ NV  WNS+I     NG   EAL+LY +  +  L+PD++TF SV++AC     FE  
Sbjct: 134 SPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMA 193

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++  D +  + G    L     +I++  R +D+DKA  + + +P + + + W++L+S
Sbjct: 194 KSIHDRVLXM-GFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLIS 248


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/675 (34%), Positives = 358/675 (53%), Gaps = 67/675 (9%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD+   N+L+  +   G +  +R +FDKM  R+ VS+ + I G+A +G  +EA+ +F  M
Sbjct: 172 RDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEM 231

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +    P   T V  ++ACA+L DL+ G+Q+   I    L  N  + NAL DMY K G I
Sbjct: 232 VEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           DKAR +FD   ++NLV +N ++S Y++ G  ++ + +  EM   G  PD +T+ + + AC
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSAC 351

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G+ + A R+F  +  K  V W 
Sbjct: 352 SELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWN 411

Query: 293 TMIVGYTQNGKEE-------------------------------DALILFNEMLSEDVRP 321
           ++I G+ +NG  E                               +A+ LF  M SE +  
Sbjct: 412 SLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITA 471

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           DK ++  V S+C  L +L   + +HG      +  D+ + +AL+DM+ +CG    A  VF
Sbjct: 472 DKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVF 531

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           N M  R+V +W + I   A  G    A+ L+D++LQ+ +KPD   FV++L+A  H  L E
Sbjct: 532 NKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVE 591

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           +G + F S+  ++GI P   HY CM++LLGR+  + +A+ LI S+  +PN +IW +LL+ 
Sbjct: 592 QGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAA 651

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C +  ++     AA  + EL+P   G +++LSN+YA+ GRW+DVA +R  +K K   K  
Sbjct: 652 CRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMP 711

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
             S IEI+ K+ +F + D +HPE   I   L ++  +L++ G+ P+   VL D  E+EK 
Sbjct: 712 GSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKE 771

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             +  HSEKLA+A+ LI    G+ PIR+ KN+R+C DCH F K  S    R II+RD+NR
Sbjct: 772 YLLSRHSEKLAIAFALISTGQGM-PIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNR 830

Query: 682 FHHFVGGNCSCKDNW 696
           FH F  G CSC D W
Sbjct: 831 FHFFQQGFCSCGDYW 845



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 123/456 (26%), Positives = 203/456 (44%), Gaps = 80/456 (17%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +++ I GF+  G   +A+ VF ++      P ++T    L+AC +   L  G Q+HG IV
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 ++FV N+L   Y + GEID  R +FD+M+ RN+VSW  +I GY K G  K+ + 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 244 LFQEMQLLGLNPDEVTVSNILGAC-----------------------------------F 268
           LF EM  +G+ P+ VT+  ++ AC                                    
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYM 286

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G ID A ++F    +K+ V + T++  Y + G   + L +  EML    RPD+ ++ S
Sbjct: 287 KCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLS 346

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV--------------- 373
            VS+C++L  +  G+  HG  +  G++    V +A+I+MY KCG                
Sbjct: 347 AVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKT 406

Query: 374 ----------------TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
                            + AW +F+ MP  ++VSWN+MI    Q     EA+ L+  +  
Sbjct: 407 RVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQS 466

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HY-----ACMINLLG 471
           E +  D  T V V SAC +           D    +HG     D H+       ++++  
Sbjct: 467 EGITADKVTMVGVASACGYL-------GALDLAKWIHGYIKKKDIHFDMHLGTALVDMFA 519

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           R  D   A+ +   +  +  S  W+  +   AM+G+
Sbjct: 520 RCGDPQSAMQVFNKMVKRDVS-AWTAAIGAMAMEGN 554



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 143/306 (46%), Gaps = 9/306 (2%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+ ++DV   K    ++  N  E       N +++ Y K GK   A  +FD+M  +  +S
Sbjct: 351 CSELDDVSCGKWCHGYVLRNGLEGWDNVC-NAIINMYMKCGKQEMACRVFDRMLNKTRVS 409

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+L++   R+G ++    +F  MP  D VS+NT I     +   +EA+++F  MQ +  
Sbjct: 410 WNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI 469

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
                T V   +AC  L  L   K IHG I   ++  ++ +  AL DM+A+ G+   A  
Sbjct: 470 TADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQ 529

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F++M  R++ +W   I      G     I+LF EM   G+ PD V    +L A    G 
Sbjct: 530 VFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGL 589

Query: 273 IDDAGRLFHVIKE-----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           ++    +F  +K+        V +  M+    + G   +AL L N M  E   P+     
Sbjct: 590 VEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQME---PNDVIWG 646

Query: 328 SVVSSC 333
           S++++C
Sbjct: 647 SLLAAC 652



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 60/376 (15%)

Query: 235 NGQPKKCIDLFQEMQLL------GLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKE 285
            G  KKC  + +  QL       GLN   ++++N++ +C + G  +    A +   +  E
Sbjct: 37  TGSFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIE 96

Query: 286 KDNVCWT-----TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            + +  T     ++I G++  G    A+++F +++     PD F+   V+S+C K A+L 
Sbjct: 97  DNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALT 156

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G  VHG  V +G + D+ V ++LI  Y +CG  D    VF+ M  RNVVSW S+I GYA
Sbjct: 157 EGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYA 216

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           + G   EA++L+ ++++  ++P+S T V V+SAC      + G+     I  +      L
Sbjct: 217 KRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE-----L 271

Query: 461 DHYACMINLL----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLS----------VCAMKG 506
           +  A M+N L     +   +DKA  +      K N ++++T++S          V A+ G
Sbjct: 272 EVNALMVNALVDMYMKCGAIDKARKIFDECVDK-NLVLYNTIMSNYVRQGLAREVLAVLG 330

Query: 507 D-IKHGEMAARHLF--------ELEPINAGP----YIM-------------LSNMYAACG 540
           + +KHG    R           EL+ ++ G     Y++             + NMY  CG
Sbjct: 331 EMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCG 390

Query: 541 RWEDVASIRSSMKSKN 556
           + E    +   M +K 
Sbjct: 391 KQEMACRVFDRMLNKT 406


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/633 (36%), Positives = 342/633 (54%), Gaps = 36/633 (5%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            L+  +++ G   D   +F  +   D V ++  I     +G S E++++F  M+     P
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT  S L+A     +L+ G+ IH  +       +V V NAL  MY K G +     L+
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQ 269
           + M +R+L+SWN  +SG    G   + + +F  M   G  P+  T  +ILG+C       
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 270 TGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
            GR                              ++DA   F+ +  +D   WT +I  Y 
Sbjct: 534 YGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYA 593

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q  + E AL  F +M  E V+P++F+++  +S C+ LASL  GQ +H      G   D+ 
Sbjct: 594 QTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMF 653

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V SAL+DMY KCG  ++A  +F  +  R+ ++WN++I GYAQNGQ  +AL  +  +L E 
Sbjct: 654 VGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEG 713

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           + PD  TF  +LSAC H  L E G+ HF+S+    GI+P++DH ACM+++LGR    D+ 
Sbjct: 714 ISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDEL 773

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            D I+ +    N+LIW T+L    M  ++  GE AA  LFEL+P     YI+LSN++A  
Sbjct: 774 EDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATE 833

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRW+DV  +RS M SK VKK    SW+E + +VH FVS D +HP+ + I+ +L +L ++L
Sbjct: 834 GRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDREL 893

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
               + P T+ VLH+  E EK +++ +HSE+LAL + LI        IRI KN+R+C DC
Sbjct: 894 ASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTS-SEKKIRIFKNLRICRDC 952

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           H  MK  S I  + I++RD  RFHHF  G CSC
Sbjct: 953 HDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 143/547 (26%), Positives = 257/547 (46%), Gaps = 88/547 (16%)

Query: 87  LRDIIS-----WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           ++D+I+     W +L++ +A+       R +  KMP RD VS+   I G   +GF+ +++
Sbjct: 139 VKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSI 198

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F  MQ +   P ++T  + L AC+  + L  GKQ+H +     L  ++FV +AL D+Y
Sbjct: 199 YLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLY 258

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK GEI+ A  +F  M  +N V+WN++++GY + G     + LF  M  L +  +E T++
Sbjct: 259 AKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLT 318

Query: 262 NILGACFQT--------------------------GRID---------DAGRLFHVIKEK 286
            +L  C  +                          G +D         DA  +F  IK+ 
Sbjct: 319 TVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKP 378

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V W+ +I    Q G+ E+++ LF+ M   D  P++++I S++S+     +L +GQ +H
Sbjct: 379 DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIH 438

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                 G + D+ VS+AL+ MY K G   D   ++  M  R+++SWN+ ++G    G   
Sbjct: 439 ACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYD 498

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHG 455
             L ++  +L+E   P+ +TF+S+L +C           +HA +    +N  D  + V  
Sbjct: 499 RPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHII---KNQLDDNNFV-- 553

Query: 456 ITPSLDHYA-CM-----------------------INLLGRSSDVDKAVDLIKSLPH--- 488
            T  +D YA CM                       I    +++  +KA++  + +     
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE---LEPINAGPYIMLSNMYAACGRWEDV 545
           KPN    +  LS C+    ++ G+     +F+   +  +  G    L +MYA CG  E+ 
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS--ALVDMYAKCGCMEEA 671

Query: 546 ASIRSSM 552
            ++  ++
Sbjct: 672 EALFEAL 678



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 224/496 (45%), Gaps = 68/496 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L+  YAK G++  A  +F  MP ++ ++WN LL+ +A+ G V  +          
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGV---------- 298

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                L++F  M +   +  ++T  + L  CA   +L++G+ IH
Sbjct: 299 ---------------------LKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIH 337

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I+     GN F+   L DMY+K G    A  +F  +   ++V W+ +I+   + GQ +
Sbjct: 338 SLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSE 397

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR--------------------------- 272
           + I LF  M+L    P++ T+ ++L A   TG                            
Sbjct: 398 ESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALV 457

Query: 273 --------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                   + D  +L+  + ++D + W   + G    G  +  L +F  ML E   P+ +
Sbjct: 458 TMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMY 517

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +  S++ SC+ L  +++G+ VH   +   +DD+  V +ALIDMY KC   +DA   FN +
Sbjct: 518 TFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRL 577

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             R++ +W  +I  YAQ  Q  +AL  + ++ QE +KP+ FT    LS C      E GQ
Sbjct: 578 SVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQ 637

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
               S+    G    +   + ++++  +   +++A  L ++L  + +++ W+T++   A 
Sbjct: 638 -QLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRR-DTIAWNTIICGYAQ 695

Query: 505 KGDIKHGEMAARHLFE 520
            G       A R + +
Sbjct: 696 NGQGNKALTAFRMMLD 711



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 171/352 (48%), Gaps = 47/352 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + ++G V D   L++ M  RD +S+N  ++G  + G     L +F  M 
Sbjct: 449 DVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHML 508

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F P  YT +S L +C+ L D+  G+Q+H  I+   L  N FV  AL DMYAK   ++
Sbjct: 509 EEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLE 568

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A   F+R++ R+L +W ++I+ Y +  Q +K ++ F++MQ  G+ P+E T++  L  C 
Sbjct: 569 DADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS 628

Query: 268 ---------------FQTGRIDD-------------------AGRLFHVIKEKDNVCWTT 293
                          F++G + D                   A  LF  +  +D + W T
Sbjct: 629 SLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNT 688

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I GY QNG+   AL  F  ML E + PD  + + ++S+C+     + G V  GK     
Sbjct: 689 IICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACS-----HQGLVEEGKEHFNS 743

Query: 354 VDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMING 398
           +  D  +S      + ++D+  + G  D+       M  ++N + W +++  
Sbjct: 744 MYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGA 795



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 155/322 (48%), Gaps = 35/322 (10%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           + S L  CA    L   K IHG IV   +  +  +  +L ++YAK      AR +  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
           +R++VSW  +I G +  G     I LFQEMQ  G+ P+E T++  L AC           
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G I+ A ++F  + E+++V W  ++ GY Q G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
               L LF  M+  DV+ ++F++++V+  CA   +L  GQV+H   +  G + +  +   
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KCG+  DA  VF  +   ++V W+++I    Q GQ  E++ L+  +   +  P+
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 424 SFTFVSVLSACLHADLFERGQN 445
            +T  S+LSA  +    + GQ+
Sbjct: 415 QYTICSLLSAATNTGNLQYGQS 436



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +F    + D+   +AL+  +A+ G +++  ALF+ +  RD++++NT I G+A  G   +A
Sbjct: 643 VFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKA 702

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALT 198
           L  F  M  +   P   T    L+AC+    +  GK+ H   +  + G +  V +   + 
Sbjct: 703 LTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKE-HFNSMYRDFGISPTVDHCACMV 761

Query: 199 DMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLF----QEMQLLGL 253
           D+  + G+ D+      +M  ++N + W  ++      G  K   +L        +L  L
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVL------GASKMHNNLVLGEKAANKLFEL 815

Query: 254 NPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEK 286
            P+E +   +L   F T GR DD  R+  ++  K
Sbjct: 816 QPEEESSYILLSNIFATEGRWDDVKRVRSLMSSK 849


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 367/676 (54%), Gaps = 43/676 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIIS----WNALLSAHARSGSVQDLRALFD--KM 116
           N LL+   ++  L +A  +  ++ + +  S    +N L++ +A+ G +     LF     
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
             +  V++ + I   ++     +AL +F++M+     P  +T  S L+A A  + +  G+
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+H  I       N+FV  AL DMYAK  ++  A  +FD+M  RNLVSWN MI G+  N 
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 237 QPKKCIDLFQE-MQLLGLNPDEVTVSNILGACFQTGRI---------------------- 273
              + + +F++ ++   + P+EV+VS++L AC   G +                      
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVM 385

Query: 274 -------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                        D+  +LF  + ++D V W  +++G+ QN K E+A   F  M  E + 
Sbjct: 386 NSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGIL 445

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD+ S S+V+ S A LA+L+ G  +H + + LG   ++ +  +LI MY KCG   DA+ V
Sbjct: 446 PDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQV 505

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +   NV+SW +MI+ Y  +G   + + L++ +L E ++P   TFV VLSAC H    
Sbjct: 506 FEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRV 565

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           E G  HF+S+  +H + P  +HYACM++LLGR+  +D+A   I+S+P KP   +W  LL 
Sbjct: 566 EEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLG 625

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C   G++K G  AA  LFE+EP N G Y++L+NM    GR E+   +R  M    V+K 
Sbjct: 626 ACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKE 685

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SWI++ N    F + DR+H  ++ IY+ L KL K +++ G+   T+ V +  +E E+
Sbjct: 686 PGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEE 745

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + + YHSEKLALA+ L+  P   +PIRI KN+R CG CH  MK AS I  R II+RD N
Sbjct: 746 EQGLWYHSEKLALAFGLLTLPID-SPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDIN 804

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G CSC D W
Sbjct: 805 RFHRFADGFCSCGDYW 820



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ++ ++++  +  SL H   +H + ++        + + LI++Y KCG  + A  +F++  
Sbjct: 145 LNHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITH 204

Query: 386 T--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
              + +V+W S+I   +     L+AL+L++++      P+ FTF S+LSA     +   G
Sbjct: 205 HHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           Q    S+   HG   ++     ++++  + +D+  AV +   +P + N + W++++
Sbjct: 265 QQ-LHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPER-NLVSWNSMI 318


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 344/640 (53%), Gaps = 72/640 (11%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +  AI     +   REA+Q+  R +K    P   T+ + +  C+Q   L  GK++H  I 
Sbjct: 57  FGEAIDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIR 112

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI-------------- 229
                  + + N L  MYAK G +  AR +FD M NR+L SWN+M+              
Sbjct: 113 TSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARK 172

Query: 230 -----------------SGYLKNGQPKKCIDLFQEMQLL--------------------- 251
                            +GY+K  QP++ + L+  MQ +                     
Sbjct: 173 LFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVK 232

Query: 252 ---------------GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                          GL+ DEV  S+++    + G ID+A  +F  I EKD V WT+MI 
Sbjct: 233 CIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMID 292

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y ++ +  +   LF+E++    RP++++ + V+++CA L +   G+ VHG    +G D 
Sbjct: 293 RYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDP 352

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
               SS+L+DMY KCG  + A  V +  P  ++VSW S+I G AQNGQ  EAL  +D LL
Sbjct: 353 YSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLL 412

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +   KPD  TFV+VLSAC HA L E+G   F SI+  H ++ + DHY C+++LL RS   
Sbjct: 413 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRF 472

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++   +I  +P KP+  +W+++L  C+  G+I   E AA+ LF++EP N   Y+ ++N+Y
Sbjct: 473 EQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 532

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA G+WE+   +R  M+   V K    SW EI  K H F++ D +HP    I E L +L 
Sbjct: 533 AAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELR 592

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK++E G+ P T LVLHD ++E+K +++ YHSEKLA+A+ ++    G T I++ KN+R C
Sbjct: 593 KKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG-TAIKVFKNLRSC 651

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +KF S+I  R I +RDS RFH F  G CSC D W
Sbjct: 652 VDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  192 bits (487), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 134/471 (28%), Positives = 227/471 (48%), Gaps = 51/471 (10%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           LR+A+  L  R +      Y  L+  C++   +E  K++  H+  + + P    + NRLL
Sbjct: 70  LREAVQ-LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRLL 127

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             YAK G L  AR +FD+MP RD+ SWN +++ +A  G +++ R LFD+M  +DS S+  
Sbjct: 128 RMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTA 187

Query: 127 AIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
            + G+  K    EAL ++S MQ+     P  +T   A+ A A +  +RRGK+IHG IV  
Sbjct: 188 MVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRA 247

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  +  + ++L DMY K G ID+AR +FD++  +++VSW  MI  Y K+ + ++   LF
Sbjct: 248 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLF 307

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
            E+      P+E T + +L AC                                    + 
Sbjct: 308 SELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKC 367

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G I+ A  +     + D V WT++I G  QNG+ ++AL  F+ +L    +PD  +  +V+
Sbjct: 368 GNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVL 427

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMM 384
           S+C      + G V  G      + +   +S      + L+D+  + G  +   +V + M
Sbjct: 428 SACT-----HAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482

Query: 385 PTR-NVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSA 433
           P + +   W S++ G +  G  DL   A  +    E   P ++  ++ + A
Sbjct: 483 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYA 533


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 333/585 (56%), Gaps = 40/585 (6%)

Query: 150 DRFEP---TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           D F P   T Y + S L +C     L  GKQ+H +     +  N  +   L  +YA    
Sbjct: 38  DSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNS 97

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  AR LFD++  +NL  WN++I GY  NG     I L+ +M   GL PD  T+  +L A
Sbjct: 98  LLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKA 157

Query: 267 C-----------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G + DAGR+F  I  +D V W
Sbjct: 158 CSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLW 217

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            +M+  Y QNG  ++++ L  EM +  VRP + ++ +V+SS A +A L +G+ +HG    
Sbjct: 218 NSMLAAYAQNGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWR 277

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G   +  V +ALIDMY KCG    A  +F  +  + VVSWN++I GYA +G  + AL L
Sbjct: 278 HGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDL 337

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +DK+ +E+ +PD  TFV VL+AC    L + G+  ++ +   +GITP++ HY CMI+LLG
Sbjct: 338 FDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLG 396

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
               +D+A DLI+++  KP+S +W  LL+ C + G+++  E+A   L ELEP ++G Y++
Sbjct: 397 HCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVI 456

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+NMYA  G+WE V  +R  M  K +KK  A SWIE+ NKV+ F++ D +H  ++ IY E
Sbjct: 457 LANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAE 516

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L +L   + EAG++P+T  V HD +E+EK   +C HSE+LA+A+ LI    G T + I K
Sbjct: 517 LKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPG-TRLLITK 575

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R+C DCH+ +KF S I+ R I +RD NR+H F  G CSC D+W
Sbjct: 576 NLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 198/446 (44%), Gaps = 80/446 (17%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF---LHNRLLHFYAKSGKL 75
           Q  T   YT L+  C     +   K+L +     FY     +   L  +L+H YA S   
Sbjct: 43  QPTTHYGYTSLLQSCIDSKALNPGKQLHA----QFYHLGIAYNQDLATKLVHLYAVS--- 95

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
                             N+LL+A          R LFDK+P ++   +N  I G+A  G
Sbjct: 96  ------------------NSLLNA----------RNLFDKIPKQNLFLWNVLIRGYAWNG 127

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
               A+ ++ +M      P ++T    L AC+ L  +  G+ IH  ++      ++FV  
Sbjct: 128 PHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGA 187

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
           AL DMYAK G +  A  +FD++  R+ V WN M++ Y +NG P + I L +EM   G+ P
Sbjct: 188 ALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRP 247

Query: 256 DEVTVSNILG-----ACFQTGR------------------------------IDDAGRLF 280
            E T+  ++      AC   GR                              +  A  LF
Sbjct: 248 TEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALF 307

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             ++EK  V W  +I GY  +G    AL LF++M  ED RPD  +   V+++C++   L 
Sbjct: 308 ERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLD 366

Query: 341 HGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMING 398
            G+ ++   V   G+   +   + +ID+   CG  D+A+ +  NM    +   W +++N 
Sbjct: 367 EGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNS 426

Query: 399 YAQNGQ-DLEALALYDKLLQENLKPD 423
              +G  +L  LAL +KL++  L+PD
Sbjct: 427 CKIHGNVELAELAL-EKLIE--LEPD 449


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/638 (36%), Positives = 351/638 (55%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL+  + +   V   R +FDKMP RD+V +NT I G        +++QVF  M      
Sbjct: 142 SALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVR 201

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  + L A A++ +++ G  I    +      + +V   L  +++K  ++D AR L
Sbjct: 202 LDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLL 261

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM----------QLLGLNPDEVTVSN- 262
           F  +   +LVS+N +ISG+  NG+ +  +  F+E+           ++GL P      + 
Sbjct: 262 FGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHL 321

Query: 263 -----ILGACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                I G C ++G                    ID A +LF    EK    W  MI GY
Sbjct: 322 HLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGY 381

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q+G  E A+ LF EM++ +  P+  +I+S++S+CA+L +L  G+ VH       ++ ++
Sbjct: 382 AQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNI 441

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS+ALIDMY KCG   +A  +F++   +N V+WN+MI GY  +G   EAL L++++L  
Sbjct: 442 YVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHL 501

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +P S TF+SVL AC HA L   G   F ++   + I P  +HYACM+++LGR+  ++K
Sbjct: 502 GFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEK 561

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A++ I+ +P +P   +W TLL  C +  D     +A+  LFEL+P N G Y++LSN+Y+ 
Sbjct: 562 ALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSV 621

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              +   AS+R ++K +N+ K    + IE++   H FV  DR+H +T  IY +L +L  K
Sbjct: 622 ERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTSIYAKLEELTGK 681

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++E G+   T   LHD +EEEK      HSEKLA+A+ LI    G T IRI+KN+RVC D
Sbjct: 682 MREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPG-TEIRIIKNLRVCLD 740

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S I  R I++RD+NRFHHF  G CSC D W
Sbjct: 741 CHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/447 (21%), Positives = 187/447 (41%), Gaps = 68/447 (15%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           + H +++      ++     LT      G    AR LF  +   ++  +N++I G+  + 
Sbjct: 26  ETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFSFSP 85

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVS--------NILGACFQT------------------ 270
                      ++   L+PD  T +        + LG C                     
Sbjct: 86  DASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCLHAHAVVDGFDSNLFVASALV 145

Query: 271 ------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                  R+  A ++F  + ++D V W TMI G  +N   +D++ +F +M+++ VR D  
Sbjct: 146 DLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDST 205

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++++V+ + A++  +  G  +   A+ LG   D  V + LI ++ KC   D A  +F M+
Sbjct: 206 TVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCEDVDTARLLFGMI 265

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV-----------LSA 433
              ++VS+N++I+G++ NG+   A+  + +LL    +  S T V +           L+ 
Sbjct: 266 RKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLAC 325

Query: 434 CLHADLFERGQNHFDSIS-AVHGITPSLDH------------------YACMINLLGRSS 474
           C+     + G     S+S A+  I   L+                   +  MI+   +S 
Sbjct: 326 CIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSG 385

Query: 475 DVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI- 530
             + A+ L + +      PN +  +++LS CA  G +  G+ +   L + + +    Y+ 
Sbjct: 386 LTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGK-SVHQLIKSKNLEQNIYVS 444

Query: 531 -MLSNMYAACGRWEDVASIRSSMKSKN 556
             L +MYA CG   + + +      KN
Sbjct: 445 TALIDMYAKCGNISEASQLFDLTSEKN 471


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 366/652 (56%), Gaps = 50/652 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G +   + L      RD V++NT ++         EAL+    M  +  E
Sbjct: 240 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 299

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P ++T  S L AC+ L  LR GK++H   +  G+L  N FV +AL DMY    ++   R 
Sbjct: 300 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGACFQTG 271
           +FD M +R +  WN MI+GY +N   K+ + LF  M+   GL  +  T++ ++ AC ++G
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419

Query: 272 -----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIV 296
                                              +ID A R+F  ++++D V W TMI 
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 297 GYTQNGKEEDALILFNEMLSED-----------VRPDKFSISSVVSSCAKLASLYHGQVV 345
           GY  +   EDAL+L ++M + +           ++P+  ++ +++ SCA L++L  G+ +
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  A+   +  D+ V SAL+DMY KCG    +  VF+ +P +NV++WN +I  Y  +G  
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EA+ L   ++ + +KP+  TF+SV +AC H+ + + G   F  +   +G+ PS DHYAC
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           +++LLGR+  + +A  L+  +P   N    WS+LL    +  +++ GE+AA++L +LEP 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
            A  Y++L+N+Y++ G W+    +R +MK + V+K    SWIE  ++VHKFV+ D +HP+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +E +   L  L +++++ G+ P+T  VLH+ +E+EK   +C HSEKLA+A+ ++    G 
Sbjct: 780 SEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG- 838

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IR+ KN+RVC DCHL  KF S I+ R IILRD  RFH F  G CSC D W
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 251/556 (45%), Gaps = 90/556 (16%)

Query: 7   LRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           LR+A+ T   +   G      A+  L+     + D+EL K++ +H+    Y  ++  + N
Sbjct: 78  LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L++ Y K G                              G+V  +   FD++  R+ VS
Sbjct: 138 TLVNLYRKCGDF----------------------------GAVYKV---FDRISERNQVS 166

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHG 180
           +N+ I+   +      AL+ F  M  +  EP+ +T VS + AC+ L     L  GKQ+H 
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 181 -KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +  G L  N F+ N L  MY K G++  ++ L      R+LV+WN ++S   +N Q  
Sbjct: 227 YGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTGRIDD-------- 275
           + ++  +EM L G+ PDE T+S++L AC                 + G +D+        
Sbjct: 285 EALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL 344

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPD 322
                         R+F  + ++    W  MI GY+QN  +++AL+LF  M  S  +  +
Sbjct: 345 VDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 404

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +++ VV +C +  +    + +HG  V  G+D D  V + L+DMY + G  D A  +F 
Sbjct: 405 STTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-----------QENLKPDSFTFVSVL 431
            M  R++V+WN+MI GY  +    +AL L  K+            + +LKP+S T +++L
Sbjct: 465 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            +C       +G+    + +  + +   +   + ++++  +   +  +  +   +P K N
Sbjct: 525 PSCAALSALAKGK-EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-N 582

Query: 492 SLIWSTLLSVCAMKGD 507
            + W+ ++    M G+
Sbjct: 583 VITWNVIIMAYGMHGN 598



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 22/226 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-I 118
           F+ N L+  Y++ GK+  A  +F KM  RD+++WN +++ +  S   +D   L  KM  +
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
              VS          KG SR +L+           P   T ++ L +CA L  L +GK+I
Sbjct: 501 ERKVS----------KGASRVSLK-----------PNSITLMTILPSCAALSALAKGKEI 539

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +  NL  +V V +AL DMYAK G +  +R +FD++  +N+++WN++I  Y  +G  
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           ++ IDL + M + G+ P+EVT  ++  AC  +G +D+  R+F+V+K
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  ++    ++    +A++ + +M+   ++PD ++  +++ + A L  +  G+ +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 351 VLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
             G   D + V++ L+++Y KCG     + VF+ +  RN VSWNS+I+      +   AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
             +  +L EN++P SFT VSV++AC
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTAC 209



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  YAK G L  +R +FD++P +++I+WN ++ A+   G+ Q+   L   M ++    +
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPT 155
            V++ +  A  ++ G   E L++F  M+ D   EP+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/591 (37%), Positives = 351/591 (59%), Gaps = 14/591 (2%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLL 170
           LF   P  D+  +NT I   +       +L  F ++++     P  +T   AL A A   
Sbjct: 58  LFHHFPNPDTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSR 117

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            LR G Q+H +        ++FV   L  MYA+ G+   AR +FD M+  N+V+WN +++
Sbjct: 118 HLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLT 177

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
              + G  +   D+F  M +  L     + + +L    + G +  A R+F+ +  +D V 
Sbjct: 178 AAFRCGDVEGAQDVFGCMPVRNLT----SWNGMLAGYAKAGELGLARRVFYEMPLRDEVS 233

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG--- 347
           W+TMIVG+  NG  ++A   F E+L E++R ++ S++ V+S+CA+  +   G+++HG   
Sbjct: 234 WSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVE 293

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDL 406
           KA  L V     V++ALID Y KCG    A  VF  MP  R++VSW S+I G A +G   
Sbjct: 294 KAGFLYVGS---VNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGE 350

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA+ L+ ++ +  ++PD  TF+S+L AC H+ L E G   F  +  ++GI P+++HY CM
Sbjct: 351 EAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCM 410

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++L GR++ + KA + I  +P  PN++IW TLL  C++ G+I+  E+    L E++P N+
Sbjct: 411 VDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNS 470

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
           G +++LSN+YA  G+W+DV+SIR +M   ++KK   +S IEID  ++ FV+ ++ +  TE
Sbjct: 471 GDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTE 530

Query: 587 IIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             +E+L +++ +L+ EAG++P  + VLHD +EEEK  S+  HSEKLA A+ + K P G  
Sbjct: 531 EAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRI 590

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +RI+KN+RVCGDCH  MK  S +    II+RD +RFH F  G CSC+D W
Sbjct: 591 -LRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 186/390 (47%), Gaps = 29/390 (7%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T L+       D   A+R+   M     EPN     N +L    + G +  A+D+F  MP
Sbjct: 142 TTLISMYAECGDSGSARRVFDEMS----EPNVV-TWNAVLTAAFRCGDVEGAQDVFGCMP 196

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +R++ SWN +L+ +A++G +   R +F +MP+RD VS++T I GFA+ G   EA   F  
Sbjct: 197 VRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRE 256

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + ++     + +    L+ACAQ      GK +HG +          V NAL D Y+K G 
Sbjct: 257 LLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGN 316

Query: 207 IDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           +  AR +F  M   R++VSW  +I+G   +G  ++ I LF EM+  G+ PD +T  ++L 
Sbjct: 317 VAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLY 376

Query: 266 ACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           AC  +G +++   LF  +K     E     +  M+  Y +  + + A     EM    V 
Sbjct: 377 ACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEM---PVS 433

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD---DDLLVSSALIDMYCKCGVTDDA 377
           P+     +++ +C+   ++   ++V  +   +  D   D +L+S    ++Y   G   D 
Sbjct: 434 PNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLS----NVYAVAGKWKDV 489

Query: 378 WTVFNMM--------PTRNVVSWNSMINGY 399
            ++   M        P  +++  + +I G+
Sbjct: 490 SSIRRTMTEHSMKKTPGWSMIEIDKVIYGF 519


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 363/641 (56%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G +   R +FD+MP RD +S+N  I+G+       E L++F  M+
Sbjct: 229 DVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMR 288

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T  S ++AC  L D R G+++HG ++       V V N+L  M++  G  D
Sbjct: 289 EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWD 348

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F +M  ++LVSW  MISGY KNG P+K ++ +  M+  G+ PDE+T++++L AC 
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    ID A  +FH I  K+ + WT+
Sbjct: 409 GLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTS 468

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I+G   N +  +AL  F +M+   ++P+  ++ SV+S+CA++ +L  G+ +H  A+  G
Sbjct: 469 IILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D  + +AL+DMY +CG  + AW  FN    ++V SWN ++ GYAQ G+   A+ L+ 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+++ ++ PD  TF S+L AC  + +   G  +F+S+     I P+L HYA +++LLGR+
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             ++ A + IK +P  P+  IW  LL+ C +  +++ GE+AA+H+FE++  + G YI+L 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G+W++VA +R  M+   +      SW+E+  +VH F++ D  HP+ + I   L 
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLE 766

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
              +K++  G S  +K    D  +  K +  C HSE+LA+A+ LI    G TPI + KN+
Sbjct: 767 GFYEKMEATGLS-MSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPG-TPIWVTKNL 824

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C +CH  +KF S ++ R I +RD+ +FHHF  G CSC D
Sbjct: 825 YMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 80/509 (15%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-- 182
           N+ I     KG   +AL     MQ+ +    + T+++ L  C        G ++H  +  
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            V  LG  V + NAL  M+ + G++ +A ++F +M  R+L SWN+++ GY K G   + +
Sbjct: 123 TVTRLG--VRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
           +L+  M  +G+ PD  T   +L  C                                   
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G I  A  +F  +  +D + W  MI GY +N    + L LF  M    V PD  +++
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+S+C  L     G+ VHG  +  G   ++ V+++LI M+   G  D+A  VF+ M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           ++VSW +MI+GY +NG   +A+  Y  +  E + PD  T  SVLSAC    L ++G    
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-ML 419

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH------------------- 488
              +   G+T  +     +I++  +   +DKA+++   +P+                   
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRS 479

Query: 489 --------------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG--PYIML 532
                         KPNS+   ++LS CA  G +  G+    H         G  P  +L
Sbjct: 480 FEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALL 539

Query: 533 SNMYAACGR----WEDVASIRSSMKSKNV 557
            +MY  CGR    W    S    + S N+
Sbjct: 540 -DMYVRCGRMEPAWNQFNSCEKDVASWNI 567


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/617 (35%), Positives = 354/617 (57%), Gaps = 37/617 (5%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R+ VS+   I+G +      EA++ F  M+     PT +   SA+ ACA L  +  G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQ+H   +   +G  +FV + L DMY+K G +  A  +F+ M  ++ VSW  MI GY K 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQT----- 270
           G+ ++ +  F++M    +  D+  + + LGAC                    F++     
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 271 ----------GRIDDAGRLFHVIKEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                     G ++ A  +F +  E  NV  +T +I GY +  + E  L +F E+  + +
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            P++F+ SS++ +CA  A+L  G  +H + + +  D+D  VSS L+DMY KCG+ + A  
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQ 300

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
            F+ +     ++WNS+++ + Q+G   +A+ ++++++   +KP++ TF+S+L+ C HA L
Sbjct: 301 AFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGL 360

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            E G ++F S+   +G+ P  +HY+C+I+LLGR+  + +A + I  +P +PN+  W + L
Sbjct: 361 VEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFL 420

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             C + GD + G++AA  L +LEP N+G  ++LSN+YA   +WEDV S+R  M+  NVKK
Sbjct: 421 GACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKK 480

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
              YSW+++  K H F +ED +HP    IYE+L  L+ +++ AG+ P T  V  D  +  
Sbjct: 481 LPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSM 540

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K K +  HSE++A+A+ LI  P G  PI + KN+RVC DCH  +KF S + GR II+RD+
Sbjct: 541 KEKLLHRHSERIAVAFALISMPIG-KPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 599

Query: 680 NRFHHFVGGNCSCKDNW 696
           +RFHHF  G+CSC D W
Sbjct: 600 SRFHHFTDGSCSCGDYW 616



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 199/468 (42%), Gaps = 75/468 (16%)

Query: 6   KLRQAIDTLYSR---GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K  +AI T       G+  T+ A++  +  C  +  +E+ K++   + L F   +  F+ 
Sbjct: 21  KFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHC-LALKFGIGSELFVG 79

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + L   Y+K G +F                               D   +F++MP +D V
Sbjct: 80  SNLEDMYSKCGAMF-------------------------------DACKVFEEMPCKDEV 108

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+   I G++  G   EAL  F +M  +      +   S L AC  L   + G+ +H  +
Sbjct: 109 SWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSV 168

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKC 241
           V      ++FV NALTDMY+K G+++ A  +F   +  RN+VS+  +I GY++  Q +K 
Sbjct: 169 VKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKG 228

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACF--------------------------------- 268
           + +F E++  G+ P+E T S+++ AC                                  
Sbjct: 229 LSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDM 288

Query: 269 --QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             + G ++ A + F  I +   + W +++  + Q+G  +DA+ +F  M+   V+P+  + 
Sbjct: 289 YGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF 348

Query: 327 SSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S+++ C+    +  G    +      GV       S +ID+  + G   +A    N MP
Sbjct: 349 ISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMP 408

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
              N   W S +     +G         +KL++  L+P +   + +LS
Sbjct: 409 FEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVK--LEPKNSGALVLLS 454


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 366/652 (56%), Gaps = 50/652 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G +   + L      RD V++NT ++         EAL+    M  +  E
Sbjct: 240 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 299

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P ++T  S L AC+ L  LR GK++H   +  G+L  N FV +AL DMY    ++   R 
Sbjct: 300 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 359

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGACFQTG 271
           +FD M +R +  WN MI+GY +N   K+ + LF  M+   GL  +  T++ ++ AC ++G
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419

Query: 272 -----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIV 296
                                              +ID A R+F  ++++D V W TMI 
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 479

Query: 297 GYTQNGKEEDALILFNEMLSED-----------VRPDKFSISSVVSSCAKLASLYHGQVV 345
           GY  +   EDAL+L ++M + +           ++P+  ++ +++ SCA L++L  G+ +
Sbjct: 480 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 539

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  A+   +  D+ V SAL+DMY KCG    +  VF+ +P +NV++WN +I  Y  +G  
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EA+ L   ++ + +KP+  TF+SV +AC H+ + + G   F  +   +G+ PS DHYAC
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 659

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           +++LLGR+  + +A  L+  +P   N    WS+LL    +  +++ GE+AA++L +LEP 
Sbjct: 660 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 719

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
            A  Y++L+N+Y++ G W+    +R +MK + V+K    SWIE  ++VHKFV+ D +HP+
Sbjct: 720 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 779

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +E +   L  L +++++ G+ P+T  VLH+ +E+EK   +C HSEKLA+A+ ++    G 
Sbjct: 780 SEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG- 838

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IR+ KN+RVC DCHL  KF S I+ R IILRD  RFH F  G CSC D W
Sbjct: 839 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/556 (24%), Positives = 251/556 (45%), Gaps = 90/556 (16%)

Query: 7   LRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           LR+A+ T   +   G      A+  L+     + D+EL K++ +H+    Y  ++  + N
Sbjct: 78  LREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVAN 137

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L++ Y K G                              G+V  +   FD++  R+ VS
Sbjct: 138 TLVNLYRKCGDF----------------------------GAVYKV---FDRISERNQVS 166

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHG 180
           +N+ I+   +      AL+ F  M  +  EP+ +T VS + AC+ L     L  GKQ+H 
Sbjct: 167 WNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA 226

Query: 181 -KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +  G L  N F+ N L  MY K G++  ++ L      R+LV+WN ++S   +N Q  
Sbjct: 227 YGLRKGEL--NSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLL 284

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTGRIDD-------- 275
           + ++  +EM L G+ PDE T+S++L AC                 + G +D+        
Sbjct: 285 EALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL 344

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPD 322
                         R+F  + ++    W  MI GY+QN  +++AL+LF  M  S  +  +
Sbjct: 345 VDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLAN 404

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +++ VV +C +  +    + +HG  V  G+D D  V + L+DMY + G  D A  +F 
Sbjct: 405 STTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFG 464

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-----------QENLKPDSFTFVSVL 431
            M  R++V+WN+MI GY  +    +AL L  K+            + +LKP+S T +++L
Sbjct: 465 KMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTIL 524

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            +C       +G+    + +  + +   +   + ++++  +   +  +  +   +P K N
Sbjct: 525 PSCAALSALAKGK-EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-N 582

Query: 492 SLIWSTLLSVCAMKGD 507
            + W+ ++    M G+
Sbjct: 583 VITWNVIIMAYGMHGN 598



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 22/226 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-I 118
           F+ N L+  Y++ GK+  A  +F KM  RD+++WN +++ +  S   +D   L  KM  +
Sbjct: 441 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 500

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
              VS          KG SR +L+           P   T ++ L +CA L  L +GK+I
Sbjct: 501 ERKVS----------KGASRVSLK-----------PNSITLMTILPSCAALSALAKGKEI 539

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +  NL  +V V +AL DMYAK G +  +R +FD++  +N+++WN++I  Y  +G  
Sbjct: 540 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 599

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           ++ IDL + M + G+ P+EVT  ++  AC  +G +D+  R+F+V+K
Sbjct: 600 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 645



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 80/145 (55%), Gaps = 1/145 (0%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  ++    ++    +A++ + +M+   ++PD ++  +++ + A L  +  G+ +H    
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 351 VLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
             G   D + V++ L+++Y KCG     + VF+ +  RN VSWNS+I+      +   AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
             +  +L EN++P SFT VSV++AC
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTAC 209



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  YAK G L  +R +FD++P +++I+WN ++ A+   G+ Q+   L   M ++    +
Sbjct: 558 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 617

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPT 155
            V++ +  A  ++ G   E L++F  M+ D   EP+
Sbjct: 618 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 653


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/642 (35%), Positives = 355/642 (55%), Gaps = 43/642 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL+ ++ +G  +D   +F  M  RD +S+N+ +A +   G   + L++ + + +    
Sbjct: 1087 NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 1146

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T  SAL AC+    L   K +H  I+V      + V NAL  MY K G + +A+ +
Sbjct: 1147 MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKV 1206

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
               M   + V+WN +I G+ +N +P + +  ++ ++  G+  + +T+ ++LGAC      
Sbjct: 1207 LQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDL 1266

Query: 268  ---------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                           F++               G ++ +  +F  +  K  + W  M+  
Sbjct: 1267 LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAA 1326

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
               +G  E+AL +F EM +  V  D+FS S  +++ A LA L  GQ +HG  + LG + D
Sbjct: 1327 NAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD 1386

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
            L V++A +DMY KCG   D   V  M+P    R+ +SWN +I+ +A++G   +A   + +
Sbjct: 1387 LHVTNAAMDMYGKCGEMHD---VLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 1443

Query: 415  LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            +L+   KPD  TFVS+LSAC H  L + G  ++DS++   G+ P ++H  C+I+LLGRS 
Sbjct: 1444 MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSG 1503

Query: 475  DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
             +  A   IK +P  PN L W +LL+ C + G+++     A HL EL+P +   Y++ SN
Sbjct: 1504 RLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSN 1563

Query: 535  MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            + A  G+WEDV ++R  M S N+KK  A SW+++ +KVH F   ++ HP+   I  +L +
Sbjct: 1564 VCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGE 1623

Query: 595  LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            L+K  +EAG+ P+T   LHD  EE+K  ++  HSE+LALA+ LI  P   T +RI KN+R
Sbjct: 1624 LMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESST-LRIFKNLR 1682

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            VCGDCH   KF S I+GR I+LRD  RFHHF GG CSC D W
Sbjct: 1683 VCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 165/512 (32%), Positives = 267/512 (52%), Gaps = 36/512 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G V   R +FD MP R  VS+   ++G++  G   +A  +FS M+    +  
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T+ SAL AC  L  L  G Q+ G I  G    N+FV++AL D ++K G+++ A +LF 
Sbjct: 131 QFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFG 190

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M  R++VSWN MI GY   G       +F+ M   GL PD  T+ ++L A  + G +  
Sbjct: 191 TMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLII 250

Query: 276 AGRLFHVIKE-----------------------------------KDNVCWTTMIVGYTQ 300
           A ++  +I +                                   KD    T +I GY  
Sbjct: 251 ANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAH 310

Query: 301 NG-KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
            G    DAL LF EM   ++  D   + S+++ CA LAS   G  +H  A+      D+ 
Sbjct: 311 EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA 370

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +ALIDMY K G  +DA   F+ M  +NV+SW S+I+GYA++G    A++LY K+  + 
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKG 430

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KP+  TF+S+L AC H  L   G   F+++   + I P  +HY+CM++L  R   +++A
Sbjct: 431 FKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEA 490

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            +L+  +  K N+ +W  +L   ++ G +  G+ AA +LF ++P N+  Y++L+++Y+A 
Sbjct: 491 YNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAA 550

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           G W+D   IR  M+ ++ KK A YS+ +   K
Sbjct: 551 GLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 192/415 (46%), Gaps = 66/415 (15%)

Query: 59   TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
             ++   L+HFY   G ++ A+ LF++MP  +++SW +L+                     
Sbjct: 881  VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM--------------------- 919

Query: 119  RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                       G+++ G   E L V+ RM+++       T  +  ++C  L D   G Q+
Sbjct: 920  ----------VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 969

Query: 179  HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
             G I+      +V V N+L  M++    +++A ++FD MN  +++SWN MIS Y  +G  
Sbjct: 970  LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 1029

Query: 239  KKCIDLFQEMQ-----------------------------------LLGLNPDEVTVSNI 263
            ++ +  F  M+                                    LGL+ +    + +
Sbjct: 1030 RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 1089

Query: 264  LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
            L    + GR +DA  +F  + E+D + W +M+  Y Q+GK  D L +  E+L      + 
Sbjct: 1090 LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNH 1149

Query: 324  FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
             + +S +++C+    L   ++VH   +V G  D L+V +AL+ MY K G+  +A  V   
Sbjct: 1150 VTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 1209

Query: 384  MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            MP  + V+WN++I G+A+N +  EA+  Y  + ++ +  +  T VSVL AC   D
Sbjct: 1210 MPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 1264



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 257/511 (50%), Gaps = 43/511 (8%)

Query: 72   SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            +GK  +A  +   + L  I   N L++ +++ G+++  R +FD+M  R+  S++T ++G+
Sbjct: 762  AGKALHAFCIVGSVNL-GIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 820

Query: 132  ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR-RGKQIHGKIVVGNLGGN 190
               G   EA+ +F +M     EP  +   S + AC++   +   G Q+HG +V   + G+
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGD 880

Query: 191  VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-- 248
            V+V  AL   Y   G +  A+ LF+ M + N+VSW  ++ GY  +G P + ++++Q M  
Sbjct: 881  VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 940

Query: 249  ----------------------QLLGLN----------PDEVTVSNILGACFQT-GRIDD 275
                                  Q+LG             D V+V+N L + F +   +++
Sbjct: 941  EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEE 1000

Query: 276  AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
            A  +F  + E D + W  MI  Y  +G   ++L  F+ M       +  ++SS++S C+ 
Sbjct: 1001 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSS 1060

Query: 336  LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
            + +L  G+ +HG  V LG+D ++ + + L+ +Y + G ++DA  VF  M  R+++SWNSM
Sbjct: 1061 VDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSM 1120

Query: 396  INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD-LFERGQNHFDSISAVH 454
            +  Y Q+G+ L+ L +  +LLQ     +  TF S L+AC + + L E    H  ++  V 
Sbjct: 1121 MACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVH--ALIIVA 1178

Query: 455  GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            G    L     ++ + G+   + +A  +++++P +P+ + W+ L+   A + +  +  + 
Sbjct: 1179 GFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHA-ENEEPNEAVK 1236

Query: 515  ARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
            A  L   + I A  YI + ++  AC   +D+
Sbjct: 1237 AYKLIREKGIPAN-YITMVSVLGACSAPDDL 1266



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 130/564 (23%), Positives = 249/564 (44%), Gaps = 82/564 (14%)

Query: 17   RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
             G +  +  +  +   C  + D  L  ++  H+    +E + + + N L+  ++    + 
Sbjct: 941  EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS-VANSLISMFSSFSSVE 999

Query: 77   YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
             A  +FD M   DIISWNA++SA                               +A+ G 
Sbjct: 1000 EACYVFDHMNECDIISWNAMISA-------------------------------YAHHGL 1028

Query: 137  SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             RE+L+ F  M+    E    T  S L+ C+ + +L+ G+ IHG +V   L  NV + N 
Sbjct: 1029 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNT 1088

Query: 197  LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
            L  +Y++ G  + A  +F  M  R+L+SWN M++ Y+++G+    + +  E+  +G   +
Sbjct: 1089 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 1148

Query: 257  EVTVSNILGACF-----------------------------------QTGRIDDAGRLFH 281
             VT ++ L AC                                    + G + +A ++  
Sbjct: 1149 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 1208

Query: 282  VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY- 340
             + + D V W  +I G+ +N +  +A+  +  +  + +  +  ++ SV+ +C+    L  
Sbjct: 1209 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLK 1268

Query: 341  HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            HG  +H   V+ G + D  V ++LI MY KCG  + +  +F+ +  ++ ++WN+M+   A
Sbjct: 1269 HGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANA 1328

Query: 401  QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
             +G   EAL ++ ++    +  D F+F   L+A  +  + E GQ     +    G    L
Sbjct: 1329 HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQ-QLHGLVIKLGFESDL 1387

Query: 461  DHYACMINLLGRSSDVDKAVDLIKSLPHKPN--SLIWSTLLSVCAMKGDIKHGEMAARHL 518
                  +++ G+  ++    D++K LP   N   L W+ L+S  A  G  +     AR  
Sbjct: 1388 HVTNAAMDMYGKCGEMH---DVLKMLPQPINRSRLSWNILISAFARHGCFQ----KARET 1440

Query: 519  FELEPINAGP---YIMLSNMYAAC 539
            F  E +  GP   ++   ++ +AC
Sbjct: 1441 FH-EMLKLGPKPDHVTFVSLLSAC 1463



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 202/426 (47%), Gaps = 58/426 (13%)

Query: 163  LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
            L   +++     GK +H   +VG++   +F  N L +MY+K G I+ AR++FD M +RN 
Sbjct: 751  LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 810

Query: 223  VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG----- 277
             SW+ M+SGY++ G  ++ + LF +M  LG+ P+   V++++ AC ++G + D G     
Sbjct: 811  ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 870

Query: 278  -------------------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                           +LF  + + + V WT+++VGY+ +G   +
Sbjct: 871  FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 930

Query: 307  ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
             L ++  M  E V  ++ + ++V SSC  L     G  V G  +  G +D + V+++LI 
Sbjct: 931  VLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 990

Query: 367  MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
            M+      ++A  VF+ M   +++SWN+MI+ YA +G   E+L  +  +   + + +S T
Sbjct: 991  MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050

Query: 427  FVSVLSACLHADLFERGQNHFDSISAVHGITP--SLDHYACMINLL-------GRSSDVD 477
              S+LS C   D  + G+        +HG+     LD   C+ N L       GRS D  
Sbjct: 1051 LSSLLSVCSSVDNLKWGR-------GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED-- 1101

Query: 478  KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
               +L+     + + + W+++++     G    G      L ++  +    ++  ++  A
Sbjct: 1102 --AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVM--NHVTFASALA 1157

Query: 538  ACGRWE 543
            AC   E
Sbjct: 1158 ACSNPE 1163



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 180/422 (42%), Gaps = 72/422 (17%)

Query: 63   NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
            N L+  Y K G +  A+ +   MP  D ++WNAL+  HA            ++ P     
Sbjct: 1188 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAE-----------NEEP----- 1231

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLD-LRRGKQIHG 180
                            EA++ + ++ +++  P +Y T VS L AC+   D L+ G  IH 
Sbjct: 1232 ---------------NEAVKAY-KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHA 1275

Query: 181  KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             IV+     + +V+N+L  MYAK G+++ + ++FD + N++ ++WN M++    +G  ++
Sbjct: 1276 HIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEE 1335

Query: 241  CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA------------------------ 276
             + +F EM+ +G+N D+ + S  L A      +++                         
Sbjct: 1336 ALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMD 1395

Query: 277  -----GRLFHVIK------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                 G +  V+K       +  + W  +I  + ++G  + A   F+EML    +PD  +
Sbjct: 1396 MYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVT 1455

Query: 326  ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              S++S+C     +  G   +       GV   +     +ID+  + G    A      M
Sbjct: 1456 FVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 1515

Query: 385  PT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            P   N ++W S++     +G    A    + LL+ +   DS  +V   + C  +  +E  
Sbjct: 1516 PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS-AYVLYSNVCATSGKWEDV 1574

Query: 444  QN 445
            +N
Sbjct: 1575 EN 1576



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 134/296 (45%), Gaps = 44/296 (14%)

Query: 45   LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
            + +H+ L  +E +  ++ N L+  YAK G L  +  +FD +  +  I+WNA+++A+A  G
Sbjct: 1273 IHAHIVLTGFESDD-YVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHG 1331

Query: 105  SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
                                              EAL++F  M+        ++    L 
Sbjct: 1332 C-------------------------------GEEALKIFGEMRNVGVNLDQFSFSGGLA 1360

Query: 165  ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
            A A L  L  G+Q+HG ++      ++ V NA  DMY K GE+     +  +  NR+ +S
Sbjct: 1361 ATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLS 1420

Query: 225  WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA-------G 277
            WN++IS + ++G  +K  + F EM  LG  PD VT  ++L AC   G +D+         
Sbjct: 1421 WNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMT 1480

Query: 278  RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            R F V    ++      ++G  ++G+   A     EM    V P+  +  S++++C
Sbjct: 1481 REFGVFPGIEHCVCIIDLLG--RSGRLSHAEGFIKEM---PVPPNDLAWRSLLAAC 1531


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/652 (34%), Positives = 360/652 (55%), Gaps = 44/652 (6%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
            FD      I+++ +L      SGS+Q  R +F ++P   S + N+ I G  +K   +EA
Sbjct: 17  FFDPFTASKIVAFCSL----QESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEA 72

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L  +  M      P  YT  S   +C    +   GKQIH          + + +N L +M
Sbjct: 73  LLFYQEMMVQGLIPDRYTFPSLFKSCR---NSSEGKQIHCHSTKLGFASDTYAQNTLMNM 129

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVT 259
           Y+  G +  AR +FD+M ++ +VSW  MI  + +  QP + + LF  M +   + P+EVT
Sbjct: 130 YSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVT 189

Query: 260 VSNILGACFQT----------GRIDDAGRLFHVI-------------------------K 284
           + N+L AC +             ID+ G   HV+                         +
Sbjct: 190 LVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQ 249

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           EK+   W  MI G+ ++   E+AL+LF EM ++ ++ DK +++S++ +C  L +L  G+ 
Sbjct: 250 EKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKW 309

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H       +D D+ + +AL+DMY KCG  + A  VF+ MP ++V++W ++I G A  GQ
Sbjct: 310 LHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQ 369

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
              AL  +D++  + +KPD+ TFV VL+AC HA   + G +HF+S+S  +GI P+++HY 
Sbjct: 370 AENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYG 429

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            ++++LGR+  + +A +LIKS+P  P+  +   LL  C + G+++  E AA+ L E++P 
Sbjct: 430 GLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPY 489

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           ++G Y++LSN+Y +  +WE+    R  M  + ++K    S IE+   VH+FV  D +H +
Sbjct: 490 HSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQ 549

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +  I E L  +I KL+ AG+ P+   VL D  EEEK   +  HSEKLA+A+ L+    G 
Sbjct: 550 SSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVG- 608

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           TPIR++KN+R+C DCH   K  S +  R II+RD NRFHHF  G CSC+  W
Sbjct: 609 TPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 137/318 (43%), Gaps = 44/318 (13%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E     ++  C R  D+ + KR+  ++D + +  +   L+  L+  Y K G +  ARDLF
Sbjct: 187 EVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVV-LNTVLMDVYCKCGCVQLARDLF 245

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           DK   +++ SWN +++ H    + +                               EAL 
Sbjct: 246 DKAQEKNLFSWNIMINGHVEDSNYE-------------------------------EALL 274

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F  MQ    +    T  S L AC  L  L  GK +H  I    +  +V +  AL DMYA
Sbjct: 275 LFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYA 334

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G I+ A  +F  M  +++++W  +I G    GQ +  +  F EM + G+ PD +T   
Sbjct: 335 KCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVG 394

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM-------IVGYTQNGKEEDALILFNEML 315
           +L AC   G +D+    F+ + +   +  T         I+G      E + LI      
Sbjct: 395 VLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELI-----K 449

Query: 316 SEDVRPDKFSISSVVSSC 333
           S  + PD+F +  ++ +C
Sbjct: 450 SMPMAPDQFVLGGLLGAC 467


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/669 (34%), Positives = 364/669 (54%), Gaps = 72/669 (10%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N  LHF    G + YA   F ++   DI+ WNA+                          
Sbjct: 27  NACLHF----GDVNYAHKAFREVSEPDILLWNAI-------------------------- 56

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                I G+  K      ++++  MQ  +  P  +T +  L AC        GKQIHG+ 
Sbjct: 57  -----IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQT 111

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                G NVFV+N+L  MYAK G+I  AR +FD++++R +VSW  +ISGY++NG P + +
Sbjct: 112 FKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEAL 171

Query: 243 DLFQEMQLLGLNPDEVTVSNI----------------------LGACFQT---------- 270
           ++F+EM+   + PD + + ++                      LG  F+           
Sbjct: 172 NVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMY 231

Query: 271 ---GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
              G ++ A   F+ +++ + + W  MI GY  NG  E+A+ LF EM+++++R D  ++ 
Sbjct: 232 AKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMR 291

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S V + A++ SL   + + G        DD  V++ LIDMY KCG    A  VF+ +  +
Sbjct: 292 SAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK 351

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VV W+ MI GY  +G   EA+ LY+++ Q  + P+  TF+ +L+AC ++ L + G   F
Sbjct: 352 DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF 411

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +   HGI P   HY+C+++LLGR+  +++A D I S+P KP   +W  LLS C +   
Sbjct: 412 HLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRK 470

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           ++ GE+AA  LF L+P N G Y+ LSN+YA+   W  VA++R  M  K + K   +S IE
Sbjct: 471 VRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIE 530

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           I+  +  F   DR+HP+++ I+EEL +L K+L+ AG+ P+ + VLHD   EE  +++C+H
Sbjct: 531 INGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHH 590

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SE+LA+AY +I    G T +RI KN+R C +CH  +K  S ++ R II+RD+ RFHHF  
Sbjct: 591 SERLAVAYGIISTAPGTT-LRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKD 649

Query: 688 GNCSCKDNW 696
           G CSC D W
Sbjct: 650 GVCSCGDFW 658



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 171/378 (45%), Gaps = 67/378 (17%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           +  F+ N L+  YAK G++ YAR +FDK+  R ++SW +++S + ++G         D M
Sbjct: 118 SNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNG---------DPM 168

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                 EAL VF  M++   +P     VS + A   + DL +GK
Sbjct: 169 ----------------------EALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK 206

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            IHG +    L     +  +LT MYAK G ++ AR+ F+RM   NL+ WN MISGY  NG
Sbjct: 207 SIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 266

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL----------------- 279
             ++ I LF+EM    +  D +T+ + + A  Q G ++ A  L                 
Sbjct: 267 YGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNT 326

Query: 280 ------------------FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                             F  + +KD V W+ MI+GY  +G  ++A+ L+NEM    V P
Sbjct: 327 GLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCP 386

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +  +   ++++C     +  G  +       G++      S ++D+  + G  + A+   
Sbjct: 387 NDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFI 446

Query: 382 NMMPTRNVVS-WNSMING 398
             MP +  VS W ++++ 
Sbjct: 447 MSMPIKPGVSVWGALLSA 464



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 140/284 (49%), Gaps = 17/284 (5%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           ++ ++ + GL+     +   + AC   G ++ A + F  + E D + W  +I GYTQ   
Sbjct: 6   VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 65

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            +  + ++ +M    V P+ F+   V+ +C   +    G+ +HG+    G   ++ V ++
Sbjct: 66  VDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNS 125

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MY K G    A  VF+ +  R VVSW S+I+GY QNG  +EAL ++ ++ Q N+KPD
Sbjct: 126 LVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPD 185

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL------DHYACMINLLGRSSDVD 477
               VSV++A  + +   +G+       ++HG+   L      D    +  +  +   V+
Sbjct: 186 WIALVSVMTAYTNVEDLGQGK-------SIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
            A      +  KPN ++W+ ++S  A  G   +GE A +   E+
Sbjct: 239 VARFFFNRM-EKPNLILWNAMISGYANNG---YGEEAIKLFREM 278



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 10/213 (4%)

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           H   V+ + +V G+     +    I+     G  + A   F  +   +++ WN++I GY 
Sbjct: 2   HLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYT 61

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPS 459
           Q       + +Y  +    + P+ FTF+ VL AC    +   G Q H  +    +G   +
Sbjct: 62  QKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFK--YGFGSN 119

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           +     ++++  +   +  A  +   L H    + W++++S     GD     M A ++F
Sbjct: 120 VFVQNSLVSMYAKFGQISYARIVFDKL-HDRTVVSWTSIISGYVQNGD----PMEALNVF 174

Query: 520 -ELEPINAGP-YIMLSNMYAACGRWEDVASIRS 550
            E+   N  P +I L ++  A    ED+   +S
Sbjct: 175 KEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS 207


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/679 (33%), Positives = 370/679 (54%), Gaps = 39/679 (5%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFD---KMPLRDIISWNALLSAHARSGSVQDLRAL 112
           P  ++    +L   A+ G L   R+L     K      I  NALL  +A+ G V     +
Sbjct: 264 PMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVMYAKYGRVDSALRV 323

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           F ++  +D +S+N+ ++ +    F  EA+  F  M +  F+P     VS  +A   L  L
Sbjct: 324 FGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRL 383

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
             G++ H   +   L  ++ V N L DMY K G I+ +  +F+ M  R+ +SW  +++ +
Sbjct: 384 NNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACF 443

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------ 268
            ++ +  + +++  E+Q  G+  D + + +IL  C                         
Sbjct: 444 AQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLDLI 503

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G  D +  LF  +++KD V WT+MI   T NG+   A+ LF EM   +
Sbjct: 504 LENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKAN 563

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           ++PD  ++ S++ + A L+SL  G+ VHG  +      +  V S+L+DMY  CG  + A 
Sbjct: 564 IQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAI 623

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VF     ++VV W +MIN    +G   +A+ L+ ++LQ  L PD  +F+++L AC H+ 
Sbjct: 624 RVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSK 683

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L E G+++ D + + + + P  +HYAC++++LGRS   ++A + IK++P  P S +W  L
Sbjct: 684 LVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCAL 743

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C +  +     +AA  L ELEP N G YI++SN++A  G+W +    R+ M  + ++
Sbjct: 744 LGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLR 803

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKLVLHDTQE 617
           K  A SWIEI N +H F S D  H ++E I+ +LS++ + L +E G+  +T+ VLHDT E
Sbjct: 804 KNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSE 863

Query: 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
           EEK+  +  HSE++A+A+ LI    G+ PIRI KN+RVCGDCH F K  S +  R I++R
Sbjct: 864 EEKIDMLHKHSERIAIAFGLISTRPGM-PIRIAKNLRVCGDCHEFTKLVSKLFERDIVVR 922

Query: 678 DSNRFHHFVGGNCSCKDNW 696
           D+NRFHHF GG+CSC+D W
Sbjct: 923 DANRFHHFSGGSCSCEDFW 941



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 165/601 (27%), Positives = 263/601 (43%), Gaps = 96/601 (15%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDL----NFYEPNTTFLH 62
           LRQA+  L +R   A E  +   VLD           R Q H       +  E +  FL 
Sbjct: 42  LRQALRQLTTRAPPARE--HYGWVLDLVAARRAAAEGR-QVHAHAVTTGSLNEDDDGFLA 98

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
            +L+  Y + G++  AR LF+ MP R + SWNAL+ A+  SGS  +   ++  M  R S 
Sbjct: 99  TKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAM--RASA 156

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           +  +A                          P   T  S L AC    D R G ++HG  
Sbjct: 157 APGSA--------------------------PDGCTLASVLKACGAEGDGRCGGEVHGLA 190

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKNGQPKK 240
           V   L  +  V NAL  MYAK G +D A  +F+  + + R++ SWN ++SG ++NG+  +
Sbjct: 191 VKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLE 250

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------ 270
            + LF+ MQ  G   +  T   +L  C +                               
Sbjct: 251 ALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLVM 310

Query: 271 ----GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
               GR+D A R+F  I EKD + W +M+  Y QN    +A+  F EML    +PD   +
Sbjct: 311 YAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACV 370

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            S+ S+   L+ L +G+  H  A+   +  DL V + L+DMY KCG  + +  VF  M  
Sbjct: 371 VSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGI 430

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R+ +SW +++  +AQ+ +  EAL +  +L +E +  DS    S+L  C        G   
Sbjct: 431 RDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC-------GLKS 483

Query: 447 FDSISAVH--GITPSLDHYAC---MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
              +  VH   I   L        +I++ G   + D +++L + +  K + + W+++++ 
Sbjct: 484 ISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRV-EKKDIVSWTSMINC 542

Query: 502 CAMKGDIKHGEMAARHLF-ELEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           C   G +      A  LF E++  N  P  + L ++  A      +A + S  K K V  
Sbjct: 543 CTNNGRLN----GAVFLFTEMQKANIQPDSVALVSILVA------IAGLSSLTKGKQVHG 592

Query: 560 F 560
           F
Sbjct: 593 F 593



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 226/465 (48%), Gaps = 58/465 (12%)

Query: 94  NALLSAHARSGSVQDLRALFD--KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           NAL+  +A+ G +     +F+  +   RD  S+N+ ++G    G + EAL +F  MQ   
Sbjct: 203 NALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAG 262

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR-NALTDMYAKGGEIDKA 210
           F    YT V+ L  CA+L  L  G+++H  ++    G  + ++ NAL  MYAK G +D A
Sbjct: 263 FPMNSYTSVAVLQVCAELGLLSLGRELHAALL--KCGSELNIQCNALLVMYAKYGRVDSA 320

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE---VTVSNILGAC 267
             +F ++  ++ +SWN M+S Y++N    + ID F EM   G  PD    V++S+ LG  
Sbjct: 321 LRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHL 380

Query: 268 --------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G I+ + ++F  +  +D++ WTT++
Sbjct: 381 SRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTIL 440

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             + Q+ +  +AL +  E+  E +  D   I S++ +C  L S+   + VH  A+  G+ 
Sbjct: 441 ACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL- 499

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            DL++ + LID+Y +CG  D +  +F  +  +++VSW SMIN    NG+   A+ L+ ++
Sbjct: 500 LDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEM 559

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH------YACMINL 469
            + N++PDS   VS+L A        +G+        VHG     +        + ++++
Sbjct: 560 QKANIQPDSVALVSILVAIAGLSSLTKGKQ-------VHGFLIRRNFPIEGPVVSSLVDM 612

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
                 ++ A+ + +    K + ++W+ +++   M G   HG+ A
Sbjct: 613 YSGCGSMNYAIRVFERAKCK-DVVLWTAMINATGMHG---HGKQA 653



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 113/463 (24%), Positives = 206/463 (44%), Gaps = 55/463 (11%)

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG-K 181
           S + ++     +G  R+AL    R    R  P    +   L+  A       G+Q+H   
Sbjct: 28  SASASLKRLCKEGDLRQAL----RQLTTRAPPAREHYGWVLDLVAARRAAAEGRQVHAHA 83

Query: 182 IVVGNLG--GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           +  G+L    + F+   L  MY + G +D AR LF+ M  R + SWN ++  YL +G   
Sbjct: 84  VTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAG 143

Query: 240 KCIDLFQEMQ---LLGLNPDEVTVSNILGAC----------------------------- 267
           + + ++  M+     G  PD  T++++L AC                             
Sbjct: 144 EAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVAN 203

Query: 268 ------FQTGRIDDAGRLFHVIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                  + G +D A R+F  +++  +D   W +++ G  QNG+  +AL LF  M S   
Sbjct: 204 ALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGF 263

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
             + ++  +V+  CA+L  L  G+ +H   +  G + ++   +AL+ MY K G  D A  
Sbjct: 264 PMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQC-NALLVMYAKYGRVDSALR 322

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF  +  ++ +SWNSM++ Y QN    EA+  + ++LQ   +PD    VS+ SA  H   
Sbjct: 323 VFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSR 382

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
              G+  F + +    +   L     ++++  +   ++ +  + +S+  + + + W+T+L
Sbjct: 383 LNNGRE-FHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIR-DHISWTTIL 440

Query: 500 SVCAMKGDIKHGEMAARHLFEL--EPINAGPYIMLSNMYAACG 540
           +  A     +H E A   + EL  E I     ++ S +   CG
Sbjct: 441 ACFAQSS--RHSE-ALEMILELQKEGIMVDSMMIGSILETCCG 480


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 342/591 (57%), Gaps = 40/591 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R LF ++   +  ++   I  +A +G   +AL  +S M+K R  P  +T  +  +ACA +
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 170 LDLRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
                G Q+H + +++G    +++V NA+ DMY K G +  AR +FD M  R+++SW  +
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           I  Y + G  +   DLF  + +                                   KD 
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPV-----------------------------------KDM 207

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH-- 346
           V WT M+ GY QN    DAL +F  +  E V  D+ ++  V+S+CA+L +  +   +   
Sbjct: 208 VTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDI 267

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
            ++   GV D++LV SALIDMY KCG  ++A+ VF  M  RNV S++SMI G+A +G+  
Sbjct: 268 AESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRAR 327

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
            A+ L+  +L+  +KP+  TFV VL+AC HA L ++GQ  F S+   +G+ P+ + YACM
Sbjct: 328 AAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACM 387

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
            +LL R+  ++KA+ L++++P + +  +W  LL    + G+    E+A++ LFELEP N 
Sbjct: 388 TDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNI 447

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK-VHKFVSEDRTHPET 585
           G Y++LSN YA+ GRW+DV+ +R  ++ KN+KK   +SW+E  N  +HKFV+ D +HP+ 
Sbjct: 448 GNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKI 507

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             I +EL+ L+++L+  G+ PN   + +   + EK   +  HSEKLALA+ L+    G T
Sbjct: 508 NEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGST 567

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I+IMKN+R+C DCH+ M  AS + GR I++RD+ RFHHF+ G CSC + W
Sbjct: 568 -IKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 154/299 (51%), Gaps = 7/299 (2%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ L   C  V    L  +L +   L     +  +++N ++  Y K G L  AR +FD+M
Sbjct: 112 FSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEM 171

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P RD+ISW  L+ A+ R G ++  R LFD +P++D V++   + G+A      +AL+VF 
Sbjct: 172 PERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFR 231

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH--GKIVVGNLGGNVFVRNALTDMYAK 203
           R++ +  E  + T V  ++ACAQL   +    I    +     +G NV V +AL DMY+K
Sbjct: 232 RLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSK 291

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +++A  +F  M  RN+ S++ MI G+  +G+ +  I LF +M   G+ P+ VT   +
Sbjct: 292 CGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGV 351

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG-----YTQNGKEEDALILFNEMLSE 317
           L AC   G +D   +LF  +++   V  T  +        ++ G  E AL L   M  E
Sbjct: 352 LTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPME 410



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/427 (21%), Positives = 174/427 (40%), Gaps = 104/427 (24%)

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           Y R LF ++   +  +W AL+ A+A  G +                              
Sbjct: 61  YPRLLFSQLHTPNPFAWTALIRAYALRGPLS----------------------------- 91

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK-IVVGNLGGNVFVRN 195
             +AL  +S M+K R  P  +T  +  +ACA +     G Q+H + +++G    +++V N
Sbjct: 92  --QALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNN 149

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVS------------------------------- 224
           A+ DMY K G +  AR +FD M  R+++S                               
Sbjct: 150 AVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVT 209

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ--------------- 269
           W  M++GY +N  P   +++F+ ++  G+  DEVT+  ++ AC Q               
Sbjct: 210 WTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAE 269

Query: 270 ----------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                  G +++A  +F  ++E++   +++MIVG+  +G+   A
Sbjct: 270 SSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAA 329

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK-AVVLGVDDDLLVSSALID 366
           + LF +ML   V+P+  +   V+++C+    +  GQ +        GV     + + + D
Sbjct: 330 IKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTD 389

Query: 367 MYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           +  + G  + A  +   MP   +   W +++     +G    A     +L +  L+PD+ 
Sbjct: 390 LLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFE--LEPDNI 447

Query: 426 TFVSVLS 432
               +LS
Sbjct: 448 GNYLLLS 454


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/639 (34%), Positives = 370/639 (57%), Gaps = 39/639 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L + +A  G +   + +FD++ +++S  +N+ I G+A       AL ++ +M     +P 
Sbjct: 64  LAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPD 123

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           ++T+   L AC  LL    G+++H  +VVG L  +V+V N++  MY K G+++ AR +FD
Sbjct: 124 NFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFD 183

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------- 268
           RM  R+L SWN M+SG++KNG+ +   ++F +M+  G   D  T+  +L AC        
Sbjct: 184 RMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKV 243

Query: 269 ------------QTGRIDD-------------------AGRLFHVIKEKDNVCWTTMIVG 297
                       ++GR+ +                   A +LF  ++ KD V W ++I G
Sbjct: 244 GKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISG 303

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y + G    AL LF  M+     PD+ ++ SV+++C ++++L  G  V    V  G   +
Sbjct: 304 YEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVN 363

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           ++V +ALI MY  CG    A  VF+ MP +N+ +   M+ G+  +G+  EA++++ ++L 
Sbjct: 364 VVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLG 423

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + + PD   F +VLSAC H+ L + G+  F  ++  + + P   HY+C+++LLGR+  +D
Sbjct: 424 KGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLD 483

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A  +I+++  KPN  +W+ LLS C +  ++K   ++A+ LFEL P     Y+ LSN+YA
Sbjct: 484 EAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYA 543

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  RWEDV ++R+ +  + ++K  +YS++E++  VH+F   D +H +++ IY +L  L +
Sbjct: 544 AERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNE 603

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           +L++AG+ P+T LVL+D +EE K K +  HSE+LALA+ LI    G T IRI KN+RVCG
Sbjct: 604 QLKKAGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTT-IRITKNLRVCG 662

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S +  R II+RD  RFHHF  G CSC   W
Sbjct: 663 DCHTVIKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 363/641 (56%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G +   R +FD+MP RD +S+N  I+G+       E L++F  M+
Sbjct: 229 DVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMR 288

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T  S ++AC  L D R G+++HG ++       V V N+L  M++  G  D
Sbjct: 289 EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWD 348

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F +M  ++LVSW  MISGY KNG P+K ++ +  M+  G+ PDE+T++++L AC 
Sbjct: 349 EAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACA 408

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    ID A  +FH I  K+ + WT+
Sbjct: 409 GLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTS 468

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I+G   N +  +AL  F +M+   ++P+  ++ SV+S+CA++ +L  G+ +H  A+  G
Sbjct: 469 IILGLRLNYRSFEALFFFQQMIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D  + +AL+DMY +CG  + AW  FN    ++V SWN ++ GYAQ G+   A+ L+ 
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFH 586

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+++ ++ PD  TF S+L AC  + +   G  +F+S+     I P+L HYA +++LLGR+
Sbjct: 587 KMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRA 646

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             ++ A + IK +P  P+  IW  LL+ C +  +++ GE+AA+H+FE++  + G YI+L 
Sbjct: 647 GRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLC 706

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G+W++VA +R  M+   +      SW+E+  +VH F++ D  HP+ + I   L 
Sbjct: 707 NLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDFHPQIKEINAVLE 766

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
              +K++  G S  +K    D  +  K +  C HSE+LA+A+ LI    G TPI + KN+
Sbjct: 767 GFYEKMEATGLS-MSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVPG-TPIWVTKNL 824

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C +CH  +KF S ++ R I +RD+ +FHHF  G CSC D
Sbjct: 825 YMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 220/509 (43%), Gaps = 80/509 (15%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-- 182
           N+ I     KG   +AL     MQ+ +    + T+++ L  C        G ++H  +  
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            V  LG  V + NAL  M+ + G++ +A ++F +M  R+L SWN+++ GY K G   + +
Sbjct: 123 TVTRLG--VRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEAL 180

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
           +L+  M  +G+ PD  T   +L  C                                   
Sbjct: 181 NLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMY 240

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G I  A  +F  +  +D + W  MI GY +N    + L LF  M    V PD  +++
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+S+C  L     G+ VHG  +  G   ++ V+++LI M+   G  D+A  VF+ M  +
Sbjct: 301 SVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFK 360

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           ++VSW +MI+GY +NG   +A+  Y  +  E + PD  T  SVLSAC    L ++G    
Sbjct: 361 DLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGI-ML 419

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH------------------- 488
              +   G+T  +     +I++  +   +DKA+++   +P+                   
Sbjct: 420 HEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRS 479

Query: 489 --------------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG--PYIML 532
                         KPNS+   ++LS CA  G +  G+    H         G  P  +L
Sbjct: 480 FEALFFFQQMILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALL 539

Query: 533 SNMYAACGR----WEDVASIRSSMKSKNV 557
            +MY  CGR    W    S    + S N+
Sbjct: 540 -DMYVRCGRMEPAWNQFNSCEKDVASWNI 567


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/666 (34%), Positives = 356/666 (53%), Gaps = 41/666 (6%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTA 127
           +  +G+L +   +   + L++I++ +AL+S + R GS++D  ALF  +    D V +N  
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVA-SALVSMYGRCGSLRDANALFGHLERHLDVVLWNAM 201

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG--KQIHGKIVVG 185
           I   +  G  REAL++F RM +    P   T VS   AC+    LR    K  H  +   
Sbjct: 202 ITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDET 261

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            LG +V V  AL + YA+ GEID AR  F  M  RN VSW  MI+ + + G     ++ F
Sbjct: 262 GLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLA-VETF 320

Query: 246 QEMQLLGLNPDEVTVSNILGAC--FQTGRI------------------------------ 273
             M L G+ P   T+   L  C    T R+                              
Sbjct: 321 HAMLLEGVVPTRSTLFAALEGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQ 380

Query: 274 DDAGRLFHVIKEK--DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           +DA R+F   +E   D    T MI  Y Q         L+   +   + PD+    + + 
Sbjct: 381 EDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALD 440

Query: 332 SCAKLASLYHGQVVHG-KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +CA LA+L  G+ +H   A    +D D+ + +A++ MY +CG   DA   F+ MP R+ +
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI 500

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+M++  AQ+G+  +   L+  +LQE    +   F+++LSAC HA L E G  HF ++
Sbjct: 501 SWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAM 560

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           +  HG+ P+ +HY CM++LLGR   +  A  +++++P  P++  W  L+  C + GD + 
Sbjct: 561 TGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTER 620

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           G  AA  + EL   +   Y+ L N+Y+A GRWED A++R  M    ++K    S IEI +
Sbjct: 621 GRFAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRS 680

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           KVH+FV  DR+HP++E IY EL +++  ++ AG+   T  VLHD +EE+K + + +HSEK
Sbjct: 681 KVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEK 740

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ ++  P G T +R++KN+RVC DCH   KF S + GR I++RD  RFHHF  G C
Sbjct: 741 LAIAFGMMSTPQGST-LRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGAC 799

Query: 691 SCKDNW 696
           SC D W
Sbjct: 800 SCGDYW 805



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 126/528 (23%), Positives = 219/528 (41%), Gaps = 85/528 (16%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A  +LV +C   N +   K L S +  +       +L + L++ Y + G L  A D+F K
Sbjct: 31  AAVRLVREC---NSIARGKLLHSKISSSQSLSRDGYLASSLVYMYLRCGSLESAIDVFHK 87

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  + I+ W  L+SA                               + ++G S  A+ +F
Sbjct: 88  IAHKSIVLWTVLISA-------------------------------YVSRGHSAAAIALF 116

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            R+ ++         VS L+AC+    L  G+ IH   V   LG    V +AL  MY + 
Sbjct: 117 HRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRC 176

Query: 205 GEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G +  A  LF  +    ++V WN MI+   +NG P++ +++F  M  LG+ PD VT  ++
Sbjct: 177 GSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSV 236

Query: 264 LGAC-------------FQT------------------------GRIDDAGRLFHVIKEK 286
             AC             F T                        G ID A   F  + E+
Sbjct: 237 FKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPER 296

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           + V WT+MI  + Q G    A+  F+ ML E V P + ++ + +  C     L+  ++V 
Sbjct: 297 NAVSWTSMIAAFAQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGCED---LHTARLVE 352

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN-----SMINGYAQ 401
             A  +GV  D+ + + L+  Y +C   +DA  VF+    R    W+     +MI  YAQ
Sbjct: 353 AIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFS---AREEGEWDAALVTAMIAVYAQ 409

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
                    L+   ++  + PD   +++ L AC        G+     ++A   +   + 
Sbjct: 410 CRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVT 469

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
               ++++ G+   +  A D    +P + + + W+ +LS  A  G ++
Sbjct: 470 LGNAIVSMYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 145/300 (48%), Gaps = 17/300 (5%)

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           D    S+++    + G ++ A  +FH I  K  V WT +I  Y   G    A+ LF+ +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E +  D     SV+S+C+    L  G+++H  AV  G+    +V+SAL+ MY +CG   
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 376 DAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           DA  +F  +    +VV WN+MI   +QNG   EAL ++ ++LQ  + PD  TFVSV  AC
Sbjct: 181 DANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKAC 240

Query: 435 LHADLFERGQ-NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
             +      Q   F +     G+   +     ++N   R  ++D A +   ++P + N++
Sbjct: 241 SSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPER-NAV 299

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGRWEDVASIR 549
            W+++++  A  G          HL  +E  +A    G     S ++AA    ED+ + R
Sbjct: 300 SWTSMIAAFAQIG----------HLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLHTAR 349



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD----LRALFDKM 116
           L N ++  Y + G L  ARD FD MP RD ISWNA+LSA A+ G V+D     RA+  + 
Sbjct: 470 LGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEG 529

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
              + V++   ++  A+ G      + FS M  D
Sbjct: 530 FDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGD 563


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/652 (34%), Positives = 368/652 (56%), Gaps = 50/652 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G +   + L      RD V++NT ++         EAL+    M  +  E
Sbjct: 236 NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVE 295

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P  +T  S L AC+ L  LR GK++H   +  G+L  N FV +AL DMY    ++     
Sbjct: 296 PDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCR 355

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGACFQTG 271
           +FD M +R +  WN MI+GY +N   ++ + LF EM+   GL  +  T++ ++ AC ++G
Sbjct: 356 VFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415

Query: 272 -----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIV 296
                                              +ID A R+F  ++++D V W T+I 
Sbjct: 416 AFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIIT 475

Query: 297 GYTQNGKEEDALILFNEM------LSE-----DVRPDKFSISSVVSSCAKLASLYHGQVV 345
           GY  + + EDAL++ ++M       SE      ++P+  ++ +++ SCA L++L  G+ +
Sbjct: 476 GYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEI 535

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  A+   +  D+ V SAL+DMY KCG    +  VF+ +P RNV++WN ++  Y  +G  
Sbjct: 536 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNS 595

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            +A+ +   ++ + +KP+  TF+SV +AC H+ +   G   F ++   +G+ PS DHYAC
Sbjct: 596 QDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYAC 655

Query: 466 MINLLGRSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           +++LLGR+  V +A  LI  +P     +  WS+LL  C +  +++ GE+AA++L +LEP 
Sbjct: 656 VVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPN 715

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
            A  Y++L+N+Y++ G W     +R +MK++ V+K    SWIE  ++VHKFV+ D +HP+
Sbjct: 716 VASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 775

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +E +   L  L +++++ G+ P+T  VLH+ +E+EK   +C HSEKLA+A+ ++    G 
Sbjct: 776 SEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG- 834

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IR+ KN+RVC DCHL  KF S ++ R IILRD  RFHHF  G CSC D W
Sbjct: 835 TIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 135/556 (24%), Positives = 252/556 (45%), Gaps = 90/556 (16%)

Query: 7   LRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           LR+A+ T   +   G      A+  L+     + D++L K++ +H+    Y  ++  + N
Sbjct: 74  LREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVAN 133

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L++ Y K G       +FD++  R+ +SWN+L+S+             F+K  +     
Sbjct: 134 TLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCS----------FEKWEM----- 178

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHG 180
                           AL+ F  M  +  EP+ +T VS   AC+       L  GKQ+H 
Sbjct: 179 ----------------ALEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHA 222

Query: 181 -KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +  G L  N F+ N L  MY K G++  ++ L      R+LV+WN ++S   +N Q  
Sbjct: 223 YGLRKGEL--NSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFL 280

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTGRIDD-------- 275
           + ++  +EM L G+ PD  T+S++L AC                 + G +D+        
Sbjct: 281 EALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSAL 340

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPD 322
                         R+F  + ++    W  MI GY QN  +E+AL+LF EM  S  +  +
Sbjct: 341 VDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLAN 400

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             +++ VV +C +  +    + +HG  V  G+D D  V +AL+DMY + G  D A  +F 
Sbjct: 401 STTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFG 460

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL-----------QENLKPDSFTFVSVL 431
            M  R++V+WN++I GY  + +  +AL +  K+            + +LKP+S T +++L
Sbjct: 461 KMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTIL 520

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            +C       +G+    + +  + +   +   + ++++  +   +  +  +   +P + N
Sbjct: 521 PSCAALSALAKGK-EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-N 578

Query: 492 SLIWSTLLSVCAMKGD 507
            + W+ ++    M G+
Sbjct: 579 VITWNVIVMAYGMHGN 594



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 126/230 (54%), Gaps = 20/230 (8%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  Y++ GK+  A+ +F KM  RD+++WN +++ +  S   +D   +  KM I 
Sbjct: 437 FVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQI- 495

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                             R+A +  SR+     +P   T ++ L +CA L  L +GK+IH
Sbjct: 496 ----------------LERKASERASRVS---LKPNSITLMTILPSCAALSALAKGKEIH 536

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              +  NL  +V V +AL DMYAK G +  +R +FD++  RN+++WN+++  Y  +G  +
Sbjct: 537 AYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQ 596

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
             ID+ + M + G+ P+EVT  ++  AC  +G +++  ++F+ +K+   V
Sbjct: 597 DAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGV 646



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 78/145 (53%), Gaps = 1/145 (0%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  ++    ++    +A++ + +M+   ++PD F+  +++ + A L  +  G+ +H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 351 VLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
             G   D + V++ L+++Y KCG     + VF+ +  RN VSWNS+I+      +   AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
             +  +L E+++P SFT VSV  AC
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALAC 205


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/652 (34%), Positives = 366/652 (56%), Gaps = 50/652 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G +   + L      RD V++NT ++         EAL+    M  +  E
Sbjct: 153 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 212

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P ++T  S L AC+ L  LR GK++H   +  G+L  N FV +AL DMY    ++   R 
Sbjct: 213 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 272

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGACFQTG 271
           +FD M +R +  WN MI+GY +N   K+ + LF  M+   GL  +  T++ ++ AC ++G
Sbjct: 273 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 332

Query: 272 -----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIV 296
                                              +ID A R+F  ++++D V W TMI 
Sbjct: 333 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMIT 392

Query: 297 GYTQNGKEEDALILFNEMLSED-----------VRPDKFSISSVVSSCAKLASLYHGQVV 345
           GY  +   EDAL+L ++M + +           ++P+  ++ +++ SCA L++L  G+ +
Sbjct: 393 GYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEI 452

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  A+   +  D+ V SAL+DMY KCG    +  VF+ +P +NV++WN +I  Y  +G  
Sbjct: 453 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 512

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EA+ L   ++ + +KP+  TF+SV +AC H+ + + G   F  +   +G+ PS DHYAC
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYAC 572

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           +++LLGR+  + +A  L+  +P   N    WS+LL    +  +++ GE+AA++L +LEP 
Sbjct: 573 VVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN 632

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
            A  Y++L+N+Y++ G W+    +R +MK + V+K    SWIE  ++VHKFV+ D +HP+
Sbjct: 633 VASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQ 692

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           +E +   L  L +++++ G+ P+T  VLH+ +E+EK   +C HSEKLA+A+ ++    G 
Sbjct: 693 SEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPG- 751

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           T IR+ KN+RVC DCHL  KF S I+ R IILRD  RFH F  G CSC D W
Sbjct: 752 TIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/535 (24%), Positives = 243/535 (45%), Gaps = 87/535 (16%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A+  L+     + D+EL K++ +H+    Y  ++  + N L++ Y K G           
Sbjct: 12  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDF--------- 62

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
                              G+V  +   FD++  R+ VS+N+ I+   +      AL+ F
Sbjct: 63  -------------------GAVYKV---FDRISERNQVSWNSLISSLCSFEKWEMALEAF 100

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHG-KIVVGNLGGNVFVRNALTDM 200
             M  +  EP+ +T VS + AC+ L     L  GKQ+H   +  G L  N F+ N L  M
Sbjct: 101 RCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGEL--NSFIINTLVAM 158

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G++  ++ L      R+LV+WN ++S   +N Q  + ++  +EM L G+ PDE T+
Sbjct: 159 YGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTI 218

Query: 261 SNILGAC----------------FQTGRIDD--------------------AGRLFHVIK 284
           S++L AC                 + G +D+                      R+F  + 
Sbjct: 219 SSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMF 278

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           ++    W  MI GY+QN  +++AL+LF  M  S  +  +  +++ VV +C +  +    +
Sbjct: 279 DRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKE 338

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +HG  V  G+D D  V + L+DMY + G  D A  +F  M  R++V+WN+MI GY  + 
Sbjct: 339 AIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSE 398

Query: 404 QDLEALALYDKLL-----------QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
              +AL L  K+            + +LKP+S T +++L +C       +G+    + + 
Sbjct: 399 HHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK-EIHAYAI 457

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
            + +   +   + ++++  +   +  +  +   +P K N + W+ ++    M G+
Sbjct: 458 KNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK-NVITWNVIIMAYGMHGN 511



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/395 (27%), Positives = 184/395 (46%), Gaps = 54/395 (13%)

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKA 210
            +P +Y   + L A A L D+  GKQIH  +     G  +V V N L ++Y K G+    
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-- 268
             +FDR++ RN VSWN +IS      + +  ++ F+ M    + P   T+ +++ AC   
Sbjct: 66  YKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNL 125

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G++  +  L      +D V W T
Sbjct: 126 PMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNT 185

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++    QN +  +AL    EM+ E V PD+F+ISSV+ +C+ L  L  G+ +H  A+  G
Sbjct: 186 VLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 354 -VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            +D++  V SAL+DMYC C        VF+ M  R +  WN+MI GY+QN  D EAL L+
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 413 DKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG--ITPSLDH----YAC 465
             + +   L  +S T   V+ AC+ +  F R +       A+HG  +   LD        
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKE-------AIHGFVVKRGLDRDRFVQNT 358

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++++  R   +D A+ +   +  + + + W+T+++
Sbjct: 359 LMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMIT 392



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 22/226 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-I 118
           F+ N L+  Y++ GK+  A  +F KM  RD+++WN +++ +  S   +D   L  KM  +
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 413

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
              VS          KG SR +L+           P   T ++ L +CA L  L +GK+I
Sbjct: 414 ERKVS----------KGASRVSLK-----------PNSITLMTILPSCAALSALAKGKEI 452

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +  NL  +V V +AL DMYAK G +  +R +FD++  +N+++WN++I  Y  +G  
Sbjct: 453 HAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNG 512

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           ++ IDL + M + G+ P+EVT  ++  AC  +G +D+  R+F+V+K
Sbjct: 513 QEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMK 558



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 1/122 (0%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCG 372
           M+   ++PD ++  +++ + A L  +  G+ +H      G   D + V++ L+++Y KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
                + VF+ +  RN VSWNS+I+      +   AL  +  +L EN++P SFT VSV++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 433 AC 434
           AC
Sbjct: 121 AC 122



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----D 120
           L+  YAK G L  +R +FD++P +++I+WN ++ A+   G+ Q+   L   M ++    +
Sbjct: 471 LVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPN 530

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPT 155
            V++ +  A  ++ G   E L++F  M+ D   EP+
Sbjct: 531 EVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPS 566


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/701 (33%), Positives = 371/701 (52%), Gaps = 69/701 (9%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R  D+ L + L + + L+     +TFL N L+  Y+    +  A  LFD MP  +++S
Sbjct: 27  CGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVS 86

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W  L+S                               G       R+AL  FS M +   
Sbjct: 87  WTTLVS-------------------------------GLTQNSMHRDALAAFSSMCRAGL 115

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            PT +   SA  A A L     G Q+H   V       +FV + L DMY+K G + +A  
Sbjct: 116 VPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACR 175

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN------------------ 254
           +FD+M  ++ V+W  MI GY KNG  +  +  F++M+  GL                   
Sbjct: 176 VFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLK 235

Query: 255 -----------------PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVC-WTTMI 295
                              EV V N L   + +   +D+A R+  + +   NV   T++I
Sbjct: 236 DGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLI 295

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY +    E AL++F E+  + V P++F+ SS++  CA  A L  G  +H + +   + 
Sbjct: 296 DGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLI 355

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D  VSS L+DMY KCG+   +  +F  +     ++WN+ IN  AQ+G   EA+  +D++
Sbjct: 356 SDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRM 415

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
               ++P+  TFVS+L+AC HA L + G  +F S+   HGI P  +HY+C+I++ GR+  
Sbjct: 416 TSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDMYGRAGR 475

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A   I  +P KPN+  W +LL  C M+G+ + GE+AA ++ +LEP N G ++ LS +
Sbjct: 476 LDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVHVSLSGI 535

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YA+ G+WEDV ++R  M+   +KK   +SW++ + K H F SED +HP+ E IYE+L +L
Sbjct: 536 YASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIYEKLEEL 595

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
            ++++E G+ P+T+ +  + ++  K + + YHSE++A+A+ LI  P    PI + KN+R+
Sbjct: 596 YERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMP-ATKPIIVKKNLRI 654

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH  +KF S +  R II+RD++RFHHFV G CSC D W
Sbjct: 655 CADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/672 (33%), Positives = 371/672 (55%), Gaps = 77/672 (11%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L+ +++  Y ++ +L  A  LFD+M +RD++SWN+++      G++     LFD+MP ++
Sbjct: 45  LYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKN 104

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
            +S+ T + G+   G    A ++F  M  KD         V+A NA            +H
Sbjct: 105 VISWTTMVNGYLKFGRVELAQRLFLDMHVKD---------VAAWNA-----------MVH 144

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G                    Y + G +++   LF+ M  R+++SW  MI G   NG+ +
Sbjct: 145 G--------------------YFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSE 184

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTG----------------------- 271
           + + +F++M   G+ P   T + +L AC     F  G                       
Sbjct: 185 EALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLI 244

Query: 272 -------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                  +I+ A ++F+    K+ V WT ++  Y  N K +DAL +F +M      P++ 
Sbjct: 245 TFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQS 304

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + S  + +C  L +L  G+ +H  A+ LG++ D+ V ++L+ MY +CG  + A  VF  +
Sbjct: 305 TFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNI 364

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             +++VSWNS+I G AQ+G  L AL  ++++++  + P+  TF  +LSAC  + +  +G+
Sbjct: 365 NEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGR 424

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             F+ IS          HYACM+++LGR   +D+A +L++ +P K NS+IW  LLS C +
Sbjct: 425 CFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRV 484

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             +++  E AA+H+ +LEP  +  Y++LSN+YA+ GRW DV+ +R  MK   + K    S
Sbjct: 485 HSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSS 544

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           W+ +  K H+F+S DR+HP +E IYE+L  L KKL+E G+ P+ K  LHD ++E+K + +
Sbjct: 545 WVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEML 604

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            +HSE+LA+A+ L+    G T I +MKN+RVCGDCH  +K  S I+GR I++RDS RFHH
Sbjct: 605 SFHSERLAIAFGLVSTVEGST-ITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHH 663

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 664 FKNGICSCSDYW 675



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 199/423 (47%), Gaps = 53/423 (12%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L+ R       ++  ++  C    ++ +A RL   M        TT ++      Y K G
Sbjct: 65  LFDRMSVRDVVSWNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNG-----YLKFG 119

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           ++  A+ LF  M ++D+ +WNA++  +  +G V++   LF++MP+RD +S+ + I G   
Sbjct: 120 RVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDL 179

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G S EAL VF +M +   EPT  T    L+ACA  ++   G Q+HG +V      + F+
Sbjct: 180 NGKSEEALFVFKKMLRSGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFI 239

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             +L   YA   +I+ A  +F+    +N+V W  +++ Y+ N + +  + +F +M  +G 
Sbjct: 240 SVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGA 299

Query: 254 NPDEVTVSNILGAC-----------------------------------FQTGRIDDAGR 278
            P++ T S  L AC                                    + G ++ A  
Sbjct: 300 LPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVA 359

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  I EKD V W ++IVG  Q+G    ALI FN+M+   V P++ + + ++S+C++   
Sbjct: 360 VFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGM 419

Query: 339 LYHGQ-----VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           L  G+     +   K+ VL         + ++D+  +CG  D+A  +   MP +     N
Sbjct: 420 LLKGRCFFEYISRYKSNVLRPQH----YACMVDILGRCGKLDEAEELVRYMPVKA----N 471

Query: 394 SMI 396
           SMI
Sbjct: 472 SMI 474


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 353/644 (54%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R+    ++L+ A++  G+V   R +FD +  +D+V++   ++ ++      +AL  FS+M
Sbjct: 183 RNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKM 242

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +    +P  +   S L A   L     GK IHG  V         V  AL DMYAK G I
Sbjct: 243 RMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYI 302

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR +F+ + + +++ W+ +IS Y ++ Q ++  ++F  M    + P+E ++S +L AC
Sbjct: 303 EDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQAC 362

Query: 268 FQTGRID-----------------------------------DAGRLFHVIKEKDNVCWT 292
                +D                                   ++  +F  +++ + V W 
Sbjct: 363 ANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWN 422

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+IVGY Q+G  EDAL +F EM +  V   + + SSV+ +CA  AS+ H   +H      
Sbjct: 423 TIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKS 482

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
             ++D +V ++LID Y KCG   DA  VF  +   +VVSWN++I+GYA +G+  +AL L+
Sbjct: 483 TFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELF 542

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           +++ + + KP+  TFV++LS C    L  +G + F+S++  H I PS+DHY C++ LLGR
Sbjct: 543 NRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGR 602

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  ++ A+  I  +P  P+ ++W  LLS C +  ++  G+ +A  + E+EP +   Y++L
Sbjct: 603 AGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLL 662

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYAA G  + VA +R SM++  VKK    SW+EI  +VH F      HP+  II   L
Sbjct: 663 SNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAML 722

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L  K    G+ P+  +VLHD  EEEK + +  HSE+LALAY L   P G  PIRIMKN
Sbjct: 723 EWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG-HPIRIMKN 781

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R C DCH   K  S I+ R I++RD NRFHHF  G CSC D W
Sbjct: 782 LRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 210/440 (47%), Gaps = 65/440 (14%)

Query: 165 ACAQLL-------DLRRGKQIHGKIVVGNLGG----NVFVRNALTDMYAKGGEIDKARWL 213
           ACA+LL       D R G+ +H ++V    GG    + F  N L ++YAK G +  AR L
Sbjct: 49  ACARLLQRCIARGDARAGRAVHARVV--QRGGVAQLDTFCANVLLNLYAKLGPLAAARRL 106

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--------- 264
           FD M  RN+VS+  ++ GY   G  ++   LF+ +Q  G   +   ++ IL         
Sbjct: 107 FDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAP 166

Query: 265 --GACFQT------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
               C                           G +  A  +F  I  KD V WT M+  Y
Sbjct: 167 GLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCY 226

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           ++N   EDAL  F++M     +P+ F ++SV+ +   L+S   G+ +HG AV    D + 
Sbjct: 227 SENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEP 286

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V  AL+DMY KCG  +DA TVF ++P  +V+ W+ +I+ YAQ+ Q+ +A  ++ ++++ 
Sbjct: 287 HVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRS 346

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           ++ P+ F+   VL AC +    + GQ   + +  + G    L     ++++  +  +++ 
Sbjct: 347 SVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKL-GYESELFVGNALMDVYAKCRNMEN 405

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLS 533
           ++++ +SL    N + W+T++      G  +       EM A H+   +       +  S
Sbjct: 406 SLEIFRSL-RDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQ-------VTFS 457

Query: 534 NMYAACGRWEDVASIRSSMK 553
           ++  AC    + ASI+ +++
Sbjct: 458 SVLRACA---NTASIKHTVQ 474



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/313 (27%), Positives = 141/313 (45%), Gaps = 66/313 (21%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  YAK G +  AR +F+ +P  D+I W+ L+S +A+S                     
Sbjct: 292 LLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQS--------------------- 330

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                 + N+    +A ++F RM +    P +++    L ACA +  L  G+QIH  ++ 
Sbjct: 331 ------YQNE----QAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIK 380

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                 +FV NAL D+YAK   ++ +  +F  + + N VSWN +I GY ++G  +  + +
Sbjct: 381 LGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSV 440

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQT---------------------------------- 270
           FQEM+   +   +VT S++L AC  T                                  
Sbjct: 441 FQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAK 500

Query: 271 -GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I DA ++F  I + D V W  +I GY  +G+  DAL LFN M   D +P+  +  ++
Sbjct: 501 CGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVAL 560

Query: 330 VSSCAKLASLYHG 342
           +S C     +  G
Sbjct: 561 LSVCGSTGLVNQG 573



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 191/430 (44%), Gaps = 41/430 (9%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E + +++      N+  L+  LQ+  ++ F +     +HN ++       KL Y  +LF 
Sbjct: 338 EMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQ-IHNLVI-------KLGYESELF- 388

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
                     NAL+  +A+  ++++   +F  +   + VS+NT I G+   GF+ +AL V
Sbjct: 389 --------VGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSV 440

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M+      T  T  S L ACA    ++   QIH  I       +  V N+L D YAK
Sbjct: 441 FQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAK 500

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I  A  +F+ +   ++VSWN +ISGY  +G+    ++LF  M      P++VT   +
Sbjct: 501 CGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVAL 560

Query: 264 LGACFQTGRIDDAGRLF------HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           L  C  TG ++    LF      H IK   +  +T ++    + G+  DAL    ++ S 
Sbjct: 561 LSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDH-YTCIVRLLGRAGRLNDALKFIGDIPST 619

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
              P      +++SSC    ++  G+    K + +   D+      L +MY   G+ D  
Sbjct: 620 ---PSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDE-TTYVLLSNMYAAAGILDQV 675

Query: 378 WTVFNMMPTRNV-------VSWNSM---INGYAQNGQDLEALALYDKLLQ-ENLKPDSFT 426
             +   M  RN+       +SW  +   ++ ++    D   + + + +L+  NLK     
Sbjct: 676 ALLRKSM--RNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWLNLKASREG 733

Query: 427 FVSVLSACLH 436
           +V  ++  LH
Sbjct: 734 YVPDINVVLH 743


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/669 (34%), Positives = 364/669 (54%), Gaps = 72/669 (10%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N  LHF    G + YA   F ++   DI+ WNA+                          
Sbjct: 42  NACLHF----GDVNYAHKAFREVSEPDILLWNAI-------------------------- 71

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                I G+  K      ++++  MQ  +  P  +T +  L AC        GKQIHG+ 
Sbjct: 72  -----IKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQT 126

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                G NVFV+N+L  MYAK G+I  AR +FD++++R +VSW  +ISGY++NG P + +
Sbjct: 127 FKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEAL 186

Query: 243 DLFQEMQLLGLNPDEVTVSNI----------------------LGACFQT---------- 270
           ++F+EM+   + PD + + ++                      LG  F+           
Sbjct: 187 NVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMY 246

Query: 271 ---GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
              G ++ A   F+ +++ + + W  MI GY  NG  E+A+ LF EM+++++R D  ++ 
Sbjct: 247 AKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMR 306

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S V + A++ SL   + + G        DD  V++ LIDMY KCG    A  VF+ +  +
Sbjct: 307 SAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADK 366

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VV W+ MI GY  +G   EA+ LY+++ Q  + P+  TF+ +L+AC ++ L + G   F
Sbjct: 367 DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELF 426

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             +   HGI P   HY+C+++LLGR+  +++A D I S+P KP   +W  LLS C +   
Sbjct: 427 HLMPD-HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRK 485

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           ++ GE+AA  LF L+P N G Y+ LSN+YA+   W  VA++R  M  K + K   +S IE
Sbjct: 486 VRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIE 545

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           I+  +  F   DR+HP+++ I+EEL +L K+L+ AG+ P+ + VLHD   EE  +++C+H
Sbjct: 546 INGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHH 605

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SE+LA+AY +I    G T +RI KN+R C +CH  +K  S ++ R II+RD+ RFHHF  
Sbjct: 606 SERLAVAYGIISTAPGTT-LRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKD 664

Query: 688 GNCSCKDNW 696
           G CSC D W
Sbjct: 665 GVCSCGDFW 673



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 171/378 (45%), Gaps = 67/378 (17%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           +  F+ N L+  YAK G++ YAR +FDK+  R ++SW +++S + ++G         D M
Sbjct: 133 SNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNG---------DPM 183

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                 EAL VF  M++   +P     VS + A   + DL +GK
Sbjct: 184 ----------------------EALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK 221

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            IHG +    L     +  +LT MYAK G ++ AR+ F+RM   NL+ WN MISGY  NG
Sbjct: 222 SIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNG 281

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL----------------- 279
             ++ I LF+EM    +  D +T+ + + A  Q G ++ A  L                 
Sbjct: 282 YGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNT 341

Query: 280 ------------------FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                             F  + +KD V W+ MI+GY  +G  ++A+ L+NEM    V P
Sbjct: 342 GLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCP 401

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +  +   ++++C     +  G  +       G++      S ++D+  + G  + A+   
Sbjct: 402 NDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFI 461

Query: 382 NMMPTRNVVS-WNSMING 398
             MP +  VS W ++++ 
Sbjct: 462 MSMPIKPGVSVWGALLSA 479



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 146/304 (48%), Gaps = 25/304 (8%)

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SW  M+  +L          ++ ++ + GL+     +   + AC   G ++ A + F  +
Sbjct: 9   SWMFMLLKHLDQ--------VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREV 60

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            E D + W  +I GYTQ    +  + ++ +M    V P+ F+   V+ +C   +    G+
Sbjct: 61  SEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGK 120

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +HG+    G   ++ V ++L+ MY K G    A  VF+ +  R VVSW S+I+GY QNG
Sbjct: 121 QIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNG 180

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--- 460
             +EAL ++ ++ Q N+KPD    VSV++A  + +   +G+       ++HG+   L   
Sbjct: 181 DPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGK-------SIHGLVTKLGLE 233

Query: 461 ---DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
              D    +  +  +   V+ A      +  KPN ++W+ ++S  A  G   +GE A + 
Sbjct: 234 FEPDIVISLTTMYAKRGLVEVARFFFNRM-EKPNLILWNAMISGYANNG---YGEEAIKL 289

Query: 518 LFEL 521
             E+
Sbjct: 290 FREM 293


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/605 (36%), Positives = 347/605 (57%), Gaps = 38/605 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRF 152
           N L++ + + G +QD   LF+++P RD +S+ + +            L +F  M ++D  
Sbjct: 42  NNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGL 101

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P  Y     + ACA L  +++GKQ+H   +V  +  +  V+++L DMYAK G  D  R 
Sbjct: 102 QPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRV 161

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD ++++N +SW  MISGY                                    Q+GR
Sbjct: 162 VFDSISSKNSISWTAMISGYA-----------------------------------QSGR 186

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVS 331
             DA +LF  +  K+ + WT +I G  Q+G   D+  LF EM S+ +   D F +SS++ 
Sbjct: 187 KLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIG 246

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           + A LA L  G+ +H   ++LG +  L VS+AL+DMY KC     A  +F  M  R++VS
Sbjct: 247 ASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVS 306

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+G   EAL+LY+++L   LKP+  TFV ++ AC H  L  +G+  F+S+ 
Sbjct: 307 WTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMI 366

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GI PSL HY C+++LL RS  +++A +LIK++P KP+   W+ LLS C    +   G
Sbjct: 367 KDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIG 426

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
              A HL  L+P +   YI+LSN+YA+   WE V+ +R  M +  VKK   YS I +  +
Sbjct: 427 IRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKE 486

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
              F++ + +HP  E I+  L +L  ++++ G+ P+T  VLHD +++EK + + +HSE+L
Sbjct: 487 SQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERL 546

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A+AY L+K   G+  + I+KN+RVCGDCH  +KF S I+ R I++RD+NR+HHF  G CS
Sbjct: 547 AVAYGLLKGIPGMV-LHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCS 605

Query: 692 CKDNW 696
           C + W
Sbjct: 606 CNNFW 610



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 146/278 (52%), Gaps = 11/278 (3%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           + L+  YAK G     R +FD +  ++ ISW A++S +A+SG   D   LF KMP+++ +
Sbjct: 144 SSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLL 203

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGK 181
           S+   I+G    G   ++  +F  M+    +  D +   S + A A L  L  GKQIH  
Sbjct: 204 SWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCL 263

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           +++     ++FV NAL DMYAK  ++  A+ +F RM  R++VSW  +I G  ++G  ++ 
Sbjct: 264 VILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEA 323

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC------WTTMI 295
           + L+  M   GL P+EVT   ++ AC   G +   GR F     KD         +T ++
Sbjct: 324 LSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSK-GRYFFNSMIKDYGINPSLQHYTCLL 382

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
              +++G  E+A  L   M     +PD+ + ++++S+C
Sbjct: 383 DLLSRSGHLEEAENLIKAM---PFKPDEATWAALLSAC 417



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 14/233 (6%)

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +CA+  S   G+ +H   +  G+D    +S+ LI+MY KCG+  DA  +FN +P R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +SW S++    Q       L+++  +  Q+ L+PD + F  ++ AC      ++G+    
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQ--- 126

Query: 449 SISAVHGITPSLDH---YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            + A   ++P  D     + ++++  +    D    +  S+  K NS+ W+ ++S  A  
Sbjct: 127 -VHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSK-NSISWTAMISGYAQS 184

Query: 506 GDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           G     ++ A  LF+  P+ N   +  L +     G W D   +   M+SK +
Sbjct: 185 GR----KLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/264 (21%), Positives = 114/264 (43%), Gaps = 42/264 (15%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L K++   + L  YE ++ F+ N L+  YAK   +  A+ +F +M  RDI+SW +++   
Sbjct: 256 LGKQIHCLVILLGYE-SSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSII--- 311

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
                                        G A  G + EAL +++RM     +P + T V
Sbjct: 312 ----------------------------VGTAQHGLAEEALSLYNRMLSTGLKPNEVTFV 343

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKARWLFDRMN 218
             + AC+ +  + +G+     + + + G N  +++   L D+ ++ G +++A  L   M 
Sbjct: 344 GLIYACSHVGLVSKGRYFFNSM-IKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMP 402

Query: 219 NR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRI 273
            + +  +W  ++S    N      I +     LL L P++    + +SNI  +      +
Sbjct: 403 FKPDEATWAALLSAC--NHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESV 460

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVG 297
               RL   ++ K    ++ +++G
Sbjct: 461 SKVRRLMAAMEVKKEPGYSCIVLG 484


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 246/700 (35%), Positives = 366/700 (52%), Gaps = 98/700 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRM--- 147
           NAL++ ++RSGS++D   +FD++    I D +S+N+ +A        R AL +FS M   
Sbjct: 188 NALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTI 247

Query: 148 --QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             +K   E +D    V+ L ACA L  L + K+IH   +      + FV NAL D YAK 
Sbjct: 248 VHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKC 307

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ--------------------------- 237
           G +  A  +F+ M  +++VSWN M++GY ++G+                           
Sbjct: 308 GSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVI 367

Query: 238 --------PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD-------------- 275
                    ++ +D FQ+M L G  P+ VT+ ++L AC   G +                
Sbjct: 368 AGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLL 427

Query: 276 ---------------------------------AGRLFHVI--KEKDNVCWTTMIVGYTQ 300
                                            A  +F+ I  +E++ V WT MI GY Q
Sbjct: 428 SLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQ 487

Query: 301 NGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD- 357
            G   DAL LF+EM+S+   V P+ ++IS ++ +CA L+SL  G+ +H         +  
Sbjct: 488 YGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESS 547

Query: 358 -LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V++ LIDMY KCG  D A  VF+ MP RN VSW SM++GY  +G+  EAL ++DK+ 
Sbjct: 548 VYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ 607

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +    PD  +F+ +L AC H+ + ++G ++FD + + +G+  S  HYAC+I+LL RS  +
Sbjct: 608 KAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRL 667

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           DKA   I+ +P +P++ IW  LLS C +  +++  E A   L  ++  N G Y ++SN+Y
Sbjct: 668 DKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIY 727

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A   RW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  L +LI
Sbjct: 728 ATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLI 787

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            +++  G+ P T   LHD  +EEK   +  HSEKLALAY L+    G  PIRI KN+RVC
Sbjct: 788 GRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGC-PIRITKNLRVC 846

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH    + S I+   II+RDS+RFHHF  G+CSC   W
Sbjct: 847 GDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 230/509 (45%), Gaps = 97/509 (19%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
             +++++   G+  D  ++ +++    +V +N  +     +G    A+ V  RM +   +
Sbjct: 87  TGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTK 146

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T   AL AC +L   R G   HG I       NVFV NAL  MY++ G ++ A  +
Sbjct: 147 PDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLV 206

Query: 214 FDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLL------GLNPDEVTVSNIL 264
           FD +  +   +++SWN +++ ++K   P+  +DLF EM  +          D +++ NIL
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNIL 266

Query: 265 GAC-----------------------------------FQTGRIDDAGRLFHVIKEKDNV 289
            AC                                    + G + DA  +F+V++ KD V
Sbjct: 267 PACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVV 326

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDV------------------------------ 319
            W  M+ GYTQ+GK   A  LF  M  E++                              
Sbjct: 327 SWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQM 386

Query: 320 -----RPDKFSISSVVSSCAKLASLYHGQVVHG---KAVVLGV---------DDDLLVSS 362
                 P+  +I S++S+CA L +L  G   H    K  +L +          +DL+V +
Sbjct: 387 ILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHN 446

Query: 363 ALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-- 418
           ALIDMY KC     A T+FN +P   RNVV+W  MI GYAQ G   +AL L+ +++ +  
Sbjct: 447 ALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPY 506

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA-CMINLLGRSSDVD 477
            + P+++T   +L AC H      G+     ++  H    S+   A C+I++  +  DVD
Sbjct: 507 AVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVD 566

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A ++  S+P K N + W++++S   M G
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHG 594



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 206/441 (46%), Gaps = 74/441 (16%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM--- 116
           F+ N L+  YAK G +  A ++F+ M  +D++SWNA+++ + +SG       LF  M   
Sbjct: 295 FVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKE 354

Query: 117 --PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
             P+ D ++++  IAG+A +G+ +EAL  F +M     EP   T +S L+ACA L  L +
Sbjct: 355 NIPL-DVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQ 413

Query: 175 GKQIHGKIVVGNL------------GGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNR 220
           G + H   +   L            G ++ V NAL DMY+K      AR +F+ +    R
Sbjct: 414 GMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRER 473

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACF---------- 268
           N+V+W +MI GY + G     + LF EM  +   + P+  T+S IL AC           
Sbjct: 474 NVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQ 533

Query: 269 ---------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                      + G +D A  +F  + +++ V WT+M+ GY  +
Sbjct: 534 IHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH 593

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGVDDDLL 359
           G+ ++AL +F++M      PD  S   ++ +C+     + G V  G     ++  D  ++
Sbjct: 594 GRGKEALDIFDKMQKAGFVPDDISFLVLLYACS-----HSGMVDQGLDYFDIMRSDYGVI 648

Query: 360 VS----SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALALYD 413
            S    + +ID+  + G  D AW     MP   +   W ++++     +  +L   AL +
Sbjct: 649 ASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYAL-N 707

Query: 414 KLLQENLKPD-SFTFVSVLSA 433
           KL+    + D S+T +S + A
Sbjct: 708 KLVSMKAENDGSYTLISNIYA 728



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 89/172 (51%), Gaps = 15/172 (8%)

Query: 14  LYSRGQAATEEAYTQ--LVLDCTRVNDVELAKRLQSHMDLNF-YEPNTTFLHNRLLHFYA 70
           + S+  A    AYT   +++ C  ++ + + K++ +++  +  YE +  F+ N L+  Y+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNT 126
           K G +  AR++FD MP R+ +SW +++S +   G  ++   +FDKM     + D +S+  
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL--RRGK 176
            +   ++ G   + L  F  M+      +DY  +++    A ++DL  R G+
Sbjct: 621 LLYACSHSGMVDQGLDYFDIMR------SDYGVIASAQHYACVIDLLARSGR 666



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + ++  Y  CG T DA +V   +     V WN ++  + + G+   A+ +  ++L+  
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            KPD FT    L AC     +  G       SA HG+
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSG-------SAFHGL 174


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/622 (35%), Positives = 347/622 (55%), Gaps = 74/622 (11%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ NRL+  Y K   L  AR LFD+MP R+  +WN+L+S   +SG + +   LF  MP  
Sbjct: 51  FIQNRLIDVYGKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEP 110

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D  S+N+ ++GFA      E+L+ F +M ++ F   +Y+  SAL+ACA L+DL  G Q+H
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +       +V++ +AL DMY+K G +  A  +F  M  RNLV+WN +I+ Y +NG   
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPAS 230

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
           + +++F  M   GL PDEVT+++++ AC                                
Sbjct: 231 EALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNAL 290

Query: 268 ----FQTGRIDDAGRLFHVIKEKDNVCWTTM----------------------------- 294
                +  ++++A R+F  +  ++ V  T+M                             
Sbjct: 291 VDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWN 350

Query: 295 --IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH------ 346
             I GYTQNG+ E+AL LF  +  E + P  ++  +++S+CA LA L  G+  H      
Sbjct: 351 ALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQ 410

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
           G     G + D+ V ++LIDMY KCG  +D   VF  M  R+ VSWN++I GYAQNG   
Sbjct: 411 GFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGA 470

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EAL ++ K+L    KPD  T + VL AC HA L E G+++F S+   HG+ P  DHY CM
Sbjct: 471 EALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCM 529

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++LLGR+  +++A +LI+++P  P++++W +LL+ C + G+I+ G+ AA  L E++P N+
Sbjct: 530 VDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNS 589

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETE 586
           GPY++LSNMYA  GRW DV  +R  M+ + V K    SWIE++++VH F+ +D++HP  +
Sbjct: 590 GPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRK 649

Query: 587 IIYEELSKLIKKLQEAGFSPNT 608
            IY  L  L ++++  G+ P+ 
Sbjct: 650 QIYSVLKMLTEQMKRVGYIPDA 671



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 174/371 (46%), Gaps = 40/371 (10%)

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +D + P        L++C +    R  + +H +I++      +F++N L D+Y K   +D
Sbjct: 8   RDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLD 67

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR LFDRM  RN  +WN +IS   K                                  
Sbjct: 68  DARKLFDRMPQRNTFTWNSLISVLTK---------------------------------- 93

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
            +G +D+A RLF  + E D   W +M+ G+ Q+ + E++L  F +M  ED   +++S  S
Sbjct: 94  -SGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGS 152

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
            +S+CA L  L  G  VH          D+ + SALIDMY KCG    A  VF+ M  RN
Sbjct: 153 ALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERN 212

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           +V+WNS+I  Y QNG   EAL ++ +++   L+PD  T  SV+SAC      + G     
Sbjct: 213 LVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHA 272

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +   +     L     ++++  + S V++A  +   +  + N +  ++++S  A    +
Sbjct: 273 RVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR-NVVSETSMVSGYARAASV 331

Query: 509 KHGEMAARHLF 519
           K    AAR +F
Sbjct: 332 K----AARFMF 338



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 60/281 (21%), Positives = 115/281 (40%), Gaps = 58/281 (20%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYE-----PNTTFLHNRLLHFYAKSGKLF 76
           T   +  L+  C  + D+ L ++  +H+    +E      +  F+ N L+  Y K G + 
Sbjct: 380 THYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIE 439

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
               +F+KM  RD +SWNA+                               I G+A  G+
Sbjct: 440 DGSRVFEKMKERDCVSWNAI-------------------------------IVGYAQNGY 468

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI------HGKIVVGNLGGN 190
             EALQ+F +M     +P   T +  L AC+    +  G+        HG I + +    
Sbjct: 469 GAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDH--- 525

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
                 + D+  + G +++A+ L + M  N + V W  +++    +G  +  +      +
Sbjct: 526 ---YTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIE--MGKHAAEK 580

Query: 250 LLGLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           LL ++P      V +SN+     + GR  D  R+  +++++
Sbjct: 581 LLEIDPWNSGPYVLLSNMYA---ELGRWGDVVRVRKLMRQQ 618


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/563 (38%), Positives = 329/563 (58%), Gaps = 15/563 (2%)

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           +A+ ++  M    F P  YT+ + L AC+    +  G Q+H  +V   LGG+  + ++  
Sbjct: 120 KAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAI 179

Query: 199 DMYAKGGEIDKARWLFD-RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            MYA  G + +AR + D +    + V WN MI GYL+ G+ +   +LF+ M      PD 
Sbjct: 180 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDR 233

Query: 258 VTVSN---ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
             +S    ++    + G ++ A   F  +KE+D + W+ MI GY Q G   +AL +F++M
Sbjct: 234 SMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQM 293

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
             E +RP KF + SV+S+CA L +L  G+ +H  A    +  D ++ ++L+DMY KCG  
Sbjct: 294 QKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRI 353

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           D AW VF  M  + V SWN+MI G A +G+  +A+ L+ K+   ++ P+  TFV VL+AC
Sbjct: 354 DLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNAC 410

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H  L ++G   F+S+   +G+ P ++HY C+++LLGR+  + +A  ++ S+P +P   +
Sbjct: 411 AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAV 470

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LL  C   G+++ GE   + L ELEP N+G Y +LSN+YA  GRWE+V  +R  MK 
Sbjct: 471 WGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKE 530

Query: 555 KNVKKFAAYSWIEID-NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
           + +K     S I++   +VHKF+  D +HP+ + IY+ L K+ ++LQ  G+ P+   VL 
Sbjct: 531 RGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLF 590

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  EEEK  ++  HSEKLA+ + LI    G T IRI+KN+RVC DCH   K  S +  R 
Sbjct: 591 DIDEEEKETAVWQHSEKLAIGFGLINTSPGTT-IRIVKNLRVCEDCHSATKLISQVYNRE 649

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD  R+HHF  G CSCKD W
Sbjct: 650 IIVRDRIRYHHFRNGACSCKDFW 672



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 173/330 (52%), Gaps = 7/330 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIIS-WNALLSAHARSGSVQDLRALFDKMPIRDS 121
           N ++  Y + G++  AR+LF+ MP R +IS WNA++S  +R G V+  R  FD+M  RD 
Sbjct: 208 NAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDE 267

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +S++  I G+  +G   EAL++F +MQK++  P  +   S L+ACA L  L +G+ IH  
Sbjct: 268 ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY 327

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
               ++  +  +  +L DMYAK G ID A  +F++M+N+ + SWN MI G   +G+ +  
Sbjct: 328 AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 387

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
           IDLF +M    +NP+E+T   +L AC   G +     +F+ ++++  V       G   +
Sbjct: 388 IDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 444

Query: 302 GKEEDALILFNEMLSEDV--RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
                 L+   E +   +   P      +++ +C K  ++  G+ V GK ++     +  
Sbjct: 445 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV-GKILLELEPQNSG 503

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
             + L ++Y K G  ++   V  +M  R +
Sbjct: 504 RYTLLSNIYAKAGRWEEVGEVRKLMKERGI 533



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 105/251 (41%), Gaps = 52/251 (20%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           L   L+  YAK G++  A ++F+KM  +++ SWNA++   A  G  +D   LF KM I  
Sbjct: 339 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINP 398

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD----------------------------- 150
           + +++   +   A+ G  ++ L +F+ M+K+                             
Sbjct: 399 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 458

Query: 151 ----RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG- 205
                 EPT     + L AC +  ++  G+++ GKI++     N      L+++YAK G 
Sbjct: 459 VSSIPTEPTPAVWGALLGACRKHGNVELGERV-GKILLELEPQNSGRYTLLSNIYAKAGR 517

Query: 206 --EIDKARWLFDRMNNRNLVSWNLMISG-------YLKNGQPKKCIDLFQ-------EMQ 249
             E+ + R L      +     +++  G        + +G   +  D++Q        +Q
Sbjct: 518 WEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQ 577

Query: 250 LLGLNPDEVTV 260
           + G  PD   V
Sbjct: 578 MEGYEPDPSQV 588


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/669 (34%), Positives = 368/669 (55%), Gaps = 70/669 (10%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPT 155
           ++A +   S++  R +FD++P  +S ++NT I  +A+      ++  F  M  + +  P 
Sbjct: 71  MAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPN 130

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT    + A A++  L  G+ +HG  V   +G +VFV N+L   Y   G++D A  +F 
Sbjct: 131 KYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFT 190

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            +  +++VSWN MI+G+++ G P K ++LF++M+   +    VT+  +L AC        
Sbjct: 191 TIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEF 250

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT- 299
                                       + G I+DA RLF  ++EKDNV WTTM+ GY  
Sbjct: 251 GRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAI 310

Query: 300 ------------------------------QNGKEEDALILFNEM-LSEDVRPDKFSISS 328
                                         QNGK  +ALI+F+E+ L ++++ ++ ++ S
Sbjct: 311 SEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVS 370

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
            +S+CA++ +L  G+ +H      G+  +  V+SALI MY KCG  + +  VFN +  R+
Sbjct: 371 TLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRD 430

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           V  W++MI G A +G   EA+ ++ K+ + N+KP+  TF +V  AC H  L +  ++ F 
Sbjct: 431 VFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFH 490

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            + + +GI P   HYAC++++LGRS  ++KAV  I+++P  P++ +W  LL  C +  ++
Sbjct: 491 QMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANL 550

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
              EMA   L ELEP N G +++LSN+YA  G+WE+V+ +R  M+   +KK    S IEI
Sbjct: 551 NLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEI 610

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE-KVKSICYH 627
           D  +H+F+S D  HP +E +Y +L ++++KL+  G+ P    VL   +EEE K +S+  H
Sbjct: 611 DGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLH 670

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLA+ Y LI        IR++KN+RVCGDCH   K  S +  R II+RD  RFHHF  
Sbjct: 671 SEKLAICYGLIST-EAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRN 729

Query: 688 GNCSCKDNW 696
           G CSC D W
Sbjct: 730 GQCSCNDFW 738



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 134/470 (28%), Positives = 219/470 (46%), Gaps = 82/470 (17%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG--GEIDKARWLFDR 216
           H+S +  C   + LR+ KQ HG ++      + +  + L  M A      ++ AR +FD 
Sbjct: 33  HISLIERC---VSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDE 89

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCI----DLFQEMQ----------------------- 249
           +   N  +WN +I  Y     P   I    D+  E Q                       
Sbjct: 90  IPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSL 149

Query: 250 ---LLGLN-----PDEVTVSNILGAC-FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
              L G+        +V V+N L  C F  G +D A ++F  IKEKD V W +MI G+ Q
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G  + AL LF +M SEDV+    ++  V+S+CAK+ +L  G+ V        V+ +L +
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTL 269

Query: 361 SSALIDMYCKCGVTDDA--------------WT-----------------VFNMMPTRNV 389
           ++A++DMY KCG  +DA              WT                 V N MP +++
Sbjct: 270 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329

Query: 390 VSWNSMINGYAQNGQDLEALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           V+WN++I+ Y QNG+  EAL ++ +L LQ+N+K +  T VS LSAC      E G+    
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR-WIH 388

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S    HGI  +    + +I++  +  D++K+ ++  S+  K +  +WS ++   AM G  
Sbjct: 389 SYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSV-EKRDVFVWSAMIGGLAMHG-- 445

Query: 509 KHGEMAARHLFELEPINAGPY-IMLSNMYAAC---GRWEDVASIRSSMKS 554
             G  A    ++++  N  P  +  +N++ AC   G  ++  S+   M+S
Sbjct: 446 -CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMES 494



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 139/250 (55%), Gaps = 2/250 (0%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++ ++E  +++ S+++ N    N T L N +L  Y K G +  A+ LFD M  +D ++
Sbjct: 242 CAKIRNLEFGRQVCSYIEENRVNVNLT-LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 300

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDR 151
           W  +L  +A S   +  R + + MP +D V++N  I+ +   G   EAL VF  +Q +  
Sbjct: 301 WTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKN 360

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +    T VS L+ACAQ+  L  G+ IH  I    +  N  V +AL  MY+K G+++K+R
Sbjct: 361 MKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSR 420

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ +  R++  W+ MI G   +G   + +D+F +MQ   + P+ VT +N+  AC  TG
Sbjct: 421 EVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 480

Query: 272 RIDDAGRLFH 281
            +D+A  LFH
Sbjct: 481 LVDEAESLFH 490



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 168/379 (44%), Gaps = 69/379 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  +   G +     +F  +  +D VS+N+ I GF  KG   +AL++F +M+
Sbjct: 165 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 224

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  + +  T V  L+ACA++ +L  G+Q+   I    +  N+ + NA+ DMY K G I+
Sbjct: 225 SEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 284

Query: 209 KARWLFDRMN-------------------------------NRNLVSWNLMISGYLKNGQ 237
            A+ LFD M                                 +++V+WN +IS Y +NG+
Sbjct: 285 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGK 344

Query: 238 PKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGR------------------------ 272
           P + + +F E+QL   +  +++T+ + L AC Q G                         
Sbjct: 345 PNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTS 404

Query: 273 -----------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                      ++ +  +F+ ++++D   W+ MI G   +G   +A+ +F +M   +V+P
Sbjct: 405 ALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKP 464

Query: 322 DKFSISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           +  + ++V  +C+    +   + + H      G+  +    + ++D+  + G  + A   
Sbjct: 465 NGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKF 524

Query: 381 FNMMPTRNVVS-WNSMING 398
              MP     S W +++  
Sbjct: 525 IEAMPIPPSTSVWGALLGA 543


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/662 (34%), Positives = 372/662 (56%), Gaps = 40/662 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + GK  ++R    K    D+I  N+LL+ +A+ GS++D + LF++M  R   S+N  IA 
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAA 197

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A  G   EA++++  M     EP+  T  S L+AC+ L  L +G++IH  I       +
Sbjct: 198 YAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELD 254

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + ++NAL  MYA+   +D A  +F R+  R++VSW+ MI+ + +     + I+ + +MQL
Sbjct: 255 LSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQL 314

Query: 251 LGLNPDEVTVSNILGACFQTG-----------------------------------RIDD 275
            G+ P+  T +++L AC   G                                    +D+
Sbjct: 315 EGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDE 374

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVSSCA 334
           A  LF  I+ +D   WT +I GY++ G     L L+ EM +    P  K   S V+S+CA
Sbjct: 375 ARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 434

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            L +    +  H      G+  D +++++L++MY + G  + A  VF+ M +R+ ++W +
Sbjct: 435 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTT 494

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I GYA++G+   AL LY ++  E  +P   TF+ VL AC HA L E+G+  F SI + +
Sbjct: 495 LIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDY 554

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            + P++ HY+C+I+LL R+  +  A +LI ++P +PN + WS+LL    +  D+K    A
Sbjct: 555 AMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHA 614

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  + +L+P++   Y++LSN++A  G    +AS+R++M ++ VKK    SWIE+ +++H+
Sbjct: 615 AGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHE 674

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F   D +HP  + I+ EL +L  K++EAG+ P ++ VLHD  E+EK   +  HSEKLA+A
Sbjct: 675 FNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIA 734

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G T +RI   +R+C DCH  +KF S I  R II+RDS+RFH F  G CSC D
Sbjct: 735 FGLIATAPGTT-LRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGD 793

Query: 695 NW 696
            W
Sbjct: 794 YW 795



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/504 (25%), Positives = 230/504 (45%), Gaps = 81/504 (16%)

Query: 46  QSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS 105
           Q H  ++       FL N ++  Y K G +  AR  FD +  ++  SW ++L+A+A++G 
Sbjct: 45  QIHDRISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGH 104

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
                                           R AL ++ RM     +P    + + L A
Sbjct: 105 Y-------------------------------RAALDLYKRMD---LQPNPVVYTTVLGA 130

Query: 166 CAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           CA +  L  GK IH +I     L  +V + N+L  MYAK G ++ A+ LF+RM+ R++ S
Sbjct: 131 CASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSS 190

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------- 272
           WN MI+ Y ++G  ++ I L+++M    + P   T +++L AC        GR       
Sbjct: 191 WNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALIS 247

Query: 273 -----------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                                  +DDA ++F  +  +D V W+ MI  + +    ++A+ 
Sbjct: 248 SRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIE 307

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            +++M  E VRP+ ++ +SV+ +CA +  L  G+ VH + +  G    L+  +AL+D+Y 
Sbjct: 308 FYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYT 367

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFV 428
             G  D+A ++F+ +  R+   W  +I GY++ G     L LY ++      P +   + 
Sbjct: 368 SYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYS 427

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            V+SAC     F   +     I A  G+         ++N+  R  +++ A  +   +  
Sbjct: 428 CVISACASLGAFADARQAHSDIEA-DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSS 486

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGE 512
           + ++L W+TL++     G  KHGE
Sbjct: 487 R-DTLAWTTLIA-----GYAKHGE 504



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 127/451 (28%), Positives = 203/451 (45%), Gaps = 61/451 (13%)

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
           +A  Q  DL   +QIH +I  G    NVF+ N +   Y K G +  AR  FD +  +N  
Sbjct: 32  DALRQCQDLESVRQIHDRIS-GAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDY 90

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------- 267
           SW  M++ Y +NG  +  +DL++ M    L P+ V  + +LGAC                
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIKALEEGKAIHSRI 147

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G ++DA RLF  +  +    W  MI  Y Q+G  E+A
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEA 207

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + L+ +M   DV P   + +SV+S+C+ L  L  G+ +H      G + DL + +AL+ M
Sbjct: 208 IRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTM 264

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y +C   DDA  +F  +P R+VVSW++MI  +A+     EA+  Y K+  E ++P+ +TF
Sbjct: 265 YARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 324

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            SVL AC        G+   D I   +G   +L +   +++L      +D+A  L   + 
Sbjct: 325 ASVLLACASVGDLRAGRAVHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE 383

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY--IMLSNMYAACGRWEDV 545
           ++   L W+ L+   + +G   H         E++     P   I+ S + +AC      
Sbjct: 384 NRDEGL-WTVLIGGYSKQG---HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 439

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           A  R            A+S IE D  +  FV
Sbjct: 440 ADARQ-----------AHSDIEADGMISDFV 459



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/433 (27%), Positives = 196/433 (45%), Gaps = 58/433 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-TFLHNRLLHFYAKS 72
           L+ R    +  ++  ++    +    E A RL   MD+   EP+  TF    +L   +  
Sbjct: 179 LFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV---EPSVRTF--TSVLSACSNL 233

Query: 73  GKLFYARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           G L   R +   +  R    D+   NALL+ +AR   + D   +F ++P RD VS++  I
Sbjct: 234 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 293

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           A FA      EA++ +S+MQ +   P  YT  S L ACA + DLR G+ +H +I+     
Sbjct: 294 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYK 353

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
             +    AL D+Y   G +D+AR LFD++ NR+   W ++I GY K G     ++L++EM
Sbjct: 354 ITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREM 413

Query: 249 QLLGLNP-DEVTVSNILGACFQTGRIDD-------------------------------- 275
           +     P  ++  S ++ AC   G   D                                
Sbjct: 414 KNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGN 473

Query: 276 ---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
              A ++F  +  +D + WTT+I GY ++G+   AL L+ EM  E   P + +   V+ +
Sbjct: 474 LESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYA 533

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPT 386
           C+     + G    GK + + +  D  +       S +ID+  + G   DA  + N MP 
Sbjct: 534 CS-----HAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPV 588

Query: 387 R-NVVSWNSMING 398
             N V+W+S++  
Sbjct: 589 EPNDVTWSSLLGA 601



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 116/288 (40%), Gaps = 61/288 (21%)

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ + + ++  Y KCG    A   F+ +  +N  SW SM+  YAQNG    AL LY ++ 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT------------------- 457
             +L+P+   + +VL AC      E G+     IS   G+                    
Sbjct: 116 --DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 458 ------------PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
                        S+  +  MI    +S   ++A+ L + +  +P+   ++++LS C+  
Sbjct: 174 EDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNL 233

Query: 506 GDIKHGE-----MAARHL-FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           G +  G      +++R    +L   NA     L  MYA C   +D A I   +  ++V  
Sbjct: 234 GLLDQGRKIHALISSRGTELDLSLQNA-----LLTMYARCKCLDDAAKIFQRLPRRDVVS 288

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           ++A         +  F   D        +++E  +   K+Q  G  PN
Sbjct: 289 WSAM--------IAAFAETD--------LFDEAIEFYSKMQLEGVRPN 320


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/638 (35%), Positives = 349/638 (54%), Gaps = 52/638 (8%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL A+ + G +   R +F +M  +D+V+YN  + G + +G   +ALQ+F+ M++  + 
Sbjct: 388  NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS 447

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                           LL     +     ++      NVFV N+L D Y+K   +D  R L
Sbjct: 448  ----------RHPLHLLQYSHSRSRSTSVL------NVFVNNSLLDFYSKCDCLDDMRRL 491

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN----------------PD- 256
            FD M  R+ VS+N++I+ Y  N      + LF+EMQ LG +                PD 
Sbjct: 492  FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 551

Query: 257  -------------EVTVSNILGACF-----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                          +   ++LG        + G +D A   F    EK  + WT +I GY
Sbjct: 552  HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 611

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             QNG+ E+AL LF++M    +RPD+ + SS++ + + LA +  G+ +H   +  G    +
Sbjct: 612  VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSV 671

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
               S L+DMY KCG  D+A   F+ MP RN +SWN++I+ YA  G+   A+ +++ +L  
Sbjct: 672  FSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHC 731

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
               PDS TF+SVL+AC H  L +    +F  +   + I+P  +HYAC+I+ LGR     +
Sbjct: 732  GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQ 791

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
               ++  +P K + +IW+++L  C + G+ +   +AA  LF +EP +A PY++LSN+YA 
Sbjct: 792  VQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYAR 851

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             G+WED A ++  M+ + V+K + YSW+EI  K++ F S D T P  + I +EL +L K+
Sbjct: 852  AGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKE 911

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            + + G+ P+    LH    E K++S+ YHSE+LA+A+ L+  P G TPIRIMKN+  C D
Sbjct: 912  MDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAG-TPIRIMKNLTACLD 970

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH  +K  S I+ R II+RDS RFHHF  G CSC D W
Sbjct: 971  CHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/472 (28%), Positives = 227/472 (48%), Gaps = 26/472 (5%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T+  N  L     SG L  AR +FD+MP ++I S N +LSA++ SG +   + LF   P 
Sbjct: 257 TYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPH 316

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R++ ++   +   A  G + +AL +F  M  +   P   T  + LN     +       +
Sbjct: 317 RNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTV-----PSL 371

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H   +   L  +VFV N L D Y K G +  AR +F  M++++ V++N M+ G  K G  
Sbjct: 372 HPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLH 431

Query: 239 KKCIDLFQEMQLLGLNPDE------------------VTVSN-ILGACFQTGRIDDAGRL 279
            + + LF  M+  G +                     V V+N +L    +   +DD  RL
Sbjct: 432 TQALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRL 491

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  + E+DNV +  +I  Y  N      L LF EM            ++++S    L  +
Sbjct: 492 FDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDV 551

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
           + G+ +H + V+LG+  + L+ +ALIDMY KCG+ D A + F+    ++ +SW ++I GY
Sbjct: 552 HIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGY 611

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
            QNGQ  EAL L+  + +  L+PD  TF S++ A     +   G+    S     G   S
Sbjct: 612 VQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQ-LHSYLIRSGYKSS 670

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           +   + ++++  +   +D+A+     +P + NS+ W+ ++S  A  G+ K+ 
Sbjct: 671 VFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWNAVISAYAHYGEAKNA 721



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 9/129 (6%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ ++   + +  + L ++L S++  + Y+ ++ F  + L+  YAK G L  A   FD+M
Sbjct: 639 FSSIIKASSSLAMIGLGRQLHSYLIRSGYK-SSVFSGSVLVDMYAKCGCLDEALRTFDEM 697

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAIAGFANKGFSRE 139
           P R+ ISWNA++SA+A  G  ++   +F+ M      P  DSV++ + +A  ++ G + E
Sbjct: 698 PERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNP--DSVTFLSVLAACSHNGLADE 755

Query: 140 ALQVFSRMQ 148
            ++ F  M+
Sbjct: 756 CMKYFHLMK 764



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           + S + L+  +A+ G + +    FD+MP R+S+S+N  I+ +A+ G ++ A+++F  M  
Sbjct: 671 VFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLH 730

Query: 150 DRFEPTDYTHVSALNACAQ 168
             F P   T +S L AC+ 
Sbjct: 731 CGFNPDSVTFLSVLAACSH 749


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/669 (36%), Positives = 355/669 (53%), Gaps = 88/669 (13%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN 94
           +++   L + L  H  LNF          +L   YA  G L ++  LF + P  ++  W 
Sbjct: 41  QIHAALLRRGLHHHPILNF----------KLQRSYASLGHLHHSVTLFHRTPNPNVFLWT 90

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
            +++AHA           FD                         AL  +S+M     +P
Sbjct: 91  HIINAHAH----------FD---------------------LFHHALSYYSQMLTHPIQP 119

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +T  S L AC     L   + +H   +   L  +++V   L D YA+GG++  A+ LF
Sbjct: 120 NAFTLSSLLKACT----LHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLF 175

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D M  R+LVS+  M++ Y K+G   +   LF+ M +                        
Sbjct: 176 DAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGM------------------------ 211

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE-------MLSEDVRPDKFSIS 327
                      KD VCW  MI GY Q+G   +AL+ F +         +  VRP++ ++ 
Sbjct: 212 -----------KDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVV 260

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           +V+SSC ++ +L  G+ VH      G+  ++ V +AL+DMYCKCG  +DA  VF++M  +
Sbjct: 261 AVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGK 320

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VV+WNSMI GY  +G   EAL L+ ++    +KP   TFV+VL+AC HA L  +G   F
Sbjct: 321 DVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           DS+   +G+ P ++HY CM+NLLGR+  + +A DL++S+  +P+ ++W TLL  C +  +
Sbjct: 381 DSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           +  GE  A  L      ++G Y++LSNMYAA   W  VA +RS MK   V+K    S IE
Sbjct: 441 VSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIE 500

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           + N+VH+FV+ DR HP ++ IY  L K+   L+E  ++P T  VLHD  E+EK +S+  H
Sbjct: 501 VKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVH 560

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEKLALA+ LI    G   I+I+KN+RVC DCH  MK  S I GR II+RD NRFHHF  
Sbjct: 561 SEKLALAFGLISTSPGAA-IKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFEN 619

Query: 688 GNCSCKDNW 696
           G+CSC+D W
Sbjct: 620 GSCSCRDYW 628



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 12/184 (6%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           S +H   +H   +  G+    +++  L   Y   G    + T+F+  P  NV  W  +IN
Sbjct: 35  STHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIIN 94

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            +A       AL+ Y ++L   ++P++FT  S+L AC    L      H  +I    G++
Sbjct: 95  AHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKAC---TLHPARAVHSHAIK--FGLS 149

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA-AR 516
             L     +++   R  DV  A  L  ++P +  SL+  T +  C      KHG +  AR
Sbjct: 150 SHLYVSTGLVDAYARGGDVASAQKLFDAMPER--SLVSYTAMLTCYA----KHGMLPEAR 203

Query: 517 HLFE 520
            LFE
Sbjct: 204 VLFE 207


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/670 (33%), Positives = 368/670 (54%), Gaps = 71/670 (10%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM--QKDRFEP 154
           ++A +   S++  R +FD++P  +S ++NT I  +A+      ++  F  M   + +  P
Sbjct: 72  IAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYP 131

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             YT    + A A++  L  G+ +HG  +   +G +VFV N+L   Y   G++D A  +F
Sbjct: 132 NKYTFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 191

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
             +  +++VSWN MI+G+++ G P K ++LF++M+   +    VT+  +L AC       
Sbjct: 192 TTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLE 251

Query: 268 ----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        + G I+DA RLF  ++EKDNV WTTM+ GY 
Sbjct: 252 FGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYA 311

Query: 300 -------------------------------QNGKEEDALILFNEM-LSEDVRPDKFSIS 327
                                          QNGK  +AL++F+E+ L ++++ ++ ++ 
Sbjct: 312 ISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLV 371

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S +S+CA++ +L  G+ +H      G+  +  V+SALI MY KCG  + A  VFN +  R
Sbjct: 372 STLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKR 431

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +V  W++MI G A +G   EA+ ++ K+ + N+KP+  TF +V  AC H  L +  ++ F
Sbjct: 432 DVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLF 491

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             + + +GI P   HYAC++++LGRS  ++KAV  I+++P  P++ +W  LL  C +  +
Sbjct: 492 YKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHAN 551

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           +   EMA   L ELEP N G +++LSN+YA  G+W++V+ +R  M+   +KK    S IE
Sbjct: 552 LSLAEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIE 611

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE-KVKSICY 626
           ID  +H+F+S D  HP +E +Y +L ++++KL+  G+ P    VL   +EEE K +S+  
Sbjct: 612 IDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNL 671

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLA+ Y LI        IR++KN+R+CGDCH   K  S +  R II+RD  RFHHF 
Sbjct: 672 HSEKLAICYGLIST-EAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFR 730

Query: 687 GGNCSCKDNW 696
            G CSC D W
Sbjct: 731 NGQCSCNDFW 740



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 210/452 (46%), Gaps = 80/452 (17%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG--GEIDKARWLFDRM 217
           +S ++ C+    LR+ KQ H  ++   +  + +  + L  + A      ++ AR +FD +
Sbjct: 35  ISLIDRCS---SLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEI 91

Query: 218 NNRNLVSWNLMISGYLKNGQP--------------KKC-------------------IDL 244
              N  +WN +I  Y     P               +C                   + L
Sbjct: 92  PQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSL 151

Query: 245 FQEMQLLGLNP---DEVTVSNILGAC-FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
            Q +  + +      +V V+N L  C F  G +D A ++F  IKEKD V W +MI G+ Q
Sbjct: 152 GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 211

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G  + AL LF +M SEDV+    ++  V+S+CAK+  L  G+ V        V+ +L +
Sbjct: 212 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTL 271

Query: 361 SSALIDMYCKCGVTDDA--------------WT-----------------VFNMMPTRNV 389
           ++A++DMY KCG  +DA              WT                 V N MP +++
Sbjct: 272 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDI 331

Query: 390 VSWNSMINGYAQNGQDLEALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           V+WN++I+ Y QNG+  EAL ++ +L LQ+N+K +  T VS LSAC      E G+    
Sbjct: 332 VAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGR-WIH 390

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S    +GI  +    + +I++  +  D++KA ++  S+  K +  +WS ++   AM G  
Sbjct: 391 SYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSV-EKRDVFVWSAMIGGLAMHG-- 447

Query: 509 KHGEMAARHLFELEPINAGPY-IMLSNMYAAC 539
             G  A    ++++  N  P  +  +N++ AC
Sbjct: 448 -CGSEAVDMFYKMQEANVKPNGVTFTNVFCAC 478



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 140/250 (56%), Gaps = 2/250 (0%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C ++ D+E  +R+ S+++ N    N T L N +L  Y K G +  A+ LFD M  +D ++
Sbjct: 244 CAKIRDLEFGRRVCSYIEENRVNVNLT-LANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDR 151
           W  +L  +A S   +  R + + MP +D V++N  I+ +   G   EAL VF  +Q +  
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +    T VS L+ACAQ+  L  G+ IH  I    +  N +V +AL  MY+K G+++KAR
Sbjct: 363 IKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAR 422

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ +  R++  W+ MI G   +G   + +D+F +MQ   + P+ VT +N+  AC  TG
Sbjct: 423 EVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTG 482

Query: 272 RIDDAGRLFH 281
            +D+A  LF+
Sbjct: 483 LVDEAESLFY 492



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 168/379 (44%), Gaps = 69/379 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  +   G +     +F  +  +D VS+N+ I GF  KG   +AL++F +M+
Sbjct: 167 DVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKME 226

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  + +  T V  L+ACA++ DL  G+++   I    +  N+ + NA+ DMY K G I+
Sbjct: 227 SEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIE 286

Query: 209 KARWLFDRMNN-------------------------------RNLVSWNLMISGYLKNGQ 237
            A+ LFD M                                 +++V+WN +IS Y +NG+
Sbjct: 287 DAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGK 346

Query: 238 PKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGR------------------------ 272
           P + + +F E+QL   +  +++T+ + L AC Q G                         
Sbjct: 347 PNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFYVTS 406

Query: 273 -----------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                      ++ A  +F+ ++++D   W+ MI G   +G   +A+ +F +M   +V+P
Sbjct: 407 ALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEANVKP 466

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGK-AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           +  + ++V  +C+    +   + +  K     G+  +    + ++D+  + G  + A   
Sbjct: 467 NGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLGRSGYLEKAVKF 526

Query: 381 FNMMPTRNVVS-WNSMING 398
              MP     S W +++  
Sbjct: 527 IEAMPIPPSTSVWGALLGA 545


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/635 (35%), Positives = 358/635 (56%), Gaps = 37/635 (5%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+H YA  G    AR  FD++P +D + W  ++    R G + + R L  + P R+ V
Sbjct: 144 NPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 203

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+ + IAG++  G   +A+  F+ M  D   P +   + AL+AC++L +L  G+ +H  +
Sbjct: 204 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLV 263

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKC 241
               +     +  AL DMYAK G+I +A+ +FD +   +    WN +I GY K       
Sbjct: 264 GQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCK------- 316

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +D A  LF  +  +D + + +MI GY  +
Sbjct: 317 ----------------------------LGHVDVARSLFDQMGARDVITFNSMITGYIHS 348

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+  DAL LF +M    +R D F++ S++++CA L +L HG+ +H       V++D+ + 
Sbjct: 349 GRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLG 408

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY KCG  D+A  VF+ M  R+V +W +MI G A NG   +AL  + ++ ++  +
Sbjct: 409 TALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQ 468

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P S T+++VL+AC H+ L + G+ HF+ + ++H + P ++HY CMI+LL RS  +D+A+ 
Sbjct: 469 PTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMH 528

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           L++++P +PN++IW ++LS C +  +I     AA HL +L P     Y+ L N+Y    +
Sbjct: 529 LVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQ 588

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W D   +R  M+ + VKK A YS I +  +VHKFV+ D++HP T  I   + ++  +L+ 
Sbjct: 589 WADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKS 648

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
            G+SP T  +  D  EEEK +++  HSEK+A+A+ LI  P  + PI I+KN+RVC DCH 
Sbjct: 649 VGYSPVTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSL-PIHIVKNLRVCEDCHS 707

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +K  S +  R II+RD +RFHHF  G CSC D W
Sbjct: 708 AIKLVSQLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 31/107 (28%)

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-------------------------------R 387
           LV++ LI MY   G+TDDA   F+ +P                                R
Sbjct: 141 LVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 200

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           NVVSW S+I GY++ G+  +A+  ++ +L + + PD    +  LSAC
Sbjct: 201 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSAC 247


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 374/663 (56%), Gaps = 41/663 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS-YNTAIA 129
           + GK  ++R    K    D+I  N+LL+ +A+ GS++D + LF++M  R SVS +N  IA
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIA 197

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
            +A  G   EA++++  M     EP+  T  S L+AC+ L  L +G++IH  I       
Sbjct: 198 AYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL 254

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           ++ ++NAL  MYA+   +D A  +F R+  R++VSW+ MI+ + +     + I+ + +MQ
Sbjct: 255 DLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQ 314

Query: 250 LLGLNPDEVTVSNILGACFQTG-----------------------------------RID 274
           L G+ P+  T +++L AC   G                                    +D
Sbjct: 315 LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLD 374

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVSSC 333
           +A  LF  I+ +D   WT +I GY++ G     L L+ EM +    P  K   S V+S+C
Sbjct: 375 EARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISAC 434

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L +    +  H      G+  D +++++L++MY + G  + A  VF+ M +R+ ++W 
Sbjct: 435 ASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWT 494

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           ++I GYA++G+   AL LY ++  E  +P   TF+ VL AC HA L E+G+  F SI + 
Sbjct: 495 TLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSD 554

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + + P++ HY+C+I+LL R+  +  A +LI ++P +PN + WS+LL    +  D+K    
Sbjct: 555 YAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATH 614

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  + +L+P++   Y++LSN++A  G    +AS+R++M ++ VKK    SWIE+ +++H
Sbjct: 615 AAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIH 674

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F   D +HP  + I+ EL +L  K++EAG+ P ++ VLHD  E+EK   +  HSEKLA+
Sbjct: 675 EFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAI 734

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI    G T +RI   +R+C DCH  +KF S I  R II+RDS+RFH F  G CSC 
Sbjct: 735 AFGLIATAPGTT-LRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCG 793

Query: 694 DNW 696
           D W
Sbjct: 794 DYW 796



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/505 (25%), Positives = 229/505 (45%), Gaps = 82/505 (16%)

Query: 46  QSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS 105
           Q H  ++       FL N ++  Y K G +  AR  FD +  ++  SW ++L+A+A++G 
Sbjct: 45  QIHDRISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGH 104

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
                                           R AL ++ RM     +P    + + L A
Sbjct: 105 Y-------------------------------RAALDLYKRMD---LQPNPVVYTTVLGA 130

Query: 166 CAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV- 223
           CA +  L  GK IH +I     L  +V + N+L  MYAK G ++ A+ LF+RM+ R  V 
Sbjct: 131 CASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVS 190

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR------ 272
           SWN MI+ Y ++G  ++ I L+++M    + P   T +++L AC        GR      
Sbjct: 191 SWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSACSNLGLLDQGRKIHALI 247

Query: 273 ------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                   +DDA ++F  +  +D V W+ MI  + +    ++A+
Sbjct: 248 SSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAI 307

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
             +++M  E VRP+ ++ +SV+ +CA +  L  G+ VH + +  G    L+  +AL+D+Y
Sbjct: 308 EFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLY 367

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTF 427
              G  D+A ++F+ +  R+   W  +I GY++ G     L LY ++      P +   +
Sbjct: 368 TSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIY 427

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
             V+SAC     F   +     I A  G+         ++N+  R  +++ A  +   + 
Sbjct: 428 SCVISACASLGAFADARQAHSDIEA-DGMISDFVLATSLVNMYSRWGNLESARQVFDKMS 486

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGE 512
            + ++L W+TL++     G  KHGE
Sbjct: 487 SR-DTLAWTTLIA-----GYAKHGE 505



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 205/452 (45%), Gaps = 62/452 (13%)

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
           +A  Q  DL   +QIH +I  G    NVF+ N +   Y K G +  AR  FD +  +N  
Sbjct: 32  DALRQCQDLESVRQIHDRIS-GAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDY 90

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------- 267
           SW  M++ Y +NG  +  +DL++ M    L P+ V  + +LGAC                
Sbjct: 91  SWGSMLTAYAQNGHYRAALDLYKRMD---LQPNPVVYTTVLGACASIEALEEGKAIHSRI 147

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNV-CWTTMIVGYTQNGKEED 306
                                + G ++DA RLF  +  + +V  W  MI  Y Q+G  E+
Sbjct: 148 SGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEE 207

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           A+ L+ +M   DV P   + +SV+S+C+ L  L  G+ +H      G + DL + +AL+ 
Sbjct: 208 AIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLT 264

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY +C   DDA  +F  +P R+VVSW++MI  +A+     EA+  Y K+  E ++P+ +T
Sbjct: 265 MYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYT 324

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           F SVL AC        G+   D I   +G   +L +   +++L      +D+A  L   +
Sbjct: 325 FASVLLACASVGDLRAGRAVHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQI 383

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY--IMLSNMYAACGRWED 544
            ++   L W+ L+   + +G   H         E++     P   I+ S + +AC     
Sbjct: 384 ENRDEGL-WTVLIGGYSKQG---HRTGVLELYREMKNTTKVPATKIIYSCVISACASLGA 439

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            A  R            A+S IE D  +  FV
Sbjct: 440 FADARQ-----------AHSDIEADGMISDFV 460



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 62/289 (21%)

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ + + ++  Y KCG    A   F+ +  +N  SW SM+  YAQNG    AL LY ++ 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT------------------- 457
             +L+P+   + +VL AC   +  E G+     IS   G+                    
Sbjct: 116 --DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 458 -------------PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                         S+  +  MI    +S   ++A+ L + +  +P+   ++++LS C+ 
Sbjct: 174 EDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSN 233

Query: 505 KGDIKHGE-----MAARHL-FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
            G +  G      +++R    +L   NA     L  MYA C   +D A I   +  ++V 
Sbjct: 234 LGLLDQGRKIHALISSRGTELDLSLQNA-----LLTMYARCKCLDDAAKIFQRLPRRDVV 288

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            ++A         +  F   D        +++E  +   K+Q  G  PN
Sbjct: 289 SWSAM--------IAAFAETD--------LFDEAIEFYSKMQLEGVRPN 321



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 91/180 (50%), Gaps = 6/180 (3%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYAR----DLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           P T  +++ ++   A  G    AR    D+     + D +   +L++ ++R G+++  R 
Sbjct: 421 PATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQ 480

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FDKM  RD++++ T IAG+A  G    AL ++  M+ +  EP++ T +  L AC+    
Sbjct: 481 VFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGL 540

Query: 172 LRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMI 229
             +GKQ+   I     +  N+   + + D+ ++ G +  A  L + M    N V+W+ ++
Sbjct: 541 QEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLL 600


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/647 (35%), Positives = 363/647 (56%), Gaps = 40/647 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+ + NAL+  +++ G +     +F K+P  D VS+N  I+G    G  + AL++  +M
Sbjct: 235 KDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQM 294

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRG--KQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +     P  +T  S L ACA          +QIHG ++      + ++  AL DMYAK G
Sbjct: 295 KSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYG 354

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D AR +F+ +  ++L+ WN +ISG    G   + + LF  M+  G + +  T++ +L 
Sbjct: 355 LLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLK 414

Query: 266 ACFQTGRIDDAGRLFHVIKEK-----------------------------------DNV- 289
           +      I D  ++ H + EK                                   DN+ 
Sbjct: 415 STASLEAISDTTQV-HALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNII 473

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            +T+MI   +Q    EDA+ LF EML + + PD F +SS++++CA L++   G+ VH   
Sbjct: 474 AFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHL 533

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +      D+   +AL+  Y KCG  +DA   F+ +P + VVSW++MI G AQ+G    AL
Sbjct: 534 IKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRAL 593

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            ++ +++ E + P+  T  SVL AC HA L +  + +F S+  + GI  + +HY+CMI+L
Sbjct: 594 DVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDL 653

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  +D A++L+ S+P + N+ +W  LL+   +  D + G++AA  LF LEP  +G +
Sbjct: 654 LGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTH 713

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++L+N YA+ G W++VA +R  MK   VKK  A SW+E+ ++VH F+  D++HP    IY
Sbjct: 714 VLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARDIY 773

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            +L +L   + +AG+ PN ++ LHD  + EK   + +HSE+LA+A+ LI  P G  PIR+
Sbjct: 774 AKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAG-APIRV 832

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R+C DCH+  KF S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 833 KKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/507 (26%), Positives = 233/507 (45%), Gaps = 47/507 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRM 147
           DI   NAL++ +   G V + R +FD+    R++VS+N  ++ F       +A+++F  M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                 P ++     +NAC    DL  G+++H  +V      +VF  NAL DMY+K G+I
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--- 264
             A  +F ++   ++VSWN  ISG + +G  +  ++L  +M+  GL P+  T+S+IL   
Sbjct: 254 HMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 265 -------------------GACFQT---------------GRIDDAGRLFHVIKEKDNVC 290
                               AC  +               G +DDA ++F  I  KD + 
Sbjct: 314 AGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLL 373

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I G +  G   ++L LF  M  E    ++ ++++V+ S A L ++     VH  A 
Sbjct: 374 WNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            +G   D  V + LID Y KC     A  VF    + N++++ SMI   +Q     +A+ 
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L+ ++L++ L+PD F   S+L+AC     +E+G+     +     +T      A ++   
Sbjct: 494 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNA-LVYTY 552

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-Y 529
            +   ++ A      LP K   + WS ++   A  G   HG+ A      +      P +
Sbjct: 553 AKCGSIEDADLAFSGLPDK-GVVSWSAMIGGLAQHG---HGKRALDVFRRMVDERIAPNH 608

Query: 530 IMLSNMYAAC---GRWEDVASIRSSMK 553
           I L+++  AC   G  ++     SSMK
Sbjct: 609 ITLTSVLCACNHAGLVDEAKGYFSSMK 635



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 147/544 (27%), Positives = 242/544 (44%), Gaps = 81/544 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LLS +++       R +FD+ P    VS+++ +  ++N    REAL  F  M+     
Sbjct: 41  NHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVR 100

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             ++     L  CA   D   G Q+H   V   L G++FV NAL  MY   G +D+AR +
Sbjct: 101 CNEFALPIVLK-CAP--DAGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRV 157

Query: 214 FDR-MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           FD    +RN VSWN M+S ++KN +    ++LF EM   G+ P+E   S ++ AC     
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 268 FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVG 297
            + GR                              I  A  +F  + + D V W   I G
Sbjct: 218 LEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISG 277

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS--SCAKLASLYHGQVVHGKAVVLGVD 355
              +G ++ AL L  +M S  + P+ F++SS++   + A   +   G+ +HG  +    D
Sbjct: 278 CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACAD 337

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D  +  AL+DMY K G+ DDA  VF  +P ++++ WN++I+G +  G   E+L+L+ ++
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 416 LQENLKPDSFTFVSVL--SACLHADLFERGQNH-----FDSISAVHGITPSLDHY----- 463
            +E    +  T  +VL  +A L A + +  Q H        +S  H +   +D Y     
Sbjct: 398 RKEGSDINRTTLAAVLKSTASLEA-ISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNC 456

Query: 464 -------------------ACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSV 501
                                MI  L +    + A+ L   +  K   P+  + S+LL+ 
Sbjct: 457 LRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA 516

Query: 502 CAMKGDIKHGEMAARHLFE---LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           CA     + G+    HL +   +  + AG  ++ +  YA CG  ED     S +  K V 
Sbjct: 517 CASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYT--YAKCGSIEDADLAFSGLPDKGVV 574

Query: 559 KFAA 562
            ++A
Sbjct: 575 SWSA 578



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/372 (28%), Positives = 174/372 (46%), Gaps = 39/372 (10%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G  IH  ++   L  + F RN L   Y+K      AR +FD   +   VSW+ +++ Y  
Sbjct: 23  GAHIHAHLLKSGLL-HAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 235 NGQPKKCIDLFQEMQLLGLN-------------PD------------------EVTVSNI 263
           N  P++ +  F+ M+  G+              PD                  ++ V+N 
Sbjct: 81  NALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVHAVAVSTGLSGDIFVANA 140

Query: 264 LGACFQT-GRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           L A +   G +D+A R+F    ++++ V W  M+  + +N +  DA+ LF EM+   VRP
Sbjct: 141 LVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRP 200

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           ++F  S VV++C     L  G+ VH   V  G D D+  ++AL+DMY K G    A  VF
Sbjct: 201 NEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVF 260

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             +P  +VVSWN+ I+G   +G D  AL L  ++    L P+ FT  S+L AC  A    
Sbjct: 261 GKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGA 320

Query: 442 RGQNHFDSISAVHGITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                      +     S D+    ++++  +   +D A  + + +P K + L+W+ L+S
Sbjct: 321 FALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRK-DLLLWNALIS 379

Query: 501 VCAMKGDIKHGE 512
            C+  G   HGE
Sbjct: 380 GCSHGG--CHGE 389



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 6/176 (3%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           SIS +++  A   SL+ G  +H   +  G+       + L+  Y KC +   A  VF+  
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGSARRVFDET 63

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           P    VSW+S++  Y+ N    EALA +  +    ++ + F    VL     A L    Q
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGV--Q 121

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            H  ++S   G++  +     ++ + G    VD+A  +        N++ W+ ++S
Sbjct: 122 VHAVAVST--GLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMS 175


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 347/610 (56%), Gaps = 32/610 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D    NAL+ A+ +   V+  R +FD + ++D VS+ +  + + N G  R  L VF  
Sbjct: 164 MSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCE 223

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  +  +P   T  S L AC++L DL+ G+ IHG  V   +  NVFV +AL  +YA+   
Sbjct: 224 MGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLS 283

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           + +AR +FD M +R++VSWN +++ Y  N +  K + LF +M   G+  DE T       
Sbjct: 284 VKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEAT------- 336

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                                   W  +I G  +NG+ E A+ +  +M +   +P++ +I
Sbjct: 337 ------------------------WNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITI 372

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           SS + +C+ L SL  G+ VH       +  DL   +AL+ MY KCG  + +  VF+M+  
Sbjct: 373 SSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICR 432

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           ++VV+WN+MI   A +G   E L L++ +LQ  +KP+S TF  VLS C H+ L E G   
Sbjct: 433 KDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQI 492

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F+S+   H + P  +HYACM+++  R+  + +A + I+ +P +P +  W  LL  C +  
Sbjct: 493 FNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYK 552

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           +++  +++A  LFE+EP N G Y+ L N+      W + +  R  MK + + K    SW+
Sbjct: 553 NVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWL 612

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY 626
           ++ ++VH FV  D+ + E++ IY  L +L +K++ AG+ P+T  VL D  +EEK +S+C 
Sbjct: 613 QVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCS 672

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLA+A+ ++   +G + IR+ KN+R+CGDCH  +K+ S ++G TII+RDS RFHHF 
Sbjct: 673 HSEKLAVAFGILNL-NGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFR 731

Query: 687 GGNCSCKDNW 696
            GNCSC+D W
Sbjct: 732 NGNCSCQDLW 741



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 147/284 (51%), Gaps = 12/284 (4%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ + L+  YA+   +  AR +FD MP RD++SWN +L+A+  +       ALF +M  
Sbjct: 268 VFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSS 327

Query: 119 R----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           +    D  ++N  I G    G + +A+++  +MQ   F+P   T  S L AC+ L  LR 
Sbjct: 328 KGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRM 387

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GK++H  +    L G++    AL  MYAK G+++ +R +FD +  +++V+WN MI     
Sbjct: 388 GKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAM 447

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNV 289
           +G  ++ + LF+ M   G+ P+ VT + +L  C  +  +++  ++F+ +      E D  
Sbjct: 448 HGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDAN 507

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            +  M+  +++ G+  +A      M  E   P   +  +++ +C
Sbjct: 508 HYACMVDVFSRAGRLHEAYEFIQRMPME---PTASAWGALLGAC 548



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 178/408 (43%), Gaps = 78/408 (19%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G+  +A+ LFD +   +  + + +IS +   G P + I L+  ++  G+ P       + 
Sbjct: 80  GDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVA 139

Query: 265 GACFQTGR-----------------------------------IDDAGRLFHVIKEKDNV 289
            AC  +G                                    ++ A R+F  +  KD V
Sbjct: 140 KACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVV 199

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WT+M   Y   G     L +F EM    V+P+  ++SS++ +C++L  L  G+ +HG A
Sbjct: 200 SWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFA 259

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V  G+ +++ V SAL+ +Y +C     A  VF++MP R+VVSWN ++  Y  N +  + L
Sbjct: 260 VRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGL 319

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           AL+ ++  + ++ D  T+ +V+  C+     E GQ                         
Sbjct: 320 ALFSQMSSKGVEADEATWNAVIGGCM-----ENGQT------------------------ 350

Query: 470 LGRSSDVDKAVDLIK---SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-N 525
                  +KAV++++   +L  KPN +  S+ L  C++   ++ G+    ++F    I +
Sbjct: 351 -------EKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGKEVHCYVFRHWLIGD 403

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
                 L  MYA CG   D+   R+       K   A++ + I N +H
Sbjct: 404 LTTMTALVYMYAKCG---DLNLSRNVFDMICRKDVVAWNTMIIANAMH 448


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/640 (35%), Positives = 368/640 (57%), Gaps = 39/640 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRF 152
           ++LL  +++ G + + R LFD    ++ +S+N+ I G++     R A ++  +MQ +D+ 
Sbjct: 338 SSLLDMYSKCGYLCEARVLFDTNE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKAR 211
           +  + T ++ L  C + +   + K+IHG  +  G +  +  V NA    YAK G +  A 
Sbjct: 397 KVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAE 456

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            +F  M ++ + SWN +I G+++NG P+K +DL+  M+  GL PD  T++++L AC    
Sbjct: 457 GVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLK 516

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           Q G+I  A   F  ++EK+ VCW TMI 
Sbjct: 517 SLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMIN 576

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G++QN    DAL +F++MLS  + PD+ SI   + +C+++++L  G+ +H  AV   + +
Sbjct: 577 GFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHLTE 636

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V+ +LIDMY KCG  + +  +F+ +  +  V+WN +I GY  +G   +A+ L+  + 
Sbjct: 637 HSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQ 696

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
               +PDS TF+++L+AC HA L   G  +   + ++ GI P L+HYAC++++LGR+  +
Sbjct: 697 NAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRL 756

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A++L+  LP KP+S IWS+LLS C    D+  GE  A  L EL P  A  Y+++SN Y
Sbjct: 757 NEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFY 816

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G+W++V  +R  MK   ++K A  SWIEI  KV +F+  D +  ++  I +   +L 
Sbjct: 817 ARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKIQQTWIELE 876

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK+ + G+ P+T  VLH+ +E+EK+K +  HSEKLA+++ L+    G T +R+ KN+R+C
Sbjct: 877 KKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTT-LRVCKNLRIC 935

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +K  S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 936 VDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/470 (27%), Positives = 217/470 (46%), Gaps = 76/470 (16%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           L+  ++ + S   +  ++    L+  C    ++E+ +++ + +  + +  N   L  RL+
Sbjct: 77  LQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLV 136

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             Y+     + +  +F+    +++  WNALLS + R+       +LF             
Sbjct: 137 TMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRN-------SLF------------- 176

Query: 127 AIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
                      R+A+ VF  M     F P ++T    + AC  + D+R G+ +HG  +  
Sbjct: 177 -----------RDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKT 225

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            +  +VFV NAL  MY K G ++ A  +FD+M  RNLVSWN ++   L+NG  ++   LF
Sbjct: 226 KVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLF 285

Query: 246 QEMQLL----GLNPDEVTVSNILGACFQTGRIDDAGRLFHVI------------------ 283
           +   LL    GL PD  T+  ++  C + G +   G +FH +                  
Sbjct: 286 K--GLLNGDEGLMPDVATMVTVIPLCARQGEV-RLGMVFHGLALKLGLCGELKVNSSLLD 342

Query: 284 -----------------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFS 325
                             EK+ + W +MI GY+++     A  L  +M  ED V+ ++ +
Sbjct: 343 MYSKCGYLCEARVLFDTNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVT 402

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           + +V+  C +       + +HG A+  G +  D LV++A +  Y KCG    A  VF  M
Sbjct: 403 LLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGM 462

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            ++ V SWN++I G+ QNG   +AL LY  +    L+PD FT  S+LSAC
Sbjct: 463 ESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSAC 512



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 94/204 (46%), Gaps = 16/204 (7%)

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG-KAVVLGVDDDLLVSSALIDMYC 369
            N+++S      K  I  ++  C +  ++  G+ +H   +      +D+++ + L+ MY 
Sbjct: 81  LNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYS 140

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFV 428
            C    D+  VFN    +N+  WN++++GY +N    +A+ ++ +++      PD+FT  
Sbjct: 141 ICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLP 200

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMINLLGRSSDVDKAVDL 482
            V+ AC+       G+       AVHG        +       +I + G+   V+ AV +
Sbjct: 201 CVIKACVGVYDVRLGE-------AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKV 253

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKG 506
              +P + N + W++++  C   G
Sbjct: 254 FDKMPQR-NLVSWNSVMYACLENG 276



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 114/261 (43%), Gaps = 47/261 (18%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C++V+ + L K L     +  +    +F+   L+  YAK G +  ++++FD++ L+  ++
Sbjct: 613 CSQVSALRLGKELHC-FAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVT 671

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN L                               I G+   G  R+A+++F  MQ   F
Sbjct: 672 WNVL-------------------------------ITGYGIHGHGRKAIELFKSMQNAGF 700

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKI-VVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            P   T ++ L AC     +  G +  G++  +  +   +     + DM  + G +++A 
Sbjct: 701 RPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEAL 760

Query: 212 WLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE----VTVSNIL 264
            L + + ++ +   W    S  L + +  + +D+ +++  +LL L PD+    V +SN  
Sbjct: 761 ELVNELPDKPDSRIW----SSLLSSCRNYRDLDIGEKVANKLLELGPDKAENYVLISNFY 816

Query: 265 GACFQTGRIDDAGRLFHVIKE 285
               + G+ D+  ++   +KE
Sbjct: 817 A---RLGKWDEVRKMRQRMKE 834


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/636 (36%), Positives = 352/636 (55%), Gaps = 37/636 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N+L++A+ + G V+    LFD++   D VS+N+ I G    GFS   L++F +M     E
Sbjct: 509  NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T VS L A A + +L  G+ +HG  V       V   N L DMY+K G ++ A  +
Sbjct: 569  VDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 628

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
            F +M +  +VSW   I+ Y++ G     I LF EMQ  G+ PD  TV++I+ AC      
Sbjct: 629  FVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688

Query: 269  ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                          + G +++A  +F  I  KD V W TMI GY
Sbjct: 689  DKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGY 748

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            +QN    +AL LF +M  +  +PD  +++ V+ +CA LA+L  G+ +HG  +  G   DL
Sbjct: 749  SQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL 807

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             V+ AL+DMY KCG+   A  +F+M+P ++++SW  MI GY  +G   EA++ ++++   
Sbjct: 808  HVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIA 867

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             ++PD  +F  +L+AC H+ L   G   F+S+    G+ P L+HYAC+++LL R  ++ K
Sbjct: 868  GIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSK 927

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A   I+S+P KP++ IW  LLS C +  D+K  E  A H+FELEP N   Y++L+N+YA 
Sbjct: 928  AYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAE 987

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              +WE+V  +R  M+ +  K+    SWIE+  K + FV+ +  HP+ + I   L KL  +
Sbjct: 988  AEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQ 1047

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            +Q   +    + VL +  + EK    C HSEK A+A+ ++  P G T +R+ KN RVCGD
Sbjct: 1048 MQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRT-VRVSKNQRVCGD 1106

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            CH   KF S    R I+LRDSNRFHHF  G CSC+D
Sbjct: 1107 CHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 199/410 (48%), Gaps = 39/410 (9%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  I  F   G  R A+++ ++ +   +E    ++ S L  CA+   L  GK++H  I+ 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKS--YELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             +  +  +   L  MY   G++ + R +FD++ N  +  WNL++S Y K G  ++ + L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 245 FQEMQLLGL-----------------------------------NPDEVTVSNILGACFQ 269
           F++MQ LG+                                     +   V++++ A F+
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G ++ A  LF  + E D V W +MI G   NG   + L +F +ML   V  D  ++ SV
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + + A + +L  G+ +HG  V     ++++ S+ L+DMY KCG  + A  VF  M    +
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSW S I  Y + G   +A+ L+D++  + ++PD +T  S++ AC  +   ++G++   S
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD-VHS 696

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
               +G+  +L     +IN+  +   V++A  +   +P K + + W+T++
Sbjct: 697 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMI 745



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 169/348 (48%), Gaps = 38/348 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            +++  N LL  +++ G++     +F KM     VS+ + IA +  +G   +A+ +F  M
Sbjct: 604 EEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q     P  YT  S ++ACA    L +G+ +H  ++   +G N+ V NAL +MYAK G +
Sbjct: 664 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 723

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++AR +F ++  +++VSWN MI GY +N  P + ++LF +MQ     PD++T++ +L AC
Sbjct: 724 EEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQ-KQFKPDDITMACVLPAC 782

Query: 268 FQTGRIDD-----------------------------------AGRLFHVIKEKDNVCWT 292
                +D                                    A  LF +I +KD + WT
Sbjct: 783 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 842

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVV 351
            MI GY  +G   +A+  FNEM    + PD+ S S ++++C+    L  G +  +     
Sbjct: 843 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNE 902

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            GV+  L   + ++D+  + G    A+     MP + +   W  +++G
Sbjct: 903 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSG 950



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 141/279 (50%), Gaps = 33/279 (11%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
            D + S+G        T +V  C   + ++  + + S++  N    N   + N L++ YA
Sbjct: 660 FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLP-VTNALINMYA 718

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G +  AR +F K+P++DI+SW                               NT I G
Sbjct: 719 KCGSVEEARLVFSKIPVKDIVSW-------------------------------NTMIGG 747

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           ++      EAL++F  MQK +F+P D T    L ACA L  L +G++IHG I+      +
Sbjct: 748 YSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSD 806

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V  AL DMYAK G +  A+ LFD +  ++L+SW +MI+GY  +G   + I  F EM++
Sbjct: 807 LHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRI 866

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
            G+ PDE + S IL AC  +G +++  + F+ ++ +  V
Sbjct: 867 AGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGV 905


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 246/727 (33%), Positives = 390/727 (53%), Gaps = 46/727 (6%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +A DT+  R   A    ++ +VL+  +         + S M     EP++  + + +   
Sbjct: 156 KAFDTMPIRDVVA----WSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLS-VTEA 210

Query: 69  YAKSGKLFYARDLFDKMPLRDIISW----NALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
            ++ G L   R +   +  R+I S     N+L+  + + G +     LF+ +P R +  +
Sbjct: 211 CSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPW 270

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              I+ +   G  +EAL VF++MQ+ + EP   T V  L ACA+L  ++ G+ +HG ++ 
Sbjct: 271 TPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIR 330

Query: 185 GNLGGNV-FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
             +   + F+  AL ++YA  G +     +F+ +  + ++SWN +IS + +NGQP++ + 
Sbjct: 331 RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 390

Query: 244 LFQEMQLLGLNPDEV----------TVS------NILGACFQTGRIDD------------ 275
           LF +MQ  GL PD            T+S       I G   +TG  +D            
Sbjct: 391 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAK 450

Query: 276 ------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
                 A ++F  IKEK  V W +MI G++QNG   +A+ LF++M    V+ DK +  SV
Sbjct: 451 CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 510

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +C+ L  L  G+ VH K ++ G+  D  + +AL DMY KCG    A  VF+ M  R++
Sbjct: 511 IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 570

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSW+ MI GY  +GQ    ++L++++L   +KP+  TF+ +LSAC HA   E G+ +F+S
Sbjct: 571 VSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS 630

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +S   G+ P  DH+ACM++LL R+ D++ A  +I SLP   NS IW  LL+ C +   I 
Sbjct: 631 MSEF-GVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRID 689

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
             +   ++L +++  + G Y +LSN+YA  G W+    +RS MKSK ++K   YS IEID
Sbjct: 690 IIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 749

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
            K+++F   D +H +T+ IY  L      +    +       +  T +  K  ++  HSE
Sbjct: 750 KKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSE 809

Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
           KLA+A+ +I    G T +RI KN+RVC DCH F K AS I GR II+RD NRFH F  G+
Sbjct: 810 KLAIAFGIINTRPGTT-LRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGS 868

Query: 690 CSCKDNW 696
           CSC D W
Sbjct: 869 CSCNDYW 875



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 250/506 (49%), Gaps = 72/506 (14%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D +   +LL  +     + D    FD MPIRD V++++ +  F   G + E L +FS+M 
Sbjct: 134 DAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMI 193

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  EP   T +S   AC++L  LR G+ +HG +V   +  N  + N+L  MY K G++ 
Sbjct: 194 SEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLY 253

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LF+ +  R    W  MIS Y ++G  ++ +++F +MQ   + P++VT+  +L AC 
Sbjct: 254 SAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACA 313

Query: 269 QTGRID------------------------------------DAGRLFHVIKEKDNVCWT 292
           + GR+                                     D  ++F  IKEK  + W 
Sbjct: 314 RLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWN 373

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+I  +T+NG+ E+AL+LF +M ++ + PD +S++S +S+C  ++    G  +HG  +  
Sbjct: 374 TLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKT 433

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  +D  V +ALIDMY KCG    A  +F  +  +++V+WNSMI G++QNG  +EA+ L+
Sbjct: 434 GNFND-FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLF 492

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQ--------------NHFDS--------- 449
           D++    +K D  TF+SV+ AC H    E+G+              ++ D+         
Sbjct: 493 DQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKC 552

Query: 450 --ISAVHGI-----TPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLL 499
             +   HG+       S+  ++ MI   G    ++  + L   +     KPN + +  +L
Sbjct: 553 GELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHIL 612

Query: 500 SVCAMKGDIKHGEMAARHL--FELEP 523
           S C+  G ++ G++    +  F +EP
Sbjct: 613 SACSHAGAVEEGKLYFNSMSEFGVEP 638



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 125/534 (23%), Positives = 241/534 (45%), Gaps = 74/534 (13%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEP 154
           L+ ++A+ G  +  + +FD  P  DS  +   I  +   GF  EA+ ++  M  +D+ + 
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 98

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           +++   S L AC+   DL  G ++HG+++      +  V  +L  MY +   +D A   F
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D M  R++V+W+ ++  +++NGQ  + +D+F +M    + PD VT+ ++  AC + G + 
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 275 -----------------------------------DAGRLFHVIKEKDNVCWTTMIVGYT 299
                                               A RLF  +  +    WT MI  Y 
Sbjct: 219 LGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYN 278

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL- 358
           Q+G  ++AL +F +M    + P++ ++  V+ +CA+L  +  G+ VHG  +   +D +L 
Sbjct: 279 QSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD 338

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            +  AL+++Y   G   D   VF  +  + ++SWN++I+ + +NGQ  EAL L+ ++  +
Sbjct: 339 FLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQ 398

Query: 419 NLKPD------------SFTFVSVLSACLHADLFERG------QNHFDSISAVHGIT--- 457
            L PD            + +F S L A +H  + + G      QN    + A  G     
Sbjct: 399 GLMPDSYSLASSLSACGTISF-SQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSA 457

Query: 458 ---------PSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMK 505
                     SL  +  MI    ++    +A+ L   +     K + L + +++  C+  
Sbjct: 458 NKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHL 517

Query: 506 GDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV 557
           G ++ G+    H   +  +    Y+   L++MY+ CG  +    +   M  +++
Sbjct: 518 GYLEKGKW-VHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 570



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 166/376 (44%), Gaps = 57/376 (15%)

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+H  + +  L  +      L + YA+ G  + ++ +FD     +   W ++I  Y+  G
Sbjct: 19  QLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGG 78

Query: 237 QPKKCIDLFQEMQL------------------------------------LGLNPDEVTV 260
             ++ + L+ EM                                       G   D V  
Sbjct: 79  FFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVE 138

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           +++L    +   +DDA + F  +  +D V W+++++ + QNG+  + L +F++M+SE V 
Sbjct: 139 TSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVE 198

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           PD  ++ SV  +C++L SL  G+ VHG  V   ++ +  ++++LI MY K G    A  +
Sbjct: 199 PDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +P R    W  MI+ Y Q+G   EAL ++ K+ +  ++P+  T V VL AC      
Sbjct: 259 FENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRV 318

Query: 441 ERGQNHFDSISAVHGIT------PSLDHYACMINLL----GRSSDVDKAVDLIKSLPHKP 490
           + G+       +VHG        P LD     +  L    G   D  K  + IK    + 
Sbjct: 319 KEGR-------SVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK----EK 367

Query: 491 NSLIWSTLLSVCAMKG 506
             L W+TL+S+    G
Sbjct: 368 TILSWNTLISIFTRNG 383



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 159/355 (44%), Gaps = 42/355 (11%)

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           + GL+      + ++ +  Q G  + + R+F    + D+  W  +I  Y   G  E+A+ 
Sbjct: 26  ITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVS 85

Query: 310 LFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
           L++EM+ +D  +   F   SV+ +C+    L  G  VHG+ +  G + D +V ++L+ MY
Sbjct: 86  LYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMY 145

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            +    DDA   F+ MP R+VV+W+S++  + QNGQ  E L ++ +++ E ++PDS T +
Sbjct: 146 GEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTML 205

Query: 429 SVLSACLHADLFERGQNHFDSISAVHG------ITPSLDHYACMINLLGRSSDVDKAVDL 482
           SV  AC        G+       +VHG      I  +      +I + G+  D+  A  L
Sbjct: 206 SVTEACSELGSLRLGR-------SVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERL 258

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHG--EMAARHLFELEPINAGPYIMLSNMYAACG 540
            +++P +  +  W+ ++S     G  +      A    F++EP      + +  +  AC 
Sbjct: 259 FENVPCRMTA-PWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQ----VTMVGVLCACA 313

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           R   V   RS                     VH FV      PE + +   L +L
Sbjct: 314 RLGRVKEGRS---------------------VHGFVIRRAMDPELDFLGPALMEL 347


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/645 (35%), Positives = 361/645 (55%), Gaps = 38/645 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R G+V+    +F  MP+RD  S+N  I+GF   G   EAL+V  RM+
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +    T  S L  CAQ  D+  G  +H  ++   L  +VFV NAL +MY+K G + 
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV---SNILG 265
            A+ +FD M  R+LVSWN +I+ Y +N  P   +  F+EM  +G+ PD +TV   ++I G
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 266 AC---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G ID A  +F  +  +D + W 
Sbjct: 361 QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWN 420

Query: 293 TMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T+I GY QNG   +A+  +N M     + P++ +  S++ + + + +L  G  +HG+ + 
Sbjct: 421 TLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIK 480

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ V++ LIDMY KCG  +DA ++F  +P    V WN++I+    +G   +AL L
Sbjct: 481 NCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQL 540

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  +  + +K D  TFVS+LSAC H+ L +  Q  FD++   + I P+L HY CM++L G
Sbjct: 541 FKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFG 600

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  ++KA +L+ ++P + ++ IW TLL+ C + G+ + G  A+  L E++  N G Y++
Sbjct: 601 RAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASDRLLEVDSENVGYYVL 660

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G+WE    +RS  + + ++K   +S + + + V  F + +++HP+   IYEE
Sbjct: 661 LSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVVGSVVEVFYAGNQSHPQCAEIYEE 720

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L  L  K++  G+ P+   VL D +E+EK + +  HSE+LA+ + +I  P   +PIRI K
Sbjct: 721 LRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHSERLAIVFGIISTPPK-SPIRIFK 779

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   K+ S I  R II+RDSNRFHHF  G CSC D W
Sbjct: 780 NLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGICSCGDYW 824



 Score =  195 bits (495), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 146/525 (27%), Positives = 247/525 (47%), Gaps = 91/525 (17%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           CT +N   +AK+L + + L   +     L  +L+  YA  G L  +   F  +  ++I S
Sbjct: 61  CTNIN---VAKQLHALL-LVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFS 116

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+++SA+ R G  +D           D V+   +++G                      
Sbjct: 117 WNSMVSAYVRRGRYRD---------SMDCVTELLSLSGV--------------------- 146

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  YT    L AC  L D   G+++H  ++      +V+V  +L  +Y++ G ++ A  
Sbjct: 147 RPDFYTFPPVLKACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHK 203

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-- 270
           +F  M  R++ SWN MISG+ +NG   + + +   M+   +  D VTVS++L  C Q+  
Sbjct: 204 VFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSND 263

Query: 271 ---------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            GR+ DA R+F  ++ +D V W ++I  
Sbjct: 264 VVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAA 323

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDD 356
           Y QN     AL  F EML   +RPD  ++ S+ S   +L+    G+ VHG  V    ++ 
Sbjct: 324 YEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEV 383

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D+++ +AL++MY K G  D A  VF  +P+R+V+SWN++I GYAQNG   EA+  Y+ + 
Sbjct: 384 DIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMME 443

Query: 417 Q-ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHY--ACMINL 469
           +   + P+  T+VS+L A  H    ++G         +HG        LD +   C+I++
Sbjct: 444 EGRTIVPNQGTWVSILPAYSHVGALQQGMK-------IHGRLIKNCLFLDVFVATCLIDM 496

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            G+   ++ A+ L   +P +  S+ W+ ++S   + G   HGE A
Sbjct: 497 YGKCGRLEDAMSLFYEIPQE-TSVPWNAIISSLGIHG---HGEKA 537



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 189/408 (46%), Gaps = 50/408 (12%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            KQ+H  ++V     +V +   L  +YA  G++  +   F  +  +N+ SWN M+S Y++
Sbjct: 67  AKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAYVR 126

Query: 235 NGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF------------------------- 268
            G+ +  +D   E+  L G+ PD  T   +L AC                          
Sbjct: 127 RGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMHCWVLKMGFEHDVYVAA 186

Query: 269 -------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                  + G ++ A ++F  +  +D   W  MI G+ QNG   +AL + + M +E+V+ 
Sbjct: 187 SLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKM 246

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  ++SS++  CA+   +  G +VH   +  G++ D+ VS+ALI+MY K G   DA  VF
Sbjct: 247 DTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVF 306

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + M  R++VSWNS+I  Y QN   + AL  + ++L   ++PD  T VS+  A +   L +
Sbjct: 307 DGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL--ASIFGQLSD 364

Query: 442 RGQNHFDSISAVHGITPSLDHYA-------CMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
           R         AVHG                 ++N+  +   +D A  + + LP + + + 
Sbjct: 365 RRIGR-----AVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR-DVIS 418

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACG 540
           W+TL++  A  G       A   + E   I  N G ++ +   Y+  G
Sbjct: 419 WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVG 466



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 199/424 (46%), Gaps = 71/424 (16%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C + NDV     +  ++  +  E +  F+ N L++ Y+K G+L  A+ +FD M +RD++S
Sbjct: 258 CAQSNDVVGGVLVHLYVIKHGLESDV-FVSNALINMYSKFGRLQDAQRVFDGMEVRDLVS 316

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN++++A+ ++             P+       TA+      GF +E L V  R      
Sbjct: 317 WNSIIAAYEQNDD-----------PV-------TAL------GFFKEMLFVGMR------ 346

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKAR 211
            P   T VS  +   QL D R G+ +HG +V    L  ++ + NAL +MYAK G ID AR
Sbjct: 347 -PDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCAR 405

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGA---- 266
            +F+++ +R+++SWN +I+GY +NG   + ID +  M+    + P++ T  +IL A    
Sbjct: 406 AVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHV 465

Query: 267 ----------------CF---------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                           C                + GR++DA  LF+ I ++ +V W  +I
Sbjct: 466 GALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAII 525

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVVLGV 354
                +G  E AL LF +M ++ V+ D  +  S++S+C+    +   Q           +
Sbjct: 526 SSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRI 585

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYD 413
             +L     ++D++ + G  + A+ + + MP +   S W +++     +G         D
Sbjct: 586 KPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNAELGTFASD 645

Query: 414 KLLQ 417
           +LL+
Sbjct: 646 RLLE 649


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/631 (33%), Positives = 363/631 (57%), Gaps = 38/631 (6%)

Query: 70  AKSGKLFYARDLFDKMPL----RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           A SG L  A+ + D        +D++  NAL+    +   V   R +FD M ++D VS+ 
Sbjct: 88  AASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWT 147

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
           +    + N G  R+ + +F  M  +       T  S L ACA  + L  G+++HG I+  
Sbjct: 148 SMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGFILRN 205

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            + GNV+V +AL +MYA    + +AR +FD M +R++VSWN+M++ Y  N + ++ + LF
Sbjct: 206 EMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLF 265

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
            +M+  G+  ++ +                               W   I G  QNG+ E
Sbjct: 266 HQMRKEGIKLNQAS-------------------------------WNAAISGCMQNGQHE 294

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
            AL +  +M    ++P++ +I S +  C  L SL  G+ +HG        +D+ +++AL+
Sbjct: 295 LALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALV 354

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
            +Y KCG  + +  VFN MP ++VV+WN+MI   + +G+  E+L L++K+L   ++P+S 
Sbjct: 355 LLYAKCGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSV 414

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+ VLS C H+ L + G   F+S+S+ H ITP  DHY+CM+++L R+  +++A D I+ 
Sbjct: 415 TFIGVLSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRK 474

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +P +  W  LL  C +  +++ G +AA  LFE+EP NAG Y++LSN+     +W + 
Sbjct: 475 MPIEPTAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEA 534

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           + IR  M+ K + K    SW+++ NKV+ FV+ D+++ + ++IY  L ++ +K++  G+ 
Sbjct: 535 SEIRKMMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQ 594

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           PNT  VL +  +E++ +++C HSE+LA+A+ ++    G T +R+ KN+R+CGDCH  +K 
Sbjct: 595 PNTDFVLQNVDQEQREETLCSHSERLAVAFGILNSS-GKTTVRVFKNLRICGDCHNAIKL 653

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + I+G  II+RDS RFHHF  G C+C D W
Sbjct: 654 IAKIVGMQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 146/288 (50%), Gaps = 10/288 (3%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           ++L + +   +  N  E N  ++ + L++ YA S  L  AR +FD M  RDI+SWN +L+
Sbjct: 192 IKLGREVHGFILRNEMEGNV-YVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLT 250

Query: 99  AHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           A+  +   +    LF +M       +  S+N AI+G    G    AL +  +MQ    +P
Sbjct: 251 AYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKP 310

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
              T VSAL  C  L  LR GK+IHG +       +V +  AL  +YAK G+++ +R +F
Sbjct: 311 NRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVF 370

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           + M  +++V+WN MI     +G+  + + LF +M   G+ P+ VT   +L  C  +   D
Sbjct: 371 NTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLAD 430

Query: 275 DAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +   +F+ +  + ++      ++ M+   ++ G+ E+A     +M  E
Sbjct: 431 EGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIE 478



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 133/255 (52%), Gaps = 16/255 (6%)

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++  C  +G +  A  LF  I E D   WT +I G+TQ+G  + A+ +++ +LS +VRPD
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPD 76

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           KF + SV  +CA    L   + +H  A+  G + DL++ +ALIDM+ KC   + A  VF+
Sbjct: 77  KFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFD 136

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M  ++VVSW SM   Y   G   + + L+ ++    ++ +S T  S+L AC  AD  + 
Sbjct: 137 DMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC--ADYIKL 194

Query: 443 GQNHFDSISAVHG------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           G+        VHG      +  ++   + ++N+   S  + +A  +  S+ H+ + + W+
Sbjct: 195 GRE-------VHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHR-DIVSWN 246

Query: 497 TLLSVCAMKGDIKHG 511
            +L+   +  + + G
Sbjct: 247 VMLTAYFLNKEYERG 261



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 6/183 (3%)

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           S  LI      G    A  +F+ +P  ++ +W  +I+G+ Q+G   +A+ +Y  LL  N+
Sbjct: 14  SIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNV 73

Query: 421 KPDSFTFVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +PD F  +SV  AC    DL    + H D+I    G    L     +I++ G+   V+ A
Sbjct: 74  RPDKFVLLSVAKACAASGDLVVAKKIHDDAIQ--FGFNKDLVLGNALIDMFGKCKFVNGA 131

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             +   +  K + + W+++       G  + G +  R +  L  I A   + +S++  AC
Sbjct: 132 RCVFDDMVVK-DVVSWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANS-LTVSSILPAC 188

Query: 540 GRW 542
             +
Sbjct: 189 ADY 191


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/640 (35%), Positives = 352/640 (55%), Gaps = 38/640 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LLS ++ +G  +D   +F +MP RD +S+N+ +A +   G    AL+VF+ M   + E
Sbjct: 300 NTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKE 359

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  SAL AC        GK +HG +VV  L   + + N L   Y K  ++ +A+ +
Sbjct: 360 INYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKV 419

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACF---- 268
           F RM   + V+WN +I G+  N +  + +  F+ M+    +  D +T+ NILG+C     
Sbjct: 420 FQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHED 479

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G +  +  +F  +  K +  W  +I 
Sbjct: 480 LIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIA 539

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              + G  E+AL L   M S  +  D+F+ S+ +S  A LA L  GQ +HG  + LG + 
Sbjct: 540 ANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFEL 599

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D  + +A +DMY KCG  DDA  +      R+ +SWN++I+  A++GQ  +A   +  +L
Sbjct: 600 DHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDML 659

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +  +KP+  +FV +LSAC H  L + G  ++ S+++V+GI P ++H  CMI+LLGRS  +
Sbjct: 660 KLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRL 719

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A   I  +P  PN L+W +LL+ C +  ++  G  AA+HL EL+P +   Y++ SN++
Sbjct: 720 VEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVF 779

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  GRWEDV  +R  M +  ++K  A+SW++    +  F   D+THP+ E I  +L  L+
Sbjct: 780 ATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLGLM 839

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           K + EAG+ P+T   L DT EE+K  ++  HSE++ALA+ LI  P G T +RI KN+RVC
Sbjct: 840 KIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGST-VRIFKNLRVC 898

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH F KF S ++GR I+LRD  RFHHF  GNCSC D W
Sbjct: 899 GDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/482 (24%), Positives = 228/482 (47%), Gaps = 39/482 (8%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +++ G +   + +FD+M  R+  S+N  ++G+   G   EA+  F  +     +P+ +  
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 160 VSALNACAQL-LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            S + AC +  +  + G Q HG  +   L  +VFV  +    YA  G +  A+ +F+ M 
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
           +RN+VSW  ++  Y  NG  K+ I+ ++ M+  G+  +E  ++ ++ +C           
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 268 ---------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                     +T               G I++A  +F+ + E+D + W ++I    QN  
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E++   F+ M       +  ++S ++S C  +  L  G+ VHG AV  G++ ++ + + 
Sbjct: 242 HEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNT 301

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ +Y   G + DA  +F  MP R+++SWNSM+  Y Q+G+ L AL ++ ++L    + +
Sbjct: 302 LLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEIN 361

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF S L+ACL  + F  G+        V G+   L     +I   G+   + +A  + 
Sbjct: 362 YVTFTSALAACLDPEFFTNGKI-LHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVF 420

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P K + + W+ L+   A   ++    +AA  L      +   YI + N+  +C   E
Sbjct: 421 QRMP-KLDKVTWNALIGGFANNAELNEA-VAAFKLMREGSTSGVDYITIVNILGSCLTHE 478

Query: 544 DV 545
           D+
Sbjct: 479 DL 480



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/486 (25%), Positives = 223/486 (45%), Gaps = 72/486 (14%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+    +HFYA  G +  A+ +F++MP R+++SW +L+ +++ +GS             
Sbjct: 94  VFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGS------------- 140

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                              +E +  + RM+ +     +      +++C  L+D+  G Q+
Sbjct: 141 ------------------KKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQL 182

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            G  +   L   V   N+L  M+   G+I++A  +F+ MN R+ +SWN +IS   +N   
Sbjct: 183 LGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLH 242

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---------------------------- 270
           ++    F  M+L+    +  T+S +L  C                               
Sbjct: 243 EESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTL 302

Query: 271 -------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  GR  DA  +F  + E+D + W +M+  Y Q+G+   AL +F EML      + 
Sbjct: 303 LSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINY 362

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            + +S +++C       +G+++HG  VVLG+ D+L++ + LI  Y KC    +A  VF  
Sbjct: 363 VTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQR 422

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACL-HADLF 440
           MP  + V+WN++I G+A N +  EA+A + KL++E      D  T V++L +CL H DL 
Sbjct: 423 MPKLDKVTWNALIGGFANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTHEDLI 481

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G     + + V G        + +I +  +  D+  +  +   L  K +S +W+ +++
Sbjct: 482 KYGIP-IHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSS-VWNAIIA 539

Query: 501 VCAMKG 506
             A  G
Sbjct: 540 ANARYG 545



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 195/392 (49%), Gaps = 72/392 (18%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY+K G I+ A+ +FDRM+ RN  SWN M+SGY++ G   + +  F+++  +G+ P    
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 260 VSNILGAC----------FQ--------------------------TGRIDDAGRLFHVI 283
           +++++ AC          FQ                           G + +A ++F+ +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            +++ V WT+++V Y+ NG +++ +  +  M  E +  ++ +I+ V+SSC  L  +  G 
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            + G A+  G++  +  +++LI M+  CG  ++A ++FN M  R+ +SWNS+I+  AQN 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 404 QDLEALALYD--KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP--S 459
              E+   +   +L+ E +   + +   +LS C   D  + G+        VHG+     
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSI--LLSICGSVDYLKWGK-------GVHGLAVKYG 291

Query: 460 LDHYACMIN-LLGRSSDVDKAVD---LIKSLPHKPNSLIWSTLLS--------VCAMKGD 507
           L+   C+ N LL   SD  ++ D   + + +P + + + W+++L+        +CA+K  
Sbjct: 292 LESNICLCNTLLSVYSDAGRSKDAELIFRRMPER-DLISWNSMLACYVQDGRCLCALK-- 348

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
                + A  L+  + IN   Y+  ++  AAC
Sbjct: 349 -----VFAEMLWMKKEIN---YVTFTSALAAC 372



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/419 (22%), Positives = 162/419 (38%), Gaps = 92/419 (21%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLH---------------NRLLHFYAKSGKLFYAR 79
            +N V     L + +D  F+  N   LH               N L+ FY K  K+  A+
Sbjct: 359 EINYVTFTSALAACLDPEFF-TNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAK 417

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +F +MP  D ++WNAL                               I GFAN     E
Sbjct: 418 KVFQRMPKLDKVTWNAL-------------------------------IGGFANNAELNE 446

Query: 140 ALQVFSRMQKDRFEPTDY-THVSALNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNAL 197
           A+  F  M++      DY T V+ L +C    DL + G  IH   VV     +  V+++L
Sbjct: 447 AVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFDLDQHVQSSL 506

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MYAK G++  + ++FD++  +    WN +I+   + G  ++ + L   M+  G+  D+
Sbjct: 507 ITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRMRSAGIEFDQ 566

Query: 258 VTVSNIL--------------------------------------GACFQTGRIDDAGRL 279
              S  L                                      G C   G +DDA R+
Sbjct: 567 FNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKC---GELDDALRI 623

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
                ++  + W T+I    ++G+   A   F++ML   V+P+  S   ++S+C+    +
Sbjct: 624 LPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLV 683

Query: 340 YHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMI 396
             G   +     V G+   +     +ID+  + G   +A      MP   N + W S++
Sbjct: 684 DEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLL 742


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 330/571 (57%), Gaps = 38/571 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           LN C     +R G+++H  ++       V++   L  +Y K   +  AR +FD M  RN+
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
           VSW  MISGY + G   + + LF +M      P+E T + +L +C               
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSH 136

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + GRI +A  +F  + E+D V  T +I GY Q G +E+A
Sbjct: 137 IFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEA 196

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF  +  E +  +  + +S++++ + LA+L HG+ VH   +   +   +++ ++LIDM
Sbjct: 197 LELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDM 256

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFT 426
           Y KCG  + A  +FN MP R V+SWN+M+ GY+++G+ +E + L+  + +EN +KPDS T
Sbjct: 257 YSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVT 316

Query: 427 FVSVLSACLHADLFERGQNHFDSI-SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           F++VLS C H  L ++G   FD + +    I   ++HY C+I+LLGR+  V++A +LIK 
Sbjct: 317 FLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKK 376

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +P + IW +LL  C +  +   GE     L E+EP NAG Y++LSN+YA+ GRWEDV
Sbjct: 377 MPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDV 436

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
            ++R  M  K V K    SWIE+D  +H F + DR+HP  E ++ ++ +L+ K +E+G+ 
Sbjct: 437 RNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYV 496

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VL+D  EE+K K +  HSEKLALA+ LI    GV P+R++KN+R+C DCH F KF
Sbjct: 497 PDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGV-PLRVIKNLRICVDCHNFAKF 555

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S + GR + +RD NRFHH  GG CSC D W
Sbjct: 556 VSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 193/424 (45%), Gaps = 79/424 (18%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           +G     + Y  L+ +C     V   +R+ +HM    Y P   +L  RL+  Y K   L 
Sbjct: 4   QGPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLP-PVYLSTRLIILYTKCECLG 62

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            AR +FD+M  R+                             R+ VS+   I+G++ +GF
Sbjct: 63  CARHVFDEM--RE-----------------------------RNVVSWTAMISGYSQRGF 91

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
           + EAL +F +M +   EP ++T  + L++C        G+QIH  I   N   ++FV ++
Sbjct: 92  ASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSS 151

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMYAK G I +AR +F+ +  R++VS   +ISGY + G  ++ ++LF  +Q  G++ +
Sbjct: 152 LLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSN 211

Query: 257 EVTVSNILGAC-----------------------------------FQTGRIDDAGRLFH 281
            VT +++L A                                     + G ++ A ++F+
Sbjct: 212 YVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFN 271

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCA------ 334
            +  +  + W  M+VGY+++GK  + + LF  M  E+ V+PD  +  +V+S C+      
Sbjct: 272 NMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLED 331

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WN 393
           K   ++   +  G  +  G++        +ID+  + G  ++A+ +   MP     + W 
Sbjct: 332 KGLEMFDEMMNGGDEIEAGIEH----YGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWG 387

Query: 394 SMIN 397
           S++ 
Sbjct: 388 SLLG 391



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 134/283 (47%), Gaps = 44/283 (15%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +++ D +++  +++ C    ++  GQ VH   +       + +S+ LI +Y KC     A
Sbjct: 7   EIKFDGYNM--LLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCA 64

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC--- 434
             VF+ M  RNVVSW +MI+GY+Q G   EAL L+ ++L+ + +P+ FTF +VLS+C   
Sbjct: 65  RHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGF 124

Query: 435 --------LHADLFERG-QNHF-------------DSISAVHGI---TPSLDHYAC--MI 467
                   +H+ +F+R  +NH                I    G+    P  D  +C  +I
Sbjct: 125 SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 184

Query: 468 NLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-P 523
           +   +    ++A++L   L  +    N + +++LL+  +    + HG+    H+   E P
Sbjct: 185 SGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP 244

Query: 524 INAGPYIMLSN----MYAACGRWEDVASIRSSMKSKNVKKFAA 562
                Y++L N    MY+ CG       I ++M  + V  + A
Sbjct: 245 F----YVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNA 283



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 12/142 (8%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYA 70
           L   G ++    Y  L+   + +  ++  K++ SH+   +L FY      L N L+  Y+
Sbjct: 203 LQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFY----VVLQNSLIDMYS 258

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-----DSVSYN 125
           K G L YAR +F+ MP+R +ISWNA+L  +++ G   ++  LF  M        DSV++ 
Sbjct: 259 KCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFL 318

Query: 126 TAIAGFANKGFSREALQVFSRM 147
             ++G ++ G   + L++F  M
Sbjct: 319 AVLSGCSHGGLEDKGLEMFDEM 340


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/646 (33%), Positives = 364/646 (56%), Gaps = 72/646 (11%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +++ + I  F ++    +AL  F  M+     P      S L +C  ++DLR G+ +HG 
Sbjct: 71  LAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGF 130

Query: 182 IVVGNLGGNVFVRNALTDMYAK------------------------GGE----------- 206
           IV   +  +++  NAL +MYAK                        G E           
Sbjct: 131 IVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPF 190

Query: 207 -IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL- 264
            ID  R +F+ M  +++VS+N +I+GY ++G  +  + + +EM    L PD  T+S++L 
Sbjct: 191 GIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLP 250

Query: 265 ---------------GACFQTG-------------------RIDDAGRLFHVIKEKDNVC 290
                          G   + G                   RI+D+ R+F  +  +D + 
Sbjct: 251 IFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGIS 310

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W +++ GY QNG+  +AL LF +M++  V+P   + SSV+ +CA LA+L+ G+ +HG  +
Sbjct: 311 WNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVL 370

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G   ++ ++SAL+DMY KCG    A  +F+ M   + VSW ++I G+A +G   EA++
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVS 430

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L++++ ++ +KP+   FV+VL+AC H  L +    +F+S++ V+G+   L+HYA + +LL
Sbjct: 431 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  +++A + I  +  +P   +WSTLLS C++  +++  E  A  +F ++  N G Y+
Sbjct: 491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYV 550

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           ++ NMYA+ GRW+++A +R  M+ K ++K  A SWIE+ NK H FVS DR+HP  + I E
Sbjct: 551 LMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINE 610

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            L  +++++++ G+  +T  VLHD  EE K + +  HSE+LA+A+ +I    G T IR+ 
Sbjct: 611 FLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTT-IRVT 669

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KNIR+C DCH+ +KF S I  R II+RD++RFHHF  GNCSC D W
Sbjct: 670 KNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 209/433 (48%), Gaps = 57/433 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-----MDLNFYEPNTTFLHNRLLHF 68
           + + G+      +  ++  CT + D+   + +        MD + Y  N       L++ 
Sbjct: 96  MRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNA------LMNM 149

Query: 69  YAK---SGKLFYARDLFDKMPLRDIISWNALLSAHA--RSGSVQDLRALFDKMPIRDSVS 123
           YAK    G      ++FD+MP R   S +  + A        +  +R +F+ MP +D VS
Sbjct: 150 YAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVS 209

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YNT IAG+A  G   +AL++   M     +P  +T  S L   ++ +D+ +GK+IHG ++
Sbjct: 210 YNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVI 269

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              +  +V++ ++L DMYAK   I+ +  +F R+  R+ +SWN +++GY++NG+  + + 
Sbjct: 270 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALR 329

Query: 244 LFQEMQLLGLNPDEVTVSNILGACF----------------------------------- 268
           LF++M    + P  V  S+++ AC                                    
Sbjct: 330 LFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYS 389

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G I  A ++F  +   D V WT +I+G+  +G   +A+ LF EM  + V+P++ +  +
Sbjct: 390 KCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVA 449

Query: 329 VVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM--- 384
           V+++C+ +  +       +    V G++ +L   +A+ D+  + G  ++A+   + M   
Sbjct: 450 VLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVE 509

Query: 385 PTRNVVSWNSMIN 397
           PT +V  W+++++
Sbjct: 510 PTGSV--WSTLLS 520



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 15/292 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   ++L+  +A+S  ++D   +F ++  RD +S+N+ +AG+   G   EAL++F +M 
Sbjct: 276 DVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMV 335

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             + +P      S + ACA L  L  GKQ+HG ++ G  G N+F+ +AL DMY+K G I 
Sbjct: 336 TAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIK 395

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRMN  + VSW  +I G+  +G   + + LF+EM+  G+ P++V    +L AC 
Sbjct: 396 AARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS 455

Query: 269 QTGRIDDAGRLFHVI-------KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
             G +D+A   F+ +       +E ++      ++G  + GK E+A    ++M    V P
Sbjct: 456 HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG--RAGKLEEAYNFISKMC---VEP 510

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCG 372
                S+++SSC+   +L   + V  K  +  VD + + +  L+ +MY   G
Sbjct: 511 TGSVWSTLLSSCSVHKNLELAEKVAEK--IFTVDSENMGAYVLMCNMYASNG 560



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 38/189 (20%)

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +K    + W ++I  +T       AL  F EM +    PD     SV+ SC  +  L
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC---------------------------- 371
             G+ VHG  V LG+D DL   +AL++MY K                             
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 372 ---------GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
                    G+ D    VF +MP ++VVS+N++I GYAQ+G   +AL +  ++   +LKP
Sbjct: 182 KAETCIMPFGI-DSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKP 240

Query: 423 DSFTFVSVL 431
           DSFT  SVL
Sbjct: 241 DSFTLSSVL 249


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/641 (35%), Positives = 358/641 (55%), Gaps = 44/641 (6%)

Query: 65  LLHFYAKSGKLFYARDL----FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +L   +K   LF   +L    F    L D      L+  +A  G +   R +FD+M  RD
Sbjct: 120 ILKAVSKVSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRD 179

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++NT I  +   G   EA ++F  M+     P +    + ++AC +  ++R  + I+ 
Sbjct: 180 VVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYD 239

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            ++  ++  +  +  AL  MYA  G +D A   F +M+ RNL     M+SGY K      
Sbjct: 240 FLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSK------ 293

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                         GR+DDA  +F   + KD VCWTTMI  Y +
Sbjct: 294 -----------------------------AGRLDDARVIFDQTEMKDLVCWTTMISAYAE 324

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +   ++AL +F EM    ++PD  ++ SV+S+C  L +L   + VH    + G++  L +
Sbjct: 325 SDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPI 384

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +ALI+MY KCG  D A  VF  MPTRNVVSW+SMIN +A +G+  ++L+L+ ++ QEN+
Sbjct: 385 DNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENV 444

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  TFV VL  C H+ L E G+  F S++  + ITP ++HY CM++L GR++ + +A+
Sbjct: 445 EPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREAL 504

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           ++I+S+P  PN +IW +L+S C + G+++ GE+AA+ + +LEP + G  +++SN+YA   
Sbjct: 505 EVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLMSNIYAREY 564

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+ V  IR  M+ K V K    S I+++ K H+F+  D+ H ++  IY +L +++ KL+
Sbjct: 565 RWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKLYEVVSKLK 624

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH-----GVTPIRIMKNIRV 655
            AG+ P+   VL D +EEEK   + +HSEKLAL + L+ K           IRI+KN+RV
Sbjct: 625 LAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCGVIRIVKNLRV 684

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH F K  S +    II+RD  RFH +  G CSC+D W
Sbjct: 685 CEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/412 (25%), Positives = 196/412 (47%), Gaps = 61/412 (14%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-- 117
           F+   L+  YA  G++ YAR++FD+M  RD+++WN ++  + R G + +   LF++M   
Sbjct: 150 FVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDS 209

Query: 118 --IRDSVSYNTAIAGFANKGFSREALQVFSRMQKD--RFEPTDYTHVSALNACAQLLDLR 173
             + D +     ++     G  R    ++  + ++  R +    T +  + A A  +D+ 
Sbjct: 210 NVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDM- 268

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
              +   K+ V NL    FV  A+   Y+K G +D AR +FD+   ++LV W  MIS Y 
Sbjct: 269 -AMEFFRKMSVRNL----FVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYA 323

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------------------- 274
           ++  P++ + +F+EM   G+ PD VT+ +++ AC   G +D                   
Sbjct: 324 ESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLP 383

Query: 275 ---------------DAGR-LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                          DA R +F  +  ++ V W++MI  +  +G+  D+L LF +M  E+
Sbjct: 384 IDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQEN 443

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCG 372
           V P++ +   V+  C+     + G V  GK +   + D+  ++        ++D++ +  
Sbjct: 444 VEPNEVTFVGVLYGCS-----HSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRAN 498

Query: 373 VTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           +  +A  V   MP   NVV W S+++    +G+ LE   L  K + + L+PD
Sbjct: 499 LLREALEVIESMPMAPNVVIWGSLMSACRVHGE-LELGELAAKRILK-LEPD 548



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 159/304 (52%), Gaps = 8/304 (2%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L   L+  YA +G +  A + F KM +R++    A++S ++++G + D R +FD+  +
Sbjct: 250 THLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEM 309

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D V + T I+ +A     +EAL+VF  M     +P   T +S ++AC  L  L + K +
Sbjct: 310 KDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWV 369

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H    +  L   + + NAL +MYAK G +D AR +F++M  RN+VSW+ MI+ +  +G+ 
Sbjct: 370 HRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEA 429

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTT 293
              + LF +M+   + P+EVT   +L  C  +G +++  ++F  + ++ N+      +  
Sbjct: 430 SDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGC 489

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+  + +     +AL +   M    + P+     S++S+C     L  G++   + + L 
Sbjct: 490 MVDLFGRANLLREALEVIESM---PMAPNVVIWGSLMSACRVHGELELGELAAKRILKLE 546

Query: 354 VDDD 357
            D D
Sbjct: 547 PDHD 550



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 82/148 (55%)

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           +++ + +++   +++G+    ++ +  +     R D+ S   ++ + +K+++L+ G  +H
Sbjct: 78  ESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELH 137

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
           G A  +    D  V + L+DMY  CG  + A  VF+ M  R+VV+WN+MI  Y + G   
Sbjct: 138 GFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLD 197

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSAC 434
           EA  L++++   N+ PD     +++SAC
Sbjct: 198 EAFKLFEEMKDSNVMPDEMILCNIVSAC 225


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 331/569 (58%), Gaps = 37/569 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  C     L +G+ +H  I+      ++ + N L +MYAK G +++AR +F++M  R+ 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GA 266
           V+W  +ISGY ++ +P   +  F +M   G +P+E T+S+++                G 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 267 CFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           C + G                    +DDA  +F  ++ +++V W  +I G+ +    E A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF  ML +  RP  FS +S+  +C+    L  G+ VH   +  G        + L+DM
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y K G   DA  +F+ +  R+VVSWNS++  YAQ+G   EA+  ++++ +  ++P+  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           +SVL+AC H+ L + G ++++ +    GI P   HY  +++LLGR+ D+++A+  I+ +P
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P + IW  LL+ C M  + + G  AA H+FEL+P + GP+++L N+YA+ GRW D A 
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +R  MK   VKK  A SW+EI+N +H FV+ D  HP+ E I  +  +++ K++E G+ P+
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 545

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           T  V+    ++E+  ++ YHSEK+ALA+ L+  P G T I I KNIRVCGDCH  +K AS
Sbjct: 546 TSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGST-IHIKKNIRVCGDCHTAIKLAS 604

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            ++GR II+RD+NRFHHF  GNCSCKD W
Sbjct: 605 KVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 36/346 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+  N LL+ +A+ GS+++ R +F+KMP RD V++ T I+G++      +AL  F++M 
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  + P ++T  S + A A       G Q+HG  V      NV V +AL D+Y + G +D
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD + +RN VSWN +I+G+ +    +K ++LFQ M   G  P   + +++ GAC 
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            T                                   G I DA ++F  + ++D V W +
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 333

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y Q+G  ++A+  F EM    +RP++ S  SV+++C+    L  G   +      G
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG 393

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           +  +      ++D+  + G  + A      MP     + W +++N 
Sbjct: 394 IVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 439



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 154/331 (46%), Gaps = 43/331 (12%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y + G +  A+ +FD +  R+ +SWNAL++ HAR    +                 
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE----------------- 244

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         +AL++F  M +D F P+ +++ S   AC+    L +GK +H  ++ 
Sbjct: 245 --------------KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                  F  N L DMYAK G I  AR +FDR+  R++VSWN +++ Y ++G  K+ +  
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F+EM+ +G+ P+E++  ++L AC  +G +D+    + ++K KD +      + T++    
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLG 409

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDL 358
           + G    AL    EM    + P      +++++C    +   G   +    V  +D DD 
Sbjct: 410 RAGDLNRALRFIEEM---PIEPTAAIWKALLNACRMHKNTELG--AYAAEHVFELDPDDP 464

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
                L ++Y   G  +DA  V   M    V
Sbjct: 465 GPHVILYNIYASGGRWNDAARVRKKMKESGV 495



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 130/285 (45%), Gaps = 44/285 (15%)

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           N++    +  D+   ++++  C     L  G++VH   +      D+++ + L++MY KC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  ++A  VF  MP R+ V+W ++I+GY+Q+ +  +AL  ++++L+    P+ FT  SV+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 432 SA--------CLHA---------------------DLFER------GQNHFDSISAVHGI 456
            A        C H                      DL+ R       Q  FD++ + + +
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +     +  +I    R S  +KA++L + +     +P+   +++L   C+  G ++ G+ 
Sbjct: 229 S-----WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 514 AARHLFEL-EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
              ++ +  E + A     L +MYA  G   D   I   +  ++V
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 328



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  L   C+    +E  K + ++M +   E    F  N LL  YAKSG +  AR +FD+
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYM-IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 322

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTAIAGFANKGFSREA 140
           +  RD++SWN+LL+A+A+ G  ++    F++M    IR + +S+ + +   ++ G   E 
Sbjct: 323 LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
              +  M+KD   P  + +V+ ++   +  DL R 
Sbjct: 383 WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 368/679 (54%), Gaps = 86/679 (12%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           + +L+  C R      A+R+ + + +     +  F+ NRL+  Y K G    AR +FD+M
Sbjct: 22  FAKLLDSCVRSKSGIDARRIHARI-IKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRM 80

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P R+  S+NA+LS   + G + +   +F  MP  D  S+N  ++GFA      EAL+ F 
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M  + F   +Y+  SAL+ACA L DL  G QIH  I       +V++ +AL DMY+K G
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A+  FD M  RN+VSWN +I+ Y +NG   K +++F  M   G+ PDE+T+++++ 
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 266 AC------------------------------------FQTGRIDDAGRLF------HVI 283
           AC                                     +  R+++A  +F      +V+
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 284 KEKDNVC-------------------------WTTMIVGYTQNGKEEDALILFNEMLSED 318
            E   VC                         W  +I GYTQNG+ E+A+ LF  +  E 
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 319 VRPDKFSISSVVSSCAKLASL-----YHGQVV-HGKAVVLGVDDDLLVSSALIDMYCKCG 372
           + P  ++  +++++CA LA L      H Q++ HG     G + D+ V ++LIDMY KCG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           + +D   VF  M  R+VVSWN+MI GYAQNG    AL ++ K+L    KPD  T + VLS
Sbjct: 441 MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLS 500

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L E G+ +F S+    G+ P  DH+ CM++LLGR+  +D+A DLI+++P +P++
Sbjct: 501 ACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDN 560

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           ++W +LL+ C + G+I+ G+  A  L E++P+N+GPY++LSNMYA  GRW+DV  +R  M
Sbjct: 561 VVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQM 620

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP------ 606
           + + V K    SWIEI ++VH F+ +D+ HP  + I+  L  L ++++ AG+ P      
Sbjct: 621 RQRGVIKQPGCSWIEIQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGYVPEADDDE 680

Query: 607 ------NTKLVLHDTQEEE 619
                 +++LVLH   E E
Sbjct: 681 ICEEESDSELVLHFEMETE 699



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 63/144 (43%), Gaps = 31/144 (21%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D    + ++ SC +  S    + +H + +      ++ + + L+D Y KCG  +DA  VF
Sbjct: 18  DSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVF 77

Query: 382 NMMPTRNV-------------------------------VSWNSMINGYAQNGQDLEALA 410
           + MP RN                                 SWN+M++G+AQ+ +  EAL 
Sbjct: 78  DRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALR 137

Query: 411 LYDKLLQENLKPDSFTFVSVLSAC 434
            +  +  E+   + ++F S LSAC
Sbjct: 138 FFVDMHSEDFVLNEYSFGSALSAC 161


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/602 (37%), Positives = 343/602 (56%), Gaps = 53/602 (8%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSRE--ALQVFSRMQKDRF-EPTDYTHVSALNACAQ 168
           +F++MP R+  S+NT I GF+     +   A+ +F  M  D F EP  +T  S L ACA+
Sbjct: 81  IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAK 140

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF-------------- 214
              ++ GKQIHG  +    GG+ FV + L  MY   G +  AR LF              
Sbjct: 141 TGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 200

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            R  +  +V WN+MI GY++ G  K    LF +M                          
Sbjct: 201 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKM-------------------------- 234

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
                    +++  V W TMI GY+ NG  +DA+ +F EM   D+RP+  ++ SV+ + +
Sbjct: 235 ---------RQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAIS 285

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           +L SL  G+ +H  A   G+  D ++ SALIDMY KCG+ + A  VF  +P  NV++W++
Sbjct: 286 RLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSA 345

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MING+A +GQ  +A+  + K+ Q  ++P    ++++L+AC H  L E G+ +F  + +V 
Sbjct: 346 MINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVD 405

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G+ P ++HY CM++LLGRS  +D+A + I ++P KP+ +IW  LL  C M+G+++ G+  
Sbjct: 406 GLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRV 465

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  L ++ P ++G Y+ LSNMYA+ G W +V+ +R  MK K+++K    S I+ID  +H+
Sbjct: 466 ANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHE 525

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           FV ED +HP+ + I   L ++  KL+ AG+ P T  VL + +EE+K   + YHSEK+A A
Sbjct: 526 FVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATA 585

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G  PIRI+KN+R+C DCH  +K  S +  R I +RD  RFHHF  G+CSC D
Sbjct: 586 FGLISTSPG-KPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMD 644

Query: 695 NW 696
            W
Sbjct: 645 YW 646



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 187/459 (40%), Gaps = 117/459 (25%)

Query: 59  TFLHNRLLHFYAKSG----KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           T     +L F A S      L YA  +F++MP R+  SWN ++   + S          D
Sbjct: 55  TLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDE--------D 106

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLR 173
           K  I                     A+ +F  M  D F EP  +T  S L ACA+   ++
Sbjct: 107 KALI---------------------AITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQ 145

Query: 174 RGKQIHGKIVVGNLGGNVFVR--------------------------------------- 194
            GKQIHG  +    GG+ FV                                        
Sbjct: 146 EGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRD 205

Query: 195 ------NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
                 N + D Y + G+   AR LFD+M  R++VSWN MISGY  NG  K  +++F+EM
Sbjct: 206 GEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM 265

Query: 249 QLLGLNPDEVTVSNILGACFQTG-----------------RIDD---------------- 275
           +   + P+ VT+ ++L A  + G                 RIDD                
Sbjct: 266 KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGII 325

Query: 276 --AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             A  +F  +  ++ + W+ MI G+  +G+  DA+  F +M    VRP   +  +++++C
Sbjct: 326 EKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTAC 385

Query: 334 AKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVS 391
           +    +  G+    + V V G++  +     ++D+  + G+ D+A      MP + + V 
Sbjct: 386 SHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVI 445

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           W +++      G ++E       +L + +  DS  +V++
Sbjct: 446 WKALLGACRMQG-NVEMGKRVANILMDMVPHDSGAYVAL 483


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 358/617 (58%), Gaps = 43/617 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L++ +A+SG++ D  ++F+ M  +DSVS+N+ I+G      S +A + F RM++    
Sbjct: 426  NGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSM 485

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P+++T +S L++CA L  +  G+QIH   +   L  +V V NAL  +YA+ G   +   +
Sbjct: 486  PSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKV 545

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPK--KCIDLFQEMQLLGLNPDEVTVSNILGA----- 266
            F  M   + VSWN +I G L + +    + +  F +M   G     VT  NIL A     
Sbjct: 546  FSLMPEYDQVSWNSVI-GALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLS 604

Query: 267  -----------------------------CF-QTGRIDDAGRLFHVIKE-KDNVCWTTMI 295
                                         C+ + G +++  ++F  + E +D V W +MI
Sbjct: 605  LHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMI 664

Query: 296  VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             GY  N     A+ L   M+ +  R D F+ ++++S+CA +A+L  G  VH   +   ++
Sbjct: 665  SGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLE 724

Query: 356  DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
             D++V SAL+DMY KCG  D A   F +MP RNV SWNSMI+GYA++G   +AL L+ ++
Sbjct: 725  SDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRM 784

Query: 416  LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            + +   PD  TFV VLSAC H    E G  HF S+S V+ ++P ++H++CM++LLGR+  
Sbjct: 785  MLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGK 844

Query: 476  VDKAVDLIKSLPHKPNSLIWSTLLSVC--AMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            +D+  D I S+P KPN LIW T+L  C  A   + + G  AA  L ELEP NA  Y++L+
Sbjct: 845  LDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLA 904

Query: 534  NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            NMYA+  +WEDVA  R++MK   VKK A  SW+ + + VH FV+ D+ HPE ++IY++L 
Sbjct: 905  NMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLR 964

Query: 594  KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
            +L +K+++AG+ P TK  L D + E K + + YHSEK+A+A+ L ++     PIRIMKN+
Sbjct: 965  ELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQ--SALPIRIMKNL 1022

Query: 654  RVCGDCHLFMKFASDII 670
            RVCGDCH    + S II
Sbjct: 1023 RVCGDCHSAFGYISKII 1039



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 149/562 (26%), Positives = 259/562 (46%), Gaps = 93/562 (16%)

Query: 89  DIISWNALLSAHARS-GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D++  N L+S +     S  D R++FD + IR+S+S+N+ I+ ++ +G +  A  +FS M
Sbjct: 208 DVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSM 267

Query: 148 QKD----RFEPTDYTHVSALN-ACAQL-LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           QK+     F+P +YT  S +  AC+ +   L   +Q+  ++       +++V +AL   +
Sbjct: 268 QKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGF 327

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL---------- 251
           A+ G  D A+ +F++M  RN+VS N ++ G +K  Q +    +F EM+ L          
Sbjct: 328 ARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVV 387

Query: 252 ----------------------------GLNPDEVTVSNILGACF-QTGRIDDAGRLFHV 282
                                       GLN ++V + N L   + ++G I DA  +F +
Sbjct: 388 LLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFEL 447

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + EKD+V W ++I G  QN   EDA   F+ M      P  F++ S +SSCA L  +  G
Sbjct: 448 MVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLG 507

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H   + LG+D D+ VS+AL+ +Y + G   +   VF++MP  + VSWNS+I   + +
Sbjct: 508 EQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDS 567

Query: 403 GQDL-EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ----------------- 444
              + +A+  + ++++        TF+++LSA     L E                    
Sbjct: 568 EASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAI 627

Query: 445 --------------NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
                         N  + I A    T     +  MI+    +  + KA+DL+  +  K 
Sbjct: 628 GNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKG 687

Query: 491 ---NSLIWSTLLSVCAMKGDIKHG-EMAA---RHLFELEPINAGPYIMLSNMYAACGRWE 543
              +S  ++T+LS CA    ++ G E+ A   R   E + +       L +MY+ CGR +
Sbjct: 688 QRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSA---LVDMYSKCGRID 744

Query: 544 DVASIRSSMKSKNVKKFAAYSW 565
             +     M  +NV     YSW
Sbjct: 745 YASRFFELMPLRNV-----YSW 761



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 185/424 (43%), Gaps = 81/424 (19%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL N L++ Y + G L  A+ LFD+M  R++++W  L                       
Sbjct: 107 FLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACL----------------------- 143

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLDLRRGKQ 177
                   I+G+   G   EA   F  M +  F P  Y   SAL AC +      + G Q
Sbjct: 144 --------ISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQ 195

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           IHG I     G +V V N L  MY       + AR +FD +  RN +SWN +IS Y + G
Sbjct: 196 IHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRG 255

Query: 237 QPKKCIDLFQEMQLLGLN----PDEVTVSNIL---------GACF--------------- 268
                 DLF  MQ  GL     P+E T  +++         G C                
Sbjct: 256 DAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQ 315

Query: 269 -------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G  DDA  +F  +  ++ V    ++VG  +  + E A  +F+EM 
Sbjct: 316 DLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM- 374

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYH----GQVVHGKAVVLGVDDD-LLVSSALIDMYCK 370
            + V  +  S   ++S+ ++ + L      G+ VH   +  G++D+ + + + L++MY K
Sbjct: 375 KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 434

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            G   DA +VF +M  ++ VSWNS+I+G  QN    +A   + ++ +    P +FT +S 
Sbjct: 435 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLIST 494

Query: 431 LSAC 434
           LS+C
Sbjct: 495 LSSC 498



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 181/377 (48%), Gaps = 56/377 (14%)

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            +++H + +     GN+F+ N L ++Y + G++  A+ LFD M+NRNLV+W  +ISGY +
Sbjct: 90  ARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQ 149

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG----------------------- 271
           NG+P +    F++M   G  P+     + L AC ++G                       
Sbjct: 150 NGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 209

Query: 272 ---------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                            +DA  +F  I  ++++ W ++I  Y++ G    A  LF+ M  
Sbjct: 210 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 269

Query: 317 EDV----RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----GVDDDLLVSSALIDMY 368
           E +    +P++++  S++++    +S+  G  V  + +      G   DL VSSAL+  +
Sbjct: 270 EGLGFSFKPNEYTFGSLITTAC--SSVDFGLCVLEQMLARVEKSGFLQDLYVSSALVSGF 327

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            + G+TDDA  +F  M  RNVVS N ++ G  +  Q   A  ++ + +++ +  +S ++V
Sbjct: 328 ARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHE-MKDLVGINSDSYV 386

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC-----MINLLGRSSDVDKAVDLI 483
            +LSA     + E G+     + A H I   L+         ++N+  +S  +  A  + 
Sbjct: 387 VLLSAFSEFSVLEEGRRKGREVHA-HVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVF 445

Query: 484 KSLPHKPNSLIWSTLLS 500
           + +  K +S+ W++L+S
Sbjct: 446 ELMVEK-DSVSWNSLIS 461



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 144/350 (41%), Gaps = 80/350 (22%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA-----------------RSG- 104
           N LL  YA++G       +F  MP  D +SWN+++ A +                 R G 
Sbjct: 527 NALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGW 586

Query: 105 -----------------SVQDLRALFDKMPIRDSVSYNTAIAG-----FANKGFSREALQ 142
                            S+ ++      + ++  +S +TAI       +   G   E  +
Sbjct: 587 GLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEK 646

Query: 143 VFSRMQKDRFEPT--------------------------------DYTHVSALNACAQLL 170
           +F+RM + R E +                                 +T  + L+ACA + 
Sbjct: 647 IFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVA 706

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L RG ++H   +   L  +V V +AL DMY+K G ID A   F+ M  RN+ SWN MIS
Sbjct: 707 TLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMIS 766

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY ++G  +K + LF  M L G  PD VT   +L AC   G +++    F  + E   + 
Sbjct: 767 GYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLS 826

Query: 291 -----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
                ++ M+    + GK ++     N M    ++P+     +V+ +C +
Sbjct: 827 PRVEHFSCMVDLLGRAGKLDEVGDFINSM---PMKPNVLIWRTVLGACCR 873



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 27/286 (9%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G +  A +LF  +  ++ V W  +I GYTQNGK ++A   F +M+     P+ ++  S
Sbjct: 118 RIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGS 177

Query: 329 VVSSCAK--LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC-GVTDDAWTVFNMMP 385
            + +C +   +    G  +HG         D++V + LI MY  C    +DA +VF+ + 
Sbjct: 178 ALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIG 237

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL----KPDSFTFVSVL-SACLHADLF 440
            RN +SWNS+I+ Y++ G  + A  L+  + +E L    KP+ +TF S++ +AC   D  
Sbjct: 238 IRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFG 297

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                   +     G    L   + +++   R    D A ++ + +  +          +
Sbjct: 298 LCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVR----------N 347

Query: 501 VCAMKGDI------KHGEMAARHLFELEP---INAGPYIMLSNMYA 537
           V +M G +      K GE AA+   E++    IN+  Y++L + ++
Sbjct: 348 VVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFS 393



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 13/170 (7%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +++  G   +L +S+ LI++Y + G    A  +F+ M  RN+V+W  +I+GY QNG+
Sbjct: 93  LHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGK 152

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL---- 460
             EA A +  +++    P+ + F S L AC      E G +       +HG+        
Sbjct: 153 PDEACARFRDMVRAGFIPNHYAFGSALRACQ-----ESGPSGCKLGVQIHGLISKTRYGS 207

Query: 461 DHYAC--MINLLGRSSD-VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           D   C  +I++ G   D  + A  +   +  + NS+ W++++SV + +GD
Sbjct: 208 DVVVCNVLISMYGSCLDSANDARSVFDGIGIR-NSISWNSIISVYSRRGD 256



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 102/215 (47%), Gaps = 10/215 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  +AL+  +++ G +      F+ MP+R+  S+N+ I+G+A  G   +AL++F+RM 
Sbjct: 726 DVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMM 785

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            D   P   T V  L+AC+ +  +  G +       V  L   V   + + D+  + G++
Sbjct: 786 LDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKL 845

Query: 208 DKARWLFDRMNNR-NLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           D+     + M  + N++ W  ++    + NG+  +      EM LL L P       +L 
Sbjct: 846 DEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEM-LLELEPQNAVNYVLLA 904

Query: 266 ACFQTG-RIDDAGRLFHVIKE----KDNVC-WTTM 294
             + +G + +D  +    +KE    K+  C W TM
Sbjct: 905 NMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTM 939


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 340/609 (55%), Gaps = 75/609 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TFL N L+  YA+ G+L  AR +FD++PLR+  S+NALLSA+AR G   + RALF+ +P 
Sbjct: 52  TFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD 111

Query: 119 RDSVSYNTAIAGFA--NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
            D  SYN  +A  A   +G + +AL+  + M  D F    Y+  SAL+ACA   D R G+
Sbjct: 112 PDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALSACAAEKDSRTGE 171

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+HG +       +V +R+AL DMYAK    + AR +FD M  RN+VSWN +I+ Y +NG
Sbjct: 172 QVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSWNSLITCYEQNG 231

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
              + + LF EM   G +PDEVT+S+++ AC                             
Sbjct: 232 PVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLN 291

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY---------------------- 298
                   + GR  +A  +F  +  +  V  T+++ GY                      
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 299 ---------TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH--- 346
                     QNG+EE+A+ LF ++  + + P  ++  +V+++C  +A L  GQ  H   
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHV 411

Query: 347 ---GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
              G     G + D+ V ++L+DMY K G  DD   VF  M  R+ VSWN+MI GYAQNG
Sbjct: 412 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 471

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           +  +AL L++++L  N  PDS T + VLSAC H+ L + G+ +F S++  HGITPS DHY
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHY 531

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  + +A +LI  +P +P+S++W++LL  C +  +++ GE  A  LFEL+P
Sbjct: 532 TCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVELGEWTAGRLFELDP 591

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            N+GPY++LSNMYA  G+W +V  +R SMK + V K    SWIEI  K++ F++ D+ HP
Sbjct: 592 QNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEIGRKMNVFLARDKRHP 651

Query: 584 ETEIIYEEL 592
               I+  L
Sbjct: 652 CRNEIHNTL 660



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 136/282 (48%), Gaps = 40/282 (14%)

Query: 160 VSALNACAQLLDLRR-------GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           V+ L A + L DL R        +  H +I+   + G  F+ N L   YA+ G +  AR 
Sbjct: 14  VAHLRASSPLADLLRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARR 73

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  RN  S+N ++S Y + G+P +   LF+ +     +PD+ + + ++ A  + GR
Sbjct: 74  VFDEIPLRNTFSYNALLSAYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGR 129

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
                                        G   DAL     M ++D   + +S +S +S+
Sbjct: 130 -----------------------------GHAADALRFLAAMHADDFVLNAYSFASALSA 160

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA       G+ VHG        DD+ + SAL+DMY KC   +DA  VF+ MP RNVVSW
Sbjct: 161 CAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVVSW 220

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           NS+I  Y QNG   EAL L+ +++     PD  T  SV+SAC
Sbjct: 221 NSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSAC 262



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 113/272 (41%), Gaps = 54/272 (19%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L   +  H + +   V  +  + + L+  Y + G   DA  VF+ +P RN  S+N++++
Sbjct: 32  NLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLS 91

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            YA+ G+  EA AL++ +      PD  ++ +V++A     L   G+ H           
Sbjct: 92  AYARLGRPDEARALFEAIPD----PDQCSYNAVVAA-----LARHGRGH---------AA 133

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
            +L   A M            A D +       N+  +++ LS CA + D + GE     
Sbjct: 134 DALRFLAAM-----------HADDFVL------NAYSFASALSACAAEKDSRTGEQ-VHG 175

Query: 518 LFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           L    P     +I   L +MYA C R ED   +  +M  +NV      SW  +       
Sbjct: 176 LVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV-----VSWNSL------I 224

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
              ++  P  E +      L  ++  AGFSP+
Sbjct: 225 TCYEQNGPVGEALM-----LFVEMMAAGFSPD 251



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           T   Y  ++  C  + D++L ++   H+       +F   +  F+ N L+  Y K+G + 
Sbjct: 384 THYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFA 132
               +F++M  RD +SWNA++  +A++G  +D   LF++M       DSV+    ++   
Sbjct: 444 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACG 503

Query: 133 NKGFSREALQVFSRMQKD 150
           + G   E  + F  M +D
Sbjct: 504 HSGLVDEGRRYFHSMTED 521


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/650 (34%), Positives = 364/650 (56%), Gaps = 44/650 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+I  N L+  + +   V    ++FD+M  R+ VS+   + G+  +G ++ +L +   M 
Sbjct: 38  DLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMG 97

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P ++T  ++L AC  L  +  G QIHG  V         V NA  DMY+K G I 
Sbjct: 98  YSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG 157

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F++M  RNLVSWN MI+G+   G  +K + LFQ MQ  G  PDE T ++ L AC 
Sbjct: 158 MAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACG 217

Query: 269 QTGRID-------------------------------------DAGRLFHVIKEKDNVCW 291
             G I                                      +A ++F  I++K+ + W
Sbjct: 218 ALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISW 277

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + +I G+ Q G   +A+ LF ++       D F +S ++   A LA +  G+ +H   + 
Sbjct: 278 SALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILK 337

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           +    D+ V++++IDMY KCG+T++A  +F+ M  RNVVSW  MI GY ++G   +A+ L
Sbjct: 338 VPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHL 397

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++++  + ++ D   ++++LSAC H+ L    Q +F  +   H + P+++HYACM+++LG
Sbjct: 398 FNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILG 457

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  + +A +LI+++  KPN  IW TLLS C + G+++ G      LF ++  N   Y+M
Sbjct: 458 RAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVM 517

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           +SN+YA  G W++   +R  +K+K +KK A  SW+EI+ ++H F   D THP TE I+E 
Sbjct: 518 MSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEM 577

Query: 592 LSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI----KKPHGVTP 646
           L ++ +++ +E G++   +  LHD +EE K +++  HSEKLA+   L+    +K  GV  
Sbjct: 578 LKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGV-- 635

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IR+ KN+RVCGDCH F+K  S I+ +  ++RD+NRFH F  G CSC D W
Sbjct: 636 IRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 187/396 (47%), Gaps = 47/396 (11%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  C++     +G Q+H   V    G ++ + N L DMY K   +D A  +FDRM  RN+
Sbjct: 11  LRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNV 70

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  ++ GYL+ G  K  + L  EM   G+ P+E T S  L AC               
Sbjct: 71  VSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGM 130

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + GRI  A ++F+ +  ++ V W  MI G+T  G    +
Sbjct: 131 CVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKS 190

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL--LVSSALI 365
           L+LF  M  +   PD+F+ +S + +C  L ++  G  +H   +  G    +  +++SA++
Sbjct: 191 LVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIV 250

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           D+Y KCG   +A  VF+ +  +N++SW+++I G+AQ G  LEA+ L+ +L +     D F
Sbjct: 251 DLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGF 310

Query: 426 TFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
               ++       L E+G Q H   +    G+  S+ +   +I++  +    ++A  L  
Sbjct: 311 VLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVAN--SIIDMYLKCGLTEEAERLFS 368

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLF 519
            +  + N + W+ +++     G  KHG    A HLF
Sbjct: 369 EMQVR-NVVSWTVMIT-----GYGKHGLGEKAIHLF 398



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 172/368 (46%), Gaps = 52/368 (14%)

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
           KNG   + + +      +G   D +  ++++    +  R+D A  +F  + E++ V WT 
Sbjct: 16  KNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTA 75

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++ GY Q G  + +L L  EM    V+P++F+ S+ + +C  L  + +G  +HG  V  G
Sbjct: 76  LMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSG 135

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            +   +V +A IDMY KCG    A  VFN MP RN+VSWN+MI G+   G   ++L L+ 
Sbjct: 136 FEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQ 195

Query: 414 KLLQENLKPDSFTFVSVLSAC-----------LHADLFERG------------------- 443
           ++  +   PD FTF S L AC           +HA L  RG                   
Sbjct: 196 RMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAK 255

Query: 444 -------QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL--- 493
                  Q  FD I        +L  ++ +I    +  ++ +A+DL + L    +++   
Sbjct: 256 CGYLFEAQKVFDRIE-----QKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGF 310

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWEDVASIR 549
           + S ++ V A    ++ G+    H + L+ + +G  I ++N    MY  CG  E+   + 
Sbjct: 311 VLSIMMGVFADLALVEQGKQM--HCYILK-VPSGLDISVANSIIDMYLKCGLTEEAERLF 367

Query: 550 SSMKSKNV 557
           S M+ +NV
Sbjct: 368 SEMQVRNV 375



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 127/278 (45%), Gaps = 36/278 (12%)

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            ++  ++ ++ +C+K      G  VH  AV +G   DL++++ LIDMY KC   D A +V
Sbjct: 2   SERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSV 61

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M  RNVVSW +++ GY Q G    +LAL  ++    +KP+ FTF + L AC    + 
Sbjct: 62  FDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVV 121

Query: 441 ERG--------QNHFDSISAVHGIT----------------------PSLDHYACMINLL 470
           E G        ++ F+ +S V   T                       +L  +  MI   
Sbjct: 122 ENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGH 181

Query: 471 GRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHG-EMAARHLFELEPINA 526
               +  K++ L + +  +   P+   +++ L  C   G I+ G ++ A  +    PI+ 
Sbjct: 182 THEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISI 241

Query: 527 GPYI--MLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              I   + ++YA CG   +   +   ++ KN+  ++A
Sbjct: 242 RNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSA 279


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/710 (33%), Positives = 386/710 (54%), Gaps = 27/710 (3%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   + +RG A    A  + +  C R       + + +H     +      +   L   Y
Sbjct: 160 AFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAAKAGHVAAHPLVPGFLAGMY 219

Query: 70  AKSGKLFYARDLF---DKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSV 122
           A+S  +  AR +    D  P    ++WN +++  AR G V D   L ++M    P+  S 
Sbjct: 220 AESADVGAARRVLETEDAPP----VAWNVVVACCARLGLVDDALDLAERMARSGPVEASP 275

Query: 123 S---YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           S   +N  ++G A  G  REA  V   M +    P   +  S L + A L  L  G + H
Sbjct: 276 SLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAH 335

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              +   L  +V+   A  DMYAK G ++ A+ +FD +  RN+ +WN +++GY   GQ  
Sbjct: 336 CFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFD 395

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295
             +DL +EM+   L+PD  T + ++      GR   A  L   +K      + V WT++I
Sbjct: 396 HALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLI 455

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-GV 354
            G   NG  ED+   FNEM  + V+P   ++S ++ +CA LA L  G+ +H  A+     
Sbjct: 456 SGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELHCFALRRRAY 515

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFN-MMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           D D++V++ALIDMY K G    A  +F  +   +N+VSWN+M+ G A +GQ  EA+AL+D
Sbjct: 516 DRDMVVATALIDMYSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQGREAIALFD 575

Query: 414 KLLQEN------LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            +   +      LKPDS TF ++L+AC   +L   G ++FD++ + +G+TP++++YACM+
Sbjct: 576 DMCSASAGAGAGLKPDSITFTALLTACRSMELITEGWDYFDAMESRYGVTPTVENYACMV 635

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LL R   +D+A D I   P K  + +W  LL+ C + G++   E AAR LF+LEP N+ 
Sbjct: 636 DLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVHGNLALAEAAARKLFKLEPYNSA 695

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR-THPETE 586
            Y+ + ++Y     +++  S++ +MK++ +     +SWI+I+  +H F  E +  HP+T 
Sbjct: 696 NYLQMVSLYEREQMFDEAESLKYAMKARALNTRPGWSWIQIEQSIHVFQVEGKPPHPDTA 755

Query: 587 IIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
            IY++L +L+ ++++AG+  +T  + ++  EE+K K +  H+EKLA+ Y LI      TP
Sbjct: 756 EIYQQLVRLVLQIRKAGYVADTSCIAYNVPEEDKEKLLLSHTEKLAITYGLIHSDASGTP 815

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IR++KN R+C DCH   K  S + GR IILRD++RFHHF  G CSC D W
Sbjct: 816 IRVIKNTRMCSDCHEVAKHISALCGRQIILRDADRFHHFTDGKCSCNDRW 865



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 34/388 (8%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D++ +N  +A  A      +A+  F+ M+     P  Y    AL+AC +    R G+ +H
Sbjct: 137 DTMLWNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVH 196

Query: 180 GKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
                 G++  +  V   L  MYA+  ++  AR + +   +   V+WN++++   + G  
Sbjct: 197 AHAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLE-TEDAPPVAWNVVVACCARLGLV 255

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
              +DL + M   G  P E + S                             W  ++ G 
Sbjct: 256 DDALDLAERMARSG--PVEASPS--------------------------LATWNAVLSGC 287

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++G++ +A  +   ML   + PD  S+SS++ S A L  L HG   H   +   ++ D+
Sbjct: 288 ARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDV 347

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              +A +DMY KCG  + A  VF+ +  RN+ +WNS++ GY+  GQ   AL L +++ + 
Sbjct: 348 YTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRN 407

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L PD  T+  ++S         +       + A+ G+TP++  +  +I+    + D + 
Sbjct: 408 RLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAI-GLTPNVVSWTSLISGSCHNGDYED 466

Query: 479 AVDLIKSLPH---KPNSLIWSTLLSVCA 503
           +      +     +P+ +  S LL  CA
Sbjct: 467 SFYFFNEMQKDHVQPSVVTMSVLLRACA 494



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/263 (20%), Positives = 103/263 (39%), Gaps = 40/263 (15%)

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D + W   +    +  +  DA+  F EM +  V PD ++ +  + +C +  +   GQ VH
Sbjct: 137 DTMLWNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVH 196

Query: 347 GKAVVLG-VDDDLLVSSALIDMY------------------------------CKCGVTD 375
             A   G V    LV   L  MY                               + G+ D
Sbjct: 197 AHAAKAGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPPVAWNVVVACCARLGLVD 256

Query: 376 DAWTVFNMM-------PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           DA  +   M        + ++ +WN++++G A++G+D EA  +   +L+  + PDS +  
Sbjct: 257 DALDLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMS 316

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           S+L +     L   G          H + P +      +++  +   ++ A  +  +L  
Sbjct: 317 SLLKSVASLGLLAHGMEAH-CFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLEL 375

Query: 489 KPNSLIWSTLLSVCAMKGDIKHG 511
           + N   W++L++  +  G   H 
Sbjct: 376 R-NITTWNSLVAGYSNAGQFDHA 397


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/560 (38%), Positives = 335/560 (59%), Gaps = 40/560 (7%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L+ ++RM        ++T    L +CA L  +  G+ +HG+ +   L G+ +V  +L DM
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G I  AR LFD+M  R++ SWN +I+GY+K G+     DLF+ M+           
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERME----------- 200

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE--D 318
                                    ++ V WT MI GYTQNG  E AL LF+EML +  +
Sbjct: 201 ------------------------HRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 236

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           ++P+  +I SV+ +CA+ A+L  G+ +H  A  +G+  +  V +AL  MY KC    +A 
Sbjct: 237 MKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEAR 296

Query: 379 TVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
             F+M+    +N+++WN+MI  YA +G  +EA+++++ +L+  ++PD+ TF+ +LS C H
Sbjct: 297 CCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSH 356

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           + L + G NHF+ +  +H + P ++HYAC+++LLGR+  + +A +LI  +P +    +W 
Sbjct: 357 SGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWG 416

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            LL+ C    +++  E+AAR LF LEP N+G Y++LSN+YA  G WE+V  +R+ +K + 
Sbjct: 417 ALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQG 476

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           +KK    SWIEI+ K H F+  D++HP+ + IY+ L  L +K++ AG+ P+T  VLHD  
Sbjct: 477 MKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDIS 536

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           EEEK  ++  HSEKLA+A+ L+    GV  +R+ KN+R+CGDCH   KF S I  R II+
Sbjct: 537 EEEKEYNLTTHSEKLAIAFGLLNTRPGVV-LRVTKNLRICGDCHAATKFISKIYEREIIV 595

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD NRFH F  G+CSC D W
Sbjct: 596 RDLNRFHCFKDGSCSCGDYW 615



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/219 (37%), Positives = 122/219 (55%), Gaps = 4/219 (1%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++   L+  Y K G +  AR LFDKM +RD+ SWNAL++ + + G +     LF++M  R
Sbjct: 143 YVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHR 202

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNACAQLLDLRRGKQ 177
           + VS+   I+G+   GF+ +AL +F  M +D  E  P   T VS L ACAQ   L RG++
Sbjct: 203 NIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRR 262

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKN 235
           IH       L  N  V+ AL  MYAK   + +AR  FD +  N +NL++WN MI+ Y  +
Sbjct: 263 IHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASH 322

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           G   + + +F+ M   G+ PD VT   +L  C  +G ID
Sbjct: 323 GCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLID 361


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 346/617 (56%), Gaps = 73/617 (11%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N  F+ NRL+  Y+K G L   R +FDKMP R+I +WN++++   + G + +  +LF  M
Sbjct: 53  NEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSM 112

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P RD  ++N+ ++GFA      EAL  F+ M K+ F   +Y+  S L+AC+ L D+ +G 
Sbjct: 113 PERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGV 172

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+H  I       +V++ +AL DMY+K G ++ A+ +FD M +RN+VSWN +I+ + +NG
Sbjct: 173 QVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNG 232

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
              + +D+FQ M    + PDEVT+++++ AC                             
Sbjct: 233 PAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILS 292

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMI------------------------- 295
                   +  RI +A  +F  +  ++ +  T+MI                         
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVV 352

Query: 296 ------VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ------ 343
                  GYTQNG+ E+AL LF  +  E V P  +S ++++ +CA LA L+ G       
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHV 412

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
           + HG     G +DD+ V ++LIDMY KCG  ++ + VF  M  R+ VSWN+MI G+AQNG
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              EAL L+ ++L+   KPD  T + VLSAC HA   E G+++F S++   G+ P  DHY
Sbjct: 473 YGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  +++A  +I+ +P +P+S+IW +LL+ C +  +I  G+  A  L E+EP
Sbjct: 533 TCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEP 592

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            N+GPY++LSNMYA  G+WEDV ++R SM+ + V K    SWI+I    H F+ +D++HP
Sbjct: 593 SNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHP 652

Query: 584 ETEIIYEELSKLIKKLQ 600
             + I+  L  LI +++
Sbjct: 653 RKKQIHSLLDILIAEMR 669



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 183/383 (47%), Gaps = 41/383 (10%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           + +H  ++       +F++N L D Y+K G ++  R +FD+M  RN+ +WN +++G  K 
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTK- 98

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                              G +D+A  LF  + E+D   W +M+
Sbjct: 99  ----------------------------------LGFLDEADSLFRSMPERDQCTWNSMV 124

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G+ Q+ + E+AL  F  M  E    +++S +SV+S+C+ L  +  G  VH         
Sbjct: 125 SGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFL 184

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ + SAL+DMY KCG  +DA  VF+ M  RNVVSWNS+I  + QNG  +EAL ++  +
Sbjct: 185 SDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMM 244

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
           L+  ++PD  T  SV+SAC      + GQ     +     +   +      +++  + S 
Sbjct: 245 LESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSR 304

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSN 534
           + +A  +  S+P + N +  ++++S  AM    K    AAR +F ++   N   +  L  
Sbjct: 305 IKEARFIFDSMPIR-NVIAETSMISGYAMAASTK----AARLMFTKMAERNVVSWNALIA 359

Query: 535 MYAACGRWEDVASIRSSMKSKNV 557
            Y   G  E+  S+   +K ++V
Sbjct: 360 GYTQNGENEEALSLFCLLKRESV 382



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 188/380 (49%), Gaps = 17/380 (4%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E     ++  C  ++ +++ + +   +  N    N   L N  +  YAK  ++  AR +F
Sbjct: 253 EVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIF 312

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D MP+R++I+  +++S +A + S +  R +F KM  R+ VS+N  IAG+   G + EAL 
Sbjct: 313 DSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALS 372

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG------GNVFVRNA 196
           +F  ++++   PT Y+  + L ACA L +L  G Q H  ++            ++FV N+
Sbjct: 373 LFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNS 432

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY K G +++   +F +M  R+ VSWN MI G+ +NG   + ++LF+EM   G  PD
Sbjct: 433 LIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPD 492

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILF 311
            +T+  +L AC   G +++    F  +     V      +T M+    + G  E+A  + 
Sbjct: 493 HITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMI 552

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCK 370
            EM    ++PD     S++++C    ++  G+ V  K  +L V+        L+ +MY +
Sbjct: 553 EEM---PMQPDSVIWGSLLAACKVHRNITLGKYVAEK--LLEVEPSNSGPYVLLSNMYAE 607

Query: 371 CGVTDDAWTVFNMMPTRNVV 390
            G  +D   V   M    V 
Sbjct: 608 LGKWEDVMNVRKSMRKEGVT 627



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 132/306 (43%), Gaps = 73/306 (23%)

Query: 322 DKFSISSVVSSC--AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           D    + ++ SC  +KL+++Y  + VH   +  G  +++ + + LID Y KCG  +D   
Sbjct: 18  DSSPFAKLLDSCIKSKLSAIY-VRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQ 76

Query: 380 VFNMMPTRNV-------------------------------VSWNSMINGYAQNGQDLEA 408
           VF+ MP RN+                                +WNSM++G+AQ+ +  EA
Sbjct: 77  VFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEA 136

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNH-----FDSISAVHGITPSLDH 462
           L  +  + +E    + ++F SVLSAC   +   +G Q H        +S V+  +  +D 
Sbjct: 137 LCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDM 196

Query: 463 YA------------------------CMINLLGRSSDVDKAVDLIKSLPH---KPNSLIW 495
           Y+                         +I    ++    +A+D+ + +     +P+ +  
Sbjct: 197 YSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTL 256

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWEDVASIRSS 551
           ++++S CA    IK G+     + + + +     I+LSN    MYA C R ++   I  S
Sbjct: 257 ASVISACASLSAIKVGQEVHGRVVKNDKLRND--IILSNAFVDMYAKCSRIKEARFIFDS 314

Query: 552 MKSKNV 557
           M  +NV
Sbjct: 315 MPIRNV 320


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/658 (33%), Positives = 361/658 (54%), Gaps = 75/658 (11%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           + D   LF+ +    ++++ + I  + + G   ++L  F  M      P      S L +
Sbjct: 56  LHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKS 115

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-------------GGEI----- 207
           CA L+DL  G+ +HG I+   L  +++  NAL +MY+K              GE+     
Sbjct: 116 CALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMT 175

Query: 208 --------------DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
                         D  R +F+ M  ++LVSWN +I+G  +NG  ++ + + +EM    L
Sbjct: 176 ERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANL 235

Query: 254 NPDEVTVSNIL----------------GACFQTG-------------------RIDDAGR 278
            PD  T+S++L                G   + G                   R+ D+ R
Sbjct: 236 KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCR 295

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F ++ E+D + W ++I G  QNG  ++ L  F +ML   ++P  +S SS++ +CA L +
Sbjct: 296 VFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTT 355

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L+ G+ +HG     G D+++ ++S+L+DMY KCG    A  +F+ M  R++VSW +MI G
Sbjct: 356 LHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMG 415

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            A +GQ  +A+ L++++  E +K       +VL+AC H  L +    +F+S++   GI P
Sbjct: 416 CALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAP 468

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            ++HYA + +LLGR+  +++A D I  +   P   IW+TLLS C +  +I   E  A  +
Sbjct: 469 GVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRI 528

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            E++P N G YI+L+N+Y+A  RW++ A  R+SM+   ++K  A SWIE+ NKV+ F++ 
Sbjct: 529 LEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAG 588

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP  E I E +  L++ +++ G+ P+T  V HD +EE+K   +C HSE+LA+ + +I
Sbjct: 589 DESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGII 648

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P G+T IR+ KN+RVC DCH   KF S I+GR I++RD++RFHHF  G CSC D W
Sbjct: 649 NTPAGMT-IRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 202/459 (44%), Gaps = 105/459 (22%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSH-----MDLNFYEPNTTFLHNRLLHFYAKSGK-LFYAR 79
           +  ++  C  + D+ L + L  +     +D + Y  N        L F  +SG+    A 
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSV---QDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
           ++FD+M  R         +   R+ SV     +R +F+ MP +D VS+NT IAG A  G 
Sbjct: 169 EVFDEMTER---------TRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGL 219

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             E L++   M     +P  +T  S L   A+ +D+ RGK+IHG  +   L  +++V ++
Sbjct: 220 YEETLRMIREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASS 279

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMYAK   +  +  +F  +  R+ +SWN +I+G ++NG   + +  F++M +  + P 
Sbjct: 280 LIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPK 339

Query: 257 EVTVSNILGAC-----------------------------------FQTGRIDDAGRLFH 281
             + S+I+ AC                                    + G I  A ++F 
Sbjct: 340 SYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD 399

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            ++ +D V WT MI+G   +G+  DA+ LF +M +E ++       +V+++C+      H
Sbjct: 400 RMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACS------H 446

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN------VVSWNSM 395
           G                             G+ D+AW  FN M TR+      V  + ++
Sbjct: 447 G-----------------------------GLVDEAWKYFNSM-TRDFGIAPGVEHYAAV 476

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            +   + G+  EA   YD +   ++ P    + ++LSAC
Sbjct: 477 SDLLGRAGRLEEA---YDFICGMHIGPTGSIWATLLSAC 512


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/641 (34%), Positives = 357/641 (55%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   NAL++ + + G V+  R LFD+MP RD +S+N  I+G+   G   E L++F  M+
Sbjct: 230 DIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMR 289

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   T  S ++AC  L D R G+ IH  ++      ++ V N+LT MY   G   
Sbjct: 290 GLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWR 349

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  LF RM  +++VSW  MISGY  N  P K ID ++ M    + PDE+TV+ +L AC 
Sbjct: 350 EAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACA 409

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    ID A  +FH I  K+ + WT+
Sbjct: 410 TLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTS 469

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G   N +  +ALI   +M    ++P+  ++++ +++CA++ +L  G+ +H   +  G
Sbjct: 470 IIAGLRLNNRCFEALIFLRQM-KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           V  D  + +AL+DMY +CG  + AW+ FN    ++V SWN ++ GY++ GQ    + L+D
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFD 587

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++++  ++PD  TF+S+L  C  + +  +G  +F  +   +G+TP+L HYAC+++LLGR+
Sbjct: 588 RMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRA 646

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            ++ +A   I+ +P  P+  +W  LL+ C +   I  GE++A+H+FEL+  + G YI+L 
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLC 706

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA CG+W +VA +R  MK   +   A  SW+E+  KVH F+S+D+ HP+T+ I   L 
Sbjct: 707 NLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLE 766

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
              +K+ E G +  ++    D  E  + +  C HSE+ A+A+ LI    G+ PI + KN+
Sbjct: 767 GFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGM-PIWVTKNL 825

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C +CH  +KF S  + R I +RD+  FHHF  G CSC D
Sbjct: 826 SMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 195/366 (53%), Gaps = 37/366 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRF 152
           NA L+   R G++ D   +F KM  R+  S+N  + G+A +G+  EA+ ++ RM      
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGV 192

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P  YT    L  C  + DL RGK++H  +V      ++ V NAL  MY K G++  AR 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LFDRM  R+++SWN MISGY +NG   + ++LF  M+ L ++PD +T+++++ AC     
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGD 312

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            G   +A +LF  ++ KD V WTTMI G
Sbjct: 313 RRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISG 372

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y  N   + A+  +  M  + V+PD+ ++++V+S+CA L  L  G  +H  A+   +   
Sbjct: 373 YEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY 432

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           ++V++ LI+MY KC   D A  +F+ +P +NV+SW S+I G   N +  EAL ++ + ++
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMK 491

Query: 418 ENLKPD 423
             L+P+
Sbjct: 492 MTLQPN 497



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 187/413 (45%), Gaps = 50/413 (12%)

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G    G   EA+++ + MQ+ R    +   V+ +  C        G +++   +      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
            V + NA   M+ + G +  A ++F +M+ RNL SWN+++ GY K G   + + L+  M 
Sbjct: 128 GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRML 187

Query: 250 LLG-LNPDEVTVSNILGAC-----------------------------------FQTGRI 273
            +G + PD  T   +L  C                                    + G +
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             A  LF  +  +D + W  MI GY +NG   + L LF  M    V PD  +++SV+S+C
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISAC 307

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L     G+ +H   +  G   D+ V ++L  MY   G   +A  +F+ M  +++VSW 
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWT 367

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI+GY  N    +A+  Y  + Q+++KPD  T  +VLSAC  A L        D+   +
Sbjct: 368 TMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSAC--ATL-----GDLDTGVEL 420

Query: 454 H--GITPSLDHYAC----MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           H   I   L  Y      +IN+  +   +DKA+D+  ++P K N + W+++++
Sbjct: 421 HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIA 472



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 144/345 (41%), Gaps = 54/345 (15%)

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV----L 352
           G   NGK E+A+ L N M    V  D+    ++V  C    +   G  V+  A+     L
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL 127

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           GV+    + +A + M+ + G   DAW VF  M  RN+ SWN ++ GYA+ G   EA+ LY
Sbjct: 128 GVE----LGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLY 183

Query: 413 DKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLL 470
            ++L    +KPD +TF  VL  C       RG+  H   +   +G    +D    +I + 
Sbjct: 184 HRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVR--YGYELDIDVVNALITMY 241

Query: 471 GRSSDVDKAVDLIKSLPHK----------------------------------PNSLIWS 496
            +  DV  A  L   +P +                                  P+ +  +
Sbjct: 242 VKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLT 301

Query: 497 TLLSVCAMKGDIKHG-EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           +++S C + GD + G ++ A  +     ++      L+ MY   G W +   + S M+ K
Sbjct: 302 SVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK 361

Query: 556 NVKKF----AAYSWIEIDNK---VHKFVSEDRTHPETEIIYEELS 593
           ++  +    + Y +  + +K    ++ + +D   P+   +   LS
Sbjct: 362 DIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLS 406



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 2/145 (1%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A  L   + L D +  NALL  + R G +    + F+    +D  S+N  + G++
Sbjct: 517 GKEIHAHVLRTGVGLDDFLP-NALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYS 574

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            +G     +++F RM K R  P + T +S L  C++   +R+G     K+    +  N+ 
Sbjct: 575 ERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLK 634

Query: 193 VRNALTDMYAKGGEIDKARWLFDRM 217
               + D+  + GE+ +A     +M
Sbjct: 635 HYACVVDLLGRAGELQEAHKFIQKM 659


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 341/594 (57%), Gaps = 38/594 (6%)

Query: 139 EALQVFSRMQKDRFEPTDYT-HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           E+L+  S   +  + P D   + + L  C     L +G+ +HG ++      ++ + N L
Sbjct: 33  ESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTL 92

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MYAK G +++AR +FD+M  R+ V+W  +ISGY ++ +P   + LF +M   G +P+E
Sbjct: 93  LNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNE 152

Query: 258 VTVSNIL----------------GACFQTG-------------------RIDDAGRLFHV 282
            T+S+++                G C + G                    +DDA  +F  
Sbjct: 153 FTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDA 212

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           ++ +++V W  +I G+ +    E AL LF  ML E  RP  FS +S+  +C+    L  G
Sbjct: 213 LESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQG 272

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + VH   +  G        + L+DMY K G   DA  +F+ +  R+VVSWNS++  YAQ+
Sbjct: 273 KWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQH 332

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA+  ++++ +  ++P+  +F+SVL+AC H+ L + G ++++ +    GI     H
Sbjct: 333 GFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKK-DGIVLEAWH 391

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y  +++LLGR+ D+++A+  I+ +P +P + IW  LL+ C M  + + G  AA H+FEL+
Sbjct: 392 YVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELD 451

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P + GP+++L N+YA+ GRW D A +R  MK   VKK  A SW+EI+N +H FV+ D  H
Sbjct: 452 PDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERH 511

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+ E I  +  +++ K++E G+ P+T  V+    ++E+  ++ YHSEK+ALA+ L+  P 
Sbjct: 512 PQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPP 571

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T I I KNIRVCGDCH  +K AS  +GR II+RD+NRFHHF  G CSCKD W
Sbjct: 572 GST-IHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 168/346 (48%), Gaps = 36/346 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  N LL+ +A+ GS+++ R +FDKMP RD V++ T I+G++      +AL +F++M 
Sbjct: 85  DLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQML 144

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  F P ++T  S + A A       G Q+HG  V      NV V +AL D+Y + G +D
Sbjct: 145 RFGFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 204

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD + +RN VSWN +I+G+ +    +K ++LFQ M   G  P   + +++ GAC 
Sbjct: 205 DAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACS 264

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            T                                   G I DA ++F  + ++D V W +
Sbjct: 265 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 324

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y Q+G   +A+  F EM    +RP++ S  SV+++C+    L  G   +      G
Sbjct: 325 LLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG 384

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           +  +      ++D+  + G  + A      MP     + W +++N 
Sbjct: 385 IVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 430



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 152/331 (45%), Gaps = 43/331 (12%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y + G +  A+ +FD +  R+ +SWNAL++ HAR    +                 
Sbjct: 193 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTE----------------- 235

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         +AL++F  M ++ F P+ +++ S   AC+    L +GK +H  ++ 
Sbjct: 236 --------------KALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 281

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                  F  N L DMYAK G I  AR +FDR+  R++VSWN +++ Y ++G   + +  
Sbjct: 282 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCW 341

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F+EM+  G+ P+E++  ++L AC  +G +D+    + ++K KD +      + T++    
Sbjct: 342 FEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVLEAWHYVTIVDLLG 400

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDL 358
           + G    AL    EM    + P      +++++C    +   G   +    V  +D DD 
Sbjct: 401 RAGDLNRALRFIEEM---PIEPTAAIWKALLNACRMHKNTELG--AYAAEHVFELDPDDP 455

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
                L ++Y   G  +DA  V   M    V
Sbjct: 456 GPHVILYNIYASGGRWNDAARVRKKMKESGV 486



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 138/298 (46%), Gaps = 44/298 (14%)

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +++  +E      N++    +  D+   ++++  C     L  G++VHG  +      DL
Sbjct: 27  SEDSDDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDL 86

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           ++++ L++MY KCG  ++A  VF+ MP R+ V+W ++I+GY+Q+ +  +AL L++++L+ 
Sbjct: 87  VMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRF 146

Query: 419 NLKPDSFTFVSVLSA--------CLHA---------------------DLFER------G 443
              P+ FT  SV+ A        C H                      DL+ R       
Sbjct: 147 GFSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDA 206

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLS 500
           Q  FD++ + + ++     +  +I    R    +KA++L + +     +P+   +++L  
Sbjct: 207 QLVFDALESRNDVS-----WNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFG 261

Query: 501 VCAMKGDIKHGEMAARHLFEL-EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            C+  G ++ G+    ++ +  E + A     L +MYA  G   D   I   +  ++V
Sbjct: 262 ACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 319



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 110/263 (41%), Gaps = 36/263 (13%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  L   C+    +E  K + ++M +   E    F  N LL  YAKSG +  AR +FD+
Sbjct: 255 SYASLFGACSSTGFLEQGKWVHAYM-IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 313

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  RD++SWN+LL+A                               +A  GF  EA+  F
Sbjct: 314 LAKRDVVSWNSLLTA-------------------------------YAQHGFGNEAVCWF 342

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M++    P + + +S L AC+    L  G   +  +    +    +    + D+  + 
Sbjct: 343 EEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRA 402

Query: 205 GEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G++++A    + M      + W  +++    +   +  +  +    +  L+PD+     I
Sbjct: 403 GDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTE--LGAYAAEHVFELDPDDPGPHVI 460

Query: 264 LGACFQT-GRIDDAGRLFHVIKE 285
           L   + + GR +DA R+   +KE
Sbjct: 461 LYNIYASGGRWNDAARVRKKMKE 483


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/737 (31%), Positives = 390/737 (52%), Gaps = 78/737 (10%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMD-LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           ++T ++  C  + D  LA +L + +  L F     T + N ++  Y K G +  A  +F 
Sbjct: 148 SFTSVMKACGSLGDSRLAIQLHALVSKLGF--GMETCIQNSVVGMYVKCGDVDLAETVFF 205

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
            +    +  WN+++  +++         +F++MP RD VS+NT I+ F+  GF  + L +
Sbjct: 206 DIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAM 265

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M    F P   T+ S L+ACA   DL+ G  +H +I+      ++   N L DMYAK
Sbjct: 266 FVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAK 325

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D A+ +F  +   + +SWN +I+G +  G  +  + LF +M+   +  DE  +  I
Sbjct: 326 CGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTI 385

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           LG C                                    + G  D A  +F ++  ++ 
Sbjct: 386 LGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNT 445

Query: 289 VCWTTMIVG-------------------------------YTQNGKEEDALILFNEMLSE 317
           + WT MI                                 Y QNG  E+ L L+  M S 
Sbjct: 446 ISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSN 505

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V+PD  + ++ + +CA LA +  G  V   A   G+  ++ V+++++ MY +CG+  +A
Sbjct: 506 GVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEA 565

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F+ +  ++++SWN+M+  +AQNG  ++ +  ++ +L+   KP+  ++VSVLS C H 
Sbjct: 566 KNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHM 625

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L   G+++FDS++ V GI+P+ +H++CM++LLGR+  +++A DLI+ +P KPN+ +WS 
Sbjct: 626 GLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSA 685

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           LL  C +  D++  E AA+ L EL+   +  Y++LSNMY+  G  ++VA +R  MK K +
Sbjct: 686 LLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGI 745

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
           +     SWIE+DN+VH F  ++ +HP+ + +Y +L +++K +++ G     +  +H +++
Sbjct: 746 RTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSVHRSKK 805

Query: 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
                   YHSEKLA A+ L+  P  + PI +MKN+RVC DCHL +K  S +  R +I+R
Sbjct: 806 --------YHSEKLAFAFGLLNLPSWM-PIHVMKNLRVCDDCHLVIKLLSLVTSRELIMR 856

Query: 678 DSNRFHHFVGGNCSCKD 694
           D  RFHHF  G CSCKD
Sbjct: 857 DGYRFHHFKDGICSCKD 873



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 163/602 (27%), Positives = 253/602 (42%), Gaps = 147/602 (24%)

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR--DSVSY 124
           H Y+  G    A  +F +   R+I +WN ++ A   S  + D   LFD+MP+R  DSVS+
Sbjct: 51  HMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSW 110

Query: 125 NTAIAGFANKGFSREALQVFSRMQKD------RFEPTDYTHVSALNACAQLLDLRRGKQI 178
            T I+G++  GF   + + FS M +D       ++P  +T  S + AC  L D R   Q+
Sbjct: 111 TTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFT--SVMKACGSLGDSRLAIQL 168

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +     G    ++N++  MY K G++D A  +F  +   +L  WN MI GY +   P
Sbjct: 169 HALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGP 228

Query: 239 KK-------------------------------CIDLFQEMQLLGLNPDEVTVSNILGAC 267
            K                               C+ +F EM   G +P+ +T  ++L AC
Sbjct: 229 YKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSAC 288

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
             T                                   G +D A R+F  ++E D++ W 
Sbjct: 289 ASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWN 348

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           ++I G    G  EDALILFN+M    V  D+F + +++  C+       G+++HG  +  
Sbjct: 349 SLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKS 408

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDA--------------WTV-----------------F 381
           G+     V +A+I MY KCG TD A              WT                  F
Sbjct: 409 GMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYF 468

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
           +MMP RN+V+WNSM++ Y QNG   E L LY  +    ++PD  TF + + AC       
Sbjct: 469 DMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVK 528

Query: 435 ------LHAD----------------------LFERGQNHFDSISAVHGITPSLDHYACM 466
                  HA                       L +  +N FDSI     I+ +    A  
Sbjct: 529 LGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFA 588

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM---AARHLFELEP 523
            N LG    +D   D++K+   KPN + + ++LS C+  G +  G+    +   +F + P
Sbjct: 589 QNGLGIKV-IDTFEDMLKT-ECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISP 646

Query: 524 IN 525
            N
Sbjct: 647 TN 648



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 161/396 (40%), Gaps = 85/396 (21%)

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           D F+   +TH S   A          +++H ++++  L  ++F+ N L  MY+  G    
Sbjct: 12  DAFKQCSFTHKSPHIA----------RKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHD 61

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           A  +F   ++RN+ +WN MI   + + +      LF EM                     
Sbjct: 62  AFQVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMP-------------------- 101

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED----VRPDKFS 325
                        ++ KD+V WTTMI GY+QNG    +   F+ M+ +        D FS
Sbjct: 102 -------------VRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            +SV+ +C  L        +H     LG   +  + ++++ MY KCG  D A TVF  + 
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
             ++  WNSMI GY+Q     +AL +++++ + +                     E   N
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERD---------------------EVSWN 247

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
              SI + HG    +   A  + +  +                 PN + + ++LS CA  
Sbjct: 248 TLISIFSQHGF--GVQCLAMFVEMCNQG--------------FSPNFMTYGSVLSACAST 291

Query: 506 GDIKHG-EMAARHLFELEPINAGPYIMLSNMYAACG 540
            D+K G  + AR L     ++      L +MYA CG
Sbjct: 292 SDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCG 327


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/655 (33%), Positives = 367/655 (56%), Gaps = 72/655 (10%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM--QKDRFEPTDYTHVSALNACAQL 169
           +FD++P  +  ++NT I  FA+     + L VF +M  +  RF P  YT    + A  ++
Sbjct: 86  VFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRF-PNSYTFPFVIKAATEV 144

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             L  G+ IHG ++  + G ++F+ N+L   Y+  G++D A  +F ++  +++VSWN MI
Sbjct: 145 SSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMI 204

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------- 267
           SG+++ G P++ + LF+ M++    P+ VT+  +L AC                      
Sbjct: 205 SGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGID 264

Query: 268 -------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT--------------- 299
                         + G ++DA RLF  ++EKD V WTTMI GY                
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVM 324

Query: 300 ----------------QNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHG 342
                           QNGK ++AL +F E+ L+++ +P++ +++S +++CA+L ++  G
Sbjct: 325 PREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG 384

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             +H      G+  +  ++++LIDMY KCG  + A  VF  +  R+V  W++MI G A +
Sbjct: 385 GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMH 444

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G    A+ L+ K+ +  +KP++ TF ++L AC H+ L + G+  F+ +  V+G+ P   H
Sbjct: 445 GHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKH 504

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           YACM+++LGR+  +++AV+LI+ +P  P++ +W  LL  C + G+++  EMA   L E +
Sbjct: 505 YACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETD 564

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
             N G Y++LSN+YA  G+W+ V+ +R  MK   ++K    S IE++  +H+F+  D +H
Sbjct: 565 SNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSH 624

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE-KVKSICYHSEKLALAYCLIKKP 641
           P +  IY +L +++ +++  G+  +   +L   +EE  K  ++  HSEKLA+AY LI+  
Sbjct: 625 PLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRME 684

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               PIRI+KN+RVCGDCH   K  S +  R I+LRD  RFHHF GGNCSC D W
Sbjct: 685 PS-QPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/249 (34%), Positives = 136/249 (54%), Gaps = 3/249 (1%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +  D+E  +    +++ N  + N   L N +L  Y K G L  AR LFDKM  +DI+S
Sbjct: 242 CAKRIDLEFGRWACDYIERNGIDINL-ILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVS 300

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR- 151
           W  ++  +A+ G     R +FD MP  D  ++N  I+ +   G  +EAL +F  +Q ++ 
Sbjct: 301 WTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKN 360

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +P + T  S L ACAQL  +  G  IH  I    +  N  +  +L DMY+K G ++KA 
Sbjct: 361 TKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKAL 420

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F  +  R++  W+ MI+G   +G  +  IDLF +MQ   + P+ VT +N+L AC  +G
Sbjct: 421 EVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSG 480

Query: 272 RIDDAGRLF 280
            +D+ GRLF
Sbjct: 481 LVDE-GRLF 488



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 172/379 (45%), Gaps = 69/379 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  ++  G +     +F K+  +D VS+N+ I+GF   G   EALQ+F RM+
Sbjct: 165 DLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMK 224

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P   T V  L+ACA+ +DL  G+     I    +  N+ + NA+ DMY K G ++
Sbjct: 225 MENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLE 284

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLK-------------------------------NGQ 237
            AR LFD+M  +++VSW  MI GY K                               NG+
Sbjct: 285 DARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNALISSYQQNGK 344

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQTGRIDDAG------------------- 277
           PK+ + +F+E+QL     P+EVT+++ L AC Q G +D  G                   
Sbjct: 345 PKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITT 404

Query: 278 ----------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                            +F+ ++ +D   W+ MI G   +G    A+ LF++M    V+P
Sbjct: 405 SLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKP 464

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKA-VVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           +  + ++++ +C+    +  G++   +   V GV       + ++D+  + G  ++A  +
Sbjct: 465 NAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVEL 524

Query: 381 FNMMPTRNVVS-WNSMING 398
              MP     S W +++  
Sbjct: 525 IEKMPIVPSASVWGALLGA 543



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 9/283 (3%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACF--QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
           L   M   GL  D  + + +  AC       +D A ++F  I   +   W T+I  +  +
Sbjct: 49  LHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASS 108

Query: 302 GKEEDALILFNEMLSEDVR-PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            K    L++F +ML E  R P+ ++   V+ +  +++SL  GQ +HG  +      DL +
Sbjct: 109 PKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFI 168

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           S++LI  Y   G  D A+ VF+ +  +++VSWNSMI+G+ Q G   EAL L+ ++  EN 
Sbjct: 169 SNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENA 228

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  T V VLSAC      E G+   D I   +GI  +L     M+++  +   ++ A 
Sbjct: 229 RPNRVTMVGVLSACAKRIDLEFGRWACDYIER-NGIDINLILSNAMLDMYVKCGSLEDAR 287

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            L   +  K + + W+T++   A  GD      AAR +F++ P
Sbjct: 288 RLFDKMEEK-DIVSWTTMIDGYAKVGDYD----AARRVFDVMP 325


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 328/572 (57%), Gaps = 37/572 (6%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           VS L ACA   D+  G+ +HG  V   +       N L DMYAK G +D A  +FD M+ 
Sbjct: 2   VSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSV 61

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------- 268
           R +V+W  +I+ Y + G   + I LF EM   G++PD  T++ +L AC            
Sbjct: 62  RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDV 121

Query: 269 ------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                   + G ++DA  +F  +  KD + W TMI GY++N   
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +AL LF +M+ E ++PD  +++ ++ +CA LASL  G+ VHG  +  G   D  V++AL
Sbjct: 182 NEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           +DMY KCGV   A  +F+M+PT+++++W  MI GY  +G    A+  ++++ Q  ++PD 
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            +F+S+L AC H+ L + G   F+ +     + P L+HYAC+++LL RS  +  A   IK
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIK 360

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
           S+P +P++ IW  LLS C +  D+K  E  A H+FELEP N G Y++L+N YA   +WE+
Sbjct: 361 SMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEE 420

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           V  +R  +  + +KK    SWIE+ +KVH F++ + +HP+ + I   L +L  K++E G+
Sbjct: 421 VKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGY 480

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P T+  L +    +K  ++C HSEKLA+A+ ++  P   T IR+ KN+RVCGDCH   K
Sbjct: 481 FPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPART-IRVSKNLRVCGDCHEMAK 539

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F S  +GR I+LRDSNRFHHF  G C C+  W
Sbjct: 540 FISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 44/345 (12%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  +A+ G +     +FD M +R  V++ + IA +A +G S EA+++F  M ++   
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T  + L+ACA    L  GK +H  I   ++  N+FV NAL DMYAK G ++ A  +
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M  ++++SWN MI GY KN  P + + LF +M +L + PD  T++ IL AC     +
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDM-VLEMKPDGTTLACILPACASLASL 215

Query: 274 DD-----------------------------------AGRLFHVIKEKDNVCWTTMIVGY 298
           D                                    A  LF +I  KD + WT MI GY
Sbjct: 216 DRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY 275

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG----QVVHGKAVVLGV 354
             +G   +A+  FNEM    + PD+ S  S++ +C+    L  G     V+  +     V
Sbjct: 276 GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDEC---NV 332

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
              L   + ++D+  + G    A+     MP   +   W ++++G
Sbjct: 333 KPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSG 377



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 146/272 (53%), Gaps = 6/272 (2%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T   +T L+    R    + A RL   MD     P+  F    +LH  A +G L   +D+
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDI-FTITTVLHACACNGSLENGKDV 121

Query: 82  FDKMPLRD----IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
            + +   D    I   NAL+  +A+ GS++D  ++F +MP++D +S+NT I G++     
Sbjct: 122 HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLP 181

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL +F  M  +  +P   T    L ACA L  L RGK++HG I+      +  V NAL
Sbjct: 182 NEALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANAL 240

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY K G    AR LFD +  ++L++W +MI+GY  +G     I  F EM+  G+ PDE
Sbjct: 241 VDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDE 300

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           V+  +IL AC  +G +D+  R F+V++++ NV
Sbjct: 301 VSFISILYACSHSGLLDEGWRFFNVMQDECNV 332


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/677 (34%), Positives = 363/677 (53%), Gaps = 76/677 (11%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           + +L+  C +   V  A+ + + + +     +  F+ NRL+  Y K G L  AR +FD M
Sbjct: 22  FAKLLDTCVKSKSVFEARLVHARI-IKTQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHM 80

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             R+  SWNA+L A  + G++ +   LF  MP RD  S+N  ++GFA +    EAL+   
Sbjct: 81  QQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVV 140

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M  + F   +Y+  SAL+ACA L+DL  G QIHG I       +V++ +AL DMY+K  
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCR 200

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A+  FD M+ RN+VSWN +I+ Y +NG   K +++F  M   G+ PDE+T++++  
Sbjct: 201 VVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVAS 260

Query: 266 ACFQTG------------------------------------RIDDAGRLFHVIKEKDNV 289
           AC                                        R+++A  +F  +  +D V
Sbjct: 261 ACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVV 320

Query: 290 CWTTM-------------------------------IVGYTQNGKEEDALILFNEMLSED 318
             T+M                               I GYTQNG+ E+A+ LF  +  E 
Sbjct: 321 SETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQ------VVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           + P  ++  +++++CA LA L  G+      + HG     G D D+ V ++LIDMY KCG
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCG 440

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           + +D   VF  M  R+ VSWN+MI GYAQNG   EAL ++ ++L    +PD  T + VLS
Sbjct: 441 LVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLS 500

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L E G+ +F S++  HG+ P  DHY CM++LLGR+  +D+A +LI+++P +P++
Sbjct: 501 ACSHAGLVEEGRCYFQSMTIEHGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDA 560

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           ++W +LL+ C + G+I  G+  A  L E++P+N+GPY++LSNMYA  GRW+DV  +R  M
Sbjct: 561 VVWGSLLAACKVHGNITLGKYVAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQM 620

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           +   V K    SWI I + +H F+ +D+ HP  + IY  L  L ++++  G+ P      
Sbjct: 621 RQMGVIKQPGCSWISIQSHLHVFMVKDKRHPHKKDIYLILKILTEQMKRVGYVPEAD--D 678

Query: 613 HDTQEEEKVKSICYHSE 629
            +  EEE    +  HSE
Sbjct: 679 DEPYEEESDSELILHSE 695



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 31/144 (21%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D    + ++ +C K  S++  ++VH + +      ++ + + L+D+Y KCG  +DA  VF
Sbjct: 18  DSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKVF 77

Query: 382 N-------------------------------MMPTRNVVSWNSMINGYAQNGQDLEALA 410
           +                                MP R+  SWN+M++G+AQ  +  EAL 
Sbjct: 78  DHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALR 137

Query: 411 LYDKLLQENLKPDSFTFVSVLSAC 434
               +  E+   + ++F S LSAC
Sbjct: 138 FVVDMHSEDFVLNEYSFGSALSAC 161



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 41/204 (20%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFY----EPNTTFLHNRLLHFYAKSGKLF 76
           T   +  L+  C  + D++L ++  +H +   F+    E +  F+ N L+  Y K G + 
Sbjct: 384 THYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVE 443

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
             R +F++M  RD +SWNA+                               I G+A  G+
Sbjct: 444 DGRLVFERMLERDNVSWNAM-------------------------------IVGYAQNGY 472

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN- 195
             EAL++F  M      P   T +  L+AC+    +  G+     + + +  G V V++ 
Sbjct: 473 GTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEH--GLVPVKDH 530

Query: 196 --ALTDMYAKGGEIDKARWLFDRM 217
              + D+  + G +D+A  L   M
Sbjct: 531 YTCMVDLLGRAGCLDEANNLIQTM 554


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 351/601 (58%), Gaps = 46/601 (7%)

Query: 141 LQVFSRMQKDRFEPTDYT----------HVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           + VF+  +++   P  Y+           +  L  CA+   +   K  HGK +   L G+
Sbjct: 38  ISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGD 97

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V + N L + Y+K G ++ AR +FD M  R+LVSWN MI  Y +N    + +D+F EM+ 
Sbjct: 98  VTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRN 157

Query: 251 LGLNPDEVTVSNILGAC-----------------------------------FQTGRIDD 275
            G    E T+S++L AC                                    + G I+D
Sbjct: 158 EGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMIND 217

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  +++K +V W++M+ GY Q+   E+AL+L+       +  ++F++SSV+ +C+ 
Sbjct: 218 AVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSN 277

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           LA+L  G+ +H      G   ++ V+S+ +DMY KCG   +++ +F+ +  +N+  WN++
Sbjct: 278 LAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTI 337

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I+G+A++ +  E + L++K+ Q+ + P+  TF S+LS C H  L E G+  F  +   +G
Sbjct: 338 ISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYG 397

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           ++P++ HY+CM+++LGR+  + +A +LIKS+P +P + IW +LL+ C +  +++  E+AA
Sbjct: 398 LSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAA 457

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           + LFELEP NAG +++LSN+YAA  +WE++A  R  ++  +VKK    SWI+I +KVH F
Sbjct: 458 KKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIF 517

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
              + +HP    I   L  L+ +L++ G+ P+ +  LHD +  +K + +  HSEKLAL +
Sbjct: 518 RVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVF 577

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            L+  P G T +RIMKN+R+C DCH FMK AS    R II+RD+NRFHHF  G+CSC + 
Sbjct: 578 GLMCLPEGST-VRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEF 636

Query: 696 W 696
           W
Sbjct: 637 W 637



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 187/373 (50%), Gaps = 41/373 (10%)

Query: 65  LLHFYAKSGKLFYARDLFDK---MPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +L   A++G +  A+    K   M L+ D+   N L++A+++ G V+  R +FD M  R 
Sbjct: 69  ILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERS 128

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            VS+NT I  +       EAL +F  M+ + F+ +++T  S L+AC    D    K++H 
Sbjct: 129 LVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHC 188

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +  +L  N++V  AL D+YAK G I+ A  +F+ M +++ V+W+ M++GY+++   ++
Sbjct: 189 LSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEE 248

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------------- 267
            + L++  Q + L  ++ T+S+++ AC                                 
Sbjct: 249 ALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVD 308

Query: 268 --FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              + G + ++  +F  ++EK+   W T+I G+ ++ + ++ +ILF +M  + + P++ +
Sbjct: 309 MYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVT 368

Query: 326 ISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
            SS++S C     +  G +         G+  +++  S ++D+  + G+  +A+ +   +
Sbjct: 369 FSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSI 428

Query: 385 PTRNVVS-WNSMI 396
           P     S W S++
Sbjct: 429 PFEPTASIWGSLL 441


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 245/715 (34%), Positives = 380/715 (53%), Gaps = 79/715 (11%)

Query: 21  ATEEAYT-QLVLDC--TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           A  ++YT  ++L C   RV++ E  ++L +H   + ++ +  ++ N L++ YA  G +  
Sbjct: 101 AKPDSYTYPILLQCCAARVSEFE-GRQLHAHAVSSGFDGDV-YVRNTLMNLYAVCGSVGS 158

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG-- 135
           AR +F++ P+ D++SWN LL+ + ++G V++   +F+ MP R++++ N+ IA F  KG  
Sbjct: 159 ARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCV 218

Query: 136 -------------------------------FSREALQVFSRMQKDRFEPTDYTHVSALN 164
                                             EAL +F  M+       +   VSAL+
Sbjct: 219 EKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALS 278

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLV 223
           AC+++L++  G+ +HG  V   +   V ++NAL  +Y+  GEI  AR +FD      +L+
Sbjct: 279 ACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLI 338

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SWN MISGYL+                                    G I DA  LF+ +
Sbjct: 339 SWNSMISGYLR-----------------------------------CGSIQDAEMLFYSM 363

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            EKD V W+ MI GY Q+    +AL LF EM    VRPD+ ++ S +S+C  LA+L  G+
Sbjct: 364 PEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGK 423

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H       +  ++++S+ LIDMY KCG  ++A  VF  M  + V +WN++I G A NG
Sbjct: 424 WIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNG 483

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              ++L ++  + +    P+  TF+ VL AC H  L   G+++F+S+   H I  ++ HY
Sbjct: 484 SVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  + +A +LI S+P  P+   W  LL  C    D + GE   R L +L+P
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQP 603

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            + G +++LSN+YA+ G W +V  IR  M    V K    S IE +  VH+F++ D+THP
Sbjct: 604 DHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHP 663

Query: 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL--IKKP 641
           +   I   L  +  KL+  G+ P T  V  D  EEEK  ++  HSEKLA+A+ L  I  P
Sbjct: 664 QINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPP 723

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              TPIR+ KN+R+C DCH  +K  S    R I++RD +RFHHF  G CSC D W
Sbjct: 724 ---TPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 132/486 (27%), Positives = 236/486 (48%), Gaps = 77/486 (15%)

Query: 63  NRLLHFYAKSGKLF---YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           +RL++F + S  L    Y+  +F+ +   +  +WN ++ AH                P +
Sbjct: 39  SRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAHL----------YLQNSPHQ 88

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
             + Y   +A  A                    +P  YT+   L  CA  +    G+Q+H
Sbjct: 89  ALLHYKLFLASHA--------------------KPDSYTYPILLQCCAARVSEFEGRQLH 128

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              V     G+V+VRN L ++YA  G +  AR +F+     +LVSWN +++GY++ G+ +
Sbjct: 129 AHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVE 188

Query: 240 KCIDLFQEMQLLGLNPDEVTV-SNILGACF-QTGRIDDAGRLFHVI--KEKDNVCWTTMI 295
           +   +F+ M      P+  T+ SN + A F + G ++ A R+F+ +  +E+D V W+ M+
Sbjct: 189 EAERVFEGM------PERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
             Y QN   E+AL+LF EM    V  D+  + S +S+C+++ ++  G+ VHG AV +GV+
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 356 D--------------------------------DLLVSSALIDMYCKCGVTDDAWTVFNM 383
           D                                DL+  +++I  Y +CG   DA  +F  
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           MP ++VVSW++MI+GYAQ+    EALAL+ ++    ++PD    VS +SAC H    + G
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +     IS  + +  ++     +I++  +   V+ A+++  ++  K  S  W+ ++   A
Sbjct: 423 KWIHAYISR-NKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVS-TWNAVILGLA 480

Query: 504 MKGDIK 509
           M G ++
Sbjct: 481 MNGSVE 486



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 91/187 (48%), Gaps = 6/187 (3%)

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTM 294
           P+    L  +  L GL  D    S ++     +  +     + R+F+ ++  +   W T+
Sbjct: 16  PRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTI 75

Query: 295 IVG--YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +    Y QN   + AL+ +   L+   +PD ++   ++  CA   S + G+ +H  AV  
Sbjct: 76  MRAHLYLQNSPHQ-ALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSS 134

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G D D+ V + L+++Y  CG    A  VF   P  ++VSWN+++ GY Q G+  EA  ++
Sbjct: 135 GFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVF 194

Query: 413 DKLLQEN 419
           + + + N
Sbjct: 195 EGMPERN 201


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/666 (34%), Positives = 356/666 (53%), Gaps = 41/666 (6%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTA 127
           +  +G+L +   +   + L++I++ +AL+S + R GS++D  ALF  +    D V +N  
Sbjct: 143 FLAAGRLIHRCAVEAGLGLQEIVA-SALVSMYGRCGSLRDANALFGHLERHLDVVLWNAM 201

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG--KQIHGKIVVG 185
           I   +  G  REAL++F RM +    P   T VS   AC+    LR    K  H  +   
Sbjct: 202 ITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDET 261

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            LG +V V  AL + YA+ GEID AR  F  M  RN VSW  MI+ + + G     ++ F
Sbjct: 262 GLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLA-VETF 320

Query: 246 QEMQLLGLNPDEVTVSNILGAC--FQTGRI------------------------------ 273
             M L G+ P   T+   L  C   +  R+                              
Sbjct: 321 HAMLLEGVVPTRSTLFAALEGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQ 380

Query: 274 DDAGRLFHVIKEK--DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           +DA R+F   +E   D    T MI  Y Q         L+   +   + PD+    + + 
Sbjct: 381 EDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALD 440

Query: 332 SCAKLASLYHGQVVHG-KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +CA LA+L  G+ +H   A    +D D+ + +A++ MY +CG   DA   F+ MP R+ +
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEI 500

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SWN+M++  AQ+G+  +   L+  +LQE    +   F+++LSAC HA L + G  HF ++
Sbjct: 501 SWNAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAM 560

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           +  HG+ P+ +HY CM++LLGR   +  A  +++++P  P++  W  L+  C + GD + 
Sbjct: 561 TGDHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTER 620

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           G  AA  + EL   +   Y+ L N+Y+A GRW+D A++R  M    ++K    S IEI +
Sbjct: 621 GRFAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRS 680

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           KVH+FV  DR+HP++E IY EL +++  ++ AG+   T  VLHD +EE+K + + +HSEK
Sbjct: 681 KVHEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEK 740

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ ++  P G T +R++KN+RVC DCH   KF S + GR I++RD  RFHHF  G C
Sbjct: 741 LAIAFGMMSTPQGST-LRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGAC 799

Query: 691 SCKDNW 696
           SC D W
Sbjct: 800 SCGDYW 805



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 125/528 (23%), Positives = 219/528 (41%), Gaps = 85/528 (16%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A  +LV +C   N +   K L S +  +       +L + L++ Y + G L  A D+F K
Sbjct: 31  AAVRLVREC---NSIARGKLLHSKISSSPSLSRDGYLASSLVYMYLRCGSLESAIDVFHK 87

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  + I+ W  L+SA                               + ++G S  A+ +F
Sbjct: 88  IAHKSIVLWTVLISA-------------------------------YVSRGHSAAAIALF 116

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            R+ ++         VS L+AC+    L  G+ IH   V   LG    V +AL  MY + 
Sbjct: 117 HRILQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRC 176

Query: 205 GEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G +  A  LF  +    ++V WN MI+   +NG P++ +++F  M  LG+ PD VT  ++
Sbjct: 177 GSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSV 236

Query: 264 LGACFQT-------------------------------------GRIDDAGRLFHVIKEK 286
             AC  +                                     G ID A + F  + E+
Sbjct: 237 FKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPER 296

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           + V WT+MI  +TQ G    A+  F+ ML E V P + ++ + +  C  L      ++V 
Sbjct: 297 NAVSWTSMIAAFTQIGHLL-AVETFHAMLLEGVVPTRSTLFAALEGCEDLRV---ARLVE 352

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN-----SMINGYAQ 401
             A  +GV  D+ + + L+  Y +C   +DA  VF+    R    W+     +MI  YAQ
Sbjct: 353 AIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFS---AREEGEWDAALVTAMIAVYAQ 409

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
                    L+   ++  + PD   +++ L AC        G+     ++A   +   + 
Sbjct: 410 CRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAADRRLDRDVT 469

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
               ++++ G+   +  A D    +P + + + W+ +LS  A  G ++
Sbjct: 470 LGNAIVSMYGQCGSLRDARDAFDGMPAR-DEISWNAMLSASAQHGRVE 516



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 141/300 (47%), Gaps = 17/300 (5%)

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           D    S+++    + G ++ A  +FH I  K  V WT +I  Y   G    A+ LF+ +L
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E +  D     SV+S+C+    L  G+++H  AV  G+    +V+SAL+ MY +CG   
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 376 DAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           DA  +F  +    +VV WN+MI   +QNG   EAL ++ ++LQ  + PD  TFVSV  AC
Sbjct: 181 DANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKAC 240

Query: 435 LHADLFERGQ-NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
             +      Q   F +     G+   +     ++N   R  ++D A      +P + N++
Sbjct: 241 SSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPER-NAV 299

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGRWEDVASIR 549
            W+++++     G          HL  +E  +A    G     S ++AA    ED+   R
Sbjct: 300 SWTSMIAAFTQIG----------HLLAVETFHAMLLEGVVPTRSTLFAALEGCEDLRVAR 349



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD----LRALFDKM 116
           L N ++  Y + G L  ARD FD MP RD ISWNA+LSA A+ G V+D     RA+  + 
Sbjct: 470 LGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCDLFRAMLQEG 529

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
              + +++   ++  A+ G  +   + FS M  D
Sbjct: 530 FDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGD 563


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/617 (35%), Positives = 343/617 (55%), Gaps = 37/617 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            +L+  +A+ G V     ++DKM   D+ + N  I+ +A  GF  +A QVF ++      
Sbjct: 152 TSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTR 211

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT+ + L  C  +  ++ GKQ+H  +V         V NAL  +Y+K G +++A  +
Sbjct: 212 PNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIV 271

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F+ +  RN++SW   I+G+ ++G  KK +  F  M+  G+ P+E T S +L +C      
Sbjct: 272 FESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDF 331

Query: 268 -----FQT------------------------GRIDDAGRLFHVI-KEKDNVCWTTMIVG 297
                F T                        G +D+A + F  + +   NV W  +I G
Sbjct: 332 IDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAG 391

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y  N K E A+  F  M+ EDV  ++F+ S++  +C+   SL     +H + +   V+ +
Sbjct: 392 YVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESN 451

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           L V+S+LI+ Y +CG  ++A  VF  +   +VVSWNS+I  Y+QNG   +A+ L  K+++
Sbjct: 452 LHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIE 511

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           E  KP S TF++VLSAC H+ L + GQ  F S+   + I P   H +CM+++LGR+  ++
Sbjct: 512 EGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLE 571

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            A+D IK L  KP + IW  LL+ C    +++  E  A  + +LEP +A  Y+ LSNMYA
Sbjct: 572 NALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYA 631

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             GRW D  + R  M+ K + K    SWIE++NK++KF S D+ HPE   +YE+L +L++
Sbjct: 632 EVGRWADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVR 691

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++Q+ G+SP T  VLH    + K + I YHSEKLA+ + L+  P G  PIR++KN+RVC 
Sbjct: 692 QIQDIGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSLPPG-KPIRVLKNLRVCL 750

Query: 658 DCHLFMKFASDIIGRTI 674
           DC+  MK+ S I  R I
Sbjct: 751 DCYSTMKYISRITDRYI 767



 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/541 (35%), Positives = 311/541 (57%), Gaps = 12/541 (2%)

Query: 35   RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI--IS 92
            R N   + + + +H        +++  + + +  YA+   L+  R L   + +  +  ++
Sbjct: 783  RANVYRVYRNISTHRTFQ----SSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLT 838

Query: 93   WNA--LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
            + A  L+S +   G + + R LFDK+P  +   +       A +GF  EAL  FS MQK+
Sbjct: 839  YFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKE 898

Query: 151  RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
               P  +   S L AC  L D R G+ +H  I+  +   + ++ +AL  MY+K G ++KA
Sbjct: 899  GLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKA 958

Query: 211  RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
              +FD + +++LV  N M+SGY ++G   + +BL Q+MQ  G+ P+ V+ + ++    Q 
Sbjct: 959  CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQV 1018

Query: 271  GRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            G       +F ++     E D V WT++I G+ QN    +    F EML +   P   +I
Sbjct: 1019 GDKSMVSEVFRLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTI 1078

Query: 327  SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            SS++ +C  +A+L HG+ +HG A+V+GV+ D+ V SAL+DMY KCG   +A  +F MMP 
Sbjct: 1079 SSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPE 1138

Query: 387  RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            RN V+WNS+I GYA +G   EA+ L++++ + + K D  TF +VL+AC HA + E G++ 
Sbjct: 1139 RNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESL 1198

Query: 447  FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            F  +   + I P L+HYACM++LLGR+  + +A DLIK++P +P+  +W  LL  C   G
Sbjct: 1199 FXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHG 1258

Query: 507  DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
            +I+  E+AA HLFELEP + G  ++LSN+YA  GRW + A ++  MK +   KF   SWI
Sbjct: 1259 NIELAEVAAEHLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 1318

Query: 567  E 567
            E
Sbjct: 1319 E 1319



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 215/479 (44%), Gaps = 80/479 (16%)

Query: 112 LFDKMPIRDSVS----YNTAIAGFANKGFSREALQVFSRMQKDRFE-----PTDYTHVSA 162
           LF+K P R  VS    + +       +G        F+R +    E     P      SA
Sbjct: 62  LFEKTPKRIGVSITESHRSGCTDDPEEGVKEAGF--FTRNETPHVEFGGGFPHRQYVFSA 119

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L+ C +   +  G++ H  +V   LG + FV  +L DMYAK GE+D A  ++D+M + + 
Sbjct: 120 LSFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDA 179

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
            + N +IS Y +NG   +   +F ++  +G  P+  T S +L  C               
Sbjct: 180 ATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAH 239

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G +++A  +F  +++++ + WT  I G+ Q+G  + A
Sbjct: 240 VVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKA 299

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L  F+ M    + P++F+ S V++SC  +     G++ H + +  G+   + V +A+IDM
Sbjct: 300 LKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDM 359

Query: 368 YCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           Y   G  D+A   F  M    + VSWN++I GY  N +  +A+  + ++++E++  + FT
Sbjct: 360 YSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFT 419

Query: 427 FVSVLSAC-----------LHADLF----ERGQNHFDSISAVHGITPSLDH--------- 462
           + ++  AC           +H+ L     E   +   S+   +    SL++         
Sbjct: 420 YSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQIS 479

Query: 463 ------YACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHGE 512
                 +  +I    ++ D  KA+ L++ +    +KP S  + T+LS C+  G ++ G+
Sbjct: 480 DADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQ 538


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/605 (35%), Positives = 352/605 (58%), Gaps = 39/605 (6%)

Query: 1   MKAKHKLRQAIDTL--YSR-GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN 57
           + ++ +L QAI +L   SR G     +    L+  C     ++L K +  H+ +   +  
Sbjct: 25  LSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRP 84

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
            TFL N L++ Y+K G    A  +FD+M  R++ SWN +LS +A+ G ++  R LFDKMP
Sbjct: 85  NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP 144

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            +D VS+NT +  +A  GF  +AL+ +  +++      +Y+    LN C ++ +L   KQ
Sbjct: 145 EKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQ 204

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
            HG+++V     N+ + +++ D YAK  E+  AR LFD M  R++++W  M+SGY     
Sbjct: 205 AHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYA---- 260

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          Q G ++ A  LF ++ EK+ V WT++I G
Sbjct: 261 -------------------------------QWGDVEAARELFDLMPEKNPVAWTSLIAG 289

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y ++     AL LF +M++ ++RPD+F+ SS + + A +ASL HG+ +HG  +   +  +
Sbjct: 290 YARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPN 349

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLL 416
            +V S+LIDMY KCG  +    VF++M  + +VV WN++I+  AQ+G+  EA+ ++D ++
Sbjct: 350 TIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMV 409

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +  +KPD  T + +L+AC H+ L + G   ++SI++ HG+ P+ +HYAC+I+LLGR+   
Sbjct: 410 RLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHF 469

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           D  ++ ++ +P KPN  IW+ LL VC M G+I+ G   A  + EL+P ++  Y++LS+++
Sbjct: 470 DTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQSSAAYVLLSSIH 529

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA GRWE V ++R  M  ++V+K  A SWIEI+NKVH F + DR HP  E+IY  L +L 
Sbjct: 530 AAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLHPLKEVIYLALKQLA 589

Query: 597 KKLQE 601
             ++E
Sbjct: 590 GHMEE 594


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/570 (39%), Positives = 334/570 (58%), Gaps = 41/570 (7%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           + AC  LLD   GK+IH  ++      +VFV  +L  MY++ G +  AR LFD M  R+ 
Sbjct: 4   VKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDR 60

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH- 281
            SWN MISGY +NG   + +D+  EM+L G+  D +TV+++L  C Q G I  +G+L H 
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDIL-SGKLIHL 119

Query: 282 -VIKE---------------------------------KDNVCWTTMIVGYTQNGKEEDA 307
            VIK                                  KD V W T+I GY QNG   +A
Sbjct: 120 YVIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVVSWNTLITGYAQNGLASEA 179

Query: 308 LILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           + ++  M   E++ P++ +  S++ + + + +L  G  +HG+ +   +  D+ V + LID
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLID 239

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KCG  DDA ++F  +P +N V WN+MI+ Y  +G   +AL L+ ++  E +KPD  T
Sbjct: 240 MYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHIT 299

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           FVS+LSAC H+ L    Q  F+ +   +GI PSL HY CM++L GR+ +++ A + IK +
Sbjct: 300 FVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKM 359

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +P++  W  LL+ C + G+I+ G+ A+  LFE++  N G Y++LSN+YA  G+WE V 
Sbjct: 360 PIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVD 419

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            +RS  + + ++K   +S I ++NKV  F + ++THP+ E IY EL  L  K++  G+ P
Sbjct: 420 DVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVP 479

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
           +   VL D +E+EK   +  HSE+LA+AY +I      TPIRI KN+RVCGDCH   KF 
Sbjct: 480 DFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPK-TPIRIFKNLRVCGDCHTVTKFI 538

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S I  R II+RDS+RFHHF GG CSC D W
Sbjct: 539 SIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 169/347 (48%), Gaps = 39/347 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +L+  ++R G V D R LFD MP RD  S+N  I+G+   G + EAL +   M+
Sbjct: 28  DVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMR 87

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +    T  S L  CAQ+ D+  GK IH  ++   L   +FV NAL +MYAK G + 
Sbjct: 88  LEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLG 147

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF----------------------- 245
            A+ +F  +  +++VSWN +I+GY +NG   + I+++                       
Sbjct: 148 HAQKVFGLL-IKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAY 206

Query: 246 -------QEMQLLGLNPDEVTVSNI-LGACF-----QTGRIDDAGRLFHVIKEKDNVCWT 292
                  Q M++ G        S++ +G C      + G++DDA  LF+ +  K++V W 
Sbjct: 207 SHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWN 266

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVV 351
            MI  Y  +G  E AL LF EM +E V+PD  +  S++S+C+    +   Q   +     
Sbjct: 267 AMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEE 326

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMIN 397
            G+   L     ++D++ + G  + A+     MP + +  +W +++N
Sbjct: 327 YGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLN 373



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 158/283 (55%), Gaps = 16/283 (5%)

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           SGKL +   +   +     +S NAL++ +A+ GS+   + +F  + I+D VS+NT I G+
Sbjct: 113 SGKLIHLYVIKHGLEFELFVS-NALINMYAKFGSLGHAQKVFGLL-IKDVVSWNTLITGY 170

Query: 132 ANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           A  G + EA++V+  M++ +   P   T VS L A + +  L++G +IHG+++   L  +
Sbjct: 171 AQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSD 230

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           VFV   L DMY K G++D A  LF ++  +N V WN MIS Y  +G  +K ++LF+EM+ 
Sbjct: 231 VFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKA 290

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEE 305
             + PD +T  ++L AC  +G + DA   F++++E+  +      +  M+  + + G+ E
Sbjct: 291 ERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELE 350

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
            A   FN +    ++PD  +  +++++C       HG +  GK
Sbjct: 351 MA---FNFIKKMPIQPDASAWGALLNACR-----IHGNIELGK 385


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/722 (32%), Positives = 377/722 (52%), Gaps = 81/722 (11%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH-------MDLNFYEPNTTFLHNRLLHFYA 70
           G   T   +  L+  C+ +  ++L + + +H       MDL        ++   LLH YA
Sbjct: 102 GVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDL--------YVSTALLHMYA 153

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G L+ A+ LF+ +  +D                             RD V++N  IA 
Sbjct: 154 KCGHLYQAQTLFNSISHQD-----------------------------RDIVAWNAMIAA 184

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           F+      + +   ++MQ+    P   T VS L    Q   L +GK IH   +      N
Sbjct: 185 FSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDN 244

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ- 249
           V ++ AL DMYAK   +  AR +F+ +N +N V W+ MI GY+ +      + L+ +M  
Sbjct: 245 VVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLC 304

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLF-HVIKE----------------------- 285
           + GLNP   T++ +L AC Q   +    +L  H+IK                        
Sbjct: 305 IYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMD 364

Query: 286 -----------KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
                      KD V ++ +I G  QNG  E AL++F +M S  + P   ++ +++ +C+
Sbjct: 365 NAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACS 424

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            LA+L HG   HG  VV G  +D  + +A+IDMY KCG    +  +F+ M  R+++SWN+
Sbjct: 425 HLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNT 484

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI GY  +G  +EAL+L+ +L    LKPD  T ++VLSAC H+ L   G+  F S+S   
Sbjct: 485 MIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNF 544

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            I P + HY CM++LL R+ ++D+A   I+ +P  PN  IW  LL+ C    +I+ GE  
Sbjct: 545 NIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQV 604

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           ++ +  L P   G ++++SN+Y++ GRW+D A IRS  +    KK    SW+EI   +H 
Sbjct: 605 SKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHV 664

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F+   ++HP++  I ++L +L+ ++++ G+  ++  VLHD +EEEK + + YHSEK+A+A
Sbjct: 665 FIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIA 724

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + ++      + I + KN+R+C DCH  +KF + +  R I +RD++RFHHF  G C+C+D
Sbjct: 725 FGILNTSPS-SRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQD 783

Query: 695 NW 696
            W
Sbjct: 784 FW 785



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 137/580 (23%), Positives = 261/580 (45%), Gaps = 91/580 (15%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           H     +Q  R +FD++P    V +N  I  +A  G  ++++ ++  M +    PT++T 
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN- 218
              L AC+ L  L+ G+ IH    +  L  +++V  AL  MYAK G + +A+ LF+ ++ 
Sbjct: 111 PFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISH 170

Query: 219 -NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL------------- 264
            +R++V+WN MI+ +  +    + I    +MQ  G+ P+  T+ +IL             
Sbjct: 171 QDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGK 230

Query: 265 -------------GACFQTGRID---------DAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                            QT  +D          A ++F+ + +K++VCW+ MI GY  + 
Sbjct: 231 AIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHD 290

Query: 303 KEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
              DAL L+++ML    + P   ++++++ +CA+L  L  G+ +H   +  G+D D  V 
Sbjct: 291 SISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVG 350

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           ++LI MY KCG+ D+A    + M  ++ VS++++I+G  QNG   +AL ++ ++    + 
Sbjct: 351 NSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIA 410

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P   T +++L AC H    + G       + V G T        +I++  +   +  + +
Sbjct: 411 PYLETMIALLPACSHLAALQHGTC-CHGYTVVRGFTNDTSICNAIIDMYSKCGKITISRE 469

Query: 482 L----------------------------------IKSLPHKPNSLIWSTLLSVCAMKGD 507
           +                                  +++L  KP+ +    +LS C+  G 
Sbjct: 470 IFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGL 529

Query: 508 IKHGEM---AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK-SKNVKKFAAY 563
           +  G+    +    F ++P     YI + ++ A  G  ++  +    M    NV+ + A 
Sbjct: 530 VTEGKYWFSSMSQNFNIKP-RMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGA- 587

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
                       ++  RTH   E + E++SK I+ L   G
Sbjct: 588 -----------LLAACRTHKNIE-MGEQVSKKIQLLGPEG 615



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 178/374 (47%), Gaps = 47/374 (12%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D L   G   T      ++  C ++ D++  K+L  HM  +  + +TT + N L+  YAK
Sbjct: 301 DMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTT-VGNSLISMYAK 359

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
            G +  A    D+M  +D +S++A++     SG VQ+                       
Sbjct: 360 CGIMDNAVGFLDEMIAKDTVSYSAII-----SGCVQN----------------------- 391

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
              G++ +AL +F +MQ     P   T ++ L AC+ L  L+ G   HG  VV     + 
Sbjct: 392 ---GYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDT 448

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            + NA+ DMY+K G+I  +R +FDRM NR+++SWN MI GY  +G   + + LFQE+Q L
Sbjct: 449 SICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQAL 508

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEED 306
           GL PD+VT+  +L AC  +G + +    F  + +  N+      +  M+    + G  ++
Sbjct: 509 GLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDE 568

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSA 363
           A      M      P+     +++++C    ++  G+ V  K  +LG +     +L+S  
Sbjct: 569 AYTFIQRM---PFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMS-- 623

Query: 364 LIDMYCKCGVTDDA 377
             ++Y   G  DDA
Sbjct: 624 --NIYSSVGRWDDA 635



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/455 (24%), Positives = 187/455 (41%), Gaps = 80/455 (17%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I  A  +F  I +   V W  MI  Y  +G  + ++ L+  ML   V P  F+   ++ +
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVV 390
           C+ L +L  G+++H  A +LG+  DL VS+AL+ MY KCG    A T+FN +    R++V
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN----- 445
           +WN+MI  ++ +    + +    ++ Q  + P+S T VS+L     A+   +G+      
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 446 ----HFDSISAVHGITPSLDHYA-C--------MINLLGRSSDVDKAV------------ 480
                FD++      T  LD YA C        + N + + +DV  +             
Sbjct: 237 IRNFFFDNVVLQ---TALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSIS 293

Query: 481 -------DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF----ELEPINAGPY 529
                  D++      P     +T+L  CA   D+K G+    H+     +L+       
Sbjct: 294 DALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSL 353

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I   +MYA CG  ++       M +K+   ++A     + N                  Y
Sbjct: 354 I---SMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNG-----------------Y 393

Query: 590 EELSKLI-KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
            E + LI +++Q +G +P  + ++        +   C H   L    C     HG T +R
Sbjct: 394 AEKALLIFRQMQSSGIAPYLETMI-------ALLPACSHLAALQHGTCC----HGYTVVR 442

Query: 649 IMKN-IRVCGD-CHLFMKFASDIIGRTIILRDSNR 681
              N   +C     ++ K     I R I  R  NR
Sbjct: 443 GFTNDTSICNAIIDMYSKCGKITISREIFDRMQNR 477


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 249/766 (32%), Positives = 394/766 (51%), Gaps = 87/766 (11%)

Query: 8    RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
            R   D +  R +A+    ++ ++    RV   E A  L   M     EPN  F+   L+ 
Sbjct: 328  RYVFDEMRHRNEAS----WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNG-FMVASLIT 382

Query: 68   FYAKSGKL----FYARDLFDKMP-LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
              ++SG +    F       K   L D+    AL+  +   G V + + LF++MP  + V
Sbjct: 383  ACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVV 442

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
            S+ + + G+++ G   E L V+ RM+++       T  +  ++C  L D   G Q+ G I
Sbjct: 443  SWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHI 502

Query: 183  VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +      +V V N+L  M++    +++A ++FD MN  +++SWN MIS Y  +G  ++ +
Sbjct: 503  IQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESL 562

Query: 243  DLFQEMQ-----------------------------------LLGLNPDEVTVSNILGAC 267
              F  M+                                    LGL+ +    + +L   
Sbjct: 563  RCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLY 622

Query: 268  FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
             + GR +DA  +F  + E+D + W +M+  Y Q+GK  D L +  E+L    +PD+ + +
Sbjct: 623  SEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMG-KPDRVTWN 681

Query: 328  SVV----------------------------------SSCAKLASLYHGQVVHGKAVVLG 353
            +++                                  ++ A LA L  GQ +HG  + LG
Sbjct: 682  ALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLG 741

Query: 354  VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALA 410
             + DL V++A +DMY KCG   D   V  M+P    R+ +SWN +I+ +A++G   +A  
Sbjct: 742  FESDLHVTNAAMDMYGKCGEMHD---VLKMLPQPINRSRLSWNILISAFARHGCFQKARE 798

Query: 411  LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
             + ++L+   KPD  TFVS+LSAC H  L + G  ++DS++   G+ P ++H  C+I+LL
Sbjct: 799  TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLL 858

Query: 471  GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
            GRS  +  A   IK +P  PN L W +LL+ C + G+++     A HL EL+P +   Y+
Sbjct: 859  GRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYV 918

Query: 531  MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
            + SN+ A  G+WEDV ++R  M S N+KK  A SW+++ +KVH F   ++ HP+   I  
Sbjct: 919  LYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISA 978

Query: 591  ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            +L +L+K  +EAG+ P+T   LHD  EE+K  ++  HSE+LALA+ LI  P   T +RI 
Sbjct: 979  KLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESST-LRIF 1037

Query: 651  KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+RVCGDCH   KF S I+GR I+LRD  RFHHF GG CSC D W
Sbjct: 1038 KNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 156/628 (24%), Positives = 261/628 (41%), Gaps = 164/628 (26%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L +A+  L S         Y +++  C      +    + +H+  N +  +   L+ +L
Sbjct: 13  RLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDL-HLNTKL 71

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSA-------------------------- 99
           + FY K G +  AR++FD MP R ++SW A++S                           
Sbjct: 72  IIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANH 131

Query: 100 -----HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
                H++ G ++D   LF  M  RD VS+N  I G+A +GF+ ++  +F  M +    P
Sbjct: 132 ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 191

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKI---------VVGNLGGNVFVR----------- 194
             YT  S L A A+   L    QIHG I         +V  L  N + +           
Sbjct: 192 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 251

Query: 195 ---------------------------NALTDMYAKGGEID------------------- 208
                                      NAL DMYAK GEI+                   
Sbjct: 252 KGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 311

Query: 209 --------------KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
                          AR++FD M +RN  SW+ M+SGY++ G  ++ + LF +M  LG+ 
Sbjct: 312 LISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 371

Query: 255 PDEVTVSNILGACFQTGRIDDAG------------------------------------R 278
           P+   V++++ AC ++G + D G                                    +
Sbjct: 372 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 431

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           LF  + + + V WT+++VGY+ +G   + L ++  M  E V  ++ + ++V SSC  L  
Sbjct: 432 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 491

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
              G  V G  +  G +D + V+++LI M+      ++A  VF+ M   +++SWN+MI+ 
Sbjct: 492 QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 551

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           YA +G   E+L  +  +   + + +S T  S+LS C   D  + G+        +HG+  
Sbjct: 552 YAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGR-------GIHGLVV 604

Query: 459 --SLDHYACMINLL-------GRSSDVD 477
              LD   C+ N L       GRS D +
Sbjct: 605 KLGLDSNVCICNTLLTLYSEAGRSEDAE 632



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 176/396 (44%), Gaps = 57/396 (14%)

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
           + I    N G   EAL++ S     R +P+ Y  +  L  C      ++G  IH  ++  
Sbjct: 3   SKIQSACNLGRLAEALKLLSS-NPTRLDPSLYLKI--LQLCIDKKAKKQGHLIHTHLITN 59

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G ++ +   L   Y K G++  AR +FD M  R++VSW  M+SGY +NG+ +K   LF
Sbjct: 60  GFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLF 119

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
            +M+  G+  +   V +    C   G+++DA  LF  + E+D V W  MI GY   G  +
Sbjct: 120 SDMRHCGVKANHALV-DFHSKC---GKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFAD 175

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG------------ 353
           D+  +F  ML   + PD +++ SV+ + A+   L     +HG    LG            
Sbjct: 176 DSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLI 235

Query: 354 -------------------VDDDLLVSS----------------ALIDMYCKCGVTDDAW 378
                              +  DL  S+                ALIDMY K G  +DA 
Sbjct: 236 NAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAK 295

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
             F+ M  +NV+SW S+I+GYA++G    A A Y  +  E    +  ++ ++LS  +   
Sbjct: 296 RAFDEMEEKNVISWTSLISGYAKHGYGHMAHARY--VFDEMRHRNEASWSTMLSGYVRVG 353

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           L+E     F  +  + G+ P+    A +I    RS 
Sbjct: 354 LYEEAVGLFCQMWGL-GVEPNGFMVASLITACSRSG 388



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 116/299 (38%), Gaps = 47/299 (15%)

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+  +AL L +   S   R D      ++  C    +   G ++H   +  G   DL ++
Sbjct: 12  GRLAEALKLLS---SNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           + LI  Y K G    A  VF+ MP R+VVSW +M++GY+QNG+  +A  L+  +    +K
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 422 PDSFTFVSVLSAC--------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +    V   S C        L   + ER    ++++   + +    D   CM   + R 
Sbjct: 129 ANH-ALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRG 187

Query: 474 SDVDKAVDL----------------------IKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             V     L                      I  L +    ++   L++  A  G ++  
Sbjct: 188 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 247

Query: 512 E-----MAARHLFELEPI-----NAGPYIM---LSNMYAACGRWEDVASIRSSMKSKNV 557
           +     M  + LF    +     + G Y M   L +MYA  G  ED       M+ KNV
Sbjct: 248 KDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNV 306


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/641 (34%), Positives = 359/641 (56%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   NAL++ + + G V+  R LFD+MP RD +S+N  I+G+   G   E L++F  M+
Sbjct: 230 DIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMR 289

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   T  S ++AC  L D R G+ IH  ++      ++ V N+LT MY   G   
Sbjct: 290 GLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWR 349

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  LF RM+ +++VSW  MISGY  N  P+K ID ++ M    + PDE+TV+ +L AC 
Sbjct: 350 EAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACA 409

Query: 269 QTGR-----------------------------------IDDAGRLFHVIKEKDNVCWTT 293
             G                                    ID A  +FH I  K+ + WT+
Sbjct: 410 TLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTS 469

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G   N +  +ALI F +M    ++P+  ++++ +++CA++ +L  G+ +H   +  G
Sbjct: 470 IIAGLRLNNRCFEALIFFRQM-KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTG 528

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           V  D  + +AL+DMY +CG  + AW  FN    ++V SWN ++ GY++ GQ    + L+D
Sbjct: 529 VGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFD 587

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++++  ++PD  TF+S+L  C  + +  +G  +F  +   +G+TP+L HYAC+++LLGR+
Sbjct: 588 RMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRA 646

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            ++ +A   I+ +P  P+  +W  LL+ C +  +I  GE++A+ +FEL+  + G YI+L 
Sbjct: 647 GELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLC 706

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA CG+W +VA +R  MK   +   A  SW+E+  KVH F+S+D+ HP+T+ I   L 
Sbjct: 707 NLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLD 766

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
              +K+ E G + +++    D  E  + +  C HSE+ A+A+ LI    G+ PI + KN+
Sbjct: 767 GFYEKMSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGM-PIWVTKNL 825

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C  CH  +KF S  + R I +RDS  FHHF  G CSC D
Sbjct: 826 NMCESCHDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 119/366 (32%), Positives = 192/366 (52%), Gaps = 37/366 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRF 152
           NA L+   R G++ D   +F KM  R+  S+N  + G+A +G+  EA+ ++ RM      
Sbjct: 133 NAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGV 192

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P  YT    L  C  + DL RG+++H  +V      ++ V NAL  MY K G++  AR 
Sbjct: 193 KPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARL 252

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           LFDRM  R+++SWN MISGY +NG   + + LF  M+ L ++PD +T+++++ AC     
Sbjct: 253 LFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGD 312

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            G   +A +LF  +  KD V WTTMI G
Sbjct: 313 RRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISG 372

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y  N   E A+  +  M  + V+PD+ ++++V+S+CA L  L  G  +H  A+   +   
Sbjct: 373 YEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY 432

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           ++V++ LI+MY KC   D A  +F+ +P +NV+SW S+I G   N +  EAL  + + ++
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFF-RQMK 491

Query: 418 ENLKPD 423
             L+P+
Sbjct: 492 MTLQPN 497



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 188/413 (45%), Gaps = 50/413 (12%)

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G    G   EA+++ + MQ+ R    +   V+ +  C        G +++   +      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSL 127

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           +V + NA   M+ + G +  A ++F +M+ RNL SWN+++ GY K G   + I L+  M 
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 250 LLG-LNPDEVTVSNILGAC-----------------------------------FQTGRI 273
            +G + PD  T   +L  C                                    + G +
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDV 247

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             A  LF  +  +D + W  MI GY +NG   + L LF  M    V PD  +++SV+S+C
Sbjct: 248 KSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISAC 307

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L     G+ +H   +  G   D+ V ++L  MY   G   +A  +F+ M  +++VSW 
Sbjct: 308 ELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWT 367

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI+GY  N    +A+  Y  + Q+++KPD  T  +VLSAC  A L        D+   +
Sbjct: 368 TMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSAC--ATL-----GDLDTGVEL 420

Query: 454 H--GITPSLDHYAC----MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           H   I   L  Y      +IN+  +   +DKA+D+  ++P K N + W+++++
Sbjct: 421 HKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK-NVISWTSIIA 472



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 9/246 (3%)

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G   NGK E+A+ L N M    V  D+    ++V  C    +   G  V+  A+      
Sbjct: 68  GLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSL 127

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
            + + +A + M+ + G   DAW VF  M  RN+ SWN ++ GYA+ G   EA+ LY ++L
Sbjct: 128 SVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRML 187

Query: 417 Q-ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSS 474
               +KPD +TF  VL  C       RG+  H   +   +G    +D    +I +  +  
Sbjct: 188 WVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVR--YGYELDIDVVNALITMYVKCG 245

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM-LS 533
           DV  A  L   +P + + + W+ ++S     G    G    +  F +  ++  P +M L+
Sbjct: 246 DVKSARLLFDRMPRR-DIISWNAMISGYFENG---MGHEGLKLFFAMRGLSVDPDLMTLT 301

Query: 534 NMYAAC 539
           ++ +AC
Sbjct: 302 SVISAC 307



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 2/145 (1%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A  L   + L D +  NALL  + R G +      F+    +D  S+N  + G++
Sbjct: 517 GKEIHAHVLRTGVGLDDFLP-NALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYS 574

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
            +G     +++F RM K R  P + T +S L  C +   +R+G     K+    +  N+ 
Sbjct: 575 ERGQGSVVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKMEEYGVTPNLK 634

Query: 193 VRNALTDMYAKGGEIDKARWLFDRM 217
               + D+  + GE+ +A     +M
Sbjct: 635 HYACVVDLLGRAGELQEAHKFIQKM 659


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/640 (35%), Positives = 343/640 (53%), Gaps = 72/640 (11%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +  AI     +   REA+Q+  R +K    P   T+ + +  C+Q   L  GK++H  I 
Sbjct: 59  FGEAIDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIR 114

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI-------------- 229
                  + + N +  MYAK G +  AR +FD M  R++ SWN+M+              
Sbjct: 115 TSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARN 174

Query: 230 -----------------SGYLKNGQPKKCIDLFQEMQLL--------------------- 251
                            +GY+K  QP++ + L+  MQ +                     
Sbjct: 175 LFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIK 234

Query: 252 ---------------GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                          GL+ DEV  S+++    + G ID+A  +F  I +KD V WT+MI 
Sbjct: 235 CIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMID 294

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y ++ +  +   LF+E++    RP++++ S V+++CA L +   G+ VHG    +G D 
Sbjct: 295 RYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDP 354

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
               SS+LIDMY KCG  + A  V +  P  ++VS  S+I GYAQNG+  EAL  +D LL
Sbjct: 355 YSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLL 414

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +   KPD  TFV+VLSAC HA L E+G   F SI+  H +T + DHY C+++LL RS   
Sbjct: 415 KSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRF 474

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++   ++  +P KP+  +W+++L  C+  G+I   E AA+ LF++EP N   Y+ ++N+Y
Sbjct: 475 EQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIY 534

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           AA G+WE+   +R  M+   + K    SW EI  K H F++ D +HP    I E L +L 
Sbjct: 535 AAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELR 594

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           KK++E G+ P T LVLHD ++E+K +++ YHSEKLA+A+ ++    G T I++ KN+R C
Sbjct: 595 KKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG-TAIKVFKNLRSC 653

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH  +KF S I  R I +RDS RFH F  G CSC+D W
Sbjct: 654 VDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 134/440 (30%), Positives = 220/440 (50%), Gaps = 50/440 (11%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           LR+A+  L  R +      Y  L+  C++   +E  K++  H+  + + P    + NR+L
Sbjct: 72  LREAVQ-LLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIV-IWNRIL 129

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             YAK G L  AR +FD+MP RD+ SWN +++ +A  G +++ R LFD+MP RDS S+  
Sbjct: 130 GMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTA 189

Query: 127 AIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
            + G+  K    EAL ++S MQ+    +P  +T  SA+ A A +  +RRGK+IHG IV  
Sbjct: 190 MVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRA 249

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  +  + ++L DMY K G ID+AR +FD++ ++++VSW  MI  Y K+ + ++   LF
Sbjct: 250 GLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLF 309

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
            E+      P+E T S +L AC                                    + 
Sbjct: 310 SELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKC 369

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G I+ A  +     + D V  T++I GY QNGK ++AL  F+ +L    +PD  +  +V+
Sbjct: 370 GNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVL 429

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSS----ALIDMYCKCGVTDDAWTVFNMM 384
           S+C      + G V  G      + +  DL  +S     L+D+  + G  +   +V + M
Sbjct: 430 SACT-----HAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEM 484

Query: 385 PTR-NVVSWNSMINGYAQNG 403
           P + +   W S++ G +  G
Sbjct: 485 PMKPSKFLWASVLGGCSTYG 504



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 8/256 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W++L+  + + G + + R +FDK+  +D VS+ + I  +      RE   +FS + 
Sbjct: 254 DEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSELI 313

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P +YT    LNACA L     G+Q+HG +         F  ++L DMY K G I+
Sbjct: 314 GSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIE 373

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR + D     +LVS   +I GY +NG+P + +  F  +   G  PD VT  N+L AC 
Sbjct: 374 SARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSACT 433

Query: 269 QTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++     F+ I EK ++      +T ++    ++G+ E    + +EM    ++P K
Sbjct: 434 HAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEM---PMKPSK 490

Query: 324 FSISSVVSSCAKLASL 339
           F  +SV+  C+   ++
Sbjct: 491 FLWASVLGGCSTYGNI 506


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 342/603 (56%), Gaps = 37/603 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL+  + + G++   + LFD+   R+ V YNT ++ +A +G +REAL +   M +    
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T +SA++A AQL+DL  GK  HG ++   L G   + N + DMY K G+ + A  +
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M+N+ +VSWN + +G+++NG                                    +
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGD-----------------------------------V 415

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           + A  +F+ I E++ V W TMI G  Q    EDA+ LF EM  E ++ D+ ++  + S+C
Sbjct: 416 ESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASAC 475

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
             L +    + VH      G+  D+ +++AL+DM+ +CG    A  VFN M  R+V +W 
Sbjct: 476 GYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWT 535

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           + I   A  G    A  L++++L + +KPD   FV VL+AC H    E+G  H  S+   
Sbjct: 536 AAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGL-HIFSLMED 594

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI+P ++HY CM++LLGR+  + +A DLIKS+P +PN ++W +LL+ C +  +++    
Sbjct: 595 HGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATY 654

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  + EL P  AG +++LSN+YA+ G+W DVA +R +++ K V+K    S ++++  +H
Sbjct: 655 AAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIH 714

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F S D +HPE   I   L ++  +  +AG  P+   VL D  E+EK   +  HSEKLA+
Sbjct: 715 EFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAI 774

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI     + PIR++KN+R+C DCH F K AS I  R II+RD+NRFH F  G CSC 
Sbjct: 775 AFGLIATGRSM-PIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCC 833

Query: 694 DNW 696
           D W
Sbjct: 834 DYW 836



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 207/449 (46%), Gaps = 68/449 (15%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N+ I G+++ G  REA+ ++ RM      P  YT    L+ C ++     G Q+HG +V 
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +VF++N L   YA+ G +D    +F+ M+ RN+VSW  +I GY +  +PK+ + L
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----------------------------------FQ 269
           F EM   G+ P  VT+  ++ AC                                    +
Sbjct: 220 FFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMK 279

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G ID A RLF    +++ V + T++  Y + G   +AL + +EML +  RPD+ ++ S 
Sbjct: 280 CGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSA 339

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV---------------- 373
           +S+ A+L  L++G+V HG  +  G++    + + +IDMY KCG                 
Sbjct: 340 ISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTV 399

Query: 374 ---------------TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
                           + AW VFN +P RN V WN+MI+G  Q     +A+ L+ ++  E
Sbjct: 400 VSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGE 459

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +K D  T + + SAC +    E  +     I   +GI   +     ++++  R  D   
Sbjct: 460 GIKADRVTMMGIASACGYLGAPELAKWVHTYIEK-NGIPCDMRLNTALVDMFARCGDPQS 518

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           A+ +   +  +  S  W+  +   AM+G+
Sbjct: 519 AMQVFNKMTERDVS-AWTAAIGTMAMEGN 546



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 204/460 (44%), Gaps = 95/460 (20%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI------DKARWLF- 214
           +L  C  L  L   KQ+H +I    L     + + LT +   G EI      D AR  F 
Sbjct: 31  SLRCCKTLNQL---KQLHCQITKNGLDQ---IPSTLTKLVNAGAEIASPESLDYARKAFE 84

Query: 215 ----DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-- 268
               D  ++  L   N +I GY   G  ++ I L+  M +LG+ P+  T   +L  C   
Sbjct: 85  LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKI 144

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G +D   ++F  + E++ V WT++I
Sbjct: 145 AAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLI 204

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY +  + ++A+ LF EM+   +RP   ++  V+S+CAKL  L  G+ V      LG+ 
Sbjct: 205 CGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLK 264

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            + ++ +AL+DMY KCG  D A  +F+    RN+V +N++++ YA+ G   EALA+ D++
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324

Query: 416 LQENLKPDSFTFVSVLSA-----------CLHADLFERGQNHFDSISAVHGITPSLDHY- 463
           LQ+  +PD  T +S +SA             H  +   G   +DSI  V      +D Y 
Sbjct: 325 LQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV-----IIDMYM 379

Query: 464 -------ACMI-NLLG---------------RSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                  AC + +L+                R+ DV+ A ++   +P + N++ W+T++S
Sbjct: 380 KCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPER-NAVFWNTMIS 438

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
               K   +      R + + E I A    M+  + +ACG
Sbjct: 439 GLVQKSLFEDAIELFREM-QGEGIKADRVTMM-GIASACG 476



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 115/225 (51%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N ++  Y K GK   A  +FD M  + ++SWN+L +   R+G V+    +F+++P R+
Sbjct: 370 IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERN 429

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +V +NT I+G   K    +A+++F  MQ +  +    T +   +AC  L      K +H 
Sbjct: 430 AVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHT 489

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            I    +  ++ +  AL DM+A+ G+   A  +F++M  R++ +W   I      G  + 
Sbjct: 490 YIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEG 549

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
              LF +M + G+ PD V    +L AC   G+++    +F ++++
Sbjct: 550 ATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED 594



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +   ELAK + ++++ N   P    L+  L+  +A+ G    A  +F+KM  RD+ +
Sbjct: 475 CGYLGAPELAKWVHTYIEKNGI-PCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA 533

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           W A +   A  G+ +    LF++M I+    D V +   +   ++ G   + L +FS M+
Sbjct: 534 WTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME 593

Query: 149 KDRFEP 154
                P
Sbjct: 594 DHGISP 599



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NS+I GY+  G   EA+ LY ++L   + P+ +TF  VLS C     F  G     S+  
Sbjct: 100 NSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
           + G+   +    C+I+       +D    + + +  + N + W++L+   A +GD    +
Sbjct: 160 M-GLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSER-NVVSWTSLICGYA-RGD--RPK 214

Query: 513 MAARHLFELEPINAGP-YIMLSNMYAACGRWEDV 545
            A    FE+      P  + +  + +AC +  D+
Sbjct: 215 EAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDL 248


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 343/614 (55%), Gaps = 40/614 (6%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA--CAQLLDLRRGKQIH 179
           VS+   I+G A       AL  F+ M +    P D+T  SA  A  CA       G QIH
Sbjct: 77  VSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIH 136

Query: 180 G-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
              +  G L G+ FV  A  DMY K G +  AR LF+ M NRN+++WN +++  + +G+P
Sbjct: 137 ALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRP 196

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---------------------------- 270
            +    +  ++  G  P+ V+V     AC                               
Sbjct: 197 LETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAM 256

Query: 271 ----GRIDDAGR---LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
               G+   AG+   +F  ++ +++V W +MIV Y Q+G EEDAL ++    +    P  
Sbjct: 257 VDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEPTD 316

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F +SSV+++CA L  L  G+ +H  AV   +D ++ V+SAL+DMY KCG  +DA  VF  
Sbjct: 317 FMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLD 376

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFER 442
           MP RN+V+WN+MI GYA  G    ALA++D +++     P+  T V+V++AC    L + 
Sbjct: 377 MPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKD 436

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G   FD++    G+ P  +HYAC+++LLGR+   ++A ++I+ +P +P+  +W  LL  C
Sbjct: 437 GYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGAC 496

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            M G  + G +A+  LFEL+P ++G +++LSNM A+ GRW +   +R  MK+  +KK   
Sbjct: 497 KMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPG 556

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SWI   N VH F ++D  H     I   L+KL K++Q +G+ P+T+  L+D +EEEK  
Sbjct: 557 CSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEKET 616

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            +  HSEKLALA+ LI  P  V PIRI KN+R+C DCH   KF S I+GR II+RD+NRF
Sbjct: 617 EVFQHSEKLALAFGLIHIPPSV-PIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNRF 675

Query: 683 HHFVGGNCSCKDNW 696
           H+F    CSCKD W
Sbjct: 676 HYFKQFECSCKDYW 689



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 173/402 (43%), Gaps = 69/402 (17%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           Y P   F+    +  Y K+G L  AR LF++MP R++I+WNA+++            A+ 
Sbjct: 144 YLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMT-----------NAVI 192

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D  P+                    E  + +  +++    P   +  +  NACA  + L 
Sbjct: 193 DGRPL--------------------ETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLS 232

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q HG +V      +V V NA+ D Y K     KAR +FD M  RN VSW  MI  Y 
Sbjct: 233 LGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYA 292

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------- 268
           ++G  +  + ++   +  G  P +  VS++L  C                          
Sbjct: 293 QHGAEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIF 352

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SE 317
                     + G ++DA ++F  + E++ V W  MI GY   G  ++AL +F+ M+ S 
Sbjct: 353 VASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSG 412

Query: 318 DVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
              P+  ++ +V+++C++      G ++        GV+      + ++D+  + G+ + 
Sbjct: 413 GTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEER 472

Query: 377 AWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQ 417
           A+ +   MP R  +S W +++     +G+        +KL +
Sbjct: 473 AYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKLFE 514



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+  T+   + ++  C  +  +   + L +    +  + N  F+ + L+  Y K G +  
Sbjct: 311 GEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANI-FVASALVDMYGKCGGVED 369

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN-----TAIAGFA 132
           A  +F  MP R++++WNA++  +A  G  Q+  A+FD M      S N       I   +
Sbjct: 370 AEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACS 429

Query: 133 NKGFSREALQVFSRMQKDRF--EP 154
             G +++  ++F  M ++RF  EP
Sbjct: 430 RGGLTKDGYELFDTM-RERFGVEP 452



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 342 GQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           G+  H +A+ +L       + + L+++Y K  +   A +     P   VVS+ + I+G A
Sbjct: 28  GRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAA 87

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVL--SACLHADLFERGQNHFDSISAVHGITP 458
           Q+ + L AL+ +  +L+  L+P+ FTF S    +AC        G     +++   G  P
Sbjct: 88  QHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGP-QIHALALRFGYLP 146

Query: 459 SLDHYAC-MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
                +C  +++  ++  +  A  L + +P++ N + W+ +++   + G
Sbjct: 147 GDPFVSCAAMDMYFKTGCLGLARRLFEEMPNR-NVIAWNAVMTNAVIDG 194


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/609 (37%), Positives = 336/609 (55%), Gaps = 75/609 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TFL N L+  YA+ G+L  AR +FD +PLR+  S+NALLSA+AR G   + RALF+ +P 
Sbjct: 52  TFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPD 111

Query: 119 RDSVSYNTAIAGFA--NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
            D  SYN  +A  A   +G + +AL+  + M  D F    Y+  SAL+ACA   DLR G+
Sbjct: 112 PDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGE 171

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+HG +       +V +  AL DMYAK      AR +FD M  RN+VSWN +I+ Y +NG
Sbjct: 172 QVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNG 231

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
              + + LF EM   G  PDEVT+S+++ AC                             
Sbjct: 232 PVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLN 291

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG----------------------- 297
                   + GR  +A  +F  +  +  V  T+++ G                       
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 298 --------YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH--- 346
                   Y QNG+EE+A+ LF ++  + + P  ++  +V+++C  +A L  GQ  H   
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 411

Query: 347 ---GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
              G     G + D+ V ++L+DMY K G  DD   VF  M  R+ VSWN+MI GYAQNG
Sbjct: 412 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 471

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           +  +AL L++++L  N  PDS T + VLSAC H+ L + G+ HF  ++  HGITPS DHY
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHY 531

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  + +A +LIK +P +P+S++W++LL  C +  +++ GE  A  LFEL+P
Sbjct: 532 TCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDP 591

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            N+GPY++LSNMYA  G+W DV  +R SMK + V K    SWIEI +K++ F++ D  HP
Sbjct: 592 ENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFLARDNRHP 651

Query: 584 ETEIIYEEL 592
               I+  L
Sbjct: 652 CRNEIHSTL 660



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/362 (31%), Positives = 193/362 (53%), Gaps = 21/362 (5%)

Query: 42  AKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA 101
            +++ +HM       +   L+N L+  YAK G+ + AR +FD MP R ++S  ++L+ +A
Sbjct: 271 GRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYA 330

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
           +S +V+D + +F +M  ++ +++N  IA +A  G   EA+++F ++++D   PT YT+ +
Sbjct: 331 KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 390

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNL------GGNVFVRNALTDMYAKGGEIDKARWLFD 215
            LNAC  +  L+ G+Q H  ++            +VFV N+L DMY K G ID    +F+
Sbjct: 391 VLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFE 450

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
           RM  R+ VSWN MI GY +NG+ K  + LF+ M     NPD VT+  +L AC  +G +D+
Sbjct: 451 RMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDE 510

Query: 276 AGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
             R FH + E   +      +T M+    + G  ++A  L  +M +E   PD    +S++
Sbjct: 511 GRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTE---PDSVLWASLL 567

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            +C    ++  G+   G+   L  ++    +L+S    +MY + G   D + V   M  R
Sbjct: 568 GACRLHKNVELGERTAGRLFELDPENSGPYVLLS----NMYAEMGKWADVFRVRRSMKDR 623

Query: 388 NV 389
            V
Sbjct: 624 GV 625



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 137/282 (48%), Gaps = 40/282 (14%)

Query: 160 VSALNACAQLLDLRR-------GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           V+ L A + L DL R        +  HG ++   + G  F+ N L   YA+ G + +AR 
Sbjct: 14  VAHLRASSPLADLLRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARR 73

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  RN  S+N ++S Y + G+P +   LF+ +     +PD+ + + ++ A  + GR
Sbjct: 74  VFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIP----DPDQCSYNAVVAALARHGR 129

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
                                        G   DAL     M ++D   + +S +S +S+
Sbjct: 130 -----------------------------GHAGDALRFLAAMHADDFVLNAYSFASALSA 160

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA    L  G+ VHG        DD+ + +AL+DMY KC    DA  VF+ MP RNVVSW
Sbjct: 161 CAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSW 220

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           NS+I  Y QNG   EAL L+ +++     PD  T  SV+SAC
Sbjct: 221 NSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC 262



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 38/222 (17%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           SL   +  HG  +   V  +  + + L+  Y + G   +A  VF+ +P RN  S+N++++
Sbjct: 32  SLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLS 91

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            YA+ G+  EA AL++ +      PD  ++ +V++A     L   G+ H           
Sbjct: 92  AYARLGRPDEARALFEAIPD----PDQCSYNAVVAA-----LARHGRGHAGD-------- 134

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
            +L   A M            A D +       N+  +++ LS CA + D++ GE     
Sbjct: 135 -ALRFLAAM-----------HADDFVL------NAYSFASALSACAAEKDLRTGEQ-VHG 175

Query: 518 LFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKNV 557
           L    P     +I   L +MYA C R  D   +  +M  +NV
Sbjct: 176 LVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/626 (35%), Positives = 342/626 (54%), Gaps = 59/626 (9%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS---ALNACAQLLDLRRGKQIHGKIVV 184
           I   A +G   +A+ +F RM+     P      S   AL +CA L     G  +H   + 
Sbjct: 20  IRAAAAEGHFCDAVSLFLRMRASA-APRSSVPASLPAALKSCAALGLSALGASLHALAIR 78

Query: 185 GNLGGNVFVRNALTDMYAK-------------------GGEIDKARWLFDRMNNRNLVSW 225
                + F  NAL ++Y K                       +  R +FD M  R++VSW
Sbjct: 79  SGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSW 138

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GACFQ 269
           N ++ G  + G+  + +   ++M   G  PD  T+S +L                G  F+
Sbjct: 139 NTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFR 198

Query: 270 TG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
            G                   R D + ++F  +  +D++ W +++ G  QNG  E+AL +
Sbjct: 199 NGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGI 258

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  ML   VRP   + SS++  C  LASL  G+ +H   +  G +D++ +SS+LIDMYCK
Sbjct: 259 FRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCK 318

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG    A  +F+ M + +VVSW +MI GYA +G   EAL L++++   N KP+  TF++V
Sbjct: 319 CGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAV 378

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L+AC HA L ++G  +F S+S  +GI P+L+H+A + + LGR+ ++D+A + I  +  KP
Sbjct: 379 LTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKP 438

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            + +WSTLL  C +  +    E  A+ + ELEP + G +++LSNMY+A GRW + A +R 
Sbjct: 439 TASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRE 498

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
           SM+ K +KK  A SWIE+ +K+H FV+ DR+HP  + I + L+   +++   G  PNT+ 
Sbjct: 499 SMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTED 558

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           V  D +EE K   +C HSEKLA+ + +I  P G T IR+MKN+RVC DCH   KF S + 
Sbjct: 559 VFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAG-TKIRVMKNLRVCIDCHTVTKFISKLA 617

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
            R I++RD+NRFHHF  GNCSC D W
Sbjct: 618 DREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 136/286 (47%), Gaps = 17/286 (5%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           A   +R+  D +  R   +    +  LVL C        A      M    + P++ F  
Sbjct: 119 AFESVRKVFDEMIERDVVS----WNTLVLGCAEEGRHHEALGFVRKMCREGFRPDS-FTL 173

Query: 63  NRLLHFYAKSGKL--------FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           + +L  +A+   +        F  R+ FD     D+   ++L+  +A          +FD
Sbjct: 174 STVLPIFAECADVKRGLEVHGFAFRNGFDS----DVFVGSSLIDMYANCTRTDYSVKVFD 229

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
            +P+RD + +N+ +AG A  G   EAL +F RM +    P   T  S +  C  L  LR 
Sbjct: 230 NLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRF 289

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GKQ+H  ++ G    NVF+ ++L DMY K GEI  A  +FD+M++ ++VSW  MI GY  
Sbjct: 290 GKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYAL 349

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           +G  ++ + LF+ M+L    P+ +T   +L AC   G +D   + F
Sbjct: 350 HGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYF 395



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 40/391 (10%)

Query: 80  DLFDKMPLRDIISWN-ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           +L+ K+P   + S   A++     S + + +R +FD+M  RD VS+NT + G A +G   
Sbjct: 93  NLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHH 152

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           EAL    +M ++ F P  +T  + L   A+  D++RG ++HG         +VFV ++L 
Sbjct: 153 EALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLI 212

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           DMYA     D +  +FD +  R+ + WN +++G  +NG  ++ + +F+ M   G+ P  V
Sbjct: 213 DMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPV 272

Query: 259 TVSNILGAC-----------------------------------FQTGRIDDAGRLFHVI 283
           T S+++  C                                    + G I  A  +F  +
Sbjct: 273 TFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKM 332

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG- 342
              D V WT MI+GY  +G   +AL+LF  M   + +P+  +  +V+++C+    +  G 
Sbjct: 333 SSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGW 392

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQ 401
           +     +   G+   L   +AL D   + G  D+A+   + M  +   S W++++     
Sbjct: 393 KYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRV 452

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
           +   + A  +  K+++  L+P S     VLS
Sbjct: 453 HKNTMLAEEVAKKIME--LEPRSIGSHVVLS 481



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 127/290 (43%), Gaps = 48/290 (16%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF--SISSVVSSCAKLASLYHGQVVHGK 348
           W   I      G   DA+ LF  M +          S+ + + SCA L     G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 349 AVVLGVDDDLLVSSALIDMYCK--CGVTDDAWT-----------------VFNMMPTRNV 389
           A+  G   D   ++AL+++YCK  C   D                     VF+ M  R+V
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG------ 443
           VSWN+++ G A+ G+  EAL    K+ +E  +PDSFT  +VL         +RG      
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 444 --QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
             +N FDS   V          + +I++    +  D +V +  +LP + + ++W++LL+ 
Sbjct: 196 AFRNGFDSDVFVG---------SSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAG 245

Query: 502 CAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIR 549
           CA  G ++      R + +  + P+     +  S++   CG   ++AS+R
Sbjct: 246 CAQNGSVEEALGIFRRMLQAGVRPVP----VTFSSLIPVCG---NLASLR 288



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/271 (23%), Positives = 117/271 (43%), Gaps = 51/271 (18%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ L+  C  +  +   K+L +++    +E N  F+ + L+  Y K G++  A  +FDKM
Sbjct: 274 FSSLIPVCGNLASLRFGKQLHAYVICGGFEDNV-FISSSLIDMYCKCGEISIAHCIFDKM 332

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
              D++SW A++  +A  G                                +REAL +F 
Sbjct: 333 SSPDVVSWTAMIMGYALHGP-------------------------------AREALVLFE 361

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN---ALTDMYA 202
           RM+    +P   T ++ L AC+    + +G +    +   N  G V       AL D   
Sbjct: 362 RMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSM--SNHYGIVPTLEHFAALADTLG 419

Query: 203 KGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEM--QLLGLNP---- 255
           + GE+D+A     +M  +   S W+ +    L+  +  K   L +E+  +++ L P    
Sbjct: 420 RAGELDEAYNFISKMQIKPTASVWSTL----LRACRVHKNTMLAEEVAKKIMELEPRSIG 475

Query: 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
             V +SN+  A   +GR ++A  L   +++K
Sbjct: 476 SHVVLSNMYSA---SGRWNEAAHLRESMRKK 503


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/645 (35%), Positives = 362/645 (56%), Gaps = 40/645 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+   AR+G +   R +F+ +  R  V +   I  +   G + +A+++F  M 
Sbjct: 182 DVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGML 241

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---GG 205
           +D FEP  YT  S ++ACA+      G+Q+H  ++   L  +  V   L DMY K     
Sbjct: 242 EDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQ 301

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++ AR +F RM   N++SW  +ISGY++  GQ    ++L  EM    + P+ +T S++L
Sbjct: 302 SMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLL 361

Query: 265 GACFQTGRIDDAGRLFHVIKEKD-----NVCWTTMIVGYTQNGKEEDALILFNEML---- 315
            AC       D+GR  H    K      NV    ++  Y ++G  E+A   F+++     
Sbjct: 362 KACANLSD-QDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNL 420

Query: 316 ----------------------SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
                                 S DV    F+ +S++S+ A +     GQ +H  ++  G
Sbjct: 421 LSTSSDIGETGRSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTG 480

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALY 412
            + D  +S++L+ MY +CG  DDA   F+ M    NV+SW S+I+  A++G    AL+L+
Sbjct: 481 FESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLF 540

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
             ++   +KP+  T+++VLSAC H  L + G+ +F S+   H + P ++HYACM++LL R
Sbjct: 541 HDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLAR 600

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S  V +A++ I  +P K ++L+W TLL  C    +I+ GE+AARH+ +LEP +  PY++L
Sbjct: 601 SGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLL 660

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YA  G W++VA IRS M+ +N+ K    SW+ + N +H+F + D +HP  + IY +L
Sbjct: 661 SNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKL 720

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK-PHGVTPIRIMK 651
           + LI+++++ G+ P+T +VLHD  ++ K + +  HSEK+A+A+ LI   P    PIRI K
Sbjct: 721 AVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLP--TKPIRIFK 778

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH  +K+ S   GR IILRDSNRFH    G CSC + W
Sbjct: 779 NLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 219/497 (44%), Gaps = 82/497 (16%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            + N LL  Y+K G +  AR +FD M  LRD++SW A+     R+G+ Q           
Sbjct: 80  LVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQ----------- 128

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQLLDLRRGK 176
                               EAL +   M +    P  +T  +A +AC   +L     G 
Sbjct: 129 --------------------EALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGT 168

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            +   I  G  G +V V  AL DM+A+ G++  AR +F+ +  R +V W LMI+ Y++ G
Sbjct: 169 VLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGG 228

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG------------------------- 271
              K ++LF  M   G  PD  T+S+++ AC + G                         
Sbjct: 229 CAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSC 288

Query: 272 -------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-NGKEEDALILFNEMLSE 317
                         ++ A ++F  +   + + WT +I GY Q  G+E +A+ L  EML+E
Sbjct: 289 GLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNE 348

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + P+  + SS++ +CA L+    G+ +H + +   + +  +V +AL+ MY + G  ++A
Sbjct: 349 SIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEA 408

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              F+ +  RN++S +S I    ++     +     ++   ++   +FTF S+LSA    
Sbjct: 409 RKAFDQLYERNLLSTSSDIGETGRSNASWSS-----QIESMDVGVSTFTFASLLSAAATV 463

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L  +GQ    ++S   G          ++++  R   +D A      +    N + W++
Sbjct: 464 GLPTKGQ-QLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTS 522

Query: 498 LLSVCAMKGDIKHGEMA 514
           ++S  A  G   H E A
Sbjct: 523 IISALAKHG---HAERA 536



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           + N L+  Y++ G L  A   FD+M    ++ISW +++SA A+ G  +   +LF  M + 
Sbjct: 487 ISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILS 546

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEP 154
               + V+Y   ++  ++ G  +E  + F  MQKD R  P
Sbjct: 547 GVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIP 586


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/595 (37%), Positives = 340/595 (57%), Gaps = 37/595 (6%)

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
           S+  L V   +     EP    + + L  C QL  L+ GK +H  ++  N   ++ ++N+
Sbjct: 55  SKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNS 114

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L  MYA+ G ++ AR LFD M +R++VSW  MI+GY +N +    + LF  M   G  P+
Sbjct: 115 LLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174

Query: 257 EVTVSNILGAC-----FQTGR------------------------------IDDAGRLFH 281
           E T+S+++  C     +  GR                              + +A  +F 
Sbjct: 175 EFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFD 234

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            +  K+ V W  +I GY + G+ E+AL LF  M  E  RP +F+ S+++SSC+ +  L  
Sbjct: 235 KLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQ 294

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +H   +         V + L+ MY K G   DA  VF+ +   +VVS NSM+ GYAQ
Sbjct: 295 GKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQ 354

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G   EA   +D++++  ++P+  TF+SVL+AC HA L + G+++F  +   + I P + 
Sbjct: 355 HGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYF-GLMRKYNIEPKVS 413

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           HYA +++LLGR+  +D+A   I+ +P +P   IW  LL    M  + + G  AA+ +FEL
Sbjct: 414 HYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFEL 473

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           +P   G + +L+N+YA+ GRWEDVA +R  MK   VKK  A SW+E++N VH FV+ D  
Sbjct: 474 DPSYPGTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVA 533

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKP 641
           HP+ E I++   KL +K++E G+ P+T  VL    ++EK  ++ YHSEKLAL++ L+  P
Sbjct: 534 HPQKEKIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTP 593

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G T IRIMKNIRVCGDCH  +K+ S ++ R II+RD+NRFHHF  G CSC D W
Sbjct: 594 PGST-IRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 190/390 (48%), Gaps = 41/390 (10%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR----DLFDKMPLRDIISWNALLSAHARSG 104
           +D    EP+ T L+N LL    + GKL   +     + +     D++  N+LL  +AR G
Sbjct: 65  IDCGSLEPDRT-LYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCG 123

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           S++  R LFD+MP RD VS+ + I G+A    + +AL +F RM  D  EP ++T  S + 
Sbjct: 124 SLEGARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVK 183

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
            C  +     G+QIH          NVFV ++L DMYA+ G + +A  +FD++  +N VS
Sbjct: 184 CCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVS 243

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------- 267
           WN +I+GY + G+ ++ + LF  MQ  G  P E T S +L +C                 
Sbjct: 244 WNALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLM 303

Query: 268 ------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                              ++G I DA ++F  + + D V   +M++GY Q+G  ++A  
Sbjct: 304 KSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQ 363

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            F+EM+   + P+  +  SV+++C+    L  G+   G      ++  +   + ++D+  
Sbjct: 364 QFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLG 423

Query: 370 KCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           + G+ D A +    MP    V+ W +++  
Sbjct: 424 RAGLLDQAKSFIEEMPIEPTVAIWGALLGA 453



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 122/272 (44%), Gaps = 15/272 (5%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA-----KSGKLFY 77
           E ++  L+    R  + E A  L   M    Y P T F ++ LL   +     + GK  +
Sbjct: 241 EVSWNALIAGYARKGEGEEALALFVRMQREGYRP-TEFTYSALLSSCSSMGCLEQGKWLH 299

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +     L   +  N LL  +A+SGS++D   +FDK+   D VS N+ + G+A  G  
Sbjct: 300 AHLMKSSQKLVGYVG-NTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLG 358

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           +EA Q F  M +   EP D T +S L AC+    L  GK   G +   N+   V     +
Sbjct: 359 KEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATI 418

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMI--SGYLKNGQPKKCIDLFQEMQLLGLN 254
            D+  + G +D+A+   + M     V+ W  ++  S   KN +    +  +   ++  L+
Sbjct: 419 VDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTE----MGAYAAQRVFELD 474

Query: 255 PDEVTVSNILGACFQT-GRIDDAGRLFHVIKE 285
           P       +L   + + GR +D  ++  ++K+
Sbjct: 475 PSYPGTHTLLANIYASAGRWEDVAKVRKIMKD 506


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/628 (37%), Positives = 359/628 (57%), Gaps = 30/628 (4%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L A  R  ++Q   +LFD +     VS+N  I  +     S +A+ +F ++  D F P  
Sbjct: 56  LYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIENQRSNDAIALFCKLLCD-FVPDS 114

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +T    L  CA+L  L+ GKQIHG ++    G + FV ++L  MY+K GEI+  R +FDR
Sbjct: 115 FTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDR 174

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ----------LLGLNP----------- 255
           M ++++VSWN +I GY + G+ +  +++F+EM           + GL+            
Sbjct: 175 MEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVF 234

Query: 256 DEVTVSN------ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           D + + N      ++    + G  + A  LF  + E+  V W +MI GY +N +   AL 
Sbjct: 235 DRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALK 294

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF  ML ED+ P+  +I   VS+ + + SL  G+ VH   V  G   D ++ + LI+MY 
Sbjct: 295 LFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYS 354

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KCG    A  VF  +P + +  W S+I G   +G   + L L+D++ +  LKP + TF+ 
Sbjct: 355 KCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIG 414

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           VL+AC HA   E    +F  ++  +GI PS++HY C+I++L R+  +++A D I+ +P K
Sbjct: 415 VLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIK 474

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
            N +IW++LLS     G+I+ GE AA+HL +L P   G Y++LSNMYAA G WE V  +R
Sbjct: 475 ANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVR 534

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
             MK K +KK    S IE    +H+F+  D++HP+TE IY +L ++ KKL  AG  P+T 
Sbjct: 535 EMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTT 594

Query: 610 LVLHDTQEE-EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
            VL   +E+ EK   +  HSE+LA+A+ L+   HG +PIRI+KN+R+C DCH   K  S 
Sbjct: 595 QVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHG-SPIRIIKNLRICNDCHAVTKLLSH 653

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I  R II+RD +RFHHF  G+CSCKD W
Sbjct: 654 IYNREIIIRDGSRFHHFKSGSCSCKDFW 681


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/577 (38%), Positives = 334/577 (57%), Gaps = 39/577 (6%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ-LLDLRRGKQIHG 180
           V++N  I+G    G   E+   F  M +    PT  T+VS L+AC +   D+  G Q+HG
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           ++V   +  ++ V NAL DMYA+  ++  A  +FD M  R++VSW  ++SG  + GQ   
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQ--- 204

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                           +D+A  LF  + E+D V WT MI GY  
Sbjct: 205 --------------------------------VDEARDLFDRMPERDTVSWTAMIDGYVW 232

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
             +  +AL +F EM   +V  D+F++ SV+++CA+L +L  G+ V       G+  D  V
Sbjct: 233 AARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFV 292

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +ALIDMY KCG  + A  VF  M  R+  +W ++I G A NG + EA+ ++ ++++ + 
Sbjct: 293 GNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSE 352

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            PD  TF+ VL+AC HA L ++G+  F S+   + I P++ HY C+I+LLGR+  + +A+
Sbjct: 353 TPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEAL 412

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           D I  +P  PNS IW TLL+ C + G+ + GE+ A  L EL+P N+  YI+LSN+YA C 
Sbjct: 413 DTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCN 472

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RWEDV  +R ++  K +KK    S IE+D  +H+FV+ D++HP ++ IY +L  +I  L 
Sbjct: 473 RWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLN 532

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI-KKPHGVTPIRIMKNIRVCGDC 659
             G+ P+   V  +  E+EK K + +HSEKLA+A+ L+  KP+  T IRI+KN+R+C DC
Sbjct: 533 NVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPN--TVIRIVKNLRMCLDC 590

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +K  S + GR +++RD  RFHHF  G CSCKD W
Sbjct: 591 HNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 109/365 (29%), Positives = 183/365 (50%), Gaps = 11/365 (3%)

Query: 18  GQAATEEAYTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A T   Y  ++  C +   DV L  ++   +  +   P+   + N L+  YA+   + 
Sbjct: 117 GAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLR-VENALVDMYAECADMG 175

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A  +FD M +R ++SW +LLS  AR G V + R LFD+MP RD+VS+   I G+     
Sbjct: 176 SAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAAR 235

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
            REAL++F  MQ       ++T VS + ACAQL  L  G+ +   +    +  + FV NA
Sbjct: 236 FREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNA 295

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY+K G I++A  +F  M++R+  +W  +I G   NG  ++ I++F  M  +   PD
Sbjct: 296 LIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPD 355

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILF 311
           EVT   +L AC   G +D     F  + E  N+      +  +I    + GK  +AL   
Sbjct: 356 EVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTI 415

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           ++M    + P+     +++++C    +   G++V  + + L  ++  +V   L ++Y KC
Sbjct: 416 DQM---PMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENS-MVYILLSNIYAKC 471

Query: 372 GVTDD 376
              +D
Sbjct: 472 NRWED 476



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 171/411 (41%), Gaps = 131/411 (31%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           ++WNAL+S H R G                                  E+   F  M + 
Sbjct: 88  VAWNALISGHNRGGRFG-------------------------------ESCGSFVDMARA 116

Query: 151 RFEPTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY-------- 201
              PT  T+VS L+AC +   D+  G Q+HG++V   +  ++ V NAL DMY        
Sbjct: 117 GAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGS 176

Query: 202 -----------------------AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
                                  A+ G++D+AR LFDRM  R+ VSW  MI GY+   + 
Sbjct: 177 AWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARF 236

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
           ++ +++F+EMQ   ++ DE T+ +++ AC Q                             
Sbjct: 237 REALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNAL 296

Query: 270 ------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  G I+ A  +F  +  +D   WT +I+G   NG EE+A+ +F+ M+     PD+
Sbjct: 297 IDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDE 356

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            +   V+++C      + G V  G+   L          ++I+ Y             N+
Sbjct: 357 VTFIGVLTACT-----HAGLVDKGREFFL----------SMIEAY-------------NI 388

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            P  NVV +  +I+   + G+  EAL   D + Q  + P+S  + ++L+AC
Sbjct: 389 AP--NVVHYGCIIDLLGRAGKITEAL---DTIDQMPMTPNSTIWGTLLAAC 434



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 16/260 (6%)

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLA----SLYHGQVVHGKAVVLGVDDDLLV 360
           EDA+  +  ML+   RPD ++  +++ + A+ A    S    + VH   V LG+  +  V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +S+L+  Y   G    A  +     T   V+WN++I+G+ + G+  E+   +  + +   
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 421 KPDSFTFVSVLSACLHA--DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            P   T+VSVLSAC     D+    Q H   + +  G+ P L     ++++    +D+  
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS--GVLPDLRVENALVDMYAECADMGS 176

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIMLSNMYA 537
           A  +   +  + + + W++LLS  A  G +      AR LF+  P  +   +  + + Y 
Sbjct: 177 AWKVFDGMQVR-SVVSWTSLLSGLARLGQVDE----ARDLFDRMPERDTVSWTAMIDGYV 231

Query: 538 ACGRWEDVASIRSSMKSKNV 557
              R+ +   +   M+  NV
Sbjct: 232 WAARFREALEMFREMQYSNV 251


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 336/569 (59%), Gaps = 36/569 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  CA+   +   K  HGKI+  +L G+V + N L + Y+K G ++ AR +FD M  R+L
Sbjct: 68  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSWN MI  Y +N    + +D+F EM+  G    E T+S++L AC               
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 187

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G I DA ++F  +++K +V W++M+ GY QN   E+A
Sbjct: 188 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 247

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L+L+       +  ++F++SSV+ +C+ LA+L  G+ +H      G   ++ V+S+ +DM
Sbjct: 248 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDM 307

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG   +++ +F+ +  +N+  WN++I+G+A++ +  E + L++K+ Q+ + P+  TF
Sbjct: 308 YAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTF 367

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            S+LS C H  L E G+  F  +   +G++P++ HY+CM+++LGR+  + +A +LIKS+P
Sbjct: 368 SSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIP 427

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
             P + IW +LL+ C +  +++  E+AA  LFELEP NAG +++LSN+YAA  +WE++A 
Sbjct: 428 FDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAK 487

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            R  ++  +VKK    SWI+I +KVH F   +  HP    I   L  L+ K ++ G+ P+
Sbjct: 488 SRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPS 547

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            +  LHD +  +K + +  HSEKLAL + L+  P   +P+RIMKN+R+C DCH FMK AS
Sbjct: 548 VEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPES-SPVRIMKNLRICVDCHEFMKAAS 606

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               R II+RD NRFHHF  G+CSC D W
Sbjct: 607 MATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/191 (35%), Positives = 114/191 (59%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            ALL  +A+ G ++D   +F+ M  + SV++++ +AG+       EAL ++ R Q+   E
Sbjct: 201 TALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLE 260

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
              +T  S + AC+ L  L  GKQ+H  I     G NVFV ++  DMYAK G + ++  +
Sbjct: 261 QNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYII 320

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  +  +NL  WN +ISG+ K+ +PK+ + LF++MQ  G++P+EVT S++L  C  TG +
Sbjct: 321 FSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLV 380

Query: 274 DDAGRLFHVIK 284
           ++  R F +++
Sbjct: 381 EEGRRFFKLMR 391



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 188/382 (49%), Gaps = 44/382 (11%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR-----DIISWNALLSAHARSGSVQDLRA 111
           N   +H  +L   A++G +  A+    K+ +R     D+   N L++A+++ G V+  R 
Sbjct: 60  NRNLVH-EILQLCARNGAVMEAKACHGKI-IRIDLEGDVTLLNVLINAYSKCGFVELARQ 117

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FD M  R  VS+NT I  +       EAL +F  M+ + F+ +++T  S L+AC    D
Sbjct: 118 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 177

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
               K++H   V   +  N++V  AL D+YAK G I  A  +F+ M +++ V+W+ M++G
Sbjct: 178 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 237

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
           Y++N   ++ + L++  Q + L  ++ T+S+++ AC                        
Sbjct: 238 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 297

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       + G + ++  +F  ++EK+   W T+I G+ ++ + ++ +ILF +M  
Sbjct: 298 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 357

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           + + P++ + SS++S C     +  G +         G+  +++  S ++D+  + G+  
Sbjct: 358 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS 417

Query: 376 DAWTVFNMMPTRNVVS-WNSMI 396
           +A+ +   +P     S W S++
Sbjct: 418 EAYELIKSIPFDPTASIWGSLL 439



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 107/359 (29%), Positives = 175/359 (48%), Gaps = 48/359 (13%)

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG---QPKKCIDLFQEMQLLGLNPDEVTVSN 262
           E+   R+  +  +NRNLV   L +    +NG   + K C      + L G    +VT+ N
Sbjct: 48  EVSPGRY-SNEFSNRNLVHEILQLCA--RNGAVMEAKACHGKIIRIDLEG----DVTLLN 100

Query: 263 IL-GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           +L  A  + G ++ A ++F  + E+  V W TMI  YT+N  E +AL +F EM +E  + 
Sbjct: 101 VLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKF 160

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
            +F+ISSV+S+C         + +H  +V   +D +L V +AL+D+Y KCG+  DA  VF
Sbjct: 161 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 220

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
             M  ++ V+W+SM+ GY QN    EAL LY +  + +L+ + FT  SV+ AC       
Sbjct: 221 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 280

Query: 435 ----LHADLFER--GQNHFDSISAVHGIT-----------------PSLDHYACMINLLG 471
               +HA + +   G N F + SAV                      +L+ +  +I+   
Sbjct: 281 EGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFA 340

Query: 472 RSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           + +   + + L + +      PN + +S+LLSVC   G ++ G    R  F+L     G
Sbjct: 341 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG----RRFFKLMRTTYG 395



 Score = 40.8 bits (94), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           N    RN+V  + ++   A+NG  +EA A + K+++ +L+ D      +++A       E
Sbjct: 56  NEFSNRNLV--HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVE 113

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTL 498
             +  FD +     +  SL  +  MI L  R+    +A+D+   +++   K +    S++
Sbjct: 114 LARQVFDGM-----LERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 168

Query: 499 LSVCAMKGDIKHGEMAARHLFELEP-INAGPYI--MLSNMYAACGRWEDVASIRSSMKSK 555
           LS C +  D    E    H   ++  I+   Y+   L ++YA CG  +D   +  SM+ K
Sbjct: 169 LSACGVNCDAL--ECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK 226

Query: 556 NVKKFAAYSWIEIDNK 571
           +   +++     + NK
Sbjct: 227 SSVTWSSMVAGYVQNK 242


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 328/578 (56%), Gaps = 37/578 (6%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT   + S + ACAQ  +L   + IH  +    L G+ F+ N+L  MY K G +  AR +
Sbjct: 60  PTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHV 119

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL---GACFQT 270
           FD +  R++VSW  +I+GY +N  P + + L  +M      P   T ++ L   GAC   
Sbjct: 120 FDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGR 179

Query: 271 G--------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVGY 298
           G                                ++D A R+F  +  K+ V W  +I G+
Sbjct: 180 GIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGF 239

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            + G  E  L+ F EM         F+ SSV S+ A++ +L  G+ VH   +  G     
Sbjct: 240 ARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTA 299

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++ ++ MY K G   DA  VF+ +  R++V+WN+M+  +AQ G   EA+A ++++ + 
Sbjct: 300 FVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKY 359

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++ +  TF+SVL+AC H  L + G+ +FD +   + + P +DHY   ++LLGR+  + +
Sbjct: 360 GIQLNQITFLSVLTACSHGGLVKEGKQYFDMMKD-YNVEPEIDHYVSFVDLLGRAGLLKE 418

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+  +  +P +P + +W  LL  C M  + K G+ AA H+FEL+P + GP ++L N+YA+
Sbjct: 419 ALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYAS 478

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W+D A +R  MK+  VKK  A SW+EI+N VH FV++D THP++E IY    ++  +
Sbjct: 479 TGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTR 538

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++AG+ PNT  VL   +E+E+   + YHSEK+ALA+ LI  P G T IRIMKNIR+CGD
Sbjct: 539 IKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGAT-IRIMKNIRICGD 597

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   ++ S++  R I++RD+NRFHHF  G+CSC D W
Sbjct: 598 CHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 182/424 (42%), Gaps = 68/424 (16%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D L +   A T   Y  ++  C +  ++  A+ + SH+  +    +  FL N L+H Y 
Sbjct: 50  LDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDG-FLLNSLIHMYC 108

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G                               +V D R +FD +P RD VS+   I G
Sbjct: 109 KCG-------------------------------AVSDARHVFDGIPTRDVVSWTYLITG 137

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A      EAL +   M + RF P+ +T  S L A         G+Q+H   V  NL  +
Sbjct: 138 YAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDED 197

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V+V +AL DMYA+  ++D A  +FD ++++N VSWN +I+G+ + G  +  +  F EMQ 
Sbjct: 198 VYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQR 257

Query: 251 LGLNPDEVTVSN-----------------------------------ILGACFQTGRIDD 275
            G      T S+                                   ILG   ++G + D
Sbjct: 258 NGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVD 317

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  + ++D V W TM+  + Q G  ++A+  F E+    ++ ++ +  SV+++C+ 
Sbjct: 318 ARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSH 377

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVVSWNS 394
              +  G+          V+ ++    + +D+  + G+  +A   VF M        W +
Sbjct: 378 GGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGA 437

Query: 395 MING 398
           ++  
Sbjct: 438 LLGA 441



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 150/305 (49%), Gaps = 8/305 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR   +     +FD +  ++ VS+N  IAGFA KG     L  F+ MQ
Sbjct: 197 DVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQ 256

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F  T +T+ S  +A A++  L +G+ +H  ++        FV N +  MYAK G + 
Sbjct: 257 RNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMV 316

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDR++ R+LV+WN M++ + + G  K+ +  F+E++  G+  +++T  ++L AC 
Sbjct: 317 DARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACS 376

Query: 269 QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +  + F ++K    E +   + + +    + G  ++ALI   +M  E   P   
Sbjct: 377 HGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPME---PTAA 433

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++ +C    +   GQ        L   +D      L ++Y   G  DDA  V  MM
Sbjct: 434 VWGALLGACRMHKNAKIGQYAADHVFELD-PEDTGPPVLLYNIYASTGQWDDAARVRKMM 492

Query: 385 PTRNV 389
               V
Sbjct: 493 KATGV 497



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 20/252 (7%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           +L+ ++ P      S++++CA+  +L   + +H       +  D  + ++LI MYCKCG 
Sbjct: 53  LLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGA 112

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-- 431
             DA  VF+ +PTR+VVSW  +I GYAQN    EAL L   +L+   +P  FTF S L  
Sbjct: 113 VSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKA 172

Query: 432 -SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
             AC    + E  Q H  +++  + +   +   + ++++  R   +D A+ +   L  K 
Sbjct: 173 AGACGGRGIGE--QMH--ALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSK- 227

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC--------GR 541
           N + W+ L++  A KGD   GE       E++    G  +   S++++A         GR
Sbjct: 228 NEVSWNALIAGFARKGD---GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGR 284

Query: 542 WEDVASIRSSMK 553
           W     I+S  K
Sbjct: 285 WVHAHMIKSGQK 296


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/658 (34%), Positives = 360/658 (54%), Gaps = 73/658 (11%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F+ +   + + +NT + G A+      AL+++ RM      P  Y+    L +CA+  
Sbjct: 19  SVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAKSK 78

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID---------------------- 208
               G+QIH +++    G + +V  +L  MYA+ G ++                      
Sbjct: 79  AFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTALIT 138

Query: 209 ---------KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                     AR +FD +  R++VSWN MI+GY++NG+ ++ ++LF+EM    + PDE T
Sbjct: 139 GYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDEGT 198

Query: 260 VSNILGACFQTGRID---------------------------------------DAGRLF 280
           + +++ AC Q+G I+                                        A  LF
Sbjct: 199 LVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLF 258

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  KD V W T+I GYT     ++AL+LF EML     P+  ++ SV+ +CA L ++ 
Sbjct: 259 EGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAID 318

Query: 341 HGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
            G+ +H      + GV ++  + ++LIDMY KCG  + A  VFN M  R++ SWN+MI G
Sbjct: 319 IGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFG 378

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           +A +G+   A  L+ ++    ++PD  TFV +LSAC H+ L + G+  F S++  + +TP
Sbjct: 379 FAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTP 438

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            L+HY CMI+LLG S    +A ++I ++P +P+ +IW +LL  C   G+++  E  A+ L
Sbjct: 439 KLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKL 498

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            ++EP N+G Y++LSN+YA  GRWEDVA +R  +  K +KK    S IE+D+ VH+F+  
Sbjct: 499 IKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIG 558

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D+ HP    IY  L ++  +L+EAGF+P+T  VL + +EE K  ++ +HSEKLA+A+ LI
Sbjct: 559 DKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLI 618

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               G T + I+KN+RVC +CH   K  S I  R I+ RD  RFHHF  G CSC D W
Sbjct: 619 STKPG-TKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/455 (26%), Positives = 210/455 (46%), Gaps = 48/455 (10%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G      ++  L+  C +    E  +++ + + L        ++H  L+  YA++G
Sbjct: 55  MVSLGHLPNSYSFPFLLKSCAKSKAFEEGRQIHAQV-LKLGCGLDRYVHTSLISMYARNG 113

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            L  AR +FD    RD++S  AL++ +A  G  +  R +FD++  RD VS+N  I G+  
Sbjct: 114 GLEDARKVFDASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVE 173

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG----NLGG 189
            G   EAL++F  M +    P + T VS ++ACAQ   +  G+Q+H  +           
Sbjct: 174 NGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSS 233

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           ++ + NAL D+Y+K G+++ A  LF+ ++ +++VSWN +I GY      K+ + LFQEM 
Sbjct: 234 SLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEML 293

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD------------------NVC- 290
             G  P++VT+ ++L AC   G I D GR  HV  +K                     C 
Sbjct: 294 RSGECPNDVTLLSVLPACAHLGAI-DIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCG 352

Query: 291 -------------------WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
                              W  MI G+  +G+   A  LF+ M    V PD  +   ++S
Sbjct: 353 DIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLS 412

Query: 332 SCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NV 389
           +C+    L  G Q+         +   L     +ID+    G+  +A  + + MP   + 
Sbjct: 413 ACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDG 472

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           V W S++    ++G    A +   KL++  ++P++
Sbjct: 473 VIWCSLLKACKKHGNLELAESFAQKLIK--IEPEN 505


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 327/573 (57%), Gaps = 38/573 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           + LN C +   +R G+++H  ++  +    V++R  L   Y K   +  AR +FD M  R
Sbjct: 63  TVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPER 122

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---------- 270
           N+VSW  MIS Y + G   + + LF +M   G  P+E T + +L +C  +          
Sbjct: 123 NVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIH 182

Query: 271 -------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                    G+I +A  +F  + E+D V  T +I GY Q G +E
Sbjct: 183 SHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDE 242

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL LF  +  E ++ +  + +SV+++ + LA+L HG+ VH   +   V   +++ ++LI
Sbjct: 243 EALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLI 302

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDS 424
           DMY KCG    A  +F+ +  R V+SWN+M+ GY+++G+  E L L++ ++ EN +KPDS
Sbjct: 303 DMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDS 362

Query: 425 FTFVSVLSACLHADLFERGQNHF-DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
            T ++VLS C H  L ++G + F D  S    + P   HY C++++LGR+  V+ A + +
Sbjct: 363 VTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFV 422

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           K +P +P++ IW  LL  C++  ++  GE     L ++EP NAG Y++LSN+YA+ GRWE
Sbjct: 423 KKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYASAGRWE 482

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV S+R+ M  K V K    SWIE+D  +H F + D +HP  E +  ++ +L  + +EAG
Sbjct: 483 DVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSARFKEAG 542

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P+   VLHD  EE+K K +  HSEKLAL + LI  P  V PIR++KN+R+C DCH F 
Sbjct: 543 YVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESV-PIRVIKNLRICVDCHNFA 601

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K+ S I GR + LRD NRFH  VGG CSC D W
Sbjct: 602 KYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 197/422 (46%), Gaps = 78/422 (18%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +LR+A+  +  RG     + Y  ++ +C R   +   +R+ +HM    Y P   +L  RL
Sbjct: 41  RLREALLHMALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLP-CVYLRTRL 99

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           + FY K                                 S++D R +FD MP R+ VS+ 
Sbjct: 100 IVFYVKCD-------------------------------SLRDARHVFDVMPERNVVSWT 128

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I+ ++ +G++ +AL +F +M +   EP ++T  + L +C        G+QIH  I+  
Sbjct: 129 AMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKL 188

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   +V+V ++L DMYAK G+I +AR +F  +  R++VS   +ISGY + G  ++ ++LF
Sbjct: 189 NYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELF 248

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           + +Q  G+  + VT +++L A                                     + 
Sbjct: 249 RRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKC 308

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSV 329
           G +  A R+F  + E+  + W  M+VGY+++G+  + L LFN M+ E+ V+PD  ++ +V
Sbjct: 309 GNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAV 368

Query: 330 VSSCA------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +S C+      K   +++  +  GK   + V  D      ++DM  + G  + A+     
Sbjct: 369 LSGCSHGGLEDKGMDIFY-DMTSGK---ISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKK 424

Query: 384 MP 385
           MP
Sbjct: 425 MP 426



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++LL  +A+ G + + R +F  +P RD VS    I+G+A  G   EAL++F R+Q++  +
Sbjct: 198 SSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQ 257

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T+ S L A + L  L  GKQ+H  ++   +   V ++N+L DMY+K G +  AR +
Sbjct: 258 SNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRI 317

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQTGR 272
           FD ++ R ++SWN M+ GY K+G+ ++ ++LF  M     + PD VTV  +L  C   G 
Sbjct: 318 FDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGL 377

Query: 273 IDDAGRLFH------VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            D    +F+      +  + D+  +  ++    + G+ E A     +M  E   P     
Sbjct: 378 EDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFE---PSAAIW 434

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
             ++ +C+  ++L  G+ V G  ++    ++      L ++Y   G  +D  ++ N+M  
Sbjct: 435 GCLLGACSVHSNLDIGEFV-GHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLK 493

Query: 387 RNV 389
           + V
Sbjct: 494 KAV 496


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/654 (33%), Positives = 359/654 (54%), Gaps = 44/654 (6%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N     N +   +A + KL +  +LF       +   N LL ++     +     LF+++
Sbjct: 152 NDAVPQNAVGQVHAFAVKLGFDTNLF-------LTVCNVLLKSYCEVRRLDLACVLFEEI 204

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
             +DSV++NT I G+   G   EA+ +F +M++   +P+D+T    L A   L D   G+
Sbjct: 205 LDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQ 264

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+HG  V      +  V N +   Y+K   + + R LF+ M   + VS+N++IS Y +  
Sbjct: 265 QLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAE 324

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILG-----ACFQTGR------------------- 272
           Q ++ ++LF+EMQ +G +      + +L      +  Q GR                   
Sbjct: 325 QYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADSILHVGN 384

Query: 273 -----------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                       D+A  +F  + ++  V WT +I GY Q G     L LF +M   ++R 
Sbjct: 385 SLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRA 444

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D+ + ++V+ + A  ASL  G+ +H   +  G  +++   S L+DMY KCG   DA  VF
Sbjct: 445 DQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVF 504

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             MP RN VSWN++I+ YA NG    A+  + K++Q  L+PDS + + VL AC H    E
Sbjct: 505 EEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVE 564

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           +G   F ++S ++GITP   HYACM++LLGR+    +A  L+  +P +P+ ++WS++L+ 
Sbjct: 565 QGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 624

Query: 502 CAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
           C +  +    E AA  LF +E + +A  Y+ +SN+YAA G+WE+V  ++ +M+ + +KK 
Sbjct: 625 CRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKV 684

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
            AYSW+E+++K+H F S D+THP  + I +++++L  +++  G+ P+T  V+ D  E+ K
Sbjct: 685 PAYSWVEVNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMK 744

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
           ++S+ YHSE+LA+A+ LI  P G  PI +MKN+R C DCH  +K  S I+ R I
Sbjct: 745 IESLKYHSERLAVAFALISTPEGC-PIVVMKNLRACRDCHAAIKLISKIVKRVI 797



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 135/482 (28%), Positives = 229/482 (47%), Gaps = 44/482 (9%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G++  A  ++D+MP ++ +S N ++S + + G +   R LFD MP R  V++   +  
Sbjct: 56  RRGQVSAALKVYDEMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGW 115

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A      EA ++F +M +    P   T  + L  C   +      Q+H   V      N
Sbjct: 116 YAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTN 175

Query: 191 VF--VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           +F  V N L   Y +   +D A  LF+ + +++ V++N +I+GY K+G   + I LF +M
Sbjct: 176 LFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKM 235

Query: 249 QLLGLNPDEVTVSNIL----------------GACFQTG-------------------RI 273
           +  G  P + T S +L                G    TG                   R+
Sbjct: 236 RQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRV 295

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            +   LF+ + E D V +  +I  Y+Q  + E++L LF EM         F  ++++S  
Sbjct: 296 LETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIA 355

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A L+SL  G+ VH +A+V   D  L V ++L+DMY KC + D+A  +F  +  R+ VSW 
Sbjct: 356 ANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWT 415

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQNHFDSISA 452
           ++I+GY Q G     L L+ K+   NL+ D  TF +VL A    A L    Q H   I +
Sbjct: 416 ALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRS 475

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
             G   ++   + ++++  +   +  AV + + +P + N++ W+ L+S  A  GD   GE
Sbjct: 476 --GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDR-NAVSWNALISAYADNGD---GE 529

Query: 513 MA 514
            A
Sbjct: 530 AA 531



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 168/401 (41%), Gaps = 74/401 (18%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +++  +I+      +    N   +   + G++  A  ++D M ++N VS N MISGY+K 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 236 G-----------QPKKCI--------------------DLFQEMQLLGLNPDEVTVSNIL 264
           G            P + +                     LF++M      PD VT + +L
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVTFTTLL 148

Query: 265 GAC--------------------FQTG-----------------RIDDAGRLFHVIKEKD 287
             C                    F T                  R+D A  LF  I +KD
Sbjct: 149 PGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKD 208

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           +V + T+I GY ++G   +A+ LF +M     +P  F+ S V+ +   L     GQ +HG
Sbjct: 209 SVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHG 268

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            +V  G   D  V + ++  Y K     +   +FN MP  + VS+N +I+ Y+Q  Q  E
Sbjct: 269 LSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEE 328

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYA-C 465
           +L L+ ++        +F F ++LS   +    + G Q H  +I A      S+ H    
Sbjct: 329 SLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVAT---ADSILHVGNS 385

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           ++++  +    D+A  + KSL  + +++ W+ L+S    KG
Sbjct: 386 LVDMYAKCEMFDEAELIFKSLSQR-STVSWTALISGYVQKG 425


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/638 (35%), Positives = 353/638 (55%), Gaps = 43/638 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL+ ++ +G  +D   +F  M  RD +S+N+ +A +   G   + L++ + + +    
Sbjct: 437  NTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKV 496

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T  SAL AC+    L   K +H  I+V      + V NAL  MY K G + +A+ +
Sbjct: 497  MNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKV 556

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
               M   + V+WN +I G+ +N +P + +  ++ ++  G+  + +T+ ++LGAC      
Sbjct: 557  LQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDL 616

Query: 268  ---------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                           F++               G ++ +  +F  +  K  + W  M+  
Sbjct: 617  LKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAA 676

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
               +G  E+AL +F EM +  V  D+FS S  +++ A LA L  GQ +HG  + LG + D
Sbjct: 677  NAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESD 736

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDK 414
            L V++A +DMY KCG   D   V  M+P    R+ +SWN +I+ +A++G   +A   + +
Sbjct: 737  LHVTNAAMDMYGKCGEMHD---VLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 793

Query: 415  LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            +L+   KPD  TFVS+LSAC H  L + G  ++DS++   G+ P ++H  C+I+LLGRS 
Sbjct: 794  MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSG 853

Query: 475  DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
             +  A   IK +P  PN L W +LL+ C + G+++     A HL EL+P +   Y++ SN
Sbjct: 854  RLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSN 913

Query: 535  MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
            + A  G+WEDV ++R  M S N+KK  A SW+++ +KVH F   ++ HP+   I  +L +
Sbjct: 914  VCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGE 973

Query: 595  LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
            L+K  +EAG+ P+T   LHD  EE+K  ++  HSE+LALA+ LI  P   T +RI KN+R
Sbjct: 974  LMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESST-LRIFKNLR 1032

Query: 655  VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
            VCGDCH   KF S I+GR I+LRD  RFHHF GG CSC
Sbjct: 1033 VCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 192/415 (46%), Gaps = 66/415 (15%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            ++   L+HFY   G ++ A+ LF++MP  +++SW +L+                     
Sbjct: 231 VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM--------------------- 269

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                      G+++ G   E L V+ RM+++       T  +  ++C  L D   G Q+
Sbjct: 270 ----------VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQV 319

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            G I+      +V V N+L  M++    +++A ++FD MN  +++SWN MIS Y  +G  
Sbjct: 320 LGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLC 379

Query: 239 KKCIDLFQEMQ-----------------------------------LLGLNPDEVTVSNI 263
           ++ +  F  M+                                    LGL+ +    + +
Sbjct: 380 RESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 439

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           L    + GR +DA  +F  + E+D + W +M+  Y Q+GK  D L +  E+L      + 
Sbjct: 440 LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNH 499

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            + +S +++C+    L   ++VH   +V G  D L+V +AL+ MY K G+  +A  V   
Sbjct: 500 VTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQT 559

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
           MP  + V+WN++I G+A+N +  EA+  Y  + ++ +  +  T VSVL AC   D
Sbjct: 560 MPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPD 614



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 135/511 (26%), Positives = 257/511 (50%), Gaps = 43/511 (8%)

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           +GK  +A  +   + L  I   N L++ +++ G+++  R +FD+M  R+  S++T ++G+
Sbjct: 112 AGKALHAFCIVGSVNL-GIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGY 170

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR-RGKQIHGKIVVGNLGGN 190
              G   EA+ +F +M     EP  +   S + AC++   +   G Q+HG +V   + G+
Sbjct: 171 VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGD 230

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-- 248
           V+V  AL   Y   G +  A+ LF+ M + N+VSW  ++ GY  +G P + ++++Q M  
Sbjct: 231 VYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQ 290

Query: 249 ----------------------QLLGLN----------PDEVTVSNILGACFQT-GRIDD 275
                                 Q+LG             D V+V+N L + F +   +++
Sbjct: 291 EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEE 350

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  +F  + E D + W  MI  Y  +G   ++L  F+ M       +  ++SS++S C+ 
Sbjct: 351 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSS 410

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           + +L  G+ +HG  V LG+D ++ + + L+ +Y + G ++DA  VF  M  R+++SWNSM
Sbjct: 411 VDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSM 470

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD-LFERGQNHFDSISAVH 454
           +  Y Q+G+ L+ L +  +LLQ     +  TF S L+AC + + L E    H  ++  V 
Sbjct: 471 MACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVH--ALIIVA 528

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G    L     ++ + G+   + +A  +++++P +P+ + W+ L+   A + +  +  + 
Sbjct: 529 GFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGGHA-ENEEPNEAVK 586

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           A  L   + I A  YI + ++  AC   +D+
Sbjct: 587 AYKLIREKGIPAN-YITMVSVLGACSAPDDL 616



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 130/564 (23%), Positives = 249/564 (44%), Gaps = 82/564 (14%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
            G +  +  +  +   C  + D  L  ++  H+    +E + + + N L+  ++    + 
Sbjct: 291 EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS-VANSLISMFSSFSSVE 349

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A  +FD M   DIISWNA++SA                               +A+ G 
Sbjct: 350 EACYVFDHMNECDIISWNAMISA-------------------------------YAHHGL 378

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
            RE+L+ F  M+    E    T  S L+ C+ + +L+ G+ IHG +V   L  NV + N 
Sbjct: 379 CRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNT 438

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L  +Y++ G  + A  +F  M  R+L+SWN M++ Y+++G+    + +  E+  +G   +
Sbjct: 439 LLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN 498

Query: 257 EVTVSNILGACF-----------------------------------QTGRIDDAGRLFH 281
            VT ++ L AC                                    + G + +A ++  
Sbjct: 499 HVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQ 558

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY- 340
            + + D V W  +I G+ +N +  +A+  +  +  + +  +  ++ SV+ +C+    L  
Sbjct: 559 TMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLK 618

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HG  +H   V+ G + D  V ++LI MY KCG  + +  +F+ +  ++ ++WN+M+   A
Sbjct: 619 HGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANA 678

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   EAL ++ ++    +  D F+F   L+A  +  + E GQ     +    G    L
Sbjct: 679 HHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQ-QLHGLVIKLGFESDL 737

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPN--SLIWSTLLSVCAMKGDIKHGEMAARHL 518
                 +++ G+  ++    D++K LP   N   L W+ L+S  A  G  +     AR  
Sbjct: 738 HVTNAAMDMYGKCGEMH---DVLKMLPQPINRSRLSWNILISAFARHGCFQ----KARET 790

Query: 519 FELEPINAGP---YIMLSNMYAAC 539
           F  E +  GP   ++   ++ +AC
Sbjct: 791 FH-EMLKLGPKPDHVTFVSLLSAC 813



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/426 (25%), Positives = 202/426 (47%), Gaps = 58/426 (13%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L   +++     GK +H   +VG++   +F  N L +MY+K G I+ AR++FD M +RN 
Sbjct: 101 LKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNE 160

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG----- 277
            SW+ M+SGY++ G  ++ + LF +M  LG+ P+   V++++ AC ++G + D G     
Sbjct: 161 ASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHG 220

Query: 278 -------------------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                          +LF  + + + V WT+++VGY+ +G   +
Sbjct: 221 FVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGE 280

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
            L ++  M  E V  ++ + ++V SSC  L     G  V G  +  G +D + V+++LI 
Sbjct: 281 VLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 340

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           M+      ++A  VF+ M   +++SWN+MI+ YA +G   E+L  +  +   + + +S T
Sbjct: 341 MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 400

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITP--SLDHYACMINLL-------GRSSDVD 477
             S+LS C   D  + G+        +HG+     LD   C+ N L       GRS D  
Sbjct: 401 LSSLLSVCSSVDNLKWGR-------GIHGLVVKLGLDSNVCICNTLLTLYSEAGRSED-- 451

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
              +L+     + + + W+++++     G    G      L ++  +    ++  ++  A
Sbjct: 452 --AELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMN--HVTFASALA 507

Query: 538 ACGRWE 543
           AC   E
Sbjct: 508 ACSNPE 513



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/422 (22%), Positives = 180/422 (42%), Gaps = 72/422 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y K G +  A+ +   MP  D ++WNAL+  HA            ++ P     
Sbjct: 538 NALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAE-----------NEEP----- 581

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLD-LRRGKQIHG 180
                           EA++ + ++ +++  P +Y T VS L AC+   D L+ G  IH 
Sbjct: 582 ---------------NEAVKAY-KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHA 625

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            IV+     + +V+N+L  MYAK G+++ + ++FD + N++ ++WN M++    +G  ++
Sbjct: 626 HIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEE 685

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA------------------------ 276
            + +F EM+ +G+N D+ + S  L A      +++                         
Sbjct: 686 ALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMD 745

Query: 277 -----GRLFHVIK------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                G +  V+K       +  + W  +I  + ++G  + A   F+EML    +PD  +
Sbjct: 746 MYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVT 805

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
             S++S+C     +  G   +       GV   +     +ID+  + G    A      M
Sbjct: 806 FVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM 865

Query: 385 PT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           P   N ++W S++     +G    A    + LL+ +   DS  +V   + C  +  +E  
Sbjct: 866 PVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS-AYVLYSNVCATSGKWEDV 924

Query: 444 QN 445
           +N
Sbjct: 925 EN 926



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 148/333 (44%), Gaps = 45/333 (13%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDV-ELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           +A   +  +G  A       ++  C+  +D+ +    + +H+ L  +E +  ++ N L+ 
Sbjct: 586 KAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDD-YVKNSLIT 644

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            YAK G L  +  +FD +  +  I+WNA+++A+A  G                       
Sbjct: 645 MYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGC---------------------- 682

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
                      EAL++F  M+        ++    L A A L  L  G+Q+HG ++    
Sbjct: 683 ---------GEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGF 733

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             ++ V NA  DMY K GE+     +  +  NR+ +SWN++IS + ++G  +K  + F E
Sbjct: 734 ESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHE 793

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQ 300
           M  LG  PD VT  ++L AC   G +D+         R F V    ++      ++G  +
Sbjct: 794 MLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLG--R 851

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           +G+   A     EM    V P+  +  S++++C
Sbjct: 852 SGRLSHAEGFIKEM---PVPPNDLAWRSLLAAC 881


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/563 (37%), Positives = 328/563 (58%), Gaps = 15/563 (2%)

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           +A+ ++  M      P  YT+ + L AC+    +  G Q+H  +V   LGG+  + ++  
Sbjct: 121 KAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAI 180

Query: 199 DMYAKGGEIDKARWLFD-RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            MYA  G + +AR + D +    + V WN MI GYL+ G+ +   +LF+ M      PD 
Sbjct: 181 RMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDR 234

Query: 258 VTVSN---ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
             +S    ++    + G ++ A   F  +KE+D + W+ MI GY Q G   +AL +F++M
Sbjct: 235 SMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQM 294

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
             E +RP KF + SV+S+CA L +L  G+ +H  A    +  D ++ ++L+DMY KCG  
Sbjct: 295 QKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRI 354

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           D AW VF  M  + V SWN+MI G A +G+  +A+ L+ K+   ++ P+  TFV VL+AC
Sbjct: 355 DLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNAC 411

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H  L ++G   F+S+   +G+ P ++HY C+++LLGR+  + +A  ++ S+P +P   +
Sbjct: 412 AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAV 471

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W  LL  C   G+++ GE   + L ELEP N+G Y +LSN+YA  GRWE+V  +R  MK 
Sbjct: 472 WGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKE 531

Query: 555 KNVKKFAAYSWIEID-NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
           + +K     S I++   +VHKF+  D +HP+ + IY+ L K+ ++LQ  G+ P+   VL 
Sbjct: 532 RGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLF 591

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  EEEK  ++  HSEKLA+ + LI    G T IRI+KN+RVC DCH   K  S +  R 
Sbjct: 592 DIDEEEKETAVWQHSEKLAIGFGLINTSPGTT-IRIVKNLRVCEDCHSATKLISQVYNRE 650

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD  R+HHF  G CSCKD W
Sbjct: 651 IIVRDRIRYHHFRNGACSCKDFW 673



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 172/330 (52%), Gaps = 7/330 (2%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIIS-WNALLSAHARSGSVQDLRALFDKMPIRDS 121
           N ++  Y + G++  AR+LF+ MP R +IS WNA++S  +R G V+  R  FD+M  RD 
Sbjct: 209 NAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDE 268

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +S++  I G+  +G   EAL++F +MQK++  P  +   S L+ACA L  L +G+ IH  
Sbjct: 269 ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY 328

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
               ++  +  +  +L DMYAK G ID A  +F++M+N+ + SWN MI G   +G+ +  
Sbjct: 329 AKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDA 388

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
           IDLF +M +    P+E+T   +L AC   G +     +F+ ++++  V       G   +
Sbjct: 389 IDLFSKMDIY---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVD 445

Query: 302 GKEEDALILFNEMLSEDV--RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
                 L+   E +   +   P      +++ +C K  ++  G+ V GK ++     +  
Sbjct: 446 LLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERV-GKILLELEPQNSG 504

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
             + L ++Y K G  ++   V  +M  R +
Sbjct: 505 RYTLLSNIYAKAGRWEEVGEVRKLMKERGI 534



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 105/251 (41%), Gaps = 52/251 (20%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           L   L+  YAK G++  A ++F+KM  +++ SWNA++   A  G  +D   LF KM I  
Sbjct: 340 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYP 399

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDR---------------------------- 151
           + +++   +   A+ G  ++ L +F+ M+K+                             
Sbjct: 400 NEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKV 459

Query: 152 -----FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG- 205
                 EPT     + L AC +  ++  G+++ GKI++     N      L+++YAK G 
Sbjct: 460 VSSIPTEPTPAVWGALLGACRKHGNVELGERV-GKILLELEPQNSGRYTLLSNIYAKAGR 518

Query: 206 --EIDKARWLFDRMNNRNLVSWNLMISG-------YLKNGQPKKCIDLFQ-------EMQ 249
             E+ + R L      +     +++  G        + +G   +  D++Q        +Q
Sbjct: 519 WEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQ 578

Query: 250 LLGLNPDEVTV 260
           + G  PD   V
Sbjct: 579 MEGYEPDPSQV 589


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/578 (37%), Positives = 325/578 (56%), Gaps = 37/578 (6%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT   + S L +C     ++ GKQ+H ++ +   G +  +   L ++Y     +  AR L
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FDR+   N+  WN++I GY  NG  +  + L+ +M   GL PD  T   +L AC      
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 268 ----------FQTGRIDD-------------------AGRLFHVIKEKDNVCWTTMIVGY 298
                      QTG   D                   A  +F  I  +D V W +M+  Y
Sbjct: 193 EHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAY 252

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +QNG  +  L L +EM+   +RP + ++ + +S+ A  A+L  G+ +HG +     +   
Sbjct: 253 SQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHD 312

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V +AL+DMY KCG    A  +F  +  + VVSWN+MI GYA +G   EAL L++++   
Sbjct: 313 KVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NR 371

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             KPD  TFV VLSAC H  L E G   F+++   + I P++ HY CM++LLG S  +D+
Sbjct: 372 VAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDE 431

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A +LI  +   P+S +W  LL+ C +  +++ GE+A   L ELEP +AG Y++LSN+YA 
Sbjct: 432 AYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQ 491

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+WE VA +R  M  + +KK  A SWIE+ NKVH F+S D +HP ++ IY EL ++   
Sbjct: 492 AGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGL 551

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++EAG+SP+T  V HD +++EK   +C HSE+LA+A+ LI  P G T + I KN+R+C D
Sbjct: 552 MKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPG-TRLLITKNLRICED 610

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH+ +KF S I  R I +RD NR+HHF  G CSC D W
Sbjct: 611 CHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 179/412 (43%), Gaps = 85/412 (20%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK  +A+          +I+   L++ +    S+   R LFD++P  +   +N  I G
Sbjct: 92  KPGKQLHAQVCLAGFGFDTVIA-TKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRG 150

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A  G    A+Q++ +M      P ++T    L ACA L  +  G++IH  +V      +
Sbjct: 151 YAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKD 210

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           VFV  AL DMYAK G +  AR +FD++  R+ V WN M++ Y +NG P  C+ L  EM L
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270

Query: 251 LGLNPDEVTVSNILGAC--------------------FQT---------------GRIDD 275
            GL P E T+   + A                     F++               G +  
Sbjct: 271 TGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRV 330

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  K  V W  MI GY  +G   +AL LF EM +   +PD  +   V+S+C+ 
Sbjct: 331 ARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACS- 388

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-------PTRN 388
                HG                             G+ ++ W  F  M       PT  
Sbjct: 389 -----HG-----------------------------GLLEEGWMFFETMIRDYKIDPT-- 412

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADL 439
           V  +  M++    +G+  EA   Y+ ++Q  + PDS  + ++L++C +HA++
Sbjct: 413 VQHYTCMVDLLGHSGRLDEA---YNLIMQMKVLPDSGVWGALLNSCKIHANV 461


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/686 (34%), Positives = 371/686 (54%), Gaps = 60/686 (8%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LLH   + G L  AR +   M       D+    +L++A+ R G+ +D R LFD MP R+
Sbjct: 84  LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERN 143

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++   + G+         L+VF  M +    P+ YT  + LNAC    D+  GKQ+HG
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +         + N+L  +YAK G +D A   F R+  +N+++W  MIS   ++   ++
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED---EE 260

Query: 241 CIDL----FQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
           C++L    F +M + G+ P+E T+++++  C                             
Sbjct: 261 CVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKN 320

Query: 268 ------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---NGKEE--------DALIL 310
                  + G  D+A RLF  +++   + W  MI GY Q   + K++         AL +
Sbjct: 321 STMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTI 380

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F ++    ++PD F+ SS++S C+ + +L  G+ +H + +  G   D++V+SAL++MY K
Sbjct: 381 FRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNK 440

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG   DA   F  MPTR  V+W SMI+GY+Q+GQ  EA+ L++++    ++P+  TFVS+
Sbjct: 441 CGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSL 500

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC +A L E  +++FD +   + I P +DHY CMI++  R   V+ A   IK    +P
Sbjct: 501 LSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEP 560

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           N  IWS+L++ C   G+++    AA  L EL+P     YI+L NMY +  RW+DVA +R 
Sbjct: 561 NEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRK 620

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            MK ++V      SWI I +KV+ F + DRTHP+   +Y+ L  L++K +  G+ P    
Sbjct: 621 LMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNA 680

Query: 611 VLHDTQEEEK--VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
            L D++++EK    S+ +HSE+LA+A  L++ P G T +R+ KNI +C DCH  +K  S 
Sbjct: 681 ELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGAT-VRVTKNITMCRDCHSSIKLFSL 739

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKD 694
           +  R II+RDS R H F  G CSC D
Sbjct: 740 LENREIIVRDSKRLHKFKDGRCSCGD 765



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E   T ++  C    D+ L K++Q+       E N   + N  ++ Y + G+   
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLP-VKNSTMYLYLRKGETDE 334

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  LF++M    II+WNA++S +A     Q + +  D +  R             ++GF 
Sbjct: 335 AMRLFEQMEDASIITWNAMISGYA-----QIMDSAKDDLQAR-------------SRGF- 375

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +AL +F  +++   +P  +T  S L+ C+ ++ L +G+QIH + +      +V V +AL
Sbjct: 376 -QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 434

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MY K G I  A   F  M  R  V+W  MISGY ++GQP++ I LF+EM+L G+ P+E
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFN 312
           +T  ++L AC   G +++A   F ++K++  +      +  MI  + + G+ EDA   F+
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FS 551

Query: 313 EMLSEDVRPDKFSISSVVSSC 333
            +      P++   SS+V+ C
Sbjct: 552 FIKRTGFEPNEAIWSSLVAGC 572



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 4/191 (2%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML+E           ++  C ++ SL   + VHG     G   D+ V+++L++ Y +CG 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
             DA  +F+ MP RNVV+W +++ GY  N Q    L ++ ++L+    P  +T  + L+A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 434 CLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           CL +   + G Q H  +I        S+ +  C  +L  +   +D A+     +P K N 
Sbjct: 189 CLASCDVDLGKQVHGYAIKYGAESITSMGNSLC--SLYAKLGSLDSALRAFWRIPEK-NV 245

Query: 493 LIWSTLLSVCA 503
           + W+T++S CA
Sbjct: 246 ITWTTMISACA 256


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 362/643 (56%), Gaps = 41/643 (6%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           IS + L+ A  + G +   R +FD M  R  V++N+ IA       S+EA++++  M  +
Sbjct: 100 ISGSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITN 159

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
              P +YT  S   A + L   +  ++ HG  +++G    NVFV +AL DMY K G+  +
Sbjct: 160 NVLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTRE 219

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A+ + DR+  +++V    +I GY + G+  + +  FQ M +  + P+E T +++L +C  
Sbjct: 220 AKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGN 279

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             +   +DD+ R+F  I+  + V WT++
Sbjct: 280 LKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSL 339

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G  QNG+EE ALI F +M+ + ++P+ F++SS +  C+ LA    G+ +HG     G 
Sbjct: 340 ISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGF 399

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D D    S LID+Y KCG +D A  VF+ +   +V+S N+MI  YAQNG   EAL L+++
Sbjct: 400 DRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFER 459

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++   L+P+  T +SVL AC ++ L E G   FDS      I  + DHYACM++LLGR+ 
Sbjct: 460 MINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRK-DKIMLTNDHYACMVDLLGRAG 518

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +++A +++ +    P+ ++W TLLS C +   ++  E   R + E+EP + G  I++SN
Sbjct: 519 RLEEA-EMLTTEVINPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSN 577

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR-THPETEIIYEELS 593
           +YA+ G+W  V  ++S MK   +KK  A SW+EI+ + H F++ D  +HP +E I E L 
Sbjct: 578 LYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLE 637

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +LIKK ++ G+  +   V  D +E  K +S+  HSEKLA+A+ + +   G   IRI+KN+
Sbjct: 638 ELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG--SIRILKNL 695

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCH ++K  S ++ R II RDS RFHHF  G+CSC D W
Sbjct: 696 RVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 340/589 (57%), Gaps = 45/589 (7%)

Query: 117 PIRDSVSYNTAI-----AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           P  +S  +NT I     A     G +   + +F RM+    +P  +T    L + A    
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+ +H +I+   L  + FV+ +L  MY+  G +  AR +FD +   +L SWN     
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWN----- 134

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
                                         +I+ A FQ G +D A  LF V+ E++ + W
Sbjct: 135 ------------------------------SIINANFQAGLVDMARNLFAVMPERNVISW 164

Query: 292 TTMIVGYTQNGKEEDALILFNEML---SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + MI GY + G+ ++AL LF EM      DVRP++F++S V+++C +L +L HG+  H  
Sbjct: 165 SCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAY 224

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDA-WTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
               G+  D+++ +ALIDMY KCG  + A W   N+ P ++V++W++MI+G A +G   E
Sbjct: 225 IDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEE 284

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            + L+ K++ + ++P++ TF++V  AC+H  L   G+++   ++  + I P++ HY CM+
Sbjct: 285 CVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMV 344

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L GR+  + +A +++KS+P +P+ L+W  LLS   M GDI+  E+A + L ELEP N+G
Sbjct: 345 DLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSG 404

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++LSN+YA  GRWEDV  +R  M++  +KK    S IE+   +H+F   D +HPET  
Sbjct: 405 AYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQ 464

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I+  L +++++L+  G+  NTK VL D  EE K  ++  HSEKLALAY  +K   G TPI
Sbjct: 465 IHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPG-TPI 523

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI+KN+R+C DCH+ +K  S +  R II+RD NRFHHF  G CSC+D W
Sbjct: 524 RIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 153/294 (52%), Gaps = 17/294 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+   L+  Y+  G L +AR +FD++P  D+ SWN++++A+ ++G V   R LF  MP R
Sbjct: 100 FVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPER 159

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQK---DRFEPTDYTHVSALNACAQLLDLRRGK 176
           + +S++  I G+   G  +EAL +F  MQ    +   P ++T    L AC +L  L  GK
Sbjct: 160 NVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGK 219

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKN 235
             H  I    +  +V +  AL DMYAK G ++KA W+F  +  N+++++W+ MISG   +
Sbjct: 220 WAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMH 279

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT-- 293
           G  ++C+ LF +M   G+ P+ VT   +  AC   G + +       + E  ++  T   
Sbjct: 280 GLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQH 339

Query: 294 ---MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
              M+  Y + G+ ++A   +N + S  + PD     +++S      S  HG +
Sbjct: 340 YGCMVDLYGRAGRIKEA---WNVVKSMPMEPDVLVWGALLS-----GSRMHGDI 385


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/666 (36%), Positives = 355/666 (53%), Gaps = 69/666 (10%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R      A  L S +    ++  ++ L N LL  Y K G +  A  LFD+MP RD +S
Sbjct: 13  CARRQSASAAGELHSQIIKAGFD-KSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVS 71

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W ++L+AH ++            +P R     NT         F+ + LQ          
Sbjct: 72  WASILTAHNKA-----------LIPRRTLSMLNTM--------FTHDGLQ---------- 102

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  +     + AC+ L  LR GKQ+H + ++     +  V+++L DMY K G+ D+AR 
Sbjct: 103 -PDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARA 161

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  +N VSW  MISGY ++G+  + +DLF           +  V N+         
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL----------QAPVRNLFS------- 204

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVS 331
                             WT +I G  Q+G    +  LFNEM  E +   D   +SSVV 
Sbjct: 205 ------------------WTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVG 246

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            CA LA L  G+ +HG  + LG +  L +S+AL+DMY KC     A  +F  MP ++V+S
Sbjct: 247 GCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVIS 306

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+G+  EAL LYD+++   +KP+  TFV +L AC HA L  RG+  F S++
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT 366

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             + I PSL HY C+++LL RS  +D+A +L+  +P KP+   W++LLS C    +++ G
Sbjct: 367 TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
              A  + +L+P +   YI+LSN+YA    W  V+ +R  M S  V+K   YS I+    
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486

Query: 572 VHKF-VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
              F   E   HP    I   L  L  ++++ G+ PNT  VL+D +++EK K + +HSE+
Sbjct: 487 SQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSER 546

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY L+K   G T IRI+KN+R+CGDCH  +KF SDI+ R I++RD+ R+HHF  G C
Sbjct: 547 LAVAYGLLKAVPG-TIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKC 605

Query: 691 SCKDNW 696
           SC D W
Sbjct: 606 SCNDFW 611



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 185/353 (52%), Gaps = 11/353 (3%)

Query: 11  IDTLYSR-GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           ++T+++  G       +  +V  C+ +  + L K++ +   L+ +  +   + + L+  Y
Sbjct: 92  LNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXF-CDDEVVKSSLIDMY 150

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            K G+   AR +FD +  ++ +SW +++S +ARSG   +   LF + P+R+  S+   I+
Sbjct: 151 TKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALIS 210

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLG 188
           G    G    +  +F+ M+++  +  D   +S+ +  CA L  L  GKQIHG ++     
Sbjct: 211 GLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFE 270

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
             +F+ NAL DMYAK  +I  A+ +F RM  ++++SW  +I G  ++G+ ++ + L+ EM
Sbjct: 271 SCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGK 303
            L  + P+EVT   +L AC   G +     LF  +    ++      +T ++   +++G 
Sbjct: 331 VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGH 390

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            ++A  L +++     +PD+ + +S++S+C +  +L  G  +  + + L  +D
Sbjct: 391 LDEAENLLDKI---PFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPED 440


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/672 (34%), Positives = 361/672 (53%), Gaps = 68/672 (10%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL  +L++  +  G++ YAR LFD+    D+  WNA++ +++R+                
Sbjct: 89  FLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRN---------------- 132

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                             R+ ++++  M+     P  +T    L AC +LLD      IH
Sbjct: 133 ---------------NMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIH 177

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G+I+    G +VFV+N L  +YAK G I  A+ +FD + +R +VSW  +ISGY +NG+  
Sbjct: 178 GQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAV 237

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTGRIDD-------- 275
           + + +F +M+  G+ PD + + +IL                G   + G  D+        
Sbjct: 238 EALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLT 297

Query: 276 -----------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                      A   F  +K  + + W  MI GY +NG  E+A+ LF+ M+S +++PD  
Sbjct: 298 AFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSV 357

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ S V + A++ SL   Q +           D+ V+++LIDMY KCG  + A  VF+  
Sbjct: 358 TVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRN 417

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             ++VV W++MI GY  +GQ  EA+ LY  + Q  + P+  TF+ +L+AC H+ L + G 
Sbjct: 418 SDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGW 477

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
             F  +     I P  +HY+C+++LLGR+  + +A   I  +P +P   +W  LLS C +
Sbjct: 478 ELFHCMKDFE-IVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKI 536

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
              +  GE AA  LF L+P N G Y+ LSN+YA+   W+ VA +R  M+ K + K   YS
Sbjct: 537 YRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYS 596

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
            IEI+ K+  F   D++HP  + I++EL +L ++L+E GF P T+ VLHD   EEK +++
Sbjct: 597 VIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENL 656

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
            +HSE++A+AY LI    G T +RI KN+R C +CH  +K  S ++ R II+RD+NRFHH
Sbjct: 657 SFHSERIAVAYGLISTAPGTT-LRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHH 715

Query: 685 FVGGNCSCKDNW 696
           F  G CSC D W
Sbjct: 716 FKDGLCSCGDYW 727



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 154/314 (49%), Gaps = 35/314 (11%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R   QIH ++V+  L  N F+   L +  +  G+I  AR LFD     ++  WN +I  Y
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------- 269
            +N   +  +++++ M+  G++PD  T   +L AC +                       
Sbjct: 130 SRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDV 189

Query: 270 ------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                        G I  A  +F  +  +  V WT++I GY QNGK  +AL +F++M + 
Sbjct: 190 FVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNN 249

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V+PD  ++ S++ +   +  L  G+ +HG  + +G++D+  +  +L   Y KCG+   A
Sbjct: 250 GVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVA 309

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
            + F+ M T NV+ WN+MI+GYA+NG   EA+ L+  ++  N+KPDS T  S + A    
Sbjct: 310 KSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQV 369

Query: 438 DLFERGQNHFDSIS 451
              E  Q   D +S
Sbjct: 370 GSLELAQWMDDYVS 383



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 15/285 (5%)

Query: 8   RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           +   D LY R    T  ++T ++    +      A R+ S M  N  +P+   L + +L 
Sbjct: 209 KVVFDGLYHR----TIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVS-ILR 263

Query: 68  FYAKSGKLFYARDLFD---KMPLRD----IISWNALLSAHARSGSVQDLRALFDKMPIRD 120
            Y     L   R +     KM L D    +IS  A    +A+ G V   ++ FD+M   +
Sbjct: 264 AYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAF---YAKCGLVTVAKSFFDQMKTTN 320

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            + +N  I+G+A  G + EA+ +F  M     +P   T  SA+ A AQ+  L   + +  
Sbjct: 321 VIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDD 380

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +   N G ++FV  +L DMYAK G ++ AR +FDR +++++V W+ MI GY  +GQ  +
Sbjct: 381 YVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWE 440

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            I+L+  M+  G+ P++VT   +L AC  +G + +   LFH +K+
Sbjct: 441 AINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKD 485



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 157/343 (45%), Gaps = 34/343 (9%)

Query: 233 LKNGQPKKCID-LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           + N   K+ +D +   + + GL  +   ++ ++      G+I  A +LF      D   W
Sbjct: 63  IDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMW 122

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             +I  Y++N    D + ++  M    V PD F+   V+ +C +L       ++HG+ + 
Sbjct: 123 NAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIK 182

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G   D+ V + L+ +Y KCG    A  VF+ +  R +VSW S+I+GYAQNG+ +EAL +
Sbjct: 183 YGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRM 242

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL---DHYACMIN 468
           + ++    +KPD    VS+L A    D  E+G+       ++HG    +   D  A +I+
Sbjct: 243 FSQMRNNGVKPDWIALVSILRAYTDVDDLEQGR-------SIHGFVIKMGLEDEPALLIS 295

Query: 469 LLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           L    +     V + KS   +    N ++W+ ++S  A  G   H E         E +N
Sbjct: 296 LTAFYAKCG-LVTVAKSFFDQMKTTNVIMWNAMISGYAKNG---HAE---------EAVN 342

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSS-MKSKNVKKFAAYSWIE 567
              Y++  N+        D  ++RS+ + S  V       W++
Sbjct: 343 LFHYMISRNIKP------DSVTVRSAVLASAQVGSLELAQWMD 379


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/644 (35%), Positives = 352/644 (54%), Gaps = 36/644 (5%)

Query: 88   RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            R+    +AL+ A++  G V D R +FD +  +D+V++   ++ ++        LQ+FS+M
Sbjct: 564  RNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKM 623

Query: 148  QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +    +   +   S L A   L  +  GK IH   V         V  AL DMYAK G I
Sbjct: 624  RVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNI 683

Query: 208  DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            + AR  F+ + N +++ W+LMIS Y +  Q ++  +LF  M    ++P+E ++S++L AC
Sbjct: 684  EDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQAC 743

Query: 268  FQTGRID-----------------------------------DAGRLFHVIKEKDNVCWT 292
                 +D                                    +  +F  +++ + V W 
Sbjct: 744  ANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWN 803

Query: 293  TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            T+IVGY+++G  E AL +F EM +  V   + + SSV+ +CA  AS+ H   VH      
Sbjct: 804  TIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKS 863

Query: 353  GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
              + D +VS++LID Y KCG   DA  +F  +   ++VSWN++I+GYA +GQ   A  L+
Sbjct: 864  TFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELF 923

Query: 413  DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            D + + ++K +  TFV++LS C    L  +G + FDS+   HGI PS++HY C++ LLGR
Sbjct: 924  DMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGR 983

Query: 473  SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
            +  ++ A++ I  +P  P++++W  LLS C +  +++ G  +A  + E+EP +   Y++L
Sbjct: 984  AGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLL 1043

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
            SNMY+A G  + VA  R SM++  V+K    SW+EI  +VH F      HP   +I   L
Sbjct: 1044 SNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAML 1103

Query: 593  SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
              L  K    G+ P+T  VLHD +EE+KV+ +  HSE+LALAY L+  P G  PIRIMKN
Sbjct: 1104 EWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPG-HPIRIMKN 1162

Query: 653  IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +R C DCH   K  S I+ + II+RD NRFHHF  G CSC D W
Sbjct: 1163 LRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 187/381 (49%), Gaps = 41/381 (10%)

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGG-NVFVRNALTDMYAKGGEIDKARWLF 214
           Y +   L  C    D R G+ +HG +V  G L   ++F  N L +MY K G    A  +F
Sbjct: 429 YAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVF 488

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG--------- 265
           D +  RN+VS+  ++ G+   G+ ++   LFQ ++  G   ++  ++ +L          
Sbjct: 489 DGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLG 548

Query: 266 ------ACF--------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                 AC                       G + DA R+F  I  KD V WT M+  Y+
Sbjct: 549 LAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYS 608

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           +N   E+ L +F++M     + + F+++SV+ +   L+S+  G+ +H  +V    D +  
Sbjct: 609 ENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERH 668

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V  AL+DMY KCG  +DA   F M+   +V+ W+ MI+ YAQ  Q+ +A  L+ ++++ +
Sbjct: 669 VYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSS 728

Query: 420 LKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           + P+ F+  SVL AC +  L + G Q H  +I   H     L     +I+L  + SD++ 
Sbjct: 729 VSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGH--ESELFVGNALIDLYAKCSDMES 786

Query: 479 AVDLIKSLPHKPNSLIWSTLL 499
           ++++  SL    N + W+T++
Sbjct: 787 SLEIFSSL-RDVNEVSWNTII 806



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 48/329 (14%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G    A R+F  + E++ V + T++ G+   G+ E+A  LF  +  E    ++F +++
Sbjct: 477 KVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTT 536

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+     + +L     VH  A  LG D +  V SALID Y  CGV  DA  VF+ +  ++
Sbjct: 537 VLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKD 596

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA--CLHADLFERG--- 443
            V+W +M++ Y++N      L ++ K+     K + F   SVL A  CL + +  +G   
Sbjct: 597 AVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHA 656

Query: 444 ---QNHFDSISAVHGITPSLDHYA------------------------CMINLLGRSSDV 476
              +  +D+   V+G    LD YA                         MI+   + +  
Sbjct: 657 CSVKTLYDTERHVYGAL--LDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQN 714

Query: 477 DKAVDLIKSLPH---KPNSLIWSTLLSVCA------MKGDIKHGEMAARHLFELEPINAG 527
           ++A +L   +      PN    S++L  CA      +   I +  +   H  EL   NA 
Sbjct: 715 EQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNA- 773

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKN 556
               L ++YA C   E    I SS++  N
Sbjct: 774 ----LIDLYAKCSDMESSLEIFSSLRDVN 798



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 2/119 (1%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDDLLVSSALIDMYCKCGVTDDAWT 379
           D ++ + ++  C        G+ VHG  V  G     DL  ++ L++MY K G    A  
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
           VF+ +P RN+VS+ +++ G+A  G+  EA AL+ +L  E  + + F   +VL   +  D
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
           +T+  Y+ ++  C     +    ++   ++ + +  +T  + N L+  YAK G +  AR+
Sbjct: 832 STQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDT-IVSNSLIDSYAKCGCIRDARE 890

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGF 136
           +F+ +   D++SWNA++S +A  G     + LFD M       + +++   ++   + G 
Sbjct: 891 IFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGL 950

Query: 137 SREALQVFSRMQKDR-FEPT 155
             + L +F  M+ D   EP+
Sbjct: 951 VSQGLSLFDSMRLDHGIEPS 970


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 371/681 (54%), Gaps = 82/681 (12%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMP-LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           N LL+ Y K G L +A+ +F KM   R++ISW+ +  AHA  G+V               
Sbjct: 97  NALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVW-------------- 142

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                            EAL+ F  M     + T    V+ L+AC+    ++ G+ IH  
Sbjct: 143 -----------------EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSC 185

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPK 239
           I +      + V NA+  MY + G +++AR +FD M+   R++VSWN+M+S Y+ N + K
Sbjct: 186 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGK 245

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQT-----GRI--------------------- 273
             I L+Q MQL    PD+VT  ++L AC        GR+                     
Sbjct: 246 DAIQLYQRMQL---RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 302

Query: 274 ---------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-------SE 317
                     +A  +F  ++++  + WTT+I  Y +     +A  LF +ML       S+
Sbjct: 303 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 362

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V+PD  +  +++++CA +++L  G++V  +A   G+  D  V +A++++Y KCG  ++A
Sbjct: 363 RVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEA 422

Query: 378 WTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
             +F+ + +R +V  WN+MI  YAQ GQ  EAL L+ ++  E ++PDSF+FVS+L AC H
Sbjct: 423 RRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSH 482

Query: 437 ADLFERGQNHFDSISAVH-GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
             L ++G+++F S++  +  +T ++ H+ C+ +LLGR   + +A + ++ LP KP+++ W
Sbjct: 483 TGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAW 542

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           ++LL+ C    D+K  +  A  L  LEP  A  Y+ LSN+YA   +W  VA +R  M  +
Sbjct: 543 TSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQ 602

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            VKK    S IEI   +H F + D  HP    I EEL+KL  +++E G+ P+TK+VLH  
Sbjct: 603 GVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFV 662

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
            E+EK + +  HSE+LA+A  LI  P G TP+R+ KN+RVC DCH   K  S I GR I+
Sbjct: 663 DEQEKERLLFSHSERLAIALGLISTPLG-TPLRVTKNLRVCSDCHTATKLISKIAGRKIV 721

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD  RFH F  G CSC+D W
Sbjct: 722 VRDPTRFHLFKDGKCSCQDYW 742



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 239/483 (49%), Gaps = 50/483 (10%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +A   S  D +A FD +  R+  S+   +A FA  G S+E L+   RM++D   P   T 
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN- 218
           ++AL +C     LR G +IH  +V   L  +  V NAL +MY K G +  A+ +F +M  
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR- 272
            RN++SW++M   +  +G   + +  F+ M LLG+   +  +  IL AC      Q GR 
Sbjct: 122 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRM 181

Query: 273 -----------------------------IDDAGRLFHVIKE--KDNVCWTTMIVGYTQN 301
                                        +++A ++F  + E  +D V W  M+  Y  N
Sbjct: 182 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHN 241

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
            + +DA+ L+  M    +RPDK +  S++S+C+    +  G+V+H + V   ++ +++V 
Sbjct: 242 DRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVG 298

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ---- 417
           +AL+ MY KCG   +A  VF+ M  R+++SW ++I+ Y +     EA  L+ ++L+    
Sbjct: 299 NALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKN 358

Query: 418 ---ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
              + +KPD+  FV++L+AC      E+G+      +A  G++        ++NL G+  
Sbjct: 359 GSSQRVKPDALAFVTILNACADVSALEQGK-MVSEQAASCGLSSDKAVGTAVVNLYGKCG 417

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
           ++++A  +  ++  +P+  +W+ +++V A  G   H  +      E+E +    +  +S 
Sbjct: 418 EIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQ-SHEALKLFWRMEMEGVRPDSFSFVSI 476

Query: 535 MYA 537
           + A
Sbjct: 477 LLA 479



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 197/474 (41%), Gaps = 125/474 (26%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  AT+ A   ++  C+    V+  + + S + L+ +E +   + N ++  Y + G +  
Sbjct: 155 GIKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFE-SELLVANAVMTMYGRCGAVEE 213

Query: 78  ARDLFDKM--PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           AR +FD M   LRD++SWN +LS +  +   +D                           
Sbjct: 214 ARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKD--------------------------- 246

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
               A+Q++ RMQ     P   T+VS L+AC+   D+  G+ +H +IV   L  NV V N
Sbjct: 247 ----AIQLYQRMQ---LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGN 299

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN- 254
           AL  MYAK G   +AR +FD+M  R+++SW  +IS Y++     +   LFQ+M  L  N 
Sbjct: 300 ALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNG 359

Query: 255 ------PDEVTVSNILGACF-----------------------------------QTGRI 273
                 PD +    IL AC                                    + G I
Sbjct: 360 SSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEI 419

Query: 274 DDAGRLFHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           ++A R+F  +  + +V  W  MI  Y Q G+  +AL LF  M  E VRPD FS  S++ +
Sbjct: 420 EEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLA 479

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP------T 386
           C+                                     G+ D   + F  M       T
Sbjct: 480 CSHT-----------------------------------GLEDQGKSYFTSMTTEYRNVT 504

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADL 439
           R +  +  + +   + G+  EA    +KL    +KPD+  + S+L+AC  H DL
Sbjct: 505 RTIQHFGCVADLLGRGGRLKEAEEFLEKL---PVKPDAVAWTSLLAACRNHRDL 555



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 191/435 (43%), Gaps = 82/435 (18%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYA       A+  FD +  RNL SW  +++ +  +GQ K+ +   + M+  G+ PD VT
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 260 VSNILGACF-----------------------------------QTGRIDDAGRLFHVIK 284
               LG+C                                    + G +  A R+F  ++
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 285 EKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              NV  W+ M   +  +G   +AL  F  ML   ++  K ++ +++S+C+  A +  G+
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQ 401
           ++H    + G + +LLV++A++ MY +CG  ++A  VF+ M    R+VVSWN M++ Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD----------------------- 438
           N +  +A+ LY ++    L+PD  T+VS+LSAC  A+                       
Sbjct: 241 NDRGKDAIQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 439 ------LFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--- 488
                 ++ +  +H ++ +    +   S+  +  +I+   R   V +A  L + +     
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 489 -------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACG 540
                  KP++L + T+L+ CA    ++ G+M +          +      + N+Y  CG
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCG 417

Query: 541 RWEDVASIRSSMKSK 555
             E+   I  ++ S+
Sbjct: 418 EIEEARRIFDAVCSR 432



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 38/329 (11%)

Query: 14  LYSRGQAATEE-AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           LY R Q   ++  Y  L+  C+   DV L + L   +  +  E N   + N L+  YAK 
Sbjct: 250 LYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV-IVGNALVSMYAKC 308

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G    AR +FDKM  R IISW  ++SA+ R   V +   LF +M                
Sbjct: 309 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQM---------------- 352

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                   L++       R +P     V+ LNACA +  L +GK +  +     L  +  
Sbjct: 353 --------LELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKA 404

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLL 251
           V  A+ ++Y K GEI++AR +FD + +R  V  WN MI+ Y + GQ  + + LF  M++ 
Sbjct: 405 VGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEME 464

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLF--HVIKEKDNVCWTTMIVGYT-----QNGKE 304
           G+ PD  +  +IL AC  TG ++D G+ +   +  E  NV  T    G       + G+ 
Sbjct: 465 GVRPDSFSFVSILLACSHTG-LEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRL 523

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSC 333
           ++A     ++    V+PD  + +S++++C
Sbjct: 524 KEAEEFLEKL---PVKPDAVAWTSLLAAC 549


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/641 (34%), Positives = 358/641 (55%), Gaps = 39/641 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL++ + + G V   R LFDKMP RD +S+N  I+G+       E L++F RM+
Sbjct: 169 DVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMR 228

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P   T  S ++AC  L D R G Q+H  +V     GN+ V N+L  MY   G   
Sbjct: 229 ELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWK 288

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A  +F  M  R++VSW  +ISG + N  P K ++ ++ M++ G  PDEVT++++L AC 
Sbjct: 289 EAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACA 348

Query: 269 QTG-----------------------------------RIDDAGRLFHVIKEKDNVCWTT 293
             G                                   RI+ A  +FH I +KD + WT+
Sbjct: 349 SLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTS 408

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G   N +  +ALI F +M+ +  +P+  ++ S +S+CA++ +L  G+ +H  A+  G
Sbjct: 409 VINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHAHALKAG 467

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D  + +A++D+Y +CG    A   FN+   ++V +WN ++ GYAQ G+    + L+ 
Sbjct: 468 MGFDGFLPNAILDLYVRCGRMRTALNQFNL-NEKDVGAWNILLTGYAQKGKGAMVMELFK 526

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++++  + PD  TF+S+L AC  + +   G  +F  +   + ITP+L HYAC+++LLGR+
Sbjct: 527 RMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRA 586

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A + I+ +P KP+  IW  LL+ C +   +  GE+AA+H+F+ +  + G YI+L 
Sbjct: 587 GKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLC 646

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA  G+W++VA +R +MK + +      SW+E+  KVH F+S D  HP+ + I   L 
Sbjct: 647 NLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLE 706

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
              +K++ +GF+   +    D  +  K    C HSE+ A+AY LI    G+ PI + KN+
Sbjct: 707 GFYEKMKTSGFN-GQECSSMDGIQTSKADIFCGHSERQAIAYSLINSAPGM-PIWVTKNL 764

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            +C  CH  +KF S I+ R I +RD+ +FHHF  G CSC D
Sbjct: 765 YMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 142/449 (31%), Positives = 228/449 (50%), Gaps = 41/449 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NALLS   R G V +   +F +M  RD  S+N  + G+   GF  EAL ++ R+      
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  YT  S L +CA  +DL RG+++H  +V  +   +V V NAL  MY K G++  AR L
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD+M  R+ +SWN MISGY +N +  + ++LF  M+ L ++PD +T+++++ AC      
Sbjct: 193 FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDE 252

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G   +A  +F  ++ +D V WTT+I G 
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             N   + AL  +  M      PD+ +I+SV+S+CA L  L  G  +H  A   G    +
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYV 372

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V+++LIDMY KC   + A  +F+ +P ++V+SW S+ING   N +  EAL  + K++ +
Sbjct: 373 VVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILK 432

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + KP+S T +S LSAC        G+  H  ++ A  G    L +   +++L  R   + 
Sbjct: 433 S-KPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPN--AILDLYVRCGRMR 489

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A++      ++ +   W+ LL+  A KG
Sbjct: 490 TALNQFN--LNEKDVGAWNILLTGYAQKG 516



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/519 (23%), Positives = 211/519 (40%), Gaps = 93/519 (17%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N+ +      G   +AL+  + MQ+ +    +   V+ +  C        G+ +  K V+
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVW-KAVL 60

Query: 185 GNLGGNVFVR--NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +L   + VR  NAL  M+ + G++  A  +F RM  R+L SWN+++ GY K G   + +
Sbjct: 61  SSLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEAL 120

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            L+  +   G+ PD  T  ++L +C                                   
Sbjct: 121 CLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMY 180

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G +  A  LF  +  +D + W  MI GY +N +  + L LF  M    + PD  +++
Sbjct: 181 VKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMT 240

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+S+C  L     G  +H   V    D ++ V ++LI MY   G   +A +VF+ M  R
Sbjct: 241 SVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECR 300

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSW ++I+G   N    +AL  Y  +      PD  T  SVLSAC      + G    
Sbjct: 301 DVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK-- 358

Query: 448 DSISAVHGITPSLDHYA------CMINLLGRSSDVDKAVDLIKSLP-------------- 487
                +H +     H         +I++  +   ++KA+++   +P              
Sbjct: 359 -----LHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGL 413

Query: 488 -------------------HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG- 527
                               KPNS+   + LS CA  G +  G+    H  +      G 
Sbjct: 414 RINNRCFEALIFFRKMILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGF 473

Query: 528 -PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            P  +L ++Y  CGR      +R+++   N+ +    +W
Sbjct: 474 LPNAIL-DLYVRCGR------MRTALNQFNLNEKDVGAW 505



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 191/455 (41%), Gaps = 99/455 (21%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T ++  C  + D  L  +L S++    Y+ N + ++N L+  Y   G    A  +F  M 
Sbjct: 240 TSVISACELLGDERLGTQLHSYVVRTAYDGNIS-VYNSLIQMYLSVGHWKEAESVFSGME 298

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            RD++SW  ++     SG V +L  L DK                        AL+ +  
Sbjct: 299 CRDVVSWTTII-----SGCVDNL--LPDK------------------------ALETYKT 327

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH------GKIVVGNLGGNVFVRNALTDM 200
           M+     P + T  S L+ACA L  L  G ++H      G I+       V V N+L DM
Sbjct: 328 MEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILY------VVVANSLIDM 381

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y+K   I+KA  +F ++ +++++SW  +I+G   N +  + +  F++M +L   P+ VT+
Sbjct: 382 YSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKM-ILKSKPNSVTL 440

Query: 261 SNILGACFQTGRIDDAGRLFHV-----------------------------------IKE 285
            + L AC + G +   G+  H                                    + E
Sbjct: 441 ISALSACARVGAL-MCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFNLNE 499

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QV 344
           KD   W  ++ GY Q GK    + LF  M+  ++ PD  +  S++ +C++   +  G + 
Sbjct: 500 KDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEY 559

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING----- 398
                V   +  +L   + ++D+  + G  ++A      MP + +   W +++N      
Sbjct: 560 FQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHR 619

Query: 399 -------YAQN--GQDLEALALYDKLLQENLKPDS 424
                   AQ+   QD E++  Y  +L  NL  DS
Sbjct: 620 HVLLGELAAQHIFKQDAESIGYY--ILLCNLYADS 652


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/638 (34%), Positives = 360/638 (56%), Gaps = 45/638 (7%)

Query: 96   LLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            L+S + + GS+ +   +F +MP+  R  V++N  +  +A    S+EA      M +    
Sbjct: 479  LVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P   +  S L++C       +  Q+    ++ +   +  +  AL  M+ +  E+++AR +
Sbjct: 539  PDALSFTSVLSSCY----CSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSV 594

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
            FD M++ ++VSW  M+S   +N   K+   LF+ MQL G+ PD+ T++  L  C  +   
Sbjct: 595  FDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTL 654

Query: 271  --GRI------------------------------DDAGRLFHVIKEKDNVCWTTMIVGY 298
              G+I                               +A   F  +K +D V W  M   Y
Sbjct: 655  GLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAY 714

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             Q G  ++A++LF  M  E V+PDK + S+ ++     A +  G++ HG A   G+D D+
Sbjct: 715  AQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDV 774

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             V++ L+ +Y KCG  D+A ++F       VV  N++I   AQ+G   EA+ ++ K+ QE
Sbjct: 775  SVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQE 834

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             ++PD  T VS++SAC HA + E G + F ++    GI+P+L+HYAC ++LLGR+  ++ 
Sbjct: 835  GVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEH 894

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A  +I+ +P + N+L+W++LL  C ++GD + GE  A+ + EL+P N+  +++LSN+Y A
Sbjct: 895  AEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCA 954

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             G+W+D    R  +  +NVK     SW+EI  +VH+FV+ DR+HP+T+ IY  L KL   
Sbjct: 955  TGKWKDADVDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELL 1014

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++ AG+  +  L   D ++E K K++ YHSE++A+A+ LI  P   T ++I+KN+RVCGD
Sbjct: 1015 MRRAGYEADKGL---DAEDELKEKALGYHSERIAIAFGLIATPPDTT-LKIVKNLRVCGD 1070

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH   K+ S I+GR II+RDS RFHHF  G CSCKD W
Sbjct: 1071 CHTATKYISMIMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/536 (25%), Positives = 249/536 (46%), Gaps = 53/536 (9%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSG------KLFYARDLFDKMPLRDIISWNALLSAHAR 102
           + L    PN+  L   +L+  A SG      + F+ R +++   LRD++  NA++S +A+
Sbjct: 325 LRLEGMRPNSVTLIT-ILNALAASGVDFGAARKFHGR-IWESGYLRDVVVGNAIISMYAK 382

Query: 103 SGSVQDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
            G       +F ++  + D +S+NT +    ++    + +  F  M     +P   + ++
Sbjct: 383 CGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDRM--N 218
            LNAC+    L  G++IH  I+          V   L  MY K G I +A  +F  M   
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLP 502

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-------------- 264
           +R+LV+WN+M+  Y +N + K+      EM   G+ PD ++ +++L              
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRM 562

Query: 265 --------GACFQTGRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                    AC +T  I   GR         +F  +   D V WT M+    +N   ++ 
Sbjct: 563 CILESGYRSACLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
             LF  M  E V PDKF++++ + +C    +L  G+++H     +G++ D+ V +AL++M
Sbjct: 623 HHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNM 682

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y  CG   +A + F  M  R++VSWN M   YAQ G   EA+ L+  +  E +KPD  TF
Sbjct: 683 YSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTF 742

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            + L+    + L   G+  F  ++A  G+   +     ++ L  +   +D+A+ L +   
Sbjct: 743 STTLNVSGGSALVSDGK-LFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFR--- 798

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHG--EMAARHLFELEPINAGPYI-MLSNMYAACG 540
               +  W+ +L    +    +HG  E A +  ++++     P +  L ++ +ACG
Sbjct: 799 ---GACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG 851



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 150/553 (27%), Positives = 261/553 (47%), Gaps = 89/553 (16%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN-KGFSREALQVFSRMQKDRF 152
           NA+++ +A+ GS +D  A+F  +P +D VS+      +A  + F  +AL++F  M     
Sbjct: 170 NAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T ++AL AC  L   R G  +H  +    LG +    NAL +MY K G+ + A  
Sbjct: 230 APNVITFITALGACTSL---RDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYG 286

Query: 213 LFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           +F  M +R   +LVSWN MIS  ++ G+    + +F+ ++L G+ P+ VT+  IL A   
Sbjct: 287 VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 270 T-----------GRIDDAGRL-------------------------FHVIKEK-DNVCWT 292
           +           GRI ++G L                         F  I+ K D + W 
Sbjct: 347 SGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWN 406

Query: 293 TMIVGYTQNGKEEDALI-LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           TM+ G +++ K    ++  F+ ML   + P+K S  +++++C+   +L  G+ +H  +++
Sbjct: 407 TML-GASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH--SLI 463

Query: 352 LGVDDDLL---VSSALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDL 406
           L    D +   V++ L+ MY KCG   +A  VF  M  P+R++V+WN M+  YAQN +  
Sbjct: 464 LTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSK 523

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSAC--------LHADLFERGQNHF---DSISAVHG 455
           EA     ++LQ  + PD+ +F SVLS+C        L   + E G        ++ ++HG
Sbjct: 524 EAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHG 583

Query: 456 ----------ITPSLDH-----YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWST 497
                     +   +DH     +  M++    + D  +   L + +  +   P+    +T
Sbjct: 584 RCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLAT 643

Query: 498 LLSVCAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            L  C     +  G++    + E  LE   A    +L NMY+ CG W +  S   +MK++
Sbjct: 644 TLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALL-NMYSNCGDWREALSFFETMKAR 702

Query: 556 NVKKF----AAYS 564
           ++  +    AAY+
Sbjct: 703 DLVSWNIMSAAYA 715



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 232/533 (43%), Gaps = 84/533 (15%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           +AA  + YT L+  C   ND+   KR    +  N       FL N L++ Y + G L  A
Sbjct: 21  RAADLQEYTALLQSCVDSNDLAKGKRAH-ELIANAGLEQHLFLGNCLINMYVRCGSLEEA 79

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
             +F KM  R+++SW AL+SA+A+SG+     ALF  M +  S +               
Sbjct: 80  HAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAA--------------- 124

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL----GGNVFVR 194
                          P  YT V+ LNACA   DL  G+ IH  I    L         V 
Sbjct: 125 ---------------PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVG 169

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLGL 253
           NA+ +MYAK G  + A  +F  +  +++VSW  M   Y +  +     + +F+EM L  L
Sbjct: 170 NAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229

Query: 254 NPDEVTVSNILGACFQT-----------------------------GRIDDAGRLFHVIK 284
            P+ +T    LGAC                                G+  D    + V K
Sbjct: 230 APNVITFITALGACTSLRDGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFK 289

Query: 285 ------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
                 E D V W  MI    + G+  DA+ +F  +  E +RP+  ++ +++++ A    
Sbjct: 290 AMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGV 349

Query: 339 LY-HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMI 396
            +   +  HG+    G   D++V +A+I MY KCG    AWTVF  +  + +V+SWN+M+
Sbjct: 350 DFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTML 409

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
                     + +  +  +L   + P+  +F+++L+AC +++  + G+     I     +
Sbjct: 410 GASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI-----L 464

Query: 457 TPSLDHY-----ACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCA 503
           T   D+        ++++ G+   + +A  + K +P    SL+ W+ +L   A
Sbjct: 465 TRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYA 517



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 140/570 (24%), Positives = 236/570 (41%), Gaps = 114/570 (20%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           + + L +C    DL +GK+ H  I    L  ++F+ N L +MY + G +++A  +F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT------- 270
            RN+VSW  +IS   ++G   +   LF+ M L     P+  T+  +L AC  +       
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 271 --------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G  +DA  +F  I EKD V WT M   Y
Sbjct: 148 SIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAY 207

Query: 299 TQNGK-EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q  +   DAL +F EML + + P+  +  + + +C    SL  G  +H      G+  D
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEAGLGFD 264

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR---NVVSWNSMINGYAQNGQDLEALALYDK 414
            L  +ALI+MY KCG  + A+ VF  M +R   ++VSWN+MI+   + G+  +A+A++ +
Sbjct: 265 PLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 415 LLQENLKPDSFTFVSVLSAC------------LHADLFERG-------QNHFDSISAVHG 455
           L  E ++P+S T +++L+A              H  ++E G        N   S+ A  G
Sbjct: 325 LRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCG 384

Query: 456 ITPSL------DHYACMI----NLLGRSSDVDKAVDLIKSLPH------KPNSLIWSTLL 499
              +         + C +     +LG S D      ++ +  H       PN + +  +L
Sbjct: 385 FFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAIL 444

Query: 500 SVCAMKGDIKHGEMAARHLFEL------EPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           + C+    +  G    R +  L      + + +    ML +MY  CG    +A      K
Sbjct: 445 NACSNSEALDFG----RKIHSLILTRRRDYVESSVATMLVSMYGKCG---SIAEAELVFK 497

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
              +   +  +W   +  +  +   DR+        E    L++ LQ          VL 
Sbjct: 498 EMPLPSRSLVTW---NVMLGAYAQNDRSK-------EAFGALMEMLQGG--------VLP 539

Query: 614 DTQEEEKVKSICYHS-EKLALAYCLIKKPH 642
           D      V S CY S E   L  C+++  +
Sbjct: 540 DALSFTSVLSSCYCSQEAQVLRMCILESGY 569



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 31/225 (13%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N LL+ Y+  G    A   F+ M  RD++SWN + +A+A++                 
Sbjct: 675 VENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA----------------- 717

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                         G ++EA+ +F  MQ +  +P   T  + LN       +  GK  HG
Sbjct: 718 --------------GLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHG 763

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                 L  +V V   L  +YAK G++D+A  LF       +V  N +I    ++G  ++
Sbjct: 764 LAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEE 823

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            + +F +MQ  G+ PD  T+ +I+ AC   G +++    F  +KE
Sbjct: 824 AVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKE 868



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 143/349 (40%), Gaps = 82/349 (23%)

Query: 315 LSEDVRPDKFS----ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           LS  VR D+ +     ++++ SC     L  G+  H      G++  L + + LI+MY +
Sbjct: 13  LSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVR 72

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK-LLQENLKPDSFTFVS 429
           CG  ++A  +F+ M  RNVVSW ++I+  AQ+G    A AL+   LL+ +  P+S+T V+
Sbjct: 73  CGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVA 132

Query: 430 VLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           +L+AC           +HA ++E G     + + + G          MIN+  +    + 
Sbjct: 133 MLNACANSRDLAIGRSIHAMIWELGLERESTTATLVG--------NAMINMYAKCGSPED 184

Query: 479 AVDLIKSLPHK-----------------------------------PNSLIWSTLLSVCA 503
           A+ +  ++P K                                   PN + + T L  C 
Sbjct: 185 AIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 504 MKGDIKHGEMAARHLFE----LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
               ++ G      L E     +P+     I   NMY  CG WE    +  +M S+  ++
Sbjct: 245 ---SLRDGTWLHSLLHEAGLGFDPLAGNALI---NMYGKCGDWEGAYGVFKAMASR--QE 296

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
               SW    N +     E   H +   I+       ++L+  G  PN+
Sbjct: 297 LDLVSW----NAMISASVEAGRHGDAMAIF-------RRLRLEGMRPNS 334


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/537 (40%), Positives = 320/537 (59%), Gaps = 50/537 (9%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYAK G++D+AR +FD M  RN+VSW  +ISGY ++G+  +C  LF +M L+   P+E  
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDM-LVDCYPNEFA 59

Query: 260 VSNILGAC------------FQTGRI-------------------------DDAGRLFHV 282
            ++++ +C             + G I                          +A R+F  
Sbjct: 60  FASVIISCDYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRVFES 119

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           ++ ++ V W +MI        EE+AL+LF ++  E + PD  + S V+ +CA   +  H 
Sbjct: 120 MEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTERHA 173

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             V+ + V  G +DD ++++ LI  Y +CG    +  VF+ M +R+VVSWNSMI  YA +
Sbjct: 174 LAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALH 233

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           GQ  EAL L+ ++   N++PDS T V++LSAC HA L E G N FDS+S  HG++P LDH
Sbjct: 234 GQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDH 290

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           YACM+++LGR+  + +A +LI  +P KP+S++WS LLS C   G+ +  ++AA  L ELE
Sbjct: 291 YACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKELE 350

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N+  Y+ +SN+Y + G + +   IR  M    V+K    SWIEI+N+VH+F S  R H
Sbjct: 351 PGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFASGGRRH 410

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+ E IY +L  LI +L+  G+ P T L L D +EE K + + +HSEKLAL + L+ +  
Sbjct: 411 PQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFALMSEGS 470

Query: 643 ---GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              G   IRI+KNIR+C DCH FMK ASD++ + I++RDSNRFHHF    CSC D W
Sbjct: 471 LCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCNDYW 527



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 180/375 (48%), Gaps = 60/375 (16%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +A+ G +   R +FD+M  R+ VS+   I+G+A  G S E   +FS M  D + P ++  
Sbjct: 2   YAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDMLVDCY-PNEFAF 60

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG------GEIDKARWL 213
            S + +C    D   GKQ+H   +   L  +V+V NAL   Y+K       G   +A  +
Sbjct: 61  ASVIISC----DYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEACRV 116

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F+ M  RNLVSWN MI+        ++ + LF+++   GL PD  T S +L AC      
Sbjct: 117 FESMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFVTE 170

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G I  + ++F  ++ +D V W +MI  Y
Sbjct: 171 RHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAY 230

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDD 357
             +G+ ++AL LF+EM   +VRPD  ++ +++S+C+    +  G  +    ++  GV   
Sbjct: 231 ALHGQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQ 287

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLL 416
           L   + ++D+  + G+  +A  + + MP + + V W+++++   + G+   A    DKL 
Sbjct: 288 LDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKL- 346

Query: 417 QENLKP-DSFTFVSV 430
            + L+P +S  +V +
Sbjct: 347 -KELEPGNSLGYVQI 360



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 170/384 (44%), Gaps = 73/384 (19%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           YAK G L  AR +FD+M  R+++SW AL+S                              
Sbjct: 2   YAKCGDLDRARQVFDEMGRRNVVSWTALIS------------------------------ 31

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
            G+A  G S E   +FS M  D + P ++   S + +C    D   GKQ+H   +   L 
Sbjct: 32  -GYAQHGRSYECFSLFSDMLVDCY-PNEFAFASVIISC----DYVCGKQVHALALKMGLI 85

Query: 189 GNVFVRNALTDMYAKG------GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +V+V NAL   Y+K       G   +A  +F+ M  RNLVSWN MI+        ++ +
Sbjct: 86  ASVYVGNALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSMIAA------EEEAL 139

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC--FQTGRIDDAGRLFHVIK---EKDNVCWTTMIVG 297
            LF+++   GL PD  T S +L AC  F T R         V+K   E D V   T+I  
Sbjct: 140 LLFRQLYREGLAPDWCTFSIVLKACAGFVTER-HALAVYSQVVKAGFEDDRVLANTLIHA 198

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV--LGVD 355
           Y + G    +  +F++M S DV     S +S++ + A      HGQ      +   + V 
Sbjct: 199 YARCGSISFSKQVFDKMRSRDV----VSWNSMIKAYA-----LHGQAKEALHLFSEMNVR 249

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMINGYAQNGQDLEALA 410
            D     AL+      G+ ++   +F+ M   + VS     +  M++   + G  LEA  
Sbjct: 250 PDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGE 309

Query: 411 LYDKLLQENLKPDSFTFVSVLSAC 434
           L  ++    +KPDS  + ++LS+C
Sbjct: 310 LISRM---PMKPDSVVWSALLSSC 330



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 157/342 (45%), Gaps = 33/342 (9%)

Query: 94  NALLSAHARS------GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           NAL++ +++S      G   +   +F+ M  R+ VS+N+ IA         EAL +F ++
Sbjct: 92  NALITRYSKSCEDNFVGYGSEACRVFESMEFRNLVSWNSMIAA------EEEALLLFRQL 145

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            ++   P   T    L ACA  +  R    ++ ++V      +  + N L   YA+ G I
Sbjct: 146 YREGLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSI 205

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             ++ +FD+M +R++VSWN MI  Y  +GQ K+ + LF EM    + PD  T+  +L AC
Sbjct: 206 SFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMN---VRPDSATMVALLSAC 262

Query: 268 FQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
              G +++   +F  +     V      +  M+    + G   +A  L + M    ++PD
Sbjct: 263 SHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELISRM---PMKPD 319

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
               S+++SSC K       ++   K   L   + L     + ++YC  G  ++A  + +
Sbjct: 320 SVVWSALLSSCRKYGETQLAKLAADKLKELEPGNSLGYVQ-ISNIYCSGGSYNEAGLIRD 378

Query: 383 MMPTRNV-----VSW---NSMINGYAQNG-QDLEALALYDKL 415
            M    V     +SW    + ++ +A  G +  +  A+Y KL
Sbjct: 379 EMNGSRVRKEPGLSWIEIENRVHEFASGGRRHPQREAIYAKL 420



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           L N L+H YA+ G + +++ +FDKM  RD++SWN+++ A+A  G  ++   LF +M +R 
Sbjct: 191 LANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMNVRP 250

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRM 147
           DS +    ++  ++ G   E + +F  M
Sbjct: 251 DSATMVALLSACSHAGLVEEGINIFDSM 278



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 12/195 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D +  N L+ A+AR GS+   + +FDKM  RD VS+N+ I  +A  G ++EAL +FS M 
Sbjct: 188 DRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMN 247

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEI 207
                P   T V+ L+AC+    +  G  I   + + + +   +     + D+  + G +
Sbjct: 248 ---VRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLL 304

Query: 208 DKARWLFDRMNNR-NLVSWNLMISGYLKNGQ---PKKCIDLFQEMQLLGLNPDEVTVSNI 263
            +A  L  RM  + + V W+ ++S   K G+    K   D  +E++  G +   V +SNI
Sbjct: 305 LEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADKLKELE-PGNSLGYVQISNI 363

Query: 264 L---GACFQTGRIDD 275
               G+  + G I D
Sbjct: 364 YCSGGSYNEAGLIRD 378


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/635 (33%), Positives = 359/635 (56%), Gaps = 37/635 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            NAL+S +A+S  + D   +F++MP +D++S+N+ I+G ++ G + EA+++F RM     E
Sbjct: 456  NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQE 515

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T +S L ACAQ      G+ +HG  V   L G   + NAL DMY+   +      +
Sbjct: 516  LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQI 575

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-----CF 268
            F  M  +N+VSW  MI+ Y++ G   K   L QEM L G+ PD   V++ L A       
Sbjct: 576  FRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESL 635

Query: 269  QTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
            + G+                              +++A  +F  +  KD + W T+I GY
Sbjct: 636  KQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGY 695

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++N    ++  LF++ML +  RP+  +++ ++ + A ++SL  G+ +H  A+  G  +D 
Sbjct: 696  SRNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDS 754

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              S+AL+DMY KCG    A  +F+ +  +N++SW  MI GY  +G    A+AL++++   
Sbjct: 755  YASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGS 814

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             ++PD+ +F ++L AC H+ L   G+  F ++   + I P L HY C+++LL R+ D+ +
Sbjct: 815  GIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKE 874

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A++ I+S+P +P+S IW +LL  C +  ++K  E  A  +F+LEP N G Y++L+N+YA 
Sbjct: 875  ALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAE 934

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              RWE V  +++ +  + +++   YSWIE+ +KVH F++++R HP+   I E L  + ++
Sbjct: 935  AERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARR 994

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            +++ G  P  K  L    +    +++C HS KLA+A+ ++  P G  PIR+ KN +VC  
Sbjct: 995  MRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEG-RPIRVTKNSKVCSH 1053

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
            CH   KF S +  R IILRDS+RFH F GG CSC+
Sbjct: 1054 CHEAAKFISKMCNREIILRDSSRFHRFEGGRCSCR 1088



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 145/510 (28%), Positives = 221/510 (43%), Gaps = 96/510 (18%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT---TFLHNRLLHFYAKSGKLFYARD 80
            +Y  +V  C     +E AKR  + +  +         + L  RL+  Y K G L  AR 
Sbjct: 98  RSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEART 157

Query: 81  LFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
           +FD MP +  D+  W +L+SA+A++G  Q                               
Sbjct: 158 VFDGMPPQAADVRVWTSLMSAYAKAGDFQ------------------------------- 186

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           EA+ +F +MQ     P  +     L   + L  L  G+ IHG +    LG    V NAL 
Sbjct: 187 EAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALI 246

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
            +Y++ G ++ A  +FD M+ R+ +SWN MI G   NG     +DLF +M   G     V
Sbjct: 247 AVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSV 306

Query: 259 TVSNILGACFQTGR--------------------------IDDAG--------------- 277
           TV ++L AC   G                           IDDA                
Sbjct: 307 TVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDM 366

Query: 278 ----RLFHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
               R+F  +  K NV  W  ++ GY + G+ E++L LF +M    + PD+ +IS ++  
Sbjct: 367 ASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKC 426

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
              L+    G V HG  V LG      V +ALI  Y K  +  DA  VFN MP ++ +SW
Sbjct: 427 ITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISW 486

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NS+I+G + NG + EA+ L+ ++  +  + DS T +SVL AC  +  +  G+        
Sbjct: 487 NSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGR-------V 539

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           VHG       Y+    L+G +S  +  +D+
Sbjct: 540 VHG-------YSVKTGLIGETSLANALLDM 562



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 137/489 (28%), Positives = 231/489 (47%), Gaps = 58/489 (11%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           QAA    +T L+    +  D + A  L   M      P+   + + +L   +  G L   
Sbjct: 165 QAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAV-SCVLKCVSSLGSLTEG 223

Query: 79  R---DLFDKMPLRDIIS-WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
                L +K+ L    +  NAL++ ++R G ++D   +FD M  RD++S+N+ I G  + 
Sbjct: 224 EVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSN 283

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNLGGNVFV 193
           G+   A+ +FS+M     E +  T +S L ACA L     GK +HG  +  G L G   V
Sbjct: 284 GWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSV 343

Query: 194 RNALTD---------MYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCID 243
           ++ + D         MY K G++  AR +FD M+++ N+  WNL++ GY K G+ ++ + 
Sbjct: 344 QSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLS 403

Query: 244 LFQEMQLLGLNPDEVTVSNILG--ACFQTGR----------------------------- 272
           LF +M  LG+ PDE  +S +L    C    R                             
Sbjct: 404 LFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYA 463

Query: 273 ----IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
               I DA  +F+ +  +D + W ++I G + NG   +A+ LF  M ++    D  ++ S
Sbjct: 464 KSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLS 523

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+ +CA+    + G+VVHG +V  G+  +  +++AL+DMY  C        +F  M  +N
Sbjct: 524 VLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQKN 583

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           VVSW +MI  Y + G   +   L  +++ + ++PD F   S L A    +  ++G++   
Sbjct: 584 VVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKS--- 640

Query: 449 SISAVHGIT 457
               VHG T
Sbjct: 641 ----VHGYT 645



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 148/525 (28%), Positives = 242/525 (46%), Gaps = 61/525 (11%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L  + +H Y+    L +  D      + D    + L+  + + G +   R +FD M  + 
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQS-GIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKG 380

Query: 121 SVS-YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-GKQI 178
           +V  +N  + G+A  G   E+L +F +M +    P ++  +S L  C   L   R G   
Sbjct: 381 NVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHA-ISCLLKCITCLSCARDGLVA 439

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG IV    G    V NAL   YAK   I  A  +F+RM  ++ +SWN +ISG   NG  
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-----GRI-------------------- 273
            + I+LF  M   G   D VT+ ++L AC Q+     GR+                    
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANAL 559

Query: 274 ----------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                         ++F  + +K+ V WT MI  Y + G  +    L  EM+ + +RPD 
Sbjct: 560 LDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDV 619

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F+++S + + A   SL  G+ VHG  +  G++  L V++AL++MY KC   ++A  +F+ 
Sbjct: 620 FAVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDR 679

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALY-DKLLQENLKPDSFTFVSVLSACLHADLFER 442
           +  ++V+SWN++I GY++N    E+ +L+ D LLQ   +P++ T   +L A       ER
Sbjct: 680 VTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ--FRPNAVTMTCILPAAASISSLER 737

Query: 443 GQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G+    + +   G     D YA   ++++  +   +  A  L   L  K N + W+ +++
Sbjct: 738 GR-EIHAYALRRGFLE--DSYASNALVDMYVKCGALLVARVLFDRLTKK-NLISWTIMIA 793

Query: 501 VCAMKGDIKHGEMAARHLFE------LEPINAGPYIMLSNMYAAC 539
              M G  KH    A  LFE      +EP  A    +L   YA C
Sbjct: 794 GYGMHGFGKH----AIALFEQMRGSGIEPDAASFSAIL---YACC 831



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 182/399 (45%), Gaps = 66/399 (16%)

Query: 166 CAQLLDLRRGKQIHGKI----VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR- 220
           C +   L   K+ H  I         G    +   L   Y K G++ +AR +FD M  + 
Sbjct: 107 CGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQA 166

Query: 221 -NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-------------- 265
            ++  W  ++S Y K G  ++ + LF++MQ  G++PD   VS +L               
Sbjct: 167 ADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVI 226

Query: 266 -----------ACF----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                      AC           + GR++DA R+F  +  +D + W +MI G   NG  
Sbjct: 227 HGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWH 286

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV----VLGVD----- 355
             A+ LF++M S+       ++ SV+ +CA L     G+ VHG +V    + G+D     
Sbjct: 287 GTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSG 346

Query: 356 -DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYD 413
            DD  + S L+ MY KCG    A  VF+ M ++ NV  WN ++ GYA+ G+  E+L+L+ 
Sbjct: 347 IDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFV 406

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMI 467
           ++ +  + PD    +S L  C+      R     D + A HG    L   A       +I
Sbjct: 407 QMHELGIAPDEHA-ISCLLKCITCLSCAR-----DGLVA-HGYIVKLGFGAQCAVCNALI 459

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +   +S+ +  AV +   +P + +++ W++++S C+  G
Sbjct: 460 SFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGCSSNG 497



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 182/416 (43%), Gaps = 81/416 (19%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L N LL  Y+          +F  M  ++++SW A+++++ R+G       LFDK   
Sbjct: 553 TSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAG-------LFDK--- 602

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                    +AG            +   M  D   P  +   SAL+A A    L++GK +
Sbjct: 603 ---------VAG------------LLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSV 641

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG  +   +   + V NAL +MY K   +++AR +FDR+ N++++SWN +I GY +N  P
Sbjct: 642 HGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFP 701

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGA----------------CFQTGRIDD------- 275
            +   LF +M LL   P+ VT++ IL A                  + G ++D       
Sbjct: 702 NESFSLFSDM-LLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNAL 760

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A  LF  + +K+ + WT MI GY  +G  + A+ LF +M    + PD 
Sbjct: 761 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDA 820

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDA 377
            S S+++ +C      + G    G+     +  +  +       + ++D+  + G   +A
Sbjct: 821 ASFSAILYACC-----HSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEA 875

Query: 378 WTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
                 MP     S W S+++G   +     A  + DK+ +  L+P++  +  +L+
Sbjct: 876 LEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFK--LEPENTGYYVLLA 929



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 26/220 (11%)

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG-----KAVVLGV 354
           Q G    AL L       DVR    S   VV  C +  SL   +  H       A   G 
Sbjct: 78  QAGDLAGALRLLGSDGGVDVR----SYCMVVQLCGEERSLEAAKRAHALIRASSAAATGG 133

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR--NVVSWNSMINGYAQNGQDLEALALY 412
              +L    L+  Y KCG   +A TVF+ MP +  +V  W S+++ YA+ G   EA++L+
Sbjct: 134 KGSVL-GKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLF 192

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYAC-----M 466
            ++    + PD+     VL           G+        +HG+   L    AC     +
Sbjct: 193 RQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGE-------VIHGLLEKLGLGQACAVANAL 245

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I +  R   ++ A  +  S+ H  +++ W++++  C   G
Sbjct: 246 IAVYSRCGRMEDAARVFDSM-HPRDAISWNSMIGGCFSNG 284


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/648 (34%), Positives = 365/648 (56%), Gaps = 43/648 (6%)

Query: 5   HKLRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           H+   A+ T   + +RG           V  C  ++ ++ A+++     ++ ++ ++ F+
Sbjct: 93  HQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDS-FV 151

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            + L+H Y K  ++  A  +FD+M   D++SW+AL++A+AR G V + + LF +M   DS
Sbjct: 152 QSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEM--GDS 209

Query: 122 ------VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                 +S+N  IAGF + G   EA+ +F  M    FEP   T  S L A   L DL  G
Sbjct: 210 GVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMG 269

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             IHG ++   L  +  V +AL DMY K     +   +FD+M++ ++ S N  I G  +N
Sbjct: 270 ILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
           GQ +  + LF++++  G+                               E + V WT+MI
Sbjct: 330 GQVESSLRLFRQLKDQGM-------------------------------ELNVVSWTSMI 358

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
              +QNG++ +AL LF EM    V+P+  +I  ++ +C  +A+L HG+  H  ++  G+ 
Sbjct: 359 ACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIS 418

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V SALIDMY KCG    +   F+ +PT+N+V WN++I GYA +G+  EA+ ++D +
Sbjct: 419 TDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLM 478

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +   KPD  +F  VLSAC  + L E G  +F+S+S+ +GI   ++HYACM+ LL R+  
Sbjct: 479 QRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGK 538

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +++A  +I+ +P  P++ +W  LLS C +  ++  GE+AA  LFELEP N G YI+LSN+
Sbjct: 539 LEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNI 598

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YA+ G W +V  +R  MK+K ++K    SWIE+ NKVH  ++ D++HP+   I E L KL
Sbjct: 599 YASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKL 658

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
             ++++ G+ P    VL D +E++K + +C HSEKLA+ + L+  P G
Sbjct: 659 SMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPG 706



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/475 (23%), Positives = 181/475 (38%), Gaps = 113/475 (23%)

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +   +T ++ LN+      L + +Q H  I+   L  +  +   L   YA       A 
Sbjct: 11  LDSVQHTILNCLNSTTA--SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADAT 68

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            + D +   N+ S++ +I  + K  Q    +  F +M   GL PD   + + + AC    
Sbjct: 69  LVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLS 128

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           +  +I DA R+F  + E D V W+ ++ 
Sbjct: 129 ALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVA 188

Query: 297 GYTQNGKEEDALILFNEMLSEDVR-----------------------------------P 321
            Y + G  ++A  LF+EM    V+                                   P
Sbjct: 189 AYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEP 248

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +ISSV+ +   L  L  G ++HG  +  G+  D  VSSALIDMY KC  T +   VF
Sbjct: 249 DGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVF 308

Query: 382 NMMP-----------------------------------TRNVVSWNSMINGYAQNGQDL 406
           + M                                      NVVSW SMI   +QNG+D+
Sbjct: 309 DQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDM 368

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EAL L+ ++    +KP+S T   +L AC +      G+      S   GI+  +   + +
Sbjct: 369 EALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAA-HCFSLRRGISTDVYVGSAL 427

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           I++  +   +  +      +P K N + W+ +++  AM G  K     A  +F+L
Sbjct: 428 IDMYAKCGRIQASRICFDGIPTK-NLVCWNAVIAGYAMHGKAKE----AMEIFDL 477


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 335/605 (55%), Gaps = 38/605 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRF 152
           N LL A+ +   +QD   LFD+MP RD VS+ + +  +       + L +F  M   DR 
Sbjct: 41  NTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRL 100

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P  + + + L ACA L  LR GKQ+H + V+     +  V+++L DMYAK G    AR 
Sbjct: 101 QPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARS 160

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  +  VSW  M+SGY ++G                                    
Sbjct: 161 VFDSILVKTSVSWTAMLSGYARSGLK---------------------------------- 186

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVS 331
            D+A  LF     ++   WT +I G  Q+G   D   +F EM  E V   D   +SSVV 
Sbjct: 187 -DEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVG 245

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA LA L  G+ +HG  +  G +  L +S+AL+DMY KC     A  VFN M  R+VVS
Sbjct: 246 ACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVS 305

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+G+  EAL LYD+++   +KP+  TFV ++ AC HA L  +G+  F ++ 
Sbjct: 306 WTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMI 365

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             + I+PSL  + C ++LL RS  +++A DLIK++PHKP+   W+ LLS C   G+ + G
Sbjct: 366 EDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMG 425

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
              A  L  L       Y++LSN+YA  G+WE ++ +R  M    VK+   YS I++  +
Sbjct: 426 VRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKE 485

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
              F + +  HP  + I+  L +L  ++++ G+ P+T  VLHD +E+EK + + +HSE+ 
Sbjct: 486 SQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERW 545

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A+AY L+K   G T IRI+KN+R+CGDCH F+K  S I+ + II+RD+ R+HHF  G CS
Sbjct: 546 AVAYGLLKAVPG-TVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCS 604

Query: 692 CKDNW 696
           C D W
Sbjct: 605 CNDFW 609



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 168/314 (53%), Gaps = 10/314 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C  +  + L K++ +   L+ +  +   + + L+  YAK G    AR +FD +
Sbjct: 107 YATLLKACASLCSLRLGKQVHARFVLSPFVDDDV-VKSSLVDMYAKCGLPSIARSVFDSI 165

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
            ++  +SW A+LS +ARSG   +   LF + P+R+  S+   I+G    G+  +   +F 
Sbjct: 166 LVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFI 225

Query: 146 RMQKDRFEPTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M+++  +  D   +S++  ACA L  L  GKQIHG ++       +F+ NAL DMYAK 
Sbjct: 226 EMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKC 285

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            +I  AR +F+RM +R++VSW  +I G  ++G+ K+ +DL+ +M L  + P+EVT   ++
Sbjct: 286 SDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLI 345

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G +    +LF  + E   +      +T  +   +++G   +A  L   M     
Sbjct: 346 YACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPH--- 402

Query: 320 RPDKFSISSVVSSC 333
           +PD+ + ++++S+C
Sbjct: 403 KPDEPTWAALLSAC 416



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 47/299 (15%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GLN  +   + +L A  +   + DA  LF  + ++D+V W +++  Y Q       L +F
Sbjct: 32  GLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAKLPNKTLSIF 91

Query: 312 NEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           + M + D ++PD F  ++++ +CA L SL  G+ VH + V+    DD +V S+L+DMY K
Sbjct: 92  HYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAK 151

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-------- 422
           CG+   A +VF+ +  +  VSW +M++GYA++G   EA+ L+ +    NL          
Sbjct: 152 CGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGL 211

Query: 423 ------------------------DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
                                   D     SV+ AC +  +   G+        +HG+  
Sbjct: 212 VQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQ-------IHGLVI 264

Query: 459 SLDHYAC------MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
              + +C      ++++  + SD+  A ++   + H+ + + W++++   A  G  K  
Sbjct: 265 GSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHR-DVVSWTSIIVGAAQHGRAKEA 322



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 1/103 (0%)

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C K  +  + + +H + V  G++    + + L+D Y KC +  DA  +F+ MP R+ VSW
Sbjct: 12  CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSW 71

Query: 393 NSMINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSAC 434
            S++  Y Q     + L+++  +   + L+PD F + ++L AC
Sbjct: 72  ASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKAC 114


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 366/700 (52%), Gaps = 100/700 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRM--- 147
           NAL++ ++R GS+++   +FD++  R   D +S+N+ ++       +  AL +FS+M   
Sbjct: 194 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 253

Query: 148 --QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             +K   E +D    V+ L AC  L  + + K++HG  +      +VFV NAL D YAK 
Sbjct: 254 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC 313

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ--------------------------- 237
           G ++ A  +F+ M  +++VSWN M++GY ++G                            
Sbjct: 314 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 373

Query: 238 --------PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI---------------- 273
                     + ++LF++M   G  P+ VT+ ++L AC   G                  
Sbjct: 374 AGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 433

Query: 274 ---DDAG-------------------RLFHV---------IKEKDNVCWTTMIVGYTQNG 302
              +D G                   R F           ++E++ V WT MI G+ Q G
Sbjct: 434 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 493

Query: 303 KEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG----VDD 356
              DAL LF EM+SE   V P+ ++IS ++ +CA LA++  G+ +H  A VL        
Sbjct: 494 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHRYESS 551

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V++ LIDMY KCG  D A  VF+ M  ++ +SW SM+ GY  +G+  EAL ++DK+ 
Sbjct: 552 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 611

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +    PD  TF+ VL AC H  + ++G ++FDS+SA +G+TP  +HYAC I+LL RS  +
Sbjct: 612 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 671

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           DKA   +K +P +P +++W  LLS C +  +++  E A   L E+   N G Y ++SN+Y
Sbjct: 672 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 731

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  GRW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  L  LI
Sbjct: 732 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 791

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            +++  G+ P T   LHD  EEEK   +  HSEKLALAY L+    G  PIRI KN+RVC
Sbjct: 792 DRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGC-PIRITKNLRVC 850

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH    + S I+   I++RD +RFHHF  G+CSC   W
Sbjct: 851 GDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  195 bits (496), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 228/473 (48%), Gaps = 76/473 (16%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQD 108
           N +E N  F+ N L+  Y++ G L  A  +FD++  R   D+ISWN+++SAH +S +   
Sbjct: 184 NGFESNV-FICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 242

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
              LF KM                        L V  +   +R +     ++  L AC  
Sbjct: 243 ALDLFSKM-----------------------TLIVHEKPTNERSDIISIVNI--LPACGS 277

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  + + K++HG  +      +VFV NAL D YAK G ++ A  +F+ M  +++VSWN M
Sbjct: 278 LKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 337

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++GY ++G  +   +LF+ M+   +  D VT                             
Sbjct: 338 VAGYSQSGNFEAAFELFKNMRKENIPLDVVT----------------------------- 368

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
             WT +I GY+Q G   +AL LF +M+     P+  +I SV+S+CA L +   G  +H  
Sbjct: 369 --WTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 426

Query: 348 --KAVVL-------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMI 396
             K  +L       G D+DL+V +ALIDMY KC     A ++F+ +P   RNVV+W  MI
Sbjct: 427 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486

Query: 397 NGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
            G+AQ G   +AL L+ +++ E   + P+++T   +L AC H      G+     +   H
Sbjct: 487 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 546

Query: 455 GITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               S    A C+I++  +  DVD A  +  S+  K +++ W+++++   M G
Sbjct: 547 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 598



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 208/460 (45%), Gaps = 61/460 (13%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  V   K +  +   N   P+  F+ N L+  YAK G +  A  +F+ M  +D++S
Sbjct: 275 CGSLKAVPQTKEVHGNAIRNGTFPDV-FVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 333

Query: 93  WNALLSAHARSGSVQDLRALFDKM-----PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           WNA+++ +++SG+ +    LF  M     P+ D V++   IAG++ +G S EAL +F +M
Sbjct: 334 WNAMVAGYSQSGNFEAAFELFKNMRKENIPL-DVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK-------IVVGNLGG---NVFVRNAL 197
                 P   T +S L+ACA L    +G +IH          +  + GG   ++ V NAL
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 198 TDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGL 253
            DMY+K      AR +FD   +  RN+V+W +MI G+ + G     + LF EM  +  G+
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 254 NPDEVTVSNILGACF-------------------------------------QTGRIDDA 276
            P+  T+S IL AC                                      + G +D A
Sbjct: 513 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 572

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +F  + +K  + WT+M+ GY  +G+  +AL +F++M      PD  +   V+ +C+  
Sbjct: 573 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 632

Query: 337 ASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNS 394
             +  G       +   G+       +  ID+  + G  D AW     MP     V W +
Sbjct: 633 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 692

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSA 433
           +++    +     A    +KL++ N + D S+T +S + A
Sbjct: 693 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA 732



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 49/290 (16%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y   G  D A  + +R+     V WNL+I  ++K G+    I++   M   G  PD  T+
Sbjct: 99  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 158

Query: 261 SNILGAC--------------------FQT---------------GRIDDAGRLFHVIKE 285
            ++L AC                    F++               G +++A  +F  I +
Sbjct: 159 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 218

Query: 286 K---DNVCWTTMIVGYTQNGKEEDALILFNEML------SEDVRPDKFSISSVVSSCAKL 336
           +   D + W +++  + ++     AL LF++M         + R D  SI +++ +C  L
Sbjct: 219 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 278

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            ++   + VHG A+  G   D+ V +ALID Y KCG+ ++A  VFNMM  ++VVSWN+M+
Sbjct: 279 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 338

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            GY+Q+G    A  L+  + +EN+  D  T+ +V+     A   +RG +H
Sbjct: 339 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI-----AGYSQRGCSH 383



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 41/274 (14%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A      + +++ C  +  + + K++ ++ +  + YE +  F+ N L+  Y+K G + 
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 570

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            AR +FD M  +  ISW ++++                               G+   G 
Sbjct: 571 TARHVFDSMSQKSAISWTSMMT-------------------------------GYGMHGR 599

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRN 195
             EAL +F +M+K  F P D T +  L AC+    + +G      +     L        
Sbjct: 600 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 659

Query: 196 ALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLG 252
              D+ A+ G +DKA R + D       V W  ++S    +      ++L +    +L+ 
Sbjct: 660 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN----VELAEHALNKLVE 715

Query: 253 LNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKE 285
           +N +      ++   + T GR  D  R+ H++K+
Sbjct: 716 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 749



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + ++  Y  CG TD A  V   +     V WN +I  + + G+   A+ +  ++L+  
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 150

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            +PD FT   VL AC     +  G       SA HG+
Sbjct: 151 TRPDHFTLPHVLKACGELPSYRCG-------SAFHGL 180


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/637 (35%), Positives = 348/637 (54%), Gaps = 35/637 (5%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL++A++  GSV   R +F+ +  +D V +   ++ +   G+  ++L++ S M+   F P
Sbjct: 186 ALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMP 245

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            +YT  +AL A   L      K +HG+I+      +  V   L  +Y + G++  A  +F
Sbjct: 246 NNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVF 305

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------ 268
           + M   ++V W+ MI+ + +NG   + +DLF  M+   + P+E T+S+IL  C       
Sbjct: 306 NEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSG 365

Query: 269 -----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                        +  ++D A +LF  +  K+ V W T+IVGY 
Sbjct: 366 LGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYE 425

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
             G+   A  +F E L   V   + + SS + +CA LAS+  G  VHG A+       + 
Sbjct: 426 NLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVA 485

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           VS++LIDMY KCG    A +VFN M T +V SWN++I+GY+ +G   +AL + D +   +
Sbjct: 486 VSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRD 545

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
            KP+  TF+ VLS C +A L ++GQ  F+S+   HGI P L+HY CM+ LLGRS  +DKA
Sbjct: 546 CKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKA 605

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           + LI+ +P++P+ +IW  +LS    + + +    +A  + ++ P +   Y+++SNMYA  
Sbjct: 606 MKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGA 665

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
            +W +VASIR SMK   VKK    SWIE    VH F      HP+ ++I   L  L  K 
Sbjct: 666 KQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKA 725

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
             AG+ P+   VL D  +EEK K +  HSE+LALAY L++ P     I IMKN+R+C DC
Sbjct: 726 TRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDC 785

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  MK  S I+ R +++RD NRFHHF  G CSC D+W
Sbjct: 786 HSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 230/503 (45%), Gaps = 76/503 (15%)

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           D+  K    D+ + N LL+A+ ++G  +D   LFD+MP R++VS+ T   G+A     ++
Sbjct: 74  DILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQD 129

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
            + ++SR+ ++  E   +   S L     L        +H  IV      N FV  AL +
Sbjct: 130 PIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALIN 189

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
            Y+  G +D AR +F+ +  +++V W  ++S Y++NG  +  + L   M++ G  P+  T
Sbjct: 190 AYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYT 249

Query: 260 V--------------------SNILGACF---------------QTGRIDDAGRLFHVIK 284
                                  IL  C+               Q G + DA ++F+ + 
Sbjct: 250 FDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMP 309

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           + D V W+ MI  + QNG   +A+ LF  M    V P++F++SS+++ CA       G+ 
Sbjct: 310 KNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQ 369

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG  V +G D D+ VS+ALID+Y KC   D A  +F  + ++N VSWN++I GY   G+
Sbjct: 370 LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGE 429

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHY 463
             +A +++ + L+  +     TF S L AC      + G Q H  +I   +    ++ + 
Sbjct: 430 GGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSN- 488

Query: 464 ACMINLLGRSSDVDKA----------------------------------VDLIKSLPHK 489
             +I++  +  D+  A                                  +D++K    K
Sbjct: 489 -SLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCK 547

Query: 490 PNSLIWSTLLSVCAMKGDIKHGE 512
           PN L +  +LS C+  G I  G+
Sbjct: 548 PNGLTFLGVLSGCSNAGLIDQGQ 570



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 90/198 (45%), Gaps = 30/198 (15%)

Query: 316 SEDVRP--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           S+ + P  D  +  +++  C +       + +H   +  G   DL  ++ L++ Y K G 
Sbjct: 40  SDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGF 99

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--LKPDSFT----- 426
             DA  +F+ MP RN VS+ ++  GYA      + + LY +L +E   L P  FT     
Sbjct: 100 DKDALNLFDEMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKL 155

Query: 427 FVSV----LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           FVS+    +   LH+ + + G   +DS + V          A +IN       VD A  +
Sbjct: 156 FVSLDKAEICPWLHSPIVKLG---YDSNAFVG---------AALINAYSVCGSVDSARTV 203

Query: 483 IKSLPHKPNSLIWSTLLS 500
            + +  K + ++W+ ++S
Sbjct: 204 FEGILCK-DIVVWAGIVS 220


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 355/646 (54%), Gaps = 68/646 (10%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P R + S+  A+         REA+  +  M      P ++   + L A + L DL+ G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 177 QIHGKIV---------------------VGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           QIH   V                      G +G   F  NAL  MYAK G +D ++ LF+
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
              +R++VSWN MIS + ++ +  + +  F+ M L G+  D VT++++L AC    R+D 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLD- 231

Query: 276 AGRLFH--VIKEKDNV-----------------------------------CWTTMIVGY 298
            G+  H  V++  D +                                    W  MI GY
Sbjct: 232 VGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 299 TQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCA-KLASLYHGQVVHGKAVVLGVDD 356
            +NG +E ALILF EM+    + P+  +++SV+ +C   LA++  G+ +H  A+   +  
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLAS 351

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D+ V SAL+DMY KCG  + +  VFN MP +NV++WN +I     +G+  EAL L+  ++
Sbjct: 352 DITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMV 411

Query: 417 QE-----NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
            E       KP+  TF++V +AC H+ L   G N F  +   HG+ P+ DHYAC+++LLG
Sbjct: 412 AEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLG 471

Query: 472 RSSDVDKAVDLIKSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           R+  +++A +L+ ++P + + +  WS+LL  C +  +++ GE+AA++L  LEP  A  Y+
Sbjct: 472 RAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYV 531

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+Y++ G W     +R +M+   VKK    SWIE  ++VHKF++ D +HP++E ++ 
Sbjct: 532 LLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHG 591

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
            L  L +K+++ G+ P+T  VLH+  E+EK   +C HSEKLA+A+ ++  P G T IR+ 
Sbjct: 592 FLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTT-IRVA 650

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   KF S I+ R II+RD  RFHHF  G CSC D W
Sbjct: 651 KNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/450 (26%), Positives = 213/450 (47%), Gaps = 61/450 (13%)

Query: 7   LRQAIDT---LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
            R+AI T   +   G      A+  ++   + + D++  +++ +      Y  ++  + N
Sbjct: 73  FREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVAN 132

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L++ Y K G       + DK       + NAL++ +A+ G V D +ALF+    RD VS
Sbjct: 133 TLVNMYGKCG------GIGDK-----TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVS 181

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +NT I+ F+      EAL  F  M  +  E    T  S L AC+ L  L  GK+IH  ++
Sbjct: 182 WNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVL 241

Query: 184 VGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
             N L  N FV +AL DMY    +++  R +FD +  R +  WN MISGY +NG  +K +
Sbjct: 242 RNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKAL 301

Query: 243 DLFQEM-QLLGLNPDEVTVSNILGACFQT------------------------------- 270
            LF EM ++ GL P+  T+++++ AC  +                               
Sbjct: 302 ILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVD 361

Query: 271 -----GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-----DVR 320
                G ++ + R+F+ +  K+ + W  +I+    +GK E+AL LF  M++E     + +
Sbjct: 362 MYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAK 421

Query: 321 PDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           P++ +  +V ++C+    +  G  + +      GV+      + ++D+  + G  ++A+ 
Sbjct: 422 PNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYE 481

Query: 380 VFNMMPTR--NVVSWNSMINGYAQNGQDLE 407
           + N MP     V +W+S++ G  +  Q++E
Sbjct: 482 LVNTMPAEFDKVGAWSSLL-GACRIHQNVE 510


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/686 (33%), Positives = 371/686 (54%), Gaps = 60/686 (8%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LLH   ++G L  AR +   M       D+    +L++A+ R  + +D R LFD MP R+
Sbjct: 84  LLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERN 143

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++   + G+         L+VF  M +    P+ YT  + LNAC    D+  GKQ+HG
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +         + N+L  +YAK G +D A   F R+  +N+++W  MIS   ++   ++
Sbjct: 204 YAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED---EE 260

Query: 241 CIDL----FQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
           C++L    F +M + G+ P+E T+++++  C                             
Sbjct: 261 CVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKN 320

Query: 268 ------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---NGKEE--------DALIL 310
                  + G  D+A RLF  +++   + W  MI GY Q   + K++         AL +
Sbjct: 321 STMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTI 380

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F ++    ++PD F+ SS++S C+ + +L  G+ +H + +  G   D++V+SAL++MY K
Sbjct: 381 FRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNK 440

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG   DA   F  MPTR  V+W SMI+GY+Q+GQ  EA+ L++++    ++P+  TFVS+
Sbjct: 441 CGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSL 500

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           LSAC +A L E  +++FD +   + I P +DHY CMI++  R   V+ A   IK    +P
Sbjct: 501 LSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEP 560

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           N  IWS+L++ C   G+++    AA  L EL+P     YI+L NMY +  RW+DVA +R 
Sbjct: 561 NEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRK 620

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            MK ++V      SWI I +KV+ F + DRTHP+   +Y+ L  L++K +  G+ P    
Sbjct: 621 LMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNA 680

Query: 611 VLHDTQEEEK--VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASD 668
            L D++++EK    S+ +HSE+LA+A  L++ P G T +R+ KNI +C DCH  +K  S 
Sbjct: 681 ELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGAT-VRVTKNITMCRDCHSSIKLFSL 739

Query: 669 IIGRTIILRDSNRFHHFVGGNCSCKD 694
           +  R II+RDS R H F  G CSC D
Sbjct: 740 LENREIIVRDSKRLHKFKDGRCSCGD 765



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E   T ++  C    D+ L K++Q+       E N   + N  ++ Y + G+   
Sbjct: 276 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLP-VKNSTMYLYLRKGETDE 334

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  LF++M    II+WNA++S +A     Q + +  D +  R             ++GF 
Sbjct: 335 AMRLFEQMEDASIITWNAMISGYA-----QIMDSAKDDLQAR-------------SRGF- 375

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +AL +F  +++   +P  +T  S L+ C+ ++ L +G+QIH + +      +V V +AL
Sbjct: 376 -QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 434

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MY K G I  A   F  M  R  V+W  MISGY ++GQP++ I LF+EM+L G+ P+E
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFN 312
           +T  ++L AC   G +++A   F ++K++  +      +  MI  + + G+ EDA   F+
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FS 551

Query: 313 EMLSEDVRPDKFSISSVVSSC 333
            +      P++   SS+V+ C
Sbjct: 552 FIKRTGFEPNEAIWSSLVAGC 572


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 345/600 (57%), Gaps = 42/600 (7%)

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
           A+A  G ++   ALF +    D   +  AI   +  G   +A  ++ ++   +  P ++T
Sbjct: 71  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFT 130

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
             S L +C+     + GK IH  ++   LG + +V   L D+YAKGG++  A+ +FDRM 
Sbjct: 131 FSSILKSCST----KSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMP 186

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            R+LVS   MI+ Y K G                                    ++ A  
Sbjct: 187 ERSLVSSTAMITCYAKQGN-----------------------------------VEAARA 211

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLA 337
           LF  + E+D V W  MI GY+Q+G   DAL+LF ++L++   +PD+ ++ + +S+C+++ 
Sbjct: 212 LFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIG 271

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ +H       +  ++ V +ALIDMY KCG  ++A  VFN  P +++V+WN+MI 
Sbjct: 272 ALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIT 331

Query: 398 GYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           GYA +G   +AL L+D++     L+P   TF+  L AC HA L   G   F+S+   +GI
Sbjct: 332 GYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P ++HY C+++LLGR+  + +A ++IK++  + +S++WS++L  C + G+   G+  A 
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAE 451

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           +L      N+G Y++LSN+YA  G +E VA +R+ MK K + K    S IEIDNKVH+F 
Sbjct: 452 YLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFR 511

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + DR H +++ IY  L K+ ++++  G+ PNT  VLHD +E EK +S+  HSE+LA+AY 
Sbjct: 512 AGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYG 571

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           LI    G +P++I KN+RVC DCH   K  S I GR I++RD NRFHHF  G+CSC D W
Sbjct: 572 LISTKPG-SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 185/345 (53%), Gaps = 25/345 (7%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++   L+  YAK G +  A+ +FD+MP R ++S  A+++ +A+ G+V+  RALFD+M  R
Sbjct: 160 YVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCER 219

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQI 178
           D VS+N  I G++  GF  +AL +F ++  D + +P + T V+AL+AC+Q+  L  G+ I
Sbjct: 220 DIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWI 279

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +    +  NV V  AL DMY+K G +++A  +F+    +++V+WN MI+GY  +G  
Sbjct: 280 HVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYS 339

Query: 239 KKCIDLFQEMQ-LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-------- 289
           +  + LF EMQ + GL P ++T    L AC   G +++  ++F  + ++  +        
Sbjct: 340 QDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYG 399

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           C  +++    + G+ + A  +   M   ++  D    SSV+ SC       HG+ + GK 
Sbjct: 400 CLVSLL---GRAGQLKRAYEIIKNM---NMEADSVLWSSVLGSCK-----LHGEFMLGKE 448

Query: 350 VVLGVDDDLLVSSA----LIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +   +    + +S     L ++Y   G  +    V N+M  + +V
Sbjct: 449 IAEYLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIV 493



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 173/436 (39%), Gaps = 107/436 (24%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P    L+ +L   YA  GK+ ++  LF +    D+  + A +                  
Sbjct: 59  PRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAI------------------ 100

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                    NTA    +  G   +A  ++ ++   +  P ++T  S L +C+     + G
Sbjct: 101 ---------NTA----SINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCST----KSG 143

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGE----------------------------- 206
           K IH  ++   LG + +V   L D+YAKGG+                             
Sbjct: 144 KLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQ 203

Query: 207 --IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNI 263
             ++ AR LFDRM  R++VSWN+MI GY ++G P   + LFQ++   G   PDE+TV   
Sbjct: 204 GNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAA 263

Query: 264 LGACFQTGRIDDAGRLFHVI------------------------------------KEKD 287
           L AC Q G + + GR  HV                                       KD
Sbjct: 264 LSACSQIGAL-ETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKD 322

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHG-QVV 345
            V W  MI GY  +G  +DAL LF+EM     ++P   +    + +CA    +  G Q+ 
Sbjct: 323 IVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIF 382

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQ 404
                  G+   +     L+ +  + G    A+ +  NM    + V W+S++     +G+
Sbjct: 383 ESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGE 442

Query: 405 DLEALALYDKLLQENL 420
            +    + + L+ +N+
Sbjct: 443 FMLGKEIAEYLIGQNI 458


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 244/700 (34%), Positives = 366/700 (52%), Gaps = 100/700 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRM--- 147
           NAL++ ++R GS+++   +FD++  R   D +S+N+ ++       +  AL +FS+M   
Sbjct: 201 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 260

Query: 148 --QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             +K   E +D    V+ L AC  L  + + K++HG  +      +VFV NAL D YAK 
Sbjct: 261 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKC 320

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ--------------------------- 237
           G ++ A  +F+ M  +++VSWN M++GY ++G                            
Sbjct: 321 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 380

Query: 238 --------PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI---------------- 273
                     + ++LF++M   G  P+ VT+ ++L AC   G                  
Sbjct: 381 AGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 440

Query: 274 ---DDAG-------------------RLFHV---------IKEKDNVCWTTMIVGYTQNG 302
              +D G                   R F           ++E++ V WT MI G+ Q G
Sbjct: 441 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 500

Query: 303 KEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG----VDD 356
              DAL LF EM+SE   V P+ ++IS ++ +CA LA++  G+ +H  A VL        
Sbjct: 501 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIH--AYVLRHHRYESS 558

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
              V++ LIDMY KCG  D A  VF+ M  ++ +SW SM+ GY  +G+  EAL ++DK+ 
Sbjct: 559 AYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMR 618

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +    PD  TF+ VL AC H  + ++G ++FDS+SA +G+TP  +HYAC I+LL RS  +
Sbjct: 619 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 678

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           DKA   +K +P +P +++W  LLS C +  +++  E A   L E+   N G Y ++SN+Y
Sbjct: 679 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIY 738

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  GRW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  L  LI
Sbjct: 739 ATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLI 798

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            +++  G+ P T   LHD  EEEK   +  HSEKLALAY L+    G  PIRI KN+RVC
Sbjct: 799 DRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPG-CPIRITKNLRVC 857

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH    + S I+   I++RD +RFHHF  G+CSC   W
Sbjct: 858 GDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 140/473 (29%), Positives = 228/473 (48%), Gaps = 76/473 (16%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQD 108
           N +E N  F+ N L+  Y++ G L  A  +FD++  R   D+ISWN+++SAH +S +   
Sbjct: 191 NGFESNV-FICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 249

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
              LF KM                        L V  +   +R +     ++  L AC  
Sbjct: 250 ALDLFSKM-----------------------TLIVHEKPTNERSDIISIVNI--LPACGS 284

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  + + K++HG  +      +VFV NAL D YAK G ++ A  +F+ M  +++VSWN M
Sbjct: 285 LKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 344

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++GY ++G  +   +LF+ M+   +  D VT                             
Sbjct: 345 VAGYSQSGNFEAAFELFKNMRKENIPLDVVT----------------------------- 375

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
             WT +I GY+Q G   +AL LF +M+     P+  +I SV+S+CA L +   G  +H  
Sbjct: 376 --WTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAY 433

Query: 348 --KAVVL-------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMI 396
             K  +L       G D+DL+V +ALIDMY KC     A ++F+ +P   RNVV+W  MI
Sbjct: 434 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493

Query: 397 NGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
            G+AQ G   +AL L+ +++ E   + P+++T   +L AC H      G+     +   H
Sbjct: 494 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 553

Query: 455 GITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               S    A C+I++  +  DVD A  +  S+  K +++ W+++++   M G
Sbjct: 554 RYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 605



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 208/460 (45%), Gaps = 61/460 (13%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  V   K +  +   N   P+  F+ N L+  YAK G +  A  +F+ M  +D++S
Sbjct: 282 CGSLKAVPQTKEVHGNAIRNGTFPDV-FVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 340

Query: 93  WNALLSAHARSGSVQDLRALFDKM-----PIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           WNA+++ +++SG+ +    LF  M     P+ D V++   IAG++ +G S EAL +F +M
Sbjct: 341 WNAMVAGYSQSGNFEAAFELFKNMRKENIPL-DVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK-------IVVGNLGG---NVFVRNAL 197
                 P   T +S L+ACA L    +G +IH          +  + GG   ++ V NAL
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 198 TDMYAKGGEIDKARWLFD--RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGL 253
            DMY+K      AR +FD   +  RN+V+W +MI G+ + G     + LF EM  +  G+
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 254 NPDEVTVSNILGACF-------------------------------------QTGRIDDA 276
            P+  T+S IL AC                                      + G +D A
Sbjct: 520 APNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTA 579

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +F  + +K  + WT+M+ GY  +G+  +AL +F++M      PD  +   V+ +C+  
Sbjct: 580 RHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC 639

Query: 337 ASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNS 394
             +  G       +   G+       +  ID+  + G  D AW     MP     V W +
Sbjct: 640 GMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVA 699

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSA 433
           +++    +     A    +KL++ N + D S+T +S + A
Sbjct: 700 LLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYA 739



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 49/290 (16%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y   G  D A  + +R+     V WNL+I  ++K G+    I++   M   G  PD  T+
Sbjct: 106 YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 165

Query: 261 SNILGAC--------------------FQT---------------GRIDDAGRLFHVIKE 285
            ++L AC                    F++               G +++A  +F  I +
Sbjct: 166 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 225

Query: 286 K---DNVCWTTMIVGYTQNGKEEDALILFNEML------SEDVRPDKFSISSVVSSCAKL 336
           +   D + W +++  + ++     AL LF++M         + R D  SI +++ +C  L
Sbjct: 226 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 285

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            ++   + VHG A+  G   D+ V +ALID Y KCG+ ++A  VFNMM  ++VVSWN+M+
Sbjct: 286 KAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 345

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            GY+Q+G    A  L+  + +EN+  D  T+ +V+     A   +RG +H
Sbjct: 346 AGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI-----AGYSQRGCSH 390



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/274 (21%), Positives = 112/274 (40%), Gaps = 41/274 (14%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A      + +++ C  +  + + K++ ++ +  + YE +  F+ N L+  Y+K G + 
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVD 577

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            AR +FD M  +  ISW ++++                               G+   G 
Sbjct: 578 TARHVFDSMSQKSAISWTSMMT-------------------------------GYGMHGR 606

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRN 195
             EAL +F +M+K  F P D T +  L AC+    + +G      +     L        
Sbjct: 607 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 666

Query: 196 ALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLG 252
              D+ A+ G +DKA R + D       V W  ++S    +      ++L +    +L+ 
Sbjct: 667 CAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSN----VELAEHALNKLVE 722

Query: 253 LNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKE 285
           +N +      ++   + T GR  D  R+ H++K+
Sbjct: 723 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 756



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 7/97 (7%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + ++  Y  CG TD A  V   +     V WN +I  + + G+   A+ +  ++L+  
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 157

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            +PD FT   VL AC     +  G       SA HG+
Sbjct: 158 TRPDHFTLPHVLKACGELPSYRCG-------SAFHGL 187


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 343/588 (58%), Gaps = 8/588 (1%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLL 170
           LF   P  D   +NT I G       +++L  F  M+++ F P D ++    + A A L 
Sbjct: 61  LFRYTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLR 120

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            +R G Q+H + +V  L  ++FV   L  MY + G +  AR +FD M   N ++WN M++
Sbjct: 121 SVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVT 180

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
              + G  K   +LF  M +  L    ++ + +L    + G ++ A  +F  +  KD+V 
Sbjct: 181 ACCRGGDMKGGRELFDLMPVRNL----MSWNVMLAGYTKAGELELAREMFLEMPMKDDVS 236

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+TMIVG+  NG  E+A   F E+  + +RP++ S++ V+S+CA+  +L  G+++HG   
Sbjct: 237 WSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIE 296

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-MMPTRNVVSWNSMINGYAQNGQDLEAL 409
             G+   + V++AL+D Y KCG    A  VF  +M  RN+VSW SM+   A +G   EA+
Sbjct: 297 KSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAI 356

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            ++ K+ +  ++PD   F+S+L AC HA L E+G  +FD +  ++ I PS++HY CM++L
Sbjct: 357 GIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDL 416

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
            GR+  + KA + +  +P    ++IW TLL  C+M GD+K  E     L EL+P N+  +
Sbjct: 417 YGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDH 476

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LSN YA  G+W+D AS+R SM  + + K   +S IE+D  ++ F++  + +  TE  Y
Sbjct: 477 VLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAY 536

Query: 590 EELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           ++L ++I++L+ E G+ P    VLHD +EEEK  S+  HSEKLA+A+ + +   G T IR
Sbjct: 537 KKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRT-IR 595

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I+KN+R+C DCH  MK  S I    I++RD +RFH F  G CSC+D W
Sbjct: 596 IVKNLRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 82/236 (34%), Positives = 134/236 (56%), Gaps = 2/236 (0%)

Query: 55  EPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           EPN     N ++    + G +   R+LFD MP+R+++SWN +L+ + ++G ++  R +F 
Sbjct: 169 EPNA-IAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFL 227

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           +MP++D VS++T I GFA+ G+  EA   F  +Q+    P + +    L+ACAQ   L  
Sbjct: 228 EMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEF 287

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR-MNNRNLVSWNLMISGYL 233
           GK +HG I    L   V V NAL D Y+K G +  A+ +F+R MN RN+VSW  M++   
Sbjct: 288 GKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALA 347

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
            +G  ++ I +F +M+  G+ PDE+   ++L AC   G ++     F  +K   N+
Sbjct: 348 MHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNI 403



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 148/354 (41%), Gaps = 71/354 (20%)

Query: 251 LGLNPDEVTVSNILGACF--QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
           LGL  D      +L  C    +  +D A RLF      D     T+I G  ++ + +D+L
Sbjct: 31  LGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRGLYESDRPQDSL 90

Query: 309 ILFNEMLSEDVR-PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           + F EM       PD FS + +V + A L S+  G  +H +A+V G+D  L V + LI M
Sbjct: 91  LKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISM 150

Query: 368 YCKCG-------VTDD-------AWT-----------------VFNMMPTRNVVSWNSMI 396
           Y +CG       V D+       AW                  +F++MP RN++SWN M+
Sbjct: 151 YGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVML 210

Query: 397 NGY-------------------------------AQNGQDLEALALYDKLLQENLKPDSF 425
            GY                               A NG   EA + + +L ++ ++P+  
Sbjct: 211 AGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNET 270

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           +   VLSAC  A   E G+     I    G+   +     +++   +  +V  A  + + 
Sbjct: 271 SLTGVLSACAQAGALEFGKILHGFIEK-SGLAWIVSVNNALLDTYSKCGNVLMAQLVFER 329

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR--HLFELEPINAGPYIMLSNMYA 537
           + ++ N + W+++++  AM G   HGE A    H  E   I       +S +YA
Sbjct: 330 IMNERNIVSWTSMMAALAMHG---HGEEAIGIFHKMEESGIRPDEIAFISLLYA 380


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 339/606 (55%), Gaps = 47/606 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L  A+A SG +    AL  +     ++ Y +AI   +++G    AL + S M      PT
Sbjct: 329 LQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPT 388

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T  ++L AC     L  G+ +HG      L G+ +V  AL  MYA+ G+   AR LFD
Sbjct: 389 AHTLSASLPACR---GLSPGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFD 445

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M                                    +P  V+V+ +L      G +DD
Sbjct: 446 DMLP----------------------------------DPHVVSVTAMLTCYADMGALDD 471

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  KD VCW  MI GYTQ+G+  +AL LF  ML   V PD+ ++  V+S+ A+
Sbjct: 472 ARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQ 531

Query: 336 LASLYHGQVVHG-----KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           L ++  G+ +H      + V L V     V +ALIDMYCKCG   DA  VF+ +  +++V
Sbjct: 532 LGTVESGKWLHSYVKNSRRVQLSVR----VGTALIDMYCKCGSLGDAVDVFHGIGDKDIV 587

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
            WN+MINGYA +G   +AL ++ +  ++ L P   TF+ +L+AC H+ + E G+  F S+
Sbjct: 588 VWNAMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSM 647

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              +GI P ++HY CM++LLGR+  + +A  L++S+   P++++W +LL+ C +  ++  
Sbjct: 648 EREYGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSL 707

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           G+  A +L      N+G YI+LSN+YAA G W +VA +RS MK+  ++K    S IEID 
Sbjct: 708 GQQIADYLVAKGLANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDR 767

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           +V++FV+ D +HP T+ IY  L K+   ++E G  P T+LVLHD  E  K K++  HSEK
Sbjct: 768 EVYEFVAGDMSHPRTDEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEK 827

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LALA+ LI    G T I+I+KN+R C DCH  +K  S I GR I+ RD NRFHHFV G+C
Sbjct: 828 LALAFGLISTQPGAT-IKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSC 886

Query: 691 SCKDNW 696
           SC D W
Sbjct: 887 SCGDYW 892



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 10/303 (3%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           +++   LL  YA++G    AR LFD M P   ++S  A+L+ +A  G++ D R+LFD +P
Sbjct: 421 SYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLP 480

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            +D V +N  I G+   G   EAL++F RM     EP + T V  L+A AQL  +  GK 
Sbjct: 481 TKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKW 540

Query: 178 IHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +H  +     +  +V V  AL DMY K G +  A  +F  + ++++V WN MI+GY  +G
Sbjct: 541 LHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHG 600

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CW 291
             +K +++F + +  GL P ++T   +L AC  +G +++    F  ++ +  +      +
Sbjct: 601 DSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHY 660

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             M+    + G  ++A  L   M    + PD     S++++C    ++  GQ +    V 
Sbjct: 661 GCMVDLLGRAGLIKEAFCLVQSM---KITPDAVMWVSLLAACRLHKNMSLGQQIADYLVA 717

Query: 352 LGV 354
            G+
Sbjct: 718 KGL 720


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/644 (35%), Positives = 349/644 (54%), Gaps = 36/644 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R+     AL+ A++  G+V   R +FD +  +D+V++   ++ ++       AL  FS+M
Sbjct: 181 RNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKM 240

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +   F+P  +   SAL A   L     GK IHG  V         V  AL DMYAK G+I
Sbjct: 241 RMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDI 300

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A  +F+ + + +++ W+ +IS Y ++ Q ++  ++F  M    + P+E ++S +L AC
Sbjct: 301 EDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQAC 360

Query: 268 FQTG-----------------------------------RIDDAGRLFHVIKEKDNVCWT 292
                                                   ++++  +F  +++ + V W 
Sbjct: 361 ANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWN 420

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           T+IVGY Q+G  EDAL +F+EM +  +   + + SSV+ +CA  +S+ H   +H      
Sbjct: 421 TIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS 480

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
             ++D +V ++LID Y KCG   DA  VF  +   +VVSWNS+I+ YA +G+   AL L+
Sbjct: 481 TFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELF 540

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           D++ + ++K +  TFVS+LS C    L  +G   F+S+   H I PS++HY C++ LLGR
Sbjct: 541 DRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGR 600

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  +  A+  I  +P  P+ ++W  LLS C +  ++  G  AA  + ++EP +   Y++L
Sbjct: 601 AGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLL 660

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYAA G  ++VA  R SM++  VKK A  SW+EI  +VH F      HP+  II   L
Sbjct: 661 SNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAML 720

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L  K    G+ P+  +VLHD  EEEK + +  HSE+LALAY L   P G  PIRIMKN
Sbjct: 721 EWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG-HPIRIMKN 779

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R C DCH   K  S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 780 LRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 142/521 (27%), Positives = 239/521 (45%), Gaps = 69/521 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDL-FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           FL   +    A++G+  +AR +    +   D    N LL+ +A+ G +   R LFD MP 
Sbjct: 51  FLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPE 110

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R+ VS+ T + G+A +G   EAL++F R+Q++  E   +   + L     +        I
Sbjct: 111 RNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGI 170

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H          N FV  AL D Y+  G +  AR +FD +  ++ V+W  M+S Y +N  P
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIP 230

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGA--CFQT-------------------------- 270
           +  ++ F +M++ G  P+   +++ L A  C  +                          
Sbjct: 231 EYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGAL 290

Query: 271 -------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  G I+DA  +F +I   D + W+ +I  Y Q+ + E A  +F  M+   V P++
Sbjct: 291 LDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNE 350

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           FS+S V+ +CA +A L  G+ +H  A+ LG + +L V +AL+DMY KC   +++  +F+ 
Sbjct: 351 FSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSS 410

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL------HA 437
           +   N VSWN++I GY Q+G   +AL+++ ++   ++     TF SVL AC       HA
Sbjct: 411 LQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHA 470

Query: 438 ----DLFERGQNHFDSI-----------------------SAVHGITPSLDHYACMINLL 470
                L E+   + D+I                       S V     S +       L 
Sbjct: 471 VQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALH 530

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           GR+++  +  D +     K N + + +LLSVC   G +  G
Sbjct: 531 GRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQG 571



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 184/381 (48%), Gaps = 50/381 (13%)

Query: 165 ACAQLL-------DLRRGKQIHGKIVVGNLGG----NVFVRNALTDMYAKGGEIDKARWL 213
           ACA+ L       D R G+ +H ++V    GG    + F  N L + YAK G +  AR L
Sbjct: 47  ACARFLQRCIARGDARAGRAVHARVV--QRGGVAQLDTFCANVLLNFYAKLGPLATARRL 104

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--------- 264
           FD M  RN VS+  ++ GY   G+ ++ ++LF+ +Q  G   +   ++ IL         
Sbjct: 105 FDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAP 164

Query: 265 -----------------GACFQTGRID---------DAGRLFHVIKEKDNVCWTTMIVGY 298
                             A   T  ID          A  +F  I  KD V WT M+  Y
Sbjct: 165 GLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCY 224

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           ++N   E AL  F++M     +P+ F ++S + +   L+S   G+ +HG +V    D + 
Sbjct: 225 SENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEP 284

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V  AL+DMY KCG  +DA  +F M+P  +V+ W+ +I+ YAQ+ Q+ +A  ++ ++++ 
Sbjct: 285 HVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRS 344

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+ F+   VL AC +    E G+    +++   G    L     ++++  +  +++ 
Sbjct: 345 FVVPNEFSLSGVLQACANIAFLELGE-QIHNLAIKLGYESELFVGNALMDMYAKCRNMEN 403

Query: 479 AVDLIKSLPHKPNSLIWSTLL 499
           ++++  SL    N + W+T++
Sbjct: 404 SLEIFSSL-QDANEVSWNTII 423



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 46/292 (15%)

Query: 299 TQNGKEEDALILFNEMLSEDVRP--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG--V 354
           ++N    +AL   ++ L+    P  D ++ +  +  C        G+ VH + V  G   
Sbjct: 19  SRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVA 78

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D   ++ L++ Y K G    A  +F+ MP RN VS+ +++ GYA  G+  EAL L+ +
Sbjct: 79  QLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRR 138

Query: 415 LLQENLKPDSFTFVSVLS----------AC-LHADLFERG--QNHFDSISAV--HGITPS 459
           L +E  + + F   ++L           AC +HA   + G  +N F   + +  + +  +
Sbjct: 139 LQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGA 198

Query: 460 LDHYACMIN-LLGRSSDVDKAV-----------------DLIKSLPHKPNSLIWSTLL-- 499
           + H  C+ + ++G+ +    A+                   ++    KPN  + ++ L  
Sbjct: 199 VCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKA 258

Query: 500 SVC---AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +VC   A+ G   HG  + + L++ EP   G    L +MYA CG  ED  +I
Sbjct: 259 AVCLSSALLGKGIHG-CSVKTLYDTEPHVGGA---LLDMYAKCGDIEDAHAI 306



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 75/140 (53%), Gaps = 6/140 (4%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
           +T+  ++ ++  C   + ++ A ++ S ++ + +  N T + N L+  YAK G +  A  
Sbjct: 449 STQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFN-NDTIVCNSLIDTYAKCGFIRDALK 507

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD----SVSYNTAIAGFANKGF 136
           +F+ +   D++SWN+++SA+A  G   +   LFD+M   D     V++ + ++   + G 
Sbjct: 508 VFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGL 567

Query: 137 SREALQVFSRMQKD-RFEPT 155
             + L +F+ M  D R +P+
Sbjct: 568 VNQGLWLFNSMMMDHRIKPS 587


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/522 (38%), Positives = 316/522 (60%), Gaps = 36/522 (6%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A  +F ++ N N+ +WN MI GY ++  P   ++L+++M +  + PD  T   +L A   
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 268 ------------------FQT---------------GRIDDAGRLFHVIKEKDNVCWTTM 294
                             F++               G  + A +LF ++ E++ V W ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I GY  NG+  +AL LF EM    V PD F++ S++S+CA+L +L  G+  H   V +G+
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGL 272

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           D +L   +AL+D+Y KCG    A  VF+ M  ++VVSW S+I G A NG   EAL L+ +
Sbjct: 273 DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE 332

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           L ++ L P   TFV VL AC H  + + G ++F  +   +GI P ++HY CM++LLGR+ 
Sbjct: 333 LERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAG 392

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            V +A + I+++P +PN+++W TLL  C + G +  GE+A   L +LEP ++G Y++LSN
Sbjct: 393 LVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSN 452

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA+  RW DV  +R +M  + VKK   +S +E+ N++H+FV  DR+HP+TE IY +L++
Sbjct: 453 LYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAE 512

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           + K L+  G+ P+   VL D +EEEK  ++ YHSEK+A+A+ LI    G+ PIR++KN+R
Sbjct: 513 ITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGI-PIRVVKNLR 571

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VC DCHL +K  S +  R I++RD +RFHHF  G+CSCKD W
Sbjct: 572 VCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 154/330 (46%), Gaps = 37/330 (11%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F ++   +  ++NT I G+A       AL+++ +M     EP  +T+   L A A+L+D
Sbjct: 96  IFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMD 155

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           +R G+++H   +       VFV+N L  MYA  G  + A  LF+ M  RNLV+WN +I+G
Sbjct: 156 VREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVING 215

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ---------------------- 269
           Y  NG+P + + LF+EM L G+ PD  T+ ++L AC +                      
Sbjct: 216 YALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGN 275

Query: 270 -------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                         G I  A ++F  ++EK  V WT++IVG   NG  ++AL LF E+  
Sbjct: 276 LHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELER 335

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           + + P + +   V+ +C+    +  G           G+   +     ++D+  + G+  
Sbjct: 336 KGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVK 395

Query: 376 DAWTVFNMMPTR-NVVSWNSMINGYAQNGQ 404
            A      MP + N V W +++     +G 
Sbjct: 396 QAHEFIQNMPMQPNAVVWRTLLGACTIHGH 425



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 110/196 (56%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A  G  +    LF+ M  R+ V++N+ I G+A  G   EAL +F  M     E
Sbjct: 179 NTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVE 238

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T VS L+ACA+L  L  G++ H  +V   L GN+   NAL D+YAK G I +A  +
Sbjct: 239 PDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKV 298

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  +++VSW  +I G   NG  K+ ++LF+E++  GL P E+T   +L AC   G +
Sbjct: 299 FDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMV 358

Query: 274 DDAGRLFHVIKEKDNV 289
           D+    F  +KE+  +
Sbjct: 359 DEGFDYFKRMKEEYGI 374



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 130/255 (50%), Gaps = 7/255 (2%)

Query: 254 NPD--EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           NPD  +  +  +L  C     +  A ++F  I+  +   W TMI GY ++     AL L+
Sbjct: 72  NPDMGKYLIFTLLSFC---SPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELY 128

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            +M    + PD  +   ++ + AKL  +  G+ VH  A+  G +  + V + L+ MY  C
Sbjct: 129 RQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAAC 188

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  + A  +F +M  RN+V+WNS+INGYA NG+  EAL L+ ++    ++PD FT VS+L
Sbjct: 189 GHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLL 248

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           SAC        G+     +  V G+  +L     +++L  +   + +A  +   +  K +
Sbjct: 249 SACAELGALALGRRAHVYMVKV-GLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK-S 306

Query: 492 SLIWSTLLSVCAMKG 506
            + W++L+   A+ G
Sbjct: 307 VVSWTSLIVGLAVNG 321


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 240/666 (36%), Positives = 354/666 (53%), Gaps = 69/666 (10%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R      A  L S +    ++  ++ L N LL  Y K G +  A  LFD+MP RD +S
Sbjct: 13  CARRQSASAAGELHSQIIKAGFD-KSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVS 71

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W ++L+AH ++            +P R     NT         F+ + LQ          
Sbjct: 72  WASILTAHNKA-----------LIPRRTLSMLNTM--------FTHDGLQ---------- 102

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  +     + AC+ L  LR GKQ+H + ++     +  V+++L DMY K G+ D AR 
Sbjct: 103 -PDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARA 161

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  +N VSW  MISGY ++G+  + +DLF           +  V N+         
Sbjct: 162 VFDSILFKNSVSWTSMISGYARSGRKCEAMDLFL----------QAPVRNLFS------- 204

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVS 331
                             WT +I G  Q+G    +  LFNEM  E +   D   +SSVV 
Sbjct: 205 ------------------WTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVG 246

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            CA LA L  G+ +HG  + LG +  L +S+AL+DMY KC     A  +F  MP ++V+S
Sbjct: 247 GCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVIS 306

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+G+  EAL LYD+++   +KP+  TFV +L AC HA L  RG+  F S++
Sbjct: 307 WTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMT 366

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             + I PSL HY C+++LL RS  +D+A +L+  +P KP+   W++LLS C    +++ G
Sbjct: 367 TDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMG 426

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
              A  + +L+P +   YI+LSN+YA    W  V+ +R  M S  V+K   YS I+    
Sbjct: 427 VRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKD 486

Query: 572 VHKF-VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
              F   E   HP    I   L  L  ++++ G+ PNT  VL+D +++EK K + +HSE+
Sbjct: 487 SQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSER 546

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+AY L+K   G T IRI+KN+R+CGDCH  +KF SDI+ R I++RD+ R+HHF  G C
Sbjct: 547 LAVAYGLLKAVPG-TIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKC 605

Query: 691 SCKDNW 696
           SC D W
Sbjct: 606 SCNDFW 611



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 186/353 (52%), Gaps = 11/353 (3%)

Query: 11  IDTLYSR-GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           ++T+++  G       +  +V  C+ +  + L K++ +   L+F+  +   + + L+  Y
Sbjct: 92  LNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFF-CDDEVVKSSLIDMY 150

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            K G+   AR +FD +  ++ +SW +++S +ARSG   +   LF + P+R+  S+   I+
Sbjct: 151 TKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTALIS 210

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLG 188
           G    G    +  +F+ M+++  +  D   +S+ +  CA L  L  GKQIHG ++     
Sbjct: 211 GLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIALGFE 270

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
             +F+ NAL DMYAK  +I  A+ +F RM  ++++SW  +I G  ++G+ ++ + L+ EM
Sbjct: 271 SCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLYDEM 330

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGK 303
            L  + P+EVT   +L AC   G +     LF  +    ++      +T ++   +++G 
Sbjct: 331 VLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSRSGH 390

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            ++A  L +++     +PD+ + +S++S+C +  +L  G  +  + + L  +D
Sbjct: 391 LDEAENLLDKI---PFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPED 440


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/713 (33%), Positives = 378/713 (53%), Gaps = 66/713 (9%)

Query: 44   RLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
            +L +H+    L+ + P +T    +L+  YA+ G    ++ +FD  P  D   W  L+  +
Sbjct: 366  QLHAHLFITGLHRHPPAST----KLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCY 421

Query: 101  ARSGSVQDLRALFDKMPIRDSVSYNT--------AIAGFAN------KGFSREALQVFSR 146
               G  ++  +L+ +M  +D    +         A +GF +       G + E L +FS+
Sbjct: 422  VWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMFSQ 481

Query: 147  MQKDRFEPTDYTHVSALNACAQLLDLR--------RGKQIHGKIVVGNLGGNV-FVRNAL 197
            M  +  EP   T +S   AC++L  LR         G+ +HG ++   +   + F+  AL
Sbjct: 482  MISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGPAL 541

Query: 198  TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             ++YA  G +     +F+ +  + ++SWN +IS + +NGQP++ + LF +MQ  GL PD 
Sbjct: 542  MELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDS 601

Query: 258  V----------TVS------NILGACFQTGRIDD------------------AGRLFHVI 283
                       T+S       I G   +TG  +D                  A ++F  I
Sbjct: 602  YSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSANKMFEKI 661

Query: 284  KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            KEK  V W +MI G++QNG   +A+ LF++M    V+ DK +  SV+ +C+ L  L  G+
Sbjct: 662  KEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGK 721

Query: 344  VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
             VH K ++ G+  D  + +AL DMY KCG    A  VF+ M  R++VSW+ MI GY  +G
Sbjct: 722  WVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHG 781

Query: 404  QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
            Q    ++L++++L   +KP+  TF+ +LSAC HA   E G+ +F+S+S   G+ P  DH+
Sbjct: 782  QINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF-GVEPKHDHF 840

Query: 464  ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            ACM++LL R+ D++ A  +I SLP   NS IW  LL+ C +   I   +   ++L +++ 
Sbjct: 841  ACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDT 900

Query: 524  INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
             + G Y +LSN+YA  G W+    +RS MKSK ++K   YS IEID K+++F   D +H 
Sbjct: 901  ADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHS 960

Query: 584  ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
            +T+ IY  L      +    +       +  T +  K  ++  HSEKLA+A+ +I    G
Sbjct: 961  QTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPG 1020

Query: 644  VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             T +RI KN+RVC DCH F K AS I GR II+RD NRFH F  G+CSC D W
Sbjct: 1021 TT-LRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 34/171 (19%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT--------------TFLHNRLLHFYAK 71
           + Q+ ++C +++ +     +Q+   L + E                 ++L   L   Y+K
Sbjct: 689 FDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSK 748

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTA 127
            G+L  A  +FD+M  R I+SW+ +++ +   G +    +LF++M    I+ + +++   
Sbjct: 749 CGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHI 808

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           ++  ++ G   E    F+ M +   EP        ++  ++  DL    QI
Sbjct: 809 LSACSHAGAVEEGKLYFNSMSEFGVEPKHDHFACMVDLLSRAGDLNGAYQI 859


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/658 (34%), Positives = 353/658 (53%), Gaps = 76/658 (11%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD--RFEPTDYTHVSALNACAQL 169
           +FD  P R   ++ + I+G A +G   + ++ F+ M  +     P  +     L  CA L
Sbjct: 80  VFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGL 139

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR-------------W---- 212
            D+  G++IHG I+   +  +V + NA+ DMYAK G+  +AR             W    
Sbjct: 140 GDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVI 199

Query: 213 --------------LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
                         LFD  + R++ SWN ++SG +++G   + +   Q+M   G+     
Sbjct: 200 RACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNY 259

Query: 259 TVSNILG-ACFQTGRIDDAGRLFH------VIKEK--------DNVC------------- 290
           T S +   A   + R  D GR  H      V++E         D  C             
Sbjct: 260 TYSMVFALAGLLSSR--DLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFD 317

Query: 291 ------------WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
                       W+TM+ GY QNG+EE+AL  F  ML E V   +F ++SV S+CA    
Sbjct: 318 RWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGM 377

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           +  G+ VHG    LG   D  ++SA++DMY K G  +DA  +F    T+NV  W +M+  
Sbjct: 378 VEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCS 437

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           YA +GQ   AL ++ ++  E + P+  T V+VLSAC H+ L   G ++F+ +   +GI P
Sbjct: 438 YASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVP 497

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
           + +HY CM++L GR+  +DKA + I+       +++W TLLS C +   I++ ++A+  L
Sbjct: 498 NTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKL 557

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            +LE  +AG Y+++SNMYA   +W D   +RSSMK + V+K    SWI + N VH+FV+ 
Sbjct: 558 VQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVAL 617

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP +  IY  L KL+++L+E G++  T LV+HD +EE++  S+ +HSEKLA+A+ +I
Sbjct: 618 DTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGII 677

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P G T +RI KN+RVC DCH  +KF +    R I++RD  RFHHF  G CSC+D W
Sbjct: 678 STPVG-TALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 206/450 (45%), Gaps = 92/450 (20%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  + DVE  +R+   +  +   P+   L N +L  YAK G    AR  F  M  +D  S
Sbjct: 136 CAGLGDVESGRRIHGWILRSGVCPDVV-LCNAVLDMYAKCGDHGRARRAFGAMAQKDATS 194

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN ++ A  + G +     LFD+  +RD  S+NT ++G    G + EAL    +M +   
Sbjct: 195 WNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGV 254

Query: 153 EPTDYTHVSALNACAQLLDLRR-GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             ++YT+ S + A A LL  R  G+Q+HG++VV  L  + FV  +L DMY K GE++ A 
Sbjct: 255 TFSNYTY-SMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESAL 313

Query: 212 WLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            +FDR ++       +W+ M++GY++NG+ ++ ++ F+ M   G+   +  ++++  AC 
Sbjct: 314 SIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACA 373

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              ++G ++DA R+F   + K+   WTT
Sbjct: 374 NAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTT 433

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+  Y  +G+   AL +F+ M +E + P++ ++ +V+S+C+                   
Sbjct: 434 MLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACS------------------- 474

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-----NVVSWNSMINGYAQNGQDLEA 408
                             G+  D +  FN+M        N   +N M++ Y + G     
Sbjct: 475 ----------------HSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAG----- 513

Query: 409 LALYDK---LLQEN-LKPDSFTFVSVLSAC 434
             L DK    ++EN +  ++  + ++LSAC
Sbjct: 514 --LLDKAKNFIEENKISHEAVVWKTLLSAC 541



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 2/144 (1%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE--DVRPDKFSISSVV 330
           + +A R+F     +    WT++I G  + G+  D +  F EML E     P+ F ++ V+
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
             CA L  +  G+ +HG  +  GV  D+++ +A++DMY KCG    A   F  M  ++  
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 391 SWNSMINGYAQNGQDLEALALYDK 414
           SWN +I    Q+G  + A  L+D+
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDE 217



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSA 433
           +A  VF+  PTR++ +W S+I+G A+ G+  + +  + ++L E     P++F    VL  
Sbjct: 76  NAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRC 135

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C      E G+     I    G+ P +     ++++  +  D  +A     ++  K ++ 
Sbjct: 136 CAGLGDVESGRRIHGWI-LRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQK-DAT 193

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFE 520
            W+ ++  C   GD+    + A  LF+
Sbjct: 194 SWNIVIRACLQDGDL----VGATQLFD 216


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/646 (34%), Positives = 368/646 (56%), Gaps = 47/646 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+   A+ GS+ + R++FD +  ++  S+N  I+ +A++G    AL +F++M      
Sbjct: 80  NLLVLMLAKHGSLCEARSIFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMD---VP 136

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARW 212
           PT  T  +AL+AC+ L DL+RG++IH +I     +  +V +  A+  MYAK G++  A+ 
Sbjct: 137 PTAMTFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKS 196

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPK-KCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
           +FDR+  +N+VSWN +I+ Y ++G    + +DLF++M   G+ P   T   +LGAC    
Sbjct: 197 VFDRIPAKNVVSWNALIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVT 256

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G ++ A  +F  ++ +D V    MI 
Sbjct: 257 SLEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIA 316

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGV 354
            + Q G  ++++ +F EM  E +  D  + +SV+++C+   +L  G+ +H + V  VLG 
Sbjct: 317 TFAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGR 376

Query: 355 D---DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                +++V +AL+ MY KCG  + A  VF  M T+N VSWN+M+   A  GQ  EA A 
Sbjct: 377 KCCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAF 436

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
                 E ++ DS +F+SVL AC H+ + E   +HF  + +   + P+ ++Y CM++LL 
Sbjct: 437 LRAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLA 496

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS  +  A +L+ S+P  P+++ W TLL  C ++G +++   AA   F LEP N  PY +
Sbjct: 497 RSGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTL 556

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFA-AYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           LS++Y+A G+ +++  +RSSMK + ++K     S IE+  +VH+FV+ D +HP+ + I  
Sbjct: 557 LSSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILR 616

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL  L  +L++AGF P+T  V+HD + E+K + +  HSEKLA+A+ LI    G+ P+ ++
Sbjct: 617 ELDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSGI-PLLVL 675

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH  +K  S +  R I +RD+NRFH F  G CSC D W
Sbjct: 676 KNLRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/676 (33%), Positives = 381/676 (56%), Gaps = 45/676 (6%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLR-------DIISWNALLSAHARSGSVQDLRALFDKMP 117
           LL F A +  L + + +  ++ +R       DI   N+L++ +++ G  +  R LFD+M 
Sbjct: 29  LLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDRML 88

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGK 176
            R+ VS++  + G+ +KG   E L +F  +   D   P +Y     L+ CA    ++ GK
Sbjct: 89  QRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGK 148

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q HG ++   L  + +V+NAL  MY++   +D A  + D +   ++ S+N ++S  +++G
Sbjct: 149 QCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESG 208

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT-------------------------- 270
              +   + + M    +  D VT  ++LG C Q                           
Sbjct: 209 CRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSS 268

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                    G + +A + F  +++++ V WT ++  Y QNG  E+ L LF +M  ED RP
Sbjct: 269 TLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRP 328

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           ++F+ + ++++CA L +L +G ++HG+ V+ G  + L+V +ALI+MY K G  D ++ VF
Sbjct: 329 NEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVF 388

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           + M  R+V++WN+MI GY+ +G   +AL ++  ++     P+  TF+ VLSAC+H  L +
Sbjct: 389 SNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQ 448

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLS 500
            G  +FD I     + P L+HY CM+ LLGR+  +D+A + +K+    K + + W TLL+
Sbjct: 449 EGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLN 508

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C +  +   G+     + +++P + G Y +LSNM+A   +W+ V  IR  MK +N+KK 
Sbjct: 509 ACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKE 568

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SW++I N  H FVSE   HPE+  I+E++ +L+  ++  G++P+  +VLHD ++E+K
Sbjct: 569 PGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQK 628

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
              + +HSEKLALAY L+K P    PIRI+KN+R+C DCH+ +K  S    R II+RD+N
Sbjct: 629 EGYLSHHSEKLALAYGLMKIP-PPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDAN 687

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  G C+C D+W
Sbjct: 688 RFHHFREGLCTCNDHW 703



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 178/384 (46%), Gaps = 83/384 (21%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG----SVQDLRALFDK 115
           ++ N L+H Y++   +  A  + D +P  D+ S+N++LSA   SG    + Q L+ + D+
Sbjct: 164 YVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDE 223

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
             I DSV+Y                                   VS L  CAQ+ DL+ G
Sbjct: 224 CVIWDSVTY-----------------------------------VSVLGLCAQIRDLQLG 248

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
            QIH +++   L  +VFV + L D Y K GE+  AR  FD + +RN+V+W  +++ YL+N
Sbjct: 249 LQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQN 308

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
           G  ++ ++LF +M+L    P+E T + +L AC                            
Sbjct: 309 GHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVG 368

Query: 269 --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   ++G ID +  +F  +  +D + W  MI GY+ +G  + AL++F +M+S    
Sbjct: 369 NALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGEC 428

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           P+  +   V+S+C  LA +  G     + +    V+  L   + ++ +  + G+ D+A  
Sbjct: 429 PNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAE- 487

Query: 380 VFNMMPTR-----NVVSWNSMING 398
             N M T      +VV+W +++N 
Sbjct: 488 --NFMKTTTQVKWDVVAWRTLLNA 509



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/265 (28%), Positives = 131/265 (49%), Gaps = 32/265 (12%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
            Y  ++  C ++ D++L  ++ + + L        F+ + L+  Y K G++  AR  FD 
Sbjct: 231 TYVSVLGLCAQIRDLQLGLQIHAQL-LKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDG 289

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  R++++W A+L+A+ ++G  ++   LF KM + D+                       
Sbjct: 290 LRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDT----------------------- 326

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
                    P ++T    LNACA L+ L  G  +HG+IV+     ++ V NAL +MY+K 
Sbjct: 327 --------RPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKS 378

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ID +  +F  M NR++++WN MI GY  +G  K+ + +FQ+M   G  P+ VT   +L
Sbjct: 379 GNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVL 438

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV 289
            AC     + +    F  I +K +V
Sbjct: 439 SACVHLALVQEGFYYFDQIMKKFDV 463



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 90/182 (49%), Gaps = 24/182 (13%)

Query: 321 PDKFSISSVV-----SSCAKLASLYHGQVVHGKAVV---LGVDDDLLVSSALIDMYCKCG 372
           P   S+  VV     S+ AK  SL  G+ +H + VV      D D+   ++LI++Y KCG
Sbjct: 18  PHPCSLKEVVNLLKFSATAK--SLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCG 75

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVL 431
            +  A  +F+ M  RNVVSW++++ GY   G+ LE L L+  L+  ++  P+ + F  VL
Sbjct: 76  QSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVL 135

Query: 432 SACLHADLFERGQNHFDSISAVHGITPS----LDHYA--CMINLLGRSSDVDKAVDLIKS 485
           S C  +   + G+         HG        L  Y    +I++  R   VD A+ ++ +
Sbjct: 136 SCCADSGRVKEGKQ-------CHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDT 188

Query: 486 LP 487
           +P
Sbjct: 189 VP 190


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/705 (34%), Positives = 366/705 (51%), Gaps = 98/705 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFS 145
           ++   NAL++ ++R GS++D   +FD++    I D +S+N+ +A        R AL++FS
Sbjct: 183 NVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFS 242

Query: 146 RM-----QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
            M     +K   E +D    V+ L ACA L  L + K+IH   +      + FV NAL D
Sbjct: 243 EMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALID 302

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ---------------------- 237
            YAK G ++ A  +F+ M  +++VSWN M++GY ++G                       
Sbjct: 303 TYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVIT 362

Query: 238 -------------PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD--------- 275
                         ++ +D FQ+M L G  P+ VT+ ++L AC   G +           
Sbjct: 363 WSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSL 422

Query: 276 --------------------------------------AGRLFHVI--KEKDNVCWTTMI 295
                                                 A  +F  I  +E++ V WT MI
Sbjct: 423 KKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMI 482

Query: 296 VGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            GY Q G   DAL +F+EM+S+   V P+ ++IS ++ +CA LA+L  G+ +H       
Sbjct: 483 GGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHH 542

Query: 354 VDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +     V++ LIDMY KCG  D A  VF+ MP RN VSW SM++GY  +G+  EAL +
Sbjct: 543 EYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDI 602

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +DK+ +    PD  +F+ +L AC H+ + ++G N+FD +   + +  S +HYAC+I+LL 
Sbjct: 603 FDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLA 662

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R   +DKA   I+ +P +P+++IW  LLS C +  +++  E A   L  ++  N G Y +
Sbjct: 663 RCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTL 722

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           +SN+YA   RW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  
Sbjct: 723 ISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSL 782

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L +LI +++  G+ P T   LHD  +EEK   +  HSEKLALAY L+    G  PIRI K
Sbjct: 783 LERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPG-CPIRITK 841

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH    + S I+   II+RDS+RFHHF  G+CSC   W
Sbjct: 842 NLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 238/509 (46%), Gaps = 97/509 (19%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
             +++++   G+ +D  ++ +++    +V +N  +     +G    A+ V  RM +   +
Sbjct: 87  TGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTK 146

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T   AL AC +L     G+ +HG I       NVFV NAL  MY++ G ++ A  +
Sbjct: 147 PDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLV 206

Query: 214 FDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLL------GLNPDEVTVSNIL 264
           FD +  +   +++SWN +++ ++K   P+  ++LF EM ++          D +++ NIL
Sbjct: 207 FDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNIL 266

Query: 265 GAC-----------------------------------FQTGRIDDAGRLFHVIKEKDNV 289
            AC                                    + G ++DA ++F+V++ KD V
Sbjct: 267 PACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVV 326

Query: 290 CWTTMIVGYTQNGK-----------------------------------EEDALILFNEM 314
            W  M+ GYTQ+G                                     ++AL  F +M
Sbjct: 327 SWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM 386

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG---KAVVLGV---------DDDLLVSS 362
           + +   P+  +I S++S+CA L +L  G  +H    K  +L +          +DL+V +
Sbjct: 387 ILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYN 446

Query: 363 ALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-- 418
           ALIDMY KC     A ++F+ +P   RNVV+W  MI GYAQ G   +AL ++ +++ +  
Sbjct: 447 ALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPY 506

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA-CMINLLGRSSDVD 477
            + P+++T   +L AC H      G+     ++  H   PS+   A C+I++  +  DVD
Sbjct: 507 AVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A ++  S+P K N + W++++S   M G
Sbjct: 567 TARNVFDSMP-KRNEVSWTSMMSGYGMHG 594



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/442 (28%), Positives = 212/442 (47%), Gaps = 74/442 (16%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
            F+ N L+  YAK G +  A  +F+ M  +D++SWNA+++ + +SG+      LF+ M  
Sbjct: 294 AFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353

Query: 117 ---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
              P+ D ++++  IAG+A +G S+EAL  F +M  D  EP   T +S L+ACA L  L 
Sbjct: 354 ENIPL-DVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALS 412

Query: 174 RGKQIHGKIVVGNL------------GGNVFVRNALTDMYAKGGEIDKARWLFDRM--NN 219
           +G +IH   +   L            G ++ V NAL DMY+K      AR +FD +    
Sbjct: 413 QGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRE 472

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACF--------- 268
           RN+V+W +MI GY + G     + +F EM  +   + P+  T+S IL AC          
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGK 532

Query: 269 ----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G +D A  +F  + +++ V WT+M+ GY  
Sbjct: 533 QIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGM 592

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV--VLGVDDDL 358
           +G+ ++AL +F++M      PD  S   ++ +C+     + G V  G     ++  D D+
Sbjct: 593 HGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS-----HSGMVDQGLNYFDIMRRDYDV 647

Query: 359 LVS----SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING-YAQNGQDLEALALY 412
           + S    + +ID+  +CG  D AW     MP   + V W ++++     +  +L   AL 
Sbjct: 648 VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYAL- 706

Query: 413 DKLLQENLKPD-SFTFVSVLSA 433
           +KL+    + D S+T +S + A
Sbjct: 707 NKLVNMKAENDGSYTLISNIYA 728



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 77/144 (53%), Gaps = 7/144 (4%)

Query: 14  LYSRGQAATEEAYT--QLVLDCTRVNDVELAKRLQSHMDLNF-YEPNTTFLHNRLLHFYA 70
           + S+  A    AYT   +++ C  +  + + K++ +++  +  YEP+  F+ N L+  Y+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYS 560

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNT 126
           K G +  AR++FD MP R+ +SW +++S +   G  ++   +FDKM     + D +S+  
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 127 AIAGFANKGFSREALQVFSRMQKD 150
            +   ++ G   + L  F  M++D
Sbjct: 621 LLYACSHSGMVDQGLNYFDIMRRD 644



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + ++  Y  CG T DA +V   +     V WN ++  + + G    A+ +  ++L+  
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 420 LKPDSFTFVSVLSAC 434
            KPD FT    L AC
Sbjct: 145 TKPDHFTLPYALKAC 159


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/618 (35%), Positives = 342/618 (55%), Gaps = 73/618 (11%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N  F+ NRL+  YAK G L   R LFDKMP R++ +WN++++   + G + +  +LF  M
Sbjct: 53  NEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSM 112

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P RD  ++N+ ++GFA      EAL  F+ M K+ F   +YT  S L+AC+ L D+ RG 
Sbjct: 113 PERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGV 172

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           QIH  I       +V++ +AL DMY+K G ++ A+ +FD M +RN+VSWN +I+ Y +NG
Sbjct: 173 QIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNG 232

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
              + + +FQ M    + PDEVT+++++ AC                             
Sbjct: 233 PAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILS 292

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNVCWTTMI------------------------- 295
                   +  RI +A  +F  +  ++ +  T+M+                         
Sbjct: 293 NAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVV 352

Query: 296 ------VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ------ 343
                  GYTQNG+ E+AL LF  +  E V P  ++ ++++ +CA LA L+ G       
Sbjct: 353 SWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHV 412

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
           + HG     G +DD+ V ++LIDMY KCG  ++ + VF  M  R+ VSWN+MI G+AQNG
Sbjct: 413 LKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNG 472

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              EAL L+ ++L    KPD  T + VLSAC HA   E G+++F S++   G+ P  DHY
Sbjct: 473 YGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY 532

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            CM++LLGR+  +++A  +I+ +P +P+S+IW +LL+ C +  +I  G+  A  LFE+E 
Sbjct: 533 TCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVET 592

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            N+GPY++LSNMYA  G+W D  ++R  M+ + V K    SWI+I    H F+ +D++HP
Sbjct: 593 SNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVFMVKDKSHP 652

Query: 584 ETEIIYEELSKLIKKLQE 601
             + I+  L  LI ++++
Sbjct: 653 RKKQIHSLLDILIAEMRQ 670



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/400 (28%), Positives = 192/400 (48%), Gaps = 48/400 (12%)

Query: 163 LNACAQL----LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           L++C +L    +D+R    +H  ++       VF++N L D YAK G ++  R LFD+M 
Sbjct: 26  LDSCIKLKLSAIDVR---CVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMP 82

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            RN+ +WN +++G  K                                    G +D+A  
Sbjct: 83  QRNVFTWNSVVTGLTK-----------------------------------LGFLDEADS 107

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           LF  + E+D   W +M+ G+ Q+ + E+AL  F  M  E    ++++ +S +S+C+ L  
Sbjct: 108 LFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLND 167

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           +  G  +H          D+ + SAL+DMY KCG  +DA  VF+ M  RNVVSWNS+I  
Sbjct: 168 MNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITC 227

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           Y QNG  +EAL ++  +L+  ++PD  T  SV+SAC      + GQ     +  +  +  
Sbjct: 228 YEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRN 287

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            +      +++  + S + +A  +  S+P + N +  ++++S  AM    K    AAR +
Sbjct: 288 DIILSNAFVDMYAKCSRIKEARFIFDSMPIR-NVIAETSMVSGYAMAASTK----AARLM 342

Query: 519 F-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           F ++   N   +  L   Y   G  E+  S+   +K ++V
Sbjct: 343 FTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESV 382



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 129/311 (41%), Gaps = 83/311 (26%)

Query: 324 FSISS----VVSSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           F++SS    ++ SC KL  S    + VH   +  G  +++ + + LID Y KCG  +D  
Sbjct: 16  FTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGR 75

Query: 379 TVFNMMPTRNV-------------------------------VSWNSMINGYAQNGQDLE 407
            +F+ MP RNV                                +WNSM++G+AQ+ +  E
Sbjct: 76  QLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEE 135

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-DHY--A 464
           AL  +  + +E    + +TF S LSAC   +   RG      I ++   +P L D Y  +
Sbjct: 136 ALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQ----IHSLIAKSPCLSDVYIGS 191

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHK----------------------------------P 490
            ++++  +  +V+ A  +   +  +                                  P
Sbjct: 192 ALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEP 251

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWEDVA 546
           + +  ++++S CA    IK G+     + +++ +     I+LSN    MYA C R ++  
Sbjct: 252 DEVTLASVISACASLSAIKVGQEVHARVVKMDKLRND--IILSNAFVDMYAKCSRIKEAR 309

Query: 547 SIRSSMKSKNV 557
            I  SM  +NV
Sbjct: 310 FIFDSMPIRNV 320



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           T   +  ++  C  + D+ L  +   H+          E +  F+ N L+  Y K G + 
Sbjct: 385 THYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVE 444

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSG----SVQDLRALFDKMPIRDSVSYNTAIAGFA 132
               +F KM  RD +SWNA++   A++G    +++  R + D     D ++    ++   
Sbjct: 445 EGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACG 504

Query: 133 NKGFSREALQVFSRMQKD 150
           + GF  E    FS M +D
Sbjct: 505 HAGFVEEGRHYFSSMTRD 522


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/428 (44%), Positives = 282/428 (65%), Gaps = 1/428 (0%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G  D A  +F  + +KD + WT+++ G   NG  E+AL LF EM    + PD+  I++
Sbjct: 14  KXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAA 73

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+S+CA+L  L  G+ VH   +  G+   L V ++L+ MY KCG  +DA  VF+ M  ++
Sbjct: 74  VLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQD 133

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           V++W ++I GYAQNG+  E+L  Y+ ++   +KPD  TF+ +L AC HA L E G+++F 
Sbjct: 134 VITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQ 193

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           S+  V+GI P  +HYACMI+LLGRS  + +A +L+  +  +P++ +W  LL+ C + G++
Sbjct: 194 SMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNV 253

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + GE AA +LFELEP NA PY++LSN+Y+A G+WE+ A  R  MK + V K    SWIE+
Sbjct: 254 ELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEM 313

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
            +KVH+F+SEDR+HP T  IY ++ +++  ++EAG+ P+    LHD  EE K   + YHS
Sbjct: 314 SSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHS 373

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           EKLA+A+ L+  P G  PIRI KN+R+CGDCH  MK+ S +  R +ILRDSN FHHF  G
Sbjct: 374 EKLAVAFGLLTMPPG-APIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREG 432

Query: 689 NCSCKDNW 696
            CSC D W
Sbjct: 433 ACSCSDYW 440



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 162/350 (46%), Gaps = 53/350 (15%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            ++N L+  YAK G   YA D+F+KM  +D+ISW +L++    +GS +            
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYE------------ 50

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                              EAL++F  M+     P      + L+ACA+L  L  GKQ+H
Sbjct: 51  -------------------EALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVH 91

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              +   LG ++ V N+L  MYAK G I+ A  +FD M  +++++W  +I GY +NG+ +
Sbjct: 92  ANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGR 151

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTM 294
           + ++ + +M   G+ PD +T   +L AC   G ++     F  ++E   +      +  M
Sbjct: 152 ESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACM 211

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV---V 351
           I    ++GK  +A  L N+M    V+PD     +++++C       HG V  G+     +
Sbjct: 212 IDLLGRSGKLMEAKELLNQMA---VQPDATVWKALLAACR-----VHGNVELGERAANNL 263

Query: 352 LGVDDDLLVSSALI-DMYCKCGVTDDAWTVFNMMPTRNV-----VSWNSM 395
             ++    V   L+ ++Y   G  ++A     +M  R V      SW  M
Sbjct: 264 FELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEM 313



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 146/294 (49%), Gaps = 71/294 (24%)

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V NAL DMYAK G  D A  +F++M +++++SW  +++G + NG  ++ + LF EM+++
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 252 GLNPDEVTVSNILGACFQ-----------------------------------TGRIDDA 276
           G++PD++ ++ +L AC +                                    G I+DA
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            ++F  ++ +D + WT +IVGY QNG+  ++L  +N+M++  V+PD  +   ++ +C+  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS-- 180

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
              + G V HG++    +++                       V+ + P      +  MI
Sbjct: 181 ---HAGLVEHGRSYFQSMEE-----------------------VYGIKPGPE--HYACMI 212

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHA--DLFERGQNHF 447
           +   ++G+ +EA  L   L Q  ++PD+  + ++L+AC +H   +L ER  N+ 
Sbjct: 213 DLLGRSGKLMEAKEL---LNQMAVQPDATVWKALLAACRVHGNVELGERAANNL 263



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/203 (28%), Positives = 89/203 (43%), Gaps = 33/203 (16%)

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           LV++AL+DMY K G  D A+ VF  M  ++V+SW S++ G   NG   EAL L+ ++   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 419 NLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDH-YACMINLLGRSSDV 476
            + PD     +VLSAC    + E G Q H + + +  G + S+D+    M    G   D 
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 477 DKAVD------------LIKSLPH-------------------KPNSLIWSTLLSVCAMK 505
           +K  D            LI                        KP+ + +  LL  C+  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 506 GDIKHGEMAARHLFELEPINAGP 528
           G ++HG    + + E+  I  GP
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGP 205



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 41/190 (21%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEP---NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           C  +  +E  K++ +    NF +    ++  + N L+  YAK G +  A  +FD M ++D
Sbjct: 78  CAELTVLEFGKQVHA----NFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQD 133

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           +I+W AL                               I G+A  G  RE+L  ++ M  
Sbjct: 134 VITWTAL-------------------------------IVGYAQNGRGRESLNFYNBMIA 162

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI--VVGNLGGNVFVRNALTDMYAKGGEI 207
              +P   T +  L AC+    +  G+     +  V G   G       + D+  + G++
Sbjct: 163 SGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYA-CMIDLLGRSGKL 221

Query: 208 DKARWLFDRM 217
            +A+ L ++M
Sbjct: 222 MEAKELLNQM 231


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 364/700 (52%), Gaps = 93/700 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L N L+  YAK G+L  A ++F  MP R+++SW AL+                     
Sbjct: 39  TMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALM--------------------- 77

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQ 177
                      GF   G +RE L++   M+      P ++T  ++L AC  + D+  G  
Sbjct: 78  ----------VGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVW 127

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IHG  V     G+  V N+L  +Y+KGG I  AR +FD    RNLV+WN MISGY   G 
Sbjct: 128 IHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGH 187

Query: 238 PKKCIDLFQEMQLLGL-----NPDEVTVSNILGACFQTGRIDD----------------- 275
            +  + +F+EMQ          PDE T +++L AC   G   +                 
Sbjct: 188 GRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTAS 247

Query: 276 ---------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                                A ++F+ +++K+ + WTT+IVG+ Q G+ ++A+ LF   
Sbjct: 248 NAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRF 307

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            S  VR D   +SSVV   A  A +  G+ VH   V      D+ V+++LIDMY KCG+T
Sbjct: 308 WSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLT 367

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           D+A   F  +P RNVVSW +MING  ++G   EA+ +++++  E ++PD   ++++LSAC
Sbjct: 368 DEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSAC 427

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
            H+ L E  + +F +I     + P  +HYACM++LLGR+ ++ +A DL+ ++P  P   +
Sbjct: 428 SHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGV 487

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W TLLS C +  ++  G  A   L  ++  N   Y+MLSN++A  G W +   +R +M+ 
Sbjct: 488 WQTLLSACRVHKNVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRR 547

Query: 555 KNVKKFAAYSWIEIDNKVHKFV-SEDRTHPETEIIYEELSKLIKKLQEA-GFSPN----- 607
           + ++K    SW+E+  + H F    D +HP    I   L  + + ++E  G+SP      
Sbjct: 548 RGLRKQGGCSWVEVGKEAHFFYGGGDDSHPRAADICCVLRDVERTMRERLGYSPGSSSSS 607

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALA-YCLIKKPH------GVTP----IRIMKNIRVC 656
           ++  LHD  EE + +S+  HSE+LA+  + L+   H      G T     IR+ KN+RVC
Sbjct: 608 SEAALHDVDEESRAESLRAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVC 667

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH F K  S ++GR +++RD+NRFH F  G CSCKD W
Sbjct: 668 GDCHEFFKGLSSVVGRVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 194/403 (48%), Gaps = 52/403 (12%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L A A    +  G Q+HG ++    G +  + N L DMYAK GE+  A  +F  M  RN+
Sbjct: 11  LRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNV 70

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNIL----------------G 265
           VSW  ++ G+L++G  ++C+ L   M+ L  + P+E T+S  L                G
Sbjct: 71  VSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHG 130

Query: 266 ACFQT-------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
           AC +                    GRI DA R+F     ++ V W  MI GY   G   D
Sbjct: 131 ACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRD 190

Query: 307 ALILFNEML-----SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLL 359
           +L++F EM       ED +PD+F+ +S++ +C  L +   G  VH   V+ GV    + +
Sbjct: 191 SLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAI 250

Query: 360 VSSALIDMYCKCG-VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           ++ AL+DMY KC  +   A  VFN +  +N + W ++I G+AQ GQ  EA+ L+ +    
Sbjct: 251 LAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSS 310

Query: 419 NLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            ++ D     SV+       L E+G Q H  ++    G+  S+ +   +I++  +    D
Sbjct: 311 GVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVAN--SLIDMYHKCGLTD 368

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +A    + +P + N + W+ +++     G   HG+ A  H+FE
Sbjct: 369 EAARRFREVPAR-NVVSWTAMINGLGKHG---HGQEAI-HMFE 406



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 62/110 (56%), Gaps = 1/110 (0%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           I+ ++ + A  ++++ G  +HG  + LG   D ++ + LIDMY KCG    A  VF  MP
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMP 66

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSAC 434
            RNVVSW +++ G+ ++G   E L L   +    ++ P+ FT  + L AC
Sbjct: 67  ERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKAC 116


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/638 (34%), Positives = 358/638 (56%), Gaps = 45/638 (7%)

Query: 96   LLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            L+S + + GS+ +   +F +MP+  R  V++N  +  +A    S+EA      M +    
Sbjct: 479  LVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVL 538

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P   +  S L++C       +  Q+    ++ +   +  +  AL  M+ +  E+++AR +
Sbjct: 539  PDALSFTSVLSSCY----CSQEAQVLRMCILESGYRSACLETALISMHGRCRELEQARSV 594

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
            F+ M++ ++VSW  M+S   +N   K+  +LF+ MQL G+ PD+ T++  L  C  +   
Sbjct: 595  FNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTL 654

Query: 271  --------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                            G   +A   F  +K +D V W  M   Y
Sbjct: 655  GLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAY 714

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             Q G  ++A++LF +M  E V+PDK + S+ ++     A +  G++ H  A   G+D D+
Sbjct: 715  AQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDV 774

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             V++ L+ +Y KCG  D+A ++F       VV  N++I   AQ+G   EA+ ++ K+ QE
Sbjct: 775  SVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQE 834

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             ++PD  T VS++SAC HA + E G + F ++    GI+P+L+HYAC ++LLGR+  ++ 
Sbjct: 835  GVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEH 894

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A  +I+ +P + N+L+W++LL  C ++GD + GE  A+ + EL+P N+  +++LSN+Y A
Sbjct: 895  AEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCA 954

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             G+W+D    R  M  +NVK     SW EI  +VH+FV+ DR+HP+T+ IY  L KL   
Sbjct: 955  TGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELL 1014

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++ AG+  +  L   D ++E K K++ YHSE++A+A+ LI  P   T ++I+KN+RVCGD
Sbjct: 1015 MRRAGYEADKGL---DVEDELKEKALGYHSERIAIAFGLIATPPETT-LKIVKNLRVCGD 1070

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH   K+ S ++GR II+RDS RFHHF  G CSCKD W
Sbjct: 1071 CHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/536 (26%), Positives = 253/536 (47%), Gaps = 53/536 (9%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSG------KLFYARDLFDKMPLRDIISWNALLSAHAR 102
           + L    PN+  L   +L+  A SG      + F+ R +++   LRD++  NA++S +A+
Sbjct: 325 LRLEGMRPNSVTLIT-ILNALAASGVDFGAARGFHGR-IWESGYLRDVVIGNAIISMYAK 382

Query: 103 SGSVQDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
            G      A+F ++  + D +S+NT +    ++    + +  F  M     +P   + ++
Sbjct: 383 CGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIA 442

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDRM--N 218
            LNAC+    L  G++IH  I+          V   L  MY K G I +A  +F  M   
Sbjct: 443 ILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLP 502

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-------------- 264
           +R+LV+WN+M+  Y +N + K+      EM   G+ PD ++ +++L              
Sbjct: 503 SRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRM 562

Query: 265 --------GACFQTGRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                    AC +T  I   GR         +F+ +   D V WT M+    +N   ++ 
Sbjct: 563 CILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEV 622

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
             LF  M  E V PDKF++++ + +C    +L  G+V+H     +G++ D+ V +AL++M
Sbjct: 623 HNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNM 682

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y  CG   +A + F  M  R++VSWN M   YAQ G   EA+ L+ ++  E +KPD  TF
Sbjct: 683 YSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTF 742

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            + L+    + L   G+  F +++A  G+   +     ++ L  +   +D+A+ L +   
Sbjct: 743 STTLNVSGGSALVSDGK-LFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFR--- 798

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHG--EMAARHLFELEPINAGPYI-MLSNMYAACG 540
               +  W+ +L    +    +HG  E A +  ++++     P +  L ++ +ACG
Sbjct: 799 ---GACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACG 851



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 150/553 (27%), Positives = 264/553 (47%), Gaps = 89/553 (16%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN-KGFSREALQVFSRMQKDRF 152
           NA+++ +A+ GS++D  A+F  +P +D VS+      +A  + F  +AL++F  M     
Sbjct: 170 NAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPL 229

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T ++AL AC  L   R G  +H  +   +LG +    NAL +MY K G+ + A  
Sbjct: 230 APNVITFITALGACTSL---RDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYS 286

Query: 213 LFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           +F  M +R   +LVSWN MIS  ++ G+    + +F+ ++L G+ P+ VT+  IL A   
Sbjct: 287 VFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAA 346

Query: 270 T-----------GRIDDAGRL-------------------------FHVIKEK-DNVCWT 292
           +           GRI ++G L                         F  I+ K D + W 
Sbjct: 347 SGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWN 406

Query: 293 TMIVGYTQNGKEEDALI-LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           TM+ G +++ K    ++  F+ ML   + P+K S  +++++C+   +L  G+ +H  +++
Sbjct: 407 TML-GASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIH--SLI 463

Query: 352 LGVDDDLL---VSSALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDL 406
           L    D +   V++ L+ MY KCG   +A  VF  M  P+R++V+WN M+  YAQN +  
Sbjct: 464 LTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSK 523

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSAC--------LHADLFERGQNHF---DSISAVHG 455
           EA     ++LQ  + PD+ +F SVLS+C        L   + E G        ++ ++HG
Sbjct: 524 EAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQVLRMCILESGYRSACLETALISMHG 583

Query: 456 ----------ITPSLDH-----YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWST 497
                     +   +DH     +  M++    + D  +  +L + +  +   P+    +T
Sbjct: 584 RCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLAT 643

Query: 498 LLSVCAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            L  C     +  G++    + E  LE   A    +L NMY+ CG W +  S   +MK++
Sbjct: 644 TLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALL-NMYSNCGDWREALSFFETMKAR 702

Query: 556 NVKKF----AAYS 564
           ++  +    AAY+
Sbjct: 703 DLVSWNIMSAAYA 715



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 137/534 (25%), Positives = 233/534 (43%), Gaps = 86/534 (16%)

Query: 19  QAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           +AA  + YT L+  C   ND  LAK   +H +  N       FL N L++ Y + G L  
Sbjct: 21  RAADLQEYTALLQSCVDSND--LAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEE 78

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +F KM  R+++SW AL+SA+A+ G+     ALF  M +  S +              
Sbjct: 79  AHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAA-------------- 124

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL----GGNVFV 193
                           P  YT V+ LNACA   DL  G+ IH  I    L         V
Sbjct: 125 ----------------PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLV 168

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLG 252
            NA+ +MYAK G ++ A  +F  +  +++VSW  M   Y +  +     + +F+EM L  
Sbjct: 169 GNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQP 228

Query: 253 LNPDEVTVSNILGACFQT-----------------------------GRIDDAGRLFHVI 283
           L P+ +T    LGAC                                G+  D    + V 
Sbjct: 229 LAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVF 288

Query: 284 K------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           K      E D V W  MI    + G+  DA+ +F  +  E +RP+  ++ +++++ A   
Sbjct: 289 KAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG 348

Query: 338 SLY-HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSM 395
             +   +  HG+    G   D+++ +A+I MY KCG    AW VF  +  + +V+SWN+M
Sbjct: 349 VDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTM 408

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           +          + +  +  +L   + P+  +F+++L+AC +++  + G+     I     
Sbjct: 409 LGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI----- 463

Query: 456 ITPSLDHY-----ACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCA 503
           +T   D+        ++++ G+   + +A  + K +P    SL+ W+ +L   A
Sbjct: 464 LTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYA 517



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 82/349 (23%)

Query: 315 LSEDVRPDKFS----ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           LS  VR D+ +     ++++ SC     L  G+  H      G++  L + + LI+MY +
Sbjct: 13  LSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVR 72

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK-LLQENLKPDSFTFVS 429
           CG  ++A  +F+ M  RNVVSW ++I+  AQ G    A AL+   LL+ +  P+S+T V+
Sbjct: 73  CGSLEEAHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVA 132

Query: 430 VLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           +L+AC           +HA ++E G     + + + G          MIN+  +   ++ 
Sbjct: 133 MLNACANSRDLAIGRSIHAMIWELGLERASTTATLVG--------NAMINMYAKCGSLED 184

Query: 479 AVDLIKSLPHK-----------------------------------PNSLIWSTLLSVCA 503
           A+ +  ++P K                                   PN + + T L  C 
Sbjct: 185 AIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 504 MKGDIKHGEMAARHLFE----LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
               ++ G      L E     +P+ +   I   NMY  CG WE   S+  +M S+  ++
Sbjct: 245 ---SLRDGTWLHSLLHEASLGFDPLASNALI---NMYGKCGDWEGAYSVFKAMASR--QE 296

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
               SW    N +     E   H +   I+       ++L+  G  PN+
Sbjct: 297 LDLVSW----NAMISASVEAGRHGDAMAIF-------RRLRLEGMRPNS 334



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 31/225 (13%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N LL+ Y+  G    A   F+ M  RD++SWN + +A+A++                 
Sbjct: 675 VENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA----------------- 717

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                         G ++EA+ +F +MQ +  +P   T  + LN       +  GK  H 
Sbjct: 718 --------------GLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHA 763

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                 L  +V V   L  +YAK G++D+A  LF    +  +V  N +I    ++G  ++
Sbjct: 764 LAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEE 823

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            + +F +MQ  G+ PD  T+ +I+ AC   G +++    F  +KE
Sbjct: 824 AVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKE 868


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/618 (37%), Positives = 340/618 (55%), Gaps = 39/618 (6%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-G 175
           P    VSY   I+G A  G    AL  F+ M +    P D+T  SA  A A        G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 176 KQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            QIH   I  G L  + FV  A  DMY K G +  AR LF  M NRN+V+WN +++  + 
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQT---- 270
           +G+P + I+ +  ++  G  P+ V+      AC                    F+     
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 271 --------GRIDDAGR---LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                   G+   AG+   +F  +  +++V W +M+  Y QNG EE+A   +        
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            P  F +SS +++CA L  L+ G+ +H  AV   +D ++ V+SAL+DMY KCG  +DA  
Sbjct: 318 EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQ 377

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHAD 438
           +F   P RN+V+WN+MI GYA  G    AL ++D +++     P+  T V+V+++C    
Sbjct: 378 IFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGG 437

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L + G   F+++    GI P  +HYAC+++LLGR+   ++A ++I+ +P +P+  +W  L
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C M G  + G +AA  LFEL+P ++G +++LSNM+A+ GRW +   IR  MK+  +K
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K    SW+   N VH F ++D  H     I   LSKL K++Q AG+ P+T+  L+D +EE
Sbjct: 558 KDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEE 617

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
           EK   +  HSEKLALA+ LI  P GV PIRIMKN+R+C DCH   KF S I+GR II+RD
Sbjct: 618 EKESEVFQHSEKLALAFGLICIPPGV-PIRIMKNLRICVDCHRAFKFISGIVGREIIVRD 676

Query: 679 SNRFHHFVGGNCSCKDNW 696
           +NRFHHF    CSC D W
Sbjct: 677 NNRFHHFKQYQCSCGDYW 694



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 176/402 (43%), Gaps = 69/402 (17%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           Y P   F+    L  Y K+G+L  AR LF +MP R++++WNA+++            A+ 
Sbjct: 149 YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT-----------NAVL 197

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D  P+                    E ++ +  +++    P   +  +  NACA  + L 
Sbjct: 198 DGRPL--------------------ETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLS 237

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q HG +V      +V V N++ D Y K     KAR +FD M  RN VSW  M++ Y 
Sbjct: 238 LGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYA 297

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------- 268
           +NG  ++    +   +  G  P +  VS+ L  C                          
Sbjct: 298 QNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIF 357

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SE 317
                     + G ++DA ++F+   +++ V W  MI GY   G  ++AL++F++M+ S 
Sbjct: 358 VASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSG 417

Query: 318 DVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           +  P+  ++ +V++SC++      G ++        G++      + ++D+  + G+ + 
Sbjct: 418 ETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQ 477

Query: 377 AWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQ 417
           A+ V   MP R  +S W +++     +G+        +KL +
Sbjct: 478 AYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFE 519



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 3/167 (1%)

Query: 342 GQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           G+  H +A+ ++       + + L+++Y K  +   A       P   VVS+ + I+G A
Sbjct: 34  GRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAA 93

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           Q+G+ L AL+ +  +L+  L+P+ FTF S   A   A           S++   G  P  
Sbjct: 94  QHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVD 153

Query: 461 DHYAC-MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
              +C  +++  ++  +  A  L   +P++ N + W+ +++   + G
Sbjct: 154 PFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAVMTNAVLDG 199



 Score = 47.8 bits (112), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+  T+   +  +  C  +  + L + L +    +  + N  F+ + L+  Y K G +  
Sbjct: 316 GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANI-FVASALVDMYGKCGCVED 374

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS------VSYNTAIAGF 131
           A  +F + P R++++WNA++  +A  G  Q+   +FD M IR        ++    I   
Sbjct: 375 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM-IRSGETAPNYITLVNVITSC 433

Query: 132 ANKGFSREALQVFSRMQKDRF--EP 154
           +  G +++  ++F  M ++RF  EP
Sbjct: 434 SRGGLTKDGYELFETM-RERFGIEP 457


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/623 (35%), Positives = 349/623 (56%), Gaps = 47/623 (7%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARS---GSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
           A + F    L+   ++N LL+ +A++   G + D R LFD +P  D+VSYNT ++     
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFAC 85

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G    A +VFS M                                          +V   
Sbjct: 86  GDIDGAWRVFSTMPVR---------------------------------------DVTSW 106

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N +    +K G I++A  +F  M  RN VSWN M++    +G      +LF+        
Sbjct: 107 NTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPE---K 163

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
            D +  + ++     TG +  A   F  +  ++ V W  ++ GY +N +  DAL +F  M
Sbjct: 164 TDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 315 LSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           + +  V+P+  ++SSV+  C+ L++L  G+ VH   + L +   + V ++L+ MYCKCG 
Sbjct: 224 VEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGD 283

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            DDA  +F+ M T+++V+WN+MI+GYAQ+G   +A+ L++K+  E + PD  T ++VL+A
Sbjct: 284 LDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTA 343

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C+H  L + G   F+++   + I P +DHY+CM++LL R+  +++AV++I S+P +P+  
Sbjct: 344 CIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPS 403

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
            + TLL+ C +  +++  E AAR L E +P NAG Y+ L+N+YA   RW+DV+ +R  MK
Sbjct: 404 AYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMK 463

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
              V K   YSW+EI    H+F S DR HP+ ++I+++L +L K ++  G+SP+    LH
Sbjct: 464 DNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALH 523

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +E  K + +  HSEKLA+A+ LI    G+T +RI KN+R+CGDCH   K  S I  R 
Sbjct: 524 DVEESLKSQMLMRHSEKLAIAFGLISTSPGMT-LRIFKNLRICGDCHNAAKLISKIEDRE 582

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           IILRD+ RFHHF GG+CSC D W
Sbjct: 583 IILRDTTRFHHFRGGHCSCGDYW 605



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 166/380 (43%), Gaps = 71/380 (18%)

Query: 58  TTFLHNRLLHFYAKS---GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           TT  +N LL  YAK+   G+L  AR LFD +P  D +S+N LLS H   G +     +F 
Sbjct: 37  TTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSCHFACGDIDGAWRVFS 96

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
            MP+RD  S+NT ++G +  G   EA  +F  M              A NA +       
Sbjct: 97  TMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM-------------PARNAVSW------ 137

Query: 175 GKQIHGKIVVGNLGG--NVF----------VRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
              +  +   G++G   N+F          +  A+   Y   G + KA   F  M  RNL
Sbjct: 138 NAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNL 197

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-------------- 267
           VSWN +++GY+KN +    + +F+ M +   + P+  T+S++L  C              
Sbjct: 198 VSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQ 257

Query: 268 ---------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                 + G +DDA +LF  +  KD V W  MI GY Q+G    
Sbjct: 258 WCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRK 317

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALI 365
           A+ LF +M  E V PD  ++ +V+++C        G Q          ++  +   S ++
Sbjct: 318 AIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMV 377

Query: 366 DMYCKCGVTDDAWTVFNMMP 385
           D+ C+ G+ + A  + + MP
Sbjct: 378 DLLCRAGLLERAVNMIHSMP 397



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 40/288 (13%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           N  E     L   ++  Y  +G +  A + F  MP+R+++SWNA+               
Sbjct: 159 NAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAV--------------- 203

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLL 170
                           +AG+     + +AL+VF  M +D   +P   T  S L  C+ L 
Sbjct: 204 ----------------VAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLS 247

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  G+Q+H   +   LG ++ V  +L  MY K G++D A  LFD M+ +++V+WN MIS
Sbjct: 248 ALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMIS 307

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV- 289
           GY ++G  +K I LF++M+  G+ PD +T+  +L AC  TG  D   + F  ++E  N+ 
Sbjct: 308 GYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIE 367

Query: 290 ----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                ++ M+    + G  E A+ + + M  E   P   +  +++++C
Sbjct: 368 PQVDHYSCMVDLLCRAGLLERAVNMIHSMPFE---PHPSAYGTLLTAC 412


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/638 (34%), Positives = 350/638 (54%), Gaps = 37/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+S   +D   +FD MP RD +S+N+ I+G  + G   +A+++F RM  +  E
Sbjct: 235 NALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEE 294

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T +S L ACA+L  L  G+ +HG  V         + N L DMY+   +      +
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKI 354

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           F  M  +N+VSW  MI+ Y + G   K   LFQEM L G  PD   +++ L A       
Sbjct: 355 FRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELL 414

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +++A  +F  +  KD + W T+I GY
Sbjct: 415 KHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGY 474

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           ++N    +A  LF EML + +RP+  +++ ++ + A L+SL  G+ +H  A+  G  +D 
Sbjct: 475 SRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDD 533

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++ALIDMY KCG    A  +F+ +  +N++SW  M+ GY  +G+  +A+AL++++   
Sbjct: 534 FVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVS 593

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + PD+ +F ++L AC H+ L + G   FD++   H I P L HY CM++LL  + ++ +
Sbjct: 594 GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKE 653

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I S+P +P+S IW +LL  C +  ++K  E  A  +FELEP N G Y++L+N+YA 
Sbjct: 654 AYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAE 713

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RWE V  +++ +  + +++    SWIE   KVH F++++R HP+   I E L+++ K+
Sbjct: 714 AERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKR 773

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +QE G  P  K  L         +++C HS KLA+A+ ++    G   IR+ KN RVC  
Sbjct: 774 MQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEG-RLIRVTKNSRVCSH 832

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   KF S +  R IILRDSNRFHHF  G CSC+  W
Sbjct: 833 CHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/474 (29%), Positives = 222/474 (46%), Gaps = 68/474 (14%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           L +A+  L S G    + +Y  ++  C+ V  +E  KR                      
Sbjct: 77  LEEALGLLGSDG--VDDRSYGAVLQLCSEVRSLEGGKRA--------------------- 113

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYN 125
           HF  ++  L   RD  D       +    L+  + + G +++ R +FD+MP + D   + 
Sbjct: 114 HFLVRASSL--GRDGMDN------VLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWT 165

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             ++G+A  G  RE + +F +M      P  YT    L   A L  +  G+ +HG +   
Sbjct: 166 ALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKL 225

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G    V NAL   YAK      A  +FD M +R+++SWN MISG   NG   K I+LF
Sbjct: 226 GFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELF 285

Query: 246 QEMQLLGLNPDEVTVSNILGAC----------------FQTGRIDDAG------------ 277
             M L G   D  T+ ++L AC                 +TG I                
Sbjct: 286 VRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNC 345

Query: 278 -------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                  ++F  + +K+ V WT MI  YT+ G  +    LF EM  E  RPD F+I+S +
Sbjct: 346 SDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSAL 405

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            + A    L HG+ VHG A+  G++  L V++AL++MY KCG  ++A  +F+ + +++++
Sbjct: 406 HAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMI 465

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           SWN++I GY++N    EA +L+ ++L + L+P++ T   +L A       ERG+
Sbjct: 466 SWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGR 518



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/340 (28%), Positives = 156/340 (45%), Gaps = 48/340 (14%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF---VRNALTDMYAKGGEIDKARW 212
           D ++ + L  C+++  L  GK+ H  +   +LG +     +   L  MY K G+++ AR 
Sbjct: 91  DRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARR 150

Query: 213 LFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
           +FD M   + V  W  ++SGY K G  ++ + LF++M   G+ PD  T+S +L      G
Sbjct: 151 VFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLKCIAGLG 210

Query: 272 RIDDAGRLFHVIKEK------------------------------------DNVCWTTMI 295
            I+D G + H + EK                                    D + W +MI
Sbjct: 211 SIED-GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMI 269

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G T NG  + A+ LF  M  E    D  ++ SV+ +CA+L  L+ G+VVHG +V  G  
Sbjct: 270 SGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFI 329

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
               +++ L+DMY  C        +F  M  +NVVSW +MI  Y + G   +   L+ ++
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
             E  +PD F   S L A    +L + G+       +VHG
Sbjct: 390 GLEGTRPDIFAITSALHAFAGNELLKHGK-------SVHG 422



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 5/100 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  Y K G L  AR LFD++  +++ISW  +++ +   G  +D  ALF++M + 
Sbjct: 534 FVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVS 593

Query: 120 ----DSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEP 154
               D+ S++  +   ++ G   E  + F  M+K+ + EP
Sbjct: 594 GIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEP 633


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/573 (38%), Positives = 335/573 (58%), Gaps = 46/573 (8%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           +A +A+ G    ++ VF+ +  D F     T    L +  +LL +  GK +HG I+   L
Sbjct: 112 VAFYASSGDIDSSVSVFNGI-GDYF-----TFPFVLKSSVELLSVWMGKCVHGLILRIGL 165

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +++V  +L  +Y K GEI+ A  +FD M  R++ SWN +++GY K+G           
Sbjct: 166 QFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG----------- 214

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                              C     ID A  +F  +  ++ V WTTMI GY+Q+G  + A
Sbjct: 215 -------------------C-----IDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQA 250

Query: 308 LILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           L LF+EM+ ED  VRP+  +I SV+ +CA+L++L  G+ +H  A  +G++ +  V  AL 
Sbjct: 251 LSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALT 310

Query: 366 DMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
            MY KCG   DA   F+ +    +N+++WN+MI  YA  G  L+A++ + +++Q  ++PD
Sbjct: 311 AMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPD 370

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF  +LS C H+ L + G  +F+ +S  + I P ++HYAC+ +LLGR+  + +A  L+
Sbjct: 371 DITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLV 430

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             +P      IW +LL+ C    +++  E AAR LF LEP N G Y++LSNMYA  GRW+
Sbjct: 431 GEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQ 490

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           +V  +R+ +KS+  KK    SWIEI+ K H F+  D +HP+ + IY  L  L +K++ AG
Sbjct: 491 EVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAG 550

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P+T  VLHD  EEEK  ++  HSEKLA+A+ ++  P   T +R+ KN+R+CGDCH  M
Sbjct: 551 YFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTP-AETVLRVTKNLRICGDCHTAM 609

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            F S+I GR +I+RD NRFHHF GG CSC D W
Sbjct: 610 VFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/226 (37%), Positives = 131/226 (57%), Gaps = 4/226 (1%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++   L+  Y K G++  A  +FD M +RD+ SWNALL+ + +SG +    A+F++MP R
Sbjct: 170 YVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWR 229

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD--RFEPTDYTHVSALNACAQLLDLRRGKQ 177
           + VS+ T I+G++  G +++AL +F  M K+     P   T +S L ACAQL  L RG+Q
Sbjct: 230 NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQ 289

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKN 235
           IH       L  N  V  ALT MYAK G +  AR  FD++  N +NL++WN MI+ Y   
Sbjct: 290 IHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASY 349

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281
           G   + +  F+EM   G+ PD++T + +L  C  +G +D   + F+
Sbjct: 350 GHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFN 395


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/644 (33%), Positives = 364/644 (56%), Gaps = 37/644 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   N+L+  +A+ G ++    +F +MP+RD VS+N+ I+G+ + G    +L  F  MQ
Sbjct: 160 DIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQ 219

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +   ++ +  L AC+    LR GK+IH +++   L  +V V+ +L DMYAK G +D
Sbjct: 220 ASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMD 279

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGAC 267
            A  LFD++ ++++V+WN MI GY  N Q  +     ++MQ  G L+PD +T+ N+L  C
Sbjct: 280 YAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPC 339

Query: 268 FQ-----------------------------------TGRIDDAGRLFHVIKEKDNVCWT 292
            Q                                    G++  A  LF  + E++ + W 
Sbjct: 340 AQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWN 399

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  YT+NG+   A+ LF ++ ++ ++PD  +I+S++ + A+LASL   + +HG    L
Sbjct: 400 AMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKL 459

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            +D +  VS++++ MY KCG    A  +F+ M  ++V+SWN++I  YA +G    ++ L+
Sbjct: 460 KLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELF 519

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++ ++  +P+  TFVS+L +C  A L   G  +F+S+   + I P ++HY C+++L+GR
Sbjct: 520 SEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGR 579

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           + ++D A + I+ +P  P + IW +LL+    KGD++  E+AA H+  LE  N G Y++L
Sbjct: 580 TGNLDHAKNFIEEMPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLL 639

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYA  GRWEDV  I+  MK + ++K    S +++ +K  +FV++DR+  E  ++Y+ L
Sbjct: 640 SNMYAEAGRWEDVERIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVL 699

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             + KK+ E  +  +         E+++  S   HS +LA+ + LI    G  P+ + KN
Sbjct: 700 DIISKKIGEDVYVHSLTKFRPSDLEKKRANSAKSHSLRLAICFGLISTTIG-NPVLVRKN 758

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IR+C  CH F K  S+   R II+RDS  FHHF GG+CSC D W
Sbjct: 759 IRICEACHRFAKRISETTKREIIVRDSKIFHHFNGGHCSCGDYW 802



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 139/462 (30%), Positives = 231/462 (50%), Gaps = 52/462 (11%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R+ +S    LS++   G +++   LF+ M   D+  +N  I GF + G   +A+  + RM
Sbjct: 58  RNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRM 117

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +       ++T+   + AC  L DL  G+++HGK++   L  ++++ N+L  MYAK G I
Sbjct: 118 EFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCI 177

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A  +F  M  R+LVSWN MISGY+  G   + +  F+EMQ  G+  D  +V  ILGAC
Sbjct: 178 ESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGAC 237

Query: 268 --------------------------FQT---------GRIDDAGRLFHVIKEKDNVCWT 292
                                      QT         GR+D A RLF  I +K  V W 
Sbjct: 238 SLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWN 297

Query: 293 TMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            MI GY+ N +  ++     +M     + PD  ++ +++  CA+L ++  G+ VHG A+ 
Sbjct: 298 AMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIR 357

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G    L++ +AL+DMY +CG    A  +F  M  RN++SWN+MI  Y +NG++ +A+ L
Sbjct: 358 NGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTL 417

Query: 412 YDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYA------ 464
           +  L  + LKPD+ T  S+L A    A L E  Q        +HG    L   +      
Sbjct: 418 FQDLCNKTLKPDATTIASILPAYAELASLREAEQ--------IHGYVTKLKLDSNTFVSN 469

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            ++ + G+  ++ +A ++   +  K + + W+T++   A+ G
Sbjct: 470 SIVFMYGKCGNLLRAREIFDRMTFK-DVISWNTVIMAYAIHG 510



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 159/344 (46%), Gaps = 40/344 (11%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y + G +  A  LF+ M   +   WN+MI G++ NG     +D +  M+  G+  D  T 
Sbjct: 70  YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTY 129

Query: 261 SNILGAC-----------------------------------FQTGRIDDAGRLFHVIKE 285
             ++ AC                                    + G I+ A  +F  +  
Sbjct: 130 PFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPV 189

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           +D V W +MI GY   G    +L  F EM +  ++ D+FS+  ++ +C+    L +G+ +
Sbjct: 190 RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRNGKEI 249

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H + +   ++ D++V ++L+DMY KCG  D A  +F+ +  +++V+WN+MI GY+ N Q 
Sbjct: 250 HCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQS 309

Query: 406 LEALALYDKLLQEN--LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
            E+ A Y + +QE   L PD  T +++L  C   +    G++     +  +G  P L   
Sbjct: 310 FESFA-YVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKS-VHGFAIRNGFLPHLVLE 367

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             ++++ G    +  A  L   +  + N + W+ +++     G+
Sbjct: 368 TALVDMYGECGKLKPAECLFGQMNER-NLISWNAMIASYTKNGE 410



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 126/261 (48%), Gaps = 32/261 (12%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C ++  + L K +      N + P+   L   L+  Y + GKL  A  LF +M  R
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIRNGFLPHLV-LETALVDMYGECGKLKPAECLFGQMNER 393

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ISWNA+++++ ++G                                +R+A+ +F  + 
Sbjct: 394 NLISWNAMIASYTKNGE-------------------------------NRKAMTLFQDLC 422

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P   T  S L A A+L  LR  +QIHG +    L  N FV N++  MY K G + 
Sbjct: 423 NKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLL 482

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +AR +FDRM  ++++SWN +I  Y  +G  +  I+LF EM+  G  P+  T  ++L +C 
Sbjct: 483 RAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCS 542

Query: 269 QTGRIDDAGRLFHVIKEKDNV 289
             G +++    F+ +K   N+
Sbjct: 543 VAGLVNEGWEYFNSMKRDYNI 563



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 39/234 (16%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           + TF+ N ++  Y K G L  AR++FD+M  +D+ISW                       
Sbjct: 463 SNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVISW----------------------- 499

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                   NT I  +A  GF R ++++FS M++  FEP   T VS L +C+    +  G 
Sbjct: 500 --------NTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGW 551

Query: 177 QIHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +    +    N+   +     + D+  + G +D A+   + M    L     +    L  
Sbjct: 552 EYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEM---PLAPTARIWGSLLTA 608

Query: 236 GQPKKCIDLFQ--EMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRL-FHVIKE 285
            + K  ++L +     +L L  D      +L   + + GR +D  R+ FH+ KE
Sbjct: 609 SRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKE 662


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 335/602 (55%), Gaps = 40/602 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L  A+A S  +     L    P   +V Y +AI   +++G    AL + S M      PT
Sbjct: 73  LQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPT 132

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T  S+L AC     L  G+ +H       L G+ +V  AL  MYA+GG+ D AR LFD
Sbjct: 133 SHTLSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 189

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M +                                   P  V V+ +L    + G +DD
Sbjct: 190 EMPD-----------------------------------PHVVPVTAMLTCYAKMGALDD 214

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  KD +CW  MI GYTQ+G+  +AL LF  ML   V PD+ +I   +S+ A+
Sbjct: 215 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 336 LASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           L +   G+ +H        V  +  V +ALIDMYCKCG  +DA +VFN +  +++V WN+
Sbjct: 275 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 334

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MINGYA +G   +AL ++ +L  + L P   TF+ +L+AC H+ L + G   F S+   +
Sbjct: 335 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 394

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            I P ++HY CM++LLGR+  +++A  L++S+   P++++W +LL+ C +  ++  G+  
Sbjct: 395 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 454

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A +L      N+G YI+LSN+YAA G WE+VA +RS MK+  ++K    S IE+  KV++
Sbjct: 455 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 514

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           FV+ D +HP T+ IY  L K+   ++E G  P T+LVLHD  E  K K++  HSEKLA+A
Sbjct: 515 FVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVA 574

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G T I+I+KN+R C DCH  +K  S I GR I+ RD NRFHHFV G+C+C D
Sbjct: 575 FGLISTAPGET-IKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGD 633

Query: 695 NW 696
            W
Sbjct: 634 YW 635



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 172/337 (51%), Gaps = 10/337 (2%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           +++   LL  YA+ G    AR LFD+MP   ++   A+L+ +A+ G++ D R LFD MP 
Sbjct: 165 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 224

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D + +N  I G+   G   EAL++F  M +   +P +   + AL+A AQL     G+ +
Sbjct: 225 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 284

Query: 179 HGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           H  +     +  N  V  AL DMY K G ++ A  +F+ + ++++V WN MI+GY  +G 
Sbjct: 285 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD 344

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WT 292
            +K +++F +++  GL P ++T   +L AC  +G +D+  + F  ++E+  +      + 
Sbjct: 345 SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG 404

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            M+    + G  E+A  L   M    + PD     S++++C    ++  GQ +    V  
Sbjct: 405 CMVDLLGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 461

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           G+ +  +    L ++Y   G  ++   V +MM    +
Sbjct: 462 GLANSGMY-ILLSNIYAAVGNWEEVARVRSMMKASGI 497



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 16/200 (8%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ++ +++ CA   +L     +H  AV  GVD D  V   L   Y      D   T+  + P
Sbjct: 38  VAGLLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTP 94

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
               V + S I+ ++  G  L ALAL  ++L   L P S T  S L AC H     R  +
Sbjct: 95  DPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-HGLALGRALH 153

Query: 446 HFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            +    A+ G     D Y    ++ +  R  D D A  L   +P  P+ +  + +L+  A
Sbjct: 154 AYAFKLALAG-----DSYVATALLGMYARGGDADAARALFDEMP-DPHVVPVTAMLTCYA 207

Query: 504 MKGDIKHGEMAARHLFELEP 523
             G +      AR LF+  P
Sbjct: 208 KMGALDD----ARELFDGMP 223


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 335/602 (55%), Gaps = 40/602 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L  A+A S  +     L    P   +V Y +AI   +++G    AL + S M      PT
Sbjct: 72  LQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPT 131

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T  S+L AC     L  G+ +H       L G+ +V  AL  MYA+GG+ D AR LFD
Sbjct: 132 SHTLSSSLPACH---GLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 188

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M +                                   P  V V+ +L    + G +DD
Sbjct: 189 EMPD-----------------------------------PHVVPVTAMLTCYAKMGALDD 213

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  KD +CW  MI GYTQ+G+  +AL LF  ML   V PD+ +I   +S+ A+
Sbjct: 214 ARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 336 LASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           L +   G+ +H        V  +  V +ALIDMYCKCG  +DA +VFN +  +++V WN+
Sbjct: 274 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 333

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MINGYA +G   +AL ++ +L  + L P   TF+ +L+AC H+ L + G   F S+   +
Sbjct: 334 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 393

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            I P ++HY CM++LLGR+  +++A  L++S+   P++++W +LL+ C +  ++  G+  
Sbjct: 394 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 453

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A +L      N+G YI+LSN+YAA G WE+VA +RS MK+  ++K    S IE+  KV++
Sbjct: 454 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 513

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           FV+ D +HP T+ IY  L K+   ++E G  P T+LVLHD  E  K K++  HSEKLA+A
Sbjct: 514 FVAGDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVA 573

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + LI    G T I+I+KN+R C DCH  +K  S I GR I+ RD NRFHHFV G+C+C D
Sbjct: 574 FGLISTAPGET-IKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGD 632

Query: 695 NW 696
            W
Sbjct: 633 YW 634



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 172/337 (51%), Gaps = 10/337 (2%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           +++   LL  YA+ G    AR LFD+MP   ++   A+L+ +A+ G++ D R LFD MP 
Sbjct: 164 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 223

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D + +N  I G+   G   EAL++F  M +   +P +   + AL+A AQL     G+ +
Sbjct: 224 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 283

Query: 179 HGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           H  +     +  N  V  AL DMY K G ++ A  +F+ + ++++V WN MI+GY  +G 
Sbjct: 284 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD 343

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WT 292
            +K +++F +++  GL P ++T   +L AC  +G +D+  + F  ++E+  +      + 
Sbjct: 344 SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG 403

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            M+    + G  E+A  L   M    + PD     S++++C    ++  GQ +    V  
Sbjct: 404 CMVDLLGRAGLIEEAFHLVQSM---TIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAG 460

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           G+ +  +    L ++Y   G  ++   V +MM    +
Sbjct: 461 GLANSGMY-ILLSNIYAAVGNWEEVARVRSMMKASGI 496



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 16/200 (8%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ++ +++ CA   +L     +H  AV  GVD D  V   L   Y      D   T+  + P
Sbjct: 37  VAGLLTGCA---TLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTP 93

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
               V + S I+ ++  G  L ALAL  ++L   L P S T  S L AC H     R  +
Sbjct: 94  DPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPAC-HGLALGRALH 152

Query: 446 HFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            +    A+ G     D Y    ++ +  R  D D A  L   +P  P+ +  + +L+  A
Sbjct: 153 AYAFKLALAG-----DSYVATALLGMYARGGDADAARALFDEMP-DPHVVPVTAMLTCYA 206

Query: 504 MKGDIKHGEMAARHLFELEP 523
             G +      AR LF+  P
Sbjct: 207 KMGALDD----ARELFDGMP 222


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/720 (32%), Positives = 390/720 (54%), Gaps = 46/720 (6%)

Query: 16  SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGK 74
            R  A+   A +  V +   +  ++L +R+QS    +N Y   TT     +L   A+  +
Sbjct: 227 GRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSY---TTV---GVLQVCAELAQ 280

Query: 75  LFYARDLFD---KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           L + R+L     K      I  NALL  +AR G V     +F ++  +D +S+N+ ++ +
Sbjct: 281 LNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCY 340

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                  EA+  F  M ++ F P     VS L+A   L  L  G+++H   V   L  ++
Sbjct: 341 VQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDL 400

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            + N L DMY K   ++ +  +FDRM  ++ VSW  +I+ Y ++ +  + I  F+  Q  
Sbjct: 401 QIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKE 460

Query: 252 GLNPDEVTVSNILGACF----------------------------------QTGRIDDAG 277
           G+  D + + +IL AC                                   + G +  A 
Sbjct: 461 GIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYAL 520

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            +F ++ +KD V WT+M+  + +NG   +A+ LF +ML+  ++PD  ++  ++ + A L+
Sbjct: 521 NIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLS 580

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           SL  G+ +HG  +      +  V S+L+DMY  CG  + A  VF+    ++VV W +MIN
Sbjct: 581 SLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMIN 640

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
               +G   +A+ ++ ++L+  + PD  +F+++L AC H+ L + G+ + D + + + + 
Sbjct: 641 ATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQ 700

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P  +HYAC+++LLGRS   ++A   IKS+P +P S++W  LL  C +  + +   +A   
Sbjct: 701 PWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDK 760

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           L ELEP N G Y+++SN++A  G+W +V  IR+ M  + ++K  A SWIEI N VH F +
Sbjct: 761 LLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTA 820

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAG-FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
            D +H +++ I+ +L+++ +KL+  G +  +T  VLHD  EEEK+  +  HSE+LA+++ 
Sbjct: 821 RDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFG 880

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           LI    G TP+RI KN+RVCGDCH F K  S +  R I++RD+NRFHHF GG CSC D W
Sbjct: 881 LISTASG-TPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 148/543 (27%), Positives = 236/543 (43%), Gaps = 118/543 (21%)

Query: 7   LRQAIDTLYSR---GQAATEEAYTQLVLDCTRVND-VELAKRLQSHMDLN--FYEPNTTF 60
           LR+A+  L +R   G+A     +   VLD   V   V   ++L +H        + +  F
Sbjct: 35  LREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGF 94

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG----SVQDLRALFDKM 116
           L  +LL  Y K G+L  A  LFD MP R + SWNAL+ A   SG    +V   RA+    
Sbjct: 95  LATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASE 154

Query: 117 PI---------------------------------------RDSVSYNTAIAGFANKGFS 137
           P+                                       R ++  N  +  +A  G  
Sbjct: 155 PVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLL 214

Query: 138 REALQVFS--------------------------------RMQKDRFEPTDYTHVSALNA 165
             AL+VF                                 RMQ D F    YT V  L  
Sbjct: 215 DSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQV 274

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           CA+L  L  G+++H  ++      N+   NAL  MYA+ G +D A  +F  + +++ +SW
Sbjct: 275 CAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISW 333

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR------------- 272
           N M+S Y++N    + ID F EM   G NPD   + ++L A    GR             
Sbjct: 334 NSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVK 393

Query: 273 ----------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                 ++ + R+F  ++ KD+V WTT+I  Y Q+ +  +A+  
Sbjct: 394 QRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGK 453

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F     E ++ D   + S++ +C+ L S+   + VH  A+  G+  DL++ + +ID+Y +
Sbjct: 454 FRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGE 512

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG    A  +F M+  +++V+W SM+N +A+NG   EA+AL+ K+L   ++PDS   V +
Sbjct: 513 CGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGI 572

Query: 431 LSA 433
           L A
Sbjct: 573 LGA 575



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 12/239 (5%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED----VRPDKF 324
           + GR+ DA RLF  +  +    W  +I     +G   +A+ ++  M + +      PD  
Sbjct: 105 KCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGC 164

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-M 383
           +++SV+ +C        G  VHG AV  G+D   LV++AL+ MY KCG+ D A  VF  M
Sbjct: 165 TLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWM 224

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
              R+V SWNS I+G  QNG  LEAL L+ ++  +    +S+T V VL  C  A+L +  
Sbjct: 225 RDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVC--AELAQ-- 280

Query: 444 QNHFDSISAVHGITPSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            NH   + A      +  +  C  ++ +  R   VD A+ + + +  K + + W+++LS
Sbjct: 281 LNHGRELHAALLKCGTEFNIQCNALLVMYARCGWVDSALRVFREIGDK-DYISWNSMLS 338



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 338 SLYHGQVVHGKAVV---LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           ++  G+ +H  AV    LG DD   +++ L+ MY KCG   DA  +F+ MP R V SWN+
Sbjct: 70  AVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNA 129

Query: 395 MINGYAQNGQDLEALALYDKLLQE----NLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           +I     +G   EA+ +Y  +          PD  T  SVL AC  A+   R  +    +
Sbjct: 130 LIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKAC-GAEGDGRCGSEVHGL 188

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +   G+  S      ++ +  +   +D A+ + + +    +   W++ +S C   G
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNG 244


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 329/569 (57%), Gaps = 36/569 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           +  CA    L  G++IH  +  G L    F+ N L DMY K G + +A+ +FD M ++N+
Sbjct: 48  IRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNV 107

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
            SW ++++G++++G+  + I LF  M   G  PD V +   + +C               
Sbjct: 108 FSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSA 167

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G I +A  +F  + EK+ + W+TMI  + QN   ++A
Sbjct: 168 AASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEA 227

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L+ F  M  E +  D+ +  SV+ +   + +L  G+ +H + V  G+D  ++V + L++M
Sbjct: 228 LLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNM 287

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG  DDA  VF+ M  +NVVSWN+M+  Y QNG+  EALAL+D +  E ++P+  TF
Sbjct: 288 YGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITF 347

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           V++L  C H+  F+   +HF  +    GITP   H+ C+I++LGRS  +++A +LI+++P
Sbjct: 348 VTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMP 407

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
              ++++W++LL  C    D      AA   F+ EP  A  YIMLSN+YAA  +W++ A 
Sbjct: 408 VPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEAAK 467

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +R  M+   V+K A  SWIEID +VH+FV+ D  HP+   I++ L +L+ +++  G+ P+
Sbjct: 468 VRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPD 527

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            K+V+H  +EEEK + + YHSEKLA+A+ +   P   TP+ I+KN+RVC DCH  +KF S
Sbjct: 528 RKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPP-RTPLCIVKNLRVCSDCHSAIKFIS 586

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + GR I +RDSNRFHHF  G CSC D W
Sbjct: 587 GVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 178/428 (41%), Gaps = 71/428 (16%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           +R+A+D L   G A       QL+  C     +E  +R+   MD    +    FL N L+
Sbjct: 25  IREAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLD-RPRFLSNLLV 83

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             Y K G L  A+ +                               FD M  ++  S+  
Sbjct: 84  DMYGKCGSLVEAKRV-------------------------------FDAMQHKNVFSWTM 112

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            +AGF   G   EA+Q+F RM ++   P     +  +++C     L +G++IH       
Sbjct: 113 LMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCG 172

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           +  ++   NA+ +MY K G I +A  +F RM  +N++SW+ MI+ + +N    + +  F+
Sbjct: 173 MDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFK 232

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRI--------------------------------- 273
            MQ  G+  D +T  ++L A    G +                                 
Sbjct: 233 LMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCG 292

Query: 274 --DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
             DDA  +F  + EK+ V W  M+  Y QNG+  +AL LF+ M  E VRP+  +  +++ 
Sbjct: 293 SPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILY 352

Query: 332 SCAKLASLYHGQVVHGKAVV--LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RN 388
            C+  +  +   V H   +    G+    +    LIDM  + G  ++A  +   MP   +
Sbjct: 353 CCSH-SGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPAD 411

Query: 389 VVSWNSMI 396
            V W S++
Sbjct: 412 AVLWTSLL 419



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 137/250 (54%), Gaps = 8/250 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+++ NA+++ + + GS+ +  A+F +MP ++ +S++T IA F     + EAL  F  MQ
Sbjct: 176 DLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQ 235

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  E    T+VS L+A   +  L  GK +H +IV   L  ++ V N L +MY K G  D
Sbjct: 236 QEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPD 295

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FD M  +N+VSWN M++ Y +NG+ ++ + LF  M L G+ P+++T   IL  C 
Sbjct: 296 DARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCS 355

Query: 269 QTGRIDDAGRLFHVIKE-----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
            +G+  DA   F  +++        V +  +I    ++GK E+A  L   M    V  D 
Sbjct: 356 HSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAM---PVPADA 412

Query: 324 FSISSVVSSC 333
              +S++ +C
Sbjct: 413 VLWTSLLCAC 422



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 2/175 (1%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           +  ++  CA   +L  G+ +H       +D    +S+ L+DMY KCG   +A  VF+ M 
Sbjct: 44  LEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQ 103

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            +NV SW  ++ G+ Q+G+ +EA+ L+ ++ QE   PD    +  + +C  A    +G+ 
Sbjct: 104 HKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGRE 163

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
              S +A  G+   L     +IN+ G+   + +A  +   +P K N + WST+++
Sbjct: 164 -IHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEK-NVISWSTMIA 216


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 328/580 (56%), Gaps = 38/580 (6%)

Query: 154 PTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P  Y H  S L +C     L  G+Q+HG+++V  LG +  +   L D+YA  G +  AR 
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV------------ 260
           LFD M  RN+  WN++I  Y ++G  +  I L++ M   G+ PD  T             
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 261 --------SNILGACF---------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                     +LG  +               + G +DDA  +F  I+ +D+V W +MI  
Sbjct: 179 LETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAA 238

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y QNG+  +AL L  +M +  V P   ++ S +S+ A  A+L  G+ +HG     G D  
Sbjct: 239 YGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL-L 416
             + ++L+DMY K G    A  +F  +  R +VSWN+MI GY  +G   EAL L++K+ +
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRV 358

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
           +  + PD+ TFV VLSAC H  + +  +  F  +  V+ I P++ H+ C++++LG +   
Sbjct: 359 EAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRF 418

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           ++A DLIK +P +P+S IW  LL+ C +  +++ GE+A + L ELEP +AG Y++LSN+Y
Sbjct: 419 EEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIY 478

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A  G+WE  A +R  M ++ +KK    SWIE+  K H F+  D +HP +  IYEEL +L 
Sbjct: 479 AQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLE 538

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
             + +AG+ P+T  V HD  ++EK   +  HSE+LA+A+ LI  P G T + + KN+RVC
Sbjct: 539 GLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSG-TKLLVTKNLRVC 597

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH+ +K  S I+ R II+RD NR+HHFV G CSCKD W
Sbjct: 598 EDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 181/385 (47%), Gaps = 42/385 (10%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRA 111
           PN+   +  +L     S  L   R L  ++ +     D +    L+  +A  G V   R 
Sbjct: 59  PNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARR 118

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LFD MP R+   +N  I  +A  G    A+Q++  M     EP ++T+  AL ACA LLD
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLD 178

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+++H +++  + G ++FV   L DMYAK G +D AR +FDR+  R+ V WN MI+ 
Sbjct: 179 LETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAA 238

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTV------------------------------- 260
           Y +NG+P + + L ++M   G+ P   T+                               
Sbjct: 239 YGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQ 298

Query: 261 ----SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
               ++++    ++G +  A  LF  + +++ V W  MI GY  +G  ++AL LFN+M  
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRV 358

Query: 317 E-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVT 374
           E  V PD  +   V+S+C     +   +   G  V V  +   +   + L+D+    G  
Sbjct: 359 EAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRF 418

Query: 375 DDAWTVFNMMPTR-NVVSWNSMING 398
           ++A+ +   MP + +   W +++NG
Sbjct: 419 EEAYDLIKGMPMQPDSGIWGALLNG 443



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 16/195 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RF 152
            +L+  +A+SG VQ  R LF+++  R+ VS+N  I G+   G   EAL++F++M+ + + 
Sbjct: 303 TSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQV 362

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            P + T V  L+AC     ++  K+  G +V V ++   V     L D+    G  ++A 
Sbjct: 363 TPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAY 422

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDL--FQEMQLLGLNPDE----VTVSNIL 264
            L   M  +     +  I G L NG +  K ++L      +L+ L P++    V +SNI 
Sbjct: 423 DLIKGMPMQP----DSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIY 478

Query: 265 GACFQTGRIDDAGRL 279
               Q+G+ + A R+
Sbjct: 479 A---QSGKWEKAARV 490


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 346/627 (55%), Gaps = 38/627 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L  Y + G +  A+ ++ +MP R II+ N+++      G V +   LFD+M  +D V
Sbjct: 283 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 342

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           +++  IA F       EA++ F  M K      +   VSAL+ACA LL +  GK IH   
Sbjct: 343 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLS 402

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +       + ++NAL  MY+K G+I  AR LFD     +L+SWN MISGYLK        
Sbjct: 403 LKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK-------- 454

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                         +D+A  +F  + EKD V W++MI GY QN 
Sbjct: 455 ---------------------------CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 487

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             ++ L LF EM     +PD+ ++ SV+S+CA+LA+L  G+ VH      G+  ++++ +
Sbjct: 488 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGT 547

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
            LIDMY KCG  + A  VF  M  + + +WN++I G A NG    +L ++  + + ++ P
Sbjct: 548 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 607

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  TF+ VL AC H  L + GQ+HF S+   H I P++ HY CM++LLGR+  + +A +L
Sbjct: 608 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 667

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           +  +P  P+   W  LL  C   GD + G    R L EL+P + G +++LSN+YA+ G+W
Sbjct: 668 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKW 727

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           +DV  IR  M    V K    S IE +  +H+F++ D+THP+ + I + L ++  KL+  
Sbjct: 728 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLE 787

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHL 661
           G++P+   VL D  EEEK  ++  HSEKLA+A+ LI   P   TPIRIMKN+R+C DCH 
Sbjct: 788 GYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP--TPIRIMKNLRICNDCHT 845

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGG 688
             K  S    R I++RD +RFHHF  G
Sbjct: 846 AAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 184/363 (50%), Gaps = 10/363 (2%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  V + K + S + L     +   L N L++ Y+K G +  AR LFD+  L D+IS
Sbjct: 386 CANLLVVNMGKLIHS-LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLIS 444

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+++S + +   V + +A+FD MP +D VS+++ I+G+A      E L +F  MQ   F
Sbjct: 445 WNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGF 504

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P + T VS ++ACA+L  L +GK +H  I    L  NV +   L DMY K G ++ A  
Sbjct: 505 KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 564

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F  M  + + +WN +I G   NG  +  +D+F  M+   + P+E+T   +LGAC   G 
Sbjct: 565 VFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGL 624

Query: 273 IDDAGRLFHVI----KEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +D+    F+ +    K + NV  +  M+    + GK ++A  L N M    + PD  +  
Sbjct: 625 VDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM---PMTPDVATWG 681

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           +++ +C K      G+ V  K + L  D D      L ++Y   G  DD   +  MM   
Sbjct: 682 ALLGACKKHGDSEMGRRVGRKLIELQPDHDGF-HVLLSNIYASKGKWDDVLEIRGMMTKH 740

Query: 388 NVV 390
            V+
Sbjct: 741 RVL 743



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 189/403 (46%), Gaps = 41/403 (10%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A  ++  M  +     +YT+   + AC+        KQ+H  ++      +V+VRN L +
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-V 258
            ++    +  A  +F+  +  + VSWN +++GY++ G  ++   ++ +M      P+  +
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM------PERSI 310

Query: 259 TVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
             SN +   F   G + +A +LF  + EKD V W+ +I  + QN   E+A+  F  M   
Sbjct: 311 IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKI 370

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V  D+    S +S+CA L  +  G+++H  ++ +G +  + + +ALI MY KCG    A
Sbjct: 371 GVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVA 430

Query: 378 WTVFNMMPTRNVVSWNS-------------------------------MINGYAQNGQDL 406
             +F+     +++SWNS                               MI+GYAQN    
Sbjct: 431 RKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFD 490

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           E LAL+ ++     KPD  T VSV+SAC      E+G+     I   +G+T ++     +
Sbjct: 491 ETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKR-NGLTINVILGTTL 549

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           I++  +   V+ A+++   +  K  S  W+ L+   AM G ++
Sbjct: 550 IDMYMKCGCVETALEVFYGMIEKGIS-TWNALILGLAMNGLVE 591



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 146/357 (40%), Gaps = 73/357 (20%)

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y Q      A  L+  MLS  +  D ++   ++ +C+   S +  + VH   + LG D 
Sbjct: 187 AYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDS 246

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD--- 413
           D+ V + LI+ +  C    DA  VFN     + VSWNS++ GY + G   EA  +Y    
Sbjct: 247 DVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMP 306

Query: 414 ------------------------KLLQENLKPDSFTFVSVLSACLHADLFERGQNHF-- 447
                                   KL  E L+ D  T+ ++++     +++E     F  
Sbjct: 307 ERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVG 366

Query: 448 --------DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWS 496
                   D + AV  ++      AC   L+     +  ++ L    +S  +  N+LI+ 
Sbjct: 367 MHKIGVMVDEVVAVSALS------ACANLLVVNMGKLIHSLSLKIGTESYINLQNALIY- 419

Query: 497 TLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            + S C   GDI    M AR LF E   ++   +  + + Y  C   ++  +I  SM  K
Sbjct: 420 -MYSKC---GDI----MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK 471

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN-TKLV 611
           +V      SW    + +  +   D        +++E   L +++Q +GF P+ T LV
Sbjct: 472 DV-----VSW---SSMISGYAQND--------LFDETLALFQEMQMSGFKPDETTLV 512


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/663 (33%), Positives = 367/663 (55%), Gaps = 45/663 (6%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           +R+N  E    L   M ++  +P+  F    LL  + K   L Y + L +   +   +  
Sbjct: 111 SRINCSESGVSLYKLMLVHNIKPDG-FTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDS 169

Query: 94  N-----ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           N       +   +  G V   R +FD     + V++N  ++G+       E+ ++F  M+
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEME 229

Query: 149 K--DRFEPTDYTHVSALNACAQLLDLRRGKQIHGK-IVVGNLGGNVFVRNALTDMYAKGG 205
           K  +   P   T V  L+AC++L DL  GK I+ K I  G +  N+ + NAL DM+A  G
Sbjct: 230 KKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCG 289

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           E+D AR +FD M  R+++SW  +++G+                                 
Sbjct: 290 EMDAARGVFDEMKTRDVISWTSIVTGFA-------------------------------- 317

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
               T RID A + F  + E+D V WT MI GY +  + ++ L LF +M   +V+PD+F+
Sbjct: 318 ---NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFT 374

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           + S++++CA L +L  G+          + +D  + +ALIDMY KCG  + A  +FN M 
Sbjct: 375 MVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ 434

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            ++  +W +MI G A NG   EAL ++  +L+ ++ PD  T++ V+ AC H  L  +G++
Sbjct: 435 KKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKH 494

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            F +++  HGI P+L HY CM++LLGR+  + +A+++I ++P KPNS++W +LL  C + 
Sbjct: 495 FFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVH 554

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            +++  EMAA  + ELEP N   Y++L N+YAAC +W+++ ++R  M  + +KK    S 
Sbjct: 555 KNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSL 614

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           +E++  V++FV+ D++HP+++ IY +L  + + L  AG+SP+T  V  D  EE+K  ++ 
Sbjct: 615 MEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALY 674

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+AY LI    GVT IRI+KN+R+C DCH      S +  R +I+RD  RFHHF
Sbjct: 675 MHSEKLAIAYALISSGKGVT-IRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHF 733

Query: 686 VGG 688
             G
Sbjct: 734 RHG 736



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 183/427 (42%), Gaps = 80/427 (18%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMYAK-GGEIDKARWLFDRM 217
           +S L  C  + ++    QIH + +   L  N +F+   +     K  G++  AR +FD +
Sbjct: 39  ISLLETCNTMYEI---NQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEI 95

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ-------- 269
              ++  WN MI GY +    +  + L++ M +  + PD  T   +L    +        
Sbjct: 96  PQPSVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGK 155

Query: 270 ----------------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G ++ A ++F +    + V W  ++ GY + 
Sbjct: 156 VLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRF 215

Query: 302 GKEEDALILFNEMLS--EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDL 358
            + E++  LF EM    E V P+  ++  ++S+C+KL  L  G+ ++ K +  G V+ +L
Sbjct: 216 KRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNL 275

Query: 359 LVSSALIDMYCKCGVTDDA--------------WT-----------------VFNMMPTR 387
           ++ +ALIDM+  CG  D A              WT                  F+ MP R
Sbjct: 276 ILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPER 335

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           + VSW +MI+GY +  +  E L L+  +   N+KPD FT VS+L+AC H    E G+   
Sbjct: 336 DYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAK 395

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             I   + I         +I++  +  +V+KA  +   +  K +   W+ ++   A  G 
Sbjct: 396 TYIDK-NKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEM-QKKDKFTWTAMIVGLANNG- 452

Query: 508 IKHGEMA 514
             HGE A
Sbjct: 453 --HGEEA 457



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 156/312 (50%), Gaps = 9/312 (2%)

Query: 252 GLNPDEVTVSNILGACF--QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           GL+ + + ++ ++  C   ++G +  A ++F  I +     W TMI GY++    E  + 
Sbjct: 62  GLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSRINCSESGVS 121

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMY 368
           L+  ML  +++PD F+   ++    K  +L +G+V+   AV+ G +D +L V    I ++
Sbjct: 122 LYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLF 181

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ--ENLKPDSFT 426
             CG+ + A  +F+M     VV+WN +++GY +  +  E+  L+ ++ +  E + P+S T
Sbjct: 182 SLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVT 241

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
            V +LSAC        G+  ++       + P+L     +I++     ++D A  +   +
Sbjct: 242 LVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEM 301

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
             + + + W+++++  A    I   ++A ++  ++   +   +  + + Y    R+++V 
Sbjct: 302 KTR-DVISWTSIVTGFANTCRI---DLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVL 357

Query: 547 SIRSSMKSKNVK 558
           ++   M+  NVK
Sbjct: 358 TLFRDMQMSNVK 369


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/684 (33%), Positives = 373/684 (54%), Gaps = 75/684 (10%)

Query: 87  LRDIISWNALLSAHARSG--SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           L D  + + L +A A S   ++   R +FD++P  +  S+N  I   A      +++ VF
Sbjct: 168 LHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVF 227

Query: 145 SRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
            RM  D  F P  +T    + A A+      GK +HG  +  + G +VFV N+L   YA 
Sbjct: 228 IRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYAS 287

Query: 204 GGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            G +D A  +F+ +  NN+++VSWN M++G+++ G P K +DLF+ M+  G++P+ VT+ 
Sbjct: 288 CGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMV 347

Query: 262 NILGACFQT-----------------------------------GRIDDAGRLFHVIKEK 286
           +++ AC +T                                   G ++ A  LF  ++++
Sbjct: 348 SVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKR 407

Query: 287 DNVCWTT-------------------------------MIVGYTQNGKEEDALILFNEM- 314
           D V WTT                               +I GY Q+G+ ++AL +F E+ 
Sbjct: 408 DVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQ 467

Query: 315 -LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
                 RPD+ ++ S +S+CA+L ++  G+ +HG      +  +  ++++LIDMY K G 
Sbjct: 468 LTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGD 527

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A  VF+ +  ++V  W++MI G A +G+   A+ L+  + +  +KP+S TF ++L A
Sbjct: 528 VEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCA 587

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C H+ L + G+  FD +  V+G+ P   HY+CM+++LGR+  +++A+  I+ +P  P++ 
Sbjct: 588 CSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSAS 647

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +W  LL  C + G+++  E A   L E+EP N G Y++LSN+YA  G WE V+ +R  M+
Sbjct: 648 VWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMR 707

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
              +KK    S IEID  VH+F+  D  HP +  IY +L +++ +L+  G+  NT  +L 
Sbjct: 708 DSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQ 767

Query: 614 DTQEEE-KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
             +EEE K K++  HSEK+A+A+ LI +      IRI+KN+RVC DCH   K  S + GR
Sbjct: 768 FVEEEEMKEKALKLHSEKMAIAFGLI-RADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGR 826

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I+LRD  RFHHF GG+CSC+D W
Sbjct: 827 DIVLRDRYRFHHFSGGHCSCQDYW 850



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 139/250 (55%), Gaps = 3/250 (1%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +  ++ L +++  ++D N    N     N  +  + K G++  AR LFD M  RD++S
Sbjct: 353 CAKTMNLTLGRKVCDYIDRNEMMMNLNVC-NATIDMFVKCGEVEIARGLFDNMEKRDVVS 411

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ--KD 150
           W  ++  +A+       R +FD MP +D  ++N  I+G+   G  +EAL +F  +Q  K 
Sbjct: 412 WTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKS 471

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
              P   T +S L+ACAQL  +  G+ IHG I    +  N  +  +L DMY+K G+++KA
Sbjct: 472 GARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKA 531

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
             +F  + N+++  W+ MI+G   +G+ +  I+LF +MQ   + P+ VT +N+L AC  +
Sbjct: 532 IEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHS 591

Query: 271 GRIDDAGRLF 280
           G +D+  RLF
Sbjct: 592 GLVDEGKRLF 601


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/618 (36%), Positives = 348/618 (56%), Gaps = 54/618 (8%)

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVS----ALNACAQLLDLRRGKQIHGKIVVGNL 187
           A++G    A+ +F RM+         + ++    AL +CA L     G  +H   +    
Sbjct: 30  ASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGA 89

Query: 188 GGNVFVRNALTDMYAK-------GGEIDKA-------RWLFDRMNNRNLVSWNLMISGYL 233
             + F  NAL ++Y K         E+D +       R +FD M  +++VSWN ++ G  
Sbjct: 90  FADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCA 149

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-----GACFQTG----------------- 271
           ++G+  + + L +EM   G  PD  T+S++L     GA  + G                 
Sbjct: 150 ESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVF 209

Query: 272 -------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                        R D + ++F  +  +D + W +M+ G  QNG  ++AL LF  ML   
Sbjct: 210 VGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSG 269

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           ++P   + SS++ +C  LASL  G+ +H   +  G D ++ +SS+LIDMYCKCG    A 
Sbjct: 270 IKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIAR 329

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F+ + + ++VSW +MI G+A +G   EAL L+D++   NLKP+  TF++VL+AC HA 
Sbjct: 330 RIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAG 389

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L ++G  +F+S+S  +GI PSL+H+A + + LGR   +++A + I  +  KP + +WSTL
Sbjct: 390 LVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTL 449

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C +  +    E  A+ +F+LEP + G +I+LSN Y++ GRW + A +R SM+ K ++
Sbjct: 450 LRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQ 509

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K  A SWIE+ NK H FV+ D++HP  E I + L+   +++   G+ PNT  V  D +EE
Sbjct: 510 KEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEE 569

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
           +K   +C HSEKLA+ + +I  P G T IR+MKN+RVC DCH   KF S I+GR I++RD
Sbjct: 570 QKNSVLCGHSEKLAIVFGIISTPPGTT-IRVMKNLRVCVDCHTVTKFISKIVGREIVMRD 628

Query: 679 SNRFHHFVGGNCSCKDNW 696
           +NRFHHF  G CSC D W
Sbjct: 629 ANRFHHFKDGICSCGDFW 646



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 173/364 (47%), Gaps = 39/364 (10%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           ++ +R +FD+MP +D VS+NT + G A  G   EAL +   M +D  +P  +T  S L  
Sbjct: 123 LESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPI 182

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
            A+  D+RRG ++HG         +VFV ++L DMYA     D +  +FD +  R+ + W
Sbjct: 183 FAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILW 242

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------ 267
           N M++G  +NG   + + LF+ M   G+ P  VT S+++ AC                  
Sbjct: 243 NSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIR 302

Query: 268 -----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                             + G +  A R+F  I+  D V WT MI+G+  +G   +AL+L
Sbjct: 303 GGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVL 362

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYC 369
           F+ M   +++P+  +  +V+++C+    +  G +  +  +   G+   L   +AL D   
Sbjct: 363 FDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLG 422

Query: 370 KCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           + G  ++A+   + M  +   S W++++     +   + A  +  K+   +L+P S    
Sbjct: 423 RPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIF--DLEPRSMGSH 480

Query: 429 SVLS 432
            +LS
Sbjct: 481 IILS 484



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 155/322 (48%), Gaps = 21/322 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL--------F 76
           ++  LVL C        A  L   M  +  +P++ F  + +L  +A+   +        F
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDS-FTLSSVLPIFAEGADVRRGMELHGF 198

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
             R+ F      D+   ++L+  +A          +FD +P+RD++ +N+ +AG A  G 
Sbjct: 199 ATRNGFHD----DVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGS 254

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
             EAL +F RM     +P   T  S + AC  L  L  GKQ+H  ++ G   GNVF+ ++
Sbjct: 255 VDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSS 314

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY K G +  AR +FDR+ + ++VSW  MI G+  +G  ++ + LF  M+L  L P+
Sbjct: 315 LIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPN 374

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT-----TMIVGYTQNGKEEDALILF 311
            +T   +L AC   G +D   + F+ + +   +  +      +     + GK E+A   +
Sbjct: 375 HITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEA---Y 431

Query: 312 NEMLSEDVRPDKFSISSVVSSC 333
           N +    ++P     S+++ +C
Sbjct: 432 NFISGMKIKPTASVWSTLLRAC 453



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 121/270 (44%), Gaps = 26/270 (9%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI----SSVVSSCAKLASLYHGQVVH 346
           W   I      G    A+ LF  M + D      S+       + SCA L     G  +H
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCG--------------VTDDAWTVFNMMPTRNVVSW 392
             A+  G   D   ++AL+++YCK                V +    VF+ MP ++VVSW
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N+++ G A++G+  EAL L  ++ ++  KPDSFT  SVL          RG       + 
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGME-LHGFAT 200

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +G    +   + +I++    +  D +V +  +LP + ++++W+++L+ CA  G +    
Sbjct: 201 RNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DAILWNSMLAGCAQNGSVDEAL 259

Query: 513 MAARHLFE--LEPINAGPYIMLSNMYAACG 540
              R +    ++P+     +  S++  ACG
Sbjct: 260 GLFRRMLHSGIKPMP----VTFSSLIPACG 285


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/714 (32%), Positives = 379/714 (53%), Gaps = 75/714 (10%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T+  Y  ++  C     ++    +   +    +E +  F+   L++ Y K G +  A D 
Sbjct: 104 TKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDV-FVGTALINMYNKCGSVRGAWDS 162

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F ++  RD++SW A+++A  +     D  AL                           A 
Sbjct: 163 FKRLEHRDVVSWTAMIAACVQ----HDQFAL---------------------------AR 191

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            ++ RMQ D   P   T  +  NA      L  GK ++G +  G +  +V V N+  +M+
Sbjct: 192 WLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMF 251

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-- 259
              G +  AR LF+ M +R++V+WN++I+ Y++N    + + LF  +Q  G+  +++T  
Sbjct: 252 GNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFV 311

Query: 260 ------------------------------------VSNILGACFQTGRIDDAGRLFHVI 283
                                               + ++ G C   G+   A ++F  +
Sbjct: 312 LMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQ---AWKIFVDM 368

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             KD + WT M V Y QNG  ++AL LF EM  E  RP   ++ +V+ +CA LA+L  G+
Sbjct: 369 GSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGR 428

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H   +      +++V +ALI+MY KCG   +A +VF  M  R+++ WNSM+  YAQ+G
Sbjct: 429 QIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHG 488

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              E L L++++  + +K D+ +FVSVLSA  H+     G  +F ++     ITP+ + Y
Sbjct: 489 YYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELY 548

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
            C+++LLGR+  + +AVD++  L    P+ ++W TLL  C         + AA  + E +
Sbjct: 549 GCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERD 608

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P ++G Y++LSN+YAA G W+ V  +R  M+S+ VKK    S IEI N+VH+F+  DR+H
Sbjct: 609 PSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSH 668

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P    IY EL  L  +++ AG+ P+TK++LHD ++E K   + YHSE+LA+A+ LI  P 
Sbjct: 669 PRRHPIYAELDVLNSEMRAAGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPP 728

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G TP+R++KN+RVC DCH   K+ S + GR I++RD++RFH+F  G CSCKD W
Sbjct: 729 G-TPLRVIKNLRVCSDCHTATKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 135/517 (26%), Positives = 243/517 (47%), Gaps = 71/517 (13%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +  L+  C+   +V+  +R+  H+    +E N   +   L+  YA+ G +  A+ +F+ +
Sbjct: 7   FVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNN-LVCGHLIQMYAQCGSVPEAQQVFEIL 65

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             +D+ +W  ++  + + G        +D+                        AL +F 
Sbjct: 66  ERKDVFAWTRMIGIYCQQGD-------YDR------------------------ALGMFY 94

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +MQ++   PT  T+V+ LNACA    L+ G +IHG+I+     G+VFV  AL +MY K G
Sbjct: 95  QMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCG 154

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A   F R+ +R++VSW  MI+  +++ Q      L++ MQL G+ P+++T+  +  
Sbjct: 155 SVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFN 214

Query: 266 A-----------------------------------CFQTGRIDDAGRLFHVIKEKDNVC 290
           A                                       G + DA RLF  + ++D V 
Sbjct: 215 AYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVT 274

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I  Y QN    +A+ LF  +  + V+ +  +   +++    L SL  G+V+H    
Sbjct: 275 WNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVK 334

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G D D +V++AL+ +Y +C     AW +F  M +++V++W  M   YAQNG   EAL 
Sbjct: 335 EAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQ 394

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINL 469
           L+ ++  E  +P S T V+VL  C H    ++G Q H   I     +   ++    +IN+
Sbjct: 395 LFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINM 452

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            G+   + +A+ + + +  K + L+W+++L   A  G
Sbjct: 453 YGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHG 488



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 139/287 (48%), Gaps = 19/287 (6%)

Query: 13  TLYSRGQAATEEA--YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           TLY + +   E    + +L  D  + ND+         + LN Y   T+    +++H   
Sbjct: 280 TLYVQNENFGEAVRLFGRLQQDGVKANDITFV------LMLNVYTSLTSLAKGKVIHELV 333

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K          +D    RD +   AL+S + R  +      +F  M  +D +++      
Sbjct: 334 KEAG-------YD----RDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 382

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A  GF +EALQ+F  MQ +   PT  T V+ L+ CA L  L++G+QIH  I+       
Sbjct: 383 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRME 442

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + V  AL +MY K G++ +A  +F++M  R+++ WN M+  Y ++G   + + LF +MQL
Sbjct: 443 MVVETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQL 502

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
            G+  D V+  ++L A   +G + D  + F  + +  ++  T  + G
Sbjct: 503 DGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYG 549



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 105/478 (21%), Positives = 194/478 (40%), Gaps = 77/478 (16%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P     V+ L  C+   ++  G+++H  +       N  V   L  MYA+ G + +A+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ +  +++ +W  MI  Y + G   + + +F +MQ   + P +VT   IL AC  T  
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 273 IDDAGRL-----------------------------------FHVIKEKDNVCWTTMIVG 297
           + D   +                                   F  ++ +D V WT MI  
Sbjct: 121 LKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA 180

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             Q+ +   A  L+  M  + V P+K ++ +V ++      L  G+ V+G      ++ D
Sbjct: 181 CVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESD 240

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V ++ ++M+   G+  DA  +F  M  R+VV+WN +I  Y QN    EA+ L+ +L Q
Sbjct: 241 VRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQ 300

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----- 472
           + +K +  TFV +L+         +G+   + +    G          +++L GR     
Sbjct: 301 DGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEA-GYDRDAVVATALMSLYGRCEAPG 359

Query: 473 ----------SSDV----------------DKAVDLIKSLP---HKPNSLIWSTLLSVCA 503
                     S DV                 +A+ L + +     +P S     +L  CA
Sbjct: 360 QAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCA 419

Query: 504 MKGDIKHGEMAARHL----FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
               ++ G     H+    F +E +     I   NMY  CG+  +  S+   M  +++
Sbjct: 420 HLAALQKGRQIHSHIIENRFRMEMVVETALI---NMYGKCGKMAEAMSVFEKMAKRDI 474


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/600 (36%), Positives = 341/600 (56%), Gaps = 42/600 (7%)

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
           A+A  G ++   ALF +    D   +  AI   +  G   +A  ++ ++      P ++T
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
             S L +C+     + GK IH  ++   LG + +V   L D+YAKGG++  A+ +FDRM 
Sbjct: 133 FSSLLKSCST----KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            R+LVS   MI+ Y K G                                    ++ A  
Sbjct: 189 ERSLVSSTAMITCYAKQGN-----------------------------------VEAARA 213

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLA 337
           LF  + E+D V W  MI GY Q+G   DAL+LF ++L+E   +PD+ ++ + +S+C+++ 
Sbjct: 214 LFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIG 273

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ +H       +  ++ V + LIDMY KCG  ++A  VFN  P +++V+WN+MI 
Sbjct: 274 ALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIA 333

Query: 398 GYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           GYA +G   +AL L++++     L+P   TF+  L AC HA L   G   F+S+   +GI
Sbjct: 334 GYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGI 393

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P ++HY C+++LLGR+  + +A + IK++    +S++WS++L  C + GD   G+  A 
Sbjct: 394 KPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAE 453

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           +L  L   N+G Y++LSN+YA+ G +E VA +R+ MK K + K    S IEI+NKVH+F 
Sbjct: 454 YLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFR 513

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + DR H +++ IY  L K+ ++++  G+ PNT  VL D +E EK +S+  HSE+LA+AY 
Sbjct: 514 AGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYG 573

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           LI    G +P++I KN+RVC DCH   K  S I GR I++RD NRFHHF  G+CSC D W
Sbjct: 574 LISTKPG-SPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 198/382 (51%), Gaps = 30/382 (7%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E  ++ L+  C+     +  K + +H+ L F      ++   L+  YAK G +  A+ +F
Sbjct: 130 EFTFSSLLKSCS----TKSGKLIHTHV-LKFGLGIDPYVATGLVDVYAKGGDVVSAQKVF 184

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D+MP R ++S  A+++ +A+ G+V+  RALFD M  RD VS+N  I G+A  GF  +AL 
Sbjct: 185 DRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALM 244

Query: 143 VFSR-MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           +F + + + + +P + T V+AL+AC+Q+  L  G+ IH  +    +  NV V   L DMY
Sbjct: 245 LFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMY 304

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTV 260
           +K G +++A  +F+    +++V+WN MI+GY  +G  +  + LF EMQ + GL P ++T 
Sbjct: 305 SKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITF 364

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFN 312
              L AC   G +++  R+F  + ++  +        C  +++      G+       + 
Sbjct: 365 IGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLL------GRAGQLKRAYE 418

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV---VLGVD-DDLLVSSALIDMY 368
            + + ++  D    SSV+ SC       HG  V GK +   ++G++  +  +   L ++Y
Sbjct: 419 TIKNMNMDADSVLWSSVLGSCK-----LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIY 473

Query: 369 CKCGVTDDAWTVFNMMPTRNVV 390
              G  +    V N+M  + +V
Sbjct: 474 ASVGDYEGVAKVRNLMKEKGIV 495



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 105/437 (24%), Positives = 171/437 (39%), Gaps = 107/437 (24%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P    L+ +L   YA  GK+ ++  LF +    D+  + A +                  
Sbjct: 61  PRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAI------------------ 102

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                    NTA    +  G   +A  ++ ++      P ++T  S L +C+     + G
Sbjct: 103 ---------NTA----SINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCST----KSG 145

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGE----------------------------- 206
           K IH  ++   LG + +V   L D+YAKGG+                             
Sbjct: 146 KLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQ 205

Query: 207 --IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNI 263
             ++ AR LFD M  R++VSWN+MI GY ++G P   + LFQ++   G   PDE+TV   
Sbjct: 206 GNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAA 265

Query: 264 LGACFQTGRIDDAGRLFHVI------------------------------------KEKD 287
           L AC Q G + + GR  HV                                       KD
Sbjct: 266 LSACSQIGAL-ETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKD 324

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHG-QVV 345
            V W  MI GY  +G  +DAL LFNEM     ++P   +    + +CA    +  G ++ 
Sbjct: 325 IVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIF 384

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW-TVFNMMPTRNVVSWNSMINGYAQNGQ 404
                  G+   +     L+ +  + G    A+ T+ NM    + V W+S++     +G 
Sbjct: 385 ESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGD 444

Query: 405 DLEALALYDKLLQENLK 421
            +    + + L+  N+K
Sbjct: 445 FVLGKEIAEYLIGLNIK 461


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/618 (37%), Positives = 340/618 (55%), Gaps = 39/618 (6%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-G 175
           P    VSY   I+G A      +AL  F+ M +    P D+T  SA  A A        G
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 176 KQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            Q+H   +  G L  + FV  A  DMY K G +  AR LFD M NRN+V+WN +++  + 
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVL 199

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------F 268
           +G+P + ++ +  ++  G  P+ V+V     AC                           
Sbjct: 200 DGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSV 259

Query: 269 QTGRIDDAGR---------LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
               +D  G+         +F  +  ++NV W +M+V Y QNG EE+A  ++        
Sbjct: 260 SNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGE 319

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            P  F +SSV+++CA L  L  G+ +H  AV   +D ++ V+SAL+DMY KCG  +DA  
Sbjct: 320 EPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQ 379

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHAD 438
           VF  MP RN+V+WN+MI GYA  G    AL+++DK++  +   P+  T V+VL+AC    
Sbjct: 380 VFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGG 439

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L + G   F ++    GI P ++HYAC+++LL R+   ++A  +I+ +P +P+  +W  L
Sbjct: 440 LTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGAL 499

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C M G  + G +AA  LFEL+P ++G +++LSNM A+ GRW +   +R  MK+  +K
Sbjct: 500 LGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIK 559

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K    SWI   N VH F ++D TH     I   L+KL  ++Q AG+ P+T+  L+D +EE
Sbjct: 560 KDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEE 619

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
           EK   +  HSEKLALA+ LI  P G+ PIRIMKN+R+C DCH   KF S I GR II+RD
Sbjct: 620 EKESEVFQHSEKLALAFGLICIPPGI-PIRIMKNLRICVDCHRAFKFISGIAGREIIVRD 678

Query: 679 SNRFHHFVGGNCSCKDNW 696
           +N FHHF    CSCKD W
Sbjct: 679 NNMFHHFKNYECSCKDYW 696



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 180/402 (44%), Gaps = 69/402 (17%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           Y P+  F+    L  Y K+G L  AR LFD+MP R++++WNA+++            A+ 
Sbjct: 151 YLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMT-----------NAVL 199

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D  P+                    E ++ +  ++     P   +  +  NACA + +L 
Sbjct: 200 DGRPL--------------------ETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLS 239

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q +G +     G +V V N++ D Y K   + KAR +FD M  RN VSW  M+  Y 
Sbjct: 240 LGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYA 299

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------- 268
           +NG  ++   ++   +  G  P +  VS++L  C                          
Sbjct: 300 QNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIF 359

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSE 317
                     + G I+DA ++F  + +++ V W  MI GY   G   +AL +F++M + +
Sbjct: 360 VASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQ 419

Query: 318 DVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           +  P+  ++ +V+++C++      G ++        G++  +   + ++D+ C+ G+ + 
Sbjct: 420 ETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEER 479

Query: 377 AWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQ 417
           A+ +   MP R  +S W +++ G   +G+        +KL +
Sbjct: 480 AYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFE 521



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 10/282 (3%)

Query: 8   RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           R+  D + +R   A     T  VLD   +  VE    L+    +        F +     
Sbjct: 176 RRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGM 235

Query: 68  FYAKSGKLFY---ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
                G+ FY   A+  F K    D+   N+++  + +   V   RA+FD M +R++VS+
Sbjct: 236 TNLSLGEQFYGFVAKCGFGK----DVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSW 291

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
            + +  +A  G   EA  V+   ++   EPTD+   S L  CA LL L  G+ +H   V 
Sbjct: 292 CSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVR 351

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             +  N+FV +AL DMY K G I+ A  +F  M  RNLV+WN MI GY   G     + +
Sbjct: 352 SCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSV 411

Query: 245 FQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           F +M ++G    P+ +T+ N+L AC + G   +   LF  +K
Sbjct: 412 FDKM-IMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMK 452



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 3/183 (1%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++  V +     S   G+  H +A+ +L       + + L+++Y K  +   A       
Sbjct: 20  LAGAVEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAAD 79

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           P+  VVS+ + I+G AQ+ + L+AL+ +  +L+  L+P+ FTF S   A   A       
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 445 NHFDSISAVHGITPSLDHYAC-MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
               +++   G  P     +C  +++  ++  +  A  L   +P++ N + W+ +++   
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNR-NVVAWNAVMTNAV 198

Query: 504 MKG 506
           + G
Sbjct: 199 LDG 201


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 345/613 (56%), Gaps = 52/613 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR-F 152
           N L++ + + G+      +FD+MP RD +++ + +        S + L VFS +      
Sbjct: 42  NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 101

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P D+   + + ACA L  +  G+Q+H   +V     +  V+++L DMYAK G ++ A+ 
Sbjct: 102 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 161

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  +N +SW  M+SGY K                                   +GR
Sbjct: 162 VFDSIRVKNTISWTAMVSGYAK-----------------------------------SGR 186

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVS 331
            ++A  LF ++  K+   WT +I G+ Q+GK  +A  +F EM  E V   D   +SS+V 
Sbjct: 187 KEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVG 246

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA LA+   G+ VHG  + LG D  + +S+ALIDMY KC     A  +F+ M  R+VVS
Sbjct: 247 ACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVS 306

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+GQ  +ALALYD ++   +KP+  TFV ++ AC H    E+G+  F S++
Sbjct: 307 WTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMT 366

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GI PSL HY C+++LLGRS  +D+A +LI ++P  P+   W+ LLS C  +G  + G
Sbjct: 367 KDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMG 426

Query: 512 EMAARHL---FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
              A HL   F+L+  +   YI+LSN+YA+   W  V+  R  +    V+K   +S +E+
Sbjct: 427 IRIADHLVSSFKLK--DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEV 484

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA-----GFSPNTKLVLHDTQEEEKVKS 623
             +   F + + +HP  E I+    +L+KKL+E      G+ P+T  +LHD  E+EK K 
Sbjct: 485 RKETEVFYAGETSHPLKEDIF----RLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 540

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           + +HSE+ A+AY L+K   G TPIRI+KN+RVCGDCH+ +K  S+I  R II+RD+ R+H
Sbjct: 541 LFWHSERSAVAYGLLKAVPG-TPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYH 599

Query: 684 HFVGGNCSCKDNW 696
           HF GG CSC D W
Sbjct: 600 HFKGGKCSCNDFW 612



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ LV  C  +  ++  +++  H  ++ Y  N   + + L+  YAK G L  A+ +FD +
Sbjct: 108 FSALVKACANLGSIDHGRQVHCHFIVSEY-ANDEVVKSSLVDMYAKCGLLNSAKAVFDSI 166

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
            +++ ISW A++S +A+SG  ++   LF  +P+++  S+   I+GF   G   EA  VF+
Sbjct: 167 RVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 226

Query: 146 RMQKDRFEPTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M+++R +  D   +S++  ACA L     G+Q+HG ++       VF+ NAL DMYAK 
Sbjct: 227 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++  A+ +F RM +R++VSW  +I G  ++GQ +K + L+ +M   G+ P+EVT   ++
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G ++    LF  + +   +      +T ++    ++G  ++A  L + M     
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PF 403

Query: 320 RPDKFSISSVVSSCAK 335
            PD+ + ++++S+C +
Sbjct: 404 PPDEPTWAALLSACKR 419



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 105/228 (46%), Gaps = 10/228 (4%)

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA+  +L   + +H   V LG+     +++ L+++Y KCG    A  VF+ MP R+ ++W
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 393 NSMINGYAQNGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSI 450
            S++    Q     + L           L+PD F F +++ AC +    + G Q H   I
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFI 132

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
            + +     +   + ++++  +   ++ A  +  S+  K N++ W+ ++S  A  G    
Sbjct: 133 VSEYANDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKSGR--- 186

Query: 511 GEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            +  A  LF + P+ N   +  L + +   G+  +  S+ + M+ + V
Sbjct: 187 -KEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERV 233


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/660 (35%), Positives = 364/660 (55%), Gaps = 43/660 (6%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +AR +  +    D++ +N L++ + + G +   R +FD MP R+ VS N  ++G+A
Sbjct: 35  GKAVHARVV--RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYA 92

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           + G  R+AL +   ++   F   +Y   SA+ A A +     G+Q HG  +   L  + +
Sbjct: 93  SSGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPY 149

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V +A+  MY +   +D+A  +FD +++ N+ ++N MI+G+L  GQ      + + M    
Sbjct: 150 VCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNV 209

Query: 253 LNPDEVTVSNILGACFQT--------------------------------GRID---DAG 277
              D V+   +LG C  T                                G+ D   +A 
Sbjct: 210 GQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEAN 269

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           R+F V+ EK+ V WT ++  YTQN   EDAL LF +M  E VRP++F+ +  ++SCA LA
Sbjct: 270 RVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLA 329

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L +G  +    +  G    L V +AL++MY K G  +DA  VF  MP R+VVSWNS+I 
Sbjct: 330 TLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIII 389

Query: 398 GYAQNGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           GYA +G+  EA+ A +D L  E + P   TF+ VLSAC    L + G  + + +    G+
Sbjct: 390 GYAHHGRAREAMEAFHDMLFAEEV-PSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGV 448

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P  +HY CM+ LL R   +D+A   I+S     + + W +LLS C +  +   G   A 
Sbjct: 449 KPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAE 508

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            +F+L+P + G Y++LSNMYA   RW+ V  +R  M+   V+K    SWI++ ++VH F 
Sbjct: 509 QIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFT 568

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           SED+ HP  E I ++L +LI K++  G+ PN  + LHD ++E+K + + YHSEKLALA+ 
Sbjct: 569 SEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFG 628

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           LI+ P G   IRIMKN+R+C DCH+ +K  S   GR I++RD+ RFH    G CSC D W
Sbjct: 629 LIRTPKG-EAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/589 (38%), Positives = 345/589 (58%), Gaps = 22/589 (3%)

Query: 114 DKMPIRDSVSY---NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           D +P + S S    + AI+G A  G   EA     ++ K  FE         L+  A++ 
Sbjct: 5   DVLPSKTSFSLILRSCAISGEAQLG---EAFHC--QIMKMGFEYDMILQTGLLDFYAKVG 59

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           DL+  K    ++ +G    +V   NA+    +K G +++AR LFD M  RN  SWN MI+
Sbjct: 60  DLKCAK----RVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMIT 115

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNP--DEVTVSNILGACFQTGRIDDAGRLFHVI-KEKD 287
            Y K G      D+     +   NP  D V+ + I+    ++ ++  A  LF ++   ++
Sbjct: 116 CYCKLG------DINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARN 169

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           +V W TMI  Y Q G+   A+ +F +M SE+V+P + ++ S++S+CA L +L  G+ +HG
Sbjct: 170 SVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHG 229

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
                 +  D+++ +ALIDMYCKCG  + A  VF+ +  +N+  WNS+I G   NG+  E
Sbjct: 230 YIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEE 289

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+A +  + +E +KPD  TFV +LS C H+ L   GQ +F  +  V+G+ P ++HY CM+
Sbjct: 290 AIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMV 349

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  + +A++LI+++P KPNS++  +LL  C +  D K GE   + L EL+P + G
Sbjct: 350 DLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGG 409

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y+ LSN+YA+  RW+DV + R  M  + V K    S IE++N VH+FV+ D +HP+   
Sbjct: 410 NYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQ 469

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I   L ++ K+L+  G  PNT  VLHD +EEEK  +I YHSE++A+A+ L+  P G T I
Sbjct: 470 INAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKT-I 528

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R++KN+R C DCH  MK  S+   R II+RD  RFHHF  G+CSC D W
Sbjct: 529 RVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/414 (24%), Positives = 177/414 (42%), Gaps = 81/414 (19%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           ++ +++ ++  C    + +L +     +    +E +   L   LL FYAK G L  A+ +
Sbjct: 9   SKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDM-ILQTGLLDFYAKVGDLKCAKRV 67

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F  MP RD+++ NA++SA ++ G V++ R LFD M  R+S S+N+ I             
Sbjct: 68  FMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMI------------- 114

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
                        T Y  +  +N+   + D    K             +V   NA+ D Y
Sbjct: 115 -------------TCYCKLGDINSARLMFDCNPVK-------------DVVSWNAIIDGY 148

Query: 202 AKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
            K  ++  A+ LF  M + RN V+WN MIS Y++ G+    I +FQ+MQ   + P EVT+
Sbjct: 149 CKSKQLVAAQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTM 208

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDALILFNE--- 313
            ++L AC   G +D    +   I+ K    D V    +I  Y + G  E A+ +F+    
Sbjct: 209 VSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSR 268

Query: 314 ----------------------------MLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                                       M  E ++PD  +   ++S C+    L  GQ  
Sbjct: 269 KNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRY 328

Query: 346 HGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
             + + V G++  +     ++D+  + G   +A  +   MP +     NSM+ G
Sbjct: 329 FSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMVLG 378



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 107/248 (43%), Gaps = 49/248 (19%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML  DV P K S S ++ SCA       G+  H + + +G + D+++ + L+D Y K G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
              A  VF  MP R+VV+ N+MI+  +++G   EA  L+D + + N    S ++ S+++ 
Sbjct: 61  LKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERN----SCSWNSMITC 116

Query: 434 -CLHADLFERGQNHFDSISAVHGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPHKP 490
            C   D+        +S   +    P  D   +  +I+   +S  +  A +L   +    
Sbjct: 117 YCKLGDI--------NSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSAR 168

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           NS+ W+T++S                                   Y  CG +    S+  
Sbjct: 169 NSVTWNTMISA----------------------------------YVQCGEFGTAISMFQ 194

Query: 551 SMKSKNVK 558
            M+S+NVK
Sbjct: 195 QMQSENVK 202


>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
          Length = 587

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/611 (37%), Positives = 338/611 (55%), Gaps = 53/611 (8%)

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166
           +  R +    P R+ VS+ + I+G A  G    AL  F  M+++              A 
Sbjct: 9   ESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRRE--------------AV 54

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
           A L     GKQIH   V      +VFV  +  DMY K    D AR LFD +  RNL +WN
Sbjct: 55  ASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWN 114

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQT 270
             IS  + +G+P++ I+ F E + +  +P+ +T    L AC                 ++
Sbjct: 115 AFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRS 174

Query: 271 G-----RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
           G      I  +  +F  +  K+ V W +++  Y QN ++E A +L+     + V    F 
Sbjct: 175 GFDTDVSIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFM 234

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ISSV+S+CA +A L  G+ +H  AV   V+  + V SAL+DMY KCG  +D+   F+ MP
Sbjct: 235 ISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMP 294

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            +N+V+ NS+I GYA  GQ   ALAL+     E + P     V            E G  
Sbjct: 295 EKNLVTRNSLIGGYAHQGQVDMALALF-----EEMAPRGCGAV------------ENGMK 337

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            FDS+ + +GI P  +HY+C++++LGR+  V++A + IK +P +P   +W  L + C M 
Sbjct: 338 IFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 397

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
           G  + G +AA +LF+L+P ++G +++LSN +AA GRW +  ++R  +K   +KK A YSW
Sbjct: 398 GKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSW 457

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           I + N+VH F ++DR+H   + I   L+KL  +++ AG+ P+ KL L+D +EEEK   + 
Sbjct: 458 ITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVS 517

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           +HSEKLALA+ L+  P  V PIRI KN+R+CGDCH F KF S  + R II+RD+NRFH F
Sbjct: 518 HHSEKLALAFGLLSLPLSV-PIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 576

Query: 686 VGGNCSCKDNW 696
             G CSCKD W
Sbjct: 577 KDGICSCKDYW 587



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 55/377 (14%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-- 257
           MY+K    + AR +      RN+VSW  +ISG  +NG     +  F EM+   +      
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREAVASLRLP 60

Query: 258 VTVSNILGACFQTGRI-------------------DDAGRLFHVIKEKDNVCWTTMIVGY 298
           VT   I     + GRI                   DDA +LF  I E++   W   I   
Sbjct: 61  VTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNS 120

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +A+  F E    D  P+  +  + +++C+    L  G  +HG  +  G D D+
Sbjct: 121 VTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDV 180

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + S+ I              +F  M T+N VSW S++  Y QN +D +A  LY +  ++
Sbjct: 181 SIRSSEI--------------IFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKD 226

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            ++   F   SVLSAC      E G++ H  ++ A   +  ++   + ++++ G+   ++
Sbjct: 227 IVETSDFMISSVLSACAGMAGLELGRSIHAHAVKAC--VERTIFVGSALVDMYGKCGCIE 284

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            +      +P K N +  ++L+   A +G +   +MA     E+ P              
Sbjct: 285 DSEQAFDEMPEK-NLVTRNSLIGGYAHQGQV---DMALALFEEMAP-------------R 327

Query: 538 ACGRWEDVASIRSSMKS 554
            CG  E+   I  SM+S
Sbjct: 328 GCGAVENGMKIFDSMRS 344



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%)

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           S++    +F +M  +++VS+ + +A +       +A  ++ R +KD  E +D+   S L+
Sbjct: 181 SIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVLS 240

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           ACA +  L  G+ IH   V   +   +FV +AL DMY K G I+ +   FD M  +NLV+
Sbjct: 241 ACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT 300

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            N +I GY   GQ    + LF+EM   G    E
Sbjct: 301 RNSLIGGYAHQGQVDMALALFEEMAPRGCGAVE 333



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  +EL + + +H      E  T F+ + L+  Y K G +  +   FD+MP +++++
Sbjct: 242 CAGMAGLELGRSIHAHAVKACVE-RTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVT 300

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIR 119
            N+L+  +A  G V    ALF++M  R
Sbjct: 301 RNSLIGGYAHQGQVDMALALFEEMAPR 327



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R I   +AL+  + + G ++D    FD+MP ++ V+ N+ I G+A++G    AL +F  M
Sbjct: 265 RTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEM 324

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                   +   +   ++      +  G + +  IV               DM  + G +
Sbjct: 325 APRGCGAVE-NGMKIFDSMRSTYGIEPGAEHYSCIV---------------DMLGRAGMV 368

Query: 208 DKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----DEVTVSN 262
           ++A     +M  +  +S W  + +    +G+P+  + L     L  L+P    + V +SN
Sbjct: 369 ERAYEFIKKMPIQPTISVWGALQNACRMHGKPQ--LGLLAAENLFKLDPKDSGNHVLLSN 426

Query: 263 ILGA 266
              A
Sbjct: 427 TFAA 430


>gi|302774719|ref|XP_002970776.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
 gi|300161487|gb|EFJ28102.1| hypothetical protein SELMODRAFT_94128 [Selaginella moellendorffii]
          Length = 750

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 241/748 (32%), Positives = 382/748 (51%), Gaps = 84/748 (11%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E    +V  C    D+   KR+ +H+ D N    N  FL N L+  Y K G L  AR +F
Sbjct: 12  EHLASIVRACGSSRDLIAGKRIHAHIADANL--GNYRFLANLLVEMYGKCGSLHDARRVF 69

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D +   +I SWN L+ A+ ++G +++ R  F+KMP ++ V +   I   A  G+   A  
Sbjct: 70  DSIHSPNIFSWNLLVVAYTQNGRLREARQCFEKMPGKNVVCWTGLITANAQSGYVLSARG 129

Query: 143 VFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           VF +M Q++R      T  + +       D+   K IH ++V   +   + +   +  MY
Sbjct: 130 VFEKMPQRNRV-----TWTAMVWCLVNAGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMY 184

Query: 202 AKGGEIDKARWLFD-----------------------------------RMNNRNLVSWN 226
              G +D+AR LFD                                   R    +++ WN
Sbjct: 185 LSCGSLDEARNLFDLLPSKDVGMWTAVIAAYAKYGRWQEAIKLFETMESRTGPYSVLVWN 244

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI------------- 273
            +IS   +NGQ K  ++LF +M+  G+ PD +T++  L  C  +G +             
Sbjct: 245 AIISASFQNGQLKGSLELFWKMRRQGVRPDSLTLATALDTCAASGNLHEGRMVAELVTVY 304

Query: 274 ----------------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                                 DDA R+F  +  +  V W+ MI  Y+++G   +A +L 
Sbjct: 305 GLQSNDLVNSSLVHMYGKCGSLDDARRVFDGMAHRGPVVWSKMIAAYSEHGHCSEAFVLL 364

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            EM S  +  D  S  + + +C  L +L  GQ VHG   + G++ D+ V +AL+DMY KC
Sbjct: 365 KEMESAKMVADASSCVAFLQACGSLLALEAGQEVHGWITMKGLEQDVFVGNALVDMYGKC 424

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  ++AW VF+ M  +N  SWN M+  Y  +G   EA+ ++ ++LQE +KP++ TF SVL
Sbjct: 425 GSVEEAWAVFDNMKEKNWFSWNFMVEAYCSSGYSTEAIQVFLQMLQEGVKPNAKTFTSVL 484

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            AC HA     G  H   +S+ + + P  +HYAC + LLGRS  V +A + +K LP    
Sbjct: 485 VACGHAGFIREGILHLVYMSSDYDVVPIAEHYACAVGLLGRSGWVKEAEEYVKKLPDAEA 544

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
           S +W  L++ C + GD+  G  AA  L E  P  A  Y +++ +Y A  R +D A +R +
Sbjct: 545 S-VWDALVTACRIHGDLDRGRSAAESLLECSPHAARSYAVVAGLYDALARSDDAARVRET 603

Query: 552 MKSKNVKKFAAYSWIEIDNKV-HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN-TK 609
           M SK + +    S I + N   H+F++ D  H   + I+ EL  L +++ + G++P+ +K
Sbjct: 604 MTSKGLTEERVTSSILVGNTTCHEFITADTRHKRIQGIHAELEDLGQRIAKDGYAPDASK 663

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
           L++H+  EE++ +S+ YHSE+LA+    I K  G  P+RI++N R+C DCH  +KF S  
Sbjct: 664 LLMHERAEEQRQESLFYHSERLAVGLGAI-KIRGDCPLRIIRNFRMCADCHTAIKFMSKA 722

Query: 670 IGRTIILRD-SNRFHHFVGGNCSCKDNW 696
           +GRTIILRD S++ H FV G+C+C+D W
Sbjct: 723 MGRTIILRDGSSQLHRFVDGHCACRDYW 750



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/525 (21%), Positives = 218/525 (41%), Gaps = 129/525 (24%)

Query: 157 YTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           Y H++++  AC    DL  GK+IH  I   NLG   F+ N L +MY K G +  AR +FD
Sbjct: 11  YEHLASIVRACGSSRDLIAGKRIHAHIADANLGNYRFLANLLVEMYGKCGSLHDARRVFD 70

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            +++ N+ SWNL++  Y +N                                   GR+ +
Sbjct: 71  SIHSPNIFSWNLLVVAYTQN-----------------------------------GRLRE 95

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A + F  +  K+ VCWT +I    Q+G    A  +F +M     + ++ + +++V     
Sbjct: 96  ARQCFEKMPGKNVVCWTGLITANAQSGYVLSARGVFEKM----PQRNRVTWTAMVWCLVN 151

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
              +   +++H + V +G+ + L ++  ++ MY  CG  D+A  +F+++P+++V  W ++
Sbjct: 152 AGDVIEAKIIHEQLVQMGIAEQLPLAKFIVQMYLSCGSLDEARNLFDLLPSKDVGMWTAV 211

Query: 396 INGYA-----------------------------------QNGQDLEALALYDKLLQENL 420
           I  YA                                   QNGQ   +L L+ K+ ++ +
Sbjct: 212 IAAYAKYGRWQEAIKLFETMESRTGPYSVLVWNAIISASFQNGQLKGSLELFWKMRRQGV 271

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +PDS T  + L  C  +     G+   + ++ V+G+  +    + ++++ G+   +D A 
Sbjct: 272 RPDSLTLATALDTCAASGNLHEGRMVAELVT-VYGLQSNDLVNSSLVHMYGKCGSLDDAR 330

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKG----------DIKHGEMAA---------RHLFEL 521
            +   + H+   ++WS +++  +  G          +++  +M A         +    L
Sbjct: 331 RVFDGMAHR-GPVVWSKMIAAYSEHGHCSEAFVLLKEMESAKMVADASSCVAFLQACGSL 389

Query: 522 EPINAGPYI-----------------MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
             + AG  +                  L +MY  CG  E+  ++  +MK KN        
Sbjct: 390 LALEAGQEVHGWITMKGLEQDVFVGNALVDMYGKCGSVEEAWAVFDNMKEKN-------- 441

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
           W   +  V  + S   +        E +   ++ LQE G  PN K
Sbjct: 442 WFSWNFMVEAYCSSGYS-------TEAIQVFLQMLQE-GVKPNAK 478


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/643 (35%), Positives = 348/643 (54%), Gaps = 39/643 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  N L+S +A+ G V   R +FD MP R++VS N  ++G+A+ G  +E+LQ+   + 
Sbjct: 44  DVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLRVVD 103

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F   +Y   +A++A A +     G+Q HG  V        +V NA+  MY +   ++
Sbjct: 104 ---FGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHME 160

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F+ ++  +  ++N MI+GYL  GQ    + + + M       D V+   +LG C 
Sbjct: 161 DASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCA 220

Query: 269 QT--------------------------------GRID---DAGRLFHVIKEKDNVCWTT 293
                                             G+ D   DA R F V+ EK+ V WT 
Sbjct: 221 SMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTA 280

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  YTQN   EDAL LF +M  E V+P++F+ +  ++SCA LA+L  G  +    +  G
Sbjct: 281 VMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTG 340

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
             D LLVS+AL++MY K G  +DA  VF  MP R+VVSWN +I GYA +G   E +  + 
Sbjct: 341 HWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFH 400

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L   + P   TFV VLSAC    L +    + +++    GITP  +HY CM+ LL R 
Sbjct: 401 SMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRV 460

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   I +     + + W +LL+ C +  +   G   A  + +LEP + G Y++LS
Sbjct: 461 GRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQILQLEPSDVGTYVLLS 520

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA   RW+ V  +R  M+ + V+K    SWI + + VH F SE++ HP+ + I ++L 
Sbjct: 521 NMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTSEEKVHPQMDQIAKKLE 580

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +LI +++  G+ PN  +VLHD  +E K + + YHSEKLALA+ LI  P G T I IMKN+
Sbjct: 581 ELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGLIHTPKGAT-IHIMKNL 639

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH+ +K  S +  R I++RD+ RFH   GG CSC D W
Sbjct: 640 RICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 196/445 (44%), Gaps = 112/445 (25%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG----SVQDLRAL---F 113
           LHN L+ FYAK G++  AR +FD MP R+ +S N L+S +A SG    S+Q LR +    
Sbjct: 47  LHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESLQLLRVVDFGM 106

Query: 114 DKMPIRDSVSYNTAI---------------AGFANKGFS--------------REALQVF 144
           ++  +  +VS    +               AGFA + +                +A +VF
Sbjct: 107 NEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLYMYCQCAHMEDASKVF 166

Query: 145 S-------------------RMQKD-----------RFEPTDY-THVSALNACAQLLDLR 173
                               R Q D             E  DY ++V+ L  CA + D  
Sbjct: 167 ESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVSYVAVLGHCASMKDSV 226

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G Q+H + +   L  NV+V +AL DMY K   +  A   F+ +  +N+VSW  +++ Y 
Sbjct: 227 LGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYT 286

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVS---------------NILGACF---------- 268
           +N   +  + LF +M++ G+ P+E T +               N LGAC           
Sbjct: 287 QNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLL 346

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     ++G I+DA R+F  +  +D V W  +I GY  +G   + +  F+ MLS  
Sbjct: 347 VSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAA 406

Query: 319 VRPDKFSISSVVSSCAKLA----SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
           V P   +   V+S+CA+L     + Y+   +  +   +G+       + ++ + C+ G  
Sbjct: 407 VIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKE---VGITPGKEHYTCMVGLLCRVGRL 463

Query: 375 DDA--WTVFNMMPTRNVVSWNSMIN 397
           D+A  + V N + T +VV+W S++N
Sbjct: 464 DEAERFIVNNCIGT-DVVAWRSLLN 487



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 158/331 (47%), Gaps = 17/331 (5%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G   +A+ L  ++ L ++   +AL+  + +   V D    F+ +P ++ VS+   +  + 
Sbjct: 228 GAQVHAQALKKRLEL-NVYVGSALVDMYGKCDHVHDANRAFEVLPEKNVVSWTAVMTAYT 286

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                 +ALQ+F  M+ +  +P ++T+  ALN+CA L  LR G  +   ++      ++ 
Sbjct: 287 QNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLL 346

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V NAL +MY+K G I+ A  +F  M  R++VSWNL+I+GY  +G  ++ ++ F  M    
Sbjct: 347 VSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAA 406

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDA 307
           + P  VT   +L AC Q G +D+A    + + ++  +      +T M+    + G+ ++A
Sbjct: 407 VIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGITPGKEHYTCMVGLLCRVGRLDEA 466

Query: 308 -LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
              + N  +  DV     +  S+++SC    +   G  V  + + L    D+     L +
Sbjct: 467 ERFIVNNCIGTDV----VAWRSLLNSCQVYKNYGLGHRVAEQILQLE-PSDVGTYVLLSN 521

Query: 367 MYCKCGVTDDAWTVFNMMPTRNV-----VSW 392
           MY K    D    V   M  R V     VSW
Sbjct: 522 MYAKANRWDGVVKVRKHMRERAVRKSPGVSW 552


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/648 (34%), Positives = 361/648 (55%), Gaps = 41/648 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  + R         +F KMP+RD V++N  +AG+AN G    A+     MQ
Sbjct: 133 DLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 192

Query: 149 -KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKG 204
            +    P   T VS L   AQ   L +G  +H   +   L  N   V +  AL DMYAK 
Sbjct: 193 DRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKC 252

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM---------------- 248
             +  A  +F  M  RN V+W+ +I G++   +  +  +LF++M                
Sbjct: 253 KHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASA 312

Query: 249 -----------------QLL---GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
                             LL   G++ D    +++L    + G I++A  LF  I  KD 
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + +  ++ GY QNGK E+A ++F +M + +V+PD  ++ S++ +C+ LA+L HG+  HG 
Sbjct: 373 ISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGS 432

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            ++ G+  +  + ++LIDMY KCG  D +  VF+ MP R++VSWN+MI GY  +G   EA
Sbjct: 433 VIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
             L+  +  +  +PD  TF+ +++AC H+ L   G++ FD+++  +GI P ++HY CM++
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 552

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LL R   +D+A   I+S+P K +  +W  LL  C +  +I  G+  +R + +L P   G 
Sbjct: 553 LLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGN 612

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           +++LSN+++A GR+++ A +R   K K  KK    SWIEI+  +H FV  D++HP +  I
Sbjct: 613 FVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFVGGDQSHPCSPDI 672

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y EL  ++  +++ G+  +T  VL D +EEEK K++ YHSEKLA+A+ ++      T I 
Sbjct: 673 YHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT-IF 731

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVCGDCH  +K+ + +  RTII+RD+NRFHHF  G CSC D W
Sbjct: 732 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 217/460 (47%), Gaps = 42/460 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           ++D   W   L  H   G +   R +FD++P  D+ +YN  I  ++ +G    A+ ++  
Sbjct: 30  VKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRS 89

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M   R  P  YT    L AC+ L DL  G+ IH       L  ++FV  AL D+Y +   
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNIL- 264
              A  +F +M  R++V+WN M++GY  +G     I    +MQ   GL P+  T+ ++L 
Sbjct: 150 FGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLP 209

Query: 265 -----GACFQ-----------------------TGRID---------DAGRLFHVIKEKD 287
                GA FQ                       T  +D          A R+FH +  ++
Sbjct: 210 LLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRN 269

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVH 346
            V W+ +I G+    +  +A  LF +ML E +      S++S +  CA LA L  G  +H
Sbjct: 270 EVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLH 329

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                 G+  DL   ++L+ MY K G+ ++A  +F+ +  ++ +S+ ++++GY QNG+  
Sbjct: 330 ALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAE 389

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA  ++ K+   N++PD  T VS++ AC H    + G+    S+  + G+         +
Sbjct: 390 EAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV-IIRGLALETSICNSL 448

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I++  +   +D +  +   +P + + + W+T+++   + G
Sbjct: 449 IDMYAKCGRIDLSRQVFDKMPAR-DIVSWNTMIAGYGIHG 487



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 177/395 (44%), Gaps = 58/395 (14%)

Query: 55  EPNTTFLHNRLLHFYAKSGKLFYA--------RDLFDKMPLRDIISWNALLSAHARSGSV 106
            PN + L + LL   A+ G LF          R   D+   + +I   ALL  +A+   +
Sbjct: 198 RPNASTLVS-LLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIG-TALLDMYAKCKHL 255

Query: 107 QDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV-SALNA 165
                +F  M +R+ V+++  I GF       EA  +F  M  +       T V SAL  
Sbjct: 256 VYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRV 315

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           CA L DLR G Q+H  +    +  ++   N+L  MYAK G I++A  LFD +  ++ +S+
Sbjct: 316 CASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISY 375

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------ 267
             ++SGY++NG+ ++   +F++MQ   + PD  T+ +++ AC                  
Sbjct: 376 GALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVII 435

Query: 268 -----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                             + GRID + ++F  +  +D V W TMI GY  +G  ++A  L
Sbjct: 436 RGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTL 495

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV------LGVDDDLLVSSAL 364
           F  M ++   PD  +   ++++C+     + G V  GK          G+   +     +
Sbjct: 496 FLSMKNQGFEPDDVTFICLIAACS-----HSGLVTEGKHWFDTMTHKYGILPRMEHYICM 550

Query: 365 IDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           +D+  + G  D+A+     MP + +V  W +++  
Sbjct: 551 VDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGA 585


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 355/663 (53%), Gaps = 80/663 (12%)

Query: 113 FDKMPIRDSV----------SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           FD +P   SV           +NT + G A+       L+++ RM      P  YT    
Sbjct: 30  FDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFL 89

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID-------------- 208
           L +CA+      G+QIH +++      + +   +L  MYA+ G ++              
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 209 -----------------KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
                             AR +FD +  R++VSWN MI+GY++N   ++ ++LF+EM   
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 252 GLNPDEVTVSNILGACFQTGRI----------DD-------------------------- 275
            + PDE T+ ++L AC Q+G I          DD                          
Sbjct: 210 NVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEI 269

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  KD V W T+I GYT     ++AL+LF EML     P+  ++ SV+ +CA 
Sbjct: 270 ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAH 329

Query: 336 LASLYHGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           L ++  G+ +H      + GV +   + ++LIDMY KCG  + A  VFN M  +++ SWN
Sbjct: 330 LGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWN 389

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G+A +G+   A  L+ ++ +  ++PD  T V +LSAC H+ L + G++ F S++  
Sbjct: 390 AMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQD 449

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + ITP L+HY CMI+LLG +    +A ++I  +P +P+ +IW +LL  C M G+++  E 
Sbjct: 450 YNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAES 509

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            A+ L E+EP N+G Y++LSN+YA  GRWEDVA IR  +  K +KK    S IEID+ VH
Sbjct: 510 FAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVH 569

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F+  D+ HP++  IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+
Sbjct: 570 EFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAI 629

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI    G T + ++KN+RVC +CH   K  S I  R I+ RD  RFHHF  G CSC 
Sbjct: 630 AFGLISTKPG-TKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCC 688

Query: 694 DNW 696
           D W
Sbjct: 689 DYW 691



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 144/311 (46%), Gaps = 47/311 (15%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +   +EL + + + +D +    ++  + N  +  Y+K G +  A  LF+ +  +D++S
Sbjct: 225 CAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVS 284

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN L                               I G+ +    +EAL +F  M +   
Sbjct: 285 WNTL-------------------------------IGGYTHMNLYKEALLLFQEMLRSGE 313

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIH---GKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
            P D T +S L ACA L  +  G+ IH    K + G   G+  +R +L DMYAK G+I+ 
Sbjct: 314 SPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSA-LRTSLIDMYAKCGDIEA 372

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           A  +F+ M +++L SWN MI G+  +G+     DLF  M+  G+ PD++T+  +L AC  
Sbjct: 373 AHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSH 432

Query: 270 TGRIDDAGRLFHVIKEKDNVC-----WTTMI--VGYTQNGKEEDALILFNEMLSEDVRPD 322
           +G +D    +F  + +  N+      +  MI  +G+    KE + +I    M      PD
Sbjct: 433 SGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPM-----EPD 487

Query: 323 KFSISSVVSSC 333
                S++ +C
Sbjct: 488 GVIWCSLLKAC 498



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 159/389 (40%), Gaps = 75/389 (19%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S +L  C  +   D    A  +F   +E + + W TM+ G   +  
Sbjct: 4   QMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSD 63

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
               L ++  M+S    P+ ++   ++ SCAK  +   G+ +H + + LG + D    ++
Sbjct: 64  LVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTS 123

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG--------------QDL--- 406
           LI MY + G  +DA  VF+    R+VVS  ++I GYA  G              +D+   
Sbjct: 124 LISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSW 183

Query: 407 --------------EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
                         EAL L+ ++++ N++PD  T VSVLSAC  +   E G+     +  
Sbjct: 184 NAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDD 243

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK----------------------- 489
            HG   SL      I L  +  DV+ A  L + L  K                       
Sbjct: 244 HHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALL 303

Query: 490 -----------PNSLIWSTLLSVCAMKGDIKHGEMAARHLF---ELEPINAGPYIMLS-- 533
                      PN +   ++L  CA  G I  G     H++    L+ +  G  +  S  
Sbjct: 304 LFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWI--HVYIDKRLKGVTNGSALRTSLI 361

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           +MYA CG  E    + +SM  K++  + A
Sbjct: 362 DMYAKCGDIEAAHQVFNSMMHKSLSSWNA 390


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 346/611 (56%), Gaps = 40/611 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  +   G +     LF  +  +D VS+N+ I+ FA      +AL++F +M+
Sbjct: 160 DLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKME 219

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++   P   T V  L+ACA+ LDL  G+ +   I    +  ++ + NA+ DMY K G +D
Sbjct: 220 RENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVD 279

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ LFD M  R++ SW +M+ GY K G                                
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDY------------------------------ 309

Query: 269 QTGRIDDAGRL-FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSI 326
                 DA RL F+ +  K+   W  +I  Y QNGK ++AL +FNE+ LS+  +PD+ ++
Sbjct: 310 ------DAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTL 363

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            S +S+CA+L ++  G  +H      G+  +  + S+L+DMY KCG  + A  VF  +  
Sbjct: 364 VSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEE 423

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R+V  W++MI G   +G+   A+ L+ ++ +  +KP+S TF +VL AC HA L + G+  
Sbjct: 424 RDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVF 483

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F  +  V+G+ P + HYACM+++LGR+  +++A++LI  +   P++ +W  LL  C++  
Sbjct: 484 FHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHM 543

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           +++ GE+A+  L +LEP N G  ++LSN+YA  GRWE V+ +R  M+   +KK    S I
Sbjct: 544 NVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSI 603

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE-KVKSIC 625
           E +  VH+F+  D THP +  IY +L ++  KL+  G+ PN   +L   +E++ K +++ 
Sbjct: 604 EANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALS 663

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+A+ L+       PIR++KN+R+CGDCH F K  S +  R I+LRD  RFHHF
Sbjct: 664 LHSEKLAIAFGLVTLAPS-QPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHF 722

Query: 686 VGGNCSCKDNW 696
             G+CSC D W
Sbjct: 723 RDGHCSCMDYW 733



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 158/290 (54%), Gaps = 11/290 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +  D+E  + + S+++    + + T L N +L  Y K G +  A+ LFD+MP RD+ S
Sbjct: 237 CAKKLDLEFGRWVCSYIERKGIKVDLT-LCNAMLDMYTKCGSVDDAQKLFDEMPERDVFS 295

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W  +L  +A+ G     R +F+ MP+++  ++N  I+ +   G  +EAL +F+ +Q  + 
Sbjct: 296 WTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKI 355

Query: 153 -EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            +P + T VS L+ACAQL  +  G  IH  I    +  N  + ++L DMYAK G ++KA 
Sbjct: 356 AKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKAL 415

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F  +  R++  W+ MI+G   +G+ K  IDLF EMQ   + P+ VT +N+L AC   G
Sbjct: 416 EVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAG 475

Query: 272 RIDDAGRLFH-------VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
            +D+    FH       V+ E  +      I+G  + G  E+A+ L NEM
Sbjct: 476 LVDEGRVFFHEMEPVYGVVPEMKHYACMVDILG--RAGFLEEAMELINEM 523



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 186/427 (43%), Gaps = 108/427 (25%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           +A +L   MDL        ++ N L+ FY   G L  A  LF  +  +D++SWN+++SA 
Sbjct: 151 MAIKLSFGMDL--------YILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAF 202

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
           A+    +D                               AL++F +M+++   P   T V
Sbjct: 203 AQGNCPED-------------------------------ALELFLKMERENVMPNSVTMV 231

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
             L+ACA+ LDL  G+ +   I    +  ++ + NA+ DMY K G +D A+ LFD M  R
Sbjct: 232 GVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER 291

Query: 221 NLVSWNLMISGYLK-------------------------------NGQPKKCIDLFQEMQ 249
           ++ SW +M+ GY K                               NG+PK+ + +F E+Q
Sbjct: 292 DVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQ 351

Query: 250 LLGL-NPDEVTVSNILGACFQTGRIDDAG------------------------------- 277
           L  +  PDEVT+ + L AC Q G ID  G                               
Sbjct: 352 LSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSL 411

Query: 278 ----RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F+ ++E+D   W+ MI G   +G+ + A+ LF EM    V+P+  + ++V+ +C
Sbjct: 412 EKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCAC 471

Query: 334 AKLASLYHGQV-VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS- 391
           +    +  G+V  H    V GV  ++   + ++D+  + G  ++A  + N M T    S 
Sbjct: 472 SHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASV 531

Query: 392 WNSMING 398
           W +++  
Sbjct: 532 WGALLGA 538



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 166/353 (47%), Gaps = 16/353 (4%)

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----FQ 269
           F  +NN  L   + ++S   K    K+  ++   M   GL  D  + S +  A     F 
Sbjct: 14  FSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFS 73

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS--EDVRPDKFSIS 327
           T  +D A  LF  I + +   W T+I  Y  +     + ++F ++L   ED+ P+KF+  
Sbjct: 74  T--LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDL-PNKFTFP 130

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            V+ + ++L +   G  VHG A+ L    DL + ++L+  Y  CG    A  +F  +  +
Sbjct: 131 FVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCK 190

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSWNSMI+ +AQ     +AL L+ K+ +EN+ P+S T V VLSAC      E G+   
Sbjct: 191 DVVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVC 250

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
             I    GI   L     M+++  +   VD A  L   +P + +   W+ +L   A  GD
Sbjct: 251 SYIER-KGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER-DVFSWTIMLDGYAKMGD 308

Query: 508 IKHGEMAARHLFELEPINA-GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
                 AAR +F   P+     + +L + Y   G+ ++  +I + ++   + K
Sbjct: 309 YD----AARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAK 357


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 328/589 (55%), Gaps = 36/589 (6%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           ++    M ++R      T+   +  C     +++ + +H  +         F+ N L +M
Sbjct: 1   MKAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINM 60

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G +D+AR LFD M +RN+VSW  MIS Y  +    K +D    M   G+ P+  T 
Sbjct: 61  YVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTY 120

Query: 261 SNILGAC--------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           S++L AC                                 + G   DA  +F+ +   D 
Sbjct: 121 SSVLRACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDL 180

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W ++I G+ QN   ++ L L+  M   D   D+ +++SV+ +C  LA L  G+ VH  
Sbjct: 181 VVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVH-- 238

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-MMPTRNVVSWNSMINGYAQNGQDLE 407
             VL  D DL++++AL+DMYCKCG  +DA  +F  MM  ++V+SW++MI G AQNG   +
Sbjct: 239 VHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSAD 298

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           AL L++ +  +  KP+  T + VL AC HA L   G  +F S+    GI P  +HY C+I
Sbjct: 299 ALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCII 358

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  +D+AV LI  + H+P+++ W  LL  C +  ++     AA+ + +L+P +AG
Sbjct: 359 DLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAG 418

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            YI+LSN+YA   +WEDVA +R  M+++ VKK    SWIE+  +VH F+  D +HP  E 
Sbjct: 419 TYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEE 478

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I  ELS+LI++L   G+ P+T  VL D + E+   S+ YHSEKLA+ + L+  P+  T I
Sbjct: 479 IKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKT-I 537

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I KN+R+CGDCH+F K  S +  R I++RD  R+HHF GG CSC D W
Sbjct: 538 HIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 204/467 (43%), Gaps = 116/467 (24%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +A++ ++    +A    Y++L+  C     V+ A+ +  H+  N YEP T FL N L++ 
Sbjct: 2   KAMEAMHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKT-FLINTLINM 60

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y K G L  AR+                               LFD+MP R+ VS+ T I
Sbjct: 61  YVKFGLLDEARN-------------------------------LFDEMPDRNVVSWTTMI 89

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           + ++N   + +AL     M ++   P  YT+ S L AC  LL+LR   Q+HG I+   L 
Sbjct: 90  SAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLE 146

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VFVR+AL D Y+K GE   A  +F+ M   +LV WN +I G+ +N    + + L++ M
Sbjct: 147 SDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRM 206

Query: 249 QLLGLNPDEVTVSNILGACF---------------------------------QTGRIDD 275
           +      D+ T++++L AC                                  + G ++D
Sbjct: 207 KRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLED 266

Query: 276 AGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           A  LF  ++ EKD + W+TMI G  QNG   DAL LF  M S+  +P+  +I  V+ +C+
Sbjct: 267 ANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACS 326

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-------PTR 387
                                                G+ +D W  F  M       P R
Sbjct: 327 -----------------------------------HAGLVNDGWYYFQSMKEHFGIDPGR 351

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
               +  +I+   + G+  EA+ L  ++   N +PD+ T+  +L AC
Sbjct: 352 E--HYGCIIDLLGRAGKLDEAVKLIHEM---NHEPDAVTWRILLGAC 393


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/691 (33%), Positives = 367/691 (53%), Gaps = 78/691 (11%)

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           K+ YA+DLF +         N+L+  +A  G +   R +FD+M  R+ VS+ + I G+A 
Sbjct: 162 KMGYAKDLFVQ---------NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212

Query: 134 KGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           + F+++A+ +F RM +D    P   T V  ++ACA+L DL  G++++  I    +  N  
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           + +AL DMY K   ID A+ LFD     NL   N M S Y++ G  ++ + +F  M   G
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG 332

Query: 253 LNPDEVTVSNILGACFQTGRI-----------------------------------DDAG 277
           + PD +++ + + +C Q   I                                   D A 
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKE-------------------------------ED 306
           R+F  +  K  V W +++ GY +NG+                                E+
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 307 ALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           A+ +F  M S E V  D  ++ S+ S+C  L +L   + ++      G+  D+ + + L+
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DM+ +CG  + A ++FN +  R+V +W + I   A  G    A+ L+D ++++ LKPD  
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
            FV  L+AC H  L ++G+  F S+  +HG++P   HY CM++LLGR+  +++AV LI+ 
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +PN +IW++LL+ C ++G+++    AA  +  L P   G Y++LSN+YA+ GRW D+
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R SMK K ++K    S I+I  K H+F S D +HPE   I   L ++ ++    G  
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VL D  E+EK+  +  HSEKLA+AY LI    G T IRI+KN+RVC DCH F KF
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTT-IRIVKNLRVCSDCHSFAKF 811

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           AS +  R IILRD+NRFH+   G CSC D W
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 184/369 (49%), Gaps = 40/369 (10%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN+ I G+A+ G   EA+ +F RM      P  YT    L+ACA+      G QIHG IV
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 ++FV+N+L   YA+ GE+D AR +FD M+ RN+VSW  MI GY +    K  +D
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 244 LFQEM-QLLGLNPDEVTVSNILGAC-----FQTGR------------------------- 272
           LF  M +   + P+ VT+  ++ AC      +TG                          
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 273 -----IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                ID A RLF      +      M   Y + G   +AL +FN M+   VRPD+ S+ 
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S +SSC++L ++  G+  HG  +  G +    + +ALIDMY KC   D A+ +F+ M  +
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            VV+WNS++ GY +NG+   A   ++ + ++N+     ++ +++S  +   LFE     F
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVF 457

Query: 448 DSISAVHGI 456
            S+ +  G+
Sbjct: 458 CSMQSQEGV 466



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 168/352 (47%), Gaps = 35/352 (9%)

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL----VSWNLMISGYLKNGQPKKCIDL 244
           G  F+ N+L   YA  G  ++A  LF RM N  +     ++   +S   K+      I +
Sbjct: 97  GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
              +  +G   D    ++++    + G +D A ++F  + E++ V WT+MI GY +    
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216

Query: 305 EDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           +DA+ LF  M+  E+V P+  ++  V+S+CAKL  L  G+ V+      G++ + L+ SA
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KC   D A  +F+     N+   N+M + Y + G   EAL +++ ++   ++PD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 424 SFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
             + +S +S+C            H  +   G   +D+I               +I++  +
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA------------LIDMYMK 384

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEP 523
               D A  +   + +K   + W+++++     G +++GE+ AA   FE  P
Sbjct: 385 CHRQDTAFRIFDRMSNK-TVVTWNSIVA-----GYVENGEVDAAWETFETMP 430



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 148/307 (48%), Gaps = 10/307 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+++ ++   K    ++  N +E     + N L+  Y K  +   A  +FD+M  + +++
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDN-ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 405

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN++++ +  +G V      F+ MP ++ VS+NT I+G        EA++VF  MQ    
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465

Query: 153 EPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              D  T +S  +AC  L  L   K I+  I    +  +V +   L DM+++ G+ + A 
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ + NR++ +W   I      G  ++ I+LF +M   GL PD V     L AC   G
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 272 RIDDAGRLFHVIKE-----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +     +F+ + +      ++V +  M+    + G  E+A+ L  +M  E   P+    
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME---PNDVIW 642

Query: 327 SSVVSSC 333
           +S++++C
Sbjct: 643 NSLLAAC 649


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/645 (35%), Positives = 356/645 (55%), Gaps = 49/645 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ--VFSR 146
           D+    ALL  + +   + D   +F  MP RD V++N  +AG+A+ G    A+   +  +
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQ 103

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN----------VFVRNA 196
           MQ  R  P   T V+ L   AQ   L +G  +H   +   L  N          V +  A
Sbjct: 104 MQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTA 163

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN-P 255
           L DMYAK G +  AR +FD M  RN V+W+ +I G++   +  +   LF+ M   GL   
Sbjct: 164 LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFL 223

Query: 256 DEVTVSNILGAC-----------------------------------FQTGRIDDAGRLF 280
              ++++ L AC                                    + G ID A  LF
Sbjct: 224 SPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALF 283

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             +  KD V ++ ++ GY QNG+ E+A ++F +M + +V PD  ++ S++ +C+ LA+L 
Sbjct: 284 DEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQ 343

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HG+  HG  ++ G+  +  + +ALIDMY KCG  D +  VFNMMP+R++VSWN+MI GY 
Sbjct: 344 HGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYG 403

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   EA AL+ ++      PD  TF+ +LSAC H+ L   G++ F  +   +G+TP +
Sbjct: 404 IHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRM 463

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HY CM++LL R   +D+A + I+S+P + +  +W  LL  C +  +I  G+  +R + E
Sbjct: 464 EHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQE 523

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
           L P   G +++LSN+Y+A GR+++ A +R   K +  KK    SWIEI+  +H FV  D+
Sbjct: 524 LGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQ 583

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK 640
           +HP++  IY EL  ++  +++ G+ P+T  VL D +EEEK K++  HSEKLA+AY ++  
Sbjct: 584 SHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSL 643

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
               T I + KN+RVCGDCH  +K  S +  R II+RD+NRFHHF
Sbjct: 644 SEDKT-IFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 188/408 (46%), Gaps = 50/408 (12%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M + R  P +YT   AL AC+ L D   G+ IH   +   L  ++FV  AL DMY K   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID--LFQEMQLLGLNPDEVTVSNIL 264
           +  A  +F  M  R+LV+WN M++GY  +G     +   L  +MQ+  L P+  T+  +L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 265 GACFQTGRIDD---------------------------------------------AGRL 279
               Q G +                                               A R+
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLAS 338
           F  +  ++ V W+ +I G+    +   A +LF  ML++ +      SI+S + +CA L  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDH 240

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H      GV  DL   ++L+ MY K G+ D A  +F+ M  ++ VS++++++G
Sbjct: 241 LRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSG 300

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           Y QNG+  EA  ++ K+   N++PD+ T VS++ AC H    + G+    S+  + G+  
Sbjct: 301 YVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSV-IIRGLAS 359

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
                  +I++  +   +D +  +   +P + + + W+T+++   + G
Sbjct: 360 ETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIHG 406



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 142/294 (48%), Gaps = 38/294 (12%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  ++ + + ++L + +  +    + T   N LL  YAK+G +  A  LFD+M ++D +S
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHADLT-AGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS 293

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           ++AL+S                               G+   G + EA  VF +MQ    
Sbjct: 294 YSALVS-------------------------------GYVQNGRAEEAFLVFKKMQACNV 322

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           EP   T VS + AC+ L  L+ G+  HG +++  L     + NAL DMYAK G ID +R 
Sbjct: 323 EPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQ 382

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ M +R++VSWN MI+GY  +G  K+   LF EM  LG  PD VT   +L AC  +G 
Sbjct: 383 VFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGL 442

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM-LSEDVR 320
           + +    FHV+     +      +  M+   ++ G  ++A      M L  DVR
Sbjct: 443 VIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVR 496



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 149/361 (41%), Gaps = 63/361 (17%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL--I 309
           GL  D    + +L    +   + DA  +F  +  +D V W  M+ GY  +G    A+  +
Sbjct: 40  GLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHL 99

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----------GVDDDLL 359
           L  +M    +RP+  ++ +++   A+  +L  G  VH   +             + D +L
Sbjct: 100 LSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVL 159

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL+DMY KCG    A  VF+ MP RN V+W+++I G+    +  +A  L+  +L + 
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219

Query: 420 ---LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              L P S    S L AC   D    G+    ++ A  G+   L     ++++  ++  +
Sbjct: 220 LCFLSPTSIA--SALRACASLDHLRMGEQ-LHALLAKSGVHADLTAGNSLLSMYAKAGLI 276

Query: 477 DKAVDLIKSLPHK----------------------------------PNSLIWSTLLSVC 502
           D+A+ L   +  K                                  P++    +L+  C
Sbjct: 277 DQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336

Query: 503 A-----MKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           +       G   HG +  R L  E    NA     L +MYA CGR +    + + M S++
Sbjct: 337 SHLAALQHGRCSHGSVIIRGLASETSICNA-----LIDMYAKCGRIDLSRQVFNMMPSRD 391

Query: 557 V 557
           +
Sbjct: 392 I 392



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 96/229 (41%), Gaps = 46/229 (20%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK G++  +R +F+ MP RDI+SWN                        
Sbjct: 361 TSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWN------------------------ 396

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                  T IAG+   G  +EA  +F  M    F P   T +  L+AC+    +  GK  
Sbjct: 397 -------TMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-- 447

Query: 179 HGKIVVGNLGGNVFVRN----ALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISG-- 231
           H   V+G+ G  +  R      + D+ ++GG +D+A      M  R ++  W  ++    
Sbjct: 448 HWFHVMGH-GYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACR 506

Query: 232 -YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
            Y      KK   + QE+   G   + V +SNI  A    GR D+A  +
Sbjct: 507 VYKNIDLGKKVSRMIQELGPEGTG-NFVLLSNIYSA---AGRFDEAAEV 551


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 234/681 (34%), Positives = 369/681 (54%), Gaps = 82/681 (12%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMP-LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           N LL+ Y K G L +A+ +F KM   R++ISW+ +  AHA  G+V               
Sbjct: 184 NALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVW-------------- 229

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
                            EAL+ F  M     + T    V+ L+AC+    ++ G+ IH  
Sbjct: 230 -----------------EALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSC 272

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPK 239
           I +      + V NA+  MY + G +++AR +FD M+   R++VSWN+M+S Y+ N + K
Sbjct: 273 IALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGK 332

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQT-----GRI--------------------- 273
             I L+Q MQL     D+VT  ++L AC        GR+                     
Sbjct: 333 DAIQLYQRMQL---RADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALV 389

Query: 274 ---------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-------SE 317
                     +A  +F  ++++  + WTT+I  Y +     +A  LF +ML       S+
Sbjct: 390 SMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQ 449

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            V+PD  +  +++++CA +++L  G++V  +A   G+  D  V +A++++Y KCG  ++ 
Sbjct: 450 RVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEG 509

Query: 378 WTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
             +F+ + +R +V  WN+MI  YAQ GQ  EAL L+ ++  E ++PDSF+FVS+L AC H
Sbjct: 510 RRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSH 569

Query: 437 ADLFERGQNHFDSISAVH-GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
             L ++G+++F S++  +  +T ++ H+ C+ +LLGR   + +A + ++ LP KP+++ W
Sbjct: 570 TGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAW 629

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
           ++LL+ C    D+K  +  A  L  LEP  A  Y+ LSN+YA   +W  VA +R  M  +
Sbjct: 630 TSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQ 689

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            VKK    S IEI   +H F + D  HP    I EEL+KL  +++E G+ P+TK+VLH  
Sbjct: 690 GVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFV 749

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
            E+EK + +  HSE+LA+A  LI  P G TP+R+ KN+RVC DCH   K  S I GR I+
Sbjct: 750 DEQEKERLLFSHSERLAIALGLISTPLG-TPLRVTKNLRVCSDCHTATKLISKIAGRKIV 808

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD  RFH F  G CSC+D W
Sbjct: 809 VRDPTRFHLFKDGKCSCQDYW 829



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 243/494 (49%), Gaps = 50/494 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++I  N ++S +A   S  D +A FD +  R+  S+   +A FA  G S+E L+   RM+
Sbjct: 78  NLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR 137

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +D   P   T ++AL +C     LR G +IH  +V   L  +  V NAL +MY K G + 
Sbjct: 138 QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLS 197

Query: 209 KARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            A+ +F +M   RN++SW++M   +  +G   + +  F+ M LLG+   +  +  IL AC
Sbjct: 198 HAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSAC 257

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKE--KDNVC 290
                 Q GR                              +++A ++F  + E  +D V 
Sbjct: 258 SSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVS 317

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  M+  Y  N + +DA+ L+  M    +R DK +  S++S+C+    +  G+V+H + V
Sbjct: 318 WNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIV 374

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              ++ +++V +AL+ MY KCG   +A  VF+ M  R+++SW ++I+ Y +     EA  
Sbjct: 375 NDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACH 434

Query: 411 LYDKLLQ-------ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           L+ ++L+       + +KPD+  FV++L+AC      E+G+      +A  G++      
Sbjct: 435 LFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGK-MVSEQAASCGLSSDKAVG 493

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
             ++NL G+  ++++   +   +  +P+  +W+ +++V A  G   H  +      E+E 
Sbjct: 494 TAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQ-SHEALKLFWRMEMEG 552

Query: 524 INAGPYIMLSNMYA 537
           +    +  +S + A
Sbjct: 553 VRPDSFSFVSILLA 566



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 210/478 (43%), Gaps = 83/478 (17%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL-GGNVFVRNALTDMYAKGG 205
           ++K      + T+   L  CA+   L  G++IH   V  NL  GN+ + N +  MYA   
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
               A+  FD +  RNL SW  +++ +  +GQ K+ +   + M+  G+ PD VT    LG
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 266 ACF-----------------------------------QTGRIDDAGRLFHVIKEKDNV- 289
           +C                                    + G +  A R+F  ++   NV 
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVI 213

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W+ M   +  +G   +AL  F  ML   ++  K ++ +++S+C+  A +  G+++H   
Sbjct: 214 SWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCI 273

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDLE 407
            + G + +LLV++A++ MY +CG  ++A  VF+ M    R+VVSWN M++ Y  N +  +
Sbjct: 274 ALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKD 333

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHAD----------------------------- 438
           A+ LY ++    L+ D  T+VS+LSAC  A+                             
Sbjct: 334 AIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVS 390

Query: 439 LFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--------- 488
           ++ +  +H ++ +    +   S+  +  +I+   R   V +A  L + +           
Sbjct: 391 MYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQR 450

Query: 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWED 544
            KP++L + T+L+ CA    ++ G+M +          +      + N+Y  CG  E+
Sbjct: 451 VKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEE 508



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 154/329 (46%), Gaps = 38/329 (11%)

Query: 14  LYSRGQ-AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           LY R Q  A +  Y  L+  C+   DV L + L   +  +  E N   + N L+  YAK 
Sbjct: 337 LYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNV-IVGNALVSMYAKC 395

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G    AR +FDKM  R IISW  ++SA+ R   V +   LF +M                
Sbjct: 396 GSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQM---------------- 439

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                   L++       R +P     V+ LNACA +  L +GK +  +     L  +  
Sbjct: 440 --------LELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKA 491

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLL 251
           V  A+ ++Y K GEI++ R +FD + +R  V  WN MI+ Y + GQ  + + LF  M++ 
Sbjct: 492 VGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEME 551

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLF--HVIKEKDNVCWTTMIVGYT-----QNGKE 304
           G+ PD  +  +IL AC  TG ++D G+ +   +  E  NV  T    G       + G+ 
Sbjct: 552 GVRPDSFSFVSILLACSHTG-LEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRL 610

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSC 333
           ++A     ++    V+PD  + +S++++C
Sbjct: 611 KEAEEFLEKL---PVKPDAVAWTSLLAAC 636


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 334/595 (56%), Gaps = 40/595 (6%)

Query: 140 ALQVFSRMQKDRF--EPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
           A Q+  + + D F   P++ Y + S L +C     L  GKQ+H ++    +  N+ +   
Sbjct: 39  ATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATK 98

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L + Y+    +  A  LFD++   NL  WN++I  Y  NG  +  I L+ +M   GL PD
Sbjct: 99  LVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPD 158

Query: 257 EVTVSNILGAC-----------------------------------FQTGRIDDAGRLFH 281
             T+  +L AC                                    + G + DA  +F 
Sbjct: 159 NFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFD 218

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            I ++D V W +M+  Y QNG  +++L L  EM ++ VRP + ++ +V+SS A +A L H
Sbjct: 219 KIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPH 278

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +HG     G   +  V +ALIDMY KCG    A  +F  +  + VVSWN++I GYA 
Sbjct: 279 GREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAM 338

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G  +EAL L++++++E  +PD  TFV  L+AC    L + G+  ++ +     I P+++
Sbjct: 339 HGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVE 397

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           HY CM++LLG    +D+A DLI+ +   P+S +W  LL+ C   G+++  E+A   L EL
Sbjct: 398 HYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIEL 457

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           EP ++G Y++L+NMYA  G+WE VA +R  M  K +KK  A SWIE+ NKV+ F+S D +
Sbjct: 458 EPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVS 517

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKP 641
           HP +  IY EL +L   ++EAG+ P+T  V HD +E+EK   +C HSE+LA+A+ LI   
Sbjct: 518 HPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTL 577

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G T + I KN+R+C DCH+ +KF S I  R I +RD NR+HHF  G CSC D W
Sbjct: 578 PG-TRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 195/437 (44%), Gaps = 76/437 (17%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C     +E  K+L + +       N   L  +L++FY+    L  A  LFDK+
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLD-LATKLVNFYSVCNSLRNAHHLFDKI 119

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P  ++  WN L+ A+A +G                   + TAI+             ++ 
Sbjct: 120 PKGNLFLWNVLIRAYAWNG------------------PHETAIS-------------LYH 148

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M +   +P ++T    L AC+ L  +  G+ IH +++      +VFV  AL DMYAK G
Sbjct: 149 QMLEYGLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCG 208

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  AR +FD++ +R+ V WN M++ Y +NG P + + L  EM   G+ P E T+  ++ 
Sbjct: 209 CVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVIS 268

Query: 266 -----ACFQTGR------------------------------IDDAGRLFHVIKEKDNVC 290
                AC   GR                              +  A  LF  ++EK  V 
Sbjct: 269 SSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVS 328

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  +I GY  +G   +AL LF  M+ E  +PD  +    +++C++   L  G+ ++   V
Sbjct: 329 WNAIITGYAMHGLAVEALDLFERMMKE-AQPDHITFVGALAACSRGRLLDEGRALYNLMV 387

Query: 351 V-LGVDDDLLVSSALIDMYCKCGVTDDAWTVF---NMMPTRNVVSWNSMINGYAQNGQDL 406
               ++  +   + ++D+   CG  D+A+ +    ++MP   V  W +++N    +G   
Sbjct: 388 RDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGV--WGALLNSCKTHGNVE 445

Query: 407 EALALYDKLLQENLKPD 423
            A    +KL++  L+PD
Sbjct: 446 LAEVALEKLIE--LEPD 460



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/277 (31%), Positives = 141/277 (50%), Gaps = 15/277 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD+    AL+  +A+ G V D R +FDK+  RD+V +N+ +A +A  G   E+L +   M
Sbjct: 192 RDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEM 251

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                 PT+ T V+ +++ A +  L  G++IHG         N  V+ AL DMYAK G +
Sbjct: 252 AAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSV 311

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  LF+R+  + +VSWN +I+GY  +G   + +DLF+ M +    PD +T    L AC
Sbjct: 312 KVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERM-MKEAQPDHITFVGALAAC 370

Query: 268 FQTGRIDDAGRLFHVIKEKDNVC--------WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
              GR+ D GR  + +  +D  C        +T M+      G+ ++A  L  +M   DV
Sbjct: 371 -SRGRLLDEGRALYNLMVRD--CRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQM---DV 424

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            PD     ++++SC    ++   +V   K + L  DD
Sbjct: 425 MPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDD 461


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 203/525 (38%), Positives = 306/525 (58%), Gaps = 39/525 (7%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--------------------- 248
           AR LFDRM  R+  SW+ ++S ++++GQP+  + +++ M                     
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAA 171

Query: 249 -----------------QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
                               G++ D V  S +     + GR+DDA  +F  +  +D V W
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSW 231

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T M+  Y   G++ +   LF  M+   + P++F+ + V+ +CA+  S   G+ VHG+   
Sbjct: 232 TAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAK 291

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
               D     SAL+ MY K G    A  VF  MP  ++VSW +MI+GYAQNGQ  EAL  
Sbjct: 292 SRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHC 351

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +D LL    +PD  TFV VLSAC HA L ++G   F SI   +GI  + DHYAC+I+LL 
Sbjct: 352 FDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLS 411

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS   ++A D+I ++P KPN  +W++LL  C +  +++    AA  LFE+EP N   Y+ 
Sbjct: 412 RSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVT 471

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N+YA+ G +++V ++R +M+ + + K  A SWIE+  +VH F+  D++HP+ E IY  
Sbjct: 472 LANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYAL 531

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L KL  K++E G+  +T  VLHD ++E+K + I YHSE+LA+A+ +I  P G +PI++ K
Sbjct: 532 LKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKG-SPIKVFK 590

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R+CGDCH  +K  S I+ R II+RDSNRFHHF  G+CSC+D W
Sbjct: 591 NLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 183/389 (47%), Gaps = 48/389 (12%)

Query: 55  EPNTTFLHNRLLHFYAK-SGKLFYARDLFDKMPLRDIISWNALLSAHARSG-SVQDLRAL 112
            P +T L NR+LH  +     L  A  L   +P  D+ S+N L++A  RS   +   RAL
Sbjct: 56  RPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARAL 115

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP------TDYTHVSALNAC 166
           FD+MP RD  S++  ++     G  R AL ++ RM +   EP       ++T  SAL A 
Sbjct: 116 FDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLR---EPGGSGADNEFTASSALAAA 172

Query: 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
                 R G+++H  +V   +  +  V +AL DMYAK G +D AR +FDRM  R++VSW 
Sbjct: 173 TAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWT 232

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------- 269
            M+  Y   G+  +   LF  M   G+ P+E T + +L AC +                 
Sbjct: 233 AMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKS 292

Query: 270 ------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                              G +  A R+F  + + D V WT MI GY QNG+ ++AL  F
Sbjct: 293 RTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCF 352

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           + +LS   RPD  +   V+S+CA    +  G  + H      G++      + +ID+  +
Sbjct: 353 DMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSR 412

Query: 371 CGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            G+ + A  + N MP + N   W S++ G
Sbjct: 413 SGLFERAEDMINTMPVKPNKFLWASLLGG 441



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W+AL   +A+ G + D R++FD+MP+RD VS+   +  + + G   E  ++F RM 
Sbjct: 196 DAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMM 255

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P ++T+   L ACA+    + GKQ+HG++     G + F  +AL  MY+K G++ 
Sbjct: 256 RSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMG 315

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  M   +LVSW  MISGY +NGQP + +  F  +   G  PD VT   +L AC 
Sbjct: 316 TAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACA 375

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTT-----MIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +D    +FH IK+K  +  T      +I   +++G  E A  + N M    V+P+K
Sbjct: 376 HAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTM---PVKPNK 432

Query: 324 FSISSVVSSC 333
           F  +S++  C
Sbjct: 433 FLWASLLGGC 442


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/717 (32%), Positives = 383/717 (53%), Gaps = 83/717 (11%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-TFLHNRLLHFYAKSGKL 75
           R  + T E   + VL C  +    L++R+    ++    P+    L+ +++  Y +S +L
Sbjct: 27  RSFSVTVEFQNREVLICNHL----LSRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRL 82

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
             A +LFD+MP+RD++SWN+++S     G +     LFD+MP R  VS+   + G    G
Sbjct: 83  VDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEMPERSVVSWTAMVNGCFRSG 142

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              +A ++F +M      P   T  +A N+            +HG               
Sbjct: 143 KVDQAERLFYQM------PVKDT--AAWNS-----------MVHG--------------- 168

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
                Y + G++D A  LF +M  +N++SW  MI G  +N +  + +DLF+ M    +  
Sbjct: 169 -----YLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKS 223

Query: 256 DEVTVSNILGAC-----FQTG------------------------------RIDDAGRLF 280
                + ++ AC     F  G                              RI D+ ++F
Sbjct: 224 TSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVF 283

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
                +    WT ++ GY+ N K EDAL +F+ ML   + P++ + +S ++SC+ L +L 
Sbjct: 284 DEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLD 343

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            G+ +HG AV LG++ D  V ++L+ MY   G  +DA +VF  +  +++VSWNS+I G A
Sbjct: 344 WGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCA 403

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA-VHGITPS 459
           Q+G+   A  ++ ++++ N +PD  TF  +LSAC H    E+G+  F  +S+ ++ I   
Sbjct: 404 QHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRK 463

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           + HY CM+++LGR   + +A +LI+ +  KPN ++W  LLS C M  D+  GE AA  +F
Sbjct: 464 IQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIF 523

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
            L+  ++  Y++LSN+YA+ GRW +V+ +R  MK   + K    SW+ I  K H+F S D
Sbjct: 524 NLDSKSSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGD 583

Query: 580 RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
           +  P    IYE+L  L +KL+E G++P+ +  LHD ++E+K + + YHSE+LA+A+ LI 
Sbjct: 584 Q--PHCSRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLIN 641

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              G + + +MKN+RVC DCH  +K  S ++GR I+LRD  RFHHF  G CSC D W
Sbjct: 642 TVEG-SAVTVMKNLRVCEDCHTVIKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 337/606 (55%), Gaps = 67/606 (11%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           + WNAL+S H RSG                   +  +   F +             M + 
Sbjct: 127 VMWNALISGHNRSG------------------RFELSCCSFVD-------------MVRA 155

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
               T  T+VS L+AC +  DL  G Q+H +++   +  +  V NAL DMYA+ G++D A
Sbjct: 156 SAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAA 215

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
             LF+ M  R++ SW  +ISG +++GQ  +  DLF  M                      
Sbjct: 216 WVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHM---------------------- 253

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                         E+D + WT MI GY Q G+  DAL  F  M    VR D+F++ SVV
Sbjct: 254 -------------PERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVV 300

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA+L +L  G+        LG+  D+ V +ALIDMY KCG  + A  VF  M  R+  
Sbjct: 301 TACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKF 360

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           +W ++I G A NG+  EA+ ++ ++L+    PD  TFV VL+AC HA L ++G+  F S+
Sbjct: 361 TWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSM 420

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           +  + I+P++ HY C+I++LGR+  + +A+D I  +P KPNS IW TLL+ C + G+ + 
Sbjct: 421 TEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEI 480

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE+AA  L EL+P N+  YI+LSNMYA   RW+DV  IR  +  K +KK    S IE++ 
Sbjct: 481 GELAAERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNG 540

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            +H+FV+ DR+HP  + IY +L  ++  L+ AG+ P+   VL +  EEEK K + +HSEK
Sbjct: 541 IIHEFVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEK 600

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+ + L+     V  IRI+KN+R+C DCH  +K  S + GR +I+RD  RFHHF  G+C
Sbjct: 601 LAVTFALLTSESNVI-IRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSC 659

Query: 691 SCKDNW 696
           SCKD W
Sbjct: 660 SCKDYW 665



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/320 (32%), Positives = 167/320 (52%), Gaps = 13/320 (4%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
           AT   Y  ++  C +  D+ L  ++   +  +   P+   + N L+  YA+ G +  A  
Sbjct: 159 ATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQR-VENALVDMYAECGDMDAAWV 217

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           LF+ M +R + SW +++S   RSG V   R LFD MP RD++++   I G+   G  R+A
Sbjct: 218 LFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDA 277

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRNALT 198
           L+ F  MQ  +    ++T VS + ACAQL  L  G+    +I +G LG   +VFV NAL 
Sbjct: 278 LETFRYMQICKVRADEFTMVSVVTACAQLGALETGEW--ARIYMGRLGIKMDVFVGNALI 335

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           DMY+K G I++A  +F  M+NR+  +W  +I G   NG+ ++ ID+F  M      PDEV
Sbjct: 336 DMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEV 395

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG-----YTQNGKEEDALILFNE 313
           T   +L AC   G +D     F  + E  N+  T +  G       + GK ++AL   ++
Sbjct: 396 TFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDK 455

Query: 314 MLSEDVRPDKFSISSVVSSC 333
           M    ++P+     ++++SC
Sbjct: 456 M---PMKPNSTIWGTLLASC 472



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 111/252 (44%), Gaps = 20/252 (7%)

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV-----VHGKAVVLGVDDDLL 359
           E+A+  +  ML+   RPD ++  S++ + A               +H   V  G++ +  
Sbjct: 33  EEAVAGYVRMLAGGARPDAYTFPSLLKAAAAARGAAVAAASVGGAIHAHVVKFGMESNAH 92

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRN----VVSWNSMINGYAQNGQ-DLEALALYDK 414
            +S+LI MY   G    A  V             V WN++I+G+ ++G+ +L   +  D 
Sbjct: 93  AASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHNRSGRFELSCCSFVD- 151

Query: 415 LLQENLKPDSFTFVSVLSACLHA-DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +++ +    + T+VSVLSAC    DL    Q H   + +  G+ P       ++++    
Sbjct: 152 MVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLES--GVLPDQRVENALVDMYAEC 209

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIML 532
            D+D A  L + +  +  +  W++++S     G +      AR LF+  P  +   +  +
Sbjct: 210 GDMDAAWVLFEGMQMRSMA-SWTSVISGLVRSGQVDR----ARDLFDHMPERDTIAWTAM 264

Query: 533 SNMYAACGRWED 544
            + Y   GR+ D
Sbjct: 265 IDGYVQVGRFRD 276


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 237/718 (33%), Positives = 383/718 (53%), Gaps = 85/718 (11%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNT-TFLHNRLLHFYAKSGKL 75
           R  + T E   + VL C  +    L +RL    ++    P+    L+ +++  Y +S +L
Sbjct: 27  RSYSVTVEFQNREVLICNHL----LNRRLDEAREVFDQVPSPHVSLYTKMISGYTRSNRL 82

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
             A +LFD+MPLRD++SWN+++S     G +     +FD+MP R  VS+   + G    G
Sbjct: 83  VDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEMPERSVVSWTAMVNGCFRFG 142

Query: 136 FSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
              +A ++F +M  KD         ++A NA            +HG              
Sbjct: 143 MVDQAERLFCQMPVKD---------IAAWNA-----------MVHG-------------- 168

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
                 Y + G++D A  LF +M  +N++SW  MI G  +N +  + ++LF+ M    + 
Sbjct: 169 ------YLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 255 PDEVTVSNILGAC-----FQTG------------------------------RIDDAGRL 279
               T + ++ AC     F  G                              R +D+ ++
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKV 282

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +  +    WT ++ GY+ N K EDAL +F+EM+   + P++ + +S ++SC+ L +L
Sbjct: 283 FGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTL 342

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ +HG AV LG+     V ++L+ MY   G  +DA +VF  +  +++VSWNS+I G 
Sbjct: 343 DWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGC 402

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA-VHGITP 458
           AQ+G+   A  ++ ++++ N +PD  TF  +LSAC H    ++G+  F  IS+ ++ I  
Sbjct: 403 AQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDR 462

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            + HY CM+++LGR  ++ +A  LI+S+  KPN ++W  LLS C M  D+  GE AA  +
Sbjct: 463 KIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAI 522

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
           F L+  ++  Y++LSN+YA+ GRW  V+ +R  MK K + K    SW+ I  K H+F S 
Sbjct: 523 FNLDSKSSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSG 582

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           DR  P    I+E+L  L +KL+E G+ P+ +  LHD ++E+K + + YHSE+LA+A+ LI
Sbjct: 583 DR--PHCLRIFEKLEFLREKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLI 640

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               G T + +MKN+RVC DCH  +K  S ++G  I+LRD  RFHHF  G CSC D W
Sbjct: 641 NTVEGST-VTVMKNLRVCEDCHTVIKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/645 (34%), Positives = 346/645 (53%), Gaps = 37/645 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R ++    +  A+ + GS+      F+ +   +  S+NT +A  +      + LQ+F RM
Sbjct: 45  RSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRM 104

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            K+      +  V A+ AC  L   +  K  H   +   L G+ +V  AL ++Y + G +
Sbjct: 105 LKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSL 164

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A  +F+ +  +N V W +MI G+L   +     +LF  M+  G   D   V  ++ AC
Sbjct: 165 EEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQAC 224

Query: 268 ------------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
                                                + G +D A +LF  I  +D V W
Sbjct: 225 GNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVW 284

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + +I G+ +NG+  +++ +F +ML++ V P+  + +S+V +C+ L SL  G+ VHG  + 
Sbjct: 285 SAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIR 344

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            GV+ D+   ++ IDMY KCG    A+ VF  +P +NV SW++MING+  +G   EAL L
Sbjct: 345 NGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNL 404

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + ++   N  P+S TFVSVLSAC H+   E G +HF S+S  +GITP  +HYACM++LLG
Sbjct: 405 FYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLG 464

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +D+A+  I ++P +P +  W  LL  C +    +  E  A+ L  LE   +G Y+M
Sbjct: 465 RAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVM 524

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G WE V   R  M  K + K   ++ IEI+ K++ F SEDR   +   I   
Sbjct: 525 LSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESL 584

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
            + L ++++E G+ P+ + VLHD  +E K + +C HSEKLA+ + L+    G+ PIRI K
Sbjct: 585 WNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGM-PIRITK 643

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVCGDCH   KF S I  R II+RD  RFHH   G CSC D W
Sbjct: 644 NMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGDYW 688



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/447 (23%), Positives = 200/447 (44%), Gaps = 52/447 (11%)

Query: 153 EPTDYTHVSALNACAQLLDLRR-------GKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           EP  +  +S+ N    LL L R         Q++ +I+V  L  ++     +   Y + G
Sbjct: 2   EPNPFPPISSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLG 61

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A   F+ +   NL SWN +++ + KN      + LF+ M   G   D   +   + 
Sbjct: 62  SLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVK 121

Query: 266 ACF-----------------------------------QTGRIDDAGRLFHVIKEKDNVC 290
           ACF                                   + G +++A ++F  +  K++V 
Sbjct: 122 ACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVI 181

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  MI G+    +E     LF+ M       D F +  ++ +C  + +   G+  HG  +
Sbjct: 182 WGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCI 241

Query: 351 VLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
               +D +  + ++L+DMY KCG  D A  +F  +  R+VV W+++I G+A+NG+ LE++
Sbjct: 242 KKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESI 301

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           +++ ++L +++ P+S TF S++ AC      ++G++        +G+   + +Y   I++
Sbjct: 302 SMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRS-VHGYMIRNGVELDVKNYTSFIDM 360

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP- 528
             +   +  A  +   +P K N   WST+++   M G       A    +E+  +N  P 
Sbjct: 361 YAKCGCIVTAYRVFCQIPEK-NVFSWSTMINGFGMHGLCAE---ALNLFYEMRSVNQLPN 416

Query: 529 YIMLSNMYAAC---GRWEDVASIRSSM 552
            +   ++ +AC   GR E+  S   SM
Sbjct: 417 SVTFVSVLSACSHSGRIEEGWSHFKSM 443



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 135/271 (49%), Gaps = 8/271 (2%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           +  K GK F+   +       +     +L+  + + G +     LF+++  RD V ++  
Sbjct: 228 YAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAI 287

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           IAGFA  G + E++ +F +M  D   P   T  S + AC+ L  L++G+ +HG ++   +
Sbjct: 288 IAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGV 347

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +V    +  DMYAK G I  A  +F ++  +N+ SW+ MI+G+  +G   + ++LF E
Sbjct: 348 ELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYE 407

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNG 302
           M+ +   P+ VT  ++L AC  +GRI++    F  +     +      +  M+    + G
Sbjct: 408 MRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAG 467

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           K ++AL   N M +E   P   +  +++ +C
Sbjct: 468 KIDEALSFINNMPTE---PGASAWGALLGAC 495


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/616 (36%), Positives = 335/616 (54%), Gaps = 58/616 (9%)

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           R AL  ++ M+K   E   +   S L AC+Q+   R GK+IHG  V   L  +VFV NAL
Sbjct: 91  RYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNAL 150

Query: 198 TDMYAKGGEIDKARWLFDRMNNRN----------------------LVSWNLMISGYLKN 235
             MY++ G +  AR LFD+M+ R+                      +VSW  MI+GY++ 
Sbjct: 151 MQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRC 210

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
              ++   LF  M    + P+++T+ +++ +C                            
Sbjct: 211 NDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALA 270

Query: 269 --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G I  A  +F  +K KD + WT MI  Y Q    + A  LF +M    VR
Sbjct: 271 TALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVR 330

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P++ ++ S++S CA   +L  G+  H      GV+ D+++ +ALIDMY KCG    A  +
Sbjct: 331 PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRL 390

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+    R++ +WN M+ GY  +G   +AL L+ ++    +KP+  TF+  L AC HA L 
Sbjct: 391 FSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLV 450

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
             G+  F+ +    G+ P ++HY CM++LLGR+  +D+A  +I+S+P  PN  IW  +L+
Sbjct: 451 VEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLA 510

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C +  +   GE+AAR L  LEP N G  +++SN+YAA  RW DVA +R ++K   +KK 
Sbjct: 511 ACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKE 570

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              S IE++  VH F   D  HP  E I E L+++ KKL+EAG+ P+T +VLH+  EEEK
Sbjct: 571 PGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEK 630

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
             ++ YHSEKLA+A+ LI    G TPIR++KN+R+C DCH   K  S I  R II+RD N
Sbjct: 631 ETALNYHSEKLAMAFGLISTAPG-TPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRN 689

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  G+CSC   W
Sbjct: 690 RFHHFREGSCSCGGYW 705



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 177/380 (46%), Gaps = 56/380 (14%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N L+  Y++ G L  AR LFDKM  RD++SW+ ++ A+           LF     
Sbjct: 144 VFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYI---------TLFYGFSQ 194

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R  VS+   IAG+       E  ++F RM ++   P D T +S + +C  +  ++ GK++
Sbjct: 195 RSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL 254

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  I+    G ++ +  AL DMY K GEI  AR +FD M N+++++W  MIS Y +    
Sbjct: 255 HAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCI 314

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------------------------ 274
                LF +M+  G+ P+E+T+ ++L  C   G +D                        
Sbjct: 315 DYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTAL 374

Query: 275 -----------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A RLF    ++D   W  M+ GY  +G  E AL LF EM +  V+P+ 
Sbjct: 375 IDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPND 434

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVV------LGVDDDLLVSSALIDMYCKCGVTDDA 377
            +    + +C+     + G VV GK +        G+   +     ++D+  + G+ D+A
Sbjct: 435 ITFIGALHACS-----HAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEA 489

Query: 378 WTVFNMMP-TRNVVSWNSMI 396
           + +   MP T N+  W +M+
Sbjct: 490 YKMIESMPVTPNIAIWGAML 509



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 141/278 (50%), Gaps = 6/278 (2%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRL 65
           +R  I   Y   Q +   ++T ++    R ND+E  +RL   M + N +  + T L   +
Sbjct: 182 IRAYITLFYGFSQRSIV-SWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLII 240

Query: 66  LHFYAKS---GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
              +  +   GK  +A  L +   +   ++  AL+  + + G ++  RA+FD M  +D +
Sbjct: 241 SCGFVGAVQLGKRLHAYILRNGFGMSLALA-TALVDMYGKCGEIRSARAIFDSMKNKDVM 299

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++   I+ +A       A Q+F +M+ +   P + T VS L+ CA    L  GK  H  I
Sbjct: 300 TWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYI 359

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  +V ++ AL DMYAK G+I  A+ LF    +R++ +WN+M++GY  +G  +K +
Sbjct: 360 DKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKAL 419

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
            LF EM+ LG+ P+++T    L AC   G + +   LF
Sbjct: 420 KLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLF 457



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 124/274 (45%), Gaps = 24/274 (8%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKL-----FYARD 80
           +T ++    + N ++ A +L   M  N   PN   + + LL   A +G L     F+A  
Sbjct: 301 WTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVS-LLSLCAVNGALDMGKWFHA-- 357

Query: 81  LFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
             DK  +  D+I   AL+  +A+ G +   + LF +   RD  ++N  +AG+   G+  +
Sbjct: 358 YIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEK 417

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALT 198
           AL++F+ M+    +P D T + AL+AC+    +  GK +  K++    L   V     + 
Sbjct: 418 ALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMV 477

Query: 199 DMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISG--YLKNGQPKKCIDLFQEMQLLGLNP 255
           D+  + G +D+A  + + M    N+  W  M++     KN      +      +LL L P
Sbjct: 478 DLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSN----MGELAARELLALEP 533

Query: 256 D----EVTVSNILGACFQTGRIDDAGRLFHVIKE 285
                +V +SNI  A     R +D   +   +K+
Sbjct: 534 QNCGYKVLMSNIYAA---ANRWNDVAGMRKAVKD 564


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 326/573 (56%), Gaps = 37/573 (6%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           + S L +C     +  GKQ+H +I    +  N  +   L ++Y     +  A  LFDR++
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
            RNL  WN+MI GY  NG  +  I L+ +M+  GL PD+ T   +L AC           
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G ++ A ++F  I E+D VCW +M+  Y+QNG+
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            +++L L   M    ++P + +    +++ A    L  G+ +HG +   G + +  V +A
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTA 243

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY K G  + A ++F ++  + VVSWN+MI GYA +G   EAL L+ K ++  + PD
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLF-KEMKGKVLPD 302

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TFV VL+AC H  L   G+ HF S+ +   I P++ HY CMI+LLG    +++A  LI
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             +  +P++ +W  LL  C + G+++ GE+A   L ELEP + G Y++LSNMYA  G+W+
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
            VA +R  M +K +KK  A SWIE+ NKVH F+SED +HP++E IY EL +  K ++EAG
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           ++P    V HD +++EKV  +  HSE+LA+A+ LI    G T + I+KN+R+C DCH+ +
Sbjct: 483 YAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAG-TKLLIIKNLRICEDCHVAI 541

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KF S I  R I +RD NR+HHF  G CSC D W
Sbjct: 542 KFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 187/386 (48%), Gaps = 49/386 (12%)

Query: 91  ISWNALLSA-----HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           IS+N LL+      +    S+ +   LFD++  R+   +N  I G+A  G    A+ ++ 
Sbjct: 32  ISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWNGPYELAISLYY 91

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M+     P  +T    L AC+ L  +  GK+IH  ++   L  +VFV  AL DMYAK G
Sbjct: 92  QMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCG 151

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV----- 260
            ++ AR +FD+++ R++V WN M++ Y +NGQP + + L + M   GL P E T      
Sbjct: 152 CVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIA 211

Query: 261 ------------------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                                         + ++    ++G ++ A  LF +++EK  V 
Sbjct: 212 ASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVS 271

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  MI GY  +G   +AL LF EM  + V PD  +   V+++C+    L  G+ +H +++
Sbjct: 272 WNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFVGVLAACSHGGLLNEGK-MHFRSM 329

Query: 351 V--LGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVVSWNSMINGYAQNGQ-DL 406
           +    +   +   + +ID+   CG  ++A+  +  M    +   W ++++    +G  ++
Sbjct: 330 ISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEM 389

Query: 407 EALALYDKLLQENLKPDSFTFVSVLS 432
             LAL +KL++  L+PD      +LS
Sbjct: 390 GELAL-EKLVE--LEPDDGGNYVILS 412



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 156/308 (50%), Gaps = 14/308 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  +A+ G V+  R +FDK+  RD V +N+ +A ++  G   E+L +   M 
Sbjct: 136 DVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMA 195

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +  +PT+ T V ++ A A    L +GK++HG         N  V+ AL DMYAK G ++
Sbjct: 196 FNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVN 255

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR LF+ +  + +VSWN MI+GY  +G   + +DLF+EM+   L PD +T   +L AC 
Sbjct: 256 VARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACS 314

Query: 269 QTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +++    F  +    N+      +T MI      G+ E+A  L  EM    V PD 
Sbjct: 315 HGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEM---RVEPDA 371

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTDDAWTVF 381
               +++ SC    ++  G++   K V L  DD  + ++   L +MY + G  D    + 
Sbjct: 372 GVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVI---LSNMYAQAGKWDGVARLR 428

Query: 382 NMMPTRNV 389
           ++M  + +
Sbjct: 429 DLMMNKGL 436



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 85/196 (43%), Gaps = 41/196 (20%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP---IRDS 121
           L+  YAKSG +  AR LF+ +  + ++SWNA+++ +A  G   +   LF +M    + D 
Sbjct: 244 LMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDH 303

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPT--DYT-HVSALNACAQLLD------ 171
           +++   +A  ++ G   E    F  M  D    PT   YT  +  L  C +L +      
Sbjct: 304 ITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIM 363

Query: 172 -------------LRRGKQIHGKIVVGNL------------GGNVFVRNALTDMYAKGGE 206
                        L    +IHG + +G L            GGN  +   L++MYA+ G+
Sbjct: 364 EMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVI---LSNMYAQAGK 420

Query: 207 IDKARWLFDRMNNRNL 222
            D    L D M N+ L
Sbjct: 421 WDGVARLRDLMMNKGL 436


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/645 (33%), Positives = 369/645 (57%), Gaps = 47/645 (7%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-----SHMDLNFYEPNTTFLHNRLLHF 68
           ++S G          L   C  ++  ++ K++      S +D++       F+   + H 
Sbjct: 107 MFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMD------AFVQGSMFHM 160

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSY 124
           Y + G++  AR +FD+M  +D+++ +ALL A+AR G ++++  +  +M       + VS+
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  ++GF   G+ +EA+ +F ++    F P   T  S L +      L  G+ IHG ++ 
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V +A+ DMY K G +     LF++         N  I+G  +NG   K +++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F+  +       E T+                        E + V WT++I G  QNGK+
Sbjct: 341 FELFK-------EQTM------------------------ELNVVSWTSIIAGCAQNGKD 369

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
            +AL LF EM    V+P+  +I S++ +C  +A+L HG+  HG AV + + D++ V SAL
Sbjct: 370 IEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSAL 429

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KCG  + +  VFNMMPT+N+V WNS++NG++ +G+  E +++++ L++  LKPD 
Sbjct: 430 IDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDF 489

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            +F S+LSAC    L + G  +F  +S  +GI P L+HY+CM+NLLGR+  + +A DLIK
Sbjct: 490 ISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIK 549

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+S +W  LL+ C ++ ++   E+AA  LF LEP N G Y++LSN+YAA G W +
Sbjct: 550 EMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTE 609

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           V SIR+ M+S  +KK    SWI++ N+V+  ++ D++HP+ + I E++ ++ K+++++G 
Sbjct: 610 VDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGH 669

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
            PN    LHD +E+E+ + +  HSEKLA+ + L+  P G TP+++
Sbjct: 670 RPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDG-TPLQV 713


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/579 (37%), Positives = 323/579 (55%), Gaps = 37/579 (6%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T  S L+A A  + +  G+Q+H  I       N+FV  AL DMYAK  ++  A  +
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE-MQLLGLNPDEVTVSNILGACFQTGR 272
           FD+M  RNLVSWN MI G+  N    + + +F++ ++   + P+EV+VS++L AC   G 
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 273 I-----------------------------------DDAGRLFHVIKEKDNVCWTTMIVG 297
           +                                   D+  +LF  + ++D V W  +++G
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           + QN K E+A   F  M  E + PD+ S S+V+ S A LA+L+ G  +H + + LG   +
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + +  +LI MY KCG   DA+ VF  +   NV+SW +MI+ Y  +G   + + L++ +L 
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           E ++P   TFV VLSAC H    E G  HF+S+  +H + P  +HYACM++LLGR+  +D
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A   I+S+P KP   +W  LL  C   G++K G  AA  LFE+EP N G Y++L+NM  
Sbjct: 368 EAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCT 427

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
             GR E+   +R  M    V+K    SWI++ N    F + DR+H  ++ IY+ L KL K
Sbjct: 428 RSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEK 487

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            +++ G+   T+ V +  +E E+ + + YHSEKLALA+ L+  P   +PIRI KN+R CG
Sbjct: 488 LVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPID-SPIRIKKNLRTCG 546

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH  MK AS I  R II+RD NRFH F  G CSC D W
Sbjct: 547 HCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 187/408 (45%), Gaps = 44/408 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +I    AL+  +A+   +     +FD+MP R+ VS+N+ I GF +      A+ VF  + 
Sbjct: 44  NIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVL 103

Query: 149 KDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +++   P + +  S L+ACA +  L  G+Q+HG +V   L    +V N+L DMY K    
Sbjct: 104 REKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFF 163

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA- 266
           D+   LF  + +R++V+WN+++ G+++N + ++  + F  M+  G+ PDE + S +L + 
Sbjct: 164 DEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSS 223

Query: 267 -------------------------CF---------QTGRIDDAGRLFHVIKEKDNVCWT 292
                                    C          + G + DA ++F  I++ + + WT
Sbjct: 224 ASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWT 283

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-- 350
            MI  Y  +G     + LF  MLSE + P   +   V+S+C+    +  G + H  ++  
Sbjct: 284 AMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG-LAHFNSMKK 342

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEAL 409
           +  ++      + ++D+  + G  D+A      MP +   S W +++    + G      
Sbjct: 343 IHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGR 402

Query: 410 ALYDKLLQ-ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
              ++L + E   P ++  ++  + C  +   E   N    +  V+G+
Sbjct: 403 EAAERLFEMEPYNPGNYVLLA--NMCTRSGRLEEA-NEVRRLMGVNGV 447



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 110/222 (49%), Gaps = 8/222 (3%)

Query: 70  AKSGKLFYARDL------FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           A  G L + R +      F  +PL  ++  N+L+  + +     +   LF  +  RD V+
Sbjct: 123 ANMGGLNFGRQVHGVVVKFGLVPLTYVM--NSLMDMYFKCRFFDEGVKLFQCVGDRDVVT 180

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  + GF       EA   F  M+++   P + +  + L++ A L  L +G  IH +I+
Sbjct: 181 WNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQII 240

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 N+ +  +L  MYAK G +  A  +F+ + + N++SW  MIS Y  +G   + I+
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           LF+ M   G+ P  VT   +L AC  TGR+++    F+ +K+
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 342



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 50/225 (22%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YAK G L  A  +F+ +   ++ISW A++SA+   G                    
Sbjct: 254 LITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGC------------------- 294

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG-------KQ 177
                       + + +++F  M  +  EP+  T V  L+AC+    +  G       K+
Sbjct: 295 ------------ANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 342

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNG 236
           IH      N G   +    + D+  + G +D+A+   + M  +   S W  ++    K G
Sbjct: 343 IHDM----NPGPEHYA--CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYG 396

Query: 237 QPKKCIDLFQEM-QLLGLNP-DEVTVSNILGACFQTGRIDDAGRL 279
             K   +  + + ++   NP + V ++N+   C ++GR+++A  +
Sbjct: 397 NLKMGREAAERLFEMEPYNPGNYVLLANM---CTRSGRLEEANEV 438


>gi|357481223|ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512232|gb|AES93855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 774

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 383/732 (52%), Gaps = 78/732 (10%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL------FDKMP- 86
           T+++ + L   L+  + L +  P+ T L +    F+A + K +  + +       +K P 
Sbjct: 52  TQIHTLSLQGNLEKALSLVYTNPSLT-LQDYAFLFHACAQKKYIKQGMALHHYILNKHPK 110

Query: 87  -LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
              DI   N LL+ + + G +   R LFD+MP R+ VS+   ++G+A  G  RE   +FS
Sbjct: 111 IQNDIFLTNNLLNMYCKCGHLDYARYLFDQMPRRNFVSWTVLVSGYAQFGLIRECFALFS 170

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-- 203
            M    F P ++   S L AC +  D++ G Q+H   +  +L  +V+V NAL  MY+K  
Sbjct: 171 GMLA-CFRPNEFAFASVLCACEEQ-DVKYGLQVHAAALKMSLDFSVYVANALITMYSKCS 228

Query: 204 ---GGEIDKAR---WL-FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
              GG  D+     W+ F  M  RNL+SWN MISG+   G   K I LF  M   G+  +
Sbjct: 229 GGFGGSCDQTTDDAWMVFKSMEYRNLISWNSMISGFQFRGLGDKAIGLFAHMYCNGIRFN 288

Query: 257 EVTVSNILGA-------------------CFQT--------------------------- 270
             T+  +L +                   CFQ                            
Sbjct: 289 STTLLGVLSSLNHCMSTSDDINNTHHLKNCFQLHCLTVKSGLISEVEVVTALVKSYADLG 348

Query: 271 GRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
           G I D  +LF     E D V WT +I  + +   E+ A +LF ++  E+   D+ + S  
Sbjct: 349 GHISDCFKLFLDTSGEHDIVSWTAIISVFAERDPEQ-AFLLFCQLHRENFVLDRHTFSIA 407

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +CA   +  +   VH + +  G  +D +VS+ALI  Y + G    +  VF  M   ++
Sbjct: 408 LKACAYFVTEKNATEVHSQVMKQGFHNDTVVSNALIHAYGRSGSLALSEQVFTEMGCHDL 467

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSWNSM+  YA +G+  +AL L+    Q ++ PDS TFV++L+AC HA L E G   F+S
Sbjct: 468 VSWNSMLKSYAIHGRAKDALDLFK---QMDVHPDSATFVALLAACSHAGLVEEGTQIFNS 524

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           ++  HGI P LDHY+CM++L GR+  + +A +LI+ +P KP+S+IWS+LL  C   G+  
Sbjct: 525 MTESHGIAPHLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGEAD 584

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
             ++AA     L+P N+  YI +SN+Y++ G + +   IR  M+   V+K    SW+E+ 
Sbjct: 585 LAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSFIEAGLIRKEMRDSKVRKRPGLSWVEVG 644

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
            +VH+F S  + HP+ + I   L  LI +L+E G++P     LHD + E     + +HSE
Sbjct: 645 KQVHEFTSGGQHHPKRQAILSRLETLIGQLKEMGYAPEIGSALHDIEVEHIEDQLFHHSE 704

Query: 630 KLALAYCLIKKPHGVTP-----IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
           K+AL + ++ +  G++P     I+IMKNIR+C DCH FMK AS +  + I++RDSNRFHH
Sbjct: 705 KMALVFAIMNE--GISPCAGNVIKIMKNIRICVDCHNFMKLASKLFQKEIVVRDSNRFHH 762

Query: 685 FVGGNCSCKDNW 696
           F    CSC D W
Sbjct: 763 FKYATCSCNDYW 774


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 331/577 (57%), Gaps = 9/577 (1%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  I G A       ++  F  M +    P   T    L + A L+D+  G+ +HG ++
Sbjct: 106 FNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVM 165

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN----LVSWNLMISGYLKNGQPK 239
              L  + FVR +L DMY K GE+     LFD    RN    ++ WN++I+G  K G   
Sbjct: 166 KLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLS 225

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
           K   LF+ M       +  + ++++    + G +D A  LF  + EK+ V WTTMI G++
Sbjct: 226 KAASLFEAMP----ERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFS 281

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNG  E AL +F  ML E VRP+  ++ S + +C K+ +L  G+ +H      G   +  
Sbjct: 282 QNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRG 341

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL+DMY KCG    A  VF     +++++W+ MI G+A +G   +AL  + K+    
Sbjct: 342 IGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAG 401

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           + PD   F+++L+AC H+   ++G N F+S+   + I P++ HY  +++LLGR+  +D+A
Sbjct: 402 INPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEA 461

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           +  I+S+P  P+ +IW  L   C    +I+  E+ A  L +LEP + G Y+ LSN+YAA 
Sbjct: 462 LSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAV 521

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GRWEDV  +R+ MK++ V+K   +S+IE++ +VH FV+ D  H   E I  +L ++    
Sbjct: 522 GRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASA 581

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           ++ G+ P T  VLH+ +EEEK  ++  HSEKLALA+ LI    G T IRI+KN+RVCGDC
Sbjct: 582 KQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGST-IRIVKNLRVCGDC 640

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  MK+AS +  R IILRD  RFHHF  G CSC D W
Sbjct: 641 HSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 167/338 (49%), Gaps = 11/338 (3%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           +  L N L++   K G L  A  LF+ MP R+  SWN+L++   R+G +   R LF +MP
Sbjct: 207 SILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMP 266

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            ++ VS+ T I GF+  G   +AL +F RM ++   P D T VSAL AC ++  L+ G++
Sbjct: 267 EKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGER 326

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IH  +       N  +  AL DMYAK G I  A  +F     ++L++W++MI G+  +G 
Sbjct: 327 IHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGC 386

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWT 292
             + +  F +M+  G+NPDEV    IL AC  +G +D     F  ++     E     +T
Sbjct: 387 FDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYT 446

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            ++    + G+ ++AL     M    + PD     ++  +C    ++   ++   K  +L
Sbjct: 447 LIVDLLGRAGRLDEALSFIQSM---PINPDFVIWGALFCACRAHKNIEMAELTAEK--LL 501

Query: 353 GVDDDLLVSSALI-DMYCKCGVTDDAWTVFNMMPTRNV 389
            ++     S   + ++Y   G  +D   V  +M  R V
Sbjct: 502 QLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGV 539



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 147/318 (46%), Gaps = 23/318 (7%)

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
            V+ ++ +      +D A  +F      +   +  +I G  +N + E ++  F  ML   
Sbjct: 74  VVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLS 133

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           +RPD+ ++  V+ S A L  +  G+ +HG  + LG++ D  V  +L+DMY K G      
Sbjct: 134 IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGL 193

Query: 379 TVFNMMPTRN----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            +F+  P RN    ++ WN +ING  + G   +A +L++ + + N    + ++ S+++  
Sbjct: 194 QLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERN----AGSWNSLINGF 249

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPN 491
           +     +R +  F  +   + ++     +  MIN   ++ D +KA+ +   +     +PN
Sbjct: 250 VRNGDLDRARELFVQMPEKNVVS-----WTTMINGFSQNGDHEKALSMFWRMLEEGVRPN 304

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHL----FELEPINAGPYIMLSNMYAACGRWEDVAS 547
            L   + L  C   G ++ GE    +L    F+L   N G    L +MYA CG  +  + 
Sbjct: 305 DLTVVSALLACTKIGALQVGERIHNYLSSNGFQL---NRGIGTALVDMYAKCGNIKSASR 361

Query: 548 IRSSMKSKNVKKFAAYSW 565
           +    K K++  ++   W
Sbjct: 362 VFVETKGKDLLTWSVMIW 379



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 113/278 (40%), Gaps = 47/278 (16%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +  +  +  +  V + LI   C     D A ++F      N+  +N++I G A+N +
Sbjct: 59  IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSR 118

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSA-----------CLHADLFERGQNHFDSISAV 453
              +++ +  +L+ +++PD  T   VL +           CLH  + + G   FDS   V
Sbjct: 119 FEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLE-FDSFVRV 177

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS---LIWSTLLSVCAMKGDIKH 510
                       ++++  +  ++   + L    P +  +   L+W+ L++ C   GD+  
Sbjct: 178 -----------SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLS- 225

Query: 511 GEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
               A  LFE  P  NAG +  L N +   G  +    +   M  KNV      SW  + 
Sbjct: 226 ---KAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV-----VSWTTMI 277

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           N      S++  H       E+   +  ++ E G  PN
Sbjct: 278 NG----FSQNGDH-------EKALSMFWRMLEEGVRPN 304


>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 251/758 (33%), Positives = 380/758 (50%), Gaps = 106/758 (13%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFY----EP 56
           +  +  + +A+  LY+    + +  Y  L   C +       K LQ  M L+ Y    +P
Sbjct: 69  LSTQGNIEEALSLLYTHSSLSLQ-TYASLFHACAQ------KKCLQHGMTLHHYVLHKDP 121

Query: 57  ---NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
              N  FL N +++ Y K G L YAR                                +F
Sbjct: 122 TIQNDVFLTNHIINMYCKCGHLAYAR-------------------------------YVF 150

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D+M  R+ VS+   I+G A  G  RE   +FS +    F P ++   S L+AC +  D++
Sbjct: 151 DQMSHRNIVSWTALISGHAQSGLVRECFSLFSGLLA-HFRPNEFAFASLLSACEEH-DIK 208

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAK----GGEI----DKARWLFDRMNNRNLVSW 225
            G Q+H   +  +L  NV+V N+L  MY+K    GG      D A  +F  M  RNLVSW
Sbjct: 209 CGMQVHAVALKISLDANVYVANSLITMYSKRSGFGGGYAQTPDDAWTMFKSMEFRNLVSW 268

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA----------------CFQ 269
           N MI+ +   G   K I LF  M   G+  D  T+ ++  +                CFQ
Sbjct: 269 NSMIAXFQLRGLGDKAICLFAHMYCNGIGFDRATLLSVFSSLNECGAFDVINTYLRKCFQ 328

Query: 270 T---------------------------GRIDDAGRLFH-VIKEKDNVCWTTMIVGYTQN 301
                                       G I D  R+FH    + D V WT +I  + + 
Sbjct: 329 LHCLTIKSGLISEIEVVTALIKSYANLGGHISDCYRIFHDTSSQLDIVSWTALISVFAER 388

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
             E+ A +LF ++  +   PD ++ S  + +CA   +  H   +H + +  G  +D ++ 
Sbjct: 389 DPEQ-AFLLFCQLHRQSYLPDWYTFSIALKACAYFVTEQHAMAIHSQVIKKGFQEDTVLC 447

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+  Y +CG    +  VFN M   ++VSWNSM+  YA +GQ  +AL L+ ++   N+ 
Sbjct: 448 NALMHAYARCGSLALSEQVFNEMGCHDLVSWNSMLKSYAIHGQAKDALELFQQM---NVC 504

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           PDS TFV++LSAC H  L + G   F+S+S  HG+ P LDHY+CM++L GR+  + +A +
Sbjct: 505 PDSATFVALLSACSHVGLVDEGVKLFNSMSDDHGVVPQLDHYSCMVDLYGRAGKIFEAEE 564

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           LI+ +P KP+S+IWS+LL  C   G+ +  ++AA    ELEP N+  Y+ +SN+Y++ G 
Sbjct: 565 LIRKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKELEPNNSLGYVQMSNIYSSGGS 624

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           +     IR+ M    V+K    SW+EI  +VH+F S  + HP    I   L  +I +L+E
Sbjct: 625 FTKAGLIRNEMSDFKVRKEPGLSWVEIGKQVHEFGSGGQYHPNRGAILSRLEIVIGQLKE 684

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK---PHGVTPIRIMKNIRVCGD 658
            G+ P   L L+DT+ E K   + +HSEK+AL + ++ +   P G   I+IMKNIR+C D
Sbjct: 685 MGYVPELSLALYDTEVEHKEDQLFHHSEKMALVFAIMNEGSLPCGGNVIKIMKNIRICVD 744

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH FMK AS +  + I++RDSNRFH F    CSC D W
Sbjct: 745 CHNFMKLASYLFQKEIVVRDSNRFHRFKYATCSCNDYW 782


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 336/591 (56%), Gaps = 41/591 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FD++   +   +NT +  +     + +AL ++  M K+   P +YT+   + ACA  L 
Sbjct: 85  IFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLL 144

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
              GK+IH  ++      +V+V+N L +MYA  G +  AR LFD     + VSWN +++G
Sbjct: 145 EFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAG 204

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y+K G                                  G++ +A +LF+ + EKD V W
Sbjct: 205 YVKKG--------------------------------DMGQVMEAWKLFNEMDEKDMVSW 232

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           + +I GY QNG  E+AL++F EM +  +R D+  + SV+S+CA L+ +  G+++HG  + 
Sbjct: 233 SALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIR 292

Query: 352 LGVDDDLLVSSALI----DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           +G++  + + +ALI    DMY KCG  ++A  VFN M  + V SWN++I G A NG    
Sbjct: 293 MGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVER 352

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           +L ++ ++    + P+  TF+ VL AC H  L + G+ HF S+   HGI P++ HY CM+
Sbjct: 353 SLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMV 412

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  +++A  LI+S+P  P+   W  LL  C   GD + GE   R L EL+P + G
Sbjct: 413 DLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDG 472

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            +++LSN++A+ G WEDV  +R  MK + V K    S IE +  VH+F++ D+THP    
Sbjct: 473 FHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINK 532

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL--IKKPHGVT 645
           +   L+++ K+L+  G++P+T  V  D  EEEK  ++  HSEKLA+A+ L  I  P   T
Sbjct: 533 VEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPP---T 589

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           PIRIMKN+R+C DCH   K  S    R I++RD +RFH+F  G CSC D W
Sbjct: 590 PIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 16/344 (4%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG---SVQDLRALFDK 115
            ++ N L++ YA  G +  AR LFD+ P+ D +SWN++L+ + + G    V +   LF++
Sbjct: 164 VYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNE 223

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           M  +D VS++  I+G+   G   EAL +F  M  +     +   VS L+ACA L  ++ G
Sbjct: 224 MDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTG 283

Query: 176 KQIHGKIVVGNLGGNVFVRNAL----TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           K IHG ++   +   V ++NAL    +DMY K G ++ A  +F+ M  + + SWN +I G
Sbjct: 284 KMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIG 343

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-- 289
              NG  ++ +D+F EM+  G+ P+E+T   +LGAC   G +D+    F  + EK  +  
Sbjct: 344 LAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEP 403

Query: 290 ---CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
               +  M+    + G   +A  L   M    + PD  +  +++ +C K      G+ V 
Sbjct: 404 NVKHYGCMVDLLGRAGLLNEAEKLIESM---PMAPDVATWGALLGACKKHGDTEMGERVG 460

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
            K + L  D D      L +++   G  +D   V  MM  + VV
Sbjct: 461 RKLIELQPDHDGF-HVLLSNIFASKGDWEDVLEVRGMMKQQGVV 503



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 139/314 (44%), Gaps = 58/314 (18%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGR----IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
           +  +M L G   D    S +L   F T      +D + ++F  I+  +   W TM+  Y 
Sbjct: 48  ILSQMILTGFISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYI 105

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q+   E AL+L+  M+  +V PD ++   VV +CA     + G+ +H   + +G D D+ 
Sbjct: 106 QSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVY 165

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM------------------------ 395
           V + LI+MY  CG   DA  +F+  P  + VSWNS+                        
Sbjct: 166 VQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMD 225

Query: 396 ----------INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
                     I+GY QNG   EAL ++ ++    ++ D    VSVLSAC H  + + G+ 
Sbjct: 226 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGK- 284

Query: 446 HFDSISAVHG--ITPSLDHYACMIN-LLGRSSD-------VDKAVDLIKSLPHKPNSLIW 495
                  +HG  I   ++ Y  + N L+   SD       V+ A+++   +  K  S  W
Sbjct: 285 ------MIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVS-SW 337

Query: 496 STLLSVCAMKGDIK 509
           + L+   A+ G ++
Sbjct: 338 NALIIGLAVNGLVE 351



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 2/184 (1%)

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           D +  +F+ +   N   WN+M+  Y Q+    +AL LY  +++ N+ PD++T+  V+ AC
Sbjct: 80  DYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQAC 139

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
               L   G+   D +  V G    +     +IN+     ++  A  L    P   +S+ 
Sbjct: 140 AVRLLEFGGKEIHDHVLKV-GFDSDVYVQNTLINMYAVCGNMRDARKLFDESP-VLDSVS 197

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           W+++L+    KGD+     A +   E++  +   +  L + Y   G +E+   +   M +
Sbjct: 198 WNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA 257

Query: 555 KNVK 558
             ++
Sbjct: 258 NGMR 261


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 344/638 (53%), Gaps = 76/638 (11%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N    G   + F R +  ++S       EP+ ++H+  L +C     L  GKQ+H  I+ 
Sbjct: 30  NLCSKGHLKQAFDRFSSHIWS-------EPSLFSHL--LQSCISENSLSLGKQLHSLIIT 80

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKA-------------------------------RWL 213
                + F+ N L ++Y+K G++D A                               R +
Sbjct: 81  SGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKM 140

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD M  RN+ +WN M++G ++    ++ + LF  M  LG  PDE  + ++L  C      
Sbjct: 141 FDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRAL 200

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + +  RL   +  ++ V W T+I G 
Sbjct: 201 VAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGR 260

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QNG  E+ L  +N M     RPDK +  SV+SSC++LA+L  GQ +H + +  G    +
Sbjct: 261 AQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIV 320

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+LI MY +CG  + +  VF      +VV W+SMI  Y  +G+ +EA+ L++++ QE
Sbjct: 321 SVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQE 380

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L+ +  TF+S+L AC H  L E+G   FD +   +G+ P L+HY CM++LLGR   V++
Sbjct: 381 KLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEE 440

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A  LI+S+P K + + W TLLS C +    +     +  +F L+P +  PY++LSN++A+
Sbjct: 441 AEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHAS 500

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RW+DV+ +R +M+ + +KK    SW+E+ N++H+F   D++HP++  I   L +L  +
Sbjct: 501 DKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSE 560

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+ P+   VLHD   E+K  S+ +HSEKLA+A+ L+  P G TPIR++KN+RVC D
Sbjct: 561 MKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVG-TPIRVIKNLRVCSD 619

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH+ +K+ S+I  R II+RDS+RFHHF  G CSC D W
Sbjct: 620 CHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 116/433 (26%), Positives = 213/433 (49%), Gaps = 39/433 (9%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +K  L+QA D  +S    +    ++ L+  C   N + L K+L S + +     +  F+ 
Sbjct: 33  SKGHLKQAFDR-FSSHIWSEPSLFSHLLQSCISENSLSLGKQLHS-LIITSGCSSDKFIS 90

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL+ Y+K G+L  A  LF  MP ++I+S N L++ + RSG     R +FD+MP R+  
Sbjct: 91  NHLLNLYSKCGQLDTAITLFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVA 150

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++N  +AG     F+ E L +FSRM +  F P ++   S L  CA L  L  G+Q+HG +
Sbjct: 151 TWNAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYV 210

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                  N+ V ++L  MY K G + +   L   M ++N+V+WN +I+G  +NG P++ +
Sbjct: 211 RKCGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVL 270

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQ--------------------------------- 269
           D +  M++ G  PD++T  +++ +C +                                 
Sbjct: 271 DQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMY 330

Query: 270 --TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
              G ++ + ++F   +  D VCW++MI  Y  +G+  +A+ LFN+M  E +  +  +  
Sbjct: 331 SRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFL 390

Query: 328 SVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           S++ +C+       G       V   GV   L   + ++D+  + G  ++A  +   MP 
Sbjct: 391 SLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPV 450

Query: 387 R-NVVSWNSMING 398
           + +V++W ++++ 
Sbjct: 451 KADVITWKTLLSA 463


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 363/680 (53%), Gaps = 56/680 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF-DKMPIR-D 120
            R  H +A    L +    F         ++NALLS +AR G V D + LF    P R D
Sbjct: 185 GREAHAFALKNGLLHGHQRF---------AFNALLSMYARLGLVADAQRLFAGATPGRGD 235

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++NT ++     G   EA+Q    M      P   T  SAL AC++L  L  G+++H 
Sbjct: 236 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 295

Query: 181 KIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQ 237
            ++  + L  N FV +AL DMYA   ++ KAR +FD +  + + L  WN MI GY + G 
Sbjct: 296 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT-------------------------- 270
            ++ + LF  M+   G  P E T++++L AC ++                          
Sbjct: 356 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 415

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM--LSED- 318
                    G+ D A R+F ++   D V W T+I G    G   DA  L  EM  L E  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           V P+  ++ +++  CA LA+   G+ +HG AV   +D D+ V SAL+DMY KCG    + 
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 535

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHA 437
            VF+ +P RN ++WN +I  Y  +G   EA  L+D++      +P+  TF++ L+AC H+
Sbjct: 536 AVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHS 595

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWS 496
            + +RG   F ++   HG+ P+ D  AC++++LGR+  +D+A  ++ S+      +  WS
Sbjct: 596 GMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWS 655

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           T+L  C +  ++  GE+A   L ELEP  A  Y++L N+Y+A G+W   A +RS M+ + 
Sbjct: 656 TMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRG 715

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V K    SWIE+D  +H+F++ +  HP +E ++  +  L  ++   G++P+T  VLHD  
Sbjct: 716 VAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMD 775

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           + +K   +  HSEKLA+A+ L++   G T IR+ KN+RVC DCH   KF S ++GR I+L
Sbjct: 776 DGDKAAVLRCHSEKLAIAFGLLRAAPGAT-IRVAKNLRVCNDCHEAAKFLSKMVGREIVL 834

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC D W
Sbjct: 835 RDVRRFHHFRNGQCSCGDYW 854



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 209/476 (43%), Gaps = 76/476 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSR----- 146
           NALL+A+AR G +     +F  +     D+VS+N+ I+          AL +F R     
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHAL 147

Query: 147 -----MQKDRFEPTDYTHVSALNACAQL----LDLRRGKQIHGKIVVGNL--GGNVFVRN 195
                M       T +T VS L A + L      +R G++ H   +   L  G   F  N
Sbjct: 148 AALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFN 207

Query: 196 ALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
           AL  MYA+ G +  A+ LF        ++V+WN M+S  +++G   + +    +M  LG+
Sbjct: 208 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 267

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC----------------------- 290
            PD VT ++ L AC +   + D GR  H    KD+                         
Sbjct: 268 RPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 326

Query: 291 ----------------WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSC 333
                           W  MI GY Q G +E+AL LF  M +E    P + +++SV+ +C
Sbjct: 327 RQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPAC 386

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A+  +    + VHG  V  G+  +  V +AL+DMY + G TD A  +F M+   +VVSWN
Sbjct: 387 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 446

Query: 394 SMINGYAQNGQDLEALAL---YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           ++I G    G   +A  L     +L +  + P++ T +++L  C       RG+      
Sbjct: 447 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE-IHGY 505

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  H +   +   + ++++  +   +  +  +   LP + N++ W+ L+    M G
Sbjct: 506 AVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMHG 560



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YA+ GK   AR +F  + L D++SWN L++     G V D   L  +M   
Sbjct: 412 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM--- 468

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                     ++++    P   T ++ L  CA L    RGK+IH
Sbjct: 469 -------------------------QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIH 503

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  V   L  +V V +AL DMYAK G +  +R +FDR+  RN ++WN++I  Y  +G   
Sbjct: 504 GYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGG 563

Query: 240 KCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +   LF  M   G   P+EVT    L AC  +G +D   +LFH ++    V
Sbjct: 564 EATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 363/680 (53%), Gaps = 56/680 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF-DKMPIR-D 120
            R  H +A    L +    F         ++NALLS +AR G V D + LF    P R D
Sbjct: 185 GREAHAFALKNGLLHGHQRF---------AFNALLSMYARLGLVADAQRLFAGATPGRGD 235

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++NT ++     G   EA+Q    M      P   T  SAL AC++L  L  G+++H 
Sbjct: 236 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 295

Query: 181 KIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQ 237
            ++  + L  N FV +AL DMYA   ++ KAR +FD +  + + L  WN MI GY + G 
Sbjct: 296 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 355

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT-------------------------- 270
            ++ + LF  M+   G  P E T++++L AC ++                          
Sbjct: 356 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 415

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM--LSED- 318
                    G+ D A R+F ++   D V W T+I G    G   DA  L  EM  L E  
Sbjct: 416 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 475

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           V P+  ++ +++  CA LA+   G+ +HG AV   +D D+ V SAL+DMY KCG    + 
Sbjct: 476 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 535

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHA 437
            VF+ +P RN ++WN +I  Y  +G   EA  L+D++      +P+  TF++ L+AC H+
Sbjct: 536 AVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHS 595

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWS 496
            + +RG   F ++   HG+ P+ D  AC++++LGR+  +D+A  ++ S+      +  WS
Sbjct: 596 GMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWS 655

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           T+L  C +  ++  GE+A   L ELEP  A  Y++L N+Y+A G+W   A +RS M+ + 
Sbjct: 656 TMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRG 715

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V K    SWIE+D  +H+F++ +  HP +E ++  +  L  ++   G++P+T  VLHD  
Sbjct: 716 VAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMD 775

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           + +K   +  HSEKLA+A+ L++   G T IR+ KN+RVC DCH   KF S ++GR I+L
Sbjct: 776 DGDKAAVLRCHSEKLAIAFGLLRAAPGAT-IRVAKNLRVCNDCHEAAKFLSKMVGREIVL 834

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC D W
Sbjct: 835 RDVRRFHHFRNGQCSCGDYW 854



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 209/476 (43%), Gaps = 76/476 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSR----- 146
           NALL+A+AR G +     +F  +     D+VS+N+ I+          AL +F R     
Sbjct: 98  NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHAL 147

Query: 147 -----MQKDRFEPTDYTHVSALNACAQL----LDLRRGKQIHGKIVVGNL--GGNVFVRN 195
                M       T +T VS L A + L      +R G++ H   +   L  G   F  N
Sbjct: 148 AALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFN 207

Query: 196 ALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
           AL  MYA+ G +  A+ LF        ++V+WN M+S  +++G   + +    +M  LG+
Sbjct: 208 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 267

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC----------------------- 290
            PD VT ++ L AC +   + D GR  H    KD+                         
Sbjct: 268 RPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 326

Query: 291 ----------------WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSC 333
                           W  MI GY Q G +E+AL LF  M +E    P + +++SV+ +C
Sbjct: 327 RQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPAC 386

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A+  +    + VHG  V  G+  +  V +AL+DMY + G TD A  +F M+   +VVSWN
Sbjct: 387 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 446

Query: 394 SMINGYAQNGQDLEALAL---YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           ++I G    G   +A  L     +L +  + P++ T +++L  C       RG+      
Sbjct: 447 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE-IHGY 505

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  H +   +   + ++++  +   +  +  +   LP + N++ W+ L+    M G
Sbjct: 506 AVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMHG 560



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YA+ GK   AR +F  + L D++SWN L++     G V D   L  +M   
Sbjct: 412 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM--- 468

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                     ++++    P   T ++ L  CA L    RGK+IH
Sbjct: 469 -------------------------QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIH 503

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  V   L  +V V +AL DMYAK G +  +R +FDR+  RN ++WN++I  Y  +G   
Sbjct: 504 GYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGG 563

Query: 240 KCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +   LF  M   G   P+EVT    L AC  +G +D   +LFH ++    V
Sbjct: 564 EATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 614


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 363/680 (53%), Gaps = 56/680 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF-DKMPIR-D 120
            R  H +A    L +    F         ++NALLS +AR G V D + LF    P R D
Sbjct: 33  GREAHAFALKNGLLHGHQRF---------AFNALLSMYARLGLVADAQRLFAGATPGRGD 83

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++NT ++     G   EA+Q    M      P   T  SAL AC++L  L  G+++H 
Sbjct: 84  VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 143

Query: 181 KIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQ 237
            ++  + L  N FV +AL DMYA   ++ KAR +FD +  + + L  WN MI GY + G 
Sbjct: 144 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 203

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT-------------------------- 270
            ++ + LF  M+   G  P E T++++L AC ++                          
Sbjct: 204 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 263

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM--LSED- 318
                    G+ D A R+F ++   D V W T+I G    G   DA  L  EM  L E  
Sbjct: 264 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 323

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           V P+  ++ +++  CA LA+   G+ +HG AV   +D D+ V SAL+DMY KCG    + 
Sbjct: 324 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 383

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHA 437
            VF+ +P RN ++WN +I  Y  +G   EA  L+D++      +P+  TF++ L+AC H+
Sbjct: 384 AVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHS 443

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWS 496
            + +RG   F ++   HG+ P+ D  AC++++LGR+  +D+A  ++ S+      +  WS
Sbjct: 444 GMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWS 503

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           T+L  C +  ++  GE+A   L ELEP  A  Y++L N+Y+A G+W   A +RS M+ + 
Sbjct: 504 TMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRG 563

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V K    SWIE+D  +H+F++ +  HP +E ++  +  L  ++   G++P+T  VLHD  
Sbjct: 564 VAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMD 623

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           + +K   +  HSEKLA+A+ L++   G T IR+ KN+RVC DCH   KF S ++GR I+L
Sbjct: 624 DGDKAAVLRCHSEKLAIAFGLLRAAPGAT-IRVAKNLRVCNDCHEAAKFLSKMVGREIVL 682

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC D W
Sbjct: 683 RDVRRFHHFRNGQCSCGDYW 702



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 180/403 (44%), Gaps = 54/403 (13%)

Query: 155 TDYTHVSALNACAQL----LDLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEID 208
           T +T VS L A + L      +R G++ H   +   L  G   F  NAL  MYA+ G + 
Sbjct: 9   TSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVA 68

Query: 209 KARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            A+ LF        ++V+WN M+S  +++G   + +    +M  LG+ PD VT ++ L A
Sbjct: 69  DAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPA 128

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC------------------------------------ 290
           C +   + D GR  H    KD+                                      
Sbjct: 129 CSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQ 187

Query: 291 ---WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVH 346
              W  MI GY Q G +E+AL LF  M +E    P + +++SV+ +CA+  +    + VH
Sbjct: 188 LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVH 247

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
           G  V  G+  +  V +AL+DMY + G TD A  +F M+   +VVSWN++I G    G   
Sbjct: 248 GYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVA 307

Query: 407 EALAL---YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           +A  L     +L +  + P++ T +++L  C       RG+      +  H +   +   
Sbjct: 308 DAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE-IHGYAVRHALDTDVAVG 366

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           + ++++  +   +  +  +   LP + N++ W+ L+    M G
Sbjct: 367 SALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMHG 408



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YA+ GK   AR +F  + L D++SWN L++     G V D   L  +M   
Sbjct: 260 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM--- 316

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                     ++++    P   T ++ L  CA L    RGK+IH
Sbjct: 317 -------------------------QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIH 351

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  V   L  +V V +AL DMYAK G +  +R +FDR+  RN ++WN++I  Y  +G   
Sbjct: 352 GYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGG 411

Query: 240 KCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +   LF  M   G   P+EVT    L AC  +G +D   +LFH ++    V
Sbjct: 412 EATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 462


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/687 (32%), Positives = 370/687 (53%), Gaps = 57/687 (8%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           D +   G    E     LV  C ++ D+E+ KRL  ++  N      + L N L+  Y+K
Sbjct: 223 DEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLL-NCLVDMYSK 281

Query: 72  SGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            GK+  A  L  +      D++ W  L+S + +S  +   R LFDKM  R  VS+ T ++
Sbjct: 282 CGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMS 341

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+   G+  E+L++F +M+ +   P +   V+ L+AC  L D   G+ +H  IV   +  
Sbjct: 342 GYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLV 401

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           + F+ NAL D+YAK G++D+A   F+++  ++  SWN M+ G+ +               
Sbjct: 402 DGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCR--------------- 446

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                               +G +D A   F+ I EKD V W TM+  Y ++    ++  
Sbjct: 447 --------------------SGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFE 486

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           +F +M S +V+PDK ++ S++SSCAK+ +L HG  V+       +  D ++ +ALIDMY 
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYG 546

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           KCG  + A+ +F  +  +NV  W +M+  YA  GQ LEA+ LY ++ +  +KPD  TF++
Sbjct: 547 KCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIA 606

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           +L+AC H  L + G  +F+ + + + I P++ HY CM++LLGR   +++ V  I+ +P +
Sbjct: 607 LLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIE 666

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           P+  IWS+L+  C    +++  E A + L E++P N G +++LSN+YA  GRW+DV+ +R
Sbjct: 667 PDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVR 726

Query: 550 SSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK 609
           + +    V K   ++ IE +  VH+FV+ +    +   + +++ + +   QE        
Sbjct: 727 TKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADILCMLQDIERRLLVKQE-------- 778

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
             L DT  +        HSE+LA+A+ LI      +PIR++ ++R+C DCH  MK  S  
Sbjct: 779 --LSDTTSQ--------HSERLAVAFGLINNQEN-SPIRVVNSVRMCRDCHSVMKLISQA 827

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R I++RD+ RFH F  G+CSCKD W
Sbjct: 828 YDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 140/483 (28%), Positives = 233/483 (48%), Gaps = 80/483 (16%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +++ G ++++  LF+KM  RD +S+NT I+ +  KG  REAL +F  M      
Sbjct: 172 NNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVL 231

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P + T VS ++ CA+L DL  GK++H  IV   L     + N L DMY+K G++D+A  L
Sbjct: 232 PDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGL 291

Query: 214 FDRMNNR--NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             R +    ++V W  ++SGY+K                                   + 
Sbjct: 292 LSRCDESEVDVVLWTTLVSGYVK-----------------------------------SN 316

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
           +ID A +LF  + E+  V WTTM+ GY Q G   ++L LF +M  E+V PD+ ++ +V+S
Sbjct: 317 KIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLS 376

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +C  L     G+ VH   V  G+  D  + +AL+D+Y KCG  D+A   F  +P ++  S
Sbjct: 377 ACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAAS 436

Query: 392 WNSMINGYAQNG-----------------------------QDL--EALALYDKLLQENL 420
           WNSM++G+ ++G                              DL  E+  ++ K+   N+
Sbjct: 437 WNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNV 496

Query: 421 KPDSFTFVSVLSACLHADLFERG--QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           KPD  T +S+LS+C        G   N +   + + GI   L     +I++ G+   V+ 
Sbjct: 497 KPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEI-GIDAMLG--TALIDMYGKCGCVEM 553

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGP-YIMLSNMY 536
           A ++   +  K N  +W+ +++  AM+G      + A  L+ E+E     P ++    + 
Sbjct: 554 AYEIFTQIIEK-NVFVWTAMMAAYAMEGQ----ALEAIDLYLEMEERGVKPDHVTFIALL 608

Query: 537 AAC 539
           AAC
Sbjct: 609 AAC 611



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 130/541 (24%), Positives = 214/541 (39%), Gaps = 146/541 (26%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           +  L +C+   ++R    IH  ++  NL  +  + + +         +D A  +    + 
Sbjct: 39  IDLLKSCS---NIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHE 95

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV------------------- 260
              + WN ++   LK G P++ ++ +  M   G+  D  T                    
Sbjct: 96  PESIIWNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEV 155

Query: 261 ----------------SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                           +N++G   + G++ +  +LF  +  +D + W TMI  Y   G  
Sbjct: 156 HGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMY 215

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA- 363
            +AL LF+EML   V PD+ ++ S+VS+CAKL  L  G+ +H    +  VD+ L +  + 
Sbjct: 216 REALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLH----LYIVDNKLWIRGSL 271

Query: 364 ---LIDMYCKCGVTDDA----------------WT-----------------VFNMMPTR 387
              L+DMY KCG  D+A                WT                 +F+ M  R
Sbjct: 272 LNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNER 331

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           ++VSW +M++GY Q G   E+L L+ ++  EN+ PD    V+VLSAC+H + F+ G++  
Sbjct: 332 SLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS-V 390

Query: 448 DSISAVHGI-------TPSLDHYA------------------------CMINLLGRSSDV 476
            +    +G+          LD YA                         M++   RS  V
Sbjct: 391 HAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGV 450

Query: 477 DKAVDLIKSLPH----------------------------------KPNSLIWSTLLSVC 502
           DKA D    +P                                   KP+     +LLS C
Sbjct: 451 DKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSC 510

Query: 503 AMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           A  G + HG     ++ + E  I+A     L +MY  CG  E    I + +  KNV  + 
Sbjct: 511 AKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT 570

Query: 562 A 562
           A
Sbjct: 571 A 571


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 326/578 (56%), Gaps = 37/578 (6%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT   + S + ACAQ  +L   ++IH  +      G+ F+ N+L  MY K   +  AR +
Sbjct: 49  PTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNV 108

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD+M  +++VSW  +I+GY +N  P + I L   M      P+  T +++L A       
Sbjct: 109 FDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS 168

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G++D A  +F  +  K+ V W  +I G+
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            + G  E AL+ F EML        F+ SSV SS A+L +L  G+ VH   +        
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V + L+DMY K G   DA  VF+ +  +++V+WNSM+  +AQ G   EA++ ++++ + 
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +  +  TF+ +L+AC H  L + G+ +F+ +   + + P +DHY  ++ LLGR+  ++ 
Sbjct: 349 GVYLNQITFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHYVTVVALLGRAGLLNY 407

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+  I  +P +P + +W  LL+ C M  + K G+ AA H+FEL+P ++GP ++L N+YA+
Sbjct: 408 ALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W+  A +R  MK+  VKK  A SW+E++N VH FV+ D THP+ E IY+   ++ KK
Sbjct: 468 TGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKK 527

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+ P+   VL    ++EK  ++ YHSEKLALA+ LI+ P G T IRIMKNIR+CGD
Sbjct: 528 IRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGAT-IRIMKNIRICGD 586

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K+ S + GR I++RD+NRFHHF  G+CSC D W
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 159/318 (50%), Gaps = 13/318 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR G +    A+FDK+  ++ VS+N  I+GFA KG    AL  F+ M 
Sbjct: 186 DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEML 245

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ FE T +T+ S  ++ A+L  L +GK +H  ++        FV N L DMYAK G + 
Sbjct: 246 RNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMI 305

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDR++N++LV+WN M++ + + G  K+ +  F+EM+  G+  +++T   IL AC 
Sbjct: 306 DARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS 365

Query: 269 QTGRIDDAGRLFHVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +  R F ++KE D       + T++    + G    AL+   +M  E   P   
Sbjct: 366 HGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPME---PTAA 422

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++++C    +   GQ        L  DD       L ++Y   G  D A  V  MM
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDS-GPPVLLYNIYASTGQWDAAARVRMMM 481

Query: 385 PTRNV-----VSWNSMIN 397
            T  V      SW  M N
Sbjct: 482 KTTGVKKEPACSWVEMEN 499



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 164/370 (44%), Gaps = 73/370 (19%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D L +   A T   Y   +  C +  ++E A+++ +H+  + +  +  FL N L+H Y 
Sbjct: 39  LDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDA-FLDNSLIHMYC 97

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K                                 SV D R +FD+M  +D VS+ + IAG
Sbjct: 98  KCR-------------------------------SVLDARNVFDQMRRKDMVSWTSLIAG 126

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A      EA+ +   M K RF+P  +T  S L A     D   G+QIH   V      +
Sbjct: 127 YAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQIHALAVKCGWHED 186

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V+V +AL DMYA+ G++D A  +FD+++++N VSWN +ISG+ + G  +  +  F EM  
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLR 246

Query: 251 LGLNPDEVTVSNI------LGACFQ-----------------------------TGRIDD 275
            G      T S++      LGA  Q                             +G + D
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMID 306

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  +  KD V W +M+  + Q G  ++A+  F EM    V  ++ +   ++++C+ 
Sbjct: 307 ARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS- 365

Query: 336 LASLYHGQVV 345
                HG +V
Sbjct: 366 -----HGGLV 370



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 83/160 (51%), Gaps = 7/160 (4%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  AT   Y+ +     R+  +E  K + +H+ +   +  T F+ N LL  YAKSG +  
Sbjct: 248 GFEATHFTYSSVFSSIARLGALEQGKWVHAHV-IKSRQKLTAFVGNTLLDMYAKSGSMID 306

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFAN 133
           AR +FD++  +D+++WN++L+A A+ G  ++  + F++M       + +++   +   ++
Sbjct: 307 ARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSH 366

Query: 134 KGFSREALQVFSRMQKDRFEPT--DYTHVSALNACAQLLD 171
            G  +E  + F  M++   EP    Y  V AL   A LL+
Sbjct: 367 GGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLN 406


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 328/571 (57%), Gaps = 39/571 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           S+L +C  L  +R   Q+H +I       N+ V N L  MY + G ++ A+ LFD M+ R
Sbjct: 58  SSLLSCRNLFQVR---QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKR 114

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGR--- 272
           +  SW++++ GY K G    C  +F+E+   G   D+ +   ++ AC      + GR   
Sbjct: 115 HPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIH 174

Query: 273 ---------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                      ++DA ++F  + ++D   WT MI    ++G   
Sbjct: 175 CITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPV 234

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           ++L+ F+ M ++ + PDK ++ +VV +CAKL ++   + +H      G   D+++ +A+I
Sbjct: 235 ESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMI 294

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY KCG  + A  +F+ M  RNV++W++MI  Y  +GQ  +AL L+  +L+  + P+  
Sbjct: 295 DMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRI 354

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TFVS+L AC HA L E GQ  F S+   +G+TP + HY CM++LLGR+  +D+A+++I+ 
Sbjct: 355 TFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEG 414

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P + + ++W  LL  C +   +   E  AR L +L+    G Y++LSN+YA  G+WED+
Sbjct: 415 MPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDM 474

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A  R  M    ++K    +WIE+  K+++F   D+THP +  IY+ L +L +KL+ AG+ 
Sbjct: 475 AKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYH 534

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+T  VL+D  EE K   +  HSEKLA+A+ L+  P G  PIRI KN+RVCGDCH F KF
Sbjct: 535 PDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQG-HPIRITKNLRVCGDCHTFCKF 593

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S I  +TII+RD+ RFHHF  G CSC+D W
Sbjct: 594 VSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 125/243 (51%), Gaps = 8/243 (3%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  +AR   V+D   +F KM  RD  ++   I   A  G   E+L  F RM+     P 
Sbjct: 192 LVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPD 251

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
               V+ + ACA+L  + + K IH  I       +V +  A+ DMYAK G ++ ARW+FD
Sbjct: 252 KVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFD 311

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
           RM  RN+++W+ MI+ Y  +GQ +K ++LF  M   G+ P+ +T  ++L AC   G I++
Sbjct: 312 RMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEE 371

Query: 276 AGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
             R F  + ++  V      +T M+    + G+ ++AL +   M    V  D+    +++
Sbjct: 372 GQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGM---PVEKDEVLWGALL 428

Query: 331 SSC 333
            +C
Sbjct: 429 GAC 431



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 166/385 (43%), Gaps = 38/385 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            R++   N LL  +   G+++D + LFD M  R   S++  + G+A  G       +F  
Sbjct: 82  FRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRE 141

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           + +      DY+    + AC  L DL+ G+ IH   +   L    FV   L DMYA+   
Sbjct: 142 LLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKV 201

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           ++ A  +F +M  R+L +W +MI    ++G P + +  F  M+  G+ PD+V +  ++ A
Sbjct: 202 VEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYA 261

Query: 267 C-----------------------------------FQTGRIDDAGRLFHVIKEKDNVCW 291
           C                                    + G ++ A  +F  ++ ++ + W
Sbjct: 262 CAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITW 321

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV- 350
           + MI  Y  +G+ E AL LF  ML   + P++ +  S++ +C+    +  GQ        
Sbjct: 322 SAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWD 381

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMING-YAQNGQDLEA 408
             GV  D+   + ++D+  + G  D+A  +   MP  ++ V W +++         DL  
Sbjct: 382 EYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAE 441

Query: 409 LALYDKLLQENLKPDSFTFVSVLSA 433
                 L  ++ KP  +  +S + A
Sbjct: 442 RVARSLLKLQSQKPGHYVLLSNIYA 466



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
            D + ++G    + A   +V  C ++  +  AK + ++++   Y  +   L   ++  YA
Sbjct: 240 FDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDV-ILGTAMIDMYA 298

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNT 126
           K G +  AR +FD+M +R++I+W+A+++A+   G  +    LF  M     + + +++ +
Sbjct: 299 KCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVS 358

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
            +   ++ G   E  + FS M  +     D  H + +
Sbjct: 359 LLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCM 395


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/522 (39%), Positives = 310/522 (59%), Gaps = 42/522 (8%)

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD---------------- 256
           +F  ++N N+ +WN +I GY ++  P      +++M +  + PD                
Sbjct: 74  VFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLN 133

Query: 257 --------EVTVSN--------------ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                    VT+ N              I  AC   G  + A ++F ++KE+D V W +M
Sbjct: 134 VREGEAIHSVTIRNGFESLVFVQNSLLHIYAAC---GDTESAYKVFELMKERDLVAWNSM 190

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I G+  NG+  +AL LF EM  E V PD F++ S++S+ A+L +L  G+ VH   + +G+
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGL 250

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             +  V+++L+D+Y KCG   +A  VF+ M  RN VSW S+I G A NG   EAL L+ +
Sbjct: 251 SKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKE 310

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +  + L P   TFV VL AC H  + + G  +F  +    GI P ++HY CM++LL R+ 
Sbjct: 311 MEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAG 370

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            V +A + I+++P +PN++IW TLL  C + G +  GE+A  HL  LEP ++G Y++LSN
Sbjct: 371 LVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSN 430

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA+  RW DV  IR SM    VKK   YS +E+ N+V++F   DR+HP+++ +Y  L K
Sbjct: 431 LYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEK 490

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           + + L+  G+ P+T  VL D +EEEK +++ YHSEK+A+A+ L+  P G TPIR+MKN+R
Sbjct: 491 ITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPG-TPIRVMKNLR 549

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VC DCH+ +K  + I  R I++RD +RFHHF GG+CSCKD W
Sbjct: 550 VCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 149/319 (46%), Gaps = 37/319 (11%)

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++NT I G+A       A   + +M     EP  +T+   L A ++ L++R G+ IH   
Sbjct: 85  TWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREGEAIHSVT 144

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +       VFV+N+L  +YA  G+ + A  +F+ M  R+LV+WN MI+G+  NG+P + +
Sbjct: 145 IRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEAL 204

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRID---------------------------- 274
            LF+EM + G+ PD  TV ++L A  + G ++                            
Sbjct: 205 TLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLY 264

Query: 275 -------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                  +A R+F  + E++ V WT++IVG   NG  E+AL LF EM  + + P + +  
Sbjct: 265 AKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFV 324

Query: 328 SVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            V+ +C+    L  G +         G+   +     ++D+  + G+   A+     MP 
Sbjct: 325 GVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPV 384

Query: 387 R-NVVSWNSMINGYAQNGQ 404
           + N V W +++     +G 
Sbjct: 385 QPNAVIWRTLLGACTIHGH 403



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/193 (37%), Positives = 110/193 (56%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+LL  +A  G  +    +F+ M  RD V++N+ I GFA  G   EAL +F  M  +  E
Sbjct: 157 NSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVE 216

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T VS L+A A+L  L  G+++H  ++   L  N  V N+L D+YAK G I +A+ +
Sbjct: 217 PDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRV 276

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M+ RN VSW  +I G   NG  ++ ++LF+EM+  GL P E+T   +L AC   G +
Sbjct: 277 FSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGML 336

Query: 274 DDAGRLFHVIKEK 286
           D+    F  +KE+
Sbjct: 337 DEGFEYFRRMKEE 349



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/247 (28%), Positives = 130/247 (52%), Gaps = 5/247 (2%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  +F VI   +   W T+I GY ++     A + + +M+   V PD  +   ++ + +K
Sbjct: 71  AYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISK 130

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
             ++  G+ +H   +  G +  + V ++L+ +Y  CG T+ A+ VF +M  R++V+WNSM
Sbjct: 131 SLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSM 190

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           ING+A NG+  EAL L+ ++  E ++PD FT VS+LSA       E G+     +  V G
Sbjct: 191 INGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV-G 249

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           ++ +      +++L  +   + +A  +   +  + N++ W++L+   A+ G    GE A 
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER-NAVSWTSLIVGLAVNG---FGEEAL 305

Query: 516 RHLFELE 522
               E+E
Sbjct: 306 ELFKEME 312


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 236/680 (34%), Positives = 363/680 (53%), Gaps = 56/680 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF-DKMPIR-D 120
            R  H +A    L +    F         ++NALLS +AR G V D + LF    P R D
Sbjct: 187 GREAHAFALKNGLLHGHQRF---------AFNALLSMYARLGLVADAQRLFAGATPGRGD 237

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++NT ++     G   EA+Q    M      P   T  SAL AC++L  L  G+++H 
Sbjct: 238 VVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHA 297

Query: 181 KIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQ 237
            ++  + L  N FV +AL DMYA   ++ KAR +FD +  + + L  WN MI GY + G 
Sbjct: 298 YVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGM 357

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT-------------------------- 270
            ++ + LF  M+   G  P E T++++L AC ++                          
Sbjct: 358 DEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQN 417

Query: 271 ---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM--LSED- 318
                    G+ D A R+F ++   D V W T+I G    G   DA  L  EM  L E  
Sbjct: 418 ALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGG 477

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           V P+  ++ +++  CA LA+   G+ +HG AV   +D D+ V SAL+DMY KCG    + 
Sbjct: 478 VVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSR 537

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHA 437
            VF+ +P RN ++WN +I  Y  +G   EA  L+D++      +P+  TF++ L+AC H+
Sbjct: 538 AVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHS 597

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWS 496
            + +RG   F ++   HG+ P+ D  AC++++LGR+  +D+A  ++ S+      +  WS
Sbjct: 598 GMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWS 657

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           T+L  C +  ++  GE+A   L ELEP  A  Y++L N+Y+A G+W   A +RS M+ + 
Sbjct: 658 TMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRG 717

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           V K    SWIE+D  +H+F++ +  HP +E ++  +  L  ++   G++P+T  VLHD  
Sbjct: 718 VAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMD 777

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           + +K   +  HSEKLA+A+ L++   G T IR+ KN+RVC DCH   KF S ++GR I+L
Sbjct: 778 DGDKAAVLRCHSEKLAIAFGLLRAAPGAT-IRVAKNLRVCNDCHEAAKFLSKMVGREIVL 836

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC D W
Sbjct: 837 RDVRRFHHFRNGQCSCGDYW 856



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 209/476 (43%), Gaps = 76/476 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSR----- 146
           NALL+A+AR G +     +F  +     D+VS+N+ I+          AL +F R     
Sbjct: 100 NALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLIS----------ALCLFRRWDHAL 149

Query: 147 -----MQKDRFEPTDYTHVSALNACAQL----LDLRRGKQIHGKIVVGNL--GGNVFVRN 195
                M       T +T VS L A + L      +R G++ H   +   L  G   F  N
Sbjct: 150 AALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFN 209

Query: 196 ALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
           AL  MYA+ G +  A+ LF        ++V+WN M+S  +++G   + +    +M  LG+
Sbjct: 210 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 269

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC----------------------- 290
            PD VT ++ L AC +   + D GR  H    KD+                         
Sbjct: 270 RPDGVTFASALPACSRL-ELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 328

Query: 291 ----------------WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSC 333
                           W  MI GY Q G +E+AL LF  M +E    P + +++SV+ +C
Sbjct: 329 RQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPAC 388

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A+  +    + VHG  V  G+  +  V +AL+DMY + G TD A  +F M+   +VVSWN
Sbjct: 389 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 448

Query: 394 SMINGYAQNGQDLEALAL---YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           ++I G    G   +A  L     +L +  + P++ T +++L  C       RG+      
Sbjct: 449 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKE-IHGY 507

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  H +   +   + ++++  +   +  +  +   LP + N++ W+ L+    M G
Sbjct: 508 AVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMHG 562



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 29/231 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YA+ GK   AR +F  + L D++SWN L++     G V D   L  +M   
Sbjct: 414 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREM--- 470

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                     ++++    P   T ++ L  CA L    RGK+IH
Sbjct: 471 -------------------------QQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIH 505

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G  V   L  +V V +AL DMYAK G +  +R +FDR+  RN ++WN++I  Y  +G   
Sbjct: 506 GYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGG 565

Query: 240 KCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +   LF  M   G   P+EVT    L AC  +G +D   +LFH ++    V
Sbjct: 566 EATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGV 616


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/620 (36%), Positives = 347/620 (55%), Gaps = 45/620 (7%)

Query: 115 KMPIR---DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           K P+R   D        A F ++     A++    M++        T+   +  C+    
Sbjct: 11  KPPLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGA 70

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           ++ GK++H  I        +FV N L +MY K   +++A  LFD M  RN+VSW  MIS 
Sbjct: 71  VQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA 130

Query: 232 YLK--NGQPKKC-IDLFQEMQLLGLNPDEVTVSNILGAC-------------FQTG---- 271
           Y    N +  KC I +F+E    G+ P+  T S++L AC              +TG    
Sbjct: 131 YSNKLNDKALKCLILMFRE----GVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESD 186

Query: 272 ---------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                           +D+A  +F  +  +D V W ++I G+ QN    +AL LF  M  
Sbjct: 187 VFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKR 246

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
                D+ +++SV+ +C  LA L  G+ VH    VL  D DL++++ALIDMYCKCG  +D
Sbjct: 247 AGFLADQATLTSVLRACTGLALLELGRQVH--VHVLKFDQDLILNNALIDMYCKCGSLED 304

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A + F+ M  ++V+SW++M+ G AQNG   +AL L++ + +   +P+  T + VL AC H
Sbjct: 305 ANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSH 364

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           A L E+G  +F S+  + G+ P  +HY C+I+LLGR+  +D+AV LI  +  +P+S+ W 
Sbjct: 365 AGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWR 424

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           TLL  C +  ++     AA+ + ELEP +AG YI+LSN+YA   RWEDVA +R +M ++ 
Sbjct: 425 TLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRG 484

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           ++K    SWIE+D ++H F+  D +HP+ E I + L+ LI+++   G+ P+T  VL D +
Sbjct: 485 IRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLE 544

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
            E+K  S+ YHSEKLA+ + L+      T +RI KN+R+CGDCH+F K  S +  R+I++
Sbjct: 545 GEQKEDSLRYHSEKLAIMFGLMNLSREKT-VRIRKNLRICGDCHVFAKVVSRMEHRSIVI 603

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  R+HHF  G CSC D W
Sbjct: 604 RDPIRYHHFQDGVCSCGDYW 623



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 214/460 (46%), Gaps = 74/460 (16%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           H+  +A+D +   G  A    Y++L+  C+    V+  KR+  H+    YEP   F+ N 
Sbjct: 37  HRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKM-FVVNT 95

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL+ Y K   L  A DLFD+MP R+++SW  ++SA                         
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISA------------------------- 130

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                 ++NK  + +AL+    M ++   P  +T+ S L AC  L +LR   Q+H  I+ 
Sbjct: 131 ------YSNK-LNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIK 180

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +VFVR+AL D+Y+K  ++D A  +FD M  R+LV WN +I G+ +N    + ++L
Sbjct: 181 TGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNL 240

Query: 245 FQEMQLLGLNPDEVTVSNILGACF---------------------------------QTG 271
           F+ M+  G   D+ T++++L AC                                  + G
Sbjct: 241 FKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLKFDQDLILNNALIDMYCKCG 300

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            ++DA   F  + EKD + W+TM+ G  QNG    AL LF  M     RP+  ++  V+ 
Sbjct: 301 SLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLF 360

Query: 332 SCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NV 389
           +C+    +  G         + GVD        LID+  + G  D+A  + + M    + 
Sbjct: 361 ACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDS 420

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFV 428
           V+W +++ G  +  ++++ LA+Y       L+P D+ T++
Sbjct: 421 VTWRTLL-GACRVHRNVD-LAIYAAKKIIELEPEDAGTYI 458


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 336/621 (54%), Gaps = 72/621 (11%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           MQ +   P     V AL+ACA   +L  G+QIH  +V   L  N+ + N+L +MY K  +
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQD 60

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNG-----------QPKK--------------- 240
           +  A  +FD M  R++VSW  M++ Y +NG            P+K               
Sbjct: 61  VPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGN 120

Query: 241 -----CIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
                 ++LF  M+L GL  +E T+ ++L AC                            
Sbjct: 121 SKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAV 180

Query: 268 --------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ--NGKEEDALILFNEMLSE 317
                    + G + D  + F  ++EK  V W+ M+  Y Q  +G    A   F EM +E
Sbjct: 181 GNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAE 240

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDD 376
            ++P + +  S + +CA +A+L HG+ +H +A   G V+  L++ + +I+MY KCG   D
Sbjct: 241 GIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSD 300

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  VF+ MP + ++SWNS+I  YA NG  LEAL+   ++L +   PDS T VS+L    H
Sbjct: 301 AKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSH 360

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIW 495
           A L ERG  HF S    HG+ PS     C+++LL R   +D A +LI + P  + +++ W
Sbjct: 361 AGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAW 420

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            TLL+ C   GD + G   A  +FELEP ++G +++L+N+YA+ GRW D + IR  M+  
Sbjct: 421 MTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERM 480

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
           +VKK    SWIE+   VH+F+S +  HP+   I EEL KL  +++EAG+ P+T  V+HD 
Sbjct: 481 SVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDV 540

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +E +K + +  HSE+LA+ + L+    G T IR++KN+RVC DCH   K  S ++GR I+
Sbjct: 541 EEGDKEEILSRHSERLAIVFGLMSTRPGET-IRVVKNLRVCSDCHAATKIISSVVGREIV 599

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RDS+RFHHF  G CSC D W
Sbjct: 600 VRDSSRFHHFKHGQCSCGDFW 620



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 194/416 (46%), Gaps = 53/416 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            + N L++ Y K   +  A  +FD M LRD++SW A+L+ +A++G       +F+ MP +
Sbjct: 46  IISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRK 105

Query: 120 DSVSYNTAI-AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           D VS+N  I A   N  F ++AL++F  M+ +     ++T +S L AC  L DL+  +QI
Sbjct: 106 DDVSWNAVINASVGNSKF-QDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQI 164

Query: 179 HGKIVVGNLGGN-VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL--KN 235
           H +   G  GGN   V N++ +MYA+ G +   +  FD +  + LV+W++M++ Y   K+
Sbjct: 165 HARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKD 224

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
           G  ++    FQEM+  G+ P EVT  + L AC                            
Sbjct: 225 GSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVL 284

Query: 269 ---------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                    + G   DA  +F  + EK  + W ++IV Y  NG   +AL    EML +  
Sbjct: 285 GNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGF 344

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA----LIDMYCKCGVTD 375
            PD  +  S++   +    L  G V H ++ +   D  L  SS     L+D+  + G  D
Sbjct: 345 DPDSGTSVSILYGLSHAGLLERG-VEHFRSSIQ--DHGLEPSSGQLKCLVDLLARKGFLD 401

Query: 376 DAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFV 428
            A  +    P    + ++W +++      G     +   +++ +  L+P  S +FV
Sbjct: 402 AAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFE--LEPQHSGSFV 455



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/273 (25%), Positives = 128/273 (46%), Gaps = 33/273 (12%)

Query: 6   KLRQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K + A++  +     G  + E     L+  C  + D++LA+++ +      +  N+T + 
Sbjct: 122 KFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVG 181

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +++ YA+ G L   +  FD +  + +++W+ +L+A+A+S                   
Sbjct: 182 NSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQS------------------- 222

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                       G  R A + F  M+ +  +P + T VSAL+ACA +  L  G+ +H + 
Sbjct: 223 ----------KDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRA 272

Query: 183 VV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
              G +  ++ + N + +MY K G    A+ +FD+M  + L+SWN +I  Y  NG   + 
Sbjct: 273 AASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEA 332

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           +   QEM L G +PD  T  +IL      G ++
Sbjct: 333 LSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLE 365



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N +++ + + GS  D + +FD+MP +  +S+N+ I  +A+ G + EAL     M    F+
Sbjct: 286 NTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFD 345

Query: 154 PTDYTHVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P   T VS L   +    L RG +     I    L  +      L D+ A+ G +D A  
Sbjct: 346 PDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEE 405

Query: 213 LF--DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
           L         + ++W  +++     G P++ I   +  ++  L P       +L   + +
Sbjct: 406 LILASPACQADTIAWMTLLAACKSYGDPQRGIRCAE--RVFELEPQHSGSFVVLANLYAS 463

Query: 271 -GRIDDAGRL 279
            GR  DA R+
Sbjct: 464 VGRWSDASRI 473


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/532 (38%), Positives = 303/532 (56%), Gaps = 43/532 (8%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ----------------- 249
           +  AR LFDRM  R+  +W+ ++SGY ++GQP+  + L++ MQ                 
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSA 170

Query: 250 ------------------------LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
                                   +     D V  S +     + GR+DDA R+F  +  
Sbjct: 171 LAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPV 230

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           +D V WT M+  Y   G+  +   LF  ML +  VRP++F+ + V+ +CA+ A    G+ 
Sbjct: 231 RDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQ 290

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           VHG+    G  D     SAL+ MY KCG    A  VF  M   ++VSW ++I+GYAQNGQ
Sbjct: 291 VHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQ 350

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EAL  +D  L+  +KPD  TFV VLSAC HA L ++G   F SI   + I  + DHYA
Sbjct: 351 PEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYA 410

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           C+I+LL RS   ++A  +I ++  KPN  +W++LL  C +  ++     AA  LFE+EP 
Sbjct: 411 CVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPE 470

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           N   Y+ L+N+YA+ G +++V  +R  M+SK + K  A SWIE+  +VH F+  D++HP+
Sbjct: 471 NPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPK 530

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            + IY  L KL  K+ E G+  + + VLHD ++E+K + I YHSE+LA+A+ +I  P G 
Sbjct: 531 ADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEG- 589

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +PI++ KN+R+CGDCH  +K  S I+ R II+RDSNRFHHF  G CSC+D W
Sbjct: 590 SPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 184/390 (47%), Gaps = 52/390 (13%)

Query: 58  TTFLHNRLLHFYAK-SGKLFYARDLFDKMPLRDIISWNALLSAHARSGS-VQDLRALFDK 115
           +T L NRLLH  +     L  A  LF  +   DI S N L+SA +RS   +   R LFD+
Sbjct: 61  STVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDR 120

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP------TDYTHVSALNACAQL 169
           MP RD  +++  ++G+   G    AL ++ RMQ+   EP       ++T  SAL A A  
Sbjct: 121 MPQRDHFAWSALVSGYTRHGQPEAALALYRRMQE---EPGNDGADNEFTASSALAAAAAA 177

Query: 170 LDLRRGKQIHGKIV---VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
              R G+++H  +V   +   GG+  + +AL DMYAK G +D AR +FDRM  R+ VSW 
Sbjct: 178 RCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWT 237

Query: 227 LMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACFQ----------TGRIDD 275
            M+  Y   G+  +   LF  M +  G+ P+E T + +L AC Q           GR+  
Sbjct: 238 AMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAK 297

Query: 276 AG-------------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           +G                         R+F  + + D V WT +I GY QNG+ E+AL  
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYC 369
           F+  L   ++PD  +   V+S+CA    +  G ++ H       ++      + +ID+  
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLS 417

Query: 370 KCGVTDDAWTVF-NMMPTRNVVSWNSMING 398
           + G  + A  +  NM    N   W S++ G
Sbjct: 418 RSGQFERAEKMIGNMAVKPNKFLWASLLGG 447



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 136/251 (54%), Gaps = 9/251 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W+AL   +A+ G V D R +FD+MP+RD+VS+   +  + + G   E  ++F  M 
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHML 260

Query: 149 KDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + R   P ++T+   L ACAQ      G+Q+HG++     G + F  +AL  MY+K G++
Sbjct: 261 RTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDM 320

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  +F+ M   +LVSW  +ISGY +NGQP++ +  F      G+ PD VT   +L AC
Sbjct: 321 GSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC 380

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTT-----MIVGYTQNGKEEDALILFNEMLSEDVRPD 322
              G +D    +FH IKE+  +  T      +I   +++G+ E A  +   M    V+P+
Sbjct: 381 AHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMA---VKPN 437

Query: 323 KFSISSVVSSC 333
           KF  +S++  C
Sbjct: 438 KFLWASLLGGC 448


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 358/648 (55%), Gaps = 41/648 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  + R       R +F KMP+RD V++N  +AG+AN G    A+     MQ
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 149 -KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKG 204
                 P   T VS L   AQ   L +G  IH   +   L  N   V +  AL DMYAK 
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL----------- 253
            ++  A  +F  M  RN V+W+ +I G++   +  +  +LF++M + GL           
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 254 -------------------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
                                    + D    +++L    + G I++A   F  I  KD 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + +  ++ G  QNGK E+A ++F +M + ++ PD  ++ S++ +C+ LA+L HG+  HG 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            ++ G+  +  + ++LIDMY KCG  D +  VF+ MP R+VVSWN+MI GY  +G   EA
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
             L+  +  +   PD  TF+ +++AC H+ L   G++ FD+++  +GI P ++HY CM++
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LL R   +D+A   I+S+P K +  +W  LL  C +  +I  G+  +R + +L P   G 
Sbjct: 554 LLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGN 613

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           +++LSN+++A GR+++ A +R   K K  KK   YSWIEI+  +H FV  D++HP +  I
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDI 673

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y EL  ++  +++ G+  +T  VL D +EEEK K++ YHSEKLA+A+ ++      T I 
Sbjct: 674 YHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT-IF 732

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVCGDCH  +K+ + +  RTII+RD+NRFHHF  G CSC + W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 219/460 (47%), Gaps = 42/460 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           ++D   W   L  H   G +   R +FD++P  D+ +YN  I  ++  G    A+ ++  
Sbjct: 31  VKDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRS 90

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M + R  P  YT    L AC+ L+DLR G+ IH       L  ++FV  AL D+Y +   
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNIL- 264
              AR +F +M  R++V+WN M++GY  +G     I    +MQ   GL P+  T+ ++L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 265 -----GACFQTGRIDD--------------------------------AGRLFHVIKEKD 287
                GA FQ   I                                  A R+FH +  ++
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVH 346
           +V W+ +I G+    +  +A  LF +ML E +      S++S +  CA LA L+ G  +H
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                 G+  DL  S++L+ MY K G+ ++A   F+ +  ++ +S+ ++++G  QNG+  
Sbjct: 331 ALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE 390

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA  ++ K+   N++PD  T VS++ AC H    + G+    S+  + G+         +
Sbjct: 391 EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSL 449

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I++  +   +D +  +   +P + + + W+T+++   + G
Sbjct: 450 IDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHG 488



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 179/405 (44%), Gaps = 61/405 (15%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN--------AL 96
           +Q H  L    PN + L + LL   A+ G LF    +     LR  +  N        AL
Sbjct: 192 MQDHGGL---RPNASTLVS-LLPLLAQHGALFQGTSI-HAYCLRACLEQNEEQVLIGTAL 246

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L  +A+   +     +F  MP+R+ V+++  I GF       EA  +F  M  +      
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 157 YTHV-SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            T V SAL  CA L DL  G Q+H  I    +  ++   N+L  MYAK G I++A   FD
Sbjct: 307 ATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            +  ++ +S+  ++SG ++NG+ ++   +F++MQ   + PD  T+ +++ AC        
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQH 426

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G+ID + ++F  +  +D V W TMI GY  
Sbjct: 427 GKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV------LGV 354
           +G  ++A  LF  M ++   PD  +   ++++C+     + G V  GK          G+
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS-----HSGLVTEGKHWFDTMTHKYGI 541

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
              +     ++D+  + G+ D+A+     MP + +V  W +++  
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGA 586


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/639 (34%), Positives = 346/639 (54%), Gaps = 40/639 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N+LLS +A++GS +D   +F  MP RD +S+N+ +A     G    A+ +   M K R  
Sbjct: 491  NSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKA 550

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T  +AL+AC    +L + K +H  ++   +  N+ + N L  MY K G +D+A+ +
Sbjct: 551  MNYVTFTTALSAC---YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKV 607

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
               M  R++V+WN +I G+  +  P   I  F  M+  GL  + +T+ N+LG C      
Sbjct: 608  CKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYL 667

Query: 269  -------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                           Q G ++ +  +F V+  K++  W  +   
Sbjct: 668  LKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSA 727

Query: 298  YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
                G  E+AL     M ++ V  D+FS S  +++   L  L  GQ +H   + LG + D
Sbjct: 728  NAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELD 787

Query: 358  LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
              V +A +DMY KCG  DD + +  +   R+  SWN +I+  A++G   +A   + ++L 
Sbjct: 788  EYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLD 847

Query: 418  ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              LKPD  TFVS+LSAC H  L + G  +F S+++  G+  +++H  C+I+LLGRS  + 
Sbjct: 848  LGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLA 907

Query: 478  KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
            +A   I  +P  PN  +W +LL+ C + G+++ G  AA  LFEL   +   Y++ SN+ A
Sbjct: 908  EAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCA 967

Query: 538  ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
            +  RW DV ++R  M+S+++KK  A SWI++ NKV  F   D+ HP++  IY +L +L K
Sbjct: 968  STQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRK 1027

Query: 598  KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
              +E G  P+T   L DT EE+K  ++  HSE++ALA+ LI    G +P+RI KN+RVCG
Sbjct: 1028 MTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEG-SPLRIFKNLRVCG 1086

Query: 658  DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCH   K  S I+GR I++RDS RFHHF GG CSC D W
Sbjct: 1087 DCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/542 (26%), Positives = 250/542 (46%), Gaps = 77/542 (14%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ +++ GS++  + +FDKM  R+  S+N  I+GF   G+  +A+Q F  M ++   
Sbjct: 186 NTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVT 245

Query: 154 PTDYTHVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P+ Y   S + AC +   +  G +QIHG +V   L  NVFV  +L   Y   G + +A  
Sbjct: 246 PSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANK 305

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM------------------------ 248
           LF+ +   N+VSW  ++  Y  NG  K+ +++++ +                        
Sbjct: 306 LFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGD 365

Query: 249 -----QLLG------LNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                Q+LG      L+   V+V+N L + F     +++A R+F+ ++E+D + W ++I 
Sbjct: 366 KTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIIT 425

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
               NG+ E++L  F  M     + D  +IS+++ +C     L  G+ +HG     G++ 
Sbjct: 426 ASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLES 485

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ V ++L+ MY + G ++DA  VF+ MP R+++SWNSM+  + ++G+   A+ L  ++L
Sbjct: 486 NVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEML 545

Query: 417 QENLKPDSFTFVSVLSAC--------LHADLFERGQNH-----------------FDSIS 451
           +     +  TF + LSAC        +HA +     +H                  D   
Sbjct: 546 KTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQ 605

Query: 452 AVHGITPSLDHYACMINLLGRSSDVD-----KAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            V  I P  D       + G + D D     +A +L++      N +    LL  C M  
Sbjct: 606 KVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC-MSP 664

Query: 507 D--IKHGEMAARHL----FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
           D  +KHG     H+    FEL+       I    MYA CG     + I   + +KN   +
Sbjct: 665 DYLLKHGMPIHAHIVVAGFELDTYVQSSLI---TMYAQCGDLNTSSYIFDVLANKNSSTW 721

Query: 561 AA 562
            A
Sbjct: 722 NA 723



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 212/458 (46%), Gaps = 44/458 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + ++    +LL  +   GSV +   LF+++   + VS+ + +  +A+ G ++E L ++  
Sbjct: 281 MSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRH 340

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL-GGNVFVRNALTDMYAKGG 205
           ++ +    T  T  + +  C    D   G QI G ++   L   +V V N+L  M+    
Sbjct: 341 LRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYD 400

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +++A  +F+ M  R+ +SWN +I+    NG+ ++ +  F  M+      D +T+S +L 
Sbjct: 401 SVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLP 460

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    Q G  +DA  +FH +  +D + 
Sbjct: 461 ACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLIS 520

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W +M+  + ++GK   A++L  EML      +  + ++ +S+C  L  L   ++VH   +
Sbjct: 521 WNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKL---KIVHAFVI 577

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              V  +L++ + L+ MY K G+ D+A  V  +MP R+VV+WN++I G+A +      + 
Sbjct: 578 HFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQ 637

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY--ACMIN 468
            ++ + +E L  +  T V++L  C+  D   +      +   V G    LD Y  + +I 
Sbjct: 638 AFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGF--ELDTYVQSSLIT 695

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  +  D++ +  +   L +K NS  W+ + S  A  G
Sbjct: 696 MYAQCGDLNTSSYIFDVLANK-NSSTWNAIFSANAHYG 732



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 146/624 (23%), Positives = 258/624 (41%), Gaps = 112/624 (17%)

Query: 5   HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDV-ELAKRLQSHMDLNFYEPNTTFLHN 63
           HK  Q    ++  G   +      +V  C R   + E A+++  ++       N  F+  
Sbjct: 230 HKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNV-FVGT 288

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP------ 117
            LLHFY   G +  A  LF+++   +I+SW +L+  +A +G  +++  ++  +       
Sbjct: 289 SLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLIC 348

Query: 118 --------IR-------------------------DSVSY-NTAIAGFANKGFSREALQV 143
                   IR                          SVS  N+ I+ F N     EA +V
Sbjct: 349 TGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRV 408

Query: 144 FSRMQK----------------DRFEP--------------TDYTHVSA-LNACAQLLDL 172
           F+ MQ+                 RFE               TDY  +SA L AC     L
Sbjct: 409 FNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSAQHL 468

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           + G+ +HG I    L  NV V N+L  MYA+ G  + A  +F  M  R+L+SWN M++ +
Sbjct: 469 KWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASH 528

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------ 268
           +++G+    I L  EM       + VT +  L AC+                        
Sbjct: 529 VEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNLEKLKIVHAFVIHFAVHHNLIIG 588

Query: 269 --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                   + G +D+A ++  ++ E+D V W  +I G+  +      +  FN M  E + 
Sbjct: 589 NTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLL 648

Query: 321 PDKFSISSVVSSCAKLASLY-HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            +  +I +++ +C     L  HG  +H   VV G + D  V S+LI MY +CG  + +  
Sbjct: 649 SNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSY 708

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+++  +N  +WN++ +  A  G   EAL    ++  + +  D F+F   L+   +  +
Sbjct: 709 IFDVLANKNSSTWNAIFSANAHYGPGEEALKFIARMRNDGVDLDQFSFSVALATIGNLTV 768

Query: 440 FERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            + GQ      S +  +   LD Y     +++ G+  ++D    ++  +P   +   W+ 
Sbjct: 769 LDEGQQLH---SWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILP-IPKIRSKRSWNI 824

Query: 498 LLSVCAMKGDIKHGEMAARHLFEL 521
           L+S  A  G  +    A   + +L
Sbjct: 825 LISALARHGFFRQATEAFHEMLDL 848



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 200/449 (44%), Gaps = 62/449 (13%)

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           S  Q  RF    ++ +S  N          GK +H   V   +  N F  N L +MY+K 
Sbjct: 145 SNPQVSRFLQKGFSEISEGNV---------GKALHALCVKDVIQQNTFYTNTLVNMYSKF 195

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G I  A+ +FD+M +RN  SWN MISG+++ G   K +  F  M   G+ P    +++++
Sbjct: 196 GSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMV 255

Query: 265 GACFQT------------------------------------GRIDDAGRLFHVIKEKDN 288
            AC ++                                    G + +A +LF  I+E + 
Sbjct: 256 TACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNI 315

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT+++V Y  NG  ++ L ++  +    +     ++++V+ +C        G  + G 
Sbjct: 316 VSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGD 375

Query: 349 AVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            +  G+D   + V+++LI M+      ++A  VFN M  R+ +SWNS+I   A NG+  E
Sbjct: 376 VIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEE 435

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG-ITPS-LDHYAC 465
           +L  +  + + + K D  T  ++L AC  A   + G+        +HG IT S L+   C
Sbjct: 436 SLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGR-------GLHGLITKSGLESNVC 488

Query: 466 MINLL----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           + N L     ++   + A  +  ++P + + + W+++++     G   H  +    +  L
Sbjct: 489 VCNSLLSMYAQAGSSEDAELVFHTMPAR-DLISWNSMMASHVEDGKYSHAILLLVEM--L 545

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRS 550
           +   A  Y+  +   +AC   E +  + +
Sbjct: 546 KTRKAMNYVTFTTALSACYNLEKLKIVHA 574


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/693 (32%), Positives = 365/693 (52%), Gaps = 65/693 (9%)

Query: 5    HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
            H + +    L+ +G     E Y+  +  CTRV D+ L   +   +    ++ +  +L   
Sbjct: 505  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV-YLRCA 563

Query: 65   LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
            L++FY +   L  A  +F +MP  + + WN  +  + +S  +Q                 
Sbjct: 564  LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQ----------------- 606

Query: 125  NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC-AQLLDLRRGKQIHGKIV 183
                          + +++F +MQ    +    T V  L A  ++L  L  GK+ HG ++
Sbjct: 607  --------------KGVELFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVL 652

Query: 184  VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                  +V+V  +L DMY K   +  A+ +FD M NRN+ +WN ++SGY   G  +  + 
Sbjct: 653  RNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALR 712

Query: 244  LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
            L  +M+  G+ PD VT                               W  MI GY   G 
Sbjct: 713  LLNQMEKEGIKPDLVT-------------------------------WNGMISGYAMWGC 741

Query: 304  EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             ++AL  F +M  E V P+  SI+ ++ +CA L+ L  G+ +H  ++  G  +D+ V++A
Sbjct: 742  GKEALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATA 801

Query: 364  LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
            LIDMY K     +A  VF  +  + + SWN MI G+A  G   EA+++++++ +  + PD
Sbjct: 802  LIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPD 861

Query: 424  SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
            + TF ++LSAC ++ L   G  +FDS+   + I P L+HY CM++LLGR+  +D+A DLI
Sbjct: 862  AITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLI 921

Query: 484  KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             ++P KP++ IW  LL  C +  ++K  E AA++LF+LEP N+  YI++ N+Y+   RWE
Sbjct: 922  HTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWE 981

Query: 544  DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
            D+  +R  M +  V+    +SWI+I+ +VH F S+++ HP+   IY EL +L+ ++++ G
Sbjct: 982  DMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLG 1041

Query: 604  FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
            + P+   V  +  E EK K +  H+EKLA+ Y LIK   G  PIR++KN R+C DCH   
Sbjct: 1042 YVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAG-EPIRVIKNTRICSDCHSAA 1100

Query: 664  KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            K+ S +  R + LRD  RFHHF  G CSC D W
Sbjct: 1101 KYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1133


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/607 (37%), Positives = 330/607 (54%), Gaps = 73/607 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TFL N LL  YA+ G L  AR +FD MP R+  S+NALLSA AR G   D  ALF  +P 
Sbjct: 50  TFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPD 109

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            D  SYN  +A  A  G   +AL+  + M  D F    Y+  SAL+ACA     R G+Q+
Sbjct: 110 PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQV 169

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +   + G +V++  AL DMYAK    ++A+ +FD M  RN+VSWN +I+ Y +NG  
Sbjct: 170 HALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPV 229

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------- 267
            + + LF  M   G  PDEVT+++++ AC                               
Sbjct: 230 DEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNA 289

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---------------------- 300
                 + GR  +A  +F  +  +  V  T+MI GY +                      
Sbjct: 290 LVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAW 349

Query: 301 ---------NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH----- 346
                    N +EE+AL LF  +  E V P  ++  +V+++CA LA+L  GQ  H     
Sbjct: 350 NVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLK 409

Query: 347 -GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
            G     G + D+ V ++L+DMY K G   D   VF  M  R+ VSWN+MI GYAQNG+ 
Sbjct: 410 EGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRA 469

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            +AL L++++L  N +PDS T + VLSAC H+ L + G+ +F S++  HGI P+ DHY C
Sbjct: 470 KDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRDHYTC 529

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLGR+  + +  +LI+++P +P++++W++LL  C +  +I  GE AA  LFEL+P N
Sbjct: 530 MIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELDPDN 589

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           +GPY++LSNMYA  G+W DV  +R SMK + V K    SWIEI  KV+ F++ D  HP  
Sbjct: 590 SGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNIHPCR 649

Query: 586 EIIYEEL 592
             I++ L
Sbjct: 650 NEIHDTL 656



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 133/282 (47%), Gaps = 42/282 (14%)

Query: 160 VSALNACAQLLDLRRGK-------QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           VS L A A L DL R           H + +     G  F+ N L   YA+ G +  AR 
Sbjct: 12  VSHLRASAPLADLLRSAPGLRAARAAHARALRSPFAGETFLLNTLLSAYARLGSLHDARR 71

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD M +RN  S+N ++S                                   AC + GR
Sbjct: 72  VFDGMPHRNTFSYNALLS-----------------------------------ACARLGR 96

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
            DDA  LF  I + D   +  ++    Q+G+  DAL     M ++D   + +S +S +S+
Sbjct: 97  ADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSA 156

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA   +   G+ VH          D+ + +AL+DMY KC   ++A  VF+ MP RN+VSW
Sbjct: 157 CASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSW 216

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           NS+I  Y QNG   EALAL+ +++++   PD  T  SV+SAC
Sbjct: 217 NSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/658 (36%), Positives = 360/658 (54%), Gaps = 52/658 (7%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
            R  ++E A+     M L      TT  +N LL  Y ++     A  +F +MP RD+ S+
Sbjct: 28  ARTGNMEGARATFEAMPLR-----TTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASY 82

Query: 94  NALLSAHA-RSGSVQDLRALFDKMPIRDSV-SYNTAIAGFANKGFSREALQVFSRMQKDR 151
           NAL+S  + R  ++ D  A    +P   SV S+ + + G+   G   +A+Q+F +M    
Sbjct: 83  NALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQM---- 138

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
               +  H+S        LD  R  +   K+       +V    A+   Y + G +D+AR
Sbjct: 139 ---PERNHISYTVLLGGFLDAGRVDEAR-KLFDEMPAKDVVAWTAMLSGYCQVGRVDEAR 194

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            LFD M  RN+VSW  M+SGY +NGQ      LF+ M       +EV+ + +L    Q G
Sbjct: 195 TLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMP----ERNEVSWTAMLFGYIQAG 250

Query: 272 RIDDAGRLFHVIK-------------------------------EKDNVCWTTMIVGYTQ 300
           RI+DA  LF+ +                                E+D+  W+ +I  Y Q
Sbjct: 251 RIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQ 310

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           N    +AL  F EML   +RP+  S+ S+++ CA LA L +G+ VHG  +    D D+  
Sbjct: 311 NEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYA 370

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            SALI MY KCG  D A  VF+M   ++VV WNSMI GYAQ+G   EAL ++D +    +
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGM 430

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            PD  T++  L+AC +    + G++ F+S+    GI P L+HYACM++LLGR+  VD+A+
Sbjct: 431 VPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEAL 490

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
            LIK++P +P+++IW  L+  C M  + +  E++A+ L ELEP NAGPY++LS++Y + G
Sbjct: 491 YLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSG 550

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKKL 599
           RWED +++R  + S+++ K    SWIE D +VH F S D   H E   I + L KL   L
Sbjct: 551 RWEDASNMRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQEHASILKMLEKLDGLL 610

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            E+G+S +   VLHD  +E+K  S+ YHSE+ A+AY L+K P  + PIR+MKN+RVCG
Sbjct: 611 MESGYSADGSFVLHDIDDEQKTHSLRYHSERQAVAYGLLKIPEEL-PIRVMKNLRVCG 667



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 209/426 (49%), Gaps = 38/426 (8%)

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
           ++  NA ++  AR+G+++  RA F+ MP+R + SYN  +AG+        AL+VF RM  
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRM-- 74

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEI 207
               PT    +++ NA    L LRR         +  +    +V    +L   Y + G +
Sbjct: 75  ----PT--RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLL 128

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  LF +M  RN +S+ +++ G+L  G+  +   LF EM       D V  + +L   
Sbjct: 129 ADAIQLFRQMPERNHISYTVLLGGFLDAGRVDEARKLFDEMP----AKDVVAWTAMLSGY 184

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            Q GR+D+A  LF  + +++ V WT M+ GY QNG+   A  LF      +V P++  +S
Sbjct: 185 CQVGRVDEARTLFDEMPKRNVVSWTAMVSGYAQNGQVNLARKLF------EVMPERNEVS 238

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFNMMPT 386
               +      +  G++   + +   + D  L + + +I  + + G+ D A +VF+ M  
Sbjct: 239 ---WTAMLFGYIQAGRIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCE 295

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R+  +W+++I  Y QN   +EAL+ + ++L   ++P+  + +S+L+ C    + + G+  
Sbjct: 296 RDDGTWSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGRE- 354

Query: 447 FDSISAVHGI----TPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
                 VHG     +  +D YA   +I +  +  ++DKA  +      K + ++W+++++
Sbjct: 355 ------VHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPK-DVVMWNSMIT 407

Query: 501 VCAMKG 506
             A  G
Sbjct: 408 GYAQHG 413


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/703 (32%), Positives = 360/703 (51%), Gaps = 98/703 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+HFYA+ GK+   R LFD M  R+++SW +L                       
Sbjct: 166 FVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSL----------------------- 202

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                   I G++ +  S+EA+ +F +M +   EP   T V  ++ACA+L DL  GK++ 
Sbjct: 203 --------INGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVC 254

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I    +  +  + NAL DMY K G+I  AR +FD   N+NLV +N ++S Y+ +    
Sbjct: 255 SYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWAS 314

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI-------------------------- 273
             + +  EM   G  PD+VT+ + + AC Q G +                          
Sbjct: 315 DVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAII 374

Query: 274 ---------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED------ 318
                    + A ++F  +  K  V W ++I G  ++G  E A  +F+EML  D      
Sbjct: 375 DMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNT 434

Query: 319 -------------------------VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
                                    +  D+ ++  + S+C  L +L   + V        
Sbjct: 435 MIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKND 494

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  DL + +AL+DM+ +CG    A  VF  M  R+V +W + I   A  G    A+ L++
Sbjct: 495 IHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN 554

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L++ +KPD   FV++L+AC H    ++G+  F S+   HGI P + HY CM++LLGR+
Sbjct: 555 EMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRA 614

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++AVDLI+S+P +PN ++W +LL+ C    +++    AA  L +L P   G +++LS
Sbjct: 615 GLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLS 674

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G+W DVA +R  MK K V+K    S IE+   +H+F S D +H E   I   L 
Sbjct: 675 NIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLE 734

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           ++  +L EAG+ P+T  VL D  E+EK   +  HSEKLA+AY LI    G+ PIR++KN+
Sbjct: 735 EINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGI-PIRVVKNL 793

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F K  S +  R I +RD+NR+H F  G CSC+D W
Sbjct: 794 RMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 230/490 (46%), Gaps = 79/490 (16%)

Query: 94  NALLSAHARSGSVQDL---RALF--DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           N L+++  + G+++ L   R  F  D   +     YN  I G+A+ G   +A+ ++ +M 
Sbjct: 63  NKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQML 122

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P  YT    L+AC+++L L  G Q+HG ++   L G++FV N+L   YA+ G++D
Sbjct: 123 VMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVD 182

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
             R LFD M  RN+VSW  +I+GY      K+ + LF +M   G+ P+ VT+  ++ AC 
Sbjct: 183 LGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G I  A ++F     K+ V + T
Sbjct: 243 KLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNT 302

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y  +    D L++ +EML +  RPDK ++ S +++CA+L  L  G+  H   +  G
Sbjct: 303 IMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           ++    +S+A+IDMY KCG  + A  VF  MP + VV+WNS+I G  ++G    A  ++D
Sbjct: 363 LEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFD 422

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD---------------SISAVHGITP 458
           ++L+ +L     ++ +++ A +   +FE     F                 I++  G   
Sbjct: 423 EMLERDL----VSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLG 478

Query: 459 SLD--HYAC-----------------MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           +LD   + C                 ++++  R  D   A+ + K +  +  S  W+  +
Sbjct: 479 ALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVS-AWTAAI 537

Query: 500 SVCAMKGDIK 509
            V AM+G+ +
Sbjct: 538 GVMAMEGNTE 547



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 192/460 (41%), Gaps = 103/460 (22%)

Query: 8   RQAIDTLYSRGQAATEEAYTQLVL---DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           ++A+   +  G+A  E     +V     C ++ D+EL K++ S++     E +T  + N 
Sbjct: 213 KEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMV-NA 271

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K G +  AR +FD+   ++++ +N ++S +       D+  + D+M        
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEM-------- 323

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                           LQ   R       P   T +S + ACAQL DL  GK  H  ++ 
Sbjct: 324 ----------------LQKGPR-------PDKVTMLSTIAACAQLGDLSVGKSSHAYVLR 360

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP------ 238
             L G   + NA+ DMY K G+ + A  +F+ M N+ +V+WN +I+G +++G        
Sbjct: 361 NGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRI 420

Query: 239 -------------------------KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
                                    ++ I+LF+EMQ  G+  D VT+  I  AC   G +
Sbjct: 421 FDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGAL 480

Query: 274 D--------------------------------DAGRLFHVIK---EKDNVCWTTMIVGY 298
           D                                D     HV K   ++D   WT  I   
Sbjct: 481 DLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVM 540

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDD 357
              G  E A+ LFNEML + V+PD     +++++C+   S+  G Q+        G+   
Sbjct: 541 AMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPH 600

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMI 396
           ++    ++D+  + G+ ++A  +   MP   N V W S++
Sbjct: 601 IVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLL 640



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 151/330 (45%), Gaps = 9/330 (2%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D +  +G    +      +  C ++ D+ + K   +++  N  E     + N ++  Y 
Sbjct: 320 LDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLE-GWDNISNAIIDMYM 378

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK   A  +F+ MP + +++WN+L++   R G ++    +FD+M  RD VS+NT I  
Sbjct: 379 KCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGA 438

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
                   EA+++F  MQ         T V   +AC  L  L   K +   I   ++  +
Sbjct: 439 LVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVD 498

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + +  AL DM+++ G+   A  +F RM  R++ +W   I      G  +  I+LF EM  
Sbjct: 499 LQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLE 558

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN-----VCWTTMIVGYTQNGKEE 305
             + PD+V    +L AC   G +D   +LF  +++        V +  M+    + G  E
Sbjct: 559 QKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLE 618

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           +A+ L   M    + P+     S++++C K
Sbjct: 619 EAVDLIQSM---PIEPNDVVWGSLLAACRK 645



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 148/268 (55%), Gaps = 18/268 (6%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           +  +I GY   G  + A++L+ +ML   + PDK++   ++S+C+K+ +L  G  VHG  +
Sbjct: 98  YNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVL 157

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL--EA 408
            +G++ D+ VS++LI  Y +CG  D    +F+ M  RNVVSW S+INGY+  G+DL  EA
Sbjct: 158 KMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYS--GRDLSKEA 215

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           ++L+ ++ +  ++P+  T V V+SAC      E G+     IS + G+  S      +++
Sbjct: 216 VSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISEL-GMELSTIMVNALVD 274

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL-EPINAG 527
           +  +  D+  A  +     +K N ++++T++S      +  H E A+  L  L E +  G
Sbjct: 275 MYMKCGDICAARQIFDECANK-NLVMYNTIMS------NYVHHEWASDVLVILDEMLQKG 327

Query: 528 P----YIMLSNMYAACGRWEDVASIRSS 551
           P      MLS + AAC +  D++  +SS
Sbjct: 328 PRPDKVTMLSTI-AACAQLGDLSVGKSS 354


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/646 (34%), Positives = 355/646 (54%), Gaps = 39/646 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            +++  NA++  +++ G + + +  F K   ++ VS+NT I+ F+ +G   EA  +   M
Sbjct: 281 EEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEM 340

Query: 148 Q--KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           Q   +  +  + T ++ L AC   L LR  K++HG     +   +V + NA    YAK G
Sbjct: 341 QIQGEEMKANEVTILNVLPACLDKLQLRSLKELHG-YSFRHCFQHVELSNAFILAYAKCG 399

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            ++ A  +F  + ++ + SWN +I G+ +NG P+K + L  +M   G  PD  T+S++L 
Sbjct: 400 ALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLL 459

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                      G+   A  LF  +K+K+ V 
Sbjct: 460 ACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVS 519

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W  MI GY+QNG   ++L LF + LSE ++  + +I SV  +C++L++L  G+  HG  +
Sbjct: 520 WNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVL 579

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
                +D  V  ++IDMY K G   ++  VF+ +  +NV SWN++I  +  +G   EA+ 
Sbjct: 580 KALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIE 639

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           LY+++ +    PD FT++ +L AC HA L E G  +F  +   + I P L+HYAC+I++L
Sbjct: 640 LYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDML 699

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
            R+  +D A+ L+  +P + ++ IWS+LL  C   G ++ GE  A+ L ELEP  A  Y+
Sbjct: 700 ARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYV 759

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA  G+W+ V  +R  MK   ++K A  SWIE+  +V+ FV  D   P++  I  
Sbjct: 760 LLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRV 819

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
              +L +++ E G+ PNT  VLH+  EEEK+  +  HSEKLA+++ L+K   G T +RI 
Sbjct: 820 IWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTT-LRIY 878

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+C DCH   K  S  + R I++RD+ RFHHF  G CSC D W
Sbjct: 879 KNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/462 (29%), Positives = 208/462 (45%), Gaps = 71/462 (15%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
            +EA   L+  C    D+E  +RL   +  + +  N   L+ RL+  YA  G        
Sbjct: 42  AKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGS------- 94

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
               PL                    D R +FD M  ++ + +N  ++G+   G   + +
Sbjct: 95  ----PL--------------------DSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVV 130

Query: 142 QVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +VF  +  D  F+P ++T  S + AC  +LD+R G+ IHG ++   L  +VFV NAL  M
Sbjct: 131 KVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGM 190

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVT 259
           Y K G +D+A  +FD M   NLVSWN MI  + +NG  +   DL  EM    GL PD VT
Sbjct: 191 YGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVT 250

Query: 260 VSNILGACFQTGRID-----------------------------------DAGRLFHVIK 284
           V  IL  C   G +D                                   +A   F    
Sbjct: 251 VVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNN 310

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEM--LSEDVRPDKFSISSVVSSCAKLASLYHG 342
            K+ V W TMI  ++  G   +A  L  EM    E+++ ++ +I +V+ +C     L   
Sbjct: 311 NKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSL 370

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +HG +        + +S+A I  Y KCG  + A  VF+ +  + V SWN++I G+AQN
Sbjct: 371 KELHGYS-FRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQN 429

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           G   +AL L  ++     +PD FT  S+L AC H    + G+
Sbjct: 430 GDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGK 471



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 211/474 (44%), Gaps = 75/474 (15%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA-LTDMYAKGGEIDKARWLFDRMNNRN 221
           L AC    D+  G+++H  +       N +V N  L  MYA  G    +R +FD M  +N
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGACF------------ 268
           L+ WN ++SGY +NG     + +F ++       PD  T  +++ AC             
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169

Query: 269 -----------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  + G +D+A ++F  + E + V W +MI  +++NG   
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSR 229

Query: 306 DALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           D+  L  EML E+ + PD  ++ +++  CA    +  G  +HG AV LG+ ++++V++A+
Sbjct: 230 DSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAM 289

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD--KLLQENLKP 422
           + MY KCG  ++A   F     +NVVSWN+MI+ ++  G   EA  L    ++  E +K 
Sbjct: 290 VYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKA 349

Query: 423 DSFTFVSVLSAC-----------LHADLFERGQNHFDSISA-----------------VH 454
           +  T ++VL AC           LH   F     H +  +A                  H
Sbjct: 350 NEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFH 409

Query: 455 GIT-PSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKH 510
           GI   ++  +  +I    ++ D  KA+ L+  + +   +P+    S+LL  CA    +++
Sbjct: 410 GIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQY 469

Query: 511 GEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           G+    ++    LE        +LS+ Y  CG+      +   MK KN+  + A
Sbjct: 470 GKEIHGYVLRNGLETDFFVGTSLLSH-YIHCGKASSARVLFDRMKDKNLVSWNA 522



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 179/389 (46%), Gaps = 52/389 (13%)

Query: 8   RQAIDTLYS---RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R+A+  L+     GQ       + L+L C  +  ++  K +  ++  N  E +  F+   
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDF-FVGTS 491

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y   GK   AR LFD+M  ++++SWNA++S                          
Sbjct: 492 LLSHYIHCGKASSARVLFDRMKDKNLVSWNAMIS-------------------------- 525

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                G++  G   E+L +F +   +  +  +   VS   AC+QL  LR GK+ HG ++ 
Sbjct: 526 -----GYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK 580

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + FV  ++ DMYAK G I ++R +FD + ++N+ SWN +I  +  +G  K+ I+L
Sbjct: 581 ALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIEL 640

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC--------WTTMIV 296
           ++ M+ +G  PD  T   IL AC   G +++  + F   KE  N          +  +I 
Sbjct: 641 YERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYF---KEMQNFNLIEPKLEHYACLID 697

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              + G+ +DAL L NEM  E    D    SS++ SC    +L  G+ V  K  +L ++ 
Sbjct: 698 MLARAGRLDDALRLVNEMPEE---ADNRIWSSLLRSCRTFGALEIGEKVAKK--LLELEP 752

Query: 357 DLLVSSALI-DMYCKCGVTDDAWTVFNMM 384
           D   +  L+ ++Y   G  D    V  MM
Sbjct: 753 DKAENYVLLSNLYAGLGKWDGVRRVRQMM 781


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 341/606 (56%), Gaps = 48/606 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L  A+A SG +     L  +     ++ Y +AI   +++G     L + S M  +   PT
Sbjct: 62  LQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPT 121

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            +T  ++L AC     L  G+ +H       L G+ +V  AL  MYA+ G+   AR LFD
Sbjct: 122 AHTLSASLPACR---GLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFD 178

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M +                                   P  V+V+ +L      G +DD
Sbjct: 179 EMPD-----------------------------------PHVVSVTAMLTCYANMGALDD 203

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A RLF  +  KD +CW  MI GYTQ+GK  +AL LF  ML     PD+ ++  V+S+ A+
Sbjct: 204 ARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 336 LASLYHGQVVHG-----KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           L ++  G+ +H      + V L V     V++AL+DMYCKCG  +DA  VF+ +  +++V
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVR----VATALVDMYCKCGSLEDAVAVFHGIGNKDIV 319

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
            WN+MINGYA +G   +AL ++ +L  + L P   TF+ +L+AC H+ L E G++ F S+
Sbjct: 320 VWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSM 379

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              +GI P ++HY CM++LLGR+  +++A  L++SL   P++++W +LL+ C +  ++  
Sbjct: 380 EHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMAL 439

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           G+  A  L      N+G YI+LSN+YAA G+WE+VA +RS MK+  ++K    S IEID 
Sbjct: 440 GQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDR 499

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           KV++FV+ D +HP T+ IY  L K+   ++E G  P T+LVLHD  E  K K++  HSEK
Sbjct: 500 KVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEK 559

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ LI    G T I+I+KN+R C DCH  +K  S I  R I+ RD NRFHHFV G+C
Sbjct: 560 LAVAFGLISSRPGST-IKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSC 618

Query: 691 SCKDNW 696
           +C D W
Sbjct: 619 TCGDYW 624



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 175/337 (51%), Gaps = 10/337 (2%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           +++   LL  YA++G    AR LFD+MP   ++S  A+L+ +A  G++ D R LFD +P 
Sbjct: 154 SYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPR 213

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D + +N  I G+   G   EALQ+F RM +   EP + T V  L+A AQL  +  GK +
Sbjct: 214 KDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWL 273

Query: 179 HGKIVVGN-LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           H  +     +  NV V  AL DMY K G ++ A  +F  + N+++V WN MI+GY  +G 
Sbjct: 274 HSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGD 333

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWT 292
            +K +++F +++  GL P ++T   +L AC  +G +++    F  ++ +  +      + 
Sbjct: 334 SRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYG 393

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            M+    + G  E+A   F+ + S  + PD     S++++C    ++  GQ +    V  
Sbjct: 394 CMVDLLGRAGLIEEA---FHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVAN 450

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           G+ +  +    L ++Y   G  ++   V +MM    +
Sbjct: 451 GLANSGMY-ILLSNIYAAVGKWEEVARVRSMMKASGI 486



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 133/287 (46%), Gaps = 35/287 (12%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GL+ D      +  A   +GR+D +  L    K+   + +T+ I  ++  G     L L 
Sbjct: 51  GLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALL 110

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM---- 367
           ++MLSE + P   ++S+ + +C  L+    G+ +H  A  L +  D  V++AL+ M    
Sbjct: 111 SDMLSEGLLPTAHTLSASLPACRGLSL---GRALHAYAFKLALSGDSYVATALLSMYARA 167

Query: 368 ---------------------------YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
                                      Y   G  DDA  +F+ +P ++ + WN+MI+GY 
Sbjct: 168 GDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYT 227

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           Q+G+  EAL L+ ++L+ + +PD  T V VLSA       E G+     +     +  ++
Sbjct: 228 QHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNV 287

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
                ++++  +   ++ AV +   + +K + ++W+ +++  AM GD
Sbjct: 288 RVATALVDMYCKCGSLEDAVAVFHGIGNK-DIVVWNAMINGYAMHGD 333



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 7/110 (6%)

Query: 327 SSVVSSC--AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +S++++C  A+ AS  H  VV       G+D D  V+  L   Y   G  D + T+    
Sbjct: 28  ASLLAACSTARRASELHAAVVRK-----GLDSDRAVAFRLQRAYAASGRLDHSLTLLGRT 82

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
                + + S I+ ++  G  L  LAL   +L E L P + T  + L AC
Sbjct: 83  KDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPAC 132


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 232/689 (33%), Positives = 366/689 (53%), Gaps = 78/689 (11%)

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           K+ YA+DLF +         N+L+  +A  G +   R +FD+M  R+ VS+ + I G+A 
Sbjct: 162 KMGYAKDLFVQ---------NSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYAR 212

Query: 134 KGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           + F+++A+ +F RM +D    P   T V  ++ACA+L DL  G++++  I    +  N  
Sbjct: 213 RDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDL 272

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           + +AL DMY K   ID A+ LFD     NL   N M S Y++ G  ++ + +F  M   G
Sbjct: 273 MVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG 332

Query: 253 LNPDEVTVSNILGACFQTGRI-----------------------------------DDAG 277
           + PD +++ + + +C Q   I                                   D A 
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKE-------------------------------ED 306
           R+F  +  K  V W +++ GY +NG+                                E+
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 307 ALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           A+ +F  M S E V  D  ++ S+ S+C  L +L   + ++      G+  D+ + + L+
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DM+ +CG  + A ++FN +  R+V +W + I   A  G    A+ L+D ++++ LKPD  
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
            FV  L+AC H  L ++G+  F S+  +HG++P   HY CM++LLGR+  +++AV LI+ 
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +PN +IW++LL+ C ++G+++    AA  +  L P   G Y++LSN+YA+ GRW D+
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R SMK K ++K    S I+I  K H+F S D +HPE   I   L ++ ++    G  
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VL D  E+EK+  +  HSEKLA+AY LI    G T IRI+KN+RVC DCH F KF
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTT-IRIVKNLRVCSDCHSFAKF 811

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           AS +  R IILRD+NRFH+   G CSC D
Sbjct: 812 ASKVYNREIILRDNNRFHYIRQGKCSCGD 840



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 184/369 (49%), Gaps = 40/369 (10%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN+ I G+A+ G   EA+ +F RM      P  YT    L+ACA+      G QIHG IV
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIV 161

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 ++FV+N+L   YA+ GE+D AR +FD M+ RN+VSW  MI GY +    K  +D
Sbjct: 162 KMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVD 221

Query: 244 LFQEM-QLLGLNPDEVTVSNILGAC-----FQTGR------------------------- 272
           LF  M +   + P+ VT+  ++ AC      +TG                          
Sbjct: 222 LFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMY 281

Query: 273 -----IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                ID A RLF      +      M   Y + G   +AL +FN M+   VRPD+ S+ 
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S +SSC++L ++  G+  HG  +  G +    + +ALIDMY KC   D A+ +F+ M  +
Sbjct: 342 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 401

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            VV+WNS++ GY +NG+   A   ++ + ++N+     ++ +++S  +   LFE     F
Sbjct: 402 TVVTWNSIVAGYVENGEVDAAWETFETMPEKNI----VSWNTIISGLVQGSLFEEAIEVF 457

Query: 448 DSISAVHGI 456
            S+ +  G+
Sbjct: 458 CSMQSQEGV 466



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 168/352 (47%), Gaps = 35/352 (9%)

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL----VSWNLMISGYLKNGQPKKCIDL 244
           G  F+ N+L   YA  G  ++A  LF RM N  +     ++   +S   K+      I +
Sbjct: 97  GTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQI 156

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
              +  +G   D    ++++    + G +D A ++F  + E++ V WT+MI GY +    
Sbjct: 157 HGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFA 216

Query: 305 EDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           +DA+ LF  M+  E+V P+  ++  V+S+CAKL  L  G+ V+      G++ + L+ SA
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KC   D A  +F+     N+   N+M + Y + G   EAL +++ ++   ++PD
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 424 SFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
             + +S +S+C            H  +   G   +D+I               +I++  +
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNA------------LIDMYMK 384

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM-AARHLFELEP 523
               D A  +   + +K   + W+++++     G +++GE+ AA   FE  P
Sbjct: 385 CHRQDTAFRIFDRMSNK-TVVTWNSIVA-----GYVENGEVDAAWETFETMP 430



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 148/307 (48%), Gaps = 10/307 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+++ ++   K    ++  N +E     + N L+  Y K  +   A  +FD+M  + +++
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDN-ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 405

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN++++ +  +G V      F+ MP ++ VS+NT I+G        EA++VF  MQ    
Sbjct: 406 WNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEG 465

Query: 153 EPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              D  T +S  +AC  L  L   K I+  I    +  +V +   L DM+++ G+ + A 
Sbjct: 466 VNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAM 525

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ + NR++ +W   I      G  ++ I+LF +M   GL PD V     L AC   G
Sbjct: 526 SIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGG 585

Query: 272 RIDDAGRLFHVIKE-----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +     +F+ + +      ++V +  M+    + G  E+A+ L  +M  E   P+    
Sbjct: 586 LVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME---PNDVIW 642

Query: 327 SSVVSSC 333
           +S++++C
Sbjct: 643 NSLLAAC 649


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/528 (39%), Positives = 319/528 (60%), Gaps = 6/528 (1%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
              +CA    L  G+QIH       L GNVFV ++   MYA+ G  D A  +F+ M  R+
Sbjct: 18  GFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRD 77

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGACFQTGRIDDAGRLF 280
           +VSWN MISG+   G   + +D+F+E+  L    PD  T+++IL +     R++D   L 
Sbjct: 78  VVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPS-MGKARVEDIALLK 136

Query: 281 HVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            V  E   K  + W  M+  YT N    +A+ LF  M  + + PD  ++++V+ SC +++
Sbjct: 137 GVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVS 196

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G+ +H       +   +L+ +AL+DMY  CG   +A  VF+ M TR+VVSW S+I+
Sbjct: 197 ALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIIS 256

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
            Y ++G   EA+ L++K+  + L+PDS  FV++L+AC HA L + G+++F S+++   I 
Sbjct: 257 AYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIA 316

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P L+HYACM++LLGR+  + +A D I  +P KPN  +W  LL  C +  ++  G +AA  
Sbjct: 317 PKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADS 376

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           L  L P   G Y++LSN+YA  GRW DV+ +RS M+SK +KK    S  E+ ++VH F  
Sbjct: 377 LLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHI 436

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL 637
            D +HP++++IY++LS+L+++++E G++P  +  LHD +EE+K   +  HSEKLA+A+ L
Sbjct: 437 GDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLL 496

Query: 638 IKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           I    G TPIRI  N+R C DCH   K  S I GR IIL+D NR H+ 
Sbjct: 497 INTNPG-TPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYM 543



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 141/287 (49%), Gaps = 39/287 (13%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C   + + L +++ S       + N  F+ +  +  YA+ G+   A  +F++M  RD++S
Sbjct: 22  CAATDGLVLGRQIHSSTARLGLDGNV-FVAHSAISMYARCGRPDDAYQMFEEMQYRDVVS 80

Query: 93  WNALLSAHARSG-----------------------------------SVQD---LRALFD 114
           WNA++S  A +G                                    V+D   L+ +FD
Sbjct: 81  WNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFD 140

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           +M  +  +S+N  +A + N     EA+++F RMQKD  EP   T  + L +C ++  L  
Sbjct: 141 EMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSL 200

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GK+IH  I    +  ++ + NAL DMYA  G + +AR +FD M  R++VSW  +IS Y +
Sbjct: 201 GKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGR 260

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281
           +G  ++ IDLF++M   GL PD +    IL AC   G +D     F+
Sbjct: 261 HGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFY 307


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/544 (39%), Positives = 320/544 (58%), Gaps = 13/544 (2%)

Query: 159 HVSALNACAQLLDLRRG----KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           H  + N  A L+D  +      QIH  +    L  +  +   L   YA  G +D +  LF
Sbjct: 26  HFISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALF 85

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE--VTVSNILGACFQTGR 272
            R  N ++  W  +I G+   G      D+    QL    P++  V+++ +L    + G 
Sbjct: 86  GRTQNPSVFFWTAIIHGHALRG------DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGE 139

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +D A  LF  ++E+D VCW  MI GYTQNG   +AL+LF  ML    +P++ ++ SV+S+
Sbjct: 140 LDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSA 199

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C +L +L  G+ VH      G+  ++ V +AL+DMY KCG  +DA  VF+ +  ++VV+W
Sbjct: 200 CGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAW 259

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           NSMI GYA +G   EAL L+  + +  L P + TF+ +LSAC H+     G + F+ +  
Sbjct: 260 NSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKD 319

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +GI P ++HY CM+NLLGR+  V++A +L+K++  +P+ ++W TLL  C + G I  GE
Sbjct: 320 EYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGE 379

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
                L +    N+G YI+LSN+YAA G W+ VA +R+ MK   VKK    S IE++NKV
Sbjct: 380 KIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKV 439

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           H+F++    HP+ + IY  L ++   L+  G++P T +VLHD  E EK +S+  HSEKLA
Sbjct: 440 HEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLA 499

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +A+ LI    G T I+I+KN+RVC DCH   K  S I GR I++RD NRFHHFV G+CSC
Sbjct: 500 IAFGLINTQPGTT-IKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSC 558

Query: 693 KDNW 696
            D W
Sbjct: 559 GDYW 562



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 178/341 (52%), Gaps = 17/341 (4%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           + F    ++H +A  G +  A+ LFD MP + ++S  A+L+ +A+ G +   R LFD M 
Sbjct: 92  SVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGME 151

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            RD V +N  I G+   G   EAL +F RM K + +P + T +S L+AC QL  L  G+ 
Sbjct: 152 ERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRW 211

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +H  I    +  NV V  AL DMY+K G ++ AR +FD+++++++V+WN MI GY  +G 
Sbjct: 212 VHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGF 271

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWT 292
            ++ + LF+ M  +GL+P  +T   IL AC  +G + +   +F+ +K++  +      + 
Sbjct: 272 SQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYG 331

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV- 351
            M+    + G  E A  L   M   ++ PD     +++ +C       HG++  G+ +V 
Sbjct: 332 CMVNLLGRAGHVEQAYELVKNM---NIEPDPVLWGTLLGACR-----LHGKIALGEKIVE 383

Query: 352 LGVDDDLLVSSALI---DMYCKCGVTDDAWTVFNMMPTRNV 389
           L VD +L  S   I   ++Y   G  D    +  MM    V
Sbjct: 384 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGV 424


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/512 (38%), Positives = 317/512 (61%), Gaps = 5/512 (0%)

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G    ++FVR AL + YAK G  D AR  FD    R++   N+M++ Y+  G+  +   +
Sbjct: 69  GFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRV 128

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           F  M+      D V+ + ++      G +D A  +F+ + ++D   W++M+  YT+  + 
Sbjct: 129 FDGMR----ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRS 184

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           +DAL L+ EM +  V PD  ++ SV+S+C+ + +L  G  VH      GV+ D+ + +AL
Sbjct: 185 KDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTAL 244

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           IDMY KCG  +++  VF+ MP ++V++W+SMI G A +G   +AL+L+ ++L E L+P+ 
Sbjct: 245 IDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNE 304

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TF+ VL +C H  L   G+ +F S+S VHG+TP + HY CM++LLGRS  +++A  LI+
Sbjct: 305 VTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIR 364

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P+++IW  LL  C +  +++  E A   L  L+P   G Y++LSN+YA    WE 
Sbjct: 365 DMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEG 424

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           VA +R +++ + +++    S IE  N +H+F+S DR+HP ++ IY+ L +++ +L++AG+
Sbjct: 425 VAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGY 484

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
            P T LVL D  E+ K +++  HSEKLA+A+ L+  P G T +RI KN+R C DCH  +K
Sbjct: 485 KPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGST-LRITKNLRACEDCHSAIK 543

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             + +  R +I+RD NRFHHF  G CSCKD W
Sbjct: 544 LIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 170/353 (48%), Gaps = 15/353 (4%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            FL N +L  Y   G++  AR +FD M  RD++SWN ++  +A +G V   R +F+ M  
Sbjct: 106 VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDD 165

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD+ S+++ ++ +     S++AL+++  M+     P   T VS L+AC+ +  L  G ++
Sbjct: 166 RDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEV 225

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +    +  +V +  AL DMYAK G+I+ +  +F  M  +++++W+ MI G   +G  
Sbjct: 226 HQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFG 285

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTT 293
              + LF  M   GL P+EVT   +L +C   G + D  + F  +     V      +  
Sbjct: 286 HDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGC 345

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+    ++G  E+A  L  +M  E   PD     +++ +C    ++   +    K  VL 
Sbjct: 346 MVDLLGRSGHIEEAKQLIRDMPFE---PDAVIWRALLGACRIYKNVEVAEEAMAKLRVLD 402

Query: 354 VDDD---LLVSSALIDMYCKCGVTDDAWTV----FNMMPTRNVVSWNSMINGY 399
              D   +L+S+         GV +   T+       +P R+ + W + I+ +
Sbjct: 403 PHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEF 455



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 166/375 (44%), Gaps = 91/375 (24%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LH R L    KSG  F A DLF +          AL+ A+A++G     RA FD+ P RD
Sbjct: 61  LHARAL----KSG--FAAADLFVR---------TALVEAYAKAGRADLARAAFDEAPRRD 105

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
               N  +A +  +G   EA +VF  M++      D    + +              IHG
Sbjct: 106 VFLCNVMLAAYVTRGEVAEARRVFDGMRE-----RDMVSWNTM--------------IHG 146

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                               YA  GE+D AR +F+ M++R+  SW+ M+S Y K  + K 
Sbjct: 147 --------------------YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKD 186

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------------- 267
            ++L++EM+   +NPD  T+ ++L AC                                 
Sbjct: 187 ALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALID 246

Query: 268 --FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              + G I+++ R+FH +  KD + W++MI+G   +G   DAL LF+ MLSE ++P++ +
Sbjct: 247 MYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVT 306

Query: 326 ISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              V+ SC  L  +  G +     +VV GV   +     ++D+  + G  ++A  +   M
Sbjct: 307 FIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM 366

Query: 385 PTR-NVVSWNSMING 398
           P   + V W +++  
Sbjct: 367 PFEPDAVIWRALLGA 381


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 342/610 (56%), Gaps = 47/610 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR--FE 153
           L  A+A SG +    AL  + P   +V Y +AI   +++G  R AL + S M   R    
Sbjct: 62  LQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLL 121

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT +T  ++L AC  L     G+ +HG  V   L G  +V  AL  MYA+ GE   AR L
Sbjct: 122 PTAHTLSASLPACGCLAV---GRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARAL 178

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M                                    +P  V+V+ +L    + G++
Sbjct: 179 FDGMRP----------------------------------DPHVVSVTAMLSCYAKMGQL 204

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           DDA  LF  +  KD VCW  M+ GYTQ+G+  +AL LF +ML   V PD+ S+   +S+ 
Sbjct: 205 DDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAV 264

Query: 334 AKLASLYHGQVVHGKAVVLG----VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--- 386
           A+L +   G+ +H      G    V  +  V +AL+DMY KCG  ++A  VF  +     
Sbjct: 265 AQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGD 324

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R+VV+WN+MINGYA +G+  EAL  + +L  + L P   TF+ VL+AC H+ L + G+  
Sbjct: 325 RDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRAL 384

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F ++   +GI P ++HY CM++LLGR+  V++A DL++S+  KP++ +W++LL  C +  
Sbjct: 385 FAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHK 444

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           ++  G+  A +L      N+G Y++LSNMYAA G+W +V  +RS M++  V+K    S +
Sbjct: 445 NLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAV 504

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY 626
           E+  +V +FV+ DR+HP +  IY +L ++    +  G  P+T+LVLHD  +  K +++  
Sbjct: 505 EVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAV 564

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLALA+ LI  P   T I+I+KN+R C DCH  +K  S+  GR I+ RD NRFHHFV
Sbjct: 565 HSEKLALAFGLISTPP-RTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFV 623

Query: 687 GGNCSCKDNW 696
            G+CSC D W
Sbjct: 624 DGSCSCGDYW 633



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 177/346 (51%), Gaps = 23/346 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           ++   LL  YA++G+   AR LFD M P   ++S  A+LS +A+ G + D R LFD +P 
Sbjct: 157 YVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPR 216

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D V +N  + G+   G   EAL++F +M +   EP + + V AL+A AQL     G+ +
Sbjct: 217 KDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWL 276

Query: 179 HGKIVVGNLGG----NVFVRNALTDMYAKGGEIDKARWLFDRM---NNRNLVSWNLMISG 231
           H  +  G        N  V  AL DMY K G +++A  +F  +    +R++V+WN MI+G
Sbjct: 277 HSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMING 336

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC- 290
           Y  +G+ ++ ++ F +++  GL P ++T   +L AC  +G +D+   LF  ++E+  +  
Sbjct: 337 YAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVP 396

Query: 291 ----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
               +  M+    + G+ E+A  L   M     +PD    +S++ +C    +L  GQ V 
Sbjct: 397 KVEHYGCMVDLLGRAGRVEEAFDLVQSM---KAKPDAAMWASLLGACRLHKNLALGQRVA 453

Query: 347 GKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
              V  G+ +    +L+S    +MY   G   +   V +MM    V
Sbjct: 454 DYLVGNGLANSGTYVLLS----NMYAAAGKWREVGRVRSMMRASGV 495



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A  AS      +H  AV   VD D  V+  L   Y   G  D A  +    P    V + 
Sbjct: 32  AGCASASRAAEIHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYT 91

Query: 394 SMINGYAQNGQDLEALALYDKLL--QENLKPDSFTFVSVLSAC 434
           S I+ ++  G    ALAL  ++L  +  L P + T  + L AC
Sbjct: 92  SAIHAHSSRGLHRAALALLSEMLLSRHGLLPTAHTLSASLPAC 134


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 358/648 (55%), Gaps = 41/648 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  + R       R +F KMP+RD V++N  +AG+AN G    A+     MQ
Sbjct: 134 DLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQ 193

Query: 149 -KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKG 204
                 P   T VS L   AQ   L +G  IH   +   L  N   V +  AL DMYAK 
Sbjct: 194 DHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKC 253

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL----------- 253
            ++  A  +F  M  RN V+W+ +I G++   +  +  +LF++M + GL           
Sbjct: 254 KQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASA 313

Query: 254 -------------------------NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
                                    + D    +++L    + G I++A   F  I  KD 
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + +  ++ G  QNGK E+A ++F +M + ++ PD  ++ S++ +C+ LA+L HG+  HG 
Sbjct: 374 ISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGS 433

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            ++ G+  +  + ++LIDMY KCG  D +  VF+ MP R+VVSWN+MI GY  +G   EA
Sbjct: 434 VIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEA 493

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
             L+  +  +   PD  TF+ +++AC H+ L   G++ FD+++  +GI P ++HY CM++
Sbjct: 494 TTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVD 553

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LL R   +D+A   I+S+P K +  +W  LL  C +  +I  G+  +R + +L P   G 
Sbjct: 554 LLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGN 613

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           +++LSN+++A GR+++ A +R   K K  KK   YSWIEI+  +H FV  D++HP +  I
Sbjct: 614 FVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCSRDI 673

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y EL  ++  +++ G+  +T  VL D +EEEK K++ YHSEKLA+A+ ++      T I 
Sbjct: 674 YHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT-IF 732

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVCGDCH  +K+ + +  RTII+RD+NRFHHF  G CSC + W
Sbjct: 733 VTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/460 (26%), Positives = 219/460 (47%), Gaps = 42/460 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           ++D   W   L  H   G +   R +FD++P  D+ +YN  I  ++  G    A+ ++  
Sbjct: 31  VKDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRS 90

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M + R  P  YT    L AC+ L+DLR G+ IH       L  ++FV  AL D+Y +   
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNIL- 264
              AR +F +M  R++V+WN M++GY  +G     I    +MQ   GL P+  T+ ++L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 265 -----GACFQTGRIDD--------------------------------AGRLFHVIKEKD 287
                GA FQ   I                                  A R+FH +  ++
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVH 346
           +V W+ +I G+    +  +A  LF +ML E +      S++S +  CA LA L+ G  +H
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
                 G+  DL  S++L+ MY K G+ ++A   F+ +  ++ +S+ ++++G  QNG+  
Sbjct: 331 ALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAE 390

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EA  ++ K+   N++PD  T VS++ AC H    + G+    S+  + G+         +
Sbjct: 391 EAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSV-IIRGLALETSICNSL 449

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I++  +   +D +  +   +P + + + W+T+++   + G
Sbjct: 450 IDMYAKCGKIDLSRQVFDKMPAR-DVVSWNTMIAGYGIHG 488



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 179/405 (44%), Gaps = 61/405 (15%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN--------AL 96
           +Q H  L    PN + L + LL   A+ G LF    +     LR  +  N        AL
Sbjct: 192 MQDHGGL---RPNASTLVS-LLPLLAQHGALFQGTSI-HAYCLRACLEQNEEQVLIGTAL 246

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L  +A+   +     +F  MP+R+ V+++  I GF       EA  +F  M  +      
Sbjct: 247 LDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLS 306

Query: 157 YTHV-SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            T V SAL  CA L DL  G Q+H  I    +  ++   N+L  MYAK G I++A   FD
Sbjct: 307 ATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFD 366

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            +  ++ +S+  ++SG ++NG+ ++   +F++MQ   + PD  T+ +++ AC        
Sbjct: 367 EIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQH 426

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G+ID + ++F  +  +D V W TMI GY  
Sbjct: 427 GKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGI 486

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK------AVVLGV 354
           +G  ++A  LF  M ++   PD  +   ++++C+     + G V  GK          G+
Sbjct: 487 HGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS-----HSGLVTEGKHWFDTMTHKYGI 541

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
              +     ++D+  + G+ D+A+     MP + +V  W +++  
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGA 586


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/648 (34%), Positives = 360/648 (55%), Gaps = 42/648 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  +A+  S +    +F +MP RD V++N  +AG+A  G   + +     MQ
Sbjct: 163 DLFVSTALVDVYAKCASFRHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQ 222

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV----VGNLGGNVFVRNALTDMYAKG 204
            D   P   T V+ L   AQ   L +G+ +H   V    + +    V V  AL DMYAK 
Sbjct: 223 DDH-APNASTLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKC 281

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM---------------- 248
           G +  A  +F+ M  RN V+W+ ++ G++  G+  +   LF++M                
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASA 341

Query: 249 -----------------QLL---GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
                             LL   GL+ D    +++L    + G ID A  LF  +  KD 
Sbjct: 342 LRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDT 401

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V ++ ++ GY QNGK ++A  +F +M + +V+PD  ++ S++ +C+ LA+L HG+  HG 
Sbjct: 402 VSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGS 461

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +V G+  +  + +ALIDMY KCG  D +  +F++MP R++VSWN+MI GY  +G   EA
Sbjct: 462 VIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEA 521

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
            AL+  +  +  +PD  TF+ ++SAC H+ L   G+  F  ++  +GITP ++HY  M++
Sbjct: 522 TALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVD 581

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LL R   +D+A   I+ +P K +  +W  LL  C +  +I  G+  +  + +L P   G 
Sbjct: 582 LLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGN 641

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           +++LSN+++A GR+++ A +R   K +  KK    SWIEI+  +H F+  DR+H ++  I
Sbjct: 642 FVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEI 701

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y+EL  ++  + + G+  +T  VL D +EEEK K++ YHSEKLA+A+ ++      T I 
Sbjct: 702 YQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKT-IF 760

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+RVCGDCH  +K+ + +  R II+RD+NRFHHF  G CSC D W
Sbjct: 761 VTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 210/442 (47%), Gaps = 41/442 (9%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           G +   R LFD++P      YN  I  ++ +G +       S  ++   +P +YT    L
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFVL 136

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            AC+ LLDLR  + +H       L  ++FV  AL D+YAK      A  +F RM  R++V
Sbjct: 137 KACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDVV 196

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQ---------LLGLNP------------------- 255
           +WN M++GY  +G+    I     MQ         L+ L P                   
Sbjct: 197 AWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHAYSV 256

Query: 256 ---------DEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                    D V V   L   + + G +  A R+F  +  ++ V W+ ++ G+   G+  
Sbjct: 257 RACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRML 316

Query: 306 DALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           +A  LF +ML++ +      S++S + +CA L+ L  G+ +H      G+  DL   ++L
Sbjct: 317 EAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSL 376

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           + MY K G+ D A T+F+ M  ++ VS++++++GY QNG+  EA  ++ K+   N++PD 
Sbjct: 377 LSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDV 436

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            T VS++ AC H    + G+    S+  V GI         +I++  +   +D +  +  
Sbjct: 437 ATMVSLIPACSHLAALQHGKCGHGSV-IVRGIASETSICNALIDMYAKCGRIDLSRQIFD 495

Query: 485 SLPHKPNSLIWSTLLSVCAMKG 506
            +P + + + W+T+++   + G
Sbjct: 496 VMPAR-DIVSWNTMIAGYGIHG 516



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 144/294 (48%), Gaps = 38/294 (12%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  ++D+ L K+L + +  +    + T   N LL  YAK+G +  A  LFD+M ++D +S
Sbjct: 345 CANLSDLCLGKQLHALLAKSGLHTDLT-AGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS 403

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           ++AL+S                               G+   G + EA +VF +MQ    
Sbjct: 404 YSALVS-------------------------------GYVQNGKADEAFRVFRKMQACNV 432

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P   T VS + AC+ L  L+ GK  HG ++V  +     + NAL DMYAK G ID +R 
Sbjct: 433 QPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQ 492

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD M  R++VSWN MI+GY  +G  K+   LF +M+     PD+VT   ++ AC  +G 
Sbjct: 493 IFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGL 552

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEM-LSEDVR 320
           + +  R FH++  K  +      +  M+    + G  ++A      M L  DVR
Sbjct: 553 VTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVR 606



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 101/236 (42%), Gaps = 46/236 (19%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  YAK G++  +R +FD MP RDI+SWN                        
Sbjct: 471 TSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWN------------------------ 506

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ- 177
                  T IAG+   G  +EA  +F  M+    EP D T +  ++AC+    +  GK+ 
Sbjct: 507 -------TMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRW 559

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNG 236
            H       +   +     + D+ A+GG +D+A      M  + ++  W  ++       
Sbjct: 560 FHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGAC---- 615

Query: 237 QPKKCIDLFQEMQ--LLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           +  K IDL +++   +  L P+     V +SNI  A    GR D+A  +  + KE+
Sbjct: 616 RVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSA---AGRFDEAAEVRIIQKEQ 668


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 343/595 (57%), Gaps = 9/595 (1%)

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSAL 163
           S+   R LF  +   D   YNT I G ++      ALQ+F  M++     P  ++    L
Sbjct: 54  SLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLL 113

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            A A    L  G Q+H   V   L  ++FV   L  MYA+   +  AR +FD M   N+V
Sbjct: 114 KAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIV 173

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHV 282
           +WN +++   +    K    +F+ M +  L     T  NI+ A + + G +  A  +F  
Sbjct: 174 AWNAIVAACFRCEGVKDAEQVFRCMPIRNL-----TSWNIMLAGYTKAGELQLAREVFMK 228

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +  KD+V W+TMIVG+  NG   DA   F E+  E +RP++ S++ V+S+CA+  +   G
Sbjct: 229 MPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFG 288

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +++HG     G    + V++ALID Y KCG  D A  VF+ M  R+ VSW +MI G A +
Sbjct: 289 RILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMH 348

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA+ L++++ + N+KPDS TF+S+L AC HA L + G ++F  +   +GI P ++H
Sbjct: 349 GYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEH 408

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CM++L GR+  + +A D +  +P  PN ++W TLL  C++ G++       R L EL+
Sbjct: 409 YGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELD 468

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N+G +++LSN+YA  G+W+DVA++R SM  + +KK   +S IE++  ++ FV+ ++ +
Sbjct: 469 PENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQN 528

Query: 583 PETEIIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKP 641
                 +++L +++ +L+ E G+ P    VLHD + EEK  S+  HSEKLA+A+ + K P
Sbjct: 529 DIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLP 588

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G   IR++KN+R+C DCH  MK  S +    I++RD +RFH F  G+CSC+D W
Sbjct: 589 RG-RAIRVVKNLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 170/366 (46%), Gaps = 41/366 (11%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKL 75
           R   A  ++++   L     N   L   LQ H + + +   +  F+   L+  YA+   L
Sbjct: 98  RKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACL 157

Query: 76  FYARDLFDKM-------------------------------PLRDIISWNALLSAHARSG 104
            +AR +FD+M                               P+R++ SWN +L+ + ++G
Sbjct: 158 VFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAG 217

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
            +Q  R +F KMP++D VS++T I GFA+ G   +A   F  ++++   P + +    L+
Sbjct: 218 ELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLS 277

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           ACAQ      G+ +HG +        + V NAL D Y+K G +D AR +FD M  R+ VS
Sbjct: 278 ACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVS 337

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           W  MI+G   +G  ++ I LF EM+   + PD +T  +IL AC   G +D     F  + 
Sbjct: 338 WTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMV 397

Query: 285 EKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
               +      +  M+  Y + GK + A     +M    + P+     +++ +C+   +L
Sbjct: 398 NTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQM---PISPNDIVWRTLLGACSIHGNL 454

Query: 340 Y-HGQV 344
           Y  GQV
Sbjct: 455 YLAGQV 460


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/611 (34%), Positives = 334/611 (54%), Gaps = 37/611 (6%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           S ++      F +   S   L+    +      PT   + S + ACAQ  +L   + IH 
Sbjct: 25  SAAHRAVPISFPSSPASSTGLRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHA 84

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +    L G+ F+ N+L  MY K G +  AR +FD+M +R++VSW  +I+GY +N  P +
Sbjct: 85  HLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAE 144

Query: 241 CIDLFQEMQLLGLNPDEVTVSNIL---GAC------------------------------ 267
            I L  +M      P+  T +++L   GAC                              
Sbjct: 145 AIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLD 204

Query: 268 --FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              +  ++D A  +F  +  K+ V W  +I G+ +    E  L+ F EM         F+
Sbjct: 205 MYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFT 264

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            SS+ S+ A++ +L  G+ VH   +  G      V + ++ MY K G   DA  VF+ M 
Sbjct: 265 YSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMD 324

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
            R++V+WN+M+   AQ G   EA+A ++++ +  ++ +  TF+SVL+AC H  L + G++
Sbjct: 325 KRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKH 384

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           +FD +   + + P +DHY   ++LLGR+  + +A+  +  +P +P + +W  LL  C M 
Sbjct: 385 YFDMMKD-YNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 443

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
            + K G+ AA H+FEL+P + GP ++L N+YA+ G+W D A +R  MK+  VKK  A SW
Sbjct: 444 KNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSW 503

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           ++I+N VH FV++D THP++  IY    ++  ++++AG+ PNT  VL    E+E+   + 
Sbjct: 504 VQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLK 563

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           YHSEK+ALA+ LI  P G + IRIMKNIR+CGDCH   K+ S +  R I++RD+NRFHHF
Sbjct: 564 YHSEKIALAFALINMPAGAS-IRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHF 622

Query: 686 VGGNCSCKDNW 696
             G+CSC D W
Sbjct: 623 SEGSCSCGDYW 633



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 183/428 (42%), Gaps = 69/428 (16%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           LR+ +D L++   A T   Y  ++  C +  ++  A+ + +H+  +    +  FL N L+
Sbjct: 45  LRE-LDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDA-FLLNSLI 102

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           H Y K G                               +V D R +FDKMP RD VS+  
Sbjct: 103 HMYCKCG-------------------------------AVSDARHVFDKMPSRDVVSWTY 131

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            IAG+A      EA+ +   M + RF P  +T  S L A         G+Q+H   V  N
Sbjct: 132 LIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYN 191

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +V+V +AL DMYA+  ++D A  +FDR+ ++N VSWN +I+G+ +    +  +  F 
Sbjct: 192 WDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFA 251

Query: 247 EMQLLGLNPDEVTVSN-----------------------------------ILGACFQTG 271
           EMQ  G      T S+                                   +LG   ++G
Sbjct: 252 EMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSG 311

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            + DA ++F  + ++D V W TM+    Q G  ++A+  F E+    ++ ++ +  SV++
Sbjct: 312 SMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLT 371

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT-VFNMMPTRNVV 390
           +C+    +  G+          V  ++    + +D+  + G+  +A   VF M       
Sbjct: 372 ACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 431

Query: 391 SWNSMING 398
            W +++  
Sbjct: 432 VWGALLGA 439



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 12/307 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR   +     +FD++  ++ VS+N  IAGFA K      L  F+ MQ
Sbjct: 195 DVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQ 254

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ F  T +T+ S  +A A++  L +G+ +H  ++        FV N +  MYAK G + 
Sbjct: 255 RNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMV 314

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDRM+ R+LV+WN M++   + G  K+ +  F+E++  G+  +++T  ++L AC 
Sbjct: 315 DARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS 374

Query: 269 QTGRIDDAGRLFHVIK------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
             G + +    F ++K      E D+      ++G  + G  ++ALI   +M  E   P 
Sbjct: 375 HGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLG--RAGLLKEALIFVFKMPME---PT 429

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                +++ +C    +   GQ        L   DD      L ++Y   G  +DA  V  
Sbjct: 430 AAVWGALLGACRMHKNAKMGQYAADHVFELD-PDDTGPPVLLYNIYASTGKWNDAARVRK 488

Query: 383 MMPTRNV 389
           MM    V
Sbjct: 489 MMKATGV 495


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 229/683 (33%), Positives = 373/683 (54%), Gaps = 54/683 (7%)

Query: 65  LLHFYAKSGKLFYARDLFDKM----PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LLH   ++G L  A+ L   M     + DI    +L++ + R G+ QD R LFD+MP ++
Sbjct: 84  LLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMPEKN 143

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++   I G+        AL+VF  M K    P+DYT    L+AC    ++  GKQ+HG
Sbjct: 144 VVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHG 203

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +         + N+L  +Y K G ++     F R+ ++N+++W  MIS   ++    +
Sbjct: 204 YTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTE 263

Query: 241 C-IDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTG------------ 271
             ++LF +M    + P+E T+++++                G CF+ G            
Sbjct: 264 LGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTM 323

Query: 272 -------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---NGKEE--------DALILFNE 313
                    ++A RLF  +++   + W  MI G+ Q   + K++         AL +F +
Sbjct: 324 YLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRD 383

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ++   ++PD F+ SS++S C+ + +L  G+ +H + +  G   D++V+SAL++MY KCG 
Sbjct: 384 LVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGC 443

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A   F  MPTR +V+W SMI+GY+Q+G+  +A+ L++ ++    KP+  TFVS+LSA
Sbjct: 444 IEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSA 503

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C +A L E    +FD +   + I P +DHY CMI++  R   +D A   IK    +PN  
Sbjct: 504 CSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEA 563

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IWS+L++ C   G+++    AA  L EL+P     Y++L NMY + GRW DVA +R   K
Sbjct: 564 IWSSLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSK 623

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            +++      SWI I +KV+ F ++DR+HP++  +Y+ L  L++K +  G+ P     L+
Sbjct: 624 HEDLGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELY 683

Query: 614 DTQEEEK--VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
           D++E+ K    S+ +HSE+LA+A  L+K P GVT +RI KNI +C DCH  +KF S +  
Sbjct: 684 DSEEDGKPAAGSLKHHSERLAVALGLLKAPPGVT-VRITKNITMCRDCHSSIKFFSLLAN 742

Query: 672 RTIILRDSNRFHHFVGGNCSCKD 694
           R I++RDS R H F  G CSC D
Sbjct: 743 REIVVRDSKRLHKFKDGRCSCGD 765



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 211/472 (44%), Gaps = 90/472 (19%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           +V  L+ C +   L   K +HG +V      ++FV  +L ++Y + G    AR LFD M 
Sbjct: 81  YVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDARNLFDEMP 140

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------- 268
            +N+V+W  +I+GY  N QP   +++F EM  LG  P + T+  +L AC           
Sbjct: 141 EKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQ 200

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN-G 302
                                    ++G ++   R F  I +K+ + WTTMI    ++  
Sbjct: 201 VHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDEN 260

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             E  L LF +ML  +V P++F+++SV+S C     +  G+ V G    +G   +L V +
Sbjct: 261 YTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKN 320

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ-----------NGQDLEALAL 411
           + + +Y + G T++A  +F  M   +V++WN+MI+G+AQ             +  +AL +
Sbjct: 321 STMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKI 380

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISA------------------ 452
           +  L++  +KPD FTF S+LS C      E+G Q H  +I                    
Sbjct: 381 FRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNK 440

Query: 453 -----------VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTL 498
                      V   T +L  +  MI+   +      A+ L + +     KPN + + +L
Sbjct: 441 CGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSL 500

Query: 499 LSVCAMKGDIKHGEMAARHL------FELEPINAGPYIMLSNMYAACGRWED 544
           LS C+  G +   E A R+       + +EP+    Y  + +M+   GR +D
Sbjct: 501 LSACSYAGLV---EEAMRYFDMMQNEYHIEPL-MDHYGCMIDMFVRLGRLDD 548



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 144/278 (51%), Gaps = 28/278 (10%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N  ++ Y + G+   A  LF++M    +I+WNA++     SG  Q + +  D +  R 
Sbjct: 318 VKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMI-----SGFAQIMDSAKDDLHAR- 371

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                       ++GF  +AL++F  + +   +P  +T  S L+ C+ ++ L +G+QIH 
Sbjct: 372 ------------SRGF--QALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHA 417

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           + +      +V V +AL +MY K G I+ A   F  M  R LV+W  MISGY ++G+P  
Sbjct: 418 QTIKTGFLSDVVVNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHD 477

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMI 295
            I LF++M L G  P+E+T  ++L AC   G +++A R F +++ + ++      +  MI
Sbjct: 478 AIQLFEDMILAGAKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEPLMDHYGCMI 537

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             + + G+ +DA         +   P++   SS+V+ C
Sbjct: 538 DMFVRLGRLDDAYAFIKR---KGFEPNEAIWSSLVAGC 572



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 44/234 (18%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           +++ L++ Y K G + YA   F +MP R +++W +++S +++ G   D   LF+ M +  
Sbjct: 430 VNSALVNMYNKCGCIEYATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAG 489

Query: 120 ---DSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRG 175
              + +++ + ++  +  G   EA++ F  MQ +   EP              L+D    
Sbjct: 490 AKPNEITFVSLLSACSYAGLVEEAMRYFDMMQNEYHIEP--------------LMD---- 531

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLK 234
              H                 + DM+ + G +D A     R     N   W+ +++G   
Sbjct: 532 ---H--------------YGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSLVAGCRS 574

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTGRIDDAGRLFHVIKEKD 287
           +G  +  +  +   +LL L P  V T   +L     TGR  D  R+  + K +D
Sbjct: 575 HGNME--LAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHED 626


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/612 (36%), Positives = 353/612 (57%), Gaps = 44/612 (7%)

Query: 128 IAGFANKGFSREALQVFSRMQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
           +A F++ G   EAL  F RM +  +R +   ++ + A  A      + +G++IH    + 
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  NV V  A+  MY K G +D AR  F+ +  +N V+WN M++ Y  +G+ ++ ++LF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 246 QEM--QLLGLNPDEVTVSNILGAC-----FQTGR-------------------------- 272
           +EM  +     PD+ + S  + AC      + GR                          
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 273 ------IDDAGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKF 324
                 +++A ++F  I+ + D+VCW  MI  Y Q+G+ + AL L+  M  + D+ P + 
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQG 240

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +  +V+  CA+L++L  G+ +H +      D +LLVS+AL+ MY KCG  D+A  VF+ M
Sbjct: 241 TFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSM 300

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
             ++ +SWN++I+ YA +G   +AL LY ++  + +KP   TFV +LSAC H  L   G 
Sbjct: 301 KLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGL 360

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
           ++F  +   H I PS+ H+ C+I+LLGR   + +A  ++KS+P + N++ W +LL  C  
Sbjct: 361 DYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKT 420

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564
            GD+K G  AA  + +  P  +G Y++LSN+YAA GRW+DV  IR  M ++ VKK    S
Sbjct: 421 HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKS 480

Query: 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI 624
           WIEI + VH+FVS DR+HP+ E IY EL K++++++  G+ P+T  V HD +EEEK   +
Sbjct: 481 WIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLL 540

Query: 625 CYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHH 684
             HSEKLA+ Y  +  P G + +RI+KN+RVC DCH   KF S I GR I++RD+ RFH 
Sbjct: 541 VCHSEKLAIVYGNMVVP-GKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHL 599

Query: 685 FVGGNCSCKDNW 696
           F  G+CSC+D W
Sbjct: 600 FENGSCSCRDYW 611



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 152/315 (48%), Gaps = 23/315 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVF 144
           +D++   ALL+ +++ G +++ R +FD   IR   DSV +N  IA +A  G  ++AL ++
Sbjct: 169 KDVVVGTALLNMYSKCGDLEEARKVFDS--IRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 145 SRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
             M       P   T V+ ++ CA+L  L++G+ IH ++   N   N+ V NAL  MY K
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 286

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +D+A  +F  M  ++ +SWN +IS Y  +G   + + L+QEM L G+ P EVT   +
Sbjct: 287 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 346

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG-----YTQNGKEEDALILFNEMLSED 318
           L AC   G + D    F+ +++   +  +    G       + G+  +A ++   M    
Sbjct: 347 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSM---P 403

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA----LIDMYCKCGVT 374
           ++ +     S++ +C       HG +  G      V D +  +S     L ++Y   G  
Sbjct: 404 IQANAVQWMSLLGACKT-----HGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRW 458

Query: 375 DDAWTVFNMMPTRNV 389
            D   +  +M  R V
Sbjct: 459 KDVEKIRKIMAARGV 473



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 190/417 (45%), Gaps = 93/417 (22%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           ++  + +  +  ++   PN   +   ++  Y K G+L  AR  F+++  ++ ++WNA+++
Sbjct: 47  IDQGREIHRYARISGLLPNVV-VGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMT 105

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDR-FEPTD 156
            +              K+  RD                 REAL++F  M ++ R   P  
Sbjct: 106 NY--------------KLDGRD-----------------REALELFREMCERSRSARPDK 134

Query: 157 YTHVSALNACAQLLDLRRGKQIH------GKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           ++   A+ AC+ L DL +G++IH      GK     L  +V V  AL +MY+K G++++A
Sbjct: 135 FSFSIAIEACSNLEDLEQGREIHEMLRREGK----ELHKDVVVGTALLNMYSKCGDLEEA 190

Query: 211 RWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGAC- 267
           R +FD + ++ + V WN MI+ Y ++G+ K+ +DL++ M     L P + T   ++  C 
Sbjct: 191 RKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCA 250

Query: 268 ----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTT 293
                + GR                              +D+A  +FH +K KD + W T
Sbjct: 251 ELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNT 310

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I  Y  +G  + AL+L+ EM  + V+P + +   ++S+C+     + G V  G      
Sbjct: 311 IISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACS-----HGGLVADGLDYFYR 365

Query: 354 VDDDLLVSSA------LIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNG 403
           + DD  +  +      +ID+  + G   +A  V   MP + N V W S++     +G
Sbjct: 366 MQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 422



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 8   RQAIDTLYSRGQAATEEAYTQ----LVLD-CTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +QA+D LY      T+ A  Q     V+D C  ++ ++  + + + +    ++ N   + 
Sbjct: 220 KQALD-LYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANL-LVS 277

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD-- 120
           N L+H Y K G L  A D+F  M L+D ISWN ++S++A  G       L+ +M ++   
Sbjct: 278 NALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVK 337

Query: 121 --SVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPT 155
              V++   ++  ++ G   + L  F RMQ D R +P+
Sbjct: 338 PTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPS 375


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/622 (34%), Positives = 351/622 (56%), Gaps = 37/622 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+H Y + G    AR  FD++ ++D ++W  L+S  A+ G + D + L  + P+R
Sbjct: 143 FVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVR 202

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +S+ + IA ++    +REA+  F  M      P + T ++ L+ACA+L DL  G+ +H
Sbjct: 203 DVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLH 262

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
             +    +  +  +  AL DMYAK G+   A+ +FD +       SWN +I GY K+   
Sbjct: 263 LLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKH--- 319

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G +D A  LF  ++ +D + + +M+ GY
Sbjct: 320 --------------------------------GHVDVARSLFDEMEVRDIITFNSMMTGY 347

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL+LF  M   D+R D F++ +++++CA L +L  G+ +H       V+ D+
Sbjct: 348 IHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADI 407

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +AL+DMY KCG  D+A  VF  M  R+V +W +MI G A NG    AL  + ++  +
Sbjct: 408 YLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCD 467

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +P+S ++++VL+AC H+ L   G+ +FD +  ++ I P ++HY CMI+LLGRS  +D+
Sbjct: 468 GFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 527

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+DL+K++P +PN++IW+++LS C +   I   + AA HL +LEP   G Y+ L N+Y  
Sbjct: 528 AMDLVKTMPIQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYID 587

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +WE+ + IR  M+ + VKK A YS I +  +VHKFV  D++HP    I   L ++  +
Sbjct: 588 SRQWENASKIRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHR 647

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           L+  G+SP T  +  D  EEEK +++  HSEKLA+A+ LI     + P+ I KN+RVC D
Sbjct: 648 LKSLGYSPLTSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNL-PVHIRKNLRVCED 706

Query: 659 CHLFMKFASDIIGRTIILRDSN 680
           CH  +K  S +  R II+RD +
Sbjct: 707 CHSAIKLISRLWNREIIVRDRS 728



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 180/341 (52%), Gaps = 21/341 (6%)

Query: 6   KLRQAI---DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           + R+A+    T+ S G A  E     ++  C ++ D+EL + L   ++     P +  L 
Sbjct: 219 RAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRSLHLLVEEKGM-PTSENLV 277

Query: 63  NRLLHFYAKSGKLFYARDLFDKM---PLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
             L+  YAK G   +A+ +FD +   P     SWNA++  + + G V   R+LFD+M +R
Sbjct: 278 VALIDMYAKCGDFGHAQQVFDALGRGPRPQ--SWNAIIDGYCKHGHVDVARSLFDEMEVR 335

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +++N+ + G+ + G  REAL +F  M++      ++T V+ L ACA L  L++G+ +H
Sbjct: 336 DIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGALQQGRALH 395

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I    +  ++++  AL DMY K G +D+A  +F RM  R++ +W  MI+G   NG  K
Sbjct: 396 ACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGK 455

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI--DDAGRLFHVIKEKDNVCWT 292
             ++ F +M+  G  P+ V+   +L AC        GR+  D+   L+++  + ++  + 
Sbjct: 456 AALEHFYQMRCDGFQPNSVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH--YG 513

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            MI    ++G  ++A+ L   M    ++P+    +S++S+C
Sbjct: 514 CMIDLLGRSGLLDEAMDLVKTM---PIQPNAVIWASILSAC 551



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 120/288 (41%), Gaps = 43/288 (14%)

Query: 308 LILFNEMLSEDVRPDKFS---ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSA 363
            +LF  M    VRPD F+   +    SS ++  SL    ++H   +  +       VS++
Sbjct: 88  FLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSAAPFVSNS 147

Query: 364 LIDMYCKCGVTDDA--------------WT-----------------VFNMMPTRNVVSW 392
           LI MY + G+  DA              WT                 + +  P R+V+SW
Sbjct: 148 LIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISW 207

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            S+I  Y++  +  EA+  +  +L   + PD  T ++VLSAC      E G++    +  
Sbjct: 208 TSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSACAKLKDLELGRS-LHLLVE 266

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
             G+  S +    +I++  +  D   A  +  +L   P    W+ ++      G  KHG 
Sbjct: 267 EKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIID-----GYCKHGH 321

Query: 513 M-AARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           +  AR LF E+E  +   +  +   Y   G+  +   +  SM+  +++
Sbjct: 322 VDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLR 369


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/646 (34%), Positives = 351/646 (54%), Gaps = 47/646 (7%)

Query: 51  LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLR 110
           L+F E  TT  H +++H       L  A  +FD      + + + L+S       +    
Sbjct: 19  LSFLESCTTLSHLKIIH-----AHLIRAHTIFD------VFAASCLISISINKNLLDYAA 67

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
            +F ++   +   YN+ I GF+      ++   + + +++   P + T+   + AC Q  
Sbjct: 68  QVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKG 127

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  G Q HG+I+      +V+V+N+L  MY+  G+I  A ++F R++  ++VSW  M++
Sbjct: 128 SLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVA 187

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           GY+K+G                                    +  A +LF  + EK+ V 
Sbjct: 188 GYIKSGD-----------------------------------VTSARKLFDKMPEKNLVT 212

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+ MI GY +N   + A+ L+  + SE V  ++  + SV++SCA L +L  G+  H   +
Sbjct: 213 WSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYIL 272

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              +  +L++ +AL+DMY +CG  D A  VF+ +P R+ +SW ++I G+A +G   +AL 
Sbjct: 273 RNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALE 332

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
            + ++ +  L P   TF +VLSAC H  L ERG   F+S+   + I P L+HY CM++LL
Sbjct: 333 YFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLL 392

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR+  + +A   +  +P KPN+ IW  LL  C +  + +  E A + L EL+P ++G Y+
Sbjct: 393 GRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYV 452

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YA   +WE+V +IR  MK + V K   Y+  E+D KVHKF   D+THPE + I  
Sbjct: 453 LLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIER 512

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
              +++ K++ AG++ N    L D  EEEK  +I  HSEKLA+AY +++   G  PIRI+
Sbjct: 513 MWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTK-GHDPIRIV 571

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH   K  S +  R +I+RD NRFHHF GG CSC D W
Sbjct: 572 KNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/617 (34%), Positives = 350/617 (56%), Gaps = 37/617 (5%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+H YA  G    AR  FD++P++D + W  ++    R G + + R L  + P R+ V
Sbjct: 142 NPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVV 201

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+ + IAG++  G   +A+  F+ M  D  EP +   + AL+AC++L +L  G+ +H  +
Sbjct: 202 SWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLV 261

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKC 241
               +     +   L DMYAK G+I +A+ +FD +   +    WN++I GY K       
Sbjct: 262 GKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCK------- 314

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        G +D A  LF  +  +D + + +MI GY  +
Sbjct: 315 ----------------------------LGHVDIARSLFDQMGARDVITFNSMITGYIHS 346

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G+  DAL LF ++    +R D F++ S++++CA L +L  G+ +H       V++D+ + 
Sbjct: 347 GRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLV 406

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY KCG  D+A  VF+ M  R+V +W++MI G A NG  ++AL  + ++ ++  +
Sbjct: 407 TALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQ 466

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P S T+++VL+AC H+ L   G+ HF+ + ++H + P ++HY CMI+LL RS  +D+A+ 
Sbjct: 467 PTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMH 526

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           L++++P +PN++IW+++LS C +  +I     AA HL +L P     Y+ L N+Y    +
Sbjct: 527 LVQTMPMQPNAVIWASILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQ 586

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W +   IR  M+ + VKK A YS I +  +VHKFV  D++HP T  I   + ++ ++L+ 
Sbjct: 587 WVEAKRIRMLMEEQGVKKTAGYSSITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKS 646

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           AG+SP T  +  D  EEEK +++  HSEK+A+A+ LI  P  + PI IMKN+RVC DCH 
Sbjct: 647 AGYSPATSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPNL-PIHIMKNLRVCEDCHS 705

Query: 662 FMKFASDIIGRTIILRD 678
            +K  S +  R II+RD
Sbjct: 706 AIKLISQLWNREIIVRD 722



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 168/328 (51%), Gaps = 10/328 (3%)

Query: 12  DTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           + + S G    E A    +  C+++ ++E  + L   +     +  T  L   L+  YAK
Sbjct: 224 NCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKRIQ-MTDKLVVTLIDMYAK 282

Query: 72  SGKLFYARDLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
            G +  A+ +FD +   +    WN ++  + + G V   R+LFD+M  RD +++N+ I G
Sbjct: 283 CGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITG 342

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           + + G  R+ALQ+F ++++      ++T VS L ACA L  L +G+ +H  I    +  +
Sbjct: 343 YIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRIVEED 402

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V++  AL DMY K G +D+A  +F RM  R++ +W+ MI+G   NG     ++ F +M+ 
Sbjct: 403 VYLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQMKR 462

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEE 305
            G  P  VT   +L AC  +  +++  + F+ ++    +      +  MI    ++G  +
Sbjct: 463 DGFQPTSVTYIAVLTACSHSSLLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLD 522

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSC 333
           +A+ L   M    ++P+    +S++S+C
Sbjct: 523 EAMHLVQTM---PMQPNAVIWASILSAC 547



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 31/107 (28%)

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-------------------------------R 387
           +V++ LI MY   G+TDDA   F+ +P                                R
Sbjct: 139 IVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 198

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           NVVSW S+I GY++ G+  +A+  ++ +L + ++PD    +  LSAC
Sbjct: 199 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSAC 245


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 346/625 (55%), Gaps = 38/625 (6%)

Query: 108 DLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
           D R +FD+M +RDSVSYNT I G+       E++++F     D+F+P   T  S L AC 
Sbjct: 260 DARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACG 318

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
            L DL   K I+  ++         VRN L D+YAK G++  AR +F+ M  ++ VSWN 
Sbjct: 319 HLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNS 378

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT------VSNIL----------------G 265
           +ISGY+++G   + + LF+ M ++    D +T      VS  L                G
Sbjct: 379 IISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSG 438

Query: 266 ACF-------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
            C              + G + D+ ++F  +   D V W T+I    + G     L +  
Sbjct: 439 ICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTT 498

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +M   +V PD  +    +  CA LA+   G+ +H   +  G + +L + +ALI+MY KCG
Sbjct: 499 QMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCG 558

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             +++  VF  M  R+VV+W  MI  Y   G+  +AL  +  + +  + PDS  F++++ 
Sbjct: 559 CLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIY 618

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H+ L + G   F+ +   + I P ++HYAC+++LL RS  + KA + I+++P KP++
Sbjct: 619 ACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDA 678

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            IW+++L  C   GD++  E  +R + EL P + G  I+ SN YAA  +W+ V+ IR S+
Sbjct: 679 SIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSL 738

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K K++ K   YSWIE+   VH F S D + P++E IY+ L  L   + + G+ P+ + V 
Sbjct: 739 KDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVS 798

Query: 613 HD-TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
            +  +EEEK + IC HSE+LA+A+ L+    G TP+++MKN+RVCGDCH   K  S I+G
Sbjct: 799 QNLEEEEEKRRLICGHSERLAIAFGLLNTEPG-TPLQVMKNLRVCGDCHEVTKLISKIVG 857

Query: 672 RTIILRDSNRFHHFVGGNCSCKDNW 696
           R I++RD+NRFH F  G CSCKD W
Sbjct: 858 REILVRDANRFHLFKDGTCSCKDRW 882



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/432 (29%), Positives = 221/432 (51%), Gaps = 42/432 (9%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P ++   +N+ I  F+  G   EAL+ + ++++ +  P  YT  S + ACA L D   G 
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            ++ +I+      ++FV NAL DMY++ G + +AR +FD M  R+LVSWN +ISGY  +G
Sbjct: 127 LVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHG 186

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------------- 267
             ++ ++++ E++   + PD  TVS++L A                              
Sbjct: 187 YYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNN 246

Query: 268 ------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                  +  R  DA R+F  +  +D+V + TMI GY +    E+++ +F E L +  +P
Sbjct: 247 GLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKP 305

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  ++SSV+ +C  L  L   + ++   +  G   +  V + LID+Y KCG    A  VF
Sbjct: 306 DLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVF 365

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADL- 439
           N M  ++ VSWNS+I+GY Q+G  +EA+ L+  ++    + D  T++ ++S     ADL 
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLK 425

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           F +G  H + I +  GI   L     +I++  +  +V  ++ +  S+    +++ W+T++
Sbjct: 426 FGKGL-HSNGIKS--GICIDLSVSNALIDMYAKCGEVGDSLKIFSSM-GTGDTVTWNTVI 481

Query: 500 SVCAMKGDIKHG 511
           S C   GD   G
Sbjct: 482 SACVRFGDFATG 493



 Score =  188 bits (478), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 204/402 (50%), Gaps = 37/402 (9%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           F A+ G L Y + + D     D+   NAL+  ++R G +   R +FD+MP+RD VS+N+ 
Sbjct: 120 FDAEMGDLVYEQ-ILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSL 178

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           I+G+++ G+  EAL+++  ++     P  +T  S L A   LL +++G+ +HG  +   +
Sbjct: 179 ISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGV 238

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
              V V N L  MY K      AR +FD M+ R+ VS+N MI GYLK    ++ + +F E
Sbjct: 239 NSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE 298

Query: 248 MQLLGLNPDEVTVSNILGAC-----------------------------------FQTGR 272
             L    PD +TVS++L AC                                    + G 
Sbjct: 299 -NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +  A  +F+ ++ KD V W ++I GY Q+G   +A+ LF  M+  + + D  +   ++S 
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
             +LA L  G+ +H   +  G+  DL VS+ALIDMY KCG   D+  +F+ M T + V+W
Sbjct: 418 STRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTW 477

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           N++I+   + G     L +  ++ +  + PD  TF+  L  C
Sbjct: 478 NTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMC 519



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 132/276 (47%), Gaps = 14/276 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL+  +A+ G V D   +F  M   D+V++NT I+     G     LQV ++M+
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMR 501

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K    P   T +  L  CA L   R GK+IH  ++       + + NAL +MY+K G ++
Sbjct: 502 KSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLE 561

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            +  +F+RM+ R++V+W  MI  Y   G+ +K ++ F +M+  G+ PD V    I+ AC 
Sbjct: 562 NSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACS 621

Query: 269 QTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
            +G +D+    F  +K    +        C   ++    +  K E+ +       +  ++
Sbjct: 622 HSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFI------QAMPIK 675

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           PD    +SV+ +C     +   + V  + + L  DD
Sbjct: 676 PDASIWASVLRACRTSGDMETAERVSRRIIELNPDD 711



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 10/178 (5%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM- 384
           IS  +SS + L  L   + +H   + LG+D     S  LID Y        + +VF  + 
Sbjct: 10  ISRALSSSSNLNEL---RRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVS 66

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF--ER 442
           P +NV  WNS+I  +++NG   EAL  Y KL +  + PD +TF SV+ AC  A LF  E 
Sbjct: 67  PAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEM 124

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           G   ++ I  + G    L     ++++  R   + +A  +   +P + + + W++L+S
Sbjct: 125 GDLVYEQILDM-GFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLIS 180



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 42  AKRLQSHMD---LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           AKRL   +    L F   +   + N L+  Y+K G L  +  +F++M  RD+++W  ++ 
Sbjct: 524 AKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIY 583

Query: 99  AHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           A+   G  +     F  M     + DSV +   I   ++ G   E L  F +M+
Sbjct: 584 AYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMK 637


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/699 (33%), Positives = 377/699 (53%), Gaps = 84/699 (12%)

Query: 14  LYSRGQA--ATEEAYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYA 70
           ++SR  A  +    Y  L+  C R + +++ +RL + +          TFLHN LL FYA
Sbjct: 2   IWSRHTALSSVSRHYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYA 61

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAI 128
             G                  +W A              R +FD++P   +D+V + T +
Sbjct: 62  SCG-----------------CAWQA--------------RKVFDEIPHSHKDTVDWTTLM 90

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
             F     S EAL +F  M++   +P + T V     CA+L D+  G Q HG +V   LG
Sbjct: 91  GCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVVVGAQGHGCMVKMGLG 150

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           G     NA+ DMYAK G + +AR +F  M  +++VSW +++ G +++   +    +F EM
Sbjct: 151 GVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVIRSEGVRNGRVVFDEM 210

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                               E++ V WT MI GY  +G  +++ 
Sbjct: 211 -----------------------------------PERNEVAWTIMIAGYLDSGLTQESF 235

Query: 309 ILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSALID 366
            L  EM+ + ++  +  ++ S++++C++   L  G+ VH  A+     + +++V +A++D
Sbjct: 236 ALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVD 295

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KCG    A+  F  MP RNVVSWN+M++G A +G    AL ++ ++ +E  KPD  T
Sbjct: 296 MYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVT 354

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           F SVLSAC H+ L ++G  +F ++ +V+GITP ++HYACM++LLGR+  +++A  L++ +
Sbjct: 355 FTSVLSACSHSGLVDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREM 414

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +PN ++  +LL  C++ G ++ GE   + L +L+P N   +I+LSNMYA  G+     
Sbjct: 415 PIRPNEVVLGSLLGSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRAN 474

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
           S+R  +K + +KK    S I +  +VH+F + D++HP T  +Y  L ++I +L+ AG++P
Sbjct: 475 SLRQVLKKRGIKKVPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAP 534

Query: 607 NTKL-------VLHD--TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           NT L        L D   ++EEK +++  HSEKLA+ + LI    GV P+ I KN+R+C 
Sbjct: 535 NTALQTFAGCDSLEDDLVEQEEKEQALFSHSEKLAICFGLISTGPGV-PLHIFKNLRICQ 593

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K  S I  R I++RD NRFH F  G+CSC D W
Sbjct: 594 DCHSAIKIVSKIYNREIVIRDRNRFHCFKEGSCSCCDYW 632


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/641 (33%), Positives = 347/641 (54%), Gaps = 42/641 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL  +   GS  D++ +FD+M +++ VS+   I+ +A  G   +A+++FS MQ     
Sbjct: 126 NCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIR 185

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P    ++S L +C     L  GKQIH  ++   L  N+ V  A+ +MY + G ++ A+ +
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLV 245

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD M+ +N V+W  ++ GY +  + +  ++LF  M + G+  DE   S +L  C      
Sbjct: 246 FDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDW 305

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G I+ A R F  I E ++V W+ +I G+
Sbjct: 306 DMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGF 365

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+G+ ED + +F  + SE V  + F  +SV  +CA  A+L  G   HG A+  G+   L
Sbjct: 366 SQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYL 425

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              SA++ MY KCG  D A   F  +   + V+W ++I+GYA +G   EAL  + ++   
Sbjct: 426 YGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSY 485

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++P++ TF++VL+AC H+ L    + +  S+S  +G+ P++DHY CMI+   R+  + +
Sbjct: 486 GVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQE 545

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A++LI  +P +P+++ W +LL  C    D+K G++AA +LF L+P +   YI+L N+Y+A
Sbjct: 546 ALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSA 605

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+WE+   +R  M  + +KK  + SWI +  +VH+FV  DR HP+TE IY +L +    
Sbjct: 606 FGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCS 665

Query: 599 LQEAGFSPNTKLVLHD---TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
           + +   SP   L   D        + + +  HSEKLA+A+ LI       PI + KN+R 
Sbjct: 666 VID---SPVRLLNEEDDVSCSLSARKEQLLDHSEKLAIAFGLISTEDN-APILVFKNLRA 721

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH F K  S + GR I++RDS RFHHF  G CSC D W
Sbjct: 722 CRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 762



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 198/421 (47%), Gaps = 43/421 (10%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI-- 182
           N  +   + +G  +EA      M       T +++     AC +L  L  G+ IH ++  
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            V N  G++   N L  MY   G     + +FD M  +NLVSW ++IS Y KNG+ +K I
Sbjct: 116 TVKNPSGSI--ENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAI 173

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACF---------------------------------- 268
            LF +MQ  G+ P+     ++L +C                                   
Sbjct: 174 RLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMY 233

Query: 269 -QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G ++ A  +F  +  ++ V WT ++VGYTQ  K E AL LF  M  E V  D+F  S
Sbjct: 234 VRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFS 293

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            V+  C  L     G+ +H   V LG + ++ V + L+D Y KCG  + A+  F  +   
Sbjct: 294 IVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERGQNH 446
           N VSW+++I+G++Q+G+  + + ++  L  E +  +SF + SV  AC   A+L    Q H
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAH 413

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            D+I    G+   L   + M+ +  +   +D A    +S+  +P+++ W+ ++S  A  G
Sbjct: 414 GDAIK--RGLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHG 470

Query: 507 D 507
           +
Sbjct: 471 N 471



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 36/323 (11%)

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
           NP     + +L      G   D  ++F  +  K+ V W  +I  Y +NG+ E A+ LF++
Sbjct: 119 NPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSD 178

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M +  +RP+     S++ SC   + L  G+ +H   +   ++ ++ V +A+ +MY +CG 
Sbjct: 179 MQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGW 238

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A  VF+ M  +N V+W  ++ GY Q  +   AL L+ ++  E ++ D F F  VL  
Sbjct: 239 LEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKV 298

Query: 434 CLHADLFERGQNHFDSI------SAVHGITPSLDHY------------------------ 463
           C   + ++ G+     I      S V   TP +D Y                        
Sbjct: 299 CCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSW 358

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKP---NSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           + +I+   +S  ++  + +  SL  +    NS I++++   CA + ++  G  A     +
Sbjct: 359 SALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK 418

Query: 521 LEPIN--AGPYIMLSNMYAACGR 541
              ++   G   M++ MY+ CGR
Sbjct: 419 RGLVSYLYGESAMVT-MYSKCGR 440


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/747 (31%), Positives = 389/747 (52%), Gaps = 83/747 (11%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
           +T  +  Q+ ++CT     E    ++S   L F +  T  +  + +H +      F    
Sbjct: 46  STPLSLGQIAMNCTEAVKGEKGNEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFC--- 102

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRA--LFDKMPIRDSVSYNTAIAGFANKGFSR 138
                   D  + + LL+A+A S     + A  +F+++P  +   +NT I G+A+     
Sbjct: 103 --------DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRGYASSSDPT 154

Query: 139 EALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           ++  +F  M     E P  +T      A ++L  L  G  +HG ++  +L  ++F+ N+L
Sbjct: 155 QSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSL 214

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            + Y   G  D A  +F  M  +++VSWN MI+ +   G P K + LFQEM++  + P+ 
Sbjct: 215 INFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQEMEMKDVKPNV 274

Query: 258 VTVSNILGAC-----------------------------------FQTGRIDDAGRLFHV 282
           +T+ ++L AC                                    + G I+DA  LF+ 
Sbjct: 275 ITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNK 334

Query: 283 IKEKDNVCWTTMIVG-------------------------------YTQNGKEEDALILF 311
           + EKD V WTTM+ G                               Y QNGK   AL LF
Sbjct: 335 MSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLF 394

Query: 312 NEM-LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           +EM LS+D +PD+ ++   + + A+L ++  G  +H       ++ +  ++++L+DMY K
Sbjct: 395 HEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAK 454

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  + A  VF+ +  ++V  W++MI   A  GQ   AL L+  +L+  +KP++ TF ++
Sbjct: 455 CGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNI 514

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L AC HA L   G+  F+ +  ++GI P + HY C++++ GR+  ++KA   I+ +P  P
Sbjct: 515 LCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPP 574

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            + +W  LL  C+  G+++  E+A ++L ELEP N G +++LSN+YA  G WE V+++R 
Sbjct: 575 TAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRK 634

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+  +VKK    S I+++  VH+F+  D +HP ++ IY +L ++ +K +  G+ P+   
Sbjct: 635 LMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSN 694

Query: 611 VLHDTQEEEKV-KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
           +L  ++E+  + +S+  HSEKLA+A+ LI       PIRI+KNIR+CGDCH F K  S +
Sbjct: 695 LLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASS-QPIRIVKNIRICGDCHAFAKLVSQL 753

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R I+LRD  RFHHF GG CSC D W
Sbjct: 754 YDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 362/698 (51%), Gaps = 96/698 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRM--- 147
           NAL++ ++R GS+++   +FD++  R   D +S+N+ ++       +  AL +FS+M   
Sbjct: 49  NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 108

Query: 148 --QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             +K   E +D    V+ L AC  L  + + K++HG  +      +VFV NAL D YAK 
Sbjct: 109 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC 168

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF------------------- 245
           G ++ A  +F+ M  +++VSWN M++GY ++G  K   +LF                   
Sbjct: 169 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 228

Query: 246 ----------------QEMQLLGLNPDEVTVSNILGACFQTGRI---------------- 273
                           ++M   G  P+ VT+ ++L AC   G                  
Sbjct: 229 AGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 288

Query: 274 ---DDAG-------------------RLFHV---------IKEKDNVCWTTMIVGYTQNG 302
              +D G                   R F           ++E++ V WT MI G+ Q G
Sbjct: 289 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 348

Query: 303 KEEDALILFNEMLSE--DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--L 358
              DAL LF EM+SE   V P+ ++IS ++ +CA LA++  G+ +H   +     D    
Sbjct: 349 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY 408

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++ LI+MY KCG  D A  VF+ M  ++ +SW SM+ GY  +G+  EAL ++DK+ + 
Sbjct: 409 FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 468

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PD  TF+ VL AC H  + ++G ++FDS+SA +G+TP  +HYA  I+LL R   +DK
Sbjct: 469 GFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDK 528

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A   +K +P +P +++W  LLS C +  +++  E A   L E+   N G Y ++SN+YA 
Sbjct: 529 AWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 588

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            GRW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  L  LI +
Sbjct: 589 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 648

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P T   LHD  EEEK   +  HSEKLALAY L+    G  PIRI KN+RVCGD
Sbjct: 649 IKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPG-CPIRITKNLRVCGD 707

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH    + S I+   I++RD +RFHHF  G+CSC   W
Sbjct: 708 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 228/473 (48%), Gaps = 76/473 (16%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQD 108
           N +E N  F+ N L+  Y++ G L  A  +FD++  R   D+ISWN+++SAH +S +   
Sbjct: 39  NGFESNV-FICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 97

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
              LF KM                        L V  +   +R +     ++  L AC  
Sbjct: 98  ALDLFSKM-----------------------TLIVHEKPTNERSDIISIVNI--LPACGS 132

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  + + K++HG  +      +VFV NAL D YAK G ++ A  +F+ M  +++VSWN M
Sbjct: 133 LKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 192

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++GY ++G  K   +LF+ M+   +  D VT                             
Sbjct: 193 VAGYSQSGNFKAAFELFKNMRKENIPLDMVT----------------------------- 223

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
             WT +I GY+Q G   +AL +F +M+     P+  +I SV+S+CA L +   G  +H  
Sbjct: 224 --WTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 281

Query: 348 --KAVVL-------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMI 396
             K  +L       G D+DL+V +ALIDMY KC     A ++F+ +P   RNVV+W  MI
Sbjct: 282 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341

Query: 397 NGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
            G+AQ G   +AL L+ +++ E   + P+++T   +L AC H      G+     +   H
Sbjct: 342 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 401

Query: 455 GITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               S    A C+IN+  +  DVD A  +  S+  K +++ W+++++   M G
Sbjct: 402 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 453



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 199/434 (45%), Gaps = 60/434 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
            F+ N L+  YAK G +  A  +F+ M  +D++SWNA+++ +++SG+ +    LF  M  
Sbjct: 155 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 214

Query: 117 ---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
              P+ D V++   IAG++ +G S EAL VF +M      P   T +S L+ACA L    
Sbjct: 215 ENIPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFS 273

Query: 174 RGKQIHGK-------IVVGNLGG---NVFVRNALTDMYAKGGEIDKARWLFD--RMNNRN 221
           +G +IH          +  + GG   ++ V NAL DMY+K      AR +FD   +  RN
Sbjct: 274 QGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 333

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACF----------- 268
           +V+W +MI G+ + G     + LF EM  +  G+ P+  T+S IL AC            
Sbjct: 334 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 393

Query: 269 --------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                     + G +D A  +F  + +K  + WT+M+ GY  +G
Sbjct: 394 HAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 453

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVS 361
           +  +AL +F++M      PD  +   V+ +C+    +  G       +   G+       
Sbjct: 454 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 513

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +  ID+  + G  D AW     MP     V W ++++    +     A    +KL++ N 
Sbjct: 514 AYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 573

Query: 421 KPD-SFTFVSVLSA 433
           + D S+T +S + A
Sbjct: 574 ENDGSYTLISNIYA 587



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 114/217 (52%), Gaps = 15/217 (6%)

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK---DNVCWTTMI 295
           +C   F  +         V + N L A + + G +++A  +F  I ++   D + W +++
Sbjct: 27  RCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIV 86

Query: 296 VGYTQNGKEEDALILFNEML------SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
             + ++     AL LF++M         + R D  SI +++ +C  L ++   + VHG A
Sbjct: 87  SAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNA 146

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G   D+ V +ALID Y KCG+ ++A  VFNMM  ++VVSWN+M+ GY+Q+G    A 
Sbjct: 147 IRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAF 206

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            L+  + +EN+  D  T+ +V+     A   +RG +H
Sbjct: 207 ELFKNMRKENIPLDMVTWTAVI-----AGYSQRGCSH 238



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 9/130 (6%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML    R D F++  V+ +C +L S   G   HG     G + ++ + +AL+ MY +CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 374 TDDAWTVFNMMPTR---NVVSWNSMINGYAQNGQDLEALALYDKLL------QENLKPDS 424
            ++A  +F+ +  R   +V+SWNS+++ + ++     AL L+ K+         N + D 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 425 FTFVSVLSAC 434
            + V++L AC
Sbjct: 121 ISIVNILPAC 130



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 41/274 (14%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A      + +++ C  +  + + K++ ++ +  + Y+ +  F+ N L++ Y+K G + 
Sbjct: 366 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 425

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            AR +FD M  +  ISW ++++                               G+   G 
Sbjct: 426 TARHVFDSMSQKSAISWTSMMT-------------------------------GYGMHGR 454

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRN 195
             EAL +F +M+K  F P D T +  L AC+    + +G      +     L        
Sbjct: 455 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 514

Query: 196 ALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLG 252
              D+ A+ G +DKA + + D       V W  ++S    +      ++L +    +L+ 
Sbjct: 515 YAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN----VELAEHALNKLVE 570

Query: 253 LNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKE 285
           +N +      ++   + T GR  D  R+ H++K+
Sbjct: 571 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 604


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 340/607 (56%), Gaps = 41/607 (6%)

Query: 128 IAGFANKGFSREALQVFSRM---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           I+GF       ++++VF  M      RF+ T  T ++ L A A+L +L+ G QI    + 
Sbjct: 2   ISGFVKNSCFEDSIRVFGDMVLGNGPRFDLT--TVIAVLPAVAELQELKLGMQILCLAIK 59

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                +V +   L  +++K GE++ AR LF  +  ++L+S N MISG+  NG+ +  + L
Sbjct: 60  CGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 245 FQEM----------QLLGLNP------DEVTVSNILGACFQTG----------------R 272
           F+E+           ++GL P           + I G C + G                R
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCR 179

Query: 273 IDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
           +++   A +LF    EK    W  MI G TQNG  + A+ LF  M   +V P+  +++S+
Sbjct: 180 LNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSI 239

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +S+CA++ +L  G+ VH        + ++ VS+ALIDMY KCG    A  +F++MP +N 
Sbjct: 240 LSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNE 299

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           V+WN+MI+GY  +G   EAL L+  +L  ++KP   TF+SVL AC HA L + G   F +
Sbjct: 300 VTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHT 359

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +    G  P  +HYACM+++LGR+  + KA++ IK++P +P   +W  LL  C +  D  
Sbjct: 360 MVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTN 419

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
              +A+  LFEL+P N G Y+++SN+Y+   ++   AS+R   K K + K    + IEI 
Sbjct: 420 LAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIG 479

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
              H F S D++HP+++ IY EL KL  K+ EAGF   T  VLHD +EEEK  ++  HSE
Sbjct: 480 QVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSE 539

Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
           KLA+A+ LI    G   IRI+KN+RVC DCH + KF S I  R I++RD+NRFHHF  G 
Sbjct: 540 KLAIAFGLISTEPG-AEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGL 598

Query: 690 CSCKDNW 696
           CSC D W
Sbjct: 599 CSCGDYW 605



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/190 (35%), Positives = 99/190 (52%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL + + R   +   R LFD+   +   S+N  I+G    G +  A+ +F  MQK+   
Sbjct: 171 TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVN 230

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L+ACAQ+  L  G+ +H  I       NV+V  AL DMYAK G I  AR L
Sbjct: 231 PNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVAREL 290

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  +N V+WN MISGY  +G  ++ + LF +M    + P  +T  ++L AC   G +
Sbjct: 291 FDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLV 350

Query: 274 DDAGRLFHVI 283
            +   +FH +
Sbjct: 351 KEGDGIFHTM 360



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 129/299 (43%), Gaps = 37/299 (12%)

Query: 294 MIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           MI G+ +N   ED++ +F +M L    R D  ++ +V+ + A+L  L  G  +   A+  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G    + + + LI ++ KCG  + A  +F  +  ++++S N+MI+G+  NG+  +++ L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 413 DKLLQENLKPDSFTFV-----------SVLSACLHADLFERGQNHFDSISAV-------- 453
            +LL    +  S T V           S L  C+H    + G     S+S          
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 454 -----------HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLL 499
                           +L  +  MI+   ++   D A+ L +++      PN +  +++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWEDVASIRSSMKSKN 556
           S CA  G +  GE     L +     +  Y+   L +MYA CG       +   M  KN
Sbjct: 241 SACAQIGALSLGEW-VHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 91/210 (43%), Gaps = 8/210 (3%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L+      T  ++  ++  CT+    + A  L   M  N   PN   +   +L   A+ G
Sbjct: 189 LFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTV-TSILSACAQIG 247

Query: 74  KLF---YARDLFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
            L    +   L        ++    AL+  +A+ GS+   R LFD MP ++ V++N  I+
Sbjct: 248 ALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMIS 307

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           G+   G  +EAL++F  M     +PT  T +S L AC+    ++ G  I    +V + G 
Sbjct: 308 GYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIF-HTMVHDFGF 366

Query: 190 NVFVRN--ALTDMYAKGGEIDKARWLFDRM 217
                +   + D+  + G++ KA      M
Sbjct: 367 EPLAEHYACMVDILGRAGQLKKALEFIKAM 396


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/638 (33%), Positives = 356/638 (55%), Gaps = 37/638 (5%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            NAL+S +A+S  + +   +FD+MP +D++S+N+ I+G  + G + EA+++F RM     E
Sbjct: 449  NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                T +S L ACA+      G+ +HG  V   L G   + NAL DMY+   +      +
Sbjct: 509  LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL--------- 264
            F  M  +N+VSW  MI+ Y + G   K   L QEM L G+ PD   V+++L         
Sbjct: 569  FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESL 628

Query: 265  -------GACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                   G   + G                    +++A  +F  +  KD + W T+I GY
Sbjct: 629  KQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGY 688

Query: 299  TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++N    ++  LF++ML +  +P+  +++ ++ + A ++SL  G+ +H  A+  G  +D 
Sbjct: 689  SRNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDS 747

Query: 359  LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              S+AL+DMY KCG    A  +F+ +  +N++SW  MI GY  +G   +A+AL++++   
Sbjct: 748  YTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGS 807

Query: 419  NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             ++PD+ +F ++L AC H+ L   G   F+++   + I P L HY C+++LL  + ++ +
Sbjct: 808  GVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKE 867

Query: 479  AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
            A + I+S+P +P+S IW +LL  C +  D+K  E  A  +F+LEP N G Y++L+N+YA 
Sbjct: 868  AFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAE 927

Query: 539  CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              RWE V  +++ +  + +++    SWIE+  KVH F++++R HPE   I E L  + ++
Sbjct: 928  AERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARR 987

Query: 599  LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
            ++E G  P  K  L    +    +++C HS KLA+ + ++  P G  PIR+ KN +VC  
Sbjct: 988  MREEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEG-RPIRVTKNSKVCSH 1046

Query: 659  CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            CH   KF S +  R IILRDS+RFHHF GG CSC+ ++
Sbjct: 1047 CHEAAKFISKMCNREIILRDSSRFHHFEGGRCSCRGHF 1084



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 227/523 (43%), Gaps = 93/523 (17%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           L  A+  L S G      +Y  +V  C     +E A+R  + +         + L  RL+
Sbjct: 79  LAAALRLLGSDGGVGVR-SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLV 137

Query: 67  HFYAKSGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
             Y K G L  AR +FD+MP R  D+  W +L+SA+A++G  Q                 
Sbjct: 138 LAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQ----------------- 180

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         E + +F +MQ     P  +     L   A L  +  G+ IHG +  
Sbjct: 181 --------------EGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEK 226

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             LG    V NAL  +Y++ G ++ A  +FD M+ R+ +SWN  ISGY  NG   + +DL
Sbjct: 227 LGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDL 286

Query: 245 FQEMQLLGLNPDEVTVSNILGAC------------------------------------- 267
           F +M   G     VTV ++L AC                                     
Sbjct: 287 FSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALG 346

Query: 268 -------FQTGRIDDAGRLFHVIKEKDNV-CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                   + G +  A R+F  +  K NV  W  ++ GY +  + E++L+LF +M    +
Sbjct: 347 SKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGI 406

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD+ ++S ++     L+    G V HG  V LG      V +ALI  Y K  + D+A  
Sbjct: 407 TPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVL 466

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF+ MP ++ +SWNS+I+G   NG + EA+ L+ ++  +  + DS T +SVL AC  +  
Sbjct: 467 VFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHY 526

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  G+        VHG       Y+    L+G +S  +  +D+
Sbjct: 527 WFVGR-------VVHG-------YSVKTGLIGETSLANALLDM 555



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 134/458 (29%), Positives = 224/458 (48%), Gaps = 51/458 (11%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA-KSGKLFYARDLFDK 84
           ++++  + T ++ V +   L +  +L F       L  +++H Y+ KSG L+   DL   
Sbjct: 287 FSKMWSEGTEISSVTVLSVLPACAELGFE------LVGKVVHGYSMKSGLLW---DLESV 337

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS-YNTAIAGFANKGFSREALQV 143
               D    + L+  + + G +   R +FD MP + +V  +N  + G+A      E+L +
Sbjct: 338 QSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLL 397

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRR-GKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           F +M +    P ++  +S L  C   L   R G   HG +V    G    V NAL   YA
Sbjct: 398 FEQMHELGITPDEHA-LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYA 456

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K   ID A  +FDRM +++ +SWN +ISG   NG   + I+LF  M + G   D  T+ +
Sbjct: 457 KSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLS 516

Query: 263 ILGAC----------------FQTGRIDDAG-------------------RLFHVIKEKD 287
           +L AC                 +TG I +                     ++F  + +K+
Sbjct: 517 VLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKN 576

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            V WT MI  YT+ G  +    L  EM+ + ++PD F+++SV+   A   SL  G+ VHG
Sbjct: 577 VVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHG 636

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            A+  G++  L V++AL++MY  C   ++A  VF+ +  ++++SWN++I GY++N    E
Sbjct: 637 YAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANE 696

Query: 408 ALALY-DKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           + +L+ D LLQ   KP++ T   +L A       ERG+
Sbjct: 697 SFSLFSDMLLQ--FKPNTVTMTCILPAVASISSLERGR 732



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/397 (29%), Positives = 200/397 (50%), Gaps = 46/397 (11%)

Query: 81  LFDKMPLRDIIS-WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
           L +K+ L +  +  NAL++ ++R G ++D   +FD M  RD++S+N+ I+G+ + G+   
Sbjct: 223 LLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDR 282

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL---------GGN 190
           A+ +FS+M  +  E +  T +S L ACA+L     GK +HG  +   L         G +
Sbjct: 283 AVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGID 342

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
             + + L  MY K G++  AR +FD M ++ N+  WNL++ GY K  + ++ + LF++M 
Sbjct: 343 EALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMH 402

Query: 250 LLGLNPDEVTVSNILG--ACFQTGR---------------------------------ID 274
            LG+ PDE  +S +L    C    R                                 ID
Sbjct: 403 ELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMID 462

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +A  +F  +  +D + W ++I G T NG   +A+ LF  M  +    D  ++ SV+ +CA
Sbjct: 463 NAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACA 522

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           +    + G+VVHG +V  G+  +  +++AL+DMY  C        +F  M  +NVVSW +
Sbjct: 523 RSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTA 582

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           MI  Y + G   +   L  +++ + +KPD F   SVL
Sbjct: 583 MITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVL 619



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 158/319 (49%), Gaps = 16/319 (5%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA-----KSGKLFYAR 79
           ++T ++   TR    +    L   M L+  +P+  F    +LH +A     K GK  +  
Sbjct: 579 SWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDV-FAVTSVLHGFAGDESLKQGKSVHGY 637

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            + + M  + +   NAL+  +    ++++ R +FD +  +D +S+NT I G++   F+ E
Sbjct: 638 AIRNGME-KLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANE 696

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           +  +FS M   +F+P   T    L A A +  L RG++IH   +      + +  NAL D
Sbjct: 697 SFSLFSDMLL-QFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVD 755

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K G +  AR LFDR+  +NL+SW +MI+GY  +G  K  + LF++M+  G+ PD  +
Sbjct: 756 MYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTAS 815

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEM 314
            S IL AC  +G   +  + F+ ++++  +      +T ++   +  G  ++A      M
Sbjct: 816 FSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESM 875

Query: 315 LSEDVRPDKFSISSVVSSC 333
               + PD     S++  C
Sbjct: 876 ---PIEPDSSIWVSLLHGC 891



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 215/498 (43%), Gaps = 104/498 (20%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRNALTDMYAKGGEIDKARWLFD 215
           ++ + +  C +   L   ++ H  +  G  G  G+V  +  L   Y K G++  AR +FD
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKR-LVLAYLKCGDLGGARMVFD 154

Query: 216 RMNNR--NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-------- 265
            M  R  ++  W  ++S Y K G  ++ + LF++MQ  G++PD   VS +L         
Sbjct: 155 EMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSI 214

Query: 266 -----------------ACF----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                            AC           + G ++DA ++F  +  +D + W + I GY
Sbjct: 215 TEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGY 274

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG----------- 347
             NG  + A+ LF++M SE       ++ SV+ +CA+L     G+VVHG           
Sbjct: 275 FSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDL 334

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDL 406
           ++V  G+D+ L   S L+ MY KCG    A  VF+ MP++ NV  WN ++ GYA+  +  
Sbjct: 335 ESVQSGIDEAL--GSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFE 392

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA-- 464
           E+L L++++ +  + PD    +S L  C+      R     D + A HG    L      
Sbjct: 393 ESLLLFEQMHELGITPDEHA-LSCLLKCITCLSCAR-----DGLVA-HGYLVKLGFGTQC 445

Query: 465 ----CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD------------I 508
                +I+   +S+ +D AV +   +PH+ +++ W++++S C   G             +
Sbjct: 446 AVCNALISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVISGCTSNGLNSEAIELFVRMWM 504

Query: 509 KHGEMAARHLFELEPINAGPYI------------------------MLSNMYAACGRWED 544
           +  E+ +  L  + P  A  +                          L +MY+ C  W  
Sbjct: 505 QGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHS 564

Query: 545 VASIRSSMKSKNVKKFAA 562
              I  +M  KNV  + A
Sbjct: 565 TNQIFRNMAQKNVVSWTA 582



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 173/422 (40%), Gaps = 111/422 (26%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L N LL  Y+          +F  M  ++++SW A+++++ R+G       LFDK   
Sbjct: 546 TSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG-------LFDK--- 595

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                    +AG            +   M  D  +P  +   S L+  A    L++GK +
Sbjct: 596 ---------VAG------------LLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSV 634

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG  +   +   + V NAL +MY     +++AR +FD + N++++SWN +I GY +N   
Sbjct: 635 HGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFA 694

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGA----------------CFQTGRIDD------- 275
            +   LF +M LL   P+ VT++ IL A                  + G ++D       
Sbjct: 695 NESFSLFSDM-LLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNAL 753

Query: 276 ------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A  LF  + +K+ + WT MI GY  +G  +DA+ LF +M    V PD 
Sbjct: 754 VDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDT 813

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            S S+++ +C                                   C  G+T + W  FN 
Sbjct: 814 ASFSAILYAC-----------------------------------CHSGLTAEGWKFFNA 838

Query: 384 MPTRNVVS-----WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHA 437
           M     +      +  +++  +  G   EA    + +    ++PDS  +VS+L  C +H 
Sbjct: 839 MRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESM---PIEPDSSIWVSLLHGCRIHR 895

Query: 438 DL 439
           D+
Sbjct: 896 DV 897


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 362/698 (51%), Gaps = 96/698 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRM--- 147
           NAL++ ++R GS+++   +FD++  R   D +S+N+ ++       +  AL +FS+M   
Sbjct: 156 NALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLI 215

Query: 148 --QKDRFEPTDYTH-VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             +K   E +D    V+ L AC  L  + + K++HG  +      +VFV NAL D YAK 
Sbjct: 216 VHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKC 275

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF------------------- 245
           G ++ A  +F+ M  +++VSWN M++GY ++G  K   +LF                   
Sbjct: 276 GLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 335

Query: 246 ----------------QEMQLLGLNPDEVTVSNILGACFQTGRI---------------- 273
                           ++M   G  P+ VT+ ++L AC   G                  
Sbjct: 336 AGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 395

Query: 274 ---DDAG-------------------RLFHV---------IKEKDNVCWTTMIVGYTQNG 302
              +D G                   R F           ++E++ V WT MI G+ Q G
Sbjct: 396 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 455

Query: 303 KEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--L 358
              DAL LF EM+SE   V P+ ++IS ++ +CA LA++  G+ +H   +     D    
Sbjct: 456 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAY 515

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V++ LI+MY KCG  D A  VF+ M  ++ +SW SM+ GY  +G+  EAL ++DK+ + 
Sbjct: 516 FVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 575

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PD  TF+ VL AC H  + ++G ++FDS+SA +G+TP  +HYA  I+LL R   +DK
Sbjct: 576 GFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDK 635

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A   +K +P +P +++W  LLS C +  +++  E A   L E+   N G Y ++SN+YA 
Sbjct: 636 AWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYAT 695

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            GRW+DVA IR  MK   +KK    SW++       F   DR+HP +  IY  L  LI +
Sbjct: 696 AGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDR 755

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P T   LHD  EEEK   +  HSEKLALAY L+    G  PIRI KN+RVCGD
Sbjct: 756 IKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPG-CPIRITKNLRVCGD 814

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH    + S I+   I++RD +RFHHF  G+CSC   W
Sbjct: 815 CHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/473 (29%), Positives = 228/473 (48%), Gaps = 76/473 (16%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQD 108
           N +E N  F+ N L+  Y++ G L  A  +FD++  R   D+ISWN+++SAH +S +   
Sbjct: 146 NGFESNV-FICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWT 204

Query: 109 LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168
              LF KM                        L V  +   +R +     ++  L AC  
Sbjct: 205 ALDLFSKM-----------------------TLIVHEKPTNERSDIISIVNI--LPACGS 239

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
           L  + + K++HG  +      +VFV NAL D YAK G ++ A  +F+ M  +++VSWN M
Sbjct: 240 LKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAM 299

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++GY ++G  K   +LF+ M+   +  D VT                             
Sbjct: 300 VAGYSQSGNFKAAFELFKNMRKENIPLDMVT----------------------------- 330

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
             WT +I GY+Q G   +AL +F +M+     P+  +I SV+S+CA L +   G  +H  
Sbjct: 331 --WTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAY 388

Query: 348 --KAVVL-------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMI 396
             K  +L       G D+DL+V +ALIDMY KC     A ++F+ +P   RNVV+W  MI
Sbjct: 389 SLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 448

Query: 397 NGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
            G+AQ G   +AL L+ +++ E   + P+++T   +L AC H      G+     +   H
Sbjct: 449 GGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH 508

Query: 455 GITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               S    A C+IN+  +  DVD A  +  S+  K +++ W+++++   M G
Sbjct: 509 QYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK-SAISWTSMMTGYGMHG 560



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 199/434 (45%), Gaps = 60/434 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
            F+ N L+  YAK G +  A  +F+ M  +D++SWNA+++ +++SG+ +    LF  M  
Sbjct: 262 VFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRK 321

Query: 117 ---PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
              P+ D V++   IAG++ +G S EAL VF +M      P   T +S L+ACA L    
Sbjct: 322 ENIPL-DMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFS 380

Query: 174 RGKQIHGK-------IVVGNLGG---NVFVRNALTDMYAKGGEIDKARWLFD--RMNNRN 221
           +G +IH          +  + GG   ++ V NAL DMY+K      AR +FD   +  RN
Sbjct: 381 QGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERN 440

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACF----------- 268
           +V+W +MI G+ + G     + LF EM  +  G+ P+  T+S IL AC            
Sbjct: 441 VVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQI 500

Query: 269 --------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                     + G +D A  +F  + +K  + WT+M+ GY  +G
Sbjct: 501 HAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHG 560

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVS 361
           +  +AL +F++M      PD  +   V+ +C+    +  G       +   G+       
Sbjct: 561 RGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHY 620

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +  ID+  + G  D AW     MP     V W ++++    +     A    +KL++ N 
Sbjct: 621 AYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNA 680

Query: 421 KPD-SFTFVSVLSA 433
           + D S+T +S + A
Sbjct: 681 ENDGSYTLISNIYA 694



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 138/290 (47%), Gaps = 49/290 (16%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y   G  D A  + +R+     V WNL+I  ++K G+    I++   M   G   D  T+
Sbjct: 61  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTL 120

Query: 261 SNILGAC--------------------FQT---------------GRIDDAGRLFHVIKE 285
            ++L AC                    F++               G +++A  +F  I +
Sbjct: 121 PHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQ 180

Query: 286 K---DNVCWTTMIVGYTQNGKEEDALILFNEML------SEDVRPDKFSISSVVSSCAKL 336
           +   D + W +++  + ++     AL LF++M         + R D  SI +++ +C  L
Sbjct: 181 RGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSL 240

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            ++   + VHG A+  G   D+ V +ALID Y KCG+ ++A  VFNMM  ++VVSWN+M+
Sbjct: 241 KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 300

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            GY+Q+G    A  L+  + +EN+  D  T+ +V+     A   +RG +H
Sbjct: 301 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI-----AGYSQRGCSH 345



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 56/274 (20%), Positives = 113/274 (41%), Gaps = 41/274 (14%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A      + +++ C  +  + + K++ ++ +  + Y+ +  F+ N L++ Y+K G + 
Sbjct: 473 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVD 532

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            AR +FD M  +  ISW ++++                               G+   G 
Sbjct: 533 TARHVFDSMSQKSAISWTSMMT-------------------------------GYGMHGR 561

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRN 195
             EAL +F +M+K  F P D T +  L AC+    + +G      +     L        
Sbjct: 562 GSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYA 621

Query: 196 ALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLG 252
              D+ A+ G +DKA + + D       V W  ++S    +      ++L +    +L+ 
Sbjct: 622 YAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSN----VELAEHALNKLVE 677

Query: 253 LNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKE 285
           +N +      ++   + T GR  D  R+ H++K+
Sbjct: 678 MNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 711



 Score = 40.4 bits (93), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + + ++  Y  CG TD A  V   +     V WN +I  + + G+   A+ +  ++L+  
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            + D FT   VL AC     +  G       SA HG+
Sbjct: 113 TRLDHFTLPHVLKACGELPSYRCG-------SAFHGL 142


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/560 (37%), Positives = 319/560 (56%), Gaps = 38/560 (6%)

Query: 172 LRRGKQIHGKI--VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           + R  + HG++    G  GG +FV N+L  MYAK G +D A  LFDRM  RN+V+W  ++
Sbjct: 94  IHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVV 153

Query: 230 SGYLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------- 267
           +     +G+ ++ +     M   G+ P+  T S++LGAC                     
Sbjct: 154 AALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSD 213

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       + G +D   R+F  +  +D V W ++I G+ Q+G    A+ LF  M  
Sbjct: 214 VFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKD 273

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
                ++ +++SV+ +C  +  L  G+ VH  A VL  + DL++ +AL+DMYCKCG  +D
Sbjct: 274 AGFSANQGTLTSVLRACTGMVMLEAGRQVH--AHVLKYERDLILHNALLDMYCKCGSLED 331

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  +F+ MP R+V+SW++MI+G AQNG+  EAL ++D +  E + P+  T V VL AC H
Sbjct: 332 AEALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSH 391

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           A L E G  +F S+  + GI P  +H+ CM++LLGR+  +D+AV+ I+ +  +P+++IW 
Sbjct: 392 AGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWR 451

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           TLL  C M         AAR + +LEP + G  ++LSN YA   +W D      +M+ + 
Sbjct: 452 TLLGACRMHKSGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRG 511

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
           +KK    SWIE++  VH F++ D +HP ++ I +EL++LI ++   G+ P T+ VL D  
Sbjct: 512 MKKEPGRSWIELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLA 571

Query: 617 EEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
            E+K   + YHSEK+A+A+  +    G  PIRIMKN+R+CGDCH F K  S   GR II+
Sbjct: 572 IEQKEDLLKYHSEKMAIAFGTMHAVGG-KPIRIMKNLRICGDCHAFAKLVSKSEGRMIII 630

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD  RFHHF  G CSC D W
Sbjct: 631 RDPVRFHHFQDGACSCGDYW 650



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 197/451 (43%), Gaps = 108/451 (23%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           + T+LV  C R       + +  H++           H +L H+   +G           
Sbjct: 74  SLTRLVKLCVRHGTAGDGRLIHRHVEA----------HGQLSHYSGGAGG---------- 113

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK-GFSREALQV 143
                I   N+L+S +A+ G + D   LFD+MP R+ V++ T +A  AN  G   EAL+ 
Sbjct: 114 ----GIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRF 169

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
              M +D   P  YT  S L AC     L     +H   V   L  +VFVR++L D Y K
Sbjct: 170 LVAMWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMK 226

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G++D  R +FD M  R+LV WN +I+G+ ++G     I+LF  M+  G + ++ T++++
Sbjct: 227 LGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSV 286

Query: 264 LGAC-----FQTGR----------------------------IDDAGRLFHVIKEKDNVC 290
           L AC      + GR                            ++DA  LFH + ++D + 
Sbjct: 287 LRACTGMVMLEAGRQVHAHVLKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVIS 346

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+TMI G  QNGK  +AL +F+ M SE V P++ ++  V+ +C+                
Sbjct: 347 WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACS---------------- 390

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAW-------TVFNMMPTRNVVSWNSMINGYAQNG 403
                                G+ +D W        +F + P R     N M++   + G
Sbjct: 391 -------------------HAGLVEDGWYYFRSMKKLFGIQPERE--HHNCMVDLLGRAG 429

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           +  EA+     +   NL+PD+  + ++L AC
Sbjct: 430 KLDEAVEFIRDM---NLEPDAVIWRTLLGAC 457



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 123/282 (43%), Gaps = 50/282 (17%)

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--------GVDDDLLVSSALIDMYCKC 371
           R D  S++ +V  C +  +   G+++H              G    + VS++L+ MY K 
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQ-NGQDLEALALYDKLLQENLKPDSFTFVSV 430
           G+ DDA  +F+ MP RNVV+W +++   A  +G+  EAL     + ++ + P+++TF SV
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 431 LSAC--------LHA---------DLFER---------------GQNHFDSISAVHGITP 458
           L AC        LHA         D+F R               G+  FD +     +T 
Sbjct: 189 LGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEM-----VTR 243

Query: 459 SLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
            L  +  +I    +S D   A++L   +K      N    +++L  C     ++ G    
Sbjct: 244 DLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVH 303

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            H+ + E  +   +  L +MY  CG  ED  ++   M  ++V
Sbjct: 304 AHVLKYER-DLILHNALLDMYCKCGSLEDAEALFHRMPQRDV 344


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/611 (36%), Positives = 349/611 (57%), Gaps = 9/611 (1%)

Query: 90  IISWNALL-SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           II+   LL SA +   ++   R LF   P  D   +NT I G A     + +L  F  M+
Sbjct: 38  IIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMR 97

Query: 149 KDRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +    P D ++    L A A    L  G Q+H + +V  L  ++FV   L  MY++ G +
Sbjct: 98  RRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFV 157

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A+ +F+ M   N+V+WN +++   + G  K    +F  M    L    V    +L   
Sbjct: 158 AFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNV----MLAGY 213

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            + G ++ A +LF  +  KD+V W+TMIVG+  NG   +A   F E+    +RP++ S++
Sbjct: 214 TKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLT 273

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-T 386
             +S+CA   ++  G+++HG     G    + V++AL+D Y KCG    A  VF  MP  
Sbjct: 274 GALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEK 333

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R++VSW SMI G A +G   EA+ L+ ++ +  ++PD   F+S+L AC HA L E+G  +
Sbjct: 334 RSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEY 393

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           F  +  ++ I P+++HY CM++L GR+  +DKA + I  +P  P ++IW TLL  C++ G
Sbjct: 394 FYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHG 453

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           ++K  E     L EL+P N+G +++LSN+YA  G+W+DVA++R SM  + + K   +S I
Sbjct: 454 NVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMI 513

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSIC 625
           E+D  ++ FV+ +  +  TE  YE+L +++ KL+ E  + P    VLHD ++EEK  S+ 
Sbjct: 514 EVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVS 573

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+A+ + +   G + IRI+KN+RVC DCH  MK  S + G  I++RD +RFH F
Sbjct: 574 RHSEKLAVAFGIARLCKG-SIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSF 632

Query: 686 VGGNCSCKDNW 696
             G+CSC+D W
Sbjct: 633 KTGSCSCRDYW 643



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 91/264 (34%), Positives = 143/264 (54%), Gaps = 6/264 (2%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           T LV   +    V  AK++   M    +EPN     N ++    + G +  A  +F++MP
Sbjct: 145 TTLVSMYSECGFVAFAKKVFEEM----FEPNVV-AWNAVVTACFRCGDVKGADMMFNRMP 199

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            R++ SWN +L+ + ++G ++  R LF +MP++D VS++T I GFA+ GF  EA   F  
Sbjct: 200 FRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRE 259

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +Q+    P + +   AL+ACA    +  GK +HG I        V V NAL D Y+K G 
Sbjct: 260 LQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGN 319

Query: 207 IDKARWLFDRM-NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           +  AR +F+RM   R++VSW  MI+G   +G  ++ I LF EM+  G+ PD +   +IL 
Sbjct: 320 VGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILY 379

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNV 289
           AC   G I+     F+ +K+  N+
Sbjct: 380 ACSHAGLIEKGYEYFYKMKDIYNI 403


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 319/571 (55%), Gaps = 37/571 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           S + ACA+   L   + IH  +      G+VF+ N+L  +Y K G +  AR +FD M  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---------- 270
           ++ SW  +I+GY +N  P + + L   M      P+  T +++L A   +          
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 271 -------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                    GR+D A  +F  ++ K+ V W  +I G+ + G  E
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
             L++F EM         F+ SSV S+ A + +L  G+ VH   +  G      V + ++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY K G   DA  VF+ +  ++VV+WNSM+  +AQ G   EA+  ++++ +  +  +  
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+S+L+AC H  L + G+ +FD +   + + P +DHY  +++LLGR+  ++ A+  I  
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP + +W  LL  C M  + K G+ AA H+FEL+P + GP ++L N+YA+ G+W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R  MK+  VKK  A SW+EI+N VH FV+ D THP +E IY++  ++  ++++AG+ 
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           PNT  VL    E+E+   + YHSEK+ALA+ LI  P G T IRIMKNIR+CGDCH   ++
Sbjct: 548 PNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT-IRIMKNIRICGDCHSAFRY 606

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S +  R I++RD+NRFHHF  G+CSC D W
Sbjct: 607 ISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 187/427 (43%), Gaps = 68/427 (15%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           +R  +D++ +R  AAT   Y  L+  C R   ++ A+ + +H+  + +   + FL N L+
Sbjct: 48  IRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFA-GSVFLDNSLI 106

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           H Y K G                               +V D R +FD MP RD  S+ +
Sbjct: 107 HLYCKCG-------------------------------AVADARRVFDGMPARDMCSWTS 135

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            IAG+A      EAL +   M + RF+P  +T  S L A         G+QIH   V  +
Sbjct: 136 LIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYD 195

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +V+V +AL DMYA+ G +D A  +FD++ ++N VSWN +I+G+ + G  +  + +F 
Sbjct: 196 WHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFA 255

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRID-------------------------------- 274
           EMQ  G      T S++  A    G ++                                
Sbjct: 256 EMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 275 ---DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
              DA ++F  + +KD V W +M+  + Q G   +A+  F EM    V  ++ +  S+++
Sbjct: 316 SMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +C+    +  G+          ++ ++     ++D+  + G+ +DA      MP +   +
Sbjct: 376 ACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAA 435

Query: 392 -WNSMIN 397
            W +++ 
Sbjct: 436 VWGALLG 442



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 157/305 (51%), Gaps = 8/305 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR G +    A+FD++  ++ VS+N  IAGFA KG     L +F+ MQ
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ FE T +T+ S  +A A +  L +GK +H  ++      + FV N + DMYAK G + 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDR++ +++V+WN M++ + + G  ++ +  F+EM+  G++ +++T  +IL AC 
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 269 QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +  + F ++K    E +   + T++    + G   DAL+   +M    ++P   
Sbjct: 379 HGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM---PMKPTAA 435

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++ SC    +   GQ        L   DD      L ++Y   G  D A  V  MM
Sbjct: 436 VWGALLGSCRMHKNAKIGQFAADHVFELD-PDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 385 PTRNV 389
               V
Sbjct: 495 KATGV 499


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/630 (34%), Positives = 350/630 (55%), Gaps = 47/630 (7%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSV---QDLRALFDKMPIRDSVSYNTA 127
           + G L  A + F    L+   ++N LL+ +A++  +    D R LFD +P  D+VSYNT 
Sbjct: 24  RRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTL 83

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           ++     G    A +VFS M      P                                 
Sbjct: 84  LSCHFACGDIDGARRVFSTM------PVK------------------------------- 106

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             +V   N +    +K G  ++A  +F  M  RN VSWN M++    +G      DLF+ 
Sbjct: 107 --DVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRN 164

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                   D +  + ++     TG +  A   F  +  ++ V W  ++ GY +N + +DA
Sbjct: 165 APE---KTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDA 221

Query: 308 LILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           L +F  M+ +  V+P+  ++SSV+  C+ L++L  G+ VH   + L +  ++ V ++L+ 
Sbjct: 222 LRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLS 281

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MYCKCG  +DA  VF+ M T+++V+WN+MI+GYAQ+G  ++A+ L++K+  E + PD  T
Sbjct: 282 MYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWIT 341

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
            ++VL+AC+H  L + G   F+++   + I P +DHY+CM++LL R+  +++AV++I S+
Sbjct: 342 LLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM 401

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +P+   + TLL+ C +  +++  E AAR L E +P NAG Y+ L+N+YA   +W DV+
Sbjct: 402 PFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVS 461

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            +R  MK   V K   YSW+EI    H+F S DR HP+  +I+++L +L   ++  G+ P
Sbjct: 462 RVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVP 521

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
           +    LHD ++  K + +  HSEKLA+A+ LI    G+T +RI KN+R+CGDCH   K  
Sbjct: 522 DLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMT-LRIFKNLRICGDCHNAAKLI 580

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S I  R IILRD+ RFHHF GG+CSC D W
Sbjct: 581 SKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 168/368 (45%), Gaps = 47/368 (12%)

Query: 58  TTFLHNRLLHFYAKSGKLFY---ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           TT  +N LL  YAK+  L     AR LFD +P  D +S+N LLS H   G +   R +F 
Sbjct: 42  TTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFS 101

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
            MP++D  S+NT ++G +  G S EA  +F R+   R   +    V+AL AC+   D+  
Sbjct: 102 TMPVKDVTSWNTMVSGLSKNGASEEAAAMF-RIMPVRNAVSWNAMVAAL-ACSG--DMGA 157

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
            + +           +  +  A+   Y   G + KA   F  M  RNLVSWN +++GY+K
Sbjct: 158 AEDLFRNAPEKT---DAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVK 214

Query: 235 NGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-------------------------- 267
           N +    + +F+ M +   + P+  T+S++L  C                          
Sbjct: 215 NSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVT 274

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G ++DA ++F  +  KD V W  MI GY Q+G    A+ LF +M  E 
Sbjct: 275 VGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEG 334

Query: 319 VRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           V PD  ++ +V+++C        G Q          ++  +   S ++D+ C+ G+ + A
Sbjct: 335 VVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERA 394

Query: 378 WTVFNMMP 385
             + + MP
Sbjct: 395 VNMIHSMP 402



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 32/235 (13%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA 111
           N  E     L   ++  Y  +G +  A + F  MP+R+++SWNA+               
Sbjct: 164 NAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAV--------------- 208

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLL 170
                           +AG+     + +AL+VF  M +D   +P   T  S L  C+ L 
Sbjct: 209 ----------------VAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLS 252

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  G+Q+H   +   L  NV V  +L  MY K G+++ A  +FD M+ +++V+WN MIS
Sbjct: 253 ALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMIS 312

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           GY ++G   + I LF++M+  G+ PD +T+  +L AC  TG  D   + F  ++E
Sbjct: 313 GYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQE 367


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/512 (41%), Positives = 326/512 (63%), Gaps = 17/512 (3%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           NV    A+   YAK  +++ AR  FD M  R++VSWN M+SGY +NG  ++ + LF EM 
Sbjct: 104 NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEM- 162

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
            LG   + VT + ++ A  + G +D A +LF+ +  ++ V W +MI GY QNG+   A+ 
Sbjct: 163 -LGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 310 LFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS----SAL 364
           LF EM++ + + PD+ ++ SV+S+C  L +L  G  V    V    ++ + +S    +A+
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV----VRFLTENQIKLSISGHNAM 277

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I MY +CG  +DA  VF  M TR+VVS+N++I+G+A +G  +EA+ L   + +  ++PD 
Sbjct: 278 IFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDR 337

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TF+ VL+AC HA L E G+  F+SI       P++DHYACM++LLGR  +++ A   ++
Sbjct: 338 VTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTME 392

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P +P++ ++ +LL+   +   ++ GE+AA  LFELEP N+G +I+LSN+YA+ GRW+D
Sbjct: 393 RMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKD 452

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604
           V  IR +MK   VKK   +SW+E   K+HKF+  DR+H  ++ IY+ L +L KK++EAG+
Sbjct: 453 VERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGY 512

Query: 605 SPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMK 664
             +   VL D +EEEK + +  HSEKLA+ Y L+    G   IR++KN+RVC DCH  +K
Sbjct: 513 IADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAV-IRVVKNLRVCWDCHTAIK 571

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             S + GR II+RD+NRFH F  G CSCKD W
Sbjct: 572 MISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 153/286 (53%), Gaps = 10/286 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFDK 84
           +T +V    +V D+E A+R    M      P  + +  N +L  YA++G    A  LFD+
Sbjct: 108 WTAMVTGYAKVKDLEAARRYFDCM------PERSVVSWNAMLSGYAQNGLAEEALRLFDE 161

Query: 85  M--PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           M    R+ ++WNA++SA+ R G +   R LF+ MP R+ V++N+ IAG+A  G S  A++
Sbjct: 162 MLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 221

Query: 143 VFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           +F  M    +  P + T VS ++AC  L  L  G  +   +    +  ++   NA+  MY
Sbjct: 222 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMY 281

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           ++ G ++ A+ +F  M  R++VS+N +ISG+  +G   + I+L   M+  G+ PD VT  
Sbjct: 282 SRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFI 341

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
            +L AC   G +++  ++F  IK+     +  M+    + G+ EDA
Sbjct: 342 GVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDA 387



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 185/403 (45%), Gaps = 88/403 (21%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K      A+ LFD MP R++I+W A+++ +A+   ++  R  FD MP R  V
Sbjct: 78  NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 137

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  ++G+A  G + EAL++F  M                                   
Sbjct: 138 SWNAMLSGYAQNGLAEEALRLFDEM----------------------------------- 162

Query: 183 VVGNLGG--NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
               LG   N    NA+   Y + G++D AR LF+ M  RN+V+WN MI+GY +NGQ   
Sbjct: 163 ----LGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAM 218

Query: 241 CIDLFQEM-QLLGLNPDEVTVSNILGAC--------------FQT--------------- 270
            I+LF+EM     L PDEVT+ +++ AC              F T               
Sbjct: 219 AIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMI 278

Query: 271 ------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                 G ++DA R+F  +  +D V + T+I G+  +G   +A+ L + M    + PD+ 
Sbjct: 279 FMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRV 338

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA-LIDMYCKCGVTDDAWTVFNM 383
           +   V+++C+     + G +  G+ V   + D  +   A ++D+  + G  +DA      
Sbjct: 339 TFIGVLTACS-----HAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMER 393

Query: 384 MPTR-NVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDS 424
           MP   +   + S++N    + Q +L  LA  +KL +  L+PD+
Sbjct: 394 MPMEPHAGVYGSLLNASRIHKQVELGELAA-NKLFE--LEPDN 433



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 132/317 (41%), Gaps = 62/317 (19%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+  Y+        ++++ +M    VRPD F    ++ S       +H  V+      LG
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLK-----LG 55

Query: 354 VDDDLLVSSALIDMYCKCGVTDDA----------------------------WTV----- 380
              D  V +A+IDMY +     +A                            WT      
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 381 ------------FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
                       F+ MP R+VVSWN+M++GYAQNG   EAL L+D++L      +S T+ 
Sbjct: 116 AKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEML--GAYRNSVTWN 173

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-- 486
           +++SA +     +  +  F+++   + +T     +  MI    ++     A++L K +  
Sbjct: 174 AMISAYMRVGDLDSARKLFNTMPGRNVVT-----WNSMIAGYAQNGQSAMAIELFKEMIT 228

Query: 487 --PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWE 543
                P+ +   +++S C   G ++ G    R L E +  ++   +  +  MY+ CG  E
Sbjct: 229 AKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSME 288

Query: 544 DVASIRSSMKSKNVKKF 560
           D   +   M +++V  +
Sbjct: 289 DAKRVFQEMATRDVVSY 305


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/546 (39%), Positives = 327/546 (59%), Gaps = 20/546 (3%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   + V+ L ACA +     GK +HG  V      ++FV NAL DMYAK G +D+A  +
Sbjct: 11  PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKV 70

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FDR+  +++VSWN M++GY + G+ +  + LF++M+   +  + V+ S ++ A  Q G  
Sbjct: 71  FDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGL- 129

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVS 331
                           C T  +    Q+G+  DAL LF+ M  +D  V+P+ F+IS  + 
Sbjct: 130 ---------------GCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALI 174

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           +CA+LA+L  G+ +H   +    D   L V++ LIDMY K G  D A  VF+ +  +N V
Sbjct: 175 ACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFV 234

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW S++ GY  +G+  EAL ++D++ +  L+PD  T + VL AC H+ + ++G   F+S+
Sbjct: 235 SWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSM 294

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           S   G+ P  +HYACM++LLGR+  +++A++LI+ +  +P+S++W  LLS C +  +++ 
Sbjct: 295 SKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVEL 354

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           GE AA+ L EL   N G Y +LSN+YA   RW+DVA +RS MK+  ++K    SW++   
Sbjct: 355 GEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKK 414

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
               F   D+THP+++ IYE L  L ++++  G+ P T   LHD  +EEKV  +  HSEK
Sbjct: 415 GTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEK 474

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LALAY ++    G  PIRI KN+RVCGDCH  + + S II   IILRDS+RFHHF  G+C
Sbjct: 475 LALAYGILISAPG-APIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSC 533

Query: 691 SCKDNW 696
           SC   W
Sbjct: 534 SCSGYW 539



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 104/325 (32%), Positives = 171/325 (52%), Gaps = 30/325 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+  YAK G +  A  +FD++  +D++SWNA+++ +++ G  +D   LF+KM   
Sbjct: 49  FVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREE 108

Query: 120 D----SVSYNTAIAGFANKGFSREALQVFSRMQ----KDRFE-------------PTDYT 158
           +     VS++  IA FA +G   E L VF  MQ     D  E             P  +T
Sbjct: 109 NIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFT 168

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNL-GGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
              AL ACA+L  LR G+QIH  I+  +     ++V N L DMYAK G+ID AR++FD +
Sbjct: 169 ISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL 228

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG 277
             +N VSW  +++GY  +G+ K+ +++F EM+ +GL PD VT+  +L AC  +G ID   
Sbjct: 229 KQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGI 288

Query: 278 RLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
             F+ + ++  V      +  M+    + G+  +A+ L   M  E   P      +++S 
Sbjct: 289 EFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQME---PSSIVWVALLSG 345

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDD 357
           C   A++  G+    + + L  ++D
Sbjct: 346 CRIHANVELGEHAAKQLLELNSEND 370



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 116/249 (46%), Gaps = 69/249 (27%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           D+RPD  S+ +V+ +CA + +  HG+ VHG AV  G  +DL V +AL+DMY KCG+ D+A
Sbjct: 8   DMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEA 67

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL----------------- 420
             VF+ +  ++VVSWN+M+NGY+Q G+  +AL L++K+ +EN+                 
Sbjct: 68  SKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQR 127

Query: 421 -----------------------------------KPDSFTFVSVLSACLHADLFERG-- 443
                                              KP+ FT    L AC        G  
Sbjct: 128 GLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQ 187

Query: 444 ------QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
                 +NHFDS          L    C+I++  +S D+D A  +  +L  K N + W++
Sbjct: 188 IHAYILRNHFDS--------AFLYVANCLIDMYAKSGDIDVARFVFDNLKQK-NFVSWTS 238

Query: 498 LLSVCAMKG 506
           L++   M G
Sbjct: 239 LMTGYGMHG 247



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/205 (20%), Positives = 90/205 (43%), Gaps = 35/205 (17%)

Query: 30  VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRD 89
           ++ C R+  + L +++ +++  N ++    ++ N L+  YAKSG +  AR +FD +  ++
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
            +SW +L++                               G+   G  +EAL+VF  M++
Sbjct: 233 FVSWTSLMT-------------------------------GYGMHGRGKEALEVFDEMRR 261

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV--VGNLGGNVFVRNALTDMYAKGGEI 207
              +P   T +  L AC+    + +G +    +    G + G       + D+  + G +
Sbjct: 262 VGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHY-ACMVDLLGRAGRL 320

Query: 208 DKARWLFDRMN-NRNLVSWNLMISG 231
           ++A  L + M    + + W  ++SG
Sbjct: 321 NEAMELIEGMQMEPSSIVWVALLSG 345


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/638 (33%), Positives = 348/638 (54%), Gaps = 36/638 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           + L+ A++    V D   +F+ +  +D+V +   ++ ++       A +VFS+M+    +
Sbjct: 201 SGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCK 260

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   S L A   L  +  GK IHG  +         V  AL DMYAK G+I  AR  
Sbjct: 261 PNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 320

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F+ +   +++  + MIS Y ++ Q ++  +LF  +    + P+E ++S++L AC      
Sbjct: 321 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 380

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         +   +D + ++F  +++ + V W T++VG+
Sbjct: 381 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 440

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +Q+G  E+AL +F EM +  +   + + SSV+ +CA  AS+ H   +H        ++D 
Sbjct: 441 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 500

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           ++ ++LID Y KCG   DA  VF  +  R+++SWN++I+GYA +GQ  +AL L+D++ + 
Sbjct: 501 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 560

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           N++ +  TFV++LS C    L   G + FDS+   HGI PS++HY C++ LLGR+  ++ 
Sbjct: 561 NVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLND 620

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+  I  +P  P++++W  LLS C +  ++  G  +A  + E+EP +   Y++LSNMYAA
Sbjct: 621 ALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAA 680

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G  + VA +R SM++  V+K    SW+EI  ++H F      HP+  +I   L  L  K
Sbjct: 681 AGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLK 740

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
               G+ P+  +VLHD  +E+K + +  HSE+LALAY L+  P G  PIRI+KN+R C D
Sbjct: 741 TSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPG-HPIRILKNLRSCLD 799

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH      S I+ R II+RD NRFHHF  G CSC D W
Sbjct: 800 CHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/379 (28%), Positives = 186/379 (49%), Gaps = 49/379 (12%)

Query: 163 LNACAQLLDLRRGKQIHGKIV----VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           L  C    D R G+ +HG +V    VG L  ++F  N L +MY K G +  AR LFDRM 
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRL--DLFCANVLLNMYGKLGPLASARRLFDRMP 123

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-------------- 264
            RN+VS+  ++  + + G  +    LF+ ++  G   ++  ++ +L              
Sbjct: 124 ERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGG 183

Query: 265 ------------GACFQTGRID---------DAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                        A   +G ID         DA  +F+ I  KD V WT M+  Y++N  
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E+A  +F++M     +P+ F+++SV+ +   L S+  G+ +HG A+    D +  V  A
Sbjct: 244 PENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGA 303

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY KCG   DA   F M+P  +V+  + MI+ YAQ+ Q+ +A  L+ +L++ ++ P+
Sbjct: 304 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 363

Query: 424 SFTFVSVLSAC---LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            ++  SVL AC   +  D  ++  NH   I    G    L     +++   + +D+D ++
Sbjct: 364 EYSLSSVLQACTNMVQLDFGKQIHNHAIKI----GHESDLFVGNALMDFYAKCNDMDSSL 419

Query: 481 DLIKSLPHKPNSLIWSTLL 499
            +  SL    N + W+T++
Sbjct: 420 KIFSSL-RDANEVSWNTIV 437



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 164/365 (44%), Gaps = 24/365 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL+  +A+   +     +F  +   + VS+NT + GF+  G   EAL VF  MQ
Sbjct: 398 DLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQ 457

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             +   T  T+ S L ACA    +R   QIH  I       +  + N+L D YAK G I 
Sbjct: 458 AAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIR 517

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  +  R+++SWN +ISGY  +GQ    ++LF  M    +  +++T   +L  C 
Sbjct: 518 DALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCS 577

Query: 269 QTGRID------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
            TG ++      D+ R+ H IK      +T ++    + G+  DAL    ++ S    P 
Sbjct: 578 STGLVNHGLSLFDSMRIDHGIKPSMEH-YTCIVRLLGRAGRLNDALQFIGDIPSA---PS 633

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                +++SSC    ++  G+    K + +   D+      L +MY   G  D    +  
Sbjct: 634 AMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE-TTYVLLSNMYAAAGSLDQVALLRK 692

Query: 383 MMPTRNV-------VSWNSM---INGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVL 431
            M  RN+       +SW  +   I+ ++    D   + + + +L+  NLK     ++  +
Sbjct: 693 SM--RNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDI 750

Query: 432 SACLH 436
           +  LH
Sbjct: 751 NVVLH 755



 Score = 85.9 bits (211), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 138/325 (42%), Gaps = 40/325 (12%)

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           + G +  A RLF  + E++ V + T++  + Q G  E A  LF  +  E    ++F +++
Sbjct: 108 KLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTT 167

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++     + +      VH  A  LG D +  V S LID Y  C +  DA  VFN +  ++
Sbjct: 168 MLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKD 227

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA--CLHADLFERGQNH 446
            V W +M++ Y++N     A  ++ K+     KP+ F   SVL A  CL + +  +G  H
Sbjct: 228 AVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGI-H 286

Query: 447 FDSISAVHGITPS-----LDHYA-C-----------------------MINLLGRSSDVD 477
             +I  ++   P      LD YA C                       MI+   +S+  +
Sbjct: 287 GCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNE 346

Query: 478 KAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL---EPINAGPYIM 531
           +A +L   L      PN    S++L  C     +  G+    H  ++     +  G  +M
Sbjct: 347 QAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALM 406

Query: 532 LSNMYAACGRWEDVASIRSSMKSKN 556
             + YA C   +    I SS++  N
Sbjct: 407 --DFYAKCNDMDSSLKIFSSLRDAN 429



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 7/136 (5%)

Query: 310 LFNEMLSEDVRP-----DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSS 362
           L +E+ S  + P     D F+ +  +  C        G+ VHG  V  G     DL  ++
Sbjct: 41  LEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCAN 100

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
            L++MY K G    A  +F+ MP RN+VS+ +++  +AQ G    A AL+ +L  E  + 
Sbjct: 101 VLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEV 160

Query: 423 DSFTFVSVLSACLHAD 438
           + F   ++L   +  D
Sbjct: 161 NQFVLTTMLKLAIAMD 176



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%)

Query: 13  TLYSRGQAA----TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +++   QAA    T+  Y+ ++  C     +  A ++   ++ + +  N T + N L+  
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN-NDTVIGNSLIDT 509

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSY 124
           YAK G +  A  +F  +  RDIISWNA++S +A  G   D   LFD+M       + +++
Sbjct: 510 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 569

Query: 125 NTAIAGFANKGFSREALQVFSRMQKD 150
              ++  ++ G     L +F  M+ D
Sbjct: 570 VALLSVCSSTGLVNHGLSLFDSMRID 595


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 353/650 (54%), Gaps = 49/650 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A+ G +     +FD MP R+ VS+   + GF + G +RE L++F  M+     
Sbjct: 43  NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS 102

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T  + L AC      R G QIHG  V     G+  V N+L  MY+KG     AR +
Sbjct: 103 PNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRV 160

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTG- 271
           FD + +RNL +WN MISGY   GQ +  + +F+EMQ      PDE T +++L AC   G 
Sbjct: 161 FDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGA 220

Query: 272 ------------------------------------RIDDAGRLFHVIKEKDNVCWTTMI 295
                                               R+  A ++F  ++ ++ + WTT+I
Sbjct: 221 AREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVI 280

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
           VG+ Q G+ ++A+ LF    S  VR D   +SSVV+  A  A +  G+ VH         
Sbjct: 281 VGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAG 340

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V+++L+DMY KCG+T +A   F  MP RNVVSW +MING  ++G   EA+ L++++
Sbjct: 341 LDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEM 400

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +E ++ D   ++++LSAC H+ L +  + +F  I     + P  +HYACM++LLGR+ +
Sbjct: 401 QEEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 460

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           + +A +LI S+P +P   +W TLLS C +  D+  G      L  ++  N   Y+MLSN+
Sbjct: 461 LREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNI 520

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV-SEDRTHPETEIIYEELSK 594
            A  G W +   IR +M+ K ++K    SW E+D +VH F    D  HP+   I   L +
Sbjct: 521 LAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALRE 580

Query: 595 LIKKLQEA-GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP------- 646
           +  +++E  G+S + +  LHD  EE +V+S+  HSE+LA+   L++   G          
Sbjct: 581 VEARMRERLGYSGDARCALHDVDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEV 640

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+ KN+RVCGDCH F+K  S ++ R +++RD+NRFH F  G CSC+D W
Sbjct: 641 VRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 69/413 (16%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L A A+   LR G Q+H  ++    G +  + N L DMYAK G++  A  +FD M  RN+
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  ++ G+L +G+ ++C+ LF EM+  G +P+E T+S  L AC               
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVCV 130

Query: 268 -----------------FQTGR-IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                            +  GR   DA R+F VI  ++   W +MI GY   G+  D+L+
Sbjct: 131 RTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLL 190

Query: 310 LFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALID 366
           +F EM    D +PD+F+ +S++ +C+ L +   G  VH    V GV    + +++ AL+D
Sbjct: 191 VFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLD 250

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y KC     A  VF+ +  RN + W ++I G+AQ GQ  EA+ L+ +     ++ D   
Sbjct: 251 VYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHV 310

Query: 427 FVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDH----------------------- 462
             SV++      L E+G Q H  +     G+  S+ +                       
Sbjct: 311 LSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMP 370

Query: 463 ------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKG 506
                 +  MIN +G+     +A+DL + +     + + + +  LLS C+  G
Sbjct: 371 ARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSG 423



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 141/344 (40%), Gaps = 48/344 (13%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP-NTTFLHNRLLHFYAKSGKLFYARDL 81
           E  +  L+  C+ +       ++ + M +    P +   L   LL  Y K  +L  A  +
Sbjct: 205 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 264

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD +  R+ I W  ++  HA+ G V                               +EA+
Sbjct: 265 FDGLERRNAIQWTTVIVGHAQEGQV-------------------------------KEAM 293

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F R          +   S +   A    + +GKQ+H        G +V V N+L DMY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G   +A   F  M  RN+VSW  MI+G  K+G  ++ IDLF+EMQ  G+  DEV   
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYL 413

Query: 262 NILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
            +L AC  +G +D+  R F  I        K +   C   ++ G     +E   LI    
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLL-GRAGELREAKELI---- 468

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            LS  + P      +++S+C     +  G+ V    V+L VD D
Sbjct: 469 -LSMPMEPTVGVWQTLLSACRVHKDVAVGREV--GDVLLAVDGD 509



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           I+ ++ + A+ +SL  G  +H   + LG   D ++++ LIDMY KCG    A  VF+ MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            RNVVSW +++ G+  +G+  E L L+ ++      P+ FT  + L AC
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC 115


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/639 (34%), Positives = 355/639 (55%), Gaps = 38/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N LL+ + +     D R +FD+M +RDSV+YNT I G+       E++++F     D+F+
Sbjct: 246 NGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFK 304

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S L AC  L DL   K I+  ++         V+N L D+YAK G++  AR +
Sbjct: 305 PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDV 364

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------------- 259
           F+ M  ++ VSWN +ISGY+++G   + + LF+ M ++    D +T              
Sbjct: 365 FNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADL 424

Query: 260 --------------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                               VSN L   + + G + D+ ++F+ +   D V W T+I   
Sbjct: 425 KFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISAC 484

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            + G     L +  +M    V PD  +    +  CA LA+   G+ +H   +  G + +L
Sbjct: 485 VRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESEL 544

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +ALI+MY KCG  + ++ VF  M  R+VV+W  MI  Y   G+  +AL  +  + + 
Sbjct: 545 QIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKS 604

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + PDS  F++++ AC H+ L E+G   F+ +   + I P ++HYAC+++LL RS  + K
Sbjct: 605 GIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISK 664

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+++P +P++ IW+++L  C   GD++  E  +R + EL P + G  I+ SN YAA
Sbjct: 665 AEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAA 724

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +W+ V+ IR S++ K++KK   YSWIEI  KVH F S D + P++E I++ L  L   
Sbjct: 725 LRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEAIHKSLEILYSL 784

Query: 599 LQEAGFSPNTKLVLHD-TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           + + G+ P+++ V  +  +EEEK + IC HSE+LA+A+ L+    G TP+++MKN+RVC 
Sbjct: 785 MAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPG-TPLQVMKNLRVCS 843

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   K  S I+GR I++RD+NRFH F  G CSCKD W
Sbjct: 844 DCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/432 (28%), Positives = 224/432 (51%), Gaps = 42/432 (9%)

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P ++   +N+ I  F+  G+  +AL+ + ++++ +  P  YT  S + ACA L D   G 
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            ++ +I+      +++V NAL DMY++ G + +AR +FD M  R+LVSWN +ISGY  +G
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHG 186

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTG--------- 271
             ++ ++++ E++   + PD  TVS++L                G   ++G         
Sbjct: 187 YYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNN 246

Query: 272 ----------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                     R  DA R+F  +  +D+V + TMI GY +    E+++ +F E L +  +P
Sbjct: 247 GLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKP 305

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +++SV+ +C  L  L   + ++   +  G   +  V + LID+Y KCG    A  VF
Sbjct: 306 DILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVF 365

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADL- 439
           N M  ++ VSWNS+I+GY Q+G  +EA+ L+  ++    + D  T++ ++S     ADL 
Sbjct: 366 NSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLK 425

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           F +G  H + I +  GI   L     +I++  +  +V  ++ +  S+    +++ W+T++
Sbjct: 426 FGKGL-HSNGIKS--GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSM-GTLDTVTWNTVI 481

Query: 500 SVCAMKGDIKHG 511
           S C   GD   G
Sbjct: 482 SACVRFGDFATG 493



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/276 (26%), Positives = 133/276 (48%), Gaps = 14/276 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   NAL+  +A+ G V D   +F+ M   D+V++NT I+     G     LQV ++M+
Sbjct: 442 DLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMR 501

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K++  P   T +  L  CA L   R GK+IH  ++       + + NAL +MY+K G ++
Sbjct: 502 KNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLE 561

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            +  +F+RM+ R++V+W  MI  Y   G+ +K ++ F +M+  G+ PD V    ++ AC 
Sbjct: 562 SSFRVFERMSRRDVVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACS 621

Query: 269 QTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
            +G ++     F  +K    +        C   ++    +  K E+ +       +  + 
Sbjct: 622 HSGLVEKGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFI------QAMPIE 675

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           PD    +SV+ +C     +   + V  + + L  DD
Sbjct: 676 PDASIWASVLRACRTSGDMETAERVSRRIIELNPDD 711



 Score = 42.7 bits (99), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)

Query: 42  AKRLQSHMD---LNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           AKRL   +    L F   +   + N L+  Y+K G L  +  +F++M  RD+++W  ++ 
Sbjct: 524 AKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIY 583

Query: 99  AHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           A+   G  +     F  M     + DSV +   I   ++ G   + L  F +M+
Sbjct: 584 AYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMK 637


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/711 (31%), Positives = 370/711 (52%), Gaps = 74/711 (10%)

Query: 26  YTQLVLDCT-RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +T ++L  + R  +++  KR+ SH+    YE +   + N ++  Y K G +  A ++FD 
Sbjct: 119 FTSILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVM-NLVVEMYGKCGDVEQAGNVFDS 177

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +   ++ SW  +                               IA +A  G   E L++ 
Sbjct: 178 IQDPNVFSWTII-------------------------------IAAYAQNGHCMEVLRLL 206

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAK 203
           SRM +   +P  YT  + L AC  +  L   K +H   +    L  +  V  AL ++Y K
Sbjct: 207 SRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGK 266

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G +++A  +F +++N+++VSW+ MI+ + ++GQ K  I L   M L G+ P+ VT  N+
Sbjct: 267 CGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNV 326

Query: 264 LGA-----CFQTGR------------------------------IDDAGRLFHVIKEKDN 288
           L A      FQ G+                              ++ A  +F   +E+D 
Sbjct: 327 LEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARSIFESSRERDV 386

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W++MI GY+QN     AL LF EM  + V+P+  +  S + +CA + +L  G  +H +
Sbjct: 387 VSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHER 446

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
              LG+D D+ V++AL+++Y KCG  ++A  VF  M  +N+++W S+   Y QNG    +
Sbjct: 447 VRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSRS 506

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L   +  + +KPD   FV++L +C +A    +G ++++ ++   GI P+++H  CM++
Sbjct: 507 LKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMVD 566

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +LGR+  ++ A  LI ++  + +SL W  LL+ C    D      AA  +F+LEP NA P
Sbjct: 567 ILGRAGKLEAAEQLINTMKFE-SSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNATP 625

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI- 587
           Y++LS+++ A G WE     R  M  + V++    S IEI ++VH+FV+     P   + 
Sbjct: 626 YVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIGDRVHEFVAASDVLPHHLVG 685

Query: 588 -IYEELSKLIKKLQEAGFSPN-TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
            I+  L KL +++Q AG+ P+ T + L D +E  K  ++ YHSE LAL   +I  P G T
Sbjct: 686 EIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPYHSEMLALGLGIISTPAG-T 744

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           P+RI KN+R+C DCH+  KF S ++ R I +RD  R HHF  G CSC D W
Sbjct: 745 PLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFENGVCSCGDYW 795



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 233/503 (46%), Gaps = 71/503 (14%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P+ + L N ++  Y + G    A D+FD+M  +++++W +L+SA   +G   D   LF K
Sbjct: 47  PDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRK 106

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           M                          + S +  DR   T       L    +  +L  G
Sbjct: 107 M--------------------------LLSGVSPDRITFTSIL----LKWSGRERNLDEG 136

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K++H  I+     G+  V N + +MY K G++++A  +FD + + N+ SW ++I+ Y +N
Sbjct: 137 KRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQN 196

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL---------------- 279
           G   + + L   M   G+ PD  T + +LGAC   G +++A  L                
Sbjct: 197 GHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAV 256

Query: 280 --------------------FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                               F  I  KD V W++MI  + Q+G+ + A+ L   M  E V
Sbjct: 257 GTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGV 316

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           RP+  +  +V+ +   L +  +G+ +H + V  G  DD+ ++SAL+ MYC  G  + A +
Sbjct: 317 RPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVETARS 376

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F     R+VVSW+SMI GY+QN     AL+L+ ++  + ++P+S TFVS + AC     
Sbjct: 377 IFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAGVGA 436

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             RG    + +  + G+   +     ++NL G+   +++A  +   +  K N L W+   
Sbjct: 437 LRRGTQLHERVRCL-GLDKDVPVATALVNLYGKCGRLEEAEAVFLGMK-KKNLLTWT--- 491

Query: 500 SVCAMKGDIKHGEMAARHLFELE 522
           S+    G   HG  + + L  +E
Sbjct: 492 SIAMAYGQNGHGSRSLKLLHGME 514



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 217/474 (45%), Gaps = 82/474 (17%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNL-----GGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           L AC+ L  L  GK++HG ++  +L          + N +  MY + G  D A  +FDRM
Sbjct: 17  LTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRM 76

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL------------- 264
            ++N+V+W  +IS +   G     + LF++M L G++PD +T ++IL             
Sbjct: 77  KDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEG 136

Query: 265 --------------------------GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                     G C   G ++ AG +F  I++ +   WT +I  Y
Sbjct: 137 KRVHSHIMQTGYEGDRMVMNLVVEMYGKC---GDVEQAGNVFDSIQDPNVFSWTIIIAAY 193

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDD 357
            QNG   + L L + M    V+PD ++ ++V+ +C  + +L   +++H   +   G+D D
Sbjct: 194 AQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRD 253

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +ALI++Y KCG  ++A+ VF  +  +++VSW+SMI  +AQ+GQ   A+ L   +  
Sbjct: 254 AAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDL 313

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHG----ITPSLDHYAC------- 465
           E ++P++ TFV+VL A      F+ G+  H   + A +     +T +L    C       
Sbjct: 314 EGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGWVET 373

Query: 466 ------------------MINLLGRSSDVDKAVDLIKSLP---HKPNSLIWSTLLSVCAM 504
                             MI    ++    +A+ L + +     +PNS+ + + +  CA 
Sbjct: 374 ARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDACAG 433

Query: 505 KGDIKHGEMAARHLFELEPINAGPY-IMLSNMYAACGRWEDVASIRSSMKSKNV 557
            G ++ G      +  L      P    L N+Y  CGR E+  ++   MK KN+
Sbjct: 434 VGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNL 487



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 106/202 (52%), Gaps = 14/202 (6%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV-----DDDLLVSSALIDMY 368
           M + +++ +  + ++++++C+ L +L  G+ VHG  +   +      D+ L+ + +I MY
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            +CG TD A  VF+ M  +NVV+W S+I+ +   G   +A+ L+ K+L   + PD  TF 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL----GRSSDVDKAVDLIK 484
           S+L   L     ER  +    + + H +    +    ++NL+    G+  DV++A ++  
Sbjct: 121 SIL---LKWSGRERNLDEGKRVHS-HIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFD 176

Query: 485 SLPHKPNSLIWSTLLSVCAMKG 506
           S+   PN   W+ +++  A  G
Sbjct: 177 SI-QDPNVFSWTIIIAAYAQNG 197


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/563 (37%), Positives = 335/563 (59%), Gaps = 43/563 (7%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           + V+ RM+     P  +T    L +    + L  G++ H +I++  L  + FVR +L +M
Sbjct: 46  ISVYFRMRHHCVSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNM 105

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y+  G++  A  +FD   +++L +WN +++ Y K                          
Sbjct: 106 YSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAK-------------------------- 139

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-- 318
                     G I+ A +LF  + E++ + W+ +I GY   GK ++AL LF EM      
Sbjct: 140 ---------AGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPN 190

Query: 319 ---VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
              V P+KF++S+V+S+C +L +L  G+ VH      GV+ D+++ +ALIDMY KCG  +
Sbjct: 191 EVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLE 250

Query: 376 DAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSA 433
            A  VF+ + ++ +V ++++MI   A  G   E   ++ ++    N+ P+S TFV +L A
Sbjct: 251 RAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGA 310

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C+H  L  +G+++F  ++   GITPS+ HY CM++L GRS  + +A   I S+P +P+ L
Sbjct: 311 CVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVL 370

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IW +LLS   M GDIK  E A + L EL+P+N+G Y++LSN+YA  GRW +V  IR  M+
Sbjct: 371 IWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEME 430

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            K +KK    S++E++  VH+FV  D +  E+E IY  L +++++L+EAG+  +TK VL 
Sbjct: 431 VKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLL 490

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +E++K  ++ YHSEKLA+A+CL+K   G TP+RI+KN+R+CGDCHL MK  S +  R 
Sbjct: 491 DLEEKDKEMALSYHSEKLAIAFCLMKTRPG-TPVRIIKNLRICGDCHLVMKMISKLFSRE 549

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I++RD NRFHHF  G+CSC+D W
Sbjct: 550 IVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 152/294 (51%), Gaps = 19/294 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+   LL+ Y+  G L  A  +FD+   +D+ +WN++++A+A++G +   R LFD+MP R
Sbjct: 97  FVRTSLLNMYSSCGDLSSALRIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPER 156

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDR-----FEPTDYTHVSALNACAQLLDLRR 174
           + +S++  I G+   G  +EAL +F  MQ  +       P  +T  + L+AC +L  L +
Sbjct: 157 NVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQ 216

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV-SWNLMISGYL 233
           GK +H  I    +  ++ +  AL DMYAK G +++A+ +FD + ++  V +++ MI    
Sbjct: 217 GKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLA 276

Query: 234 KNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-- 290
             G   +C  +F EM     +NP+ VT   ILGAC   G I+     F ++ E+  +   
Sbjct: 277 MYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPS 336

Query: 291 ---WTTMIVGYTQNG--KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
              +  M+  Y ++G  KE ++ I      S  + PD     S++S    L  +
Sbjct: 337 IQHYGCMVDLYGRSGLIKEAESFI-----ASMPMEPDVLIWGSLLSGSRMLGDI 385



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 131/305 (42%), Gaps = 56/305 (18%)

Query: 273 IDDAGRLFHVIKEK-DNVCWTTMIVGYTQN---GKEEDALILFNEMLSEDVRPDKFSISS 328
           I  A  +FH+   K ++  W  +I     N    +    + ++  M    V PD  +   
Sbjct: 7   ISYANPIFHIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFPF 66

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++ S      L  GQ  H + ++ G+D D  V ++L++MY  CG    A  +F+   +++
Sbjct: 67  LLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFDESVSKD 126

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           + +WNS++N YA+ G    A  L+D++ + N          V+S                
Sbjct: 127 LPAWNSVVNAYAKAGLINHARKLFDEMPERN----------VIS---------------- 160

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL----PHK----PNSLIWSTLLS 500
                         ++C+IN         +A+DL + +    P++    PN    ST+LS
Sbjct: 161 --------------WSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLS 206

Query: 501 VCAMKGDIKHGEMAARHL--FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS-KNV 557
            C   G ++ G+    ++  + +E I+      L +MYA CG  E    +  ++ S K+V
Sbjct: 207 ACGRLGALEQGKWVHSYIDKYGVE-IDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDV 265

Query: 558 KKFAA 562
           K ++A
Sbjct: 266 KAYSA 270


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/606 (35%), Positives = 343/606 (56%), Gaps = 10/606 (1%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+S+ +   S+    A+F+    ++  ++N  I G         A+  F  M +   +P 
Sbjct: 119 LISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPD 178

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             T+   L + A L     G  IH  I+   +  + FVR +L DMY K  ++  A  +FD
Sbjct: 179 RLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFD 238

Query: 216 RMNNR-----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
               R     + + WN++I G  K G  KK + LF+ M       + V+ S ++    + 
Sbjct: 239 ESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMP----KKENVSWSTLIDGFAKN 294

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +D A  LF  + EK+ V WTTM+ G+++NG  E AL +F++ML E VRP+ F+I S +
Sbjct: 295 GDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSAL 354

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           S+CAK+  L  G  +H      G+     + +AL+DMY KCG  + A  VF     +++ 
Sbjct: 355 SACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIR 414

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           +W  MI G+A +G   +A+A + +++   +KPD   F+++L+AC+H+   + G N FDS+
Sbjct: 415 TWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSM 474

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              + I PS+ HY  ++++LGRS  + +A+  I+ +P  P+ +IW  L   C      K 
Sbjct: 475 RLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKM 534

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
            + A   L +LEP + G YI LSN YAA G+WED   +R  M+++ V K + +S IE++ 
Sbjct: 535 AKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEG 594

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
           +VH+FVS D  H +++ I  +L +++    + G+ P T+ VLH+ ++EEK   +  H EK
Sbjct: 595 QVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEK 654

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LALA+ LI    G+T IRI+KN++VCGDCH  MK+AS I  R I+LRD  RFHHF  G+C
Sbjct: 655 LALAFALICTSPGMT-IRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSC 713

Query: 691 SCKDNW 696
           SC+D+W
Sbjct: 714 SCRDHW 719



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 176/348 (50%), Gaps = 21/348 (6%)

Query: 53  FYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRAL 112
           F   ++  L N L+    K+G +  A  LF  MP ++ +SW+ L+   A++G +     L
Sbjct: 244 FDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDRAMEL 303

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172
           FD+MP ++ VS+ T + GF+  G S +AL +FS+M ++   P  +T VSAL+ACA++  L
Sbjct: 304 FDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGL 363

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
             G +IH  I    L     +  AL DMYAK G I+ A  +F     +++ +W +MI G+
Sbjct: 364 EAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGW 423

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------DAGRLFHVIKEK 286
             +G  ++ I  F++M   G+ PDEV    +L AC  +G++D      D+ RL + I E 
Sbjct: 424 AIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCI-EP 482

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC-----AKLASLYH 341
               +T ++    ++G+ ++AL     M    + PD     ++  +C      K+A    
Sbjct: 483 SMKHYTLIVDMLGRSGQLKEALRFIERM---PMNPDFVIWGALFCACRAHKKTKMAKFAL 539

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            +++  +    G  + + +S+A    Y   G  +DA  V  +M  R V
Sbjct: 540 NKLLKLEPTHTG--NYIFLSNA----YAALGQWEDAERVRVLMQNRGV 581



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 145/308 (47%), Gaps = 38/308 (12%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT+   +S ++    +L L    QIH +I++ NL  +  +   L    +    I+ +  +
Sbjct: 79  PTEAHFISLIHGSKTILQLH---QIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAV 135

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL---GACFQT 270
           F+    +NL ++N +I G   N      I  F+ M   G+ PD +T   +L      F T
Sbjct: 136 FNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFST 195

Query: 271 GRIDDAGRLFHVI-----KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
               + G   H +      E D+    +++  Y +  K   A  +F+E       P++F 
Sbjct: 196 ----ELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE------SPERFD 245

Query: 326 ISS-------VVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVS-SALIDMYCKCGVTD 375
             S       ++  C K  S+        KAV L   +     VS S LID + K G  D
Sbjct: 246 SGSSALLWNVLIKGCCKAGSM-------KKAVKLFKAMPKKENVSWSTLIDGFAKNGDMD 298

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
            A  +F+ MP +NVVSW +M++G+++NG   +AL+++ K+L+E ++P++FT VS LSAC 
Sbjct: 299 RAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACA 358

Query: 436 HADLFERG 443
                E G
Sbjct: 359 KIGGLEAG 366



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 121/313 (38%), Gaps = 63/313 (20%)

Query: 326 ISSVVSSCAKLASLYHG-------QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           I     + A   SL HG         +H + ++  +    L+++ LI         + + 
Sbjct: 74  IPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSL 133

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VFN    +N+ ++N++I G   N     A+  +  +L+  +KPD  T+  VL +   A 
Sbjct: 134 AVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSM--AG 191

Query: 439 LFE------------RGQNHFDSI----------------SAVHGITPSLDHY-----AC 465
           LF             R     DS                 SA      S + +     A 
Sbjct: 192 LFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSAL 251

Query: 466 MINLL----GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           + N+L     ++  + KAV L K++P K N + WSTL+   A  GD+      A  LF+ 
Sbjct: 252 LWNVLIKGCCKAGSMKKAVKLFKAMPKKEN-VSWSTLIDGFAKNGDMDR----AMELFDQ 306

Query: 522 EP-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK-----------FAAYSWIEID 569
            P  N   +  + + ++  G  E   S+ S M  + V+             A    +E  
Sbjct: 307 MPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAG 366

Query: 570 NKVHKFVSEDRTH 582
            ++HK++ ++  H
Sbjct: 367 LRIHKYIKDNGLH 379


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 379/706 (53%), Gaps = 105/706 (14%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           L+  Y K G  +YA  +FD+MP    D++SW AL+SA++ +G V                
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVD--------------- 137

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDR------FEPTDYTHVSAL-NACAQLLD---L 172
                           EA + F RM+  R          D   + AL +ACA       L
Sbjct: 138 ----------------EAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCL 181

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMIS 230
           RRG  +HG +V    G +  + N++  MY+   ++  A  +F+   +  R++VSWN +IS
Sbjct: 182 RRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 231 GYLKNGQPKKCIDLFQEMQLLG---LNPDEVTVSNILGACFQTGRIDD------------ 275
           G+  NG+ ++ +  F++M   G   + P+ VTV  +L +C + G ++             
Sbjct: 242 GFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 276 ---------------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                      A  +F  ++ K+ VCW+ MI GY Q    E+AL
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEAL 361

Query: 309 ILFNEMLSE------DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
            LF +ML E      +V+P+  ++ SV+++C++L +     ++H  AV  G+D D  ++S
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIAS 421

Query: 363 ALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           ALIDM  KCG  +    VF+ M   TR VVSW+SMI     +G+   AL L+ ++     
Sbjct: 422 ALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGY 481

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  T++SVLSAC HA L E+G++ F+S+   +G++P+  HYAC+++LLGR+  +D+A 
Sbjct: 482 EPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAH 541

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           ++I ++P K +  +W +LL+ C + G+ K GE+  + +  L+  + G +++L+NMY   G
Sbjct: 542 NVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAG 601

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DV  +R  ++   ++K    S+IEI N+V+ F++EDR+HPE+E+IY+EL  L ++++
Sbjct: 602 RWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVR 661

Query: 601 EAG-FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK---------KPHGVTPIRIM 650
           +A  +   T L + D      +    YHSE+LA+A+ LI               TPIRI 
Sbjct: 662 KAAKYVTETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRIT 721

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH + K  S +I R +I+RD++RFHHF  G CSC D W
Sbjct: 722 KNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 209/458 (45%), Gaps = 73/458 (15%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D+  +N+ IA  A +   + AL  F+RMQ       ++T  + L ACA L  L    Q+
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNG 236
           H  +    L  + F   AL D Y K G    A  +FD M   + ++VSW  +IS Y  NG
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 237 QPKKCIDLFQEMQLL-GLNPDEVTVSNI--LGA------------CFQTGR--------- 272
              +    F  M+ + G +  E    ++  LGA            C + G          
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 273 ---------------------IDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                                +  A R+F+   I+++D V W ++I G+T NG+ E AL 
Sbjct: 195 GFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALR 254

Query: 310 LFNEMLSED---VRPDKFSISSVVSSCAKLASLYHGQVVH----GKAVVLGVDDDLLVSS 362
            F +M+SE    V P++ ++ +++ SCA+L  +     VH     +   L V  D++V +
Sbjct: 255 TFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLT 314

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--- 419
           AL+DM+ +CG    A  +F+ +  +NVV W++MI GY Q     EAL L+ ++L E    
Sbjct: 315 ALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMV 374

Query: 420 ---LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA----CMINLLGR 472
              +KP++ T VSV++AC        G +   S+   + +   LD  A     +I++  +
Sbjct: 375 GVEVKPNAVTLVSVIAAC-----SRLGASRSASMIHKYAVATGLDQDARIASALIDMCAK 429

Query: 473 SSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIK 509
             D++    +   +     +++ WS+++    + G+ K
Sbjct: 430 CGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGK 467



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 24/248 (9%)

Query: 278 RLFHV-IKEKDNVCWTTMIV-GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           R +H  I  KD   W ++I    TQN   + AL  F  M +  V  + F+  +++ +CA 
Sbjct: 7   RWYHCSISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPALLKACAA 64

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWN 393
           L  L     VH     LG+  D   ++AL+D Y KCG    A  VF+ MP  + +VVSW 
Sbjct: 65  LRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWT 124

Query: 394 SMINGYAQNGQDLEALALYDKLL-------QENLKPDSFTFVSVLSACLHADLFERGQNH 446
           ++I+ Y+ NG   EA   + ++         E    D  +  +++SAC        G N 
Sbjct: 125 ALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSAC----AVGCGSNC 180

Query: 447 FDSISAVHGITPSLD-----HYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLL 499
               SAVHG+          H    M+++     DV  A  +   +P +   ++ W++L+
Sbjct: 181 LRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLI 240

Query: 500 SVCAMKGD 507
           S   + G+
Sbjct: 241 SGFTLNGE 248


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/714 (33%), Positives = 376/714 (52%), Gaps = 69/714 (9%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           AAT      L+  C R  D+   + L + + L+     +TFL N L+  Y+    L  A 
Sbjct: 17  AATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASA- 75

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
                                        LR LF  MP R++VS+ T ++G +      +
Sbjct: 76  -----------------------------LR-LFAAMPRRNAVSWTTLVSGLSQNLMHAD 105

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL  F+ M++    PT +   SA  A A L     G Q+H   V       +FV + L D
Sbjct: 106 ALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLAD 165

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEV 258
           MY+K G + +A  +FD+M  ++ V+W  MI GY KNG  +  +  F++M+  GL   D+ 
Sbjct: 166 MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 225

Query: 259 TVSNILGA--------------CFQTGR---------------------IDDAGRLFHVI 283
              ++L A              C  T                       ++ A R+  + 
Sbjct: 226 VFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKID 285

Query: 284 KEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
               NV   T+MI GY +    E+AL+++ E+  + V P++F+ SS++  CA  A L  G
Sbjct: 286 PGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQG 345

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             +H + +   +  D  V S L+DMY KCG+   +  +FN +  R  ++WN++IN +AQ+
Sbjct: 346 AQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQH 405

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA+  +D+++   ++P+   FVS+L+AC HA L + G  +F S+   HGI P  +H
Sbjct: 406 GHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEH 465

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y+C+I+  GR+  +D+A   I  +P KPN+  W +LL  C M+G  + GE+AA++L +LE
Sbjct: 466 YSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLE 525

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G ++ LS +YA+ G+WEDV ++R  M+   +KK   +SW++ + K H F SED +H
Sbjct: 526 PGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSH 585

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+ + IYE+L +L  +++E G+ P+T  +  + ++  K + + YHSE++A+A+ LI  P 
Sbjct: 586 PQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMP- 644

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              PI + KN+R+C DCH   KF   +  R II+RD++RFHHFV G CSC D W
Sbjct: 645 ATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/642 (34%), Positives = 351/642 (54%), Gaps = 56/642 (8%)

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
           + +D R LFD MP R+ V++   + G+         L+VF  M +    P+ YT  + LN
Sbjct: 88  AARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLN 147

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           AC    D+  GKQ+HG  +         + N+L  +YAK G +D A   F R+  +N+++
Sbjct: 148 ACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 207

Query: 225 WNLMISGYLKNGQPKKCIDL----FQEMQLLGLNPDEVTVSNILGAC------------- 267
           W  MIS   ++   ++C++L    F +M + G+ P+E T+++++  C             
Sbjct: 208 WTTMISACAED---EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQ 264

Query: 268 ----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---NG 302
                                  + G  D+A RLF  +++   + W  MI GY Q   + 
Sbjct: 265 AFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSA 324

Query: 303 KEE--------DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           K++         AL +F ++    ++PD F+ SS++S C+ + +L  G+ +H + +  G 
Sbjct: 325 KDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGF 384

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D++V+SAL++MY KCG   DA   F  MPTR  V+W SMI+GY+Q+GQ  EA+ L+++
Sbjct: 385 LSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEE 444

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +    ++P+  TFVS+LSAC +A L E  +++FD +   + I P +DHY CMI++  R  
Sbjct: 445 MRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLG 504

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            V+ A   IK    +PN  IWS+L++ C   G+++    AA  L EL+P     YI+L N
Sbjct: 505 RVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLN 564

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           MY +  RW+DVA +R  MK ++V      SWI I +KV+ F + DRTHP+   +Y+ L  
Sbjct: 565 MYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLEN 624

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEK--VKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
           L++K +  G+ P     L D++++EK    S+ +HSE+LA+A  L++ P G T +R+ KN
Sbjct: 625 LLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGAT-VRVTKN 683

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           I +C DCH  +K  S +  R II+RDS R H F  G CSC D
Sbjct: 684 ITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGD 725



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E   T ++  C    D+ L K++Q+       E N   + N  ++ Y + G+   
Sbjct: 236 GVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLP-VKNSTMYLYLRKGETDE 294

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  LF++M    II+WNA++S +A     Q + +  D +  R             ++GF 
Sbjct: 295 AMRLFEQMEDASIITWNAMISGYA-----QIMDSAKDDLQAR-------------SRGF- 335

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +AL +F  +++   +P  +T  S L+ C+ ++ L +G+QIH + +      +V V +AL
Sbjct: 336 -QALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 394

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MY K G I  A   F  M  R  V+W  MISGY ++GQP++ I LF+EM+L G+ P+E
Sbjct: 395 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 454

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFN 312
           +T  ++L AC   G +++A   F ++K++  +      +  MI  + + G+ EDA   F+
Sbjct: 455 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDA---FS 511

Query: 313 EMLSEDVRPDKFSISSVVSSC 333
            +      P++   SS+V+ C
Sbjct: 512 FIKRTGFEPNEAIWSSLVAGC 532



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/454 (24%), Positives = 195/454 (42%), Gaps = 92/454 (20%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C    DV+L K++  +  + +   + T + N L   YAK G L  A   F ++P +++I+
Sbjct: 149 CLASCDVDLGKQVHGYA-IKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVIT 207

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W  ++SA A      +L                               + +F  M  D  
Sbjct: 208 WTTMISACAEDEECVEL------------------------------GMSLFIDMLMDGV 237

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P ++T  S ++ C   LDL  GKQ+           N+ V+N+   +Y + GE D+A  
Sbjct: 238 MPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMR 297

Query: 213 LFDRMNNRNLVSWNLMISGYLK-----------NGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           LF++M + ++++WN MISGY +             +  + + +F++++   + PD  T S
Sbjct: 298 LFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFS 357

Query: 262 NILGACF-----------------------------------QTGRIDDAGRLFHVIKEK 286
           +IL  C                                    + G I DA + F  +  +
Sbjct: 358 SILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTR 417

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
             V WT+MI GY+Q+G+ ++A+ LF EM    VRP++ +  S++S+C+     Y G V  
Sbjct: 418 TFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACS-----YAGLVEE 472

Query: 347 GKAVVLGVDDDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGY 399
            +     +  +  +         +IDM+ + G  +DA++         N   W+S++ G 
Sbjct: 473 AEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGC 532

Query: 400 AQNGQDLEALALYDKLLQENLKPDSF-TFVSVLS 432
             +G    A    DKLL+  LKP    T++ +L+
Sbjct: 533 RSHGNMELAFYAADKLLE--LKPKGIETYILLLN 564



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 101/212 (47%), Gaps = 21/212 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++  +AL++ + + G +QD    F +MP R  V++ + I+G++  G  +EA+Q+F  
Sbjct: 385 LSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEE 444

Query: 147 MQKDRFEPTDYTHVSALNACA---------QLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           M+     P + T VS L+AC+            D+ + K+   + VV + G        +
Sbjct: 445 MRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMK-KEYCIEPVVDHYG-------CM 496

Query: 198 TDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
            DM+ + G ++ A     R     N   W+ +++G   +G  +  +  +   +LL L P 
Sbjct: 497 IDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNME--LAFYAADKLLELKPK 554

Query: 257 EV-TVSNILGACFQTGRIDDAGRLFHVIKEKD 287
            + T   +L     T R  D  R+  ++K++D
Sbjct: 555 GIETYILLLNMYISTERWQDVARVRKLMKQED 586


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/677 (33%), Positives = 360/677 (53%), Gaps = 75/677 (11%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y K  +   A  +FD MP R+++SW+AL+S H  +G   DL+            
Sbjct: 45  NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG---DLKG----------- 90

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                            +L +FS M +    P ++T  + L AC  L  L +G QIHG  
Sbjct: 91  -----------------SLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC 133

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +       V V N+L DMY+K G I++A  +F R+ +R+L+SWN MI+G++  G   K +
Sbjct: 134 LKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKAL 193

Query: 243 DLFQEMQLLGLN--PDEVTVSNILGACFQTGRID-------------------------- 274
           D F  MQ   +   PDE T++++L AC  TG I                           
Sbjct: 194 DTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSL 253

Query: 275 -----------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                       A + F  IKEK  + W+++I+GY Q G+  +A+ LF  +   + + D 
Sbjct: 254 VDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS 313

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F++SS++   A  A L  G+ +   AV L    +  V ++++DMY KCG+ D+A   F  
Sbjct: 314 FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAE 373

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  ++V+SW  +I GY ++G   +++ ++ ++L+ N++PD   +++VLSAC H+ + + G
Sbjct: 374 MQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEG 433

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +  F  +   HGI P ++HYAC+++LLGR+  + +A  LI ++P KPN  IW TLLS+C 
Sbjct: 434 EELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCR 493

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + GDI+ G+   + L  ++  N   Y+M+SN+Y   G W +  + R     K +KK A  
Sbjct: 494 VHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGM 553

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVK 622
           SW+EI+ +VH F S + +HP T +I E L +  ++L +E G+    K  LHD  +E K +
Sbjct: 554 SWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEE 613

Query: 623 SICYHSEKLALAYCLIK---KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           ++  HSEKLA+   L        G T IR+ KN+RVC DCH F+K  S I     ++RD+
Sbjct: 614 NLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDA 672

Query: 680 NRFHHFVGGNCSCKDNW 696
            RFH F  G CSC D W
Sbjct: 673 VRFHSFEDGCCSCGDYW 689



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 129/287 (44%), Gaps = 37/287 (12%)

Query: 9   QAIDTLYSRGQAATEE-----AYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLH 62
           +A+DT     +A  +E       T L+  C+    +   K++   +    F+ P++  + 
Sbjct: 191 KALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT 250

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
             L+  Y K G LF AR  FD++  + +ISW++L+  +A+ G                  
Sbjct: 251 GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV--------------- 295

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                           EA+ +F R+Q+   +   +   S +   A    LR+GKQ+    
Sbjct: 296 ----------------EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALA 339

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V    G    V N++ DMY K G +D+A   F  M  ++++SW ++I+GY K+G  KK +
Sbjct: 340 VKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSV 399

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
            +F EM    + PDEV    +L AC  +G I +   LF  + E   +
Sbjct: 400 RIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 446



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 70/119 (58%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ S++  C +      G  VH   +  G   +L+ S+ LIDMYCKC     A+ VF+ M
Sbjct: 8   NLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           P RNVVSW+++++G+  NG    +L+L+ ++ ++ + P+ FTF + L AC   +  E+G
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKG 126


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/616 (35%), Positives = 344/616 (55%), Gaps = 56/616 (9%)

Query: 93  WNALLSAHARSGS--------VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +N LL+ +AR+          + D R LFD++P  D+VSYNT ++     G  R A  +F
Sbjct: 46  YNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLF 105

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           +                A+ A A+                     NV   N +    ++ 
Sbjct: 106 A----------------AMPATAR---------------------NVTSWNTMLSGLSRS 128

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE---VTVS 261
           G + +AR +F  M  RN +SWN M+S +   G      + F++       PD+   V  +
Sbjct: 129 GAVGEARAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDA------PDKENAVLWT 182

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVR 320
            ++     +G ++ A + F  +  +  V W  ++ GY +N + EDAL +F  M+ + DVR
Sbjct: 183 AMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVR 242

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P++ ++SSV+  C+ L++L  G+ VH     L +   +   ++L+ MYCKCG  D A  +
Sbjct: 243 PNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKL 302

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M  R+V++WN+MI+GYA +G   EA+ L++K+  + ++P+  TFV+VL+AC+H  + 
Sbjct: 303 FSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMC 362

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           + G   F+ +  V+GI   +DHY+CM++LL R+  +++AV LI+S+P +P+   + TLL+
Sbjct: 363 DFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLN 422

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
              +  +++  E AA  L E  P NAG Y+ L+N+YA   +W DV+ +R  MK   V K 
Sbjct: 423 ASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKT 482

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
             YSW+EI+  +H F S DR HP+  +I+E L +L ++++  G+ P+    LHD  E  K
Sbjct: 483 PGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLK 542

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
           V+ +  HSEKLA+A+ L+    G+T +RI KN+RVCGDCH   K  S I  R IILRD+ 
Sbjct: 543 VQMLMRHSEKLAIAFGLLSTAPGIT-LRIFKNLRVCGDCHTAAKLISKIEDREIILRDTT 601

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  G+CSC D W
Sbjct: 602 RFHHFRSGHCSCGDYW 617



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 171/380 (45%), Gaps = 64/380 (16%)

Query: 58  TTFLHNRLLHFYAKSGK--------LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL 109
           TT  +NRLL  YA++ +        L  AR LFD++P  D +S+N LLS H  +G V+  
Sbjct: 42  TTADYNRLLAGYARAARPGGRRDRLLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGA 101

Query: 110 RALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-----YTHVSA 162
           R LF  MP   R+  S+NT ++G +  G   EA  VF  M        +     + H   
Sbjct: 102 RDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVFLAMPARNSISWNAMVSCFAHAGD 161

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           + A  +  +    K+            N  +  A+   Y   G ++KA   F+ M  R+L
Sbjct: 162 MCAAEECFEDAPDKE------------NAVLWTAMVSGYMDSGHVEKAMQFFEAMPVRSL 209

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-------------- 267
           VSWN +++GY+KN + +  + +F+ M +   + P+E T+S++L  C              
Sbjct: 210 VSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNLSALGFGRQVHQ 269

Query: 268 ---------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                 + G +D A +LF  ++ +D + W  MI GY  +G   +
Sbjct: 270 WCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHHGDGRE 329

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALI 365
           A+ LF +M S+ V P+  +  +V+++C        G Q       V G++  +   S ++
Sbjct: 330 AIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGIEARVDHYSCMV 389

Query: 366 DMYCKCGVTDDAWTVFNMMP 385
           D+ C+ G  + A ++   MP
Sbjct: 390 DLLCRAGSLERAVSLIRSMP 409


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/635 (33%), Positives = 349/635 (54%), Gaps = 60/635 (9%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           S+++   I  +A+ G  R +L  F+ ++     P  +   S L A          + +H 
Sbjct: 41  SLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHA 100

Query: 181 KIVVGNLGGNVFVRNALTDMYAK----------------------GGEIDKARWLFDRMN 218
            ++      +++  NAL +MY+K                        +ID  R LFDRM 
Sbjct: 101 AVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMP 160

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            R++VSWN +I+G  +NG  ++ +++ +EM    L PD  T+S+IL    +   +     
Sbjct: 161 VRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKE 220

Query: 279 L-----------------------------------FHVIKEKDNVCWTTMIVGYTQNGK 303
           +                                   FH++  +D + W ++I G  QNG+
Sbjct: 221 IHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGR 280

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            +  L  F  ML E V+P + S SSV+ +CA L +L  G+ +H   + LG DD+  ++S+
Sbjct: 281 FDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASS 340

Query: 364 LIDMYCKCGVTDDAWTVFNM--MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           L+DMY KCG    A  +FN   M  R++VSW ++I G A +G  L+A++L++++L + +K
Sbjct: 341 LLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVK 400

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P    F++VL+AC HA L + G  +F+S+    G+ P L+HYA + +LLGR+  +++A D
Sbjct: 401 PCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYD 460

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
            I ++  +P   +WSTLL+ C    +I+  E     +  ++P N G ++++SN+Y+A  R
Sbjct: 461 FISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQR 520

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W D A +R  M+   +KK  A SWIE+ NKVH F++ D++HP  + I E L+ L++++++
Sbjct: 521 WRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEK 580

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
            G+  +T  VLHD  EE K   +  HSE+LA+A+ +I    G T IR++KNIRVC DCH 
Sbjct: 581 EGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTT-IRVIKNIRVCVDCHT 639

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            +KF + I+GR II+RD++RFHHF  G+CSC D W
Sbjct: 640 AIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 167/335 (49%), Gaps = 43/335 (12%)

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           S  +  +R LFD+MP+RD VS+NT IAG A  G   EAL +   M K+   P  +T  S 
Sbjct: 146 SVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSI 205

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L    +  ++ +GK+IHG  +      +VF+ ++L DMYAK  +++ +   F  ++NR+ 
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDA 265

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           +SWN +I+G ++NG+  + +  F+ M    + P +V+ S+++ AC               
Sbjct: 266 ISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAY 325

Query: 268 --------------------FQTGRIDDAGRLFHVIK--EKDNVCWTTMIVGYTQNGKEE 305
                                + G I  A  +F+ I+  ++D V WT +I+G   +G   
Sbjct: 326 IIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHAL 385

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSAL 364
           DA+ LF EML + V+P   +  +V+++C+    +  G +  +      GV   L   +A+
Sbjct: 386 DAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAV 445

Query: 365 IDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMI 396
            D+  + G  ++A+   + M   PT +V  W++++
Sbjct: 446 ADLLGRAGRLEEAYDFISNMGEEPTGSV--WSTLL 478



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 6/212 (2%)

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           +  R  FDK    D+   ++L+  +A+   V+     F  +  RD++S+N+ IAG    G
Sbjct: 224 YAIRHGFDK----DVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNG 279

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
              + L  F RM K++ +P   +  S + ACA L  L  GKQ+H  I+      N F+ +
Sbjct: 280 RFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIAS 339

Query: 196 ALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
           +L DMYAK G I  AR++F++  M +R++VSW  +I G   +G     + LF+EM + G+
Sbjct: 340 SLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGV 399

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
            P  V    +L AC   G +D+  + F+ ++ 
Sbjct: 400 KPCYVAFMAVLTACSHAGLVDEGWKYFNSMQR 431


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/706 (33%), Positives = 378/706 (53%), Gaps = 105/706 (14%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           L+  Y K G  +YA  +FD+MP    D++SW AL+SA++ +G V                
Sbjct: 93  LVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVD--------------- 137

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDR------FEPTDYTHVSAL-NACAQLLD---L 172
                           EA   F RM+  R          D   + AL +ACA       L
Sbjct: 138 ----------------EAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCL 181

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR--MNNRNLVSWNLMIS 230
           RRG  +HG +V    G +  + N++  MY+   ++  A  +F+   +  R++VSWN +IS
Sbjct: 182 RRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLIS 241

Query: 231 GYLKNGQPKKCIDLFQEMQLLG---LNPDEVTVSNILGACFQTGRIDD------------ 275
           G+  NG+ ++ +  F++M   G   + P+ VTV  +L +C + G ++             
Sbjct: 242 GFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRH 301

Query: 276 ---------------------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                      A  +F  ++ K+ VCW+ MI GY Q    E+AL
Sbjct: 302 SSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEAL 361

Query: 309 ILFNEMLSE------DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
            LF +ML E      +V+P+  ++ SV+++C++L +     ++H  AV  G+D D  ++S
Sbjct: 362 RLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIAS 421

Query: 363 ALIDMYCKCGVTDDAWTVFNMM--PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           ALIDM  KCG  +    VF+ M   TR VVSW+SMI     +G+   AL L+ ++     
Sbjct: 422 ALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGY 481

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +P+  T++SVLSAC HA L E+G++ F+S+   +G++P+  HYAC+++LLGR+  +D+A 
Sbjct: 482 EPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAH 541

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           ++I ++P K +  +W +LL+ C + G+ K GE+  + +  L+  + G +++L+NMY   G
Sbjct: 542 NVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAG 601

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+DV  +R  ++   ++K    S+IEI N+V+ F++EDR+HPE+E+IY+EL  L ++++
Sbjct: 602 RWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDERVR 661

Query: 601 EAG-FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK---------KPHGVTPIRIM 650
           +A  +   T L + D      +    YHSE+LA+A+ LI               TPIRI 
Sbjct: 662 KAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPIRIT 721

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH + K  S +I R +I+RD++RFHHF  G CSC D W
Sbjct: 722 KNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 208/458 (45%), Gaps = 73/458 (15%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D+  +N+ IA  A +   + AL  F+RMQ       ++T  + L ACA L  L    Q+
Sbjct: 16  KDTFHWNSLIAKNATQN-PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYLKNG 236
           H  +    L  + F   AL D Y K G    A  +FD M   + ++VSW  +IS Y  NG
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 237 QPKKCIDLFQEMQLL-GLNPDEVTVSNI--LGA------------CFQTGR--------- 272
              +    F  M+ + G +  E    ++  LGA            C + G          
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 273 ---------------------IDDAGRLFH--VIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                                +  A R+F+   I+++D V W ++I G+  NG+ E AL 
Sbjct: 195 GFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALR 254

Query: 310 LFNEMLSED---VRPDKFSISSVVSSCAKLASLYHGQVVH----GKAVVLGVDDDLLVSS 362
            F +M+SE    V P++ ++ +++ SCA+L  +     VH     +   L V  D++V +
Sbjct: 255 TFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLT 314

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--- 419
           AL+DM+ +CG    A  +F+ +  +NVV W++MI GY Q     EAL L+ ++L E    
Sbjct: 315 ALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMV 374

Query: 420 ---LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA----CMINLLGR 472
              +KP++ T VSV++AC        G +   S+   + +   LD  A     +I++  +
Sbjct: 375 GVEVKPNAVTLVSVIAAC-----SRLGASRSASMIHKYAVATGLDQDARIASALIDMCAK 429

Query: 473 SSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIK 509
             D++    +   +     +++ WS+++    + G+ K
Sbjct: 430 CGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGK 467



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 283 IKEKDNVCWTTMIV-GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
           I  KD   W ++I    TQN   + AL  F  M +  V  + F+  +++ +CA L  L  
Sbjct: 13  ISHKDTFHWNSLIAKNATQN--PQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLP 70

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGY 399
              VH     LG+  D   ++AL+D Y KCG    A  VF+ MP  + +VVSW ++I+ Y
Sbjct: 71  TLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAY 130

Query: 400 AQNGQDLEALALYDKLL-------QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           + NG   EA   + ++         E    D  +  +++SAC        G N     SA
Sbjct: 131 SSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSAC----AVGCGSNCLRRGSA 186

Query: 453 VHGITPSLD-----HYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMK 505
           VHG+          H    M+++     DV  A  +   +P +   ++ W++L+S   + 
Sbjct: 187 VHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLN 246

Query: 506 GD 507
           G+
Sbjct: 247 GE 248


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/580 (37%), Positives = 337/580 (58%), Gaps = 50/580 (8%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVF--VRNALTDMYAKGGEIDKARWLFDRMNNR 220
           LN C++   L +GKQ+HG  VV  LG +V   V N++ DMY+K G + +A  +F+ +  R
Sbjct: 11  LNKCSKRRLLDQGKQVHG--VVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVR 68

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------- 267
           N++SWN MI+GY      ++ ++LF+EM+  G  PD  T S+ L AC             
Sbjct: 69  NVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIH 128

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    +  R+ +A ++F  I+EK  + W+T+I+GY Q   
Sbjct: 129 AALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDN 188

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL---V 360
            ++A+ LF E+     R D F +SS++   A  A L  G+ +H  A  + V   LL   V
Sbjct: 189 LKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMH--AYTIKVPYGLLEMSV 246

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +++++DMY KCG+T +A  +F  M  RNVVSW  MI GY ++G   +A+ L++++ +  +
Sbjct: 247 ANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGI 306

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           +PDS T+++VLSAC H+ L + G+ +F  + +   I P ++HYACM++LLGR   + +A 
Sbjct: 307 EPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAK 366

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +LI+ +P KPN  IW TLLSVC M GD++ G+     L   E  N   Y+M+SNMYA  G
Sbjct: 367 NLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAG 426

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL- 599
            W++   IR ++K K +KK A  SW+E+D ++H F + D  HP  E I+E L ++ K++ 
Sbjct: 427 YWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVK 486

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK---KPHGVTPIRIMKNIRVC 656
           +E G+  +    LHD +EE K++S+  HSEKLA+   L++   K  G   IRI KN+RVC
Sbjct: 487 EEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVC 546

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           GDCH F+K  S ++    ++RD+NRFH F  G CSC D W
Sbjct: 547 GDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 186/387 (48%), Gaps = 53/387 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+++  +++ G V +   +F+ +P+R+ +S+N  IAG+ N+    EAL +F  M++    
Sbjct: 43  NSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEV 102

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRNALTDMYAKGGEIDKAR 211
           P  YT+ S+L AC+       G QIH  ++           V  AL D+Y K   + +AR
Sbjct: 103 PDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEAR 162

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-------------LLGLNPD-- 256
            +FDR+  ++++SW+ +I GY +    K+ +DLF+E++             ++G+  D  
Sbjct: 163 KVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFA 222

Query: 257 --------------------EVTVSN-ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                               E++V+N +L    + G   +A  LF  + E++ V WT MI
Sbjct: 223 LLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMI 282

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            GY ++G    A+ LFNEM    + PD  +  +V+S+C+     + G +  GK     + 
Sbjct: 283 TGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACS-----HSGLIKEGKKYFSILC 337

Query: 356 DDLLVS------SALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEA 408
            +  +       + ++D+  + G   +A  +   MP + NV  W ++++    +G D+E 
Sbjct: 338 SNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHG-DVEM 396

Query: 409 LALYDKLL--QENLKPDSFTFVSVLSA 433
                ++L  +E   P ++  VS + A
Sbjct: 397 GKQVGEILLRREGNNPANYVMVSNMYA 423



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 49/294 (16%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K  ++  AR +FD++  + ++SW+ L                            
Sbjct: 148 LVDLYVKCRRMAEARKVFDRIEEKSVMSWSTL---------------------------- 179

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG---K 181
              I G+A +   +EA+ +F  +++ R     +   S +   A    L +GKQ+H    K
Sbjct: 180 ---ILGYAQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIK 236

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           +  G L   + V N++ DMY K G   +A  LF  M  RN+VSW +MI+GY K+G   K 
Sbjct: 237 VPYGLL--EMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKA 294

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIV 296
           ++LF EMQ  G+ PD VT   +L AC  +G I +  + F ++     +      +  M+ 
Sbjct: 295 VELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVD 354

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
              + G+ ++A  L  +M    ++P+     +++S C       HG V  GK V
Sbjct: 355 LLGRGGRLKEAKNLIEKM---PLKPNVGIWQTLLSVCR-----MHGDVEMGKQV 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 104/199 (52%), Gaps = 8/199 (4%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ++ +++ C+K   L  G+ VHG    LG D   +V +++IDMY KCG+  +A  VFN +P
Sbjct: 7   LNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLP 66

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-Q 444
            RNV+SWN+MI GY       EAL L+ ++ ++   PD +T+ S L AC  AD    G Q
Sbjct: 67  VRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQ 126

Query: 445 NHFDSISAVHGITPSLDHYA---CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            H   I   HG  P L   A    +++L  +   + +A  +   +  K + + WSTL+  
Sbjct: 127 IHAALIR--HGF-PYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEK-SVMSWSTLILG 182

Query: 502 CAMKGDIKHGEMAARHLFE 520
            A + ++K      R L E
Sbjct: 183 YAQEDNLKEAMDLFRELRE 201



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 103/202 (50%), Gaps = 14/202 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + GK  +A  +     L ++   N++L  + + G   +  ALF +M  R+ VS+   I G
Sbjct: 225 EQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVSWTVMITG 284

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN--LG 188
           +   G   +A+++F+ MQ++  EP   T+++ L+AC+    ++ GK+ +  I+  N  + 
Sbjct: 285 YGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKK-YFSILCSNQKIK 343

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMIS-----GYLKNGQPKKCI 242
             V     + D+  +GG + +A+ L ++M  + N+  W  ++S     G ++ G+    I
Sbjct: 344 PKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEI 403

Query: 243 DLFQEMQLLGLNP-DEVTVSNI 263
            L +E    G NP + V VSN+
Sbjct: 404 LLRRE----GNNPANYVMVSNM 421


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 352/650 (54%), Gaps = 49/650 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A+ G +     +FD MP R+ VS+   + GF + G +RE L++F  M+     
Sbjct: 43  NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS 102

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T  + L AC      R G QIHG  V     G+  V N+L  MY+KG     AR +
Sbjct: 103 PNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRV 160

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTG- 271
           FD + +RNL +WN MISGY   GQ +  + +F+EMQ      PDE T +++L AC   G 
Sbjct: 161 FDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGA 220

Query: 272 ------------------------------------RIDDAGRLFHVIKEKDNVCWTTMI 295
                                               R+  A ++F  ++ ++ + WTT+I
Sbjct: 221 AREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVI 280

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
           VG+ Q G+ ++A+ LF    S  VR D   +SSVV+  A  A +  G+ VH         
Sbjct: 281 VGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAG 340

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V+++L+DMY KCG+T +A   F  MP RNVVSW +MING  ++G   EA+ L++++
Sbjct: 341 LDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEM 400

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
             E ++ D   ++++LSAC H+ L +  + +F  I     + P  +HYACM++LLGR+ +
Sbjct: 401 QAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 460

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           + +A +LI S+P +P   +W TLLS C +  D+  G      L  ++  N   Y+MLSN+
Sbjct: 461 LREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNI 520

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV-SEDRTHPETEIIYEELSK 594
            A  G W +   IR +M+ K ++K    SW E+D +VH F    D  HP+   I   L +
Sbjct: 521 LAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALRE 580

Query: 595 LIKKLQEA-GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP------- 646
           +  +++E  G+S + +  LHD  EE +V+S+  HSE+LA+   L++   G          
Sbjct: 581 VEARMRERLGYSGDARCALHDVDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEV 640

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+ KN+RVCGDCH F+K  S ++ R +++RD+NRFH F  G CSC+D W
Sbjct: 641 VRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANRFHRFQNGACSCRDYW 690



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 193/413 (46%), Gaps = 69/413 (16%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L A A+   LR G Q+H  ++    G +  + N L DMYAK G++  A  +FD M  RN+
Sbjct: 11  LRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNV 70

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSW  ++ G+L +G+ ++C+ LF EM+  G +P+E T+S  L AC               
Sbjct: 71  VSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVCV 130

Query: 268 -----------------FQTGR-IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                            +  GR   DA R+F VI  ++   W +MI GY   G+  D+L+
Sbjct: 131 RTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLL 190

Query: 310 LFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALID 366
           +F EM    D +PD+F+ +S++ +C+ L +   G  VH    V GV    + +++ AL+D
Sbjct: 191 VFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLD 250

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           +Y KC     A  VF+ +  RN + W ++I G+AQ GQ  EA+ L+ +     ++ D   
Sbjct: 251 VYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHV 310

Query: 427 FVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDH----------------------- 462
             SV++      L E+G Q H  +     G+  S+ +                       
Sbjct: 311 LSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREMP 370

Query: 463 ------YACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKG 506
                 +  MIN +G+     +A+DL + +     + + + +  LLS C+  G
Sbjct: 371 ARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSACSHSG 423



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 141/344 (40%), Gaps = 48/344 (13%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP-NTTFLHNRLLHFYAKSGKLFYARDL 81
           E  +  L+  C+ +       ++ + M +    P +   L   LL  Y K  +L  A  +
Sbjct: 205 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 264

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD +  R+ I W  ++  HA+ G V                               +EA+
Sbjct: 265 FDGLERRNAIQWTTVIVGHAQEGQV-------------------------------KEAM 293

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F R          +   S +   A    + +GKQ+H        G +V V N+L DMY
Sbjct: 294 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 353

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G   +A   F  M  RN+VSW  MI+G  K+G  ++ IDLF+EMQ  G+  DEV   
Sbjct: 354 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 413

Query: 262 NILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
            +L AC  +G +D+  R F  I        K +   C   ++ G     +E   LI    
Sbjct: 414 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLL-GRAGELREAKELI---- 468

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            LS  + P      +++S+C     +  G+ V    V+L VD D
Sbjct: 469 -LSMPMEPTVGVWQTLLSACRVHKDVAVGREV--GDVLLAVDGD 509



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           I+ ++ + A+ +SL  G  +H   + LG   D ++++ LIDMY KCG    A  VF+ MP
Sbjct: 7   IADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMP 66

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            RNVVSW +++ G+  +G+  E L L+ ++      P+ FT  + L AC
Sbjct: 67  ERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKAC 115


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/525 (36%), Positives = 314/525 (59%), Gaps = 36/525 (6%)

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL-- 264
           +D  R +F+ M  ++LVSWN +I+G  +NG   + + + +EM    L PD  T+S++L  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 265 --------------GACFQTG-------------------RIDDAGRLFHVIKEKDNVCW 291
                         G   + G                   R+ D+ R+F ++ E+D + W
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            ++I G  QNG  ++ L  F +ML   ++P  +S SS++ +CA L +L+ G+ +HG    
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G D+++ ++S+L+DMY KCG    A  +F+ M  R++VSW +MI G A +G  L+A+ L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++++  E ++P+   F++VL+AC HA L +    +F+S++   GI P ++HYA + +LLG
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +++A D I  +P  P   +W+TLLS C +  ++   E  A  + E++P N G YI+
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N+Y+A  RW++ A  R+S++   ++K  A SWIE+ NKV+ F++ D +HP  E I E 
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           +  L++ +++ G+ P+T  V HD +EE+K   +C HSE+LA+ + +I  P G T IR+ K
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTT-IRVTK 728

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH   KF S I+GR I++RD++RFHHF  G CSC D W
Sbjct: 729 NLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 208/429 (48%), Gaps = 33/429 (7%)

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
           + D   LF+ +    ++++ + I  + + G   ++L  F  M      P      S L A
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-------GGEIDKARWLFDRMN 218
           CA L+DL  G+ +HG I+   L  +++  NAL +MY+K       G +   A  + D M 
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQ------------EMQLLGLNPDEVTVSNILGA 266
            R   + ++  +  L   Q +K  D+              E Q+L ++    +    + A
Sbjct: 178 ER---TRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEA 234

Query: 267 C---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           C           +  +D   ++F ++ EKD V W T+I G  +NG   + L +  EM   
Sbjct: 235 CNLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGA 294

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +++PD F++SSV+   A+   +  G+ +HG ++  G+D ++ V+S+LIDMY KC    D+
Sbjct: 295 NLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDS 354

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
           + VF ++  R+ +SWNS+I G  QNG   E L  + ++L   +KP S++F S++ AC H 
Sbjct: 355 YRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHL 414

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
                G+     I+  +G   ++   + ++++  +  ++  A  +   +  + + + W+ 
Sbjct: 415 TTLHLGKQLHGYITR-NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTA 472

Query: 498 LLSVCAMKG 506
           ++  CA+ G
Sbjct: 473 MIMGCALHG 481



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 133/301 (44%), Gaps = 34/301 (11%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           + D+ RLF+ +     + W ++I  YT +G    +L  F  ML+  + PD     SV+ +
Sbjct: 58  LHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKA 117

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD-------AWTVFNMMP 385
           CA L  L  G+ +HG  + +G+D DL   +AL++MY K             A  V + M 
Sbjct: 118 CAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 386 --TRNVVSWNSMINGYAQNGQDLEALALYD----------KLLQENLKPDSFTFVSVLSA 433
             TR+V + + ++    +   D+EA   YD          ++L+ + KP S  +  + + 
Sbjct: 178 ERTRSVRTASVLVGNQGRKVSDIEAFN-YDVSCRSREFEAQVLEIDYKPRS-EYREMEAC 235

Query: 434 CLHADLFERGQN-HFDSISAVHGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPH-- 488
            L   + +   +   DS+  +  + P  D   +  +I    R+    + + +++ +    
Sbjct: 236 NLGQQIKDISHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN 295

Query: 489 -KPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            KP+S   S++L + A   DI  G+     + R   + E   A   I   +MYA C R  
Sbjct: 296 LKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLI---DMYAKCTRVV 352

Query: 544 D 544
           D
Sbjct: 353 D 353


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/608 (36%), Positives = 333/608 (54%), Gaps = 37/608 (6%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
            TA A   N GF+       +  +        + H S L +C     LR G+Q+HG+++V
Sbjct: 31  GTARALPPNTGFAASPPPPSTNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLV 90

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             LG +  +   L D+YA  G++  AR LFD M  RN+  WN++I  Y + G  +  + L
Sbjct: 91  SGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRL 150

Query: 245 FQEMQLLGLNPDEVTVSNILGAC-----FQTGR--------------------------- 272
           ++ M   G+ PD  T   +L AC      +TGR                           
Sbjct: 151 YRGMVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAK 210

Query: 273 ---IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
              +DDA  +F  I  +D V W +MI  Y QNG+  +AL L  +M +  + P   ++ S 
Sbjct: 211 CGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSA 270

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           VS+ A  A+L  G+ +HG     G      + ++L+DMY K G    A  +F  +  R +
Sbjct: 271 VSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           VSWN+MI GY  +G   EALAL++K+  +  + PD+ TFV VLSAC H  + E  +  F 
Sbjct: 331 VSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFY 390

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            +   + I P++ HY C+I++LG +   ++A DLIK +  +P+S IW  LL+ C +  ++
Sbjct: 391 LMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNV 450

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + GE+A + L ELEP +AG Y+ LSN+YA  G+WE  A +R  M ++ +KK  A SWIE+
Sbjct: 451 ELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIEL 510

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
             K H F+  D +HP ++ IY EL +L   + +AG+ P+   V H+  ++EK   +  HS
Sbjct: 511 KGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHS 570

Query: 629 EKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           E+LA+A+ LI  P G T + + KN+RVC DCH+ +K  S I+ R II+RD NR+HHFV G
Sbjct: 571 ERLAIAFGLISTPPG-TKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNG 629

Query: 689 NCSCKDNW 696
            CSCKD W
Sbjct: 630 ECSCKDYW 637



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 188/419 (44%), Gaps = 73/419 (17%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR----DIISWNALLSAHARSGSVQDLRA 111
           P+    H  +L     SG L   R L  ++ +     D +    L+  +A  G V   R 
Sbjct: 59  PHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARR 118

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LFD MP R+   +N  I  +A +G    A++++  M +   EP ++T+   L ACA LLD
Sbjct: 119 LFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLD 178

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+++H ++     G +VFV   + DMYAK G +D AR +FD +  R+ V WN MI+ 
Sbjct: 179 LETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAA 238

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTV------------------------------- 260
           Y +NG+P + + L ++M   G+ P   T+                               
Sbjct: 239 YGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQ 298

Query: 261 ----SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
               ++++    ++G +  A  LF  + +++ V W  MI GY  +G  ++AL LFN+M  
Sbjct: 299 DKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKG 358

Query: 317 E-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           +  V PD  +   V+S+C            HG  V    +   L+ +A            
Sbjct: 359 DAQVTPDNITFVGVLSACN-----------HGGMVEEAKEFFYLMVNA------------ 395

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
                +++ PT  V  +  +I+     G+  EA   YD +   +++PDS  + ++L+ C
Sbjct: 396 -----YSIKPT--VQHYTCVIDVLGHTGRFEEA---YDLIKGMSIEPDSGIWGALLNGC 444


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/647 (33%), Positives = 367/647 (56%), Gaps = 38/647 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + +++  NAL+  +++ G + +   LF K+  +  VS+N+ I  ++ +GF  E   +  +
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 147 M--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           M  +++  E  + T ++ L AC +  +L   + +HG  +  +      + NA    YAK 
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  A  +F  MN +++ SWN +I G+ +NG P K +D + EM  LG+ PD+ ++ ++L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 265 GACFQTGRIDDA----------------------------------GR-LFHVIKEKDNV 289
            AC + G +                                     GR  F  + +K++V
Sbjct: 525 LACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSV 584

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           CW  M+ GY+QN    +AL LF +MLS+ + PD+ +I+S++ +C++L++L  G+ VH  A
Sbjct: 585 CWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFA 644

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +   + +D  V+ +L+DMY K G    +  +FN +  + V SWN MI G+  +GQ  +A+
Sbjct: 645 LKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAV 704

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L++ + + + +PD FTF+ VL AC HA L   G N+   +  ++ + P L+HYAC+I++
Sbjct: 705 ELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDM 764

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  +++A++ I  +P +P++ IWS+LLS      D++ GE  A  L  LE   A  Y
Sbjct: 765 LGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSY 824

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I+LSN+YA  G+W+ V  +R  MK  +++K    SWIE+  KV+ F++ + ++P ++ I 
Sbjct: 825 ILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIR 884

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
           +  ++L K++ E G++P+   VLH+ +E EK K +  HSEK+A+ +  +    G T +RI
Sbjct: 885 KMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTT-LRI 943

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R+C DCH   K+ S    R I++RD+ RFHHF  G CSC D W
Sbjct: 944 SKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 245/543 (45%), Gaps = 80/543 (14%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NA+++ + + G + +   LFDKMP ++ +S+N+ I GF+  GF  EA + F  
Sbjct: 242 IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRS 301

Query: 147 MQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           + +  D   P   T V+ L  C+   ++  G  IHG  V   L   + V NAL DMY+K 
Sbjct: 302 LLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKC 361

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM----QLLGLNPDEVTV 260
           G + +A  LF ++ N+++VSWN MI  Y + G   +  DL ++M    +L+ +N  EVT+
Sbjct: 362 GCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN--EVTI 419

Query: 261 SNILGACFQ-----------------------------------TGRIDDAGRLFHVIKE 285
            N+L AC +                                    G +  A  +F  +  
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           K    W  +I G+ QNG    AL  + EM    + PD FSI S++ +C +L  L +G+ +
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG  +  G++ +  V+ +L+ +Y  C       T F  M  +N V WN+M++GY+QN   
Sbjct: 540 HGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELP 599

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-------------QNHFDSISA 452
            EAL+L+ ++L + L+PD     S+L AC        G             +++F + S 
Sbjct: 600 NEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSL 659

Query: 453 VHGITPS--LDH---------------YACMINLLGRSSDVDKAVDLIKSLPH---KPNS 492
           +     S  L H               +  MI   G     +KAV+L + +     +P+ 
Sbjct: 660 MDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDR 719

Query: 493 LIWSTLLSVCAMKGDIKHG---EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
             +  +L  C   G +  G       + L++LEP     Y  + +M    GR  +  +  
Sbjct: 720 FTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEP-ELEHYACVIDMLGRAGRLNEALNFI 778

Query: 550 SSM 552
           + M
Sbjct: 779 NEM 781



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 215/465 (46%), Gaps = 71/465 (15%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  +EA   L+  C +  +VE+ ++L   + ++        L+ RL+  Y+  G    +R
Sbjct: 104 AQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESR 163

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +FD++  +++  WNAL+S + R+        L+D                        E
Sbjct: 164 LVFDRLLNKNLFQWNALVSGYVRN-------ELYD------------------------E 192

Query: 140 ALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           A+  F  +     F+P ++T    + AC    D+  GK +HG  V   L  ++FV NA+ 
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL--GLNPD 256
            +Y K G +D+A  LFD+M  +NL+SWN +I G+ +NG   +    F+ +     GL PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 257 EVTVSNILGACFQTGRID-----------------------------------DAGRLFH 281
             T+  +L  C   G +D                                   +A  LF 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASL 339
            I+ K  V W +MI  Y++ G   +   L  +M  E+  +  ++ +I +++ +C + + L
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESEL 432

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
              + +HG ++        L+++A I  Y KCG    A  VF  M T++V SWN++I G+
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGH 492

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           AQNG  ++AL  Y ++ +  + PD F+ VS+L AC    L + G+
Sbjct: 493 AQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 140/303 (46%), Gaps = 44/303 (14%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
             L+L C R+  ++  K +   +  N  E N+ F+   LL  Y    K FY R  F+ M 
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNS-FVAVSLLSLYFHCSKPFYGRTYFETMG 579

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++ + WNA+LS                               G++      EAL +F +
Sbjct: 580 DKNSVCWNAMLS-------------------------------GYSQNELPNEALSLFRQ 608

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  D  EP +    S L AC+QL  L  GK++H   +  +L  + FV  +L DMYAK G 
Sbjct: 609 MLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF 668

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  ++ +F+R+N + + SWN+MI+G+  +GQ  K ++LF++M+     PD  T   +L A
Sbjct: 669 LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 267 CFQTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
           C   G + +          L+ +  E ++      ++G  + G+  +AL   NEM  E  
Sbjct: 729 CCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG--RAGRLNEALNFINEMPEE-- 784

Query: 320 RPD 322
            PD
Sbjct: 785 -PD 786



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 160/307 (52%), Gaps = 23/307 (7%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           LN   +T+ +I G   ++  + D  RL +    K+   W  ++ GY +N   ++A+  F 
Sbjct: 145 LNTRLITMYSICGYPLESRLVFD--RLLN----KNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 313 EMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           E++S  + +PD F+   ++ +C     ++ G+ VHG AV +G+  DL V +A+I +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ--ENLKPDSFTFVS 429
           G  D+A  +F+ MP +N++SWNS+I G+++NG  LEA   +  LL+  + L PD  T V+
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSL----DHYAC--MINLLGRSSDVDKAVDLI 483
           +L  C        G+ + D    +HG+   L    +   C  +I++  +   + +A  L 
Sbjct: 319 LLPVC-------SGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + + +K + + W++++   + +G +       R ++  E +     + + N+  AC    
Sbjct: 372 RKIENK-SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 544 DVASIRS 550
           ++ S+R+
Sbjct: 431 ELLSLRA 437


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/623 (35%), Positives = 342/623 (54%), Gaps = 60/623 (9%)

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVS---ALNACAQLLDLRRGKQIHGKIVVGNLG 188
           A++G    A+ +F +M+     P      S   AL +CA L        +H   +     
Sbjct: 23  ASQGQFLHAISLFLQMRAS-VAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSF 81

Query: 189 GNVFVRNALTDMYAK----------------GG----EIDKARWLFDRMNNRNLVSWNLM 228
            + F  NAL ++  K                GG      +  R +FD M  R+ VSWN +
Sbjct: 82  ADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTL 141

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GACFQTG- 271
           I G  ++ + ++ + + +EM   G  PD  T+S +L                G   + G 
Sbjct: 142 ILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGF 201

Query: 272 ------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                             ++D + ++F    + D V W +M+ GY QNG  E+AL +F  
Sbjct: 202 DNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRR 261

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           ML   VRP   + SS++ +   L+ L  G+ +H   +    +D++ +SS+LIDMYCKCG 
Sbjct: 262 MLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGN 321

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D A  VFN + + ++VSW +MI GYA +G   EA  L++++   N+KP+  TF++VL+A
Sbjct: 322 VDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTA 381

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L + G  +F+S+S  +G  PSL+H A + + LGR+ D+D+A + I  +  KP S 
Sbjct: 382 CSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSS 441

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +WSTLL  C +  +    E  A+ +FELEP + G +++LSNMY+A GRW + A +R SM+
Sbjct: 442 VWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMR 501

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            K +KK  A SWIE+ NK+H F++ D++HP  + I + L+   +++   G+ PN + VL 
Sbjct: 502 IKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQ 561

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +EE+K + +C HSEKLA+ + +I  P G T IR+MKN+RVC DCH+  KF S I+ R 
Sbjct: 562 DIEEEQKREVLCGHSEKLAIVFGIISTPPGTT-IRVMKNLRVCVDCHIATKFISKIVARE 620

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I++RD NRFH F  GNCSC D W
Sbjct: 621 IVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 180/370 (48%), Gaps = 45/370 (12%)

Query: 103 SGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162
           S + + +R +FD+M  RD+VS+NT I G A     +EAL +   M +D F P  +T  + 
Sbjct: 117 SAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTV 176

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L   A+  D++RG  +HG  +      +VFV ++L DMYA   ++D +  +FD  ++ + 
Sbjct: 177 LPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDA 236

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---------------- 266
           V WN M++GY +NG  ++ + +F+ M   G+ P  VT S+++ A                
Sbjct: 237 VLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAY 296

Query: 267 --------------------CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                               C + G +D A R+F+ I+  D V WT MI+GY  +G   +
Sbjct: 297 LIRARFNDNIFISSSLIDMYC-KCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTE 355

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALI 365
           A +LF  M   +V+P+  +  +V+++C+    + +G +  +  +   G    L   +AL 
Sbjct: 356 AFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALA 415

Query: 366 DMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           D   + G  D+A+   + M   PT +V  W++++     +   + A  +  K+ +  L+P
Sbjct: 416 DTLGRAGDLDEAYNFISEMKIKPTSSV--WSTLLRACRVHKNTVLAEEVAKKIFE--LEP 471

Query: 423 DSFTFVSVLS 432
            S     +LS
Sbjct: 472 KSMGSHVILS 481



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 139/292 (47%), Gaps = 17/292 (5%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           A   +R+  D +  R   +    +  L+L C      + A  +   M  + + P+T F  
Sbjct: 119 AYESMRKVFDEMLERDAVS----WNTLILGCAEHKRHQEALSMVREMWRDGFMPDT-FTL 173

Query: 63  NRLLHFYAKSGKL--------FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           + +L  +A+   +        +  ++ FD     D+   ++L+  +A    +     +FD
Sbjct: 174 STVLPIFAECADIKRGMVVHGYAIKNGFDN----DVFVGSSLIDMYANCTQMDYSMKVFD 229

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                D+V +N+ +AG+A  G   EAL +F RM +    P   T  S + A   L  LR 
Sbjct: 230 SFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRL 289

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GKQ+H  ++      N+F+ ++L DMY K G +D AR +F+ + + ++VSW  MI GY  
Sbjct: 290 GKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYAL 349

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           +G   +   LF+ M+L  + P+ +T   +L AC   G +D+  + F+ +  +
Sbjct: 350 HGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQ 401


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/625 (32%), Positives = 351/625 (56%), Gaps = 49/625 (7%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +A+ +   +P  D    +AL+  +A+ GS ++ + +F+ +  R+SVS+   I G  
Sbjct: 279 GKQLHAK-VIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSL 337

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                 +++++F++M+ +      +   + ++ C   +DL  G+Q+H   +       + 
Sbjct: 338 QYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIV 397

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V N+L  +YAK G++  A ++F  M+ R++VSW  MI+ Y                    
Sbjct: 398 VSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAY-------------------- 437

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           Q G I  A   F  +  ++ + W  M+  Y Q+G EED L +++
Sbjct: 438 ---------------SQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYS 482

Query: 313 EMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            MLS+ DV PD  +  ++   CA + +   G  + G  V  G+  ++ V++A I MY KC
Sbjct: 483 AMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKC 542

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   +A  +F+++  ++VVSWN+MI GY+Q+G   +A   +D +L +  KPD  ++V+VL
Sbjct: 543 GRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVL 602

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           S C H+ L + G+ +FD ++ VHGI+P L+H++CM++LLGR+  + +A DLI  +P KP 
Sbjct: 603 SGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPT 662

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
           + +W  LLS C + G+ +  E+AA+H+FEL+  ++G Y++L+ +Y+  G+ +D A +R  
Sbjct: 663 AEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKL 722

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
           M+ K +KK   YSW+E++NKVH F ++D +HP+   I  ++ +L++K+   G+       
Sbjct: 723 MRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV------ 776

Query: 612 LHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
                  E  +S  +HSEKLA+A+ ++  P    PI IMKN+R+CGDCH  +K  S +  
Sbjct: 777 -----RTESPRSEIHHSEKLAVAFGIMSLP-AWMPIHIMKNLRICGDCHTVIKLISSVTD 830

Query: 672 RTIILRDSNRFHHFVGGNCSCKDNW 696
           R  ++RD  RFHHF  G+CSC D W
Sbjct: 831 REFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 216/462 (46%), Gaps = 66/462 (14%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFD---KMPLRDIISWNALLSAHARSGSVQDLRALF 113
           +  FL N LLH Y   G L  AR L     K P  ++I+ N +++ +A+ GS+ D   LF
Sbjct: 53  SAVFLQNTLLHAYLSCGALSDARRLLRADIKEP--NVITHNIMMNGYAKQGSLSDAEELF 110

Query: 114 DKMPIRDSVSYNTAIAGFANKGFS---------RE-ALQVFSRMQKDRF--EPTDYTHVS 161
           D+MP RD  S+NT ++  +    S         RE A Q+     K  F  +P   T + 
Sbjct: 111 DRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALV 170

Query: 162 ALNACAQLLDL--RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
            +      +D   R   QI            +F RN++   YAK   ID A   F+ M  
Sbjct: 171 DMFVRCGYVDFASRLFSQIERP--------TIFCRNSMLAGYAKLYGIDHAIEYFEDMAE 222

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------- 268
           R++VSWN+MI+   ++G+ ++ + L  EM   G+  D  T ++ L AC            
Sbjct: 223 RDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQL 282

Query: 269 ------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                   + G   +A R+F+ ++++++V WT +I G  Q    
Sbjct: 283 HAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECF 342

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
             ++ LFN+M +E +  D+F++++++S C     L  G+ +H   +  G +  ++VS++L
Sbjct: 343 SKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSL 402

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           I +Y KCG   +A  VF+ M  R++VSW SMI  Y+Q G  ++A   +D +   N    +
Sbjct: 403 ISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRN----A 458

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
            T+ ++L A +     E G   + ++ +   +TP    Y  +
Sbjct: 459 ITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 500



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 139/263 (52%), Gaps = 5/263 (1%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  + A   L+  C    D+ L ++L S + L         + N L+  YAK G L  A 
Sbjct: 358 AIDQFALATLISGCFNRMDLCLGRQLHS-LCLKSGHNRAIVVSNSLISLYAKCGDLQNAE 416

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +F  M  RDI+SW ++++A+++ G++   R  FD M  R+++++N  +  +   G   +
Sbjct: 417 FVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEED 476

Query: 140 ALQVFSRM--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            L+++S M  QKD   P   T+V+    CA +   + G QI G  V   L  NV V NA 
Sbjct: 477 GLKMYSAMLSQKD-VTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAA 535

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MY+K G I +A+ LFD +N +++VSWN MI+GY ++G  K+    F +M   G  PD 
Sbjct: 536 ITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDY 595

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           ++   +L  C  +G + + G+L+
Sbjct: 596 ISYVAVLSGCSHSGLVQE-GKLY 617



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 208/472 (44%), Gaps = 88/472 (18%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL------------------------ 197
           AL +C     L   + +HG++V   L   VF++N L                        
Sbjct: 26  ALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEP 85

Query: 198 --------TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK-NGQPKKCIDL-FQE 247
                    + YAK G +  A  LFDRM  R++ SWN ++S   +  G    C  L  +E
Sbjct: 86  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCRE 145

Query: 248 M--QLLGL--------NPD-EVTVSNILGACFQTGRIDDAGRLFHVIK------------ 284
           +  QLLGL        +PD E  + ++   C   G +D A RLF  I+            
Sbjct: 146 LAPQLLGLFWKFDFWGDPDVETALVDMFVRC---GYVDFASRLFSQIERPTIFCRNSMLA 202

Query: 285 -------------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                              E+D V W  MI   +Q+G+  +AL L  EM  + VR D  +
Sbjct: 203 GYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTT 262

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            +S +++CA+L SL  G+ +H K +      D  V+SALI++Y KCG   +A  VFN + 
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQ 322

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQ 444
            RN VSW  +I G  Q     +++ L++++  E +  D F   +++S C +  DL    Q
Sbjct: 323 DRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQ 382

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            H   + + H     + +   +I+L  +  D+  A  +  S+  + + + W+++++  + 
Sbjct: 383 LHSLCLKSGHNRAIVVSN--SLISLYAKCGDLQNAEFVFSSMSER-DIVSWTSMITAYSQ 439

Query: 505 KGDIKHGEMAARHLFE-LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            G+I    + AR  F+ +   NA  +  +   Y   G  ED   + S+M S+
Sbjct: 440 IGNI----IKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQ 487



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 1/97 (1%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM- 383
           +++  + SC    +L   + +HG+ V +G+   + + + L+  Y  CG   DA  +    
Sbjct: 22  ALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRAD 81

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           +   NV++ N M+NGYA+ G   +A  L+D++ + ++
Sbjct: 82  IKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDV 118


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/578 (34%), Positives = 325/578 (56%), Gaps = 37/578 (6%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT   + + + ACAQ  +L   +++H  +      G+ F+ N+L  +Y K G + +AR +
Sbjct: 49  PTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKV 108

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD M  +++VSW  +I+GY +N  P++ I L   M      P+  T +++L A       
Sbjct: 109 FDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS 168

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +D A  +F  +  K+ V W  +I G+
Sbjct: 169 GIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            + G  E AL+ F EML        F+ SSV SS A+L +L  G+ VH   +        
Sbjct: 229 ARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTA 288

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
              + L+DMY K G   DA  VF+ +  +++V+WN+M+  +AQ G   EA++ ++++ + 
Sbjct: 289 FAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            +  +  TF+ +L+AC H  L + G+ +F+ +   + + P +DH+  ++ LLGR+  ++ 
Sbjct: 349 GIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKE-YDLEPEIDHFVTVVALLGRAGLLNF 407

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+  I  +P +P + +W  LL+ C M  + K G+ AA H+FEL+P ++GP ++L N+YA+
Sbjct: 408 ALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYAS 467

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W+  A +R  MK+  VKK  A SW+E++N VH FV+ D THP  E IY+   ++ KK
Sbjct: 468 TGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKK 527

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+ P+   VL    ++E+  ++ YHSEKLALA+ LI+ P G T IRIMKNIR+CGD
Sbjct: 528 IRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGAT-IRIMKNIRICGD 586

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH   K+ S + GR I++RD+NRFHHF  G+CSC D W
Sbjct: 587 CHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 158/318 (49%), Gaps = 13/318 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR G +    A+FDK+  ++ VS+N  I+GFA KG    AL  F+ M 
Sbjct: 186 DVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEML 245

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ FE T +T+ S  ++ A+L  L +GK +H  ++        F  N L DMYAK G + 
Sbjct: 246 RNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMI 305

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDR+++++LV+WN M++ + + G  K+ +  F+EM+  G+  ++VT   IL AC 
Sbjct: 306 DARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS 365

Query: 269 QTGRIDDAGRLFHVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +  R F ++KE D       + T++    + G    AL+   +M    + P   
Sbjct: 366 HGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKM---PIEPTAA 422

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++++C    +   GQ        L  DD       L ++Y   G  D A  V  +M
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFELDPDDS-GPPVLLYNIYASTGQWDAAARVRRIM 481

Query: 385 PTRNV-----VSWNSMIN 397
            T  V      SW  M N
Sbjct: 482 KTTGVKKEPACSWVEMEN 499



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 166/370 (44%), Gaps = 73/370 (19%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D L +   A T   Y   +  C +  ++E A+++ +H+  + +  +  FL N L+H Y 
Sbjct: 39  LDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDA-FLDNSLIHLYC 97

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G                               SV + R +FD+M  +D VS+ + IAG
Sbjct: 98  KCG-------------------------------SVLEARKVFDEMRRKDMVSWTSLIAG 126

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A      EA+ +   M K RF+P  +T  S L A     D   G+QIH   V  +   +
Sbjct: 127 YAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHED 186

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V+V +AL DMYA+ G +D A  +FD+++++N VSWN +ISG+ + G  +  +  F EM  
Sbjct: 187 VYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLR 246

Query: 251 LGLNPDEVTVSNI------LGACFQ-----------------------------TGRIDD 275
            G      T S++      LGA  Q                             +G + D
Sbjct: 247 NGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMID 306

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  + +KD V W TM+  + Q G  ++A+  F EM    +  ++ +   ++++C+ 
Sbjct: 307 ARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS- 365

Query: 336 LASLYHGQVV 345
                HG +V
Sbjct: 366 -----HGGLV 370



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 7/161 (4%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  AT   Y+ +     R+  +E  K + +HM +   +  T F  N LL  YAKSG +  
Sbjct: 248 GFEATHFTYSSVFSSIARLGALEQGKWVHAHM-IKSRQKMTAFAGNTLLDMYAKSGSMID 306

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFAN 133
           AR +FD++  +D+++WN +L+A A+ G  ++  + F++M       + V++   +   ++
Sbjct: 307 ARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSH 366

Query: 134 KGFSREALQVFSRMQKDRFEPT--DYTHVSALNACAQLLDL 172
            G  +E  + F  M++   EP    +  V AL   A LL+ 
Sbjct: 367 GGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNF 407


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 236/671 (35%), Positives = 365/671 (54%), Gaps = 100/671 (14%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYN 125
           F+A   KL +  D F +         NA++  +AR G +   R +FD++P   R    +N
Sbjct: 117 FHAHVLKLGHGSDAFVR---------NAVIDMYARLGPIGHARKVFDEIPDYERKVADWN 167

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             ++G+       +A  +F  M +                                    
Sbjct: 168 AMVSGYWKWESEGQAQWLFDVMPER----------------------------------- 192

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               NV    A+   YAK  +++ AR  FD M  R++VSWN M+SGY +NG  ++ + LF
Sbjct: 193 ----NVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLF 248

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
            EM   G+ PDE T   ++ AC                                    + 
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKF 308

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSISSV 329
           G +D A +LF+ +  ++ V W +MI GY QNG+   A+ LF EM++ + + PD+ ++ SV
Sbjct: 309 GDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 368

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS----SALIDMYCKCGVTDDAWTVFNMMP 385
           +S+C  L +L  G  V    V    ++ + +S    +A+I MY +CG  +DA  VF  M 
Sbjct: 369 ISACGHLGALELGNWV----VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMA 424

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
           TR+VVS+N++I+G+A +G  +EA+ L   + +  ++PD  TF+ VL+AC HA L E G+ 
Sbjct: 425 TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK 484

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
            F+SI       P++DHYACM++LLGR  +++ A   ++ +P +P++ ++ +LL+   + 
Sbjct: 485 VFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIH 539

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
             ++ GE+AA  LFELEP N+G +I+LSN+YA+ GRW+DV  IR +MK   VKK   +SW
Sbjct: 540 KQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSW 599

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           +E   K+HKF+  DR+H  ++ IY+ L +L KK++EAG+  +   VL D +EEEK + + 
Sbjct: 600 VEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVG 659

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+ Y L+    G   IR++KN+RVC DCH  +K  S + GR II+RD+NRFH F
Sbjct: 660 THSEKLAICYALLVSEAGAV-IRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCF 718

Query: 686 VGGNCSCKDNW 696
             G CSCKD W
Sbjct: 719 NDGLCSCKDYW 729



 Score =  181 bits (460), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 123/401 (30%), Positives = 203/401 (50%), Gaps = 47/401 (11%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N ++  Y K      A+ LFD MP R++I+W A+++ +A+   ++  R  FD MP R  V
Sbjct: 167 NAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVV 226

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N  ++G+A  G + EAL++F  M     EP + T V+ ++AC+   D      +   +
Sbjct: 227 SWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTL 286

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  N FVR AL DMYAK G++D AR LF+ M  RN+V+WN MI+GY +NGQ    I
Sbjct: 287 HQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 346

Query: 243 DLFQEM-QLLGLNPDEVTVSNILGAC--------------FQT----------------- 270
           +LF+EM     L PDEVT+ +++ AC              F T                 
Sbjct: 347 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 406

Query: 271 ----GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
               G ++DA R+F  +  +D V + T+I G+  +G   +A+ L + M    + PD+ + 
Sbjct: 407 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 466

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA-LIDMYCKCGVTDDAWTVFNMMP 385
             V+++C+     + G +  G+ V   + D  +   A ++D+  + G  +DA      MP
Sbjct: 467 IGVLTACS-----HAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTMERMP 521

Query: 386 TR-NVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDS 424
              +   + S++N    + Q +L  LA  +KL +  L+PD+
Sbjct: 522 MEPHAGVYGSLLNASRIHKQVELGELAA-NKLFE--LEPDN 559



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 142/311 (45%), Gaps = 44/311 (14%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRL-----QSHMDLNFYEPN 57
           A+  LR   D + + G    E  +  ++  C+   D  LA  L     Q  + LN     
Sbjct: 241 AEEALR-LFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLN----- 294

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
             F+   LL  YAK G L  AR LF+ MP R++++WN++                     
Sbjct: 295 -CFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSM--------------------- 332

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                     IAG+A  G S  A+++F  M    +  P + T VS ++AC  L  L  G 
Sbjct: 333 ----------IAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGN 382

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
            +   +    +  ++   NA+  MY++ G ++ A+ +F  M  R++VS+N +ISG+  +G
Sbjct: 383 WVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHG 442

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
              + I+L   M+  G+ PD VT   +L AC   G +++  ++F  IK+     +  M+ 
Sbjct: 443 HGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVD 502

Query: 297 GYTQNGKEEDA 307
              + G+ EDA
Sbjct: 503 LLGRVGELEDA 513



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 165/391 (42%), Gaps = 58/391 (14%)

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           LF+   N N+  +  M+  Y       K + ++++MQ  G+ PD   V  IL     TG 
Sbjct: 56  LFNSTLNPNVFVFTSMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAF-VYPILIKSAGTGG 114

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I     +  +    D      +I  Y + G    A  +F+E+      PD       V+ 
Sbjct: 115 IGFHAHVLKLGHGSDAFVRNAVIDMYARLGPIGHARKVFDEI------PD---YERKVAD 165

Query: 333 CAKLASLYHGQVVHGKAVVL---GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
              + S Y      G+A  L     + +++  +A++  Y K    + A   F+ MP R+V
Sbjct: 166 WNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSV 225

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           VSWN+M++GYAQNG   EAL L+D+++   ++PD  T+V+V+SAC       RG     +
Sbjct: 226 VSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISAC-----SSRGDPCLAA 280

Query: 450 --ISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHK---------------- 489
             +  +H     L+ +    ++++  +  D+D A  L  ++P +                
Sbjct: 281 SLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNG 340

Query: 490 -------------------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPY 529
                              P+ +   +++S C   G ++ G    R L E +  ++   +
Sbjct: 341 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 400

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
             +  MY+ CG  ED   +   M +++V  +
Sbjct: 401 NAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 431


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 352/650 (54%), Gaps = 49/650 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  +A+ G +     +FD MP R+ VS+   + GF + G +RE L++F  M+     
Sbjct: 239 NNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTS 298

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T  + L AC      R G QIHG  V     G+  V N+L  MY+KG     AR +
Sbjct: 299 PNEFTLSATLKACGG--GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRV 356

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTG- 271
           FD + +RNL +WN MISGY   GQ +  + +F+EMQ      PDE T +++L AC   G 
Sbjct: 357 FDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGA 416

Query: 272 ------------------------------------RIDDAGRLFHVIKEKDNVCWTTMI 295
                                               R+  A ++F  ++ ++ + WTT+I
Sbjct: 417 AREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVI 476

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
           VG+ Q G+ ++A+ LF    S  VR D   +SSVV+  A  A +  G+ VH         
Sbjct: 477 VGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAG 536

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V+++L+DMY KCG+T +A   F  MP RNVVSW +MING  ++G   EA+ L++++
Sbjct: 537 LDVSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEM 596

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
             E ++ D   ++++LSAC H+ L +  + +F  I     + P  +HYACM++LLGR+ +
Sbjct: 597 QAEGVEADEVAYLALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGE 656

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           + +A +LI S+P +P   +W TLLS C +  D+  G      L  ++  N   Y+MLSN+
Sbjct: 657 LREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNI 716

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV-SEDRTHPETEIIYEELSK 594
            A  G W +   IR +M+ K ++K    SW E+D +VH F    D  HP+   I   L +
Sbjct: 717 LAEAGEWRECQGIRGAMRRKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALRE 776

Query: 595 LIKKLQEA-GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP------- 646
           +  +++E  G+S + +  LHD  EE +V+S+  HSE+LA+   L++   G          
Sbjct: 777 VEARMRERLGYSGDARCALHDVDEESRVESLREHSERLAVGLWLLRDGTGDDGGGGGGEV 836

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+ KN+RVCGDCH F+K  S ++ R +++RD+NRFH F  G CSC+D W
Sbjct: 837 VRVYKNLRVCGDCHEFLKGLSAVVRRVVVVRDANRFHRFQNGACSCRDYW 886



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 199/408 (48%), Gaps = 46/408 (11%)

Query: 152 FEPTDYTHVSA--LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           F P +   + A  L A A+   LR G Q+H  ++    G +  + N L DMYAK G++  
Sbjct: 194 FLPMERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHM 253

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-- 267
           A  +FD M  RN+VSW  ++ G+L +G+ ++C+ LF EM+  G +P+E T+S  L AC  
Sbjct: 254 AGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGG 313

Query: 268 ------------------------------FQTGR-IDDAGRLFHVIKEKDNVCWTTMIV 296
                                         +  GR   DA R+F VI  ++   W +MI 
Sbjct: 314 GTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMIS 373

Query: 297 GYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
           GY   G+  D+L++F EM    D +PD+F+ +S++ +C+ L +   G  VH    V GV 
Sbjct: 374 GYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVS 433

Query: 356 --DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              + +++ AL+D+Y KC     A  VF+ +  RN + W ++I G+AQ GQ  EA+ L+ 
Sbjct: 434 PASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFR 493

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGR 472
           +     ++ D     SV++      L E+G Q H  +     G+  S+ +   ++++  +
Sbjct: 494 RFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVAN--SLVDMYLK 551

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
                +A    + +P + N + W+ +++     G   HG  A   LFE
Sbjct: 552 CGLTGEAGRRFREMPAR-NVVSWTAMINGVGKHG---HGREAI-DLFE 594



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 141/347 (40%), Gaps = 54/347 (15%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP-NTTFLHNRLLHFYAKSGKLFYARDL 81
           E  +  L+  C+ +       ++ + M +    P +   L   LL  Y K  +L  A  +
Sbjct: 401 EFTFASLLKACSGLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQV 460

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD +  R+ I W  ++  HA+ G V                               +EA+
Sbjct: 461 FDGLERRNAIQWTTVIVGHAQEGQV-------------------------------KEAM 489

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F R          +   S +   A    + +GKQ+H        G +V V N+L DMY
Sbjct: 490 CLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMY 549

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G   +A   F  M  RN+VSW  MI+G  K+G  ++ IDLF+EMQ  G+  DEV   
Sbjct: 550 LKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYL 609

Query: 262 NILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
            +L AC  +G +D+  R F  I        K +   C   ++ G     +E   LI    
Sbjct: 610 ALLSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLL-GRAGELREAKELI---- 664

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA---VVLGVDDD 357
            LS  + P      +++S+C       H  V  G+    V+L VD D
Sbjct: 665 -LSMPMEPTVGVWQTLLSACR-----VHKDVAVGREVGDVLLAVDGD 705


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/647 (33%), Positives = 367/647 (56%), Gaps = 38/647 (5%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + +++  NAL+  +++ G + +   LF K+  +  VS+N+ I  ++ +GF  E   +  +
Sbjct: 345 VHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 147 M--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           M  +++  E  + T ++ L AC +  +L   + +HG  +  +      + NA    YAK 
Sbjct: 405 MWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKC 464

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  A  +F  MN +++ SWN +I G+ +NG P K +D + EM  LG+ PD+ ++ ++L
Sbjct: 465 GSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLL 524

Query: 265 GACFQTGRIDDAGRL-----------------------FHVIK------------EKDNV 289
            AC + G +     +                       FH  K            +K++V
Sbjct: 525 LACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSV 584

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           CW  M+ GY+QN    +AL LF +MLS+ + PD+ +I+S++ +C++L++L  G+ VH  A
Sbjct: 585 CWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFA 644

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +   + +D  V+ +L+DMY K G    +  +FN +  + V SWN MI G+  +GQ  +A+
Sbjct: 645 LKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAV 704

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L++ + + + +PD FTF+ VL AC HA L   G N+   +  ++ + P L+HYAC+I++
Sbjct: 705 ELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDM 764

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  +++A++ I  +P +P++ IWS+LLS      D++ GE  A  L  LE   A  Y
Sbjct: 765 LGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSY 824

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I+LSN+YA  G+W+ V  +R  MK  +++K    SWIE+  KV+ F++ + ++P ++ I 
Sbjct: 825 ILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSNPSSDEIR 884

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
           +  ++L K++ E G++P+   VLH+ +E EK K +  HSEK+A+ +  +    G T +RI
Sbjct: 885 KMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFLNTKEGTT-LRI 943

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R+C DCH   K+ S    R I++RD+ RFHHF  G CSC D W
Sbjct: 944 SKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/543 (27%), Positives = 245/543 (45%), Gaps = 80/543 (14%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           + D+   NA+++ + + G + +   LFDKMP ++ +S+N+ I GF+  GF  EA + F  
Sbjct: 242 IMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRS 301

Query: 147 MQK--DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           + +  D   P   T V+ L  C+   ++  G  IHG  V   L   + V NAL DMY+K 
Sbjct: 302 LLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKC 361

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM----QLLGLNPDEVTV 260
           G + +A  LF ++ N+++VSWN MI  Y + G   +  DL ++M    +L+ +N  EVT+
Sbjct: 362 GCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVN--EVTI 419

Query: 261 SNILGACFQ-----------------------------------TGRIDDAGRLFHVIKE 285
            N+L AC +                                    G +  A  +F  +  
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           K    W  +I G+ QNG    AL  + EM    + PD FSI S++ +C +L  L +G+ +
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEI 539

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG  +  G++ +  V+ +L+ +Y  C       T F  M  +N V WN+M++GY+QN   
Sbjct: 540 HGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELP 599

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-------------QNHFDSISA 452
            EAL+L+ ++L + L+PD     S+L AC        G             +++F + S 
Sbjct: 600 NEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSL 659

Query: 453 VHGITPS--LDH---------------YACMINLLGRSSDVDKAVDLIKSLPH---KPNS 492
           +     S  L H               +  MI   G     +KAV+L + +     +P+ 
Sbjct: 660 MDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDR 719

Query: 493 LIWSTLLSVCAMKGDIKHG---EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
             +  +L  C   G +  G       + L++LEP     Y  + +M    GR  +  +  
Sbjct: 720 FTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEP-ELEHYACVIDMLGRAGRLNEALNFI 778

Query: 550 SSM 552
           + M
Sbjct: 779 NEM 781



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 215/465 (46%), Gaps = 71/465 (15%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  +EA   L+  C +  +VE+ ++L   + ++        L+ RL+  Y+  G    +R
Sbjct: 104 AQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESR 163

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            +FD++  +++  WNAL+S + R+        L+D                        E
Sbjct: 164 LVFDRLLNKNLFQWNALVSGYVRN-------ELYD------------------------E 192

Query: 140 ALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           A+  F  +     F+P ++T    + AC    D+  GK +HG  V   L  ++FV NA+ 
Sbjct: 193 AIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMI 252

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL--GLNPD 256
            +Y K G +D+A  LFD+M  +NL+SWN +I G+ +NG   +    F+ +     GL PD
Sbjct: 253 ALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPD 312

Query: 257 EVTVSNILGACFQTGRID-----------------------------------DAGRLFH 281
             T+  +L  C   G +D                                   +A  LF 
Sbjct: 313 VATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFR 372

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASL 339
            I+ K  V W +MI  Y++ G   +   L  +M  E+  +  ++ +I +++ +C + + L
Sbjct: 373 KIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESEL 432

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
              + +HG ++        L+++A I  Y KCG    A  VF  M T++V SWN++I G+
Sbjct: 433 LSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGH 492

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           AQNG  ++AL  Y ++ +  + PD F+ VS+L AC    L + G+
Sbjct: 493 AQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 141/303 (46%), Gaps = 44/303 (14%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
             L+L C R+  ++  K +   +  N  E N+ F+   LL  Y    K FY R  F++M 
Sbjct: 521 VSLLLACGRLGLLQYGKEIHGFVLRNGLEMNS-FVAVSLLSLYFHCSKPFYGRTYFERMG 579

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++ + WNA+LS                               G++      EAL +F +
Sbjct: 580 DKNSVCWNAMLS-------------------------------GYSQNELPNEALSLFRQ 608

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  D  EP +    S L AC+QL  L  GK++H   +  +L  + FV  +L DMYAK G 
Sbjct: 609 MLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGF 668

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  ++ +F+R+N + + SWN+MI+G+  +GQ  K ++LF++M+     PD  T   +L A
Sbjct: 669 LGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA 728

Query: 267 CFQTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
           C   G + +          L+ +  E ++      ++G  + G+  +AL   NEM  E  
Sbjct: 729 CCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLG--RAGRLNEALNFINEMPEE-- 784

Query: 320 RPD 322
            PD
Sbjct: 785 -PD 786



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 160/307 (52%), Gaps = 23/307 (7%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           LN   +T+ +I G   ++  + D  RL +    K+   W  ++ GY +N   ++A+  F 
Sbjct: 145 LNTRLITMYSICGYPLESRLVFD--RLLN----KNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 313 EMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           E++S  + +PD F+   ++ +C     ++ G+ VHG AV +G+  DL V +A+I +Y KC
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKC 258

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ--ENLKPDSFTFVS 429
           G  D+A  +F+ MP +N++SWNS+I G+++NG  LEA   +  LL+  + L PD  T V+
Sbjct: 259 GFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVT 318

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSL----DHYAC--MINLLGRSSDVDKAVDLI 483
           +L  C        G+ + D    +HG+   L    +   C  +I++  +   + +A  L 
Sbjct: 319 LLPVC-------SGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILF 371

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + + +K + + W++++   + +G +       R ++  E +     + + N+  AC    
Sbjct: 372 RKIENK-SVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEES 430

Query: 544 DVASIRS 550
           ++ S+R+
Sbjct: 431 ELLSLRA 437


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/614 (36%), Positives = 339/614 (55%), Gaps = 44/614 (7%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS-YNTAIAGFAN---KGFSREALQ 142
           LR IIS++AL      SG +     L  +     +V  +NT I GF+     G    ++ 
Sbjct: 23  LRPIISFSAL----DPSGDIDYALLLLLRTSTPPTVFLFNTTIRGFSRARRPGSLLSSVL 78

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F RM      P ++T       C+  +    G+Q HG ++  +   +VFVRN++   Y+
Sbjct: 79  LFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYS 138

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
             G ++ ARW+FD  +  ++VSWN MI G                               
Sbjct: 139 VCGRLNDARWVFDESSELDVVSWNSMIDG------------------------------- 167

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
               C + G I +A  LF  + E++++ W  MI GY QNG+ ++AL LF EM   D  P+
Sbjct: 168 ----CIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQEPN 223

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
              + SV+S+C++L +L HG  VH       V  D ++S+ALIDMY KCG  D A   F+
Sbjct: 224 SAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFS 283

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
               R+V ++ + I+G A NG   EAL L++++  E + PD  ++++VL AC HA   E+
Sbjct: 284 TSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEK 343

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G ++F S+S VHGI P LDHYACM++LLGR+  +++A   + S+P KP+++IW  LL  C
Sbjct: 344 GFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGAC 403

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            + G+ + G+     L E +  + G YI+LSN+YA   + ED   +R +M+ + V +   
Sbjct: 404 RVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPG 463

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            S IE+   VH+F S DR+H +TE IY    +++K++++ G+   T+ V+ D +EEEK  
Sbjct: 464 CSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEA 523

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            I +HSEKLA+A+  +    G T +RI+KNIR+C DCH  +K  S +  R I +RD   F
Sbjct: 524 VIGHHSEKLAVAFGFLYTKSGST-LRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCF 582

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G CSCKD W
Sbjct: 583 HHFEEGLCSCKDYW 596



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 163/327 (49%), Gaps = 13/327 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +T L   C+     +L ++    +  N +E +  F+ N ++ FY+  G+L  AR +FD+ 
Sbjct: 95  FTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDV-FVRNSIIRFYSVCGRLNDARWVFDES 153

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
              D++SWN+++    R+G++ +  +LF KM  R+ +S+N  I+G+A  G  +EAL +F 
Sbjct: 154 SELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALALFR 213

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            MQ    EP     VS L+AC+QL  L  G  +H  I    +  +  +  AL DMYAK G
Sbjct: 214 EMQMLDQEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCG 273

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            ID A   F     R++ ++   ISG   NG  ++ + LF++M+  G++PD V+   +L 
Sbjct: 274 SIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLC 333

Query: 266 ACFQTGRIDDAGRLF------HVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
           AC   G ++     F      H I+ E D+      ++G     +E +  +      S  
Sbjct: 334 ACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFV-----ASMP 388

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVV 345
           ++PD     +++ +C    +   GQ V
Sbjct: 389 IKPDNVIWGALLGACRVYGNAEMGQRV 415


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/703 (32%), Positives = 373/703 (53%), Gaps = 17/703 (2%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   + +RG AA   A  + +  C R       + + +H            +   L   Y
Sbjct: 165 AFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMY 224

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS-------- 121
           A+   +  A  +  +     +++WNA+++   R G V D   L ++M  RD+        
Sbjct: 225 AEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDALELAERM-ARDAETSEAAEP 283

Query: 122 --VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
              ++NT ++G A  G  REAL V  RM +    P   T  S L + A    L  G ++H
Sbjct: 284 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 343

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              +   L  + +   AL DMYAK G +D A+ +FD + +RNL +WN +++G+   G   
Sbjct: 344 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFD 403

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295
           + ++L + M+   ++P+  T + ++      G    A  L   IK      + V WT++I
Sbjct: 404 RALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTSLI 463

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G    G  +D+   F+EM  + ++P   ++  ++ +CA LA L  G+ +H  A+    D
Sbjct: 464 SGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRAYD 523

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            +++VS+ALIDMY K G    A  VF  +  +N+V  N+M+ G A +GQ  EA AL+  +
Sbjct: 524 GEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFHDM 583

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +  LKPD  TF ++L+AC    L      + D + A +G+ P+ +H+ACM++LL R   
Sbjct: 584 WRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARRGY 643

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A+  I+  P +P +  W  LL+ CA+ G++   E AARHLF+LEP N+  Y+ + ++
Sbjct: 644 LDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMMSL 703

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT--HPETEIIYEELS 593
           Y     +++  S++ +MK++ V     +SW +    +H F  +  +  HPET  IY+E+S
Sbjct: 704 YEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDEMS 763

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L+ +++  G+ P+T  + +D  EEEK   +  H+EKLA+ Y LI+      P+R++KN 
Sbjct: 764 RLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSRAPVRVVKNT 823

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  +K  S + GR IILRD++RFHHFV G CSC D W
Sbjct: 824 RMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 866



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 197/469 (42%), Gaps = 36/469 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           LL    R  S + L A  D    +D+V +N  +A  A  G    A+  F  M+       
Sbjct: 118 LLERLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAAD 177

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            Y    AL+AC +      G+ +H   + VG +  +  V   L  MYA+G ++  A  + 
Sbjct: 178 GYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVL 237

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            R     +V+WN +I+  ++ G     ++L + M                    +     
Sbjct: 238 LRTAGAGVVAWNAVIACCVRLGLVDDALELAERMA-------------------RDAETS 278

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +A        E     W T++ G  ++G++ +AL +   ML + + PD  ++SS++ S A
Sbjct: 279 EAA-------EPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVA 331

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
              SL HG  VH   +  G+  D    +AL+DMY KCG  D A  VF+ +  RN+ +WNS
Sbjct: 332 NSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNS 391

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           ++ G+A  G    AL L + + +  + P+  T+  +++      L  +       I +  
Sbjct: 392 LVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSA- 450

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
           G+ P++  +  +I+      D   +      +     +P+ +    LL  CA    +  G
Sbjct: 451 GVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKG 510

Query: 512 EMAARHLFELEPINAGPYIM---LSNMYAACGRWEDVASIRSSMKSKNV 557
           +    H F L     G  ++   L +MYA  G       +   ++ KN+
Sbjct: 511 K--ELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNL 557


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/525 (38%), Positives = 319/525 (60%), Gaps = 8/525 (1%)

Query: 175 GKQIHGKIV-VGNLGGNVFVRNALTDMYAK--GGEIDKARWLFDRMNNRNLVSWNLMISG 231
           G  +H + +  G    ++FVR AL +MYAK   GEI  AR  FD    R++   N+M++ 
Sbjct: 66  GASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAA 125

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y+  G+  +   +F  M       D V+ + ++      G +  A  +F   +++D   W
Sbjct: 126 YVARGEVAEARKVFDGMS----GRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSW 181

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           ++MI  Y +    ++AL L+ EM    V PD  S+ SV+S+C+ + +L  G  VH     
Sbjct: 182 SSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVES 241

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             V+ D+ + +AL+DMY KCG  +++  VF+ MP ++V++W+SMI G A +G   +AL+L
Sbjct: 242 NRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSL 301

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           + +++ + L+P+  TF+ VL AC H  L   G+ +F S+S VHG+ P ++HY CM++LLG
Sbjct: 302 FSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLG 361

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  V++A++LI+S+  KP+ +IW TLL  C +  +++  E A   L  L+P+  G Y++
Sbjct: 362 RAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVL 421

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA    WE VA +R +++ +N+++    S IE +N VH+FVS DR+HP  E IY+ 
Sbjct: 422 LSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKM 481

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L +++ +L++AG+ P T LVL D  E+ K +++  HSEKLA+A+ L+  P   T +RI K
Sbjct: 482 LEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARST-LRITK 540

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R C DCH  +K  S    R +I+RD NRFHHF  G CSCKD W
Sbjct: 541 NLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 179/374 (47%), Gaps = 15/374 (4%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            FL N +L  Y   G++  AR +FD M  RD++SWN ++  +A  G V   R +FD    
Sbjct: 116 VFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRD 175

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD+ S+++ I+ +A    S+EAL+++  M+     P   + VS L+AC+ +  L  G ++
Sbjct: 176 RDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEV 235

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +    +  ++ +  AL DMYAK G+I+ +  +F  M  +++++W+ MI G   +G  
Sbjct: 236 HRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLG 295

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTT 293
              + LF EM   GL P+E+T   +L AC   G ++D  + F  + +   V      +  
Sbjct: 296 HDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGC 355

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+    + G  E+A+ L   M     +PD     +++ +C    ++   +    K  VL 
Sbjct: 356 MVDLLGRAGHVEEAMELIRSM---TFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLD 412

Query: 354 VDDD---LLVSSALIDMYCKCGVTDDAWTV----FNMMPTRNVVSWNSMINGYAQNGQDL 406
              D   +L+S+         GV +   T+       +P R+ + W + ++ +    +  
Sbjct: 413 PLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSH 472

Query: 407 EALALYDKLLQENL 420
             +    K+L+E +
Sbjct: 473 PRIEEIYKMLEEMM 486


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/574 (35%), Positives = 335/574 (58%), Gaps = 39/574 (6%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           Y   I GF + G   +A+Q++SRM  D   P +Y   S L AC   L LR G+++H + +
Sbjct: 115 YTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRAL 174

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              L  N  VR  + ++Y K GE+  AR +F+ M                          
Sbjct: 175 KLGLSSNRLVRLRIMELYGKCGELGDARRVFEEM-------------------------- 208

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQ-TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                      P++V  S ++ + +   G +++AG +F  ++ KD VCWT MI G+ +N 
Sbjct: 209 -----------PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNE 257

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           +   AL  F  M  E+VRP++F+I  V+S+C++L +L  G+ VH       ++ +L V +
Sbjct: 258 EMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGN 317

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           ALI+MY +CG  D+A TVF+ M  R+V+++N+MI+G + NG+  +A+ L+  ++   L+P
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRP 377

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
            + TFV VL+AC H  L + G   F S++  +G+ P ++HY CM++LLGR   +++A DL
Sbjct: 378 TNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDL 437

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+++   P+ ++  TLLS C M  +++ GE  A+ L +    ++G Y++LS++YA+ G+W
Sbjct: 438 IRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKW 497

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           ++ A +R+ MK   ++K    S IE++N++H+F+  D  HP  E IYE+L +L + L+  
Sbjct: 498 KEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLE 557

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P  ++VL D ++ EK  ++  HSE+LA+ Y LI      T IR+MKN+RVC DCH  
Sbjct: 558 GYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLIST-EPCTVIRVMKNLRVCYDCHSA 616

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  + I  R +++RD NRFH+F  G CSC D W
Sbjct: 617 IKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 157/287 (54%), Gaps = 9/287 (3%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           R++  Y K G+L  AR +F++MP  D+++   ++S+++  G V++  A+F ++  +D+V 
Sbjct: 187 RIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   I GF        AL+ F  MQ +   P ++T V  L+AC+QL  L  G+ +H  + 
Sbjct: 246 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              +  N+FV NAL +MY++ G ID+A+ +FD M +R+++++N MISG   NG+ ++ I+
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGY 298
           LF+ M    L P  VT   +L AC   G +D   ++FH +     V      +  M+   
Sbjct: 366 LFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLL 425

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
            + G+ E+A  L   M    + PD   + +++S+C    +L  G+ V
Sbjct: 426 GRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQV 469



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 134/285 (47%), Gaps = 32/285 (11%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G + D   V  +L +C +   ID A R+F      +   +T +I G+  +G   DA+ L+
Sbjct: 76  GHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLY 135

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           + ML + + PD + ++S++ +C    +L  G+ VH +A+ LG+  + LV   ++++Y KC
Sbjct: 136 SRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKC 195

Query: 372 GVTDDAWTVFNMMPT------------------------------RNVVSWNSMINGYAQ 401
           G   DA  VF  MP                               ++ V W +MI+G+ +
Sbjct: 196 GELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVR 255

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           N +   AL  +  +  EN++P+ FT V VLSAC      E G+    S      I  +L 
Sbjct: 256 NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR-WVHSYMRKFEIELNLF 314

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               +IN+  R   +D+A  +   +  + + + ++T++S  +M G
Sbjct: 315 VGNALINMYSRCGSIDEAQTVFDEMKDR-DVITYNTMISGLSMNG 358



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 36/217 (16%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ ++R GS+ + + +FD+M  RD ++YNT I+G +  G SR+A+++F  M   R  
Sbjct: 317 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 376

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT+ T V  LNAC+           HG +V  + G  +F  +++T  Y    +I+    +
Sbjct: 377 PTNVTFVGVLNACS-----------HGGLV--DFGFKIF--HSMTRDYGVEPQIEHYGCM 421

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
            D +                + G+ ++  DL + M++    PD + +  +L AC     +
Sbjct: 422 VDLLG---------------RVGRLEEAYDLIRTMKM---TPDHIMLGTLLSACKMHKNL 463

Query: 274 DDAGRLFHVIKEK---DNVCWTTMIVGYTQNGKEEDA 307
           +   ++  V++++   D+  +  +   Y  +GK ++A
Sbjct: 464 ELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEA 500



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 46/90 (51%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H + +  G   D  +   L+    KC   D A  +F      NV  + ++I+G+  +G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             +A+ LY ++L +++ PD++   S+L AC
Sbjct: 128 YFDAIQLYSRMLHDSILPDNYLMASILKAC 157


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 330/573 (57%), Gaps = 41/573 (7%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           +A+ AC +   L  G+Q+H +++       VF+   L  MY + G +D AR + DRM  R
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------- 267
           ++VSW  MISGY +  +  + +DLF +M   G  P+E T++ +L +C             
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 166

Query: 268 ----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  ++  I +A R+F  + E+D V  T +I GY Q G +E
Sbjct: 167 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 226

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS--SA 363
           +AL LF ++ SE ++ +  + +++V++ + LASL +G+ VH  A++L  +    V+  ++
Sbjct: 227 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH--ALILRKELPFFVALQNS 284

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KCG    +  VF+ M  R+VVSWN+M+ GY ++G   E ++L+  L +E +KPD
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 343

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           S T ++VLS C H  L + G + FD++           HY C+I+LLGRS  ++KA++LI
Sbjct: 344 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           +++P +    IW +LL  C +  ++  GE+ A+ L E+EP NAG Y++LSN+YAA G W+
Sbjct: 404 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 463

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  +R  M  K V K    SWI +D  +H F S +R HP  + I  ++ ++   ++ AG
Sbjct: 464 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 523

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           F P+   VLHD  +E+K + +  HSEKLA+ + L+  P G+T IR+MKN+R+C DCH F 
Sbjct: 524 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLT-IRVMKNLRICVDCHNFA 582

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KF S +  R I LRD NRFH    GNC+C D W
Sbjct: 583 KFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 60/351 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L++ + R G++ D R + D+MP R  VS+ T I+G++      EAL +F +M +    P 
Sbjct: 83  LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPN 142

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +YT  + L +C+    + +GKQ+H  +V  N   ++FV ++L DMYAK   I +AR +FD
Sbjct: 143 EYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFD 202

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            +  R++VS   +ISGY + G  ++ +DLF+++   G+  + VT + ++ A         
Sbjct: 203 TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDY 262

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G++  + R+F  + E+  V W  M++GY +
Sbjct: 263 GKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGR 322

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLL 359
           +G   + + LF + L ++V+PD  ++ +V+S C+           HG  V  G+D  D +
Sbjct: 323 HGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCS-----------HGGLVDEGLDIFDTV 370

Query: 360 V--SSAL---------IDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           V   SAL         ID+  + G  + A  +   MP  +  S W S++  
Sbjct: 371 VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 421



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 164/303 (54%), Gaps = 14/303 (4%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++LL  +A+S ++Q+ R +FD +P RD VS    I+G+A KG   EAL +F ++  +  +
Sbjct: 182 SSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQ 241

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  + + A + L  L  GKQ+H  I+   L   V ++N+L DMY+K G++  +R +
Sbjct: 242 CNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRV 301

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R++VSWN M+ GY ++G   + I LF+++    + PD VT+  +L  C   G +
Sbjct: 302 FDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLV 360

Query: 274 DDAGRLFH-VIKEKDNVCWT----TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+   +F  V+KE+  +  T     +I    ++G+ E AL L   M  E   P  +   S
Sbjct: 361 DEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFEST-PSIW--GS 417

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           ++ +C   A+++ G++V  K + +  ++  + ++ S   ++Y   G+  D + V  +M  
Sbjct: 418 LLGACRVHANVHVGELVAQKLLEMEPENAGNYVILS---NIYAAAGMWKDVFKVRKLMLE 474

Query: 387 RNV 389
           + V
Sbjct: 475 KTV 477



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           LYS G       +T LV   + +  ++  K++ + + L    P    L N L+  Y+K G
Sbjct: 235 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHA-LILRKELPFFVALQNSLIDMYSKCG 293

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD---KMPIRDSVSYNTAIAG 130
           KL Y+R +FD M  R ++SWNA+L  + R G   ++ +LF    K    DSV+    ++G
Sbjct: 294 KLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSG 353

Query: 131 FANKGFSREALQVFSRMQKDR 151
            ++ G   E L +F  + K++
Sbjct: 354 CSHGGLVDEGLDIFDTVVKEQ 374


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/642 (32%), Positives = 361/642 (56%), Gaps = 40/642 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  + + G +   R LFD MP+R+ VS+N  +AG+ + G   E L +F  M   +  
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 154 -PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P +Y   +AL+AC+    ++ G Q HG +    L  + +V++AL  MY++   ++ A  
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 213 LFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           + D +      ++ S+N +++  +++G+ ++ +++ + M    +  D VT   ++G C Q
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 270 T-----------------------------------GRIDDAGRLFHVIKEKDNVCWTTM 294
                                               G + +A  +F  ++ ++ V WT +
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTAL 293

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           +  Y QNG  E++L LF  M  E   P++++ + ++++CA +A+L HG ++H +   LG 
Sbjct: 294 MTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGF 353

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
            + ++V +ALI+MY K G  D ++ VF  M  R++++WN+MI GY+ +G   +AL ++  
Sbjct: 354 KNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQD 413

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           ++     P+  TF+ VLSA  H  L + G  + + +     I P L+HY CM+ LL R+ 
Sbjct: 414 MVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAG 473

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +D+A + +K+   K + + W TLL+ C +  +   G   A  + +++P + G Y +LSN
Sbjct: 474 LLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSN 533

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           MYA   RW+ V +IR  M+ +N+KK    SW++I N +H F+SE   HPE+  IY+++ +
Sbjct: 534 MYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQ 593

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L+  ++  G+ PN   VLHD ++E+K   + YHSEKLALAY L+K P    PIRI+KN+R
Sbjct: 594 LLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIP-SPAPIRIIKNLR 652

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +C DCH  +K  S +  R II+RD+NRFHHF  G+C+C D+W
Sbjct: 653 MCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 343/603 (56%), Gaps = 54/603 (8%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSRE--ALQVFSRMQKDRF-EPTDYTHVSALNACAQ 168
           +F++MP R+  S+NT I GF+     +   A+ +F  M  D F EP  +T  S L ACA+
Sbjct: 74  IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKACAK 133

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF-------------- 214
              +++GKQIHG  +    GG+ FV + L  MY   G +  A  LF              
Sbjct: 134 TGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMID 193

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            R  +  +V WN+MI GY++ G  K    LF +M                          
Sbjct: 194 RRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKM-------------------------- 227

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSC 333
                    +++  V W TMI GY+QNG  +DA+ +F EM   ED+RP+  ++ SV+ + 
Sbjct: 228 ---------RQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           ++L SL  G+ +H  A   G+  D ++ SALIDMY KCG+ + A  VF  +P  NV++W+
Sbjct: 279 SRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWS 338

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MING+A +GQ  +A+  + K+ Q  ++P    ++++L+AC HA L E G+ +F  + +V
Sbjct: 339 AMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSV 398

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
            G+ P ++HY CM++LLGR   +D+A + I ++P KP+ +IW  LL  C M  +++ G+ 
Sbjct: 399 DGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKR 458

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            A  L ++ P ++G Y+ LSNMYA+ G W +V+ +R  MK  +++K    SWI+ID  +H
Sbjct: 459 VANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLH 518

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F+ ED +HP  + I   L ++  KL+ AG+ P T  VL + +EE+K  ++ YHSEK+A 
Sbjct: 519 EFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMAT 578

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI    G  PIRI+KN+R+C DCH  +K  S +  R I +RD  RFHHF  G+CSC 
Sbjct: 579 AFGLISTSPG-KPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCM 637

Query: 694 DNW 696
           D W
Sbjct: 638 DYW 640



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 166/418 (39%), Gaps = 121/418 (28%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAK 71
           TLYS G  +   +    +  C  + D+      Q H + +   +   T     +L F A 
Sbjct: 6   TLYSPGGNSPASSLFPQINTCRTIRDLS-----QIHAVFIKSGQIRDTLAAAEILRFCAT 60

Query: 72  SG----KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
           S      L YA  +F++MP R+  SWN ++   + S          DK  I         
Sbjct: 61  SDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDE--------DKALI--------- 103

Query: 128 IAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
                       A+ +F  M  D F EP  +T  S L ACA+   +++GKQIHG  +   
Sbjct: 104 ------------AITLFCEMMSDEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYG 151

Query: 187 LGGNVFVR---------------------------------------------NALTDMY 201
            GG+ FV                                              N + D Y
Sbjct: 152 FGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGY 211

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTV 260
            + G+   AR LFD+M  R++VSWN MISGY +NG  K  +++F+EM+    + P+ VT+
Sbjct: 212 MRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTL 271

Query: 261 SNILGACFQTG-----------------RIDD------------------AGRLFHVIKE 285
            ++L A  + G                 RIDD                  A  +F  +  
Sbjct: 272 VSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPR 331

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           ++ + W+ MI G+  +G+  DA+  F +M    VRP   +  +++++C+    +  G+
Sbjct: 332 ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGR 389



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM---P 117
           L + L+  Y+K G +  A  +F+++P  ++I+W+A+++  A  G   D    F KM    
Sbjct: 305 LGSALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG 364

Query: 118 IRDS-VSYNTAIAGFANKGFSREALQVFSRM-QKDRFEP 154
           +R S V+Y   +   ++ G   E  + FS+M   D  EP
Sbjct: 365 VRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEP 403


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 330/573 (57%), Gaps = 41/573 (7%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           +A+ AC +   L  G+Q+H +++       VF+   L  MY + G +D AR + DRM  R
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------- 267
           ++VSW  MISGY +  +  + +DLF +M   G  P+E T++ +L +C             
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVH 134

Query: 268 ----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  ++  I +A R+F  + E+D V  T +I GY Q G +E
Sbjct: 135 SLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDE 194

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS--SA 363
           +AL LF ++ SE ++ +  + +++V++ + LASL +G+ VH  A++L  +    V+  ++
Sbjct: 195 EALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVH--ALILRKELPFFVALQNS 252

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KCG    +  VF+ M  R+VVSWN+M+ GY ++G   E ++L+  L +E +KPD
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPD 311

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           S T ++VLS C H  L + G + FD++           HY C+I+LLGRS  ++KA++LI
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           +++P +    IW +LL  C +  ++  GE+ A+ L E+EP NAG Y++LSN+YAA G W+
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  +R  M  K V K    SWI +D  +H F S +R HP  + I  ++ ++   ++ AG
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 491

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           F P+   VLHD  +E+K + +  HSEKLA+ + L+  P G+T IR+MKN+R+C DCH F 
Sbjct: 492 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLT-IRVMKNLRICVDCHNFA 550

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KF S +  R I LRD NRFH    GNC+C D W
Sbjct: 551 KFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 60/351 (17%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L++ + R G++ D R + D+MP R  VS+ T I+G++      EAL +F +M +    P 
Sbjct: 51  LVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPN 110

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +YT  + L +C+    + +GKQ+H  +V  N   ++FV ++L DMYAK   I +AR +FD
Sbjct: 111 EYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFD 170

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
            +  R++VS   +ISGY + G  ++ +DLF+++   G+  + VT + ++ A         
Sbjct: 171 TLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDY 230

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G++  + R+F  + E+  V W  M++GY +
Sbjct: 231 GKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGR 290

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLL 359
           +G   + + LF + L ++V+PD  ++ +V+S C+           HG  V  G+D  D +
Sbjct: 291 HGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCS-----------HGGLVDEGLDIFDTV 338

Query: 360 V--SSAL---------IDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           V   SAL         ID+  + G  + A  +   MP  +  S W S++  
Sbjct: 339 VKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGA 389



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 164/303 (54%), Gaps = 14/303 (4%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++LL  +A+S ++Q+ R +FD +P RD VS    I+G+A KG   EAL +F ++  +  +
Sbjct: 150 SSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQ 209

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  + + A + L  L  GKQ+H  I+   L   V ++N+L DMY+K G++  +R +
Sbjct: 210 CNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRV 269

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R++VSWN M+ GY ++G   + I LF+++    + PD VT+  +L  C   G +
Sbjct: 270 FDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLH-KEVKPDSVTLLAVLSGCSHGGLV 328

Query: 274 DDAGRLFH-VIKEKDNVCWT----TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+   +F  V+KE+  +  T     +I    ++G+ E AL L   M  E   P  +   S
Sbjct: 329 DEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFEST-PSIW--GS 385

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           ++ +C   A+++ G++V  K + +  ++  + ++ S   ++Y   G+  D + V  +M  
Sbjct: 386 LLGACRVHANVHVGELVAQKLLEMEPENAGNYVILS---NIYAAAGMWKDVFKVRKLMLE 442

Query: 387 RNV 389
           + V
Sbjct: 443 KTV 445



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 4/141 (2%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           LYS G       +T LV   + +  ++  K++ + + L    P    L N L+  Y+K G
Sbjct: 203 LYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHA-LILRKELPFFVALQNSLIDMYSKCG 261

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD---KMPIRDSVSYNTAIAG 130
           KL Y+R +FD M  R ++SWNA+L  + R G   ++ +LF    K    DSV+    ++G
Sbjct: 262 KLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSG 321

Query: 131 FANKGFSREALQVFSRMQKDR 151
            ++ G   E L +F  + K++
Sbjct: 322 CSHGGLVDEGLDIFDTVVKEQ 342


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/648 (32%), Positives = 359/648 (55%), Gaps = 41/648 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +II  N+L++ + +   ++  R LFD+M +R  VSYN  + G+ + G   E +++F  M 
Sbjct: 54  NIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMV 113

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              ++P +Y   + L+ACA    +  G Q HG +    L  + FV+++L  MY+K   +D
Sbjct: 114 SSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVD 173

Query: 209 KARWLFDRM-----NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            A  + +       N+ +   +N +++  +++G+  + +++   M   G+  D VT  ++
Sbjct: 174 LALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSV 233

Query: 264 LGACFQT-----------------------------------GRIDDAGRLFHVIKEKDN 288
           +G C Q                                    G +  A ++F  ++ ++ 
Sbjct: 234 MGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNV 293

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V WT+++  Y QNG+ E+ L L + M  E    ++F+ + ++++ A +A+L HG ++H +
Sbjct: 294 VVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHAR 353

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
              LG+ + ++V +ALI+MY KCG  D ++ VF  M  R++++WN+MI GY+Q+G   +A
Sbjct: 354 VEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQA 413

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L+  +L     P+  TFV VLSAC H  L   G  + + +     + P L+HY C++ 
Sbjct: 414 LLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVA 473

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +L R+  +++A + +++   K + + W  LL+ C +  +   G   A  + +++P + G 
Sbjct: 474 VLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQMDPRDMGT 533

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y +LSNMYA    W+ V  IR  M+ +NVKK    SWIEI N VH F S+   HPE   I
Sbjct: 534 YTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIRNAVHVFSSDGSNHPECIQI 593

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y ++  L++ +++ G+ PN + VLHD ++E+K   + YHSEKLA+AY L+K P    PIR
Sbjct: 594 YNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSEKLAIAYGLMKIP-SPAPIR 652

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           ++KN+R+C DCH  +K  S +  R II+RD++RFHHF  G C+C D+W
Sbjct: 653 VIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTCTCTDHW 700


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/587 (35%), Positives = 329/587 (56%), Gaps = 40/587 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R++FD  P    + +N+ I  +       EAL+++  M +                    
Sbjct: 103 RSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK------------------- 143

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
                          G L  +VF+   L DMY+K G++ +AR +FD+M  R++V+WN MI
Sbjct: 144 ---------------GGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMI 188

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +G  ++  P     +F +M    ++ D+V+   ++      G   +   LF  +K   NV
Sbjct: 189 AGLSQSEDPYVARRVFDQM----VDQDDVSWGTMMAGYAHNGCFVEVLELFDKMK-LGNV 243

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  +I  Y QNG  ++A+  F++M  E+  P+  +  SV+ + A LA+   G   H   
Sbjct: 244 TWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACI 303

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           + +G   + LV ++LIDMY KCG  D +  +FN M  ++ VSWN+M++GYA +G    A+
Sbjct: 304 IQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAI 363

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           AL+  + +  ++ DS +FVSVLSAC HA L E G+  F S+S  + I P L+HYACM++L
Sbjct: 364 ALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDL 423

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+   D+ +  IK +P +P++ +W  LL  C M  ++K GE+A  HL +LEP N   +
Sbjct: 424 LGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHF 483

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LS++YA  GRW D    RS M    +KK    SW+E+ NKVH F   D++HP+ E ++
Sbjct: 484 VVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMH 543

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
              + L++K+++ G+ P+   VL + +EE+K   +  HSE+LA+ + L+  P G T I+I
Sbjct: 544 LLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGST-IQI 602

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +KN+RVC DCH   KF S I  R II+RD+ RFHHF  G CSC D W
Sbjct: 603 VKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 160/321 (49%), Gaps = 38/321 (11%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+   L+  Y+K G L  AR++FDKMP RD+++WNA+++  ++S      R +FD+M  
Sbjct: 150 VFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVD 209

Query: 119 RDSVSYNTAIAGFANKG------------------------------FSREALQVFSRMQ 148
           +D VS+ T +AG+A+ G                               ++EA+  F +M+
Sbjct: 210 QDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMR 269

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            + F P   T VS L A A L   R G   H  I+      N  V N+L DMYAK G++D
Sbjct: 270 LENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLD 329

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            +  LF+ M++++ VSWN M+SGY  +G   + I LF  MQ   +  D V+  ++L AC 
Sbjct: 330 YSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACR 389

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +++  ++FH + +K ++      +  M+    + G  ++ L     M    V PD 
Sbjct: 390 HAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVM---PVEPDA 446

Query: 324 FSISSVVSSCAKLASLYHGQV 344
               +++ SC   +++  G+V
Sbjct: 447 GVWGALLGSCRMHSNVKLGEV 467



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           + T + N L+  YAK G+L Y+  LF++M  +D +SWNA+LS +A  G      ALF  M
Sbjct: 310 SNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLM 369

Query: 117 PIR----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                  DSVS+ + ++   + G   E  ++F  M        D  H + +
Sbjct: 370 QESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACM 420



 Score = 43.1 bits (100), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 84/195 (43%), Gaps = 15/195 (7%)

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
           LS     +      ++SSC  L  L     +H + +V G      ++  LI++Y      
Sbjct: 44  LSSSTYTNYLHYPRLLSSCKHLNPLLQ---IHAQIIVSGFKHHHSITH-LINLYSLFHKC 99

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSA 433
           D A +VF+  P  + + WNSMI  Y ++ Q  EAL +Y  ++++  L+ D F    ++  
Sbjct: 100 DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDM 159

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPN 491
                  +R +  FD +       P  D  A   MI  L +S D   A  +   +  + +
Sbjct: 160 YSKMGDLKRAREVFDKM-------PKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQ-D 211

Query: 492 SLIWSTLLSVCAMKG 506
            + W T+++  A  G
Sbjct: 212 DVSWGTMMAGYAHNG 226


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 318/569 (55%), Gaps = 37/569 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           S + ACA+   L   + IH  +      G+VF+ N+L  +Y K G +  AR +FD M  R
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPAR 128

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------- 267
           ++ SW  +I+GY +N  P + + L   M      P+  T +++L A              
Sbjct: 129 DMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIH 188

Query: 268 ----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  + GR+D A  +F  ++ K+ V W  +I G+ + G  E
Sbjct: 189 ALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGE 248

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
             L++F EM         F+ SSV S+ A + +L  G+ VH   +  G      V + ++
Sbjct: 249 TTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTIL 308

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY K G   DA  VF+ +  ++VV+WNSM+  +AQ G   EA+  ++++ +  +  +  
Sbjct: 309 DMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQI 368

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+S+L+AC H  L + G+ +FD +   + + P +DHY  +++LLGR+  ++ A+  I  
Sbjct: 369 TFLSILTACSHGGLVKEGKQYFDMMKE-YNLEPEIDHYVTVVDLLGRAGLLNDALVFIFK 427

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP + +W  LL  C M  + K G+ AA H+FEL+P + GP ++L N+YA+ G+W+  
Sbjct: 428 MPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAA 487

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R  MK+  VKK  A SW+EI+N VH FV+ D THP +E IY++  ++  ++++AG+ 
Sbjct: 488 ARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYV 547

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           PNT  VL    E+E+   + YHSEK+ALA+ LI  P G T IRIMKNIR+CGDCH   ++
Sbjct: 548 PNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGAT-IRIMKNIRICGDCHSAFRY 606

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            S +  R I++RD+NRFHHF  G+CSC D
Sbjct: 607 ISKVFKREIVVRDTNRFHHFSSGSCSCGD 635



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/427 (24%), Positives = 187/427 (43%), Gaps = 68/427 (15%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           +R  +D++ +R  AAT   Y  L+  C R   ++ A+ + +H+  + +   + FL N L+
Sbjct: 48  IRDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFA-GSVFLDNSLI 106

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           H Y K G                               +V D R +FD MP RD  S+ +
Sbjct: 107 HLYCKCG-------------------------------AVADARRVFDGMPARDMCSWTS 135

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            IAG+A      EAL +   M + RF+P  +T  S L A         G+QIH   V  +
Sbjct: 136 LIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHALTVKYD 195

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +V+V +AL DMYA+ G +D A  +FD++ ++N VSWN +I+G+ + G  +  + +F 
Sbjct: 196 WHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFA 255

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRID-------------------------------- 274
           EMQ  G      T S++  A    G ++                                
Sbjct: 256 EMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSG 315

Query: 275 ---DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
              DA ++F  + +KD V W +M+  + Q G   +A+  F EM    V  ++ +  S+++
Sbjct: 316 SMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILT 375

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +C+    +  G+          ++ ++     ++D+  + G+ +DA      MP +   +
Sbjct: 376 ACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAA 435

Query: 392 -WNSMIN 397
            W +++ 
Sbjct: 436 VWGALLG 442



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 157/305 (51%), Gaps = 8/305 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR G +    A+FD++  ++ VS+N  IAGFA KG     L +F+ MQ
Sbjct: 199 DVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQ 258

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ FE T +T+ S  +A A +  L +GK +H  ++      + FV N + DMYAK G + 
Sbjct: 259 RNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMI 318

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +FDR++ +++V+WN M++ + + G  ++ +  F+EM+  G++ +++T  +IL AC 
Sbjct: 319 DARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACS 378

Query: 269 QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +  + F ++K    E +   + T++    + G   DAL+   +M    ++P   
Sbjct: 379 HGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM---PMKPTAA 435

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++ SC    +   GQ        L   DD      L ++Y   G  D A  V  MM
Sbjct: 436 VWGALLGSCRMHKNAKIGQFAADHVFELD-PDDTGPPVLLYNIYASTGQWDAAARVRKMM 494

Query: 385 PTRNV 389
               V
Sbjct: 495 KATGV 499


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 233/664 (35%), Positives = 362/664 (54%), Gaps = 48/664 (7%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAG 130
           L YA  +F+ +   +++ WN +   HA S        L+  M     + +S ++   +  
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
            A    S+E LQ+   + K  +E   Y H S ++   Q   L    ++  +    +   +
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDR----SSHRD 128

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V    AL   YA  G I+ AR +FD +  +++VSWN MISGY++ G  K+ ++LF+EM  
Sbjct: 129 VVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMK 188

Query: 251 LGLNPDEVTVSNILGACFQTGRID-----------------------------------D 275
             + PDE T+  ++ A  ++G I+                                    
Sbjct: 189 TNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMET 248

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  LF  +  KD + W  +I GYT     ++AL+LF EML     P+  ++ S++ +CA 
Sbjct: 249 ACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAH 308

Query: 336 LASLYHGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           L ++  G+ +H      + GV +   + ++LIDMY KCG  + A  VFN M  +++ +WN
Sbjct: 309 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWN 368

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +MI G+A +G+   A  ++ ++ +  +KPD  TFV +LSAC HA + + G++ F S++  
Sbjct: 369 AMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHN 428

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           + ITP L+HY CMI+LLG S    +A ++I ++  +P+ +IW +LL  C M G+++ GE 
Sbjct: 429 YKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEK 488

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            A++LF++EP N G Y++LSN+YA  GRW +VA IR  +  K +KK    S IEID+ VH
Sbjct: 489 FAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVH 548

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F+  D+ HP    IY  L ++   LQEAGF P+T  VL + +EE K  ++ +HSEKLA+
Sbjct: 549 EFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAI 608

Query: 634 AYCLIK-KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           A+ LI  KP   T + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC
Sbjct: 609 AFGLISTKPE--TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSC 666

Query: 693 KDNW 696
            D W
Sbjct: 667 NDYW 670



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 120/465 (25%), Positives = 217/465 (46%), Gaps = 51/465 (10%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G       +  L+  C ++   +   ++  H+    YE +  ++H  L+  Y ++ 
Sbjct: 54  MISLGLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDL-YVHTSLISMYVQNE 112

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           +L  A  +FD+   RD++S+ AL++ +A  G ++  R +FD++P++D VS+N  I+G+  
Sbjct: 113 RLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVE 172

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G  +EAL++F  M K    P + T V+ ++A A+   +  G+Q+H  I     G N+ +
Sbjct: 173 TGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKI 232

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL D Y+K GE++ A  LF  ++ ++++SWN++I GY      K+ + LFQEM   G 
Sbjct: 233 VNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE 292

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHV------------------------------- 282
           +P++VT+ +IL AC   G I D GR  HV                               
Sbjct: 293 SPNDVTMLSILHACAHLGAI-DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEA 351

Query: 283 -------IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
                  +  K    W  MI G+  +G+   A  +F+ M   +++PD  +   ++S+C+ 
Sbjct: 352 AHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSH 411

Query: 336 LASLYHGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
              L  G+ +         +   L     +ID+    G+  +A  + + M    + V W 
Sbjct: 412 AGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWC 471

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLK-----PDSFTFVSVLSA 433
           S++     +G     + L +K  Q   K     P S+  +S + A
Sbjct: 472 SLLKACKMHGN----VELGEKFAQNLFKIEPNNPGSYVLLSNIYA 512


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/703 (32%), Positives = 373/703 (53%), Gaps = 17/703 (2%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           A   + +RG AA   A  + +  C R       + + +H            +   L   Y
Sbjct: 166 AFREMRARGVAADGYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMY 225

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS-------- 121
           A+   +  A  +  +     +++WNA+++   R G V D   L ++M  RD+        
Sbjct: 226 AEGADVAAATTVLLRTAGAGVVAWNAVIACCVRLGLVDDALELAERM-ARDAETSEAAEP 284

Query: 122 --VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
              ++NT ++G A  G  REAL V  RM +    P   T  S L + A    L  G ++H
Sbjct: 285 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 344

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
              +   L  + +   AL DMYAK G +D A+ +FD + +RNL +WN +++G+   G   
Sbjct: 345 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFD 404

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295
           + ++L + M+   ++P+  T + ++      G    A  L   IK      + V WT++I
Sbjct: 405 RALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSWTSLI 464

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G    G  +D+   F+EM  + ++P   ++  ++ +CA LA L  G+ +H  A+    D
Sbjct: 465 SGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALRRAYD 524

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            +++VS+ALIDMY K G    A  VF  +  +N+V  N+M+ G A +GQ  EA AL+  +
Sbjct: 525 GEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAALFHDM 584

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +  LKPD  TF ++L+AC    L      + D + A +G+ P+ +H+ACM++LL R   
Sbjct: 585 WRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLARRGY 644

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           +D+A+  I+  P +P +  W  LL+ CA+ G++   E AARHLF+LEP N+  Y+ + ++
Sbjct: 645 LDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNSANYLAMMSL 704

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT--HPETEIIYEELS 593
           Y     +++  S++ +MK++ V     +SW +    +H F  +  +  HPET  IY+E+S
Sbjct: 705 YEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPETPEIYDEMS 764

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +L+ +++  G+ P+T  + +D  EEEK   +  H+EKLA+ Y LI+      P+R++KN 
Sbjct: 765 RLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSRAPVRVVKNT 824

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH  +K  S + GR IILRD++RFHHFV G CSC D W
Sbjct: 825 RMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 867



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 197/469 (42%), Gaps = 36/469 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           LL    R  S + L A  D    +D+V +N  +A  A  G    A+  F  M+       
Sbjct: 119 LLERLGRGASGRRLLAEGDGDDWKDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAAD 178

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            Y    AL+AC +      G+ +H   + VG +  +  V   L  MYA+G ++  A  + 
Sbjct: 179 GYACARALHACGRAGRRLEGRAVHAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVL 238

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
            R     +V+WN +I+  ++ G     ++L + M                    +     
Sbjct: 239 LRTAGAGVVAWNAVIACCVRLGLVDDALELAERMA-------------------RDAETS 279

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +A        E     W T++ G  ++G++ +AL +   ML + + PD  ++SS++ S A
Sbjct: 280 EAA-------EPTLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVA 332

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
              SL HG  VH   +  G+  D    +AL+DMY KCG  D A  VF+ +  RN+ +WNS
Sbjct: 333 NSGSLGHGTEVHCFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNS 392

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           ++ G+A  G    AL L + + +  + P+  T+  +++      L  +       I +  
Sbjct: 393 LVAGHANAGHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSA- 451

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
           G+ P++  +  +I+      D   +      +     +P+ +    LL  CA    +  G
Sbjct: 452 GVAPNVVSWTSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKG 511

Query: 512 EMAARHLFELEPINAGPYIM---LSNMYAACGRWEDVASIRSSMKSKNV 557
           +    H F L     G  ++   L +MYA  G       +   ++ KN+
Sbjct: 512 K--ELHCFALRRAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNL 558


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/723 (32%), Positives = 376/723 (52%), Gaps = 87/723 (12%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP-- 117
           F  N LL+ Y K G L  AR LFD+MP R+++S+  L+ AHA+ G  +   ALF ++   
Sbjct: 97  FCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWE 156

Query: 118 ------------IRDSVSYNTA-IAG---------------FANKGF---------SREA 140
                       ++ +++ + A +AG               F   G            +A
Sbjct: 157 GHEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDA 216

Query: 141 LQVFSRM-QKDRFEPTDYTHVSALNACAQ----------LLDLRRGKQ-IHGKIVVGNLG 188
             VF+ + +KD    T      + N C +          LL +   +Q IHG  +     
Sbjct: 217 EHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQGIHGCAIKTLND 276

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
               V  AL DMYAK G+I  AR  F+ +   +++  + MIS Y ++ Q ++  +LF  +
Sbjct: 277 TEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRL 336

Query: 249 QLLGLNPDEVTVSNILGACF-----------------------------------QTGRI 273
               + P+E ++S++L AC                                    +   +
Sbjct: 337 MRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDM 396

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           D + ++F  +++ + V W T++VG++Q+G  E+AL +F EM +  +   + + SSV+ +C
Sbjct: 397 DSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRAC 456

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A  AS+ H   +H        ++D ++ ++LID Y KCG   DA  VF  +  R+++SWN
Sbjct: 457 ASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWN 516

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           ++I+GYA +GQ  +AL L+D++ + N++ +  TFV++LS C    L   G + FDS+   
Sbjct: 517 AIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRID 576

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           HGI PS++HY C++ LLGR+  ++ A+  I  +P  P++++W  LLS C +  ++  G  
Sbjct: 577 HGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRF 636

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           +A  + E+EP +   Y++LSNMYAA G  + VA +R SM++  V+K    SW+EI  ++H
Sbjct: 637 SAEKILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIH 696

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F      HP+  +I   L  L  K    G+ P+  +VLHD  +E+K + +  HSE+LAL
Sbjct: 697 AFSVGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLAL 756

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           AY L+  P G  PIRI+KN+R C DCH      S I+ R II+RD NRFHHF  G CSC 
Sbjct: 757 AYGLVMTPPG-HPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCG 815

Query: 694 DNW 696
           D W
Sbjct: 816 DYW 818



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 138/317 (43%), Gaps = 42/317 (13%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E + + ++  CT +  ++  K++ +H  +     +  F+ N L+ FYAK   +  +  +F
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHA-IKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 403

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
             +   + +SWN                               T + GF+  G   EAL 
Sbjct: 404 SSLRDANEVSWN-------------------------------TIVVGFSQSGLGEEALS 432

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           VF  MQ  +   T  T+ S L ACA    +R   QIH  I       +  + N+L D YA
Sbjct: 433 VFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYA 492

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G I  A  +F  +  R+++SWN +ISGY  +GQ    ++LF  M    +  +++T   
Sbjct: 493 KCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVA 552

Query: 263 ILGACFQTGRID------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           +L  C  TG ++      D+ R+ H IK      +T ++    + G+  DAL    ++ S
Sbjct: 553 LLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEH-YTCIVRLLGRAGRLNDALQFIGDIPS 611

Query: 317 EDVRPDKFSISSVVSSC 333
               P      +++SSC
Sbjct: 612 A---PSAMVWRALLSSC 625



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 9/146 (6%)

Query: 13  TLYSRGQAA----TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +++   QAA    T+  Y+ ++  C     +  A ++   ++ + +  N T + N L+  
Sbjct: 432 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFN-NDTVIGNSLIDT 490

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSY 124
           YAK G +  A  +F  +  RDIISWNA++S +A  G   D   LFD+M       + +++
Sbjct: 491 YAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITF 550

Query: 125 NTAIAGFANKGFSREALQVFSRMQKD 150
              ++   + G     L +F  M+ D
Sbjct: 551 VALLSVCCSTGLVNHGLSLFDSMRID 576


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/525 (38%), Positives = 302/525 (57%), Gaps = 39/525 (7%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--------------------- 248
           AR LFDRM  R+  SW+ ++S + ++GQP+  + +++ M                     
Sbjct: 112 ARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAA 171

Query: 249 -----------------QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
                               G++ D V  S +     + GR+DDA  +F  +  +D V W
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSW 231

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T M+  Y    ++ +   LF  ML   ++P++F+ + V+ +CA+  S   G+ VHG+   
Sbjct: 232 TAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTK 291

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
               D     SAL+ MY K G    A  VF  MP  ++VSW +MI+GYAQNGQ  EAL  
Sbjct: 292 SRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRY 351

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +D LL+   +PD  TFV VLSAC HA L ++G + F SI   +GI  + DHYAC+I+LL 
Sbjct: 352 FDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLS 411

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS   ++A ++I ++  KPN  +W++LL  C +  +++    AA  LFE+EP N   Y+ 
Sbjct: 412 RSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVT 471

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L+N+YA+ G +++V + R  M+ K + K  A SWIE+  ++H F+  D+ HP+ E +Y  
Sbjct: 472 LANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYAL 531

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L KL  K++E G+  +T  VLHD ++E+K + I YHSE+LA+A+ +I  P G  PI++ K
Sbjct: 532 LKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKG-APIKVFK 590

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+R+CGDCH  +K  S I+ R II+RDSNRFHHF  G+CSC+D W
Sbjct: 591 NLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/390 (30%), Positives = 182/390 (46%), Gaps = 48/390 (12%)

Query: 54  YEPNTTFLHNRLLHFYAK-SGKLFYARDLFDKMPLRDIISWNALLSAHARSG-SVQDLRA 111
           + P +T L NR+LH  +     L  A  L   +P  D+ S+N L++A  RS   +   RA
Sbjct: 55  FRPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARA 114

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP------TDYTHVSALNA 165
           LFD+MP RD  S++  ++  A  G  R AL ++ RM +   EP       ++T  SAL A
Sbjct: 115 LFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLR---EPGSAGVDNEFTASSALAA 171

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
                  R G+++H  +V   +  +  V +AL DMYAK G +D AR +FDRM  R++VSW
Sbjct: 172 ATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSW 231

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ---------------- 269
             M+  Y    +  +   LF  M   G+ P+E T + +L AC +                
Sbjct: 232 TAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTK 291

Query: 270 -------------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                               G +  A R+F  + + D V WT MI GY QNG+ ++AL  
Sbjct: 292 SRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRY 351

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYC 369
           F+ +L    RPD  +   V+S+CA    +  G  + H      G++      + +ID+  
Sbjct: 352 FDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLS 411

Query: 370 KCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
           + G+ + A  + N M  + N   W S++ G
Sbjct: 412 RSGLFERAEEMINTMSVKPNKFLWASLLGG 441



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 135/250 (54%), Gaps = 8/250 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D + W+AL   +A+ G V D R++FD+MP+RD VS+   +  + +     E  ++F RM 
Sbjct: 196 DAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRML 255

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +P ++T+   L ACA+    + GKQ+HG++     G + F  +AL  MY+K G++ 
Sbjct: 256 RSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMG 315

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  M   +LVSW  MISGY +NGQP + +  F  +   G  PD VT   +L AC 
Sbjct: 316 TAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACA 375

Query: 269 QTGRIDDAGRLFHVIKEKDNVCWTT-----MIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +D    +FH IK++  +  T      +I   +++G  E A  + N M    V+P+K
Sbjct: 376 HAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTM---SVKPNK 432

Query: 324 FSISSVVSSC 333
           F  +S++  C
Sbjct: 433 FLWASLLGGC 442


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/572 (37%), Positives = 334/572 (58%), Gaps = 8/572 (1%)

Query: 123 SYNTAIAGFANKGFSREALQVFSR--MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +YN  +  F+        +  F+   +  +   P +YT  S L ACA L  +  G+++H 
Sbjct: 92  AYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHC 151

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +       N+FVRN+L D+Y K G    A+ LFD M  R++VSWN +ISGY  +G   K
Sbjct: 152 FVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDK 211

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
              +F  M    +  + V+ S ++    + G +++A +LF  +  ++ V W  MI GY Q
Sbjct: 212 ARMVFDGM----MEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQ 267

Query: 301 NGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           N K  DA+ LF +M  E  + P+  ++ SV+S+CA L +L  G+ +H       ++  L 
Sbjct: 268 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 327

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL DMY KCG   +A  VF+ M  R+V+SW+ +I G A  G   EA   + +++++ 
Sbjct: 328 LGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG 387

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           L+P+  +F+ +L+AC HA L ++G  +FD +  V+GITP ++HY C+++LL R+  +D+A
Sbjct: 388 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 447

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             LI S+P +PN ++W  LL  C +  D + GE     + EL+  ++G  + L+N+YA+ 
Sbjct: 448 ESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASM 507

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GR +D AS R  M+     K    SWIEI+N V++F   D +HP++  IY  + +L  K+
Sbjct: 508 GRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKM 567

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           + AG+ P T LV+H+  EEEK  ++  HSEKLALA+ LI    G T IRI+KN+RVC DC
Sbjct: 568 KVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTT-IRIVKNLRVCNDC 626

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           H  +K  S I+ R I++RD +RFHHF  G CS
Sbjct: 627 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/393 (27%), Positives = 188/393 (47%), Gaps = 44/393 (11%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E  +T ++  C  +  V   +++   +     E N  F+ N L+  Y K G    A+ LF
Sbjct: 127 EYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNL-FVRNSLVDLYFKVGCNCIAQKLF 185

Query: 83  DKMPLRDIISWNAL-------------------------------LSAHARSGSVQDLRA 111
           D+M +RD++SWN L                               +S +AR G++++ R 
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQ 245

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLL 170
           LF+ MP+R+ VS+N  IAG+A      +A+++F +MQ +    P D T VS L+ACA L 
Sbjct: 246 LFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLG 305

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
            L  GK IH  I    +   +F+ NAL DMYAK G + +A+ +F  M+ R+++SW+++I 
Sbjct: 306 ALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIM 365

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
           G    G   +  + F EM   GL P++++   +L AC   G +D     F ++ +   + 
Sbjct: 366 GLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGIT 425

Query: 291 -----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                +  ++   ++ G+ + A  L N M    ++P+     +++  C        G+ V
Sbjct: 426 PKIEHYGCVVDLLSRAGRLDQAESLINSM---PMQPNVIVWGALLGGCRIYKDAERGERV 482

Query: 346 HGKAVVLGVDDDLLVSSA-LIDMYCKCGVTDDA 377
             +  +L +D +   S   L ++Y   G  DDA
Sbjct: 483 VWR--ILELDSNHSGSLVYLANVYASMGRLDDA 513


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 337/616 (54%), Gaps = 46/616 (7%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +S N  I     +G  ++AL+V S+       P+  T+   +  C     L  G ++H  
Sbjct: 47  ISNNQLIQSLCKEGKLKQALRVLSQES----SPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           I+      + F+   L  MY+  G +D AR +FD+   R +  WN +       G  ++ 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------- 270
           + L+ +M  +G+  D  T + +L AC  +                               
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 271 --------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE--DVR 320
                   G +D A  +F+ +  ++ V W+ MI  Y +NGK  +AL  F EM++E  D  
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P+  ++ SV+ +CA LA+L  G+++HG  +  G+D  L V SAL+ MY +CG  D    V
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRV 342

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M  R+VVSWNS+I+ Y  +G   +A+ +++++L     P   TFVSVL AC H  L 
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           E G+  F+S+   HGI P ++HYACM++LLGR++ +D+A  +++ +  +P   +W +LL 
Sbjct: 403 EEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C + G+++  E A+R LF LEP NAG Y++L+++YA    W++V  ++  ++ + ++K 
Sbjct: 463 SCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKL 522

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
               W+E+  K++ FVS D  +P  E I+  L KL + ++E G+ P TK VL++ + EEK
Sbjct: 523 PGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK 582

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + +  HSEKLALA+ LI    G  PIRI KN+R+C DCHLF KF S  + + I++RD N
Sbjct: 583 ERIVLGHSEKLALAFGLINTSKG-EPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVN 641

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G CSC D W
Sbjct: 642 RFHRFKNGVCSCGDYW 657



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 181/440 (41%), Gaps = 86/440 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           KL+QA+  L S+  + +++ Y  L+L C   + +    R+  H+ L+       FL  +L
Sbjct: 61  KLKQALRVL-SQESSPSQQTYELLILCCGHRSSLSDGLRVHRHI-LDNGSDQDPFLATKL 118

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y+  G + YA                               R +FDK   R    +N
Sbjct: 119 IGMYSDLGSVDYA-------------------------------RKVFDKTRKRTIYVWN 147

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA----QLLDLRRGKQIHGK 181
                    G   E L ++ +M +   E   +T+   L AC         L +GK+IH  
Sbjct: 148 ALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAH 207

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           +       +V++   L DMYA+ G +D A ++F+ M  RN+VSW+ MI+ Y KNG+  + 
Sbjct: 208 LTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 242 IDLFQEM--QLLGLNPDEVTVSNILGACF------------------------------- 268
           +  F+EM  +    +P+ VT+ ++L AC                                
Sbjct: 268 LRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALV 327

Query: 269 ----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G++D   R+F  + ++D V W ++I  Y  +G    A+ +F EML+    P   
Sbjct: 328 TMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPV 387

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVL------GVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  SV+ +C+     + G V  GK +        G+   +   + ++D+  +    D+A 
Sbjct: 388 TFVSVLGACS-----HEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAA 442

Query: 379 TVFNMMPTR-NVVSWNSMIN 397
            +   M T      W S++ 
Sbjct: 443 KMVQDMRTEPGPKVWGSLLG 462


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 332/591 (56%), Gaps = 40/591 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R + + +  R+   +   I G+  +G   EA+ ++  M+K+   P  +T  + L AC  +
Sbjct: 104 RRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSM 163

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
            DL  G+Q H +         V+V N + DMY K G I  AR +FD M  R+++SW  +I
Sbjct: 164 GDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELI 223

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           + Y +                                    G ++ A  LF  +  KD V
Sbjct: 224 AAYAR-----------------------------------VGNMESAADLFESLPTKDMV 248

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL-ASLYHGQVVH-G 347
            WT M+ G+ QN K ++AL  F+ M    +R D+ +++  +S+CA+L AS Y  + V   
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 308

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           +       D +++ SALIDMY KCG  ++A  VF  M  +NV S++SMI G A +G+  E
Sbjct: 309 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQE 368

Query: 408 ALALYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           AL L+  ++ Q  +KP++ TFV  L+AC H+ L ++G+  F S+    G+ P+ DHY CM
Sbjct: 369 ALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCM 428

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++LLGR+  + +A++LIK++  +P+  +W  LL  C +  +    E+AA HLFELEP   
Sbjct: 429 VDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDII 488

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW-IEIDNKVHKFVSEDRTHPET 585
           G YI+LSN+Y++ G W  V S+R  +K K +KK  A SW ++ + ++HKF   +  HP +
Sbjct: 489 GNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMS 548

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           + I ++L +L+++L   G+ P+   V +D  +  K   +  H+EKLALA+ L+      T
Sbjct: 549 KKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYT 608

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I+IMKN+R+C DCH+FM+ AS++ GR II+RD+ RFHHF  G CSC D W
Sbjct: 609 -IKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 165/319 (51%), Gaps = 18/319 (5%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH--NRLLHFYAKSGKLFYARDLFD 83
           ++ L+  C  + D+ L ++  +     F      F++  N ++  Y K G +  AR +FD
Sbjct: 153 FSALLKACGSMGDLNLGRQFHAQ---TFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFD 209

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP RD+ISW  L++A+AR G+++    LF+ +P +D V++   + GFA     +EAL+ 
Sbjct: 210 EMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEY 269

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLR---RGKQIHGKIVVGNLGGNVFVRNALTDM 200
           F RM+K      + T    ++ACAQL   +   R  QI  K    +   +V + +AL DM
Sbjct: 270 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY-SPSDHVVIGSALIDM 328

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVT 259
           Y+K G +++A  +F  MNN+N+ S++ MI G   +G+ ++ +DLF  M     + P+ VT
Sbjct: 329 YSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVT 388

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEM 314
               L AC  +G +D   ++F  + +   V      +T M+    + G+ ++AL L   M
Sbjct: 389 FVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTM 448

Query: 315 LSEDVRPDKFSISSVVSSC 333
               V P      +++ +C
Sbjct: 449 ---SVEPHGGVWGALLGAC 464



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/474 (20%), Positives = 186/474 (39%), Gaps = 139/474 (29%)

Query: 32  DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF--YARDLFDKMPLRD 89
           DC  +N +   K++  H+ L      + ++  +L+    K G     Y R + + +  R+
Sbjct: 59  DCINLNQI---KQIHGHV-LRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRN 114

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
              W A+                               I G+  +G   EA+ ++  M+K
Sbjct: 115 PFLWTAV-------------------------------IRGYTIEGKFDEAIAMYGCMRK 143

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +   P  +T  + L AC  + DL  G+Q H +         V+V N + DMY K G I  
Sbjct: 144 EEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVC 203

Query: 210 ARWLFDRMNNRNLVS-------------------------------WNLMISGYLKNGQP 238
           AR +FD M  R+++S                               W  M++G+ +N +P
Sbjct: 204 ARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKP 263

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
           ++ ++ F  M+  G+  DEVTV+  + AC Q                             
Sbjct: 264 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 323

Query: 270 --------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VR 320
                    G +++A  +F  +  K+   +++MI+G   +G+ ++AL LF+ M+++  ++
Sbjct: 324 ALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIK 383

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P+  +    +++C+     + G V  G+ V                MY            
Sbjct: 384 PNTVTFVGALTACS-----HSGLVDQGRQV-------------FASMY----------QT 415

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           F + PTR+   +  M++   + G+  EAL L   +   +++P    + ++L AC
Sbjct: 416 FGVEPTRD--HYTCMVDLLGRAGRLQEALELIKTM---SVEPHGGVWGALLGAC 464


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 235/714 (32%), Positives = 375/714 (52%), Gaps = 70/714 (9%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           AAT      L+  C R  D+   + L + + L+     +TFL N L+  Y+    L  A 
Sbjct: 167 AATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASA- 225

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
                                        LR LF  MP R++VS+ T ++G +      +
Sbjct: 226 -----------------------------LR-LFAAMPRRNAVSWTTLVSGLSQNLMHAD 255

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           AL  F+ M++    PT +   SA  A A L    R +       VG     +FV + L D
Sbjct: 256 ALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVG-FDTELFVASNLAD 314

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEV 258
           MY+K G + +A  +FD+M  ++ V+W  MI GY KNG  +  +  F++M+  GL   D+ 
Sbjct: 315 MYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQH 374

Query: 259 TVSNILGA--------------CFQTGR---------------------IDDAGRLFHVI 283
              ++L A              C  T                       ++ A R+  + 
Sbjct: 375 VFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKID 434

Query: 284 KEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
               NV   T+MI GY +    E+AL+++ E+  + V P++F+ SS++  CA  A L  G
Sbjct: 435 PGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQG 494

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             +H + +   +  D  V S L+DMY KCG+   +  +FN +  R  ++WN++IN +AQ+
Sbjct: 495 AQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQH 554

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EA+  +D+++   ++P+   FVS+L+AC HA L + G  +F S+   HGI P  +H
Sbjct: 555 GHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEH 614

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y+C+I+  GR+  +D+A   I  +P KPN+  W +LL  C M+G  + GE+AA++L +LE
Sbjct: 615 YSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLE 674

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G ++ LS +YA+ G+WEDV ++R  M+   +KK   +SW++ + K H F SED +H
Sbjct: 675 PGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSH 734

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+ + IYE+L +L  +++E G+ P+T  +  + ++  K + + YHSE++A+A+ LI  P 
Sbjct: 735 PQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMP- 793

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              PI + KN+R+C DCH   KF   +  R II+RD++RFHHFV G CSC D W
Sbjct: 794 ATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 143/550 (26%), Positives = 236/550 (42%), Gaps = 61/550 (11%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           AAT      L+  C R  D+   + L + + L+     +TFL N L+  Y+    L  A 
Sbjct: 17  AATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASAL 76

Query: 80  DLFDKMPLRDIISWNALLSAHA---------------RSGSVQDLRALFDKMPIRDSVSY 124
            LF  MP R+ +SW  L+S  +               R   V   R +++          
Sbjct: 77  RLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPK 136

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV---SALNACAQLLDLRRGKQIHGK 181
           +T  A   + G +        R+ +    P   T V   S L +C +  DLRRG+ +H +
Sbjct: 137 HTLAASHCHSGPTLMVKYWGQRLWRPP-APAAATTVHLASLLQSCGRAGDLRRGRLLHAR 195

Query: 182 IVV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           +V+ G    + F+ N L  MY+   ++  A  LF  M  RN VSW  ++SG  +N     
Sbjct: 196 LVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHAD 255

Query: 241 CIDLFQEMQLLGLNPDE----------------------------------VTVSNILGA 266
            +  F  M+  G+ P                                       SN+   
Sbjct: 256 ALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNLADM 315

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFS 325
             + G + +A R+F  + +KD V WT MI GY +NG  E A++ F +M  E  V  D+  
Sbjct: 316 YSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHV 375

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
             SV+S+   L   +  + +H      G + ++ V +ALIDMY K    + A  V  + P
Sbjct: 376 FCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDP 435

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
              NVVS  SMI+GY +     EAL +Y +L ++ ++P+ FTF S++  C    L E+G 
Sbjct: 436 GGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGA 495

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                +     I  S    + ++++ G+   +  ++ L   + ++ + + W+ +++V A 
Sbjct: 496 QLHAQVIKTDLIRDSFVG-STLVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQ 553

Query: 505 KGDIKHGEMA 514
            G   HG  A
Sbjct: 554 HG---HGREA 560



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 166/390 (42%), Gaps = 37/390 (9%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            S L +C +  DLRRG+ +H ++V+ G    + F+ N L  MY+   ++  A  LF  M 
Sbjct: 24  ASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMP 83

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD----EVTVSNILGACFQTGRID 274
            RN VSW  ++SG  +N      +  F  M+  G+ P     E    N LG         
Sbjct: 84  RRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGP-------- 135

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS---ISSVVS 331
                 H +         T++V Y            + + L     P   +   ++S++ 
Sbjct: 136 -----KHTLAASHCHSGPTLMVKY------------WGQRLWRPPAPAAATTVHLASLLQ 178

Query: 332 SCAKLASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           SC +   L  G+++H + V+ G       +++ LI MY  C     A  +F  MP RN V
Sbjct: 179 SCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAV 238

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
           SW ++++G +QN    +ALA +  + +  + P  F   S   A        R ++   + 
Sbjct: 239 SWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARS--CTA 296

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           SA  G    L   + + ++  +   + +A  +   +P K +++ W+ ++   A  G ++ 
Sbjct: 297 SASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKNGSLEA 355

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACG 540
             ++ R +     + A  ++  S + A+ G
Sbjct: 356 AVLSFRDMKREGLVGADQHVFCSVLSASGG 385



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 102/246 (41%), Gaps = 28/246 (11%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++S++ SC +   L  G+++H + V+ G       +++ LI MY  C     A  +F  M
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAM 82

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
           P RN VSW ++++G +QN    +ALA +  + +  + P    + +     L       G 
Sbjct: 83  PRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTL-------GP 135

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
            H  + S  H   P+L     M+   G+      A       P    ++  ++LL  C  
Sbjct: 136 KHTLAASHCHS-GPTL-----MVKYWGQRLWRPPA-------PAAATTVHLASLLQSCGR 182

Query: 505 KGDIKHGEMAARHLFELEPINAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            GD++ G +    L       A  ++   L  MY+ C        + ++M  +N     A
Sbjct: 183 AGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRN-----A 237

Query: 563 YSWIEI 568
            SW  +
Sbjct: 238 VSWTTL 243


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 322/598 (53%), Gaps = 73/598 (12%)

Query: 59   TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            TFL N L+  YA+ G+L  AR +FD++P  +  S+NALLSAHAR G   D RALF  +P 
Sbjct: 795  TFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPD 854

Query: 119  RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
             D  SYN  IA  A      +AL   + M  D F    Y+  SAL+ACA   D R G Q+
Sbjct: 855  PDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQV 914

Query: 179  HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            H  +       +V++ +AL DMYAK    ++AR +F+ M  RN+VSWN +I+ Y +NG  
Sbjct: 915  HALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPV 974

Query: 239  KKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------- 267
             + + LF  M   G  PDEVT+++++ AC                               
Sbjct: 975  GEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNA 1034

Query: 268  -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVG------------------------- 297
                  + GR   A  +F  +  +  V  T++I G                         
Sbjct: 1035 LVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAW 1094

Query: 298  ------YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH----- 346
                  Y QNG+EE+AL LF  +  E V P  ++  +V+++C  +A L  GQ  H     
Sbjct: 1095 NVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLK 1154

Query: 347  -GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
             G     G + D+ V ++L+DMY K G  DD   VF  M  R+ VSWN+MI G+AQNG+ 
Sbjct: 1155 EGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGHAQNGRA 1214

Query: 406  LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             +AL L++++L     PDS T + VLSAC H+ L E G+ +F S++  HGI PS DHY C
Sbjct: 1215 KDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGIIPSQDHYTC 1274

Query: 466  MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
            MI+LLGR+  + +  +LIK +  +P++++W++LL  C +  +++ GE AA  LFEL+P N
Sbjct: 1275 MIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAGKLFELDPRN 1334

Query: 526  AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            +GPY++LSNMYA  G+W DV  +RSSMK + V K    SWIEI  KV  F++ D  HP
Sbjct: 1335 SGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFLARDNGHP 1392



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 146/525 (27%), Positives = 245/525 (46%), Gaps = 74/525 (14%)

Query: 78  ARDLFDKMPLRD----IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           AR L   +  RD    +I   AL+  +     + D R  FD +   +++S+N  +  +  
Sbjct: 170 ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHL 229

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G    A+ +F RM      P  YT   A+ AC     L  G+ IH  ++      +V V
Sbjct: 230 AGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHV 289

Query: 194 RNALTDMYAKGGEIDKARWLF-------------------------------DRMNNRNL 222
           R+++ DMYAK G +D A+ LF                               + M  RNL
Sbjct: 290 RSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNL 349

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
           VSWN M++GY+++      + LFQ+M+      D +T+ ++L AC               
Sbjct: 350 VSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAF 409

Query: 269 ---------------------QTGRIDDAGRL--FHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                + G +  A RL  F +  E+D+  W ++I GY ++   E
Sbjct: 410 AIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSE 469

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
            AL    +M SE V P++ + SS +++CA +  L  G  +H   +  G + D ++ S LI
Sbjct: 470 AALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLI 528

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMYCKC   D +  +F   P+R+V+ WNSMI G A +G+    L L+D++ ++ +K DS 
Sbjct: 529 DMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSV 588

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           TF+  L +C+       G+++F ++     I P ++HY CMI LLG+   + +  D ++ 
Sbjct: 589 TFLGALVSCISEGHVRLGRSYF-TLMMDESIIPRIEHYECMIELLGKHGCMVELEDFVEH 647

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           +P +P + +W  +   C   G+ K GE AA+ + +  P+    ++
Sbjct: 648 MPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFV 692



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 136/488 (27%), Positives = 216/488 (44%), Gaps = 73/488 (14%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           +N  + + A  GSV D R LFD MP+RD  S+N  I   +  G   EAL +FS M     
Sbjct: 88  FNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGI 147

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P D T  S L+ CA+ LDL   +Q+HG I   +   NV +  AL D+Y     +  AR 
Sbjct: 148 RPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARR 207

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
            FD +   N +SWN+++  Y   G     +D+F  M   G+ P   TVS+ + AC     
Sbjct: 208 AFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNA 267

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDNV-------- 289
                                          + G +D A  LF++   KD V        
Sbjct: 268 LEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSG 327

Query: 290 -----------------------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                                   W  M+ GY ++     AL+LF +M  E    D  ++
Sbjct: 328 LASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITL 387

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA--WTVFNMM 384
            SV+S+C  +  +  G+ VH  A+  G     ++ +AL+ MY KCG    A    +F M 
Sbjct: 388 GSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMG 447

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG- 443
             R+  SWNS+I+GY ++     AL    K +Q  + P+  TF S L+AC +  L ++G 
Sbjct: 448 SERDSYSWNSLISGYERHSMSEAALYALTK-MQSEVTPNQSTFSSALAACANIFLLKQGM 506

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           Q H   I   + I   L   + +I++  +    D ++ + ++ P + + ++W++++  CA
Sbjct: 507 QIHAYMIRKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARPSR-DVILWNSMIFGCA 563

Query: 504 MKGDIKHG 511
             G  ++G
Sbjct: 564 YSGKGEYG 571



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 137/310 (44%), Gaps = 66/310 (21%)

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
            F+ N   +  A  G +  AR LFD M  R+  SWN +I+   + G P + + LF  M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 251 LGLNPDEVTVSNILGAC--------------------FQTGRI---------------DD 275
           LG+ P + T++++L  C                    FQ+  I                D
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLAD 204

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R F  I E + + W  ++  Y   G  + A+ +F  MLS  VRP  +++S  V +C  
Sbjct: 205 ARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRD 264

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--------- 386
             +L  G+ +H   +  G +  + V S+++DMY KCG  D A ++FN+ P          
Sbjct: 265 NNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSI 324

Query: 387 ----------------------RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
                                 RN+VSWN+M+ GY ++     AL L+ ++ QE  + D+
Sbjct: 325 VSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDA 384

Query: 425 FTFVSVLSAC 434
            T  SVLSAC
Sbjct: 385 ITLGSVLSAC 394



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 163/344 (47%), Gaps = 39/344 (11%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           +  VL C   N +E  + + + +  + YE +   + + ++  YAK G +  A+ LF+  P
Sbjct: 256 SHAVLACRDNNALEEGRCIHAFVLRHGYE-HHVHVRSSVVDMYAKCGAMDAAQSLFNLAP 314

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           ++D++   +++S  A  G + D + +F+ M  R+ VS+N  + G+        AL +F +
Sbjct: 315 MKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQ 374

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+++  E    T  S L+AC  +LD+ +G+++H   +      +  ++NAL  MY+K G 
Sbjct: 375 MRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGC 434

Query: 207 IDKAR--WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           +  A    LF+  + R+  SWN +ISGY ++   +  +    +MQ   + P++ T S+ L
Sbjct: 435 LRSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAALYALTKMQS-EVTPNQSTFSSAL 493

Query: 265 GAC-----FQTG------------RIDD------------------AGRLFHVIKEKDNV 289
            AC      + G             IDD                  + R+F     +D +
Sbjct: 494 AACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVI 553

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            W +MI G   +GK E  L LF+EM  + ++ D  +    + SC
Sbjct: 554 LWNSMIFGCAYSGKGEYGLDLFDEMQKQGIKADSVTFLGALVSC 597



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 35/246 (14%)

Query: 189  GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
               F+ N L   YA+ G +  AR +FD + + N  S+N ++S + + G+P     LF  +
Sbjct: 793  AETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAI 852

Query: 249  QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                  PD                              D   +  +I    Q+ +  DAL
Sbjct: 853  ------PD-----------------------------PDQCSYNAVIAALAQHSRGADAL 877

Query: 309  ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            +    M ++D   + +S +S +S+CA       G  VH          D+ + SAL+DMY
Sbjct: 878  LFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMY 937

Query: 369  CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
             KC   ++A  VF  MP RN+VSWNS+I  Y QNG   EAL L+  +++    PD  T  
Sbjct: 938  AKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLA 997

Query: 429  SVLSAC 434
            SV+SAC
Sbjct: 998  SVMSAC 1003



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 9/138 (6%)

Query: 22   TEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHFYAKSGKLF 76
            T   Y  ++  C  V D++L ++   H+       +F   +  F+ N L+  Y K+G + 
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184

Query: 77   YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFA 132
                +F++M  RD +SWNA++  HA++G  +D   LF++M       DSV+    ++   
Sbjct: 1185 DGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACG 1244

Query: 133  NKGFSREALQVFSRMQKD 150
            + G   E  + F  M +D
Sbjct: 1245 HSGLVEEGRRYFRSMTED 1262


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 334/574 (58%), Gaps = 39/574 (6%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           Y   I GF + G   EA+Q++SRM  +   P +Y   S L AC   L LR G+++H + +
Sbjct: 115 YTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRAL 174

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 N  VR  + ++Y K GE+  AR +F+ M                          
Sbjct: 175 KLGFSSNRLVRLRIMELYGKCGELGDARRVFEEM-------------------------- 208

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQ-TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                      P++V  S ++ + +   G +++AG +F  ++ KD VCWT MI G+ +N 
Sbjct: 209 -----------PEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNE 257

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           +   AL  F  M  E+VRP++F+I  V+S+C++L +L  G+ VH       ++ +L V +
Sbjct: 258 ETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGN 317

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           ALI+MY +CG  D+A TVF+ M  R+V+++N+MI+G + NG+  +A+ L+  ++   L+P
Sbjct: 318 ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRP 377

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
            + TFV VL+AC H  L + G   F S++  + + P ++HY CM++LLGR   +++A DL
Sbjct: 378 TNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDL 437

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+++   P+ ++  TLLS C M  +++ GE  A+ L +    ++G Y++LS++YA+ G+W
Sbjct: 438 IRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKW 497

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           ++ A +R+ MK   ++K    S IE++N++H+F+  D  HP+ E IYE+L +L + L+  
Sbjct: 498 KEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLE 557

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P  ++VL D ++ EK  ++  HSE+LA+ Y LI      T IR+MKN+RVC DCH  
Sbjct: 558 GYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLIST-EPCTMIRVMKNLRVCYDCHSA 616

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  + I  R I++RD NRFH+F  G CSC D W
Sbjct: 617 IKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 157/287 (54%), Gaps = 9/287 (3%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           R++  Y K G+L  AR +F++MP  D+++   ++S+++  G V++  A+F ++  +D+V 
Sbjct: 187 RIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVC 245

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   I GF     +  AL+ F  MQ +   P ++T V  L+AC+QL  L  G+ +H  + 
Sbjct: 246 WTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 305

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              +  N+FV NAL +MY++ G ID+A+ +FD M +R+++++N MISG   NG+ ++ I+
Sbjct: 306 KFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIE 365

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGY 298
           LF+ M    L P  VT   +L AC   G +D    +FH +     V      +  M+   
Sbjct: 366 LFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLL 425

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
            + G+ E+A  L   M    + PD   + +++S+C    +L  G+ V
Sbjct: 426 GRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQV 469



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 133/285 (46%), Gaps = 32/285 (11%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G + D   V  +L +C +   ID A R+F      +   +T +I G+  +G   +A+ L+
Sbjct: 76  GHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLY 135

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           + ML E + PD + ++S++ +C    +L  G+ VH +A+ LG   + LV   ++++Y KC
Sbjct: 136 SRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKC 195

Query: 372 GVTDDAWTVFNMMPT------------------------------RNVVSWNSMINGYAQ 401
           G   DA  VF  MP                               ++ V W +MI+G+ +
Sbjct: 196 GELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVR 255

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           N +   AL  +  +  EN++P+ FT V VLSAC      E G+    S      I  +L 
Sbjct: 256 NEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR-WVHSYMRKFEIELNLF 314

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
               +IN+  R   +D+A  +   +  + + + ++T++S  +M G
Sbjct: 315 VGNALINMYSRCGSIDEAQTVFDEMKDR-DVITYNTMISGLSMNG 358



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 65/235 (27%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+++  +E+ + + S+M     E N  F+ N L++ Y++ G +  A+ +FD+M  RD+I+
Sbjct: 288 CSQLGALEIGRWVHSYMRKFEIELNL-FVGNALINMYSRCGSIDEAQTVFDEMKDRDVIT 346

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           +                               NT I+G +  G SR+A+++F  M   R 
Sbjct: 347 Y-------------------------------NTMISGLSMNGKSRQAIELFRVMVGRRL 375

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            PT+ T V  LNAC+           HG +V  + G  +F  +++   Y    +I+    
Sbjct: 376 RPTNVTFVGVLNACS-----------HGGLV--DFGFEIF--HSMARDYRVEPQIEH--- 417

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
                       +  M+    + G+ ++  DL + M+   + PD + +  +L AC
Sbjct: 418 ------------YGCMVDLLGRVGRLEEAYDLIRTMK---MTPDHIMLGTLLSAC 457



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H + +  G   D  +   L+    KC   D A  +F      NV  + ++I+G+  +G 
Sbjct: 68  IHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGN 127

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            LEA+ LY ++L E++ PD++   S+L AC
Sbjct: 128 YLEAIQLYSRMLHESILPDNYLMASILKAC 157


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/558 (35%), Positives = 323/558 (57%), Gaps = 37/558 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  C     L +G+ +H  I+      ++ + N L +MYAK G +++AR +F++M  R+ 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL----------------GA 266
           V+W  +ISGY ++ +P   +  F +M   G +P+E T+S+++                G 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGF 186

Query: 267 CFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           C + G                    +DDA  +F  ++ +++V W  +I G+ +    E A
Sbjct: 187 CVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKA 246

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF  ML +  RP  FS +S+  +C+    L  G+ VH   +  G        + L+DM
Sbjct: 247 LELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDM 306

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y K G   DA  +F+ +  R+VVSWNS++  YAQ+G   EA+  ++++ +  ++P+  +F
Sbjct: 307 YAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISF 366

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           +SVL+AC H+ L + G ++++ +    GI P   HY  +++LLGR+ D+++A+  I+ +P
Sbjct: 367 LSVLTACSHSGLLDEGWHYYELMKK-DGIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMP 425

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P + IW  LL+ C M  + + G  AA H+FEL+P + GP+++L N+YA+ GRW D A 
Sbjct: 426 IEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDAAR 485

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
           +R  MK   VKK  A SW+EI+N +H FV+ D  HP+ E I  +  +++ K++E G+ P+
Sbjct: 486 VRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYVPD 545

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           T  V+    ++E+  ++ YHSEK+ALA+ L+  P G T I I KNIRVCGDCH  +K AS
Sbjct: 546 TSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGST-IHIKKNIRVCGDCHTAIKLAS 604

Query: 668 DIIGRTIILRDSNRFHHF 685
            ++GR II+RD+NRFHHF
Sbjct: 605 KVVGREIIVRDTNRFHHF 622



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 168/346 (48%), Gaps = 36/346 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI+  N LL+ +A+ GS+++ R +F+KMP RD V++ T I+G++      +AL  F++M 
Sbjct: 94  DIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQML 153

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  + P ++T  S + A A       G Q+HG  V      NV V +AL D+Y + G +D
Sbjct: 154 RFGYSPNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMD 213

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD + +RN VSWN +I+G+ +    +K ++LFQ M   G  P   + +++ GAC 
Sbjct: 214 DAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACS 273

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
            T                                   G I DA ++F  + ++D V W +
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 333

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  Y Q+G  ++A+  F EM    +RP++ S  SV+++C+    L  G   +      G
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDG 393

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
           +  +      ++D+  + G  + A      MP     + W +++N 
Sbjct: 394 IVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNA 439



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 154/331 (46%), Gaps = 43/331 (12%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           LL  Y + G +  A+ +FD +  R+ +SWNAL++ HAR    +                 
Sbjct: 202 LLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE----------------- 244

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         +AL++F  M +D F P+ +++ S   AC+    L +GK +H  ++ 
Sbjct: 245 --------------KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                  F  N L DMYAK G I  AR +FDR+  R++VSWN +++ Y ++G  K+ +  
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F+EM+ +G+ P+E++  ++L AC  +G +D+    + ++K KD +      + T++    
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMK-KDGIVPEAWHYVTVVDLLG 409

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDL 358
           + G    AL    EM    + P      +++++C    +   G   +    V  +D DD 
Sbjct: 410 RAGDLNRALRFIEEM---PIEPTAAIWKALLNACRMHKNTELG--AYAAEHVFELDPDDP 464

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
                L ++Y   G  +DA  V   M    V
Sbjct: 465 GPHVILYNIYASGGRWNDAARVRKKMKESGV 495



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 130/285 (45%), Gaps = 44/285 (15%)

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           N++    +  D+   ++++  C     L  G++VH   +      D+++ + L++MY KC
Sbjct: 49  NDLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKC 108

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  ++A  VF  MP R+ V+W ++I+GY+Q+ +  +AL  ++++L+    P+ FT  SV+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168

Query: 432 SA--------CLHA---------------------DLFER------GQNHFDSISAVHGI 456
            A        C H                      DL+ R       Q  FD++ + + +
Sbjct: 169 KAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDV 228

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +     +  +I    R S  +KA++L + +     +P+   +++L   C+  G ++ G+ 
Sbjct: 229 S-----WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKW 283

Query: 514 AARHLFEL-EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
              ++ +  E + A     L +MYA  G   D   I   +  ++V
Sbjct: 284 VHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDV 328



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 5/155 (3%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  L   C+    +E  K + ++M +   E    F  N LL  YAKSG +  AR +FD+
Sbjct: 264 SYASLFGACSSTGFLEQGKWVHAYM-IKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDR 322

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTAIAGFANKGFSREA 140
           +  RD++SWN+LL+A+A+ G  ++    F++M    IR + +S+ + +   ++ G   E 
Sbjct: 323 LAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEG 382

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
              +  M+KD   P  + +V+ ++   +  DL R 
Sbjct: 383 WHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/632 (36%), Positives = 351/632 (55%), Gaps = 62/632 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDL---RALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +RD ++   LL   A S   +DL   R +F  M   +  SYNT I   +      +AL V
Sbjct: 40  IRDPLAAAELLRFSAVSDH-RDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLV 98

Query: 144 FSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           F  M +D   EP  +T  S   AC +   LR G+Q+HG  V   L  + FV + +  MY 
Sbjct: 99  FIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYL 158

Query: 203 KGGEIDKARWLF---------------DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             G ++ A  LF                R  + ++V WN+MI GY++ G+ +   +LF E
Sbjct: 159 SCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDE 218

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           M                                    ++  V W  MI GY Q+G  ++A
Sbjct: 219 M-----------------------------------PQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV--LGVDDDLLVSSALI 365
           + +F EM   +V P+  ++ SV+ + ++L +L  G+ VH  AV   +GVDD  ++ SALI
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDD--VLGSALI 301

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY KCG  + A  VF  +P RNVV+W+++I G A +G+  + L  ++ + +  + P   
Sbjct: 302 DMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDV 361

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           T++ +LSAC HA L   G+  FD +  V G+ P ++HY CM++LLGR+  ++++ +LI +
Sbjct: 362 TYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILN 421

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP+ +IW  LL  C M G+++ G+  A HL EL P ++G Y+ LSN+YA+ G WE V
Sbjct: 422 MPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGV 481

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
           A +R  MK  +V+K    SWIE+D  +H+F+ ED +HP+++ I+  L ++ + L   G+ 
Sbjct: 482 AKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYR 541

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHLFMK 664
           PNT  VL +  EE+K  S+ YHSEK+A+A+ LI  +P   TP+RI KN+R+C DCH  +K
Sbjct: 542 PNTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQ--TPLRITKNLRICEDCHSSIK 599

Query: 665 FASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             S I  R II+RD  RFHHFV G+CSC D W
Sbjct: 600 LISKIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/226 (32%), Positives = 121/226 (53%), Gaps = 34/226 (15%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L N ++  Y + G+L  AR+LFD+MP R ++SWN +++ +A+SG                
Sbjct: 195 LWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHF-------------- 240

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                            +EA++VF  MQ     P   T VS L A ++L  L  GK +H 
Sbjct: 241 -----------------KEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHL 283

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             V  N+G +  + +AL DMYAK G I+KA  +F+ +  RN+V+W+ +I+G   +G+ K 
Sbjct: 284 YAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKD 343

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF--HVIK 284
            +D F++M+  G+ P +VT   +L AC   G +++ GR F  H+++
Sbjct: 344 TLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNE-GRWFFDHMVR 388



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 188/452 (41%), Gaps = 118/452 (26%)

Query: 65  LLHFYAKSG--KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           LL F A S    L YAR +F  M   +  S+N L+ A + S    D              
Sbjct: 49  LLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRALSESNDPCD-------------- 94

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHG- 180
                            AL VF  M +D   EP  +T  S   AC +   LR G+Q+HG 
Sbjct: 95  -----------------ALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGL 137

Query: 181 ---------KIVVGN------------------------------------LGGNVFVRN 195
                    + VV N                                    + G+V + N
Sbjct: 138 AVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWN 197

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            + D Y + GE++ AR LFD M  R++VSWN+MI+GY ++G  K+ +++F+EMQ+  + P
Sbjct: 198 VMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPP 257

Query: 256 DEVT------------------------------VSNILGACF-----QTGRIDDAGRLF 280
           + VT                              V ++LG+       + G I+ A ++F
Sbjct: 258 NYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVF 317

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             + +++ V W+T+I G   +G+ +D L  F +M    V P   +   ++S+C+    + 
Sbjct: 318 EGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVN 377

Query: 341 HGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            G+      V V G++  +     ++D+  + G+ +++  +   MP + + V W +++  
Sbjct: 378 EGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGA 437

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
              +G ++E      + L E    DS ++V++
Sbjct: 438 CKMHG-NVEMGKRVAEHLMELAPHDSGSYVAL 468


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/786 (29%), Positives = 389/786 (49%), Gaps = 127/786 (16%)

Query: 5    HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
            H + +    L+ +G     E Y+  +  CTRV D+ L   +   +    ++ +  +L   
Sbjct: 656  HIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDV-YLRCA 714

Query: 65   LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
            L++FY +   L  A  +F +MP  + + WN  +  + +S  +Q                 
Sbjct: 715  LMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQ----------------- 757

Query: 125  NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                          + +++F +MQ    +    T V  L AC ++  L   KQIHG +  
Sbjct: 758  --------------KGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFR 803

Query: 185  GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN----------------------- 221
              L  +V + N L  MY+K G+++ AR +FD M NRN                       
Sbjct: 804  FGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSL 863

Query: 222  ------------LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
                        +V+WN ++SG+  +G  ++ +++ Q MQ  G  P+  +++++L A  +
Sbjct: 864  FYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISE 923

Query: 270  TGRID-----------------------------------DAGRLFHVIKEKDNVCWTTM 294
             G ++                                    A  +F  +K ++   W ++
Sbjct: 924  LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSL 983

Query: 295  IVGYTQNGKEEDALILFNEMLSEDVRPD------------------------KFSISSVV 330
            + GY+  G  EDAL L N+M  E ++PD                          SI+ ++
Sbjct: 984  VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLL 1043

Query: 331  SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
             +CA L+ L  G+ +H  ++  G  +D+ V++ALIDMY K     +A  VF  +  + + 
Sbjct: 1044 RACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLA 1103

Query: 391  SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
            SWN MI G+A  G   EA+++++++ +  + PD+ TF ++LSAC ++ L   G  +FDS+
Sbjct: 1104 SWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSM 1163

Query: 451  SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
               + I P L+HY CM++LLGR+  +D+A DLI ++P KP++ IW  LL  C +  ++  
Sbjct: 1164 ITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXF 1223

Query: 511  GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
             E AA++LF+LEP N+  YI++ N+Y+   RWED+  +R  M +  V+    +SWI+I+ 
Sbjct: 1224 AETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQ 1283

Query: 571  KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            +VH F S+++ HP+   IY EL +L+ ++++ G+ P+   V  +  E EK K +  H+EK
Sbjct: 1284 RVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEK 1343

Query: 631  LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
            LA+ Y LIK   G  PIR++KN R+C DCH   K+ S +  R + LRD  RFHHF  G C
Sbjct: 1344 LAITYGLIKMKAG-EPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKC 1402

Query: 691  SCKDNW 696
            SC D W
Sbjct: 1403 SCNDFW 1408



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 118/517 (22%), Positives = 221/517 (42%), Gaps = 101/517 (19%)

Query: 119  RDSVSYNTAIAGF-ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            R+ + +N+ +  F ++ G     L+VF  +           +  AL  C +++D+  G +
Sbjct: 636  RNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGME 695

Query: 178  IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
            IHG ++      +V++R AL + Y +   ++KA  +F  M N   + WN  I   L++ +
Sbjct: 696  IHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEK 755

Query: 238  PKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------ 267
             +K ++LF++MQ   L  +  T+  +L AC                              
Sbjct: 756  LQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNP 815

Query: 268  -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                  + G+++ A R+F  ++ ++   W +MI  Y   G   DA  LF E+ S D++PD
Sbjct: 816  LISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875

Query: 323  -----------------------------------KFSISSVVSSCAKLASLYHGQVVHG 347
                                                 S++SV+ + ++L  L  G+  HG
Sbjct: 876  IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHG 935

Query: 348  KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
              +  G D D+ V ++LIDMY K      A  VF+ M  RN+ +WNS+++GY+  G   +
Sbjct: 936  YVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFED 995

Query: 408  ALALYDKLLQENLKPD------------------------SFTFVSVLSACLHADLFERG 443
            AL L +++ +E +KPD                        S +   +L AC    L ++G
Sbjct: 996  ALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKG 1055

Query: 444  QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            +     +S  +G    +     +I++  +SS +  A  + + + +K  +  W+ ++   A
Sbjct: 1056 K-EIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLA-SWNCMIMGFA 1113

Query: 504  MKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
            + G    G+ A     E++ +  GP  I  + + +AC
Sbjct: 1114 IFG---LGKEAISVFNEMQKVGVGPDAITFTALLSAC 1147



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/357 (21%), Positives = 148/357 (41%), Gaps = 52/357 (14%)

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN-GKEEDALILFN 312
           NPD     N++ +    G    A  +F+V   ++ + W + +  +  + G     L +F 
Sbjct: 605 NPD-AAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 663

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           E+  + V  D    S  + +C ++  ++ G  +HG  +  G D D+ +  AL++ Y +C 
Sbjct: 664 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A  VF+ MP    + WN  I    Q+ +  + + L+ K+    LK ++ T V VL 
Sbjct: 724 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC             ++   +HG           +   G  SDV                
Sbjct: 784 AC-------GKMGALNAAKQIHGY----------VFRFGLDSDVS--------------- 811

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            + + L+S+ +  G +   E+A R    +E  N   +  + + YAA G   D  S+   +
Sbjct: 812 -LCNPLISMYSKNGKL---ELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYEL 867

Query: 553 KSKNVKK-FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           +S ++K     ++ +   + +H +              EE+  +++++Q  GF PN+
Sbjct: 868 ESSDMKPDIVTWNCLLSGHFLHGY-------------KEEVLNILQRMQGEGFKPNS 911


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/718 (31%), Positives = 370/718 (51%), Gaps = 77/718 (10%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G + +  +Y  L   C ++  +   +     M      P   FL N +L  Y K G L  
Sbjct: 5   GISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNP-PEFLENSVLKMYCKCGSLAD 63

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FD+M  R+++SWN ++SA+A +G       +FDK              GF      
Sbjct: 64  ARKVFDEMRERNLVSWNTIISAYAENG-------VFDK--------------GFC----- 97

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
                +FS M +   +P   T++  L +      L  GKQIH   +   LG N  V  A+
Sbjct: 98  -----MFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAI 152

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
           ++MY K G ++ A  +F++M+ +N V+W  ++ GY +  +    + LF +M   G+  DE
Sbjct: 153 SNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDE 212

Query: 258 VTVSNILGAC-----FQTGR------------------------------IDDAGRLFHV 282
              S +L AC        GR                              ++ A + F  
Sbjct: 213 YVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEW 272

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           I E ++V W+ +I GY Q G+ E+AL  F  + +  V  + F+ +S+  +C+ LA    G
Sbjct: 273 ISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSG 332

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
              H  A+   +       SA+I MY +CG  D A  VF  +   + V+W ++I GYA  
Sbjct: 333 AQAHADAIKSSLVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQ 392

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   EAL L+ ++    ++P++ TF++VL+AC H+ L   G+ + +S+S+ +G+  ++DH
Sbjct: 393 GNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDH 452

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CM+++  R+  + +A++LI+S+P  P+++ W  LL  C    +++ GE+AA +LF+L+
Sbjct: 453 YDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLD 512

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P +   YI++ N+YA+ G+W++ A++R  M  +N++K  + SWI +  KVH+F+  D+ H
Sbjct: 513 PEDTAGYILMFNLYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHH 572

Query: 583 PETEIIYEELSKLIKKL--QEAGFSPNTKLVLHDTQEE--EKVKSICYHSEKLALAYCLI 638
           P+TE IY +L  L   +  +E G      L   D      E+ + +  HSE+LALA+ LI
Sbjct: 573 PQTEEIYSKLEALNDSVIKEETGL-----LTEEDVSNSLPERKEQLLVHSERLALAFGLI 627

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P    P+ + KN+R C DCH F K  S I GR I++RDS RFHHF  G CSC D W
Sbjct: 628 STPSS-APVVVFKNLRACKDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 48/232 (20%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR--LL 66
           +  ++L +R        YT +   C+ + D       Q+H D         + H    ++
Sbjct: 299 KTFESLRTRSVDINSFTYTSIFQACSALADFNSGA--QAHADA-IKSSLVAYQHGESAMI 355

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
             Y++ G+L YA  +F+ +   D ++W A+++ +A  G+                     
Sbjct: 356 TMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGN--------------------- 394

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
                     + EAL++F RMQ     P   T ++ L AC+       G  I G+  + +
Sbjct: 395 ----------APEALKLFRRMQDCGVRPNAVTFIAVLTACSH-----SGLVIEGRQYLES 439

Query: 187 LGGNVFVR------NALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISG 231
           +  N  V       + + D+Y++ G + +A  L   M  + + +SW  ++ G
Sbjct: 440 MSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDAMSWKCLLGG 491


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/643 (35%), Positives = 350/643 (54%), Gaps = 39/643 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+I  N L++ + + G +   R +FD MP R++VS N  ++G+A+ G   +AL +   ++
Sbjct: 44  DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALAL---LK 100

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F   +Y   +AL+A A +     G+Q HG  V   L  + +V NA+  MY +   ++
Sbjct: 101 AADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVE 160

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F+ ++  ++ ++N MI+G+L  G+    I + + M       D V+   +LG C 
Sbjct: 161 DAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCA 220

Query: 269 QT--------------------------------GRID---DAGRLFHVIKEKDNVCWTT 293
            T                                G+ D   DA   F V+ EK+ V WT 
Sbjct: 221 STKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTA 280

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           ++  YTQN + EDAL LF ++  E VRP++F+ +  ++SCA LA+L +G  +   A+  G
Sbjct: 281 VMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTG 340

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
               L V +AL++MY K G   DAW VF  MP R+VVSWNS+I GYA +G   EA+ ++ 
Sbjct: 341 HWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFH 400

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            +L   + P   TFV VL AC    L + G  + + +    GI P  +HY CM+ LL R+
Sbjct: 401 DMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRA 460

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +D+A   I S     + + W +LLS C +  +   G   A  + +L+P + G Y++LS
Sbjct: 461 GRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVGTYVLLS 520

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA   RW+ V  +R  M+ + V+K    SWI++ ++VH F SED+ H     I  +L 
Sbjct: 521 NMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQITIKLK 580

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           +LI +++  G+ PN  +VLHD + E+K + + YHSEK+ALA+ LI  P G T IRIMKN+
Sbjct: 581 ELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGET-IRIMKNL 639

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH+ +K  S +  R I++RD+ RFH    G CSC D W
Sbjct: 640 RICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 168/378 (44%), Gaps = 46/378 (12%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           +Y  ++  C    ++ L  ++ +       E N  ++ + L+  Y K      A   F+ 
Sbjct: 211 SYVAVLGHCASTKELLLGCQVHAQALKRRLEQNV-YVGSALVDMYGKCDCARDAHSAFEV 269

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +P ++++SW A+++A+ ++   +D                               ALQ+F
Sbjct: 270 LPEKNVVSWTAVMTAYTQNERFED-------------------------------ALQLF 298

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             ++ +   P ++T+  ALN+CA L  L+ G  +    +     G + V NAL +MY+K 
Sbjct: 299 LDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALSVCNALMNMYSKS 358

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G I  A  +F  M  R++VSWN +I GY  +G  ++ + +F +M L  + P  VT   +L
Sbjct: 359 GSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVL 418

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC Q G +D+     +++ ++  +      +T M+    + G+ ++A      +LS  +
Sbjct: 419 LACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQF---ILSNCI 475

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
             D  +  S++SSC    +   G  V  + + L   +D+     L +MY K    D    
Sbjct: 476 GTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLK-PNDVGTYVLLSNMYAKANRWDGVVK 534

Query: 380 VFNMMPTRNV-----VSW 392
           V  +M  R V     VSW
Sbjct: 535 VRKLMRERGVRKEPGVSW 552



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 342 GQVVHGKAV----VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           G++  GKA+    +     D++  + LI  Y KCG    A  +F+ MP+RN VS N +++
Sbjct: 25  GELCTGKAIHAQMIRAAHFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMS 84

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
           GYA  G+  +ALAL   L   +   + +   + LSA  H   +  G+ 
Sbjct: 85  GYASAGRHSDALAL---LKAADFSLNEYVLSTALSAAAHVRSYGMGRQ 129


>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
 gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
          Length = 714

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/702 (32%), Positives = 360/702 (51%), Gaps = 72/702 (10%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           T F HN ++  YA++G L  A   FD+ P +D++SWN +LS +AR GS +D +  FD+MP
Sbjct: 22  TAFSHNVMVAAYAQNGYLDLAARTFDRTPNKDVVSWNGMLSGYARYGSFRDAKLFFDEMP 81

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            +++VSYNT I+ FA +G   EA  +F+ M K R   T    ++      Q       ++
Sbjct: 82  YKNTVSYNTLISAFARQGNLAEARNLFNSM-KIRDAATWNVLIAGYT---QRCLCTHARE 137

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           I  +  V N    V   N +   YA+ G +D A  LF  M   N V WN +ISG  +N +
Sbjct: 138 IFDRAPVRN----VVTWNTMIGGYAQAGHLDNATELFGLMPQWNEVCWNALISGMGRNRR 193

Query: 238 PKKCIDLFQEM-------------------------QLLGLNP--DEVTVSNILGACFQT 270
               ++LFQ +                          L    P  D V  + I+ A   +
Sbjct: 194 LPDALELFQALPFRDMVSWIAMIQGCVHSGDLHRAWDLFKRMPLTDVVIWTAIVTAFAHS 253

Query: 271 GRIDDAGRLFHVIKEKDN--------------------------------VCWTTMIVGY 298
           G + +A  LF  I  KD                                 + W  ++  +
Sbjct: 254 GFLQEARDLFDAIPIKDAAAVNAMIAAYGLHGEIARAKDLFDSAGDLRDVISWNALLAAF 313

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           +QNG    AL +F  M  E + PD  S  S + +C  L +L  G+++H + ++L    ++
Sbjct: 314 SQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLH-EELLLASQGEI 372

Query: 359 LV----SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
            V    ++AL++ Y KCG  D+A ++F+ M   + +  NSM+  YAQ+G+  EA  L+ +
Sbjct: 373 FVEASLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAADLFQR 432

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
            +   + PD+ TFVS++SAC HA L + G  +F S+     + P   HY CM++LL R+ 
Sbjct: 433 AILSGIHPDAVTFVSMVSACSHAGLLDLGHRYFLSLVGDFALAPHAAHYTCMVDLLARTG 492

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            +    DL+ ++P +P    W +LL+ C   GD+  G   AR      P+ + PY++LS 
Sbjct: 493 HLMDGEDLLDAMPFQPEYTAWKSLLAGCRTHGDVGRGARLARRATNANPVCSSPYVLLSR 552

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +Y A G+  D  S+R +M ++ ++K A  S I I  + H+FV+  + HPE   I +EL  
Sbjct: 553 LYDAAGKHGDGISVRKAMDARRLRKPAGLSSITIKGRAHEFVAGGKNHPEISAILDELHS 612

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L  K++EAG+ P+T  VLHD  +EEK +S+ +HSEKLA+ + +I       P+ ++KN+R
Sbjct: 613 LNAKMREAGYVPDTSNVLHDFDDEEKEQSLSFHSEKLAVVFGMISTRGRSDPLFVVKNLR 672

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +C DCH   KF S I  R I +RD++RFHHF  G C+C D W
Sbjct: 673 MCTDCHTATKFMSRIAKRAITVRDAHRFHHFQDGACACADFW 714



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 133/325 (40%), Gaps = 57/325 (17%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY + G +  A   FD + N    S N+M++ Y +NG        F        N D V+
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGYLDLAARTFDRTP----NKDVVS 56

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            + +L    + G   DA   F  +  K+ V + T+I  + + G   +A  LFN M   D 
Sbjct: 57  WNGMLSGYARYGSFRDAKLFFDEMPYKNTVSYNTLISAFARQGNLAEARNLFNSMKIRDA 116

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
                 I+     C       H + +  +A V  V    +  + +I  Y + G  D+A  
Sbjct: 117 ATWNVLIAGYTQRCL----CTHAREIFDRAPVRNV----VTWNTMIGGYAQAGHLDNATE 168

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F +MP  N V WN++I+G  +N +  +AL L+  L       D  ++++++  C+H   
Sbjct: 169 LFGLMPQWNEVCWNALISGMGRNRRLPDALELFQALPFR----DMVSWIAMIQGCVH--- 221

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
                                            S D+ +A DL K +P   + +IW+ ++
Sbjct: 222 ---------------------------------SGDLHRAWDLFKRMP-LTDVVIWTAIV 247

Query: 500 SVCAMKGDIKHGEMAARHLFELEPI 524
           +  A  G ++     AR LF+  PI
Sbjct: 248 TAFAHSGFLQE----ARDLFDAIPI 268



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 15/191 (7%)

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY +CG   DA   F+ +      S N M+  YAQNG     L L  +        D  +
Sbjct: 1   MYGRCGCVADAVICFDSIRNPTAFSHNVMVAAYAQNGY----LDLAARTFDRTPNKDVVS 56

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           +  +LS       F   +  FD +   + ++     Y  +I+   R  ++ +A +L  S+
Sbjct: 57  WNGMLSGYARYGSFRDAKLFFDEMPYKNTVS-----YNTLISAFARQGNLAEARNLFNSM 111

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDV 545
             + ++  W+ L++    +    H    AR +F+  P+ N   +  +   YA  G  ++ 
Sbjct: 112 KIR-DAATWNVLIAGYTQRCLCTH----AREIFDRAPVRNVVTWNTMIGGYAQAGHLDNA 166

Query: 546 ASIRSSMKSKN 556
             +   M   N
Sbjct: 167 TELFGLMPQWN 177


>gi|297841909|ref|XP_002888836.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297334677|gb|EFH65095.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 744

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 247/743 (33%), Positives = 379/743 (51%), Gaps = 93/743 (12%)

Query: 7   LRQAIDTLYSRG-QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFY-EPNTTFLHNR 64
           LR+A+   Y    +  ++ AY  L   C    ++     L  HM  + Y       L N 
Sbjct: 42  LRRALSLFYCAPVELQSQHAYAALFQACADQRNLRDGINLHHHMLSHPYCYSQNVILANY 101

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YAK G + YAR +FD MP R+++SW AL++ +A++G+ QD   LF  M        
Sbjct: 102 LITMYAKCGNILYARQVFDTMPERNVVSWTALITGYAQAGNEQDGFCLFSSM-------- 153

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
              +A      F+  ++         R+EP                    GKQ+HG  + 
Sbjct: 154 ---LAHCCPNEFALSSVLTLC-----RYEP--------------------GKQVHGLALK 185

Query: 185 GNLGGNVFVRNALTDMYAK---GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
             L  +++V NAL  MY +   G    +A  +F+ M  +NLV+WN MI+ +      K+ 
Sbjct: 186 LGLYCSIYVANALISMYGRCHDGTAAYEAWTVFEAMEFKNLVTWNSMIAAFQCCNLGKQA 245

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------- 270
           I +F  M   G+  D  TV NI    +++                               
Sbjct: 246 IGVFMRMHSDGVGFDRATVLNICTTLYKSSDLDPDQVSKCCLQLHSLTVKSGLVTQTEVA 305

Query: 271 -----------GRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                      G   D  +LF  +   +D V WT +I  +     E  A++LF ++  E 
Sbjct: 306 TALVKVYSEILGEFTDCYKLFMEMSHCRDIVAWTGIITAFAVYDPER-AILLFGQLRHEK 364

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           + PD ++ SSV+ +CA L +  H   +H + +  G   D +V+++LI  Y KCG  D   
Sbjct: 365 LSPDWYTFSSVLKACAGLVTARHALSIHAQVIKGGFATDTVVNNSLIHAYAKCGSLDLCK 424

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VF+ M +R+VVSWNS++  Y+ +GQ    L ++ K+   ++KPDS TF+++LSAC HA 
Sbjct: 425 RVFDDMDSRDVVSWNSLLKAYSLHGQVDSILPVFQKM---DIKPDSATFIALLSACSHAG 481

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
             + G   F S+       P L+HYAC+I++LGR+    +A ++IK +P  P++++WSTL
Sbjct: 482 RVKEGLRIFRSMFEKPETLPQLNHYACVIDMLGRAERFAEAEEVIKQMPMGPDAVVWSTL 541

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C   G+ + G++AA  L E+EP N+  YI +SN+Y A   + +       M++  V+
Sbjct: 542 LGSCRKHGNTQLGKLAADKLKEIEPTNSLSYIQMSNIYNAESSFNEGNKSIKEMETWRVR 601

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE- 617
           K    S  EI NKVH+F S  R  P+ E I  EL +LI +L+E G+ P  +  L   +E 
Sbjct: 602 KEPGLSCTEIGNKVHEFTSGGRCRPDREAICRELERLISRLKEMGYVPEMRSALQQIEED 661

Query: 618 EEKVKSICYHSEKLALAYCLIKKPH----GVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           E+K + + +HSEKLALA+ +++       GV  I+IMKNIR+C DCH FMK AS ++G+ 
Sbjct: 662 EQKEEHLSHHSEKLALAFAVMEGRKSGDCGVNLIQIMKNIRICIDCHNFMKLASKLLGKE 721

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I+LRDSNRFHHF   +CSC D W
Sbjct: 722 ILLRDSNRFHHFKDSSCSCNDYW 744


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 241/684 (35%), Positives = 369/684 (53%), Gaps = 49/684 (7%)

Query: 57  NTTFLHNRLLHFYAKSGK---LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  +RLL F   S     L YA  +F+ +   +++ WN +   HA S        L+
Sbjct: 32  NTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLY 91

Query: 114 DKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
             M     + +S ++   +   A    S+E  Q+   + K  +E   Y H S +   +  
Sbjct: 92  VCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLI---SMY 148

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
           +   R K  H K+  G+   +V    AL   YA  G I+ A+ +FD +  +++VSWN +I
Sbjct: 149 VKNGRWKDAH-KVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAII 207

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI----------DDAG-- 277
           SGY   G  K+ +DLF+EM    + PDE T+  ++ AC Q+G I          DD G  
Sbjct: 208 SGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLG 267

Query: 278 -----------------------RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                                   LF  +  KD + W TMI GYT     ++AL+LF EM
Sbjct: 268 SNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEM 327

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCG 372
           L     P+  ++ S++ +CA+L ++  G+ +H      + GV +   + ++LIDMY KCG
Sbjct: 328 LRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCG 387

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             + A  VFN M  R + + N+MI G+A +G+   A  ++ ++ +  ++PD  TFV +LS
Sbjct: 388 DIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLS 447

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC H+ + + G+  F S++  + ITP L+HY CMI+LLG      +A ++I ++  +P+ 
Sbjct: 448 ACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDG 507

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
           +IW +LL  C M G+++ GE  A+ L ++EP N G Y++LSN+YA  GRW +VA+IR+ +
Sbjct: 508 VIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALL 567

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
             K +KK    S IEID+ VH+F+  D+ HP    IY  L ++   L+EAGF P+T  VL
Sbjct: 568 NDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVL 627

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            + +EE K  ++ +HSEKLA+A+ LI    G T + I+KN+RVC +CH   K  S I  R
Sbjct: 628 QEMEEEFKQGALRHHSEKLAIAFGLISTKPG-TKLTIVKNLRVCRNCHEATKLISKIYKR 686

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            II RD  RFHHF  G CSC D W
Sbjct: 687 EIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 138/287 (48%), Gaps = 36/287 (12%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S +L  C  +   D    A  +F  I+E + + W TM  G+  +  
Sbjct: 24  QMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 83

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              A+ L+  M+S  + P+ ++   ++ SCAKL     GQ +HG  + LG + DL V ++
Sbjct: 84  PVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTS 143

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM---------------------------- 395
           LI MY K G   DA  VF+    R+VVS+ ++                            
Sbjct: 144 LISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSW 203

Query: 396 ---INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
              I+GYA  G + EAL L+ ++++ N+KPD  T V+V+SAC  +   + G+     I  
Sbjct: 204 NAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDD 263

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            HG+  +L     +I+L  +  +V+ A  L + L +K + + W+T++
Sbjct: 264 -HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNK-DVISWNTMI 308



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 114/245 (46%), Gaps = 33/245 (13%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD----AWTVFNM 383
           S++ +C  L SL   +++H + +  G+ +     S L++ +C      D    A +VF  
Sbjct: 7   SLLHNCKTLQSL---RIIHAQMIKTGLHNTNYALSRLLE-FCILSPNFDGLPYAISVFET 62

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +   N++ WN+M  G+A +   + A+ LY  ++   L P+S+TF  +L +C    + + G
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEG 122

Query: 444 QNHFDSISAVHG----ITPSLDHY--ACMINLL---GRSSDVDKAVDLIKSLPHKPNSLI 494
           Q        +HG    +   LD Y    +I++    GR  D  K  D      H+ + + 
Sbjct: 123 QQ-------IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFD---GSSHR-DVVS 171

Query: 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           ++ L++  A +G I+    +A+ +F+  P+ +   +  + + YA  G  ++   +   M 
Sbjct: 172 YTALITGYASRGYIE----SAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM 227

Query: 554 SKNVK 558
             NVK
Sbjct: 228 KTNVK 232


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/586 (35%), Positives = 334/586 (56%), Gaps = 38/586 (6%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALT 198
            L     +Q+    P    +   L  C +L  + +G+ +H  +V  + L  ++ ++N + 
Sbjct: 71  GLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIV 130

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +MYAK G +D AR +FD M  +++V+W  +I+G+ +N +P+  + LF +M  LG  P+  
Sbjct: 131 NMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHF 190

Query: 259 TVSNILGAC--------------------FQT---------------GRIDDAGRLFHVI 283
           T+S++L A                     +Q+               G +D A   F  +
Sbjct: 191 TLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGM 250

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
             K  V W  +I G+ + G+ E AL L  +M  ++ +P  F+ SSV+S+CA + +L  G+
Sbjct: 251 PTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGK 310

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            VH   +  G+     + + L+DMY K G  DDA  VF+ +   +VVSWN+M+ G AQ+G
Sbjct: 311 WVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHG 370

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
              E L  ++++L+  ++P+  +F+ VL+AC H+ L + G  +F+ +   + + P + HY
Sbjct: 371 LGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHY 429

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
              ++LLGR   +D+A   I+ +P +P + +W  LL  C M  +++ G  AA   FEL+P
Sbjct: 430 VTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDP 489

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
            ++GP ++LSN+YA+ GRW DVA +R  MK   VKK  A SW+EI+N VH FV+ D THP
Sbjct: 490 HDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHP 549

Query: 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHG 643
             + I  +  ++  K++E G+ P+T  VL    ++E+ + + YHSEKLALA+ L+  P G
Sbjct: 550 RIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTG 609

Query: 644 VTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
            +PIRI KNIRVCGDCH  +KF S ++ R II+RD+NRFH F  G+
Sbjct: 610 -SPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/409 (26%), Positives = 182/409 (44%), Gaps = 67/409 (16%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y++L+ +CTR+  VE  + + +H+  + +  N   L N +++ YAK G L  AR +FD+M
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P +D+++W AL                               IAGF+     R+AL +F 
Sbjct: 150 PTKDMVTWTAL-------------------------------IAGFSQNNRPRDALLLFP 178

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           +M +  F+P  +T  S L A      L  G Q+H   +      +V+V +AL DMYA+ G
Sbjct: 179 QMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCG 238

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A+  FD M  ++ VSWN +ISG+ + G+ +  + L  +MQ     P   T S++L 
Sbjct: 239 HMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLS 298

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    + G IDDA R+F  + + D V 
Sbjct: 299 ACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W TM+ G  Q+G  ++ L  F +ML   + P++ S   V+++C+    L  G        
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK 418

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMING 398
              V+ D+      +D+  + G+ D A      MP     + W +++  
Sbjct: 419 KYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGA 467



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 154/303 (50%), Gaps = 14/303 (4%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL+  +AR G +   +  FD MP +  VS+N  I+G A KG    AL +  +MQ+  F+
Sbjct: 228 SALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQ 287

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           PT +T+ S L+ACA +  L +GK +H  ++   L    F+ N L DMYAK G ID A+ +
Sbjct: 288 PTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRV 347

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FDR+   ++VSWN M++G  ++G  K+ +D F++M  +G+ P+E++   +L AC  +G +
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLL 407

Query: 274 DDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
           D+    F ++K    E D   + T +    + G  + A     EM    + P      ++
Sbjct: 408 DEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREM---PIEPTAAVWGAL 464

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           + +C    ++  G     +A  L   D    +L+S    ++Y   G   D   V  MM  
Sbjct: 465 LGACRMHKNMELGVYAAERAFELDPHDSGPRMLLS----NIYASAGRWRDVAKVRKMMKE 520

Query: 387 RNV 389
             V
Sbjct: 521 SGV 523



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 82/162 (50%), Gaps = 7/162 (4%)

Query: 22  TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           T   Y+ ++  C  +  +E  K + +HM  +  +    F+ N LL  YAK+G +  A+ +
Sbjct: 289 THFTYSSVLSACASIGALEQGKWVHAHMIKSGLKL-IAFIGNTLLDMYAKAGSIDDAKRV 347

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-----DSVSYNTAIAGFANKGF 136
           FD++   D++SWN +L+  A+ G  ++    F++M +R     + +S+   +   ++ G 
Sbjct: 348 FDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQM-LRIGIEPNEISFLCVLTACSHSGL 406

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
             E L  F  M+K + EP    +V+ ++   ++  L R ++ 
Sbjct: 407 LDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERF 448


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 239/707 (33%), Positives = 368/707 (52%), Gaps = 103/707 (14%)

Query: 57  NTTFLHNRLLHFYAKSGK---LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  ++L+ F   S     L YA  +FD +   +++ WN +   HA S          
Sbjct: 32  NTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSS--------- 82

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
                 D VS                AL ++  M      P  YT    L ACA+    R
Sbjct: 83  ------DPVS----------------ALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFR 120

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS--------- 224
            G+QIHG ++      +++V  +L  MY K G  + AR +FD+ ++R++VS         
Sbjct: 121 EGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYA 180

Query: 225 ----------------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                                 WN +ISGY + G  K+ ++LF+EM    + PDE T+  
Sbjct: 181 SNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVT 240

Query: 263 ILGACFQT-----------------------------------GRIDDAGRLFHVIKEKD 287
           +L AC Q+                                   G ++ A  LF  +  KD
Sbjct: 241 VLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKD 300

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W T+I GYT     ++AL+LF EML     P++ ++ S++ +CA L ++  G+ +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHV 360

Query: 348 --KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
                + GV +   + ++LIDMY KCG  + A  VF+ M  R++ SWN+MI G+A +G+ 
Sbjct: 361 YIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRA 420

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             A  ++ ++ ++ ++PD  TFV +LSAC H+ + + G++ F S++  + ITP L+HY C
Sbjct: 421 NPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGC 480

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLG S    +A ++I S+   P+ +IW +LL  C M G+++ GE  A++L ++EP N
Sbjct: 481 MIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKN 540

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           +G Y++LSN+YA  GRW +VA  R+ +  K +KK    S IEID+ VH+F+  D+ HP  
Sbjct: 541 SGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRN 600

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    G T
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG-T 659

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
            + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC
Sbjct: 660 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 213/440 (48%), Gaps = 62/440 (14%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHF 68
           + S G       +  L+  C +       +++  H+     DL+ Y      +H  L+  
Sbjct: 94  MISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLY------VHTSLIAM 147

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y K+G+   AR +FD+   RD++S+ AL+  +A +G +   + +FD++P++D VS+N  I
Sbjct: 148 YVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALI 207

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G+A  G  +EAL++F  M K   +P + T V+ L+ACAQ   +  G+Q+H  I     G
Sbjct: 208 SGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFG 267

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+ + NAL D+Y K GE++ A  LF+ ++ ++++SWN +I GY      K+ + LFQEM
Sbjct: 268 SNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEM 327

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK---------------------- 286
              G +P+EVT+ +IL AC   G I D GR  HV  +K                      
Sbjct: 328 LRSGESPNEVTMLSILPACAHLGAI-DIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKC 386

Query: 287 ----------DNV------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                     D++       W  MI G+  +G+   A  +F+ M  + + PD  +   ++
Sbjct: 387 GDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLL 446

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL------IDMYCKCGVTDDAWTVFNMM 384
           S+C+     + G +  G+ +   + +D  ++  L      ID+    G+  +A  + N M
Sbjct: 447 SACS-----HSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSM 501

Query: 385 PT-RNVVSWNSMINGYAQNG 403
               + V W S++     +G
Sbjct: 502 EMDPDGVIWCSLLKACKMHG 521



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 36/272 (13%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD---AWTVFNMM 384
           S++ +C  L SL   +++H K +  G+ +     S LI+        D    A +VF+ +
Sbjct: 7   SLLHNCKTLQSL---RIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
              N++ WN+M  G+A +   + AL LY  ++   L P+S+TF  +L AC  +  F  GQ
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 445 NHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
                   +HG    +   LD Y    +I +  ++   + A  +     H+ + + ++ L
Sbjct: 124 Q-------IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHR-DVVSYTAL 175

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           +   A  G I     +A+ +F+  P+ +   +  L + YA  G +++   +   M   NV
Sbjct: 176 IKGYASNGYIX----SAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNV 231

Query: 558 KK-----------FAAYSWIEIDNKVHKFVSE 578
           K             A  + IE+  +VH ++ +
Sbjct: 232 KPDESTMVTVLSACAQSASIELGRQVHSWIDD 263


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/558 (36%), Positives = 320/558 (57%), Gaps = 37/558 (6%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           + R  + HG +     GG +FV N+L  MYAK G +D A  +FD M  RN+V+W  +++ 
Sbjct: 86  IHRHVEAHGPLPHDGAGG-LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAA 144

Query: 232 YLK-NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------------- 267
               +G+ ++ +     M+  G+ P+  T S++LGAC                       
Sbjct: 145 LASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVF 204

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                     + G +D   R+F  +  +D V W ++I G+ Q+G    A+ LF  M    
Sbjct: 205 VRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAG 264

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
              ++ +++SV+ +C  +  L  G+ VH  A VL  D DL++ +AL+DMYCKCG  +DA 
Sbjct: 265 FSSNQGTLTSVLRACTGMVMLEAGRQVH--AHVLKYDRDLILHNALLDMYCKCGSLEDAD 322

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +F+ MP R+V+SW++M++G AQNG+ +EAL ++D +  + + P+  T V VL AC HA 
Sbjct: 323 ALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAG 382

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L E G ++F S+  + GI P  +H+ CM++LLGR+  +D+AV+ I  +  +P+S+IW TL
Sbjct: 383 LVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTL 442

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C M  +      AAR + +LEP + G  ++LSN YA   +W D      +M+ + ++
Sbjct: 443 LGACRMHKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMR 502

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K    SWIE++ +VH F++ D +HP ++ I +EL++LI +++  G+ P T+ VL D   E
Sbjct: 503 KEPGRSWIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTE 562

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
           +K   + YHSEK+A+ +  +    G  PIRIMKN+R+CGDCH F K  S   GR I++RD
Sbjct: 563 QKEDLLKYHSEKMAIVFGTMHAVDG-KPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRD 621

Query: 679 SNRFHHFVGGNCSCKDNW 696
             RFHHF  G CSC D W
Sbjct: 622 PVRFHHFQDGACSCGDYW 639



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 177/382 (46%), Gaps = 84/382 (21%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK-GFSREALQVFSRMQKDRF 152
           N+L S +A+ G + D   +FD MP+R+ V++ T +A  A+  G  +EAL+    M++D  
Sbjct: 108 NSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGV 167

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P  YT  S L AC     L     +H   V   L  +VFVR++L D Y K G++D  R 
Sbjct: 168 APNAYTFSSVLGACTTPGML---TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRR 224

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +FD M  R+LV WN +I+G+ ++G     I+LF  M+  G + ++ T++++L AC     
Sbjct: 225 VFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVM 284

Query: 268 FQTGR----------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYT 299
            + GR                            ++DA  LFH + ++D + W+TM+ G  
Sbjct: 285 LEAGRQVHAHVLKYDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLA 344

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           QNGK  +AL +F+ M S+ V P+  ++  V+ +C+                         
Sbjct: 345 QNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACS------------------------- 379

Query: 360 VSSALIDMYCKCGVTDDAW-------TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
                       G+ +D W        +F + P R     N M++   + G+  EA+   
Sbjct: 380 ----------HAGLVEDGWHYFRSMKRLFGIQPERE--HHNCMVDLLGRAGKLDEAVEFI 427

Query: 413 DKLLQENLKPDSFTFVSVLSAC 434
             +   +L+PDS  + ++L AC
Sbjct: 428 HGM---SLEPDSVIWRTLLGAC 446



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/252 (30%), Positives = 135/252 (53%), Gaps = 14/252 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   ++L+ A+ + G +   R +FD+M  RD V +N+ IAGFA  G    A+++F RM+
Sbjct: 202 DVFVRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMK 261

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F     T  S L AC  ++ L  G+Q+H  ++      ++ + NAL DMY K G ++
Sbjct: 262 DAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVL--KYDRDLILHNALLDMYCKCGSLE 319

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  LF RM  R+++SW+ M+SG  +NG+  + + +F  M+  G+ P+ VT+  +L AC 
Sbjct: 320 DADALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACS 379

Query: 269 QTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
             G ++D         RLF +  E+++      ++G  + GK ++A+   + M  E   P
Sbjct: 380 HAGLVEDGWHYFRSMKRLFGIQPEREHHNCMVDLLG--RAGKLDEAVEFIHGMSLE---P 434

Query: 322 DKFSISSVVSSC 333
           D     +++ +C
Sbjct: 435 DSVIWRTLLGAC 446



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 122/279 (43%), Gaps = 47/279 (16%)

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV-----DDDLLVSSALIDMYCKCGVT 374
           R D  S++ +V  C +  +  HG+++H      G         L VS++L  MY K G+ 
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLL 120

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQ-NGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
           DDA  +F+ MP RNVV+W +++   A  +G+  EAL     + ++ + P+++TF SVL A
Sbjct: 121 DDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGA 180

Query: 434 C-----------------LHADLFER---------------GQNHFDSISAVHGITPSLD 461
           C                 L +D+F R               G+  FD +     +T  L 
Sbjct: 181 CTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM-----VTRDLV 235

Query: 462 HYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            +  +I    +S D   A++L   +K      N    +++L  C     ++ G     H+
Sbjct: 236 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHV 295

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            + +  +   +  L +MY  CG  ED  ++   M  ++V
Sbjct: 296 LKYDR-DLILHNALLDMYCKCGSLEDADALFHRMPQRDV 333


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/675 (33%), Positives = 359/675 (53%), Gaps = 75/675 (11%)

Query: 63   NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
            N L+  Y K  +   A  +FD MP R+++SW+AL+S H  +G   DL+            
Sbjct: 416  NYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG---DLKG----------- 461

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                             +L +FS M +    P ++T  + L AC  L  L +G QIHG  
Sbjct: 462  -----------------SLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC 504

Query: 183  VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +       V V N+L DMY+K G I++A  +F R+ +R+L+SWN MI+G++  G   K +
Sbjct: 505  LKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKAL 564

Query: 243  DLFQEMQLLGLN--PDEVTVSNILGACFQTGRID-------------------------- 274
            D F  MQ   +   PDE T++++L AC  TG I                           
Sbjct: 565  DTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSL 624

Query: 275  -----------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                        A + F  IKEK  + W+++I+GY Q G+  +A+ LF  +   + + D 
Sbjct: 625  VDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS 684

Query: 324  FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            F++SS++   A  A L  G+ +   AV L    +  V ++++DMY KCG+ D+A   F  
Sbjct: 685  FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAE 744

Query: 384  MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            M  ++V+SW  +I GY ++G   +++ ++ ++L+ N++PD   +++VLSAC H+ + + G
Sbjct: 745  MQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEG 804

Query: 444  QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            +  F  +   HGI P ++HYAC+++LLGR+  + +A  LI ++P KPN  IW TLLS+C 
Sbjct: 805  EELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCR 864

Query: 504  MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
            + GDI+ G+   + L  ++  N   Y+M+SN+Y   G W +  + R     K +KK A  
Sbjct: 865  VHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGM 924

Query: 564  SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVK 622
            SW+EI+ +VH F S + +HP T +I E L +  ++L +E G+    K  LHD  +E K +
Sbjct: 925  SWVEIEREVHFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEE 984

Query: 623  SICYHSEKLALAYCLIK---KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
            ++  HSEKLA+   L        G T IR+ KN+RVC DCH F+K  S I     ++RD+
Sbjct: 985  NLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDA 1043

Query: 680  NRFHHFVGGNCSCKD 694
             RFH F  G CSC D
Sbjct: 1044 VRFHSFEDGCCSCGD 1058



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 50/353 (14%)

Query: 9   QAIDTLYSRGQAATEE-----AYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLH 62
           +A+DT     +A  +E       T L+  C+    +   K++   +    F+ P++  + 
Sbjct: 562 KALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATIT 621

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
             L+  Y K G LF AR  FD++  + +ISW++L+  +A+ G                  
Sbjct: 622 GSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV--------------- 666

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                           EA+ +F R+Q+   +   +   S +   A    LR+GKQ+    
Sbjct: 667 ----------------EAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALA 710

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V    G    V N++ DMY K G +D+A   F  M  ++++SW ++I+GY K+G  KK +
Sbjct: 711 VKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSV 770

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVG 297
            +F EM    + PDEV    +L AC  +G I +   LF  + E   +      +  ++  
Sbjct: 771 RIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDL 830

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
             + G+ ++A  L + M    ++P+     +++S C       HG +  GK V
Sbjct: 831 LGRAGRLKEAKHLIDTM---PIKPNVGIWQTLLSLCR-----VHGDIELGKEV 875


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/574 (38%), Positives = 324/574 (56%), Gaps = 41/574 (7%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK--GGEIDKARWLFDRM 217
           V+A+  C ++ DL   K I   +V  NL  + F+ + L +  A    G +  A  +F   
Sbjct: 11  VAAIKRCTRVGDL---KAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCT 67

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------- 267
           ++ NL  WN +I GY  +  P   I L+++M L G++P+  T   +L AC          
Sbjct: 68  HHPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQ 127

Query: 268 ------------FQT-------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                       F+T             G +D A  +F  + E D+  W+TM+ GY QNG
Sbjct: 128 ELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNG 187

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           +  +AL LF EM +E+V  D F+++SVV  C  L +L  G+ VH      GV  D+++ +
Sbjct: 188 QAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGT 247

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+ MY KCG  D+A  VF  M  R+V +W++MI GYA +G   +AL L+D + +    P
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIP 307

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  TF SVLSAC H+ L E+G   F+++   + ITP + HY CM++L  R+  V  A   
Sbjct: 308 NCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKF 367

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+++P +PN ++W TLL  C   G    GE  +R + +L+P +   Y+++SN+YA+ GRW
Sbjct: 368 IQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRW 427

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
             V  +RS MK K  KK   +S IEI+  VHKF+  D +HPE E IY  L ++ +KL++ 
Sbjct: 428 SSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQV 487

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G   +T  VLHD  EEEK  ++  HSE+LA+AY L+  P+G +PIRI+KN+RVC DCH  
Sbjct: 488 GHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNG-SPIRIVKNLRVCRDCHEV 546

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  S++  R II+RD  RFHHF    CSC D W
Sbjct: 547 IKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 194/443 (43%), Gaps = 75/443 (16%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK--SGKLFYARDLFDKMPLRDI 90
           CTRV D+   K +Q+HM +       TFL ++L+   A   SG + YA  +F      ++
Sbjct: 17  CTRVGDL---KAIQAHM-VRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNL 72

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
             WN ++  ++ S S           PI       TAIA             ++  M   
Sbjct: 73  FMWNTIIRGYSISDS-----------PI-------TAIA-------------LYRDMFLC 101

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
              P  YT    L AC +LL L  G+++H +IV   L     + N L  +YA  G +D A
Sbjct: 102 GISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYA 161

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
             +FD M   +  SW+ M+SGY +NGQ  + + LF+EMQ   ++ D  T+++++G C   
Sbjct: 162 CVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDL 221

Query: 268 --------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G +D+A ++F  + E+D   W+TMI
Sbjct: 222 GALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMI 281

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGV 354
            GY  +G  E AL LF+ M      P+  + +SV+S+C+    +  G Q+         +
Sbjct: 282 AGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKI 341

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYD 413
              +     ++D++C+ G+   A      MP   NVV W +++     +G       +  
Sbjct: 342 TPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISR 401

Query: 414 KLLQ-ENLKPDSFTFVSVLSACL 435
           K+L+ +   P+++  VS + A L
Sbjct: 402 KILKLDPSSPENYVLVSNVYASL 424



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++   AL+  +++ GS+ +   +F  M  RD  +++T IAG+A  G   +ALQ+F  M+
Sbjct: 242 DVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMK 301

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGGEI 207
           + +  P   T  S L+AC+    + +G QI   +     +   +     + D++ + G +
Sbjct: 302 RSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMV 361

Query: 208 DKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE----VTV 260
             A      M    N+V W  ++     +G      DL + +  ++L L+P      V V
Sbjct: 362 GHAHKFIQTMPIEPNVVLWRTLLGACKTHGYK----DLGEHISRKILKLDPSSPENYVLV 417

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEK 286
           SN+  +    GR     ++  ++K+K
Sbjct: 418 SNVYAS---LGRWSSVCQVRSLMKDK 440


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 326/586 (55%), Gaps = 38/586 (6%)

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           R+++D  +   +T    L  CA+   L  GK  HG  +   L  +    N L ++Y K G
Sbjct: 48  RVERDLIDV--FTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCG 105

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           + D AR +FD M+ R+++SWN MI+GY  N +  + + LF  M   G    E T+S+ L 
Sbjct: 106 QNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLC 165

Query: 266 ACF-----------------------------------QTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    +   I DA  +F  + EK +V 
Sbjct: 166 ACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVT 225

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W+++  G+ QNG  E+ L LF     E ++  +F++SS++S+CA LA +  G  VH   V
Sbjct: 226 WSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIV 285

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G   +L V+++L+D+Y KCG  + ++ VF  M  +NVV WN+MI  ++++    EA+ 
Sbjct: 286 KHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMI 345

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L++K+ Q  + P+  T++S+LSAC H  L E G+++F+ + +     P++ HY+CM+++L
Sbjct: 346 LFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVL 405

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GRS   D+A  L+  +P +P + +W +LL    +  +I+   +AA  LF LEP N G ++
Sbjct: 406 GRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHV 465

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           +LSN+YAA G WE+V   R  ++    KK    SWIE   K+H FV+ +R HP    +Y 
Sbjct: 466 LLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYN 525

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           +L ++  ++++     NT+  LHD   ++K + + +HSEKLA A+ LI  P  + PI I 
Sbjct: 526 KLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNI-PITIY 584

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R+CGDCH FMK  S I  R +I+RD NRFHHF  G+CSC D W
Sbjct: 585 KNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 174/347 (50%), Gaps = 41/347 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D ++ N L++ + + G     R +FD M +R  +S+NT IAG+ +     EAL++FSRM 
Sbjct: 90  DTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMH 149

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  + T++T  S L ACA    +   KQ+H   +   L  + FV  A  D+YAK   I 
Sbjct: 150 REGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIK 209

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A W+F+ M  +  V+W+ + +G+++NG  ++ + LFQ  Q  G+   E TVS+IL  C 
Sbjct: 210 DACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCA 269

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G+I+ +  +F  ++EK+ V W  
Sbjct: 270 SLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNA 329

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  ++++    +A+ILF +M    + P++ +  S++S+C+    +  G+  H   ++L 
Sbjct: 330 MIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGR--HYFNLLLS 387

Query: 354 ---VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMI 396
               + ++L  S ++D+  + G TD+AW + + MP     S W S++
Sbjct: 388 DRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLL 434



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 10/186 (5%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R++    +L+  +A+ G ++    +F  M  ++ V +N  IA F+    S EA+ +F +M
Sbjct: 291 RNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKM 350

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGE 206
           Q+    P + T++S L+AC+    +  G+     ++       NV   + + D+  + G+
Sbjct: 351 QQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGK 410

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL--FQEMQLLGLNPD----EVTV 260
            D+A  L D+M      S   M    L + +  K I L      QL  L P+     V +
Sbjct: 411 TDEAWKLLDKMPFEPTAS---MWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLL 467

Query: 261 SNILGA 266
           SN+  A
Sbjct: 468 SNVYAA 473


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 329/592 (55%), Gaps = 59/592 (9%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           LN C      R G+++H  ++      +VF+R  L  +Y K   +  A  +FD M  RN+
Sbjct: 250 LNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNV 309

Query: 223 VSWNLMISGYLKNGQPKKCIDLF---QEMQLLGL------------------NPDEVTVS 261
           VSW  MIS Y + G   + ++LF    ++ L G+                   P+E T +
Sbjct: 310 VSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFA 369

Query: 262 NILGACFQT-----------------------------------GRIDDAGRLFHVIKEK 286
            +L +C  +                                   G+I +A  +F  + E+
Sbjct: 370 TVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPER 429

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
           D V  T +I GY Q G +E+AL LF  +  E ++ +  + + V+++ + LA+L  G+ VH
Sbjct: 430 DVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVH 489

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL 406
              +   +   +++ ++LIDMY KCG    +  +F+ M  R V+SWN+M+ GY+++G+  
Sbjct: 490 NHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGR 549

Query: 407 EALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH-GITPSLDHYA 464
           E L L+  + +E  +KPDS T ++VLS C H  L ++G N F+ +S+    + P ++HY 
Sbjct: 550 EVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYG 609

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           C+++LLGRS  V++A + IK +P +P + IW +LL  C +  ++  GE A + L E+EP 
Sbjct: 610 CVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPG 669

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           NAG Y++LSN+YA+ GRWEDV+S+R  M  K V K    S IE+D  +H F + DR+HP 
Sbjct: 670 NAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPR 729

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
            E I  ++ +L    +E G+ P+   VLHD  EE+K K +  HSEKLAL++ LI  P  V
Sbjct: 730 REEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASV 789

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            PIR++KN+R+C DCH F K+ S + GR + LRD NRFH  VGG CSC+D W
Sbjct: 790 -PIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 204/436 (46%), Gaps = 60/436 (13%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLL 66
           L+Q +  +   G     E Y  ++ +C         +R+ +HM    Y P + FL  RL+
Sbjct: 227 LQQPLLQMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLP-SVFLRTRLI 285

Query: 67  HFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG-SVQDLRALFDKMPIRDSVSYN 125
             Y K   L  A ++FD+MP R+++SW A++SA+++ G + Q L   F  + I  +  Y 
Sbjct: 286 VLYTKCDSLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVY- 344

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
            AI        +R  +           EP ++T  + L +C   L    G+QIH  I+  
Sbjct: 345 -AIDKLKLSNPNRPWVCT---------EPNEFTFATVLTSCTSSLGFILGRQIHSLIIKL 394

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   +VFV ++L DMYAK G+I +AR +F+ +  R++VS   +ISGY + G  ++ ++LF
Sbjct: 395 NYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELF 454

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           + +Q  G+  + VT + +L A                                     + 
Sbjct: 455 RRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKC 514

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSV 329
           G +  + R+F  + E+  + W  M+VGY+++G+  + L LF  M  E  V+PD  +I +V
Sbjct: 515 GNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAV 574

Query: 330 VSSCA------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +S C+      K  ++++  +  GK   + V+  +     ++D+  + G  ++A+     
Sbjct: 575 LSGCSHGGLEDKGLNIFN-DMSSGK---IEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKK 630

Query: 384 MPTRNVVS-WNSMING 398
           MP     + W S++  
Sbjct: 631 MPFEPTAAIWGSLLGA 646



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 34/190 (17%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           +++++ C    +   GQ VH   +       + + + LI +Y KC    DA  VF+ MP 
Sbjct: 247 NAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPE 306

Query: 387 RNVVSWNSMINGYAQNGQDLEALALY--------------DKLLQEN-------LKPDSF 425
           RNVVSW +MI+ Y+Q G   +AL L+              DKL   N        +P+ F
Sbjct: 307 RNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEF 366

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSL---DHY---ACMINLLGRSSDVDKA 479
           TF +VL++C  +  F  G+        +H +   L   DH    + ++++  +   + +A
Sbjct: 367 TFATVLTSCTSSLGFILGRQ-------IHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEA 419

Query: 480 VDLIKSLPHK 489
             + + LP +
Sbjct: 420 RTVFECLPER 429


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/644 (35%), Positives = 348/644 (54%), Gaps = 37/644 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ + N L++ ++ +G  +D   +F  M  +D +S+N+ +A +A  G   +AL++ + M 
Sbjct: 266 NVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATMF 325

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
             R      T  SAL AC+       GK +H  ++   L  NV V NAL  +YAK G + 
Sbjct: 326 YMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMI 385

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           +A+ +F  M  R+ V+WN +I G+  + +P + +  F+ M+  G+  + +T+SN+LGAC 
Sbjct: 386 EAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACL 445

Query: 269 QTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQ----------------------- 300
               + + G   H        + D     ++I  Y +                       
Sbjct: 446 APNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWN 505

Query: 301 --------NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
                   +G  E+AL    EM    V  D+FS S  +++ AKLA L  GQ +HG AV L
Sbjct: 506 AMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKL 565

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G D +  V+SA +DMY KCG  DD   +      R+ +SWN + + ++++G   +A   +
Sbjct: 566 GCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETF 625

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            +++   +KPD  TFVS+LSAC H  + E G  ++DS+    GI   + H  C+I+LLGR
Sbjct: 626 HEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGR 685

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S    +A   IK +P  P   +W +LL+ C   G+++ G  A  +L +L+P +   Y++ 
Sbjct: 686 SGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLY 745

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+ A  G+WEDV  IR  M    +KK  A SW+++ NK+  F   D +HP+   IY +L
Sbjct: 746 SNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKL 805

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L K ++EAG+ P+    L DT EE+K  ++  HSE+LALAY LI  P G T ++I KN
Sbjct: 806 EELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGST-LKIFKN 864

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVCGDCH   KFAS I+GR I+LRD  RFH F GG CSC D W
Sbjct: 865 LRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/393 (25%), Positives = 185/393 (47%), Gaps = 36/393 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D+    +L+  +   G   D   +F +M  ++ VS+   +  + + G     + ++ R
Sbjct: 62  LSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRR 121

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+ +     D T  S ++ C  L +   G Q+ G ++   L  NV V N+L  M+   G 
Sbjct: 122 MRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGS 181

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +++A ++F  M+  + +SWN MI+ Y++NG  K+ +  F  M  +    +  T+S +L  
Sbjct: 182 VEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAG 241

Query: 267 CFQT-----------------------------------GRIDDAGRLFHVIKEKDNVCW 291
           C                                      GR +DA  +F  + EKD + W
Sbjct: 242 CGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISW 301

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
            +M+  Y Q+G   DAL L   M       +  + +S +++C+       G+++H   + 
Sbjct: 302 NSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIH 361

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
           +G+ ++++V +AL+ +Y K G+  +A  VF  MP R+ V+WN++I G+A + +  EAL  
Sbjct: 362 VGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKA 421

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHA-DLFERG 443
           +  + +E +  +  T  +VL ACL   DL E G
Sbjct: 422 FKLMREEGVPINYITISNVLGACLAPNDLLEHG 454



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 213/449 (47%), Gaps = 42/449 (9%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL-LDLRRGKQIHGKIVVGN 186
           ++GF   G  RE+++ F+ M+    +P+     S + AC +    L  G Q+HG IV   
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           L  +VFV  +L  +Y   G    A  +F  M  +N+VSW  ++  Y+  G+P   +++++
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120

Query: 247 EMQLLGLNPDEVTVSNILGAC---------FQT--------------------------G 271
            M+  G++ ++ T+S+++  C         +Q                           G
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFG 180

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            +++A  +F  + E D + W +MI  Y +NG  +++L  F+ M       +  ++S++++
Sbjct: 181 SVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLA 240

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
            C  + +L  G+ +H   +  G + ++  S+ LI MY   G  +DA  VF  M  ++++S
Sbjct: 241 GCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMIS 300

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WNSM+  YAQ+G  L+AL L   +       +  TF S L+AC   +    G+     + 
Sbjct: 301 WNSMMACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVI 360

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
            V G+  ++     ++ L  +S  + +A  + +++P K + + W+ L+   A   +    
Sbjct: 361 HV-GLHENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALIGGHADSEEPDEA 418

Query: 512 EMAARHLFELE-PINAGPYIMLSNMYAAC 539
             A + + E   PIN   YI +SN+  AC
Sbjct: 419 LKAFKLMREEGVPIN---YITISNVLGAC 444



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 120/246 (48%), Gaps = 7/246 (2%)

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA-SLYHGQVVHGKAVVLGVD 355
           G+ + G   +++  FNEM    V+P   +++S+V++C +    L  G  VHG  V +G+ 
Sbjct: 3   GFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLL 62

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V ++L+ +Y   G+  DA  VF  M  +NVVSW +++  Y   G+    + +Y ++
Sbjct: 63  SDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRM 122

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
             E +  +  T  SV+S C+  +    G      +   +G+  ++     +I++ G    
Sbjct: 123 RSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGYFGS 181

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL-EPINAGPYIMLSN 534
           V++A  +   +  + +++ W+++++     G  K        +F + + IN+     LS 
Sbjct: 182 VEEACYVFSGMD-EHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINS---TTLST 237

Query: 535 MYAACG 540
           M A CG
Sbjct: 238 MLAGCG 243


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/663 (33%), Positives = 367/663 (55%), Gaps = 36/663 (5%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           YAK GK  +A  L       ++   NAL++ + R G +     +  +M   D V++N+ I
Sbjct: 299 YAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLI 358

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
            G+      +EAL+ FS M     +  + +  S + A  +L +L  G ++H  ++     
Sbjct: 359 KGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+ V N L DMY+K          F RM++++L+SW  +I+GY +N    + ++LF+++
Sbjct: 419 SNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDV 478

Query: 249 QLLGLNPDEVTVSNILGAC----------------FQTGRIDD----------------- 275
               +  DE+ + +IL A                  + G +D                  
Sbjct: 479 AKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMG 538

Query: 276 -AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A R+F  IK KD V WT+MI     NG E +A+ LF  M+   +  D  ++  ++S+ A
Sbjct: 539 YATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAA 598

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            L++L  G+ +H   +  G   +  ++ A++DMY  CG    A  VF+ +  + ++ + S
Sbjct: 599 SLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTS 658

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MIN Y  +G    A+ L+DK+  EN+ PD  +F+++L AC HA L + G+     +   +
Sbjct: 659 MINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEY 718

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            + P  +HY C++++LGR++ V +A + +K +  +P + +W  LL+ C    + + GE+A
Sbjct: 719 ELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIA 778

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A+ L ELEP N G  +++SN++A  GRW DV  +R+ MK+  ++K    SWIE+D KVHK
Sbjct: 779 AQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHK 838

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           F + D++HPE++ IYE+LS++ +KL+ E G+  +TK VLH+  E EKV+ +  HSE++A+
Sbjct: 839 FTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAI 898

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           AY L++ P     +RI KN+RVC DCH F K  S +  R I++RD+NRFHHF  G CSC 
Sbjct: 899 AYGLLRTPDRAC-LRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCG 957

Query: 694 DNW 696
           D+W
Sbjct: 958 DSW 960



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 223/460 (48%), Gaps = 62/460 (13%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + GS+ D   +FD+MP R + ++NT I  + + G    AL ++  M+ +     
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 181

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             +  + L ACA+L D+R G ++H  +V        F+ NAL  MYAK  ++  AR LFD
Sbjct: 182 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 241

Query: 216 RMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------- 267
               + + V WN ++S Y  +G+  + ++LF+EM + G  P+  T+ + L AC       
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAK 301

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G++  A R+   +   D V W ++I GY
Sbjct: 302 LGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGY 361

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   ++AL  F++M++   + D+ S++S++++  +L++L  G  +H   +  G D +L
Sbjct: 362 VQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNL 421

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V + LIDMY KC +T      F  M  ++++SW ++I GYAQN   +EAL L+  + ++
Sbjct: 422 QVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKK 481

Query: 419 NLKPDSFTFVSVLSAC-----------LHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
            ++ D     S+L A            +H  +  +G    D++               ++
Sbjct: 482 RMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL--LDTVIQNE-----------LV 528

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           ++ G+  ++  A  + +S+  K + + W++++S  A+ G+
Sbjct: 529 DVYGKCRNMGYATRVFESIKGK-DVVSWTSMISSSALNGN 567


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/569 (36%), Positives = 320/569 (56%), Gaps = 36/569 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  CA+   L  GK  HG  +   L  +    N L ++Y K G  D AR +FD M+ R++
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSWN MI+GY  +G+  + + LF  M   G +  E T+S+ + AC               
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                +   I DA  +F  + E+  V W+++  GY QNG  E+A
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF     E V   +F++S+++S+CA LA    G  +H   +  G   +  V+++L+D+
Sbjct: 244 LHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDV 303

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y +CG  + A+ +F  M  +NVV WN+MI  ++++    EA+ L++K+ Q  + P+  T+
Sbjct: 304 YARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTY 363

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           +SVLS C HA L E+G+++F  + +   + P++ HY+CM+++LGRS   D+A +L+  +P
Sbjct: 364 LSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMP 423

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +P + +W +LL  C    +I+   +AA  LF+LEP N G +++LSN+YAA G WE+V  
Sbjct: 424 FEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLM 483

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            R  +K    KK    SWIE   KVH FV  +R HP    IY +L ++  ++++     +
Sbjct: 484 ARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTS 543

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            +  LHD   E+K + + +HSEKLAL++ LI  P  + PI I KN+R+CGDCH FMK A+
Sbjct: 544 IECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNI-PIIIHKNLRICGDCHSFMKIAA 602

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I  R +I+RD+NRFHHF  G+CSC D W
Sbjct: 603 HITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 192/376 (51%), Gaps = 45/376 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D ++ N L++ + + G     R +FD M +R  VS+NT IAG+ + G   +AL++FSRM 
Sbjct: 91  DTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMH 150

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++    +++T  S + ACA    +   KQ+H   +   L  N FV  A+ D+YAK   I 
Sbjct: 151 REGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIK 210

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A W+F++M  R LV+W+ + +GY++NG  ++ + LF+  Q  G+   E T+S IL AC 
Sbjct: 211 DACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACA 270

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G+I+ A  LF  ++ K+ V W  
Sbjct: 271 SLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVVIWNA 330

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  ++++    +A+ILF +M    + P++ +  SV+S C+    +  G+  H  ++++ 
Sbjct: 331 MIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGR--HYFSLLMS 388

Query: 354 ---VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLE-A 408
              V+ ++L  S ++D+  + G TD+AW + N MP     S W S++ G  +N  ++  A
Sbjct: 389 DRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLL-GSCRNYNNIRLA 447

Query: 409 LALYDKLLQENLKPDS 424
               ++L Q  L+PD+
Sbjct: 448 RIAAEQLFQ--LEPDN 461



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 149/351 (42%), Gaps = 77/351 (21%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  +IS  +  CAK  SL  G+  HG A+  G+  D L  + LI++Y KCG  D A  VF
Sbjct: 56  DVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVF 115

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA-DLF 440
           ++M  R++VSWN+MI GY  +G+D++AL L+ ++ +E      FT  S + AC     + 
Sbjct: 116 DIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAIN 175

Query: 441 ERGQNH-------FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           E  Q H        DS S V   T  LD YA       + + +  A  + + +P +   +
Sbjct: 176 ECKQLHTIALKLALDSNSFVG--TAILDVYA-------KCNMIKDACWVFEKMPER-TLV 225

Query: 494 IWSTLLS---------------VCAMKGDIKHGEMA--------ARHLFELEPINAGPYI 530
            WS+L +                CA +  ++  E          A    ++E I     I
Sbjct: 226 TWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVI 285

Query: 531 M-------------LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           +             L ++YA CG+ E   ++ + M+ KNV          I N +    S
Sbjct: 286 LKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHKNVV---------IWNAMIASFS 336

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHS 628
                 E  I++E       K+Q+ G  PN    L        V S+C H+
Sbjct: 337 RHAHSWEAMILFE-------KMQQLGIFPNEVTYL-------SVLSVCSHA 373


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/624 (33%), Positives = 347/624 (55%), Gaps = 40/624 (6%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G++     + D++P   ++++     A   SGS+   R +FD++   ++  +NT I G++
Sbjct: 39  GQMLKTGLILDEIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           N     EAL ++  M         YT    L AC+ +  L   +QIH  I+    G  ++
Sbjct: 95  NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIY 154

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
             N+L ++Y+K G+I  AR LFD+++ R+ VSWN MI GY K G+               
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE--------------- 199

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                               I+ A  +F+ + E++ + WT+MI G    GK ++AL LF+
Sbjct: 200 --------------------IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M +  ++ D  ++ S + +CA L  L  G+ +H       ++ D ++   LIDMY KCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             ++A  VF  M  + V  W +MI+GYA +G+  EAL  + K+    ++P+  TF  +L+
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L    +  F+S+  +HG  PS++HY CM++LLGR+  + +A +LI+++P KPN+
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            IW  LL+ C + G+++ G+   + L +++P + G YI L++++AA G W   A +R  M
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K + V K    S I ++   H+F++ D +HP+ + I   L +++++L+E G+ P    +L
Sbjct: 480 KEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLL 539

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            D +++EK  +I +HSEKLA+ + LI    G+T IRI+KN+RVC DCH  +K  S +  R
Sbjct: 540 LDLEDKEKETAIHHHSEKLAVTFGLISTKPGMT-IRIVKNLRVCEDCHTVIKLISKVYAR 598

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RD  RFH F  GNC+C D W
Sbjct: 599 EILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 145/253 (57%), Gaps = 3/253 (1%)

Query: 29  LVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           L+  C+ ++ +E  +++ +H+  + F   +  +  N LL+ Y+KSG +  AR LFD++  
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGF--GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD +SWN+++  + + G ++    +F+ MP R+ +S+ + I+G    G  +EAL +F RM
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    +  +   VS L ACA L  L +GK IH  I    +  +  +   L DMYAK G++
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A  +F +M  + +  W  MISGY  +G+ ++ ++ F +MQ  G+ P+++T + IL AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 268 FQTGRIDDAGRLF 280
              G + +A  LF
Sbjct: 362 SHAGLVHEAKLLF 374



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 165/406 (40%), Gaps = 101/406 (24%)

Query: 63  NRLLHFYAK--SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           ++LL F A   SG L YAR +FD++   +   W                           
Sbjct: 54  SKLLAFCASPNSGSLAYARTVFDRIFRPNTFMW--------------------------- 86

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
               NT I G++N     EAL ++  M         YT    L AC+ +  L   +QIH 
Sbjct: 87  ----NTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHA 142

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK------ 234
            I+    G  ++  N+L ++Y+K G+I  AR LFD+++ R+ VSWN MI GY K      
Sbjct: 143 HIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEM 202

Query: 235 -------------------------NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
                                     G+PK+ ++LF  MQ  G+  D V + + L AC  
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACAD 262

Query: 270 TGRID-----------------------------------DAGRLFHVIKEKDNVCWTTM 294
            G +D                                   +A  +F  ++EK    WT M
Sbjct: 263 LGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAM 322

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-HGKAVVLG 353
           I GY  +G+  +AL  F +M +  V P++ + + ++++C+    ++  +++      + G
Sbjct: 323 ISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 382

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
               +     ++D+  + G+  +A  +   MP + N   W +++N 
Sbjct: 383 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNA 428


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/651 (33%), Positives = 351/651 (53%), Gaps = 78/651 (11%)

Query: 48  HMDLNFYEPNTTFLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNALLSAHARSGS 105
           H+    + P+T  LHN    F  K     L         +PL  + S  A  S+ + +  
Sbjct: 9   HVSPLHHRPSTHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYA-- 66

Query: 106 VQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
               + +F  +   +   +NT +  FA      +A+ +F R+++    P  YT    L A
Sbjct: 67  ----KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKA 122

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           C++LLD+R GK +HG +    L  N+F++N +  +YA  GEI  AR +FD+M  R++++W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           N+MI+  +K G  +    LF E                                   + E
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAE-----------------------------------MPE 207

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           ++   WT+MI GY Q GK ++A+ LF EM    + P++ ++ +V+ +CA + +L  G+ +
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H  +   G + ++ V + LIDMY KCG  +DA  +F+ M  R VVSW++MI G A +G+ 
Sbjct: 268 HDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRA 327

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            +ALAL++K++   +KP++ TF+ +L AC H  + E+G+ +F S++  +GI P ++HY C
Sbjct: 328 EDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGC 387

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           M++L  R+  + +A + I ++P  PN ++W  LL  C +  ++K  E A RHL +L+P+N
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLN 447

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA  GRWEDVA +R  M+ +        +W                    
Sbjct: 448 DGYYVVLSNIYAEAGRWEDVARVRKLMRDRG-------TW-------------------- 480

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
                   KL+++++  G+ PNT +VL D +E++K K +  HSEKLA+ + LIK   G T
Sbjct: 481 -------EKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPG-T 532

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            IRIMKN+RVC DCH  +K  S +  R I++RD NRFH F  G+CSC D W
Sbjct: 533 VIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/615 (35%), Positives = 350/615 (56%), Gaps = 30/615 (4%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R++FD++  R  + +NT I  +    FS + + +F  +  + + P ++T    +  CA+L
Sbjct: 67  RSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARL 125

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
             ++ GKQIHG  +    G +VFV+ +L +MY+K GEID AR +FD M ++++V WN +I
Sbjct: 126 GVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLI 185

Query: 230 SGYLKNGQPKKCIDLFQEM-------------------------QLLGLNP--DEVTVSN 262
            GY + G+    + LF+EM                         +L    P  + V+ + 
Sbjct: 186 DGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNA 245

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++    ++G  D A  LF+ +   D V W  MI GY  NG+  DA+ +F  ML    RP 
Sbjct: 246 MINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPS 305

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
             ++ SV+S+ + LA L  G+ +H      G + D ++ ++LI+MY KCG  + A TVF 
Sbjct: 306 HATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFR 365

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            +  + V  W ++I G   +G    ALAL+ ++ +  LKP++  F+ VL+AC HA L + 
Sbjct: 366 AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDD 425

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+ +FD +   + I P+L+HY C++++L R+  +++A + I+++P  PN +IW +LL   
Sbjct: 426 GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGS 485

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
              G I  GE AA+ + E+ P   G YI+LSNMYAA G WE V+ +R  M  +  +K   
Sbjct: 486 RNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPG 545

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ-EEEKV 621
            S +E    +H+F+  D +HP+T+ IY ++S++ +KL+  G  P+T  VL   + E+EK 
Sbjct: 546 CSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKE 605

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             +  HSE+LA+A+ LI    G+ PIRIMKN+RVC DCH   K  S I  R II+RD+ R
Sbjct: 606 AELENHSERLAIAFGLINVKPGI-PIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCR 664

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF  G+CSC D W
Sbjct: 665 FHHFKNGSCSCMDYW 679


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 331/616 (53%), Gaps = 39/616 (6%)

Query: 84  KMPLRDIISWNALL-SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           K  L D+ S  ALL SA+ARS  + D R  FD  P RD   Y+  +A  ++       L 
Sbjct: 29  KEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSSDPELVLP 88

Query: 143 VFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           +  RM   D   P  +   S  +A  +L  LR G+Q+H          +  V+++L DMY
Sbjct: 89  LLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMY 148

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G    AR +FD +  +N V W  +ISGY  NG   + +DLFQ M   GL        
Sbjct: 149 CKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGL-------- 200

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR- 320
                                        WT +I G+ + G    A+ LF EM  +D+R 
Sbjct: 201 ---------------------------FTWTALISGFVKAGNYTGAMGLFVEMRRDDIRI 233

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            D F +++V+   A LA+L  G+ +HG  + LG    ++V +AL+DMY KC     A  V
Sbjct: 234 HDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREV 293

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +  R+V+SW +++ G AQ+G+  E  ALY+++L   +KP+  TFV ++ AC HA L 
Sbjct: 294 FEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLV 353

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++G+  FDS+   +G+ P + HY C ++LL RS  + +A  LI ++P++P+   W  LLS
Sbjct: 354 QKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLS 413

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C    D +     A +L EL P +   YI+LSN+YA   +W+ VA +R  M    ++K 
Sbjct: 414 ACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKV 473

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
             YSW+E   +   F + +      E I   L +L+ ++++ G+ P+T  V+HD +E EK
Sbjct: 474 PGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEK 533

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + +  HSE+LA+A+ ++K P G + IR++KN+RVCGDCH  MKF S I  R II+RD++
Sbjct: 534 EQHLFVHSERLAVAFGILKSPPG-SVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDAS 592

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  GNCSC + W
Sbjct: 593 RFHHFEDGNCSCSEFW 608



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 155/310 (50%), Gaps = 16/310 (5%)

Query: 35  RVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWN 94
           R+  + L ++L +H   + Y  +   + + L+  Y K G    AR +FD + +++ + W 
Sbjct: 115 RLRSLRLGRQLHAHFAASPYSADNV-VKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWT 173

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           AL+S +A +G   +   LF  MP     ++   I+GF   G    A+ +F  M++D    
Sbjct: 174 ALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRI 233

Query: 155 TD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            D +   + +   A L  L  G+Q+HG ++      ++ V NAL DMY+K  +I  AR +
Sbjct: 234 HDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREV 293

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ +  R+++SW  ++ G  ++G+ ++   L+  M L G+ P+EVT   ++ AC   G +
Sbjct: 294 FEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLV 353

Query: 274 DDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
               +LF  +K +  +        C+  ++   +++G   +A  L   M  E   PD+ +
Sbjct: 354 QKGRQLFDSMKREYGMKPGVQHYTCYLDLL---SRSGYLSEAEKLITTMPYE---PDEAT 407

Query: 326 ISSVVSSCAK 335
             +++S+C K
Sbjct: 408 WGALLSACKK 417


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/573 (36%), Positives = 316/573 (55%), Gaps = 36/573 (6%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +N  I G +      +A   + + Q+    P + T    + +C +L  +  G Q HG I+
Sbjct: 87  FNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHII 146

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 +V+V+N+L  MYA  G+ + A  +F RM   ++VSW  MI G+       KC  
Sbjct: 147 KHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGF------NKC-- 198

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                      G ++ A +LF  + EK+ V W+TMI GY QN  
Sbjct: 199 ---------------------------GDVESARKLFDQMPEKNLVTWSTMISGYAQNNH 231

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            + A+ LF  + S+ VR ++  + SV+SSCA L +L  G+  H   V  G+  +L++ +A
Sbjct: 232 FDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTA 291

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+DMY +CG  D A  VF  +P R+ +SW ++I G A +G    +L  +  +++  L P 
Sbjct: 292 LVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF +VLSAC H  L ERG   F+S+   H + P L+HY CM++LLGR+  +++A   +
Sbjct: 352 DITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFV 411

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             +P KPN+ +W  LL  C +  + + GE   + L +L P ++G Y++LSN+YA    WE
Sbjct: 412 LKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWE 471

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
            V  +R  MK+K +KK   +S IE+D +VHKF   D +HPE + I     +++ +++ AG
Sbjct: 472 KVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAG 531

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           +  NT   L D  EEEK  ++  HSEKLA+A+ +++   G TPIRI+KN+RVC DCH   
Sbjct: 532 YRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAG-TPIRIVKNLRVCEDCHTAT 590

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K  S + GR +I+RD NRFHHF  G CSC D W
Sbjct: 591 KLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 162/310 (52%), Gaps = 9/310 (2%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           LV  CT+++ + +  +   H+  + +E +  ++ N L+H YA  G    A  +F +M   
Sbjct: 125 LVKSCTKLHCISMGSQAHGHIIKHGFEKDV-YVQNSLVHMYATFGDTEAATLIFQRMYYV 183

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++SW +++    + G V+  R LFD+MP ++ V+++T I+G+A      +A+++F  +Q
Sbjct: 184 DVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQ 243

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                  +   VS +++CA L  L  G++ H  +V   +  N+ +  AL DMYA+ G ID
Sbjct: 244 SQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSID 303

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KA W+F+ +  R+ +SW  +I+G   +G  ++ +  F  M   GL P ++T + +L AC 
Sbjct: 304 KAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACS 363

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++   ++F  +K    V      +  M+    + GK E+A      +L   V+P+ 
Sbjct: 364 HGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERF---VLKMPVKPNA 420

Query: 324 FSISSVVSSC 333
               +++ +C
Sbjct: 421 PVWGALLGAC 430



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 129/286 (45%), Gaps = 37/286 (12%)

Query: 256 DEVTVSNILGACFQ----TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           D    S ++  C      T  ID A R+F  I+  +   +  MI G++ +   + A   +
Sbjct: 48  DVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFY 107

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            +   + + PD  +   +V SC KL  +  G   HG  +  G + D+ V ++L+ MY   
Sbjct: 108 VQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATF 167

Query: 372 GVTDDAWTVFNMMPTRNVVSWNS-------------------------------MINGYA 400
           G T+ A  +F  M   +VVSW S                               MI+GYA
Sbjct: 168 GDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYA 227

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           QN    +A+ L+  L  + ++ +    VSV+S+C H    E G+   D +   +G+T +L
Sbjct: 228 QNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVK-NGMTLNL 286

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
                ++++  R   +DKAV + + LP + ++L W+ L++  AM G
Sbjct: 287 ILGTALVDMYARCGSIDKAVWVFEDLPER-DTLSWTALIAGLAMHG 331


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 331/591 (56%), Gaps = 40/591 (6%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R + + +  R+   +   I G+A +G   EA+ ++  M+K+   P  +T  + L AC  +
Sbjct: 103 RRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTM 162

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
            DL  G+Q H +         V+V N + DMY K   ID AR +FD M  R+++SW  +I
Sbjct: 163 KDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELI 222

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           + Y +                                    G ++ A  LF  +  KD V
Sbjct: 223 AAYAR-----------------------------------VGNMECAAELFESLPTKDMV 247

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL-ASLYHGQVVH-G 347
            WT M+ G+ QN K ++AL  F+ M    +R D+ +++  +S+CA+L AS Y  + V   
Sbjct: 248 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 307

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
           +       D +++ SALIDMY KCG  ++A  VF  M  +NV +++SMI G A +G+  E
Sbjct: 308 QKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQE 367

Query: 408 ALALYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           AL L+  ++ Q  +KP++ TFV  L AC H+ L ++G+  FDS+    G+ P+ DHY CM
Sbjct: 368 ALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCM 427

Query: 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
           ++LLGR+  + +A++LIK++  +P+  +W  LL  C +  + +  E+AA HLFELEP   
Sbjct: 428 VDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDII 487

Query: 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW-IEIDNKVHKFVSEDRTHPET 585
           G YI+LSN+YA+ G W  V  +R  +K K +KK  A SW ++ + ++HKF   +  HP +
Sbjct: 488 GNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMS 547

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             I ++L +L+++L   G+ P+   V +D  +  K   +  H+EKLALA+ L+      T
Sbjct: 548 NKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDST 607

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I IMKN+R+C DCH FM+ AS++ G+ II+RD+ RFHHF  G+CSC D W
Sbjct: 608 -ITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 163/320 (50%), Gaps = 18/320 (5%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH--NRLLHFYAKSGKLFYARDLF 82
            ++ L+  C  + D+ L ++  +     F      F++  N ++  Y K   +  AR +F
Sbjct: 151 TFSALLKACGTMKDLNLGRQFHAQ---TFRLRGFCFVYVGNTMIDMYVKCESIDCARKVF 207

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D+MP RD+ISW  L++A+AR G+++    LF+ +P +D V++   + GFA     +EAL+
Sbjct: 208 DEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALE 267

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLR---RGKQIHGKIVVGNLGGNVFVRNALTD 199
            F RM+K      + T    ++ACAQL   +   R  QI  K    +   +V + +AL D
Sbjct: 268 YFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGY-SPSDHVVIGSALID 326

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEV 258
           MY+K G +++A  +F  MNN+N+ +++ MI G   +G+ ++ + LF  M     + P+ V
Sbjct: 327 MYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTV 386

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNE 313
           T    L AC  +G +D   ++F  + +   V      +T M+    + G+ ++AL L   
Sbjct: 387 TFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446

Query: 314 MLSEDVRPDKFSISSVVSSC 333
           M    V P      +++ +C
Sbjct: 447 M---SVEPHGGVWGALLGAC 463



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 99/474 (20%), Positives = 188/474 (39%), Gaps = 139/474 (29%)

Query: 32  DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF--YARDLFDKMPLRD 89
           DC  +N +   K++  H+ L      + ++  +L+    K G     YAR + + +  R+
Sbjct: 58  DCINLNQI---KQIHGHV-LRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRN 113

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
              W A+                               I G+A +G   EA+ ++  M+K
Sbjct: 114 PFLWTAV-------------------------------IRGYAIEGKFDEAIAMYGCMRK 142

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +   P  +T  + L AC  + DL  G+Q H +         V+V N + DMY K   ID 
Sbjct: 143 EEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDC 202

Query: 210 ARWLFDRMNNRNLVS-------------------------------WNLMISGYLKNGQP 238
           AR +FD M  R+++S                               W  M++G+ +N +P
Sbjct: 203 ARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKP 262

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
           ++ ++ F  M+  G+  DEVTV+  + AC Q                             
Sbjct: 263 QEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGS 322

Query: 270 --------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVR 320
                    G +++A  +F  +  K+   +++MI+G   +G+ ++AL LF+ M+++ +++
Sbjct: 323 ALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIK 382

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P+  +    + +C+     + G V  G+ V                        D  +  
Sbjct: 383 PNTVTFVGALMACS-----HSGLVDQGRQVF-----------------------DSMYQT 414

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           F + PTR+   +  M++   + G+  EAL L   +   +++P    + ++L AC
Sbjct: 415 FGVQPTRD--HYTCMVDLLGRTGRLQEALELIKTM---SVEPHGGVWGALLGAC 463



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 130/278 (46%), Gaps = 41/278 (14%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+   ++ ++   WT +I GY   GK ++A+ ++  M  E++ P  F+ S+++ +C  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS---- 391
           +  L  G+  H +   L     + V + +IDMY KC   D A  VF+ MP R+V+S    
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTEL 221

Query: 392 ---------------------------WNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
                                      W +M+ G+AQN +  EAL  +D++ +  ++ D 
Sbjct: 222 IAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADE 281

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY---ACMINLLGRSSDVDKAVD 481
            T    +SAC       +  +    I+   G +PS DH    + +I++  +  +V++AV+
Sbjct: 282 VTVAGYISACAQLGA-SKYADRAVQIAQKSGYSPS-DHVVIGSALIDMYSKCGNVEEAVN 339

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           +  S+ +K N   +S+++   A  G  +     A HLF
Sbjct: 340 VFMSMNNK-NVFTYSSMILGLATHGRAQE----ALHLF 372



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 20/217 (9%)

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            SE     +  +SS++S      +L   + +HG  +  G+D    + + LI    K GV 
Sbjct: 38  FSEISNQKELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVP 97

Query: 375 DDAWT--VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
            D +   V   +  RN   W ++I GYA  G+  EA+A+Y  + +E + P SFTF ++L 
Sbjct: 98  MDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLK 157

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYA------CMINLLGRSSDVDKAVDLIKSL 486
           AC        G+         H  T  L  +        MI++  +   +D A  +   +
Sbjct: 158 ACGTMKDLNLGRQ-------FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEM 210

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           P + + + W+ L++  A  G+++     A  LFE  P
Sbjct: 211 PER-DVISWTELIAAYARVGNME----CAAELFESLP 242


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/563 (37%), Positives = 316/563 (56%), Gaps = 41/563 (7%)

Query: 173 RRGKQIHGKIVVGNLGGNV--FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230
           R G+  H +I+   L   +  F+ N L +MY+K    + A+ L     NR++V+W  +I+
Sbjct: 23  RLGRAAHAQII-KTLDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIA 81

Query: 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVT-----------------------------VS 261
           G ++NG+    +  F  M+   + P++ T                             +S
Sbjct: 82  GSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 262 NILGACF------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           ++   C       + G  ++A ++F  + E++   W   +      G+ +DAL  F E  
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEAR 201

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            E + P  F +SSV+S+CA L+ L  G+ VH  AV   V  ++ V SAL+DMY KCG  +
Sbjct: 202 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 261

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL--QENLKPDSFTFVSVLSA 433
           DA   F+ MP RN+V+WN+MI GYA  GQ   A+ L+D++      + P+  TFV VLSA
Sbjct: 262 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSA 321

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C  A     G   F+S+   +GI P  +HYAC+++LLGR+  V++A   IK +P +P   
Sbjct: 322 CSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVS 381

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +W  LL    M G  + G++AA +LFEL+P+++G +++LSNM+AA GRWE+   +R  MK
Sbjct: 382 VWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMK 441

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
              +KK A  SWI   N VH F ++D +H     I   L+KL  +++ AG+ P+T   L 
Sbjct: 442 DVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALF 501

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D +EEEK   + YHSEK+ALA+ LI  P GV PIRI KN+R+CGDCH  +KF S I+GR 
Sbjct: 502 DLEEEEKAMEVWYHSEKIALAFGLISIPAGV-PIRITKNLRICGDCHSAIKFISGIVGRE 560

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD+N FH F    CSC+D W
Sbjct: 561 IIVRDNNLFHRFRDNQCSCRDYW 583



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 172/401 (42%), Gaps = 70/401 (17%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P  +F++N L++ Y+K  +   A+ L    P R +++W AL++     GSVQ+       
Sbjct: 39  PLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIA-----GSVQN------- 86

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                              G    AL  FS M++D  +P D+T   A  A   L     G
Sbjct: 87  -------------------GRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVG 127

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           KQ+H   V      +VFV  +  DMY+K G  ++AR +FD M  RN+ +WN  +S  +  
Sbjct: 128 KQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
           G+    +  F E +  G+ P +  VS++L AC                            
Sbjct: 188 GRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVG 247

Query: 269 --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML--SED 318
                   + G I+DA R F  + E++ V W  MI GY   G+ + A+ LF+EM   S  
Sbjct: 248 SALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHR 307

Query: 319 VRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           V P+  +   V+S+C++  S+  G ++        G++      + ++D+  + G+ + A
Sbjct: 308 VAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQA 367

Query: 378 WTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQ 417
           +     MP R  VS W +++      G+        D L +
Sbjct: 368 YQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFE 408



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 48/270 (17%)

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL--LVSSALIDMYCKCGVTDDAWTVFNMM 384
           S+V + C++L    H Q++        +D+ L   + + L++MY K    + A  + ++ 
Sbjct: 15  SAVSTQCSRLGRAAHAQIIKT------LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLT 68

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC---------- 434
           P R+VV+W ++I G  QNG+   AL  +  + +++++P+ FTF     A           
Sbjct: 69  PNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLVGK 128

Query: 435 -LHADLFERGQ--------NHFDSISAVHGIT---------------PSLDHYACMINLL 470
            +HA   + GQ        + FD  S   G+T                + + Y     L 
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKA-GLTEEARKMFDEMPERNIATWNAYLSNSVLE 187

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GR  D   A    +    +P   + S++LS CA    ++ G+  + H   ++    G   
Sbjct: 188 GRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGK--SVHTLAVKACVVGNIF 245

Query: 531 M---LSNMYAACGRWEDVASIRSSMKSKNV 557
           +   L +MY  CG  ED       M  +N+
Sbjct: 246 VGSALVDMYGKCGSIEDAERAFDEMPERNL 275



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 106/266 (39%), Gaps = 43/266 (16%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G   T+   + ++  C  ++ +E+ K + + + +        F+ + L+  Y K G +  
Sbjct: 204 GIEPTDFMVSSVLSACAGLSVLEVGKSVHT-LAVKACVVGNIFVGSALVDMYGKCGSIED 262

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A   FD+MP R++++WNA++  +A  G       LFD+M                     
Sbjct: 263 AERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTC------------------- 303

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN-- 195
                        R  P   T V  L+AC++   +  G +I  + + G  G      +  
Sbjct: 304 ----------GSHRVAPNYVTFVCVLSACSRAGSVNVGMEIF-ESMRGRYGIEPGAEHYA 352

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            + D+  + G +++A     +M  R  VS W  ++      G+ +  +       L  L+
Sbjct: 353 CVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE--LGKVAADNLFELD 410

Query: 255 P----DEVTVSNILGACFQTGRIDDA 276
           P    + V +SN+  A    GR ++A
Sbjct: 411 PLDSGNHVLLSNMFAA---AGRWEEA 433


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/654 (34%), Positives = 354/654 (54%), Gaps = 69/654 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F  +   + + +NT + G+A       AL+++  M      P  YT    L +CA+  
Sbjct: 21  SVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSK 80

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS------ 224
               G+QIHG ++      +++V  +L  MYA+ G ++ A  +FDR ++R++VS      
Sbjct: 81  AFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALIT 140

Query: 225 -------------------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                                    WN MISGY + G  K+ ++LF+EM    + PDE T
Sbjct: 141 GYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGT 200

Query: 260 VSNILGACFQT-----------------------------------GRIDDAGRLFHVIK 284
           +  +L AC Q+                                   G+++ A  LF  + 
Sbjct: 201 MVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGLS 260

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD V W T+I GYT     ++AL+LF EML     P+  +I S++ +CA L ++  G+ 
Sbjct: 261 CKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRW 320

Query: 345 VHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +H      +  V +   + ++LIDMY KCG  + A  VFN M  +++ SWN+MI G+A +
Sbjct: 321 IHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 380

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+      L+ ++ +  ++PD  TFV +LSAC H+   + G++ F S++  + ITP L+H
Sbjct: 381 GRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEH 440

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+LLG S    +A ++IK++P +P+ +IW +LL  C   G+++  E  AR+L ++E
Sbjct: 441 YGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVE 500

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G Y++LSN+YA  G W++VA +R+ +  K +KK    S IEID++VH+F+  D+ H
Sbjct: 501 PENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLH 560

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P    IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    
Sbjct: 561 PRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 620

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 621 G-TKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 230/467 (49%), Gaps = 53/467 (11%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
            + S G       +  L+  C +    E  +++  H+    YEP+  ++H  L+  YA++
Sbjct: 56  VMISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDL-YVHTSLISMYAQN 114

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G+L  A  +FD+   RD++S+ AL++ +A SG+++  + +FD++P++D VS+N  I+G+A
Sbjct: 115 GRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYA 174

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             G  +EAL++F  M K    P + T V+ L+ACAQ   +  G+Q+H  I     G N+ 
Sbjct: 175 ETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLK 234

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           + NAL D+Y+K G+++ A  LF+ ++ +++VSWN +I GY      K+ + LFQEM   G
Sbjct: 235 IVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSG 294

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHV-----IKEKDNV------------------ 289
            +P++VT+ +IL AC   G I D GR  HV     +K+  N                   
Sbjct: 295 ESPNDVTIVSILPACAHLGAI-DIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIE 353

Query: 290 ---------------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
                           W  MI G+  +G+      LF+ M    + PD  +   ++S+C+
Sbjct: 354 AAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACS 413

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSAL------IDMYCKCGVTDDAWTVFNMMPTR- 387
                + G++  G+ +   +  D  ++  L      ID+    G+  +A  +   MP   
Sbjct: 414 -----HSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEP 468

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSA 433
           + V W S++    ++G    A +    L++ E   P S+  +S + A
Sbjct: 469 DGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYA 515



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 161/375 (42%), Gaps = 76/375 (20%)

Query: 261 SNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           S +L  C  +   D    A  +F  I+E + + W TM+ GY  +     AL L+  M+S 
Sbjct: 1   SKLLEFCVLSPHFDGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISL 60

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + P+ ++   ++ SCAK  +   GQ +HG  + LG + DL V ++LI MY + G  +DA
Sbjct: 61  GLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDA 120

Query: 378 WTVFNMMPTRNVVSWNS-------------------------------MINGYAQNGQDL 406
             VF+    R+VVS+ +                               MI+GYA+ G   
Sbjct: 121 HKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYK 180

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466
           EAL L+ ++++ N++PD  T V+VLSAC  +   E G+     I   HG   +L     +
Sbjct: 181 EALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDD-HGFGSNLKIVNAL 239

Query: 467 INLLGRSSDVDKAVDLIKSLPHK----------------------------------PNS 492
           I+L  +   V+ A  L + L  K                                  PN 
Sbjct: 240 IDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPND 299

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLF---ELEPINAGPYIMLS--NMYAACGRWEDVAS 547
           +   ++L  CA  G I  G     H++   +L+ +   P +  S  +MYA CG  E    
Sbjct: 300 VTIVSILPACAHLGAIDIGRWI--HVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQ 357

Query: 548 IRSSMKSKNVKKFAA 562
           + +SM  K++  + A
Sbjct: 358 VFNSMLHKSLSSWNA 372


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/603 (35%), Positives = 332/603 (55%), Gaps = 38/603 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEP 154
           L+SA+A+S  + D R LFD+ P RD   Y++ +A  ++       L +  RM   D   P
Sbjct: 44  LVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSESPELVLPLLRRMLSADALRP 103

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +   S  +A A+L  L  GKQ+HG  V      +  V+++L DMY K G  D AR +F
Sbjct: 104 DHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVF 163

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D +  +N V W  +ISGY+ NG                                   R D
Sbjct: 164 DSIVAKNSVMWTALISGYVLNG-----------------------------------RSD 188

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSSC 333
           +A  LF  +  +    WT +I G+ ++G+   A+ LF +M  + V   D F +SS +   
Sbjct: 189 EALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGA 248

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A LA+   G+ +H   + LG    ++V +A++DMY KC     A  VF  +  R+++SW 
Sbjct: 249 ADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWT 308

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           +M+ G AQ+G+  EA +LYD+++   +KP+  TFV ++ AC HA L ++G+  FDS+   
Sbjct: 309 TMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGE 368

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +GI P L HY C ++LL RS  + +A +LI ++P+ P+   W++LLS C    + +    
Sbjct: 369 YGINPRLQHYTCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIR 428

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
            A +L EL P     Y++LSN+YA  G+W+ V ++R  M    ++K   YSWIE+  +  
Sbjct: 429 VADNLLELRPKYPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFR 488

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
            F + +      E I   L +L+ ++++ G+ P+T  V+HD +E EK   +C HSE+LA+
Sbjct: 489 LFHAGEVPIDLREEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAV 548

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ +++ P G + IR++KN+RVC DCH  MKF S+I  R II+RD++RFHHF GG CSC 
Sbjct: 549 AFGILRSPLG-SVIRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCS 607

Query: 694 DNW 696
           + W
Sbjct: 608 EFW 610



 Score =  129 bits (325), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 83/311 (26%), Positives = 153/311 (49%), Gaps = 16/311 (5%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
            R+  + L K+L  H   + Y  +   + + L+  Y K G    AR +FD +  ++ + W
Sbjct: 116 ARLRSLCLGKQLHGHFVASPYSSDDV-VKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMW 174

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+S +  +G   +   LF  MP R   ++   I+GF   G S  A+++F  M++D   
Sbjct: 175 TALISGYVLNGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVS 234

Query: 154 PTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
             D +   SA+   A L     G+Q+H   +      ++ V NA+ DMY+K  +I  AR 
Sbjct: 235 IDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSARE 294

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ +  R+++SW  M+ G  ++G+ ++   L+  M L G+ P+EVT   ++ AC   G 
Sbjct: 295 VFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGL 354

Query: 273 IDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
           +    +LF  +K +  +        C+  ++   +++G   +A  L   M      PD+ 
Sbjct: 355 VQKGRQLFDSMKGEYGINPRLQHYTCYLDLL---SRSGHLAEAEELITTM---PYVPDEA 408

Query: 325 SISSVVSSCAK 335
           + +S++S+C K
Sbjct: 409 TWASLLSACKK 419


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/631 (36%), Positives = 361/631 (57%), Gaps = 22/631 (3%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM------PIRDSVSYNTAI 128
           L YA+ +F  +       +N+L+ A + S +  +   L+  M      P  D ++Y   I
Sbjct: 145 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKP--DHMTYPFVI 202

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL- 187
                   +   L V + + K  FE   Y   S ++  A   DL   KQ+       NL 
Sbjct: 203 KACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF------NLC 256

Query: 188 -GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
              +V   NA+ D Y K  E+  AR +FDRM  R+++SWN MI+GY   G+  +   LF 
Sbjct: 257 SARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFD 316

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
           EM    L    V+ +++L    + G ++DA  LF  +  +D V W +M+  Y Q GK  +
Sbjct: 317 EMPERNL----VSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNE 372

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           AL LF++M +  V+P + ++ S++S+CA L +L  G  +H       ++ + +V +AL+D
Sbjct: 373 ALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVD 432

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY KCG    A  VFN M +++V++WN++I G A +G   EA  L+ ++ +  ++P+  T
Sbjct: 433 MYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDIT 492

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           FV++LSAC HA + + GQ   D +S+ +GI P ++HY C+I+LL R+  +++A++LI ++
Sbjct: 493 FVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTM 552

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +PN      LL  C + G+ + GEM  + L  L+P ++G YI+LSN+YAA  +W+D  
Sbjct: 553 PMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDAR 612

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA-GFS 605
            +R+ MK   + K    S IE+   VH+FV+ D +HPE+  IYE+L+++  +L+ A G+S
Sbjct: 613 KVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYS 672

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
            +T  VL D +EE+K  ++  HSEKLA+AY L+        IRI+KN+RVC DCH  +K 
Sbjct: 673 ADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHL-DSKEAIRIVKNLRVCRDCHHVIKL 731

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S + GR II+RD NRFHHF  G CSC D W
Sbjct: 732 ISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/401 (29%), Positives = 208/401 (51%), Gaps = 24/401 (5%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +++ YA  GK+  A+ LFD+MP R+++SWN++L+   + G+V+D   LF +MP RD V
Sbjct: 296 NTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVV 355

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           S+N+ +A +A  G   EAL +F +M+    +PT+ T VS L+ACA L  L +G  +H  I
Sbjct: 356 SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 415

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  N  V  AL DMYAK G+I  A  +F+ M ++++++WN +I+G   +G  K+  
Sbjct: 416 NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQ 475

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVG 297
            LF+EM+  G+ P+++T   IL AC   G +D+  +L   +     +      +  +I  
Sbjct: 476 QLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDL 535

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             + G  E+A+ L   M  E   P+  ++ +++  C    +   G++V  + + L     
Sbjct: 536 LARAGFLEEAMELIGTMPME---PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHS 592

Query: 358 ---LLVSSALIDMYCKCGVTDDAWTVFNMM--------PTRNVVSWNSMINGY-AQNGQD 405
              +L+S    ++Y      DDA  V N+M        P  +V+    M++ + A +   
Sbjct: 593 GRYILLS----NIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 648

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
            E+  +Y+KL + + +  S    S  +  +  D+ E  + H
Sbjct: 649 PESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 689


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/497 (39%), Positives = 304/497 (61%), Gaps = 5/497 (1%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYAK G +D AR  FD    R++   N+M++ Y+   +  +   +F  M +     D V+
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPM----RDLVS 56

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            + ++      G +  A  +F   +++D   W++MI  Y ++ + ++AL L+ EM +  +
Sbjct: 57  WNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD  ++ SVVS+C+ L +L  G  VH       ++ DL + +ALIDMY KCG  + A  
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQR 176

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF+ MP ++V +W+SMI G A +G   E+L+L+ K++ E +KP+  TFV VL AC H  L
Sbjct: 177 VFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGL 236

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
              G+ +F S++ VHGI P+++HY CM++LLGRS  V++A  LI+S+  +P+++IW  LL
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             C +  +++  E A   L  L+P+  G Y++LSN+YA    WE VA +R +++  N+++
Sbjct: 297 GACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQR 356

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
               S IE D K+H+FVS DR HP ++ IY  L +++ +L++AG+ P T LVL D  E+ 
Sbjct: 357 IPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQS 416

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K +S+  HSEKLA+A+ L+  P   T IRI KN+R C DCH  MK  S +  R +I+RD 
Sbjct: 417 KERSLAEHSEKLAIAFALLTTPARST-IRITKNLRACEDCHSAMKLISLVYDRKLIVRDR 475

Query: 680 NRFHHFVGGNCSCKDNW 696
           NRFHHF  G CSCKD W
Sbjct: 476 NRFHHFSEGQCSCKDYW 492



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 183/385 (47%), Gaps = 25/385 (6%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            FL N +L  Y    ++  AR +FD MP+RD++SWN ++  +A  G V   R +FD    
Sbjct: 23  VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTED 82

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD+ S+++ I+ +A    S+EAL+++  M      P   T VS ++AC+ L  L  G ++
Sbjct: 83  RDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITLVSVVSACSDLGALAVGAEV 142

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +    +  ++ +  AL DMYAK G+I+ A+ +FDRM  +++ +W+ MI G   +G  
Sbjct: 143 HRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLG 202

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT----- 293
            + + LF +M   G+ P+ VT   +L AC   G + +  + F  + E   +  T      
Sbjct: 203 HESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGC 262

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+    ++G  E+A  L   M  E   PD     +++ +C    ++   +    K  VL 
Sbjct: 263 MVDLLGRSGHVEEARQLIRSMTFE---PDTIIWRALLGACRIHKNVEIAEEAMAKLRVLD 319

Query: 354 VDDD---LLVSSALIDMYCKCGVTDDAWTV----FNMMPTRNVVSWNSMINGYAQNGQDL 406
              D   +L+S+         GV +   T+       +P R+ + W+  I+ +  +G  L
Sbjct: 320 PLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFV-SGDRL 378

Query: 407 EALA---------LYDKLLQENLKP 422
              +         + D+L Q   KP
Sbjct: 379 HPRSKEIYRVLEEMMDRLKQAGYKP 403


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/636 (32%), Positives = 343/636 (53%), Gaps = 34/636 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+ A+ R  S+ D  A F ++  ++  SY   +  +      ++ALQ+F +   +  +
Sbjct: 21  NCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKKSINEELQ 80

Query: 154 PTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
               T+V+ L +CA L +  L  GK+IH   +    G ++ V+N+L  MYAK G    A 
Sbjct: 81  QNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKCGSFKFAA 140

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            +F++M  +NL+S+  MI  Y    +  +  +L+++M   G+ PD    +  L  C    
Sbjct: 141 GVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIR 200

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + GRI  A  +F  I+ KD   +  MI  + +
Sbjct: 201 EGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAK 260

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
                 A+ L+ EM   ++ P+ ++ +SV+ +C+KL +L  G+ +H K        D+  
Sbjct: 261 YDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAY 320

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
           ++AL++MY KCG T +A  VFN    +NV +W S+++ Y+Q GQ    L  Y ++  E +
Sbjct: 321 NTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGV 380

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            PD  TF ++ +AC H+ L + G  +F ++   H I P   HY CMI+LLGR   + +A 
Sbjct: 381 IPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAE 440

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +L++++P+ P+ + W+ LLS C + GD+K G  A + + EL P ++GPY+++ NMYA  G
Sbjct: 441 ELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMGNMYAKAG 500

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           +W DVA ++  +K + + K    S IE   ++H+FV  D  HP  + I   L ++ ++L 
Sbjct: 501 KWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDTAHPLNQEIRARLQEVHEQLS 560

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
            AG+ P+TK VL D  EE K + + +HSE++AL   L+    G T + I+KN+R+C DCH
Sbjct: 561 HAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTSDAGAT-LHIVKNLRICPDCH 619

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            F K  S ++ R +++RDS+RFH F  G+CSC D W
Sbjct: 620 SFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 196/410 (47%), Gaps = 29/410 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  N+L+  +A+ GS +    +F+KM  ++ +SY + I  + +     EA +++ +M 
Sbjct: 119 DLVVQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKML 178

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV-RNALTDMYAKGGEI 207
            +   P  Y + +AL  C     +R G+ IH K+  GN      V  NAL  MY + G I
Sbjct: 179 SEGIMPDIYAYAAALAVCPT---IREGEAIHVKL--GNHERRTPVCSNALVGMYGRFGRI 233

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A+W+FD +  ++L S+N MI+ + K     K I L+ EM+   L P+  T +++L AC
Sbjct: 234 ASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDAC 293

Query: 268 FQTGRIDDAGRLFHVIKEKD---NVCWTTMIVG-YTQNGKEEDALILFNEMLSEDVRPDK 323
            + G + +   +   +K  D   +V + T +V  Y + G   +A  +FN+   ++V    
Sbjct: 294 SKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNV---- 349

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F+ +S++S+ ++     +    + +    GV  D +  +A+ +     G+ D+    F  
Sbjct: 350 FTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRA 409

Query: 384 MPTRNVV-----SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHA 437
           M   + +      +  MI+   + G+  EA  L   +      PD  T+  +LSAC ++ 
Sbjct: 410 MREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTM---PYSPDVVTWTILLSACKVYG 466

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLL---GRSSDVDKAVDLIK 484
           DL + G   +  I+ ++   P    Y  M N+    G+ +DV +   +IK
Sbjct: 467 DL-KIGARAYKRITELN--PPDSGPYLLMGNMYAKAGKWADVAEVKKMIK 513



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 51/374 (13%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           AY   +  C  + + E       H+ L  +E  T    N L+  Y + G++  A+ +FD 
Sbjct: 188 AYAAALAVCPTIREGEAI-----HVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVFDG 242

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           +  +D+ S+N +                               IA FA      +A+ ++
Sbjct: 243 IRYKDLASYNNM-------------------------------IAVFAKYDDGSKAISLY 271

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
             M+    EP  +T  S L+AC++L  L  GK+IH K+  G+   +V    AL +MYAK 
Sbjct: 272 IEMEGRNLEPNLWTFTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKC 331

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G   +AR +F+    +N+ +W  ++S Y + GQ +  ++ +Q M   G+ PD+VT + I 
Sbjct: 332 GSTHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIF 391

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC  +G  D+    F  ++E   +      +T MI    + G+  +A  L   M     
Sbjct: 392 NACSHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTM---PY 448

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDD 376
            PD  + + ++S+C     L  G   + +   L   D    LL+     +MY K G   D
Sbjct: 449 SPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMG----NMYAKAGKWAD 504

Query: 377 AWTVFNMMPTRNVV 390
              V  M+  R + 
Sbjct: 505 VAEVKKMIKQRGLA 518



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 98/245 (40%), Gaps = 41/245 (16%)

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           + +  + + L+  Y +C   DDA   F+ +  +N  S+  M+  Y +N    +AL L+ K
Sbjct: 14  EKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQENDLHKKALQLFKK 73

Query: 415 LLQENLKPDSFTFVSVLSACLH--ADLFERGQN-HFDSISAVHG----ITPSLDH----- 462
            + E L+ +  T+V+VL +C H   D  E G+  H  +I+   G    +  SL H     
Sbjct: 74  SINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVVQNSLIHMYAKC 133

Query: 463 --------------------YACMINLLGRSSDVDKAVDLIKSLPHK---PNSLIWSTLL 499
                               Y  MI     ++   +A +L K +  +   P+   ++  L
Sbjct: 134 GSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAAL 193

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           +VC     I+ GE     L   E         L  MY   GR+  +AS +        K 
Sbjct: 194 AVCPT---IREGEAIHVKLGNHERRTPVCSNALVGMY---GRFGRIASAKWVFDGIRYKD 247

Query: 560 FAAYS 564
            A+Y+
Sbjct: 248 LASYN 252


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 365/683 (53%), Gaps = 54/683 (7%)

Query: 65  LLHFYAKSGKLFYARDLFDKM----PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LLH   ++G L  AR L   M       D+    +L++A+ R G+ QD R+LFD+MP ++
Sbjct: 84  LLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKN 143

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++   I G+       EAL+VF  M +    P+ YT  + LNAC+   +   G Q+HG
Sbjct: 144 VVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHG 203

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
             +         + N+L  MYAK G ++ A   F  + ++N+++W  MIS   ++    +
Sbjct: 204 YTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTE 263

Query: 241 C-IDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
             + LF +M + G+ P+E T+++++  C                                
Sbjct: 264 LGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTM 323

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ---NGKEE--------DALILFNE 313
               + G  D+A R F  + +   + W  MI GY Q     K++         AL +F  
Sbjct: 324 YLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRN 383

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           +    ++PD F+ SS++S C+ + +L  G+ +H + +  G   D++V+SAL++MY KCG 
Sbjct: 384 LKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGC 443

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            +DA   F  M  R +V+W SMI+GY+Q+G+  EA+ L++ +    ++P+  TFV VLSA
Sbjct: 444 IEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSA 503

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C +A L E+ +++FD +   + I P +DHY CM+++  R   +D A   I+    +PN  
Sbjct: 504 CSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEA 563

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IWS+L++ C   G+++    AA  L EL P     Y++L NMY +  RW DVA +R  MK
Sbjct: 564 IWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERWHDVARVRKLMK 623

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + +      SWI I +KV+ F + D+TH  ++ +Y+ L  L++K +  G+ P     L 
Sbjct: 624 QEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTIGYEPYQSAELS 683

Query: 614 DTQEEEK--VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
           D+++++K    S+ +HSE+LA+A  L++ P G T +R+ KNI +C DCH  +KF S +  
Sbjct: 684 DSEDDKKPPAGSVRHHSERLAVALGLLQTPPGAT-VRVTKNITMCRDCHSSIKFFSLLAN 742

Query: 672 RTIILRDSNRFHHFVGGNCSCKD 694
           R I++RDS R H F  G CSC D
Sbjct: 743 REIVVRDSKRLHKFKDGRCSCGD 765


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 336/600 (56%), Gaps = 63/600 (10%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGS-VQDLRALFDKMPI 118
           F  N+++    +SG +  A  +F  M  ++ +SWN+LL   ++  S + +   LFD++P 
Sbjct: 62  FPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFDEIPE 121

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
            D+ SYN  ++ +   G   +A   F+RM         +   ++ N              
Sbjct: 122 PDTFSYNIMLSCYVRNGNFEKAQSFFNRM--------PFKDAASWNT------------- 160

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
              ++ G               YA+ GE++KAR LF  M  +N VSWN MISGY++ G  
Sbjct: 161 ---MITG---------------YARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDL 202

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN-VCWTTMIVG 297
           +K    F+     G+    V  + ++    +  +++ A  +F  +  K N V W  MI G
Sbjct: 203 EKAAHFFKAAPFRGV----VAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISG 258

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y +N + ED L LF  ML E +RP+   +SS +  C++L++L  G+ +H           
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQ---------- 308

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
                  I MYCKCG   DAW +F  M  ++VV+WN+MI+GYAQ+G   +AL L+ ++  
Sbjct: 309 -------IVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRD 361

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
              KPD  TFV+VL AC HA L + G  +FDS+   + + P  DHY CM++LLGR+  V+
Sbjct: 362 SKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVE 421

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A+ LI+S+P +P++ ++ TLL  C +  +++  E AA  L EL+P NA  Y+ L+N+YA
Sbjct: 422 EALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLELDPRNAAGYVQLANIYA 481

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           +   WEDVA +R  MK  NV K   YSWIEI NK+H F S DR HPE + I+++L +L +
Sbjct: 482 SKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSDRIHPELDSIHKKLKELER 541

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           K++ AG+ P  +  LH+ +EE+K K + +HSEKLA+A+  IK P G +PI++ KN+R+C 
Sbjct: 542 KMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQG-SPIQVFKNLRICA 600



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 169/356 (47%), Gaps = 38/356 (10%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           NT   ++ L+       ++  A  LFD++P  D  S+N +LS + R+G+ +  ++ F++M
Sbjct: 91  NTVSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRM 150

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           P +D+ S+NT I G+A +G   +A  +F S M+K+  E +    +S    C  L      
Sbjct: 151 PFKDAASWNTMITGYARRGEMEKARVLFYSMMEKN--EVSWNAMISGYIECGDL-----E 203

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLK 234
           K  H        G  V    A+   Y K  +++ A  +F  M   +NLV+WN MISGY++
Sbjct: 204 KAAHFFKAAPFRG--VVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVE 261

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ------------------TGRIDDA 276
           N +P+  + LF+ M   G+ P+   +S+ L  C +                   G + DA
Sbjct: 262 NSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDA 321

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC--- 333
            +LF  +K+KD V W  MI GY Q+G  E AL LF+EM     +PD  +  +V+ +C   
Sbjct: 322 WKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHA 381

Query: 334 --AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
               +   Y   +V    V    D      + ++D+  + G  ++A  +   MP R
Sbjct: 382 GLVDIGMTYFDSMVRDYRVEPRPDH----YTCMVDLLGRAGKVEEALKLIRSMPFR 433



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 116/255 (45%), Gaps = 29/255 (11%)

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN-GQDLEALALYD 413
           +D +   + +I    + G  D A +VF+ M  +N VSWNS++ G +++  + +EA  L+D
Sbjct: 58  EDQIFPLNKIIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISKDPSRMMEAHQLFD 117

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++ +    PD+F++  +LS  +    FE+ Q+ F+ +      +     +  MI    R 
Sbjct: 118 EIPE----PDTFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAAS-----WNTMITGYARR 168

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            +++KA  L  S+  K N + W+ ++S     GD++     A H F+  P      +  +
Sbjct: 169 GEMEKARVLFYSMMEK-NEVSWNAMISGYIECGDLEK----AAHFFKAAPFRG--VVAWT 221

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
            M     + + V    +  K   VKK    + +  +  +  +V   R  PE  +      
Sbjct: 222 AMITGYMKAKKVELAEAMFKDMTVKK----NLVTWNAMISGYVENSR--PEDGL------ 269

Query: 594 KLIKKLQEAGFSPNT 608
           KL + + E G  PN+
Sbjct: 270 KLFRAMLEEGIRPNS 284


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/661 (34%), Positives = 364/661 (55%), Gaps = 65/661 (9%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRAL----FDKMPIRDSVSYNTAIAGFANKG- 135
           +F++   R  + WN+++S      S+   R+      D +P +    +NT      NKG 
Sbjct: 54  VFNQQLTRLAVPWNSIVSPVRCGTSISHNRSFAFRHTDLIP-KQFKRFNT------NKGC 106

Query: 136 -FSREALQ---VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
              REA Q   V+S +Q   F  +  T VS  +A            IH +++      + 
Sbjct: 107 CIFREASQFIVVYSIVQSLVFAISSCTSVSYCSA------------IHARVIKSLNYSDG 154

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL- 250
           F+ + L  MY K G  + A+ LFD M N++LVSWN ++SG    G    C++ F  M+  
Sbjct: 155 FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTE 214

Query: 251 LGLNPDEVTVSNILGACFQTGRIDD----------------------------------- 275
            G  P+EVT+ +++ AC   G +D+                                   
Sbjct: 215 SGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 274

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A +LF  +  +  V W +M+V +  NG  E  + LFN M    + PD+ ++ +++ +C  
Sbjct: 275 ASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTD 334

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
                  + +H      G + D+++++AL+++Y K G  + +  +F  +  R+ ++W +M
Sbjct: 335 TGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAM 394

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           + GYA +    EA+ L+D +++E ++ D  TF  +LSAC H+ L E G+ +F+ +S V+ 
Sbjct: 395 LAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYR 454

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           + P LDHY+CM++LLGRS  ++ A +LIKS+P +P+S +W  LL  C + G+++ G+  A
Sbjct: 455 VEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVA 514

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
             L  L+P +   YIMLSN+Y+A G W D + +R+ MK + + +    S+IE  NK+H+F
Sbjct: 515 EQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRF 574

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           V  D+ HP ++ I+ +L +LI+K++EAG +P T+ VLHD  EE KV  I  HSEKLA+A+
Sbjct: 575 VVGDQLHPRSDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAF 634

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
            L+    GV P+ I KN+R+CGDCH   KFAS +  RTII+RDS RFHHF  G CSC+D 
Sbjct: 635 GLLVTGSGV-PLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDY 693

Query: 696 W 696
           W
Sbjct: 694 W 694



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 173/368 (47%), Gaps = 78/368 (21%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ +RL+  Y K G    A+ LFD+MP +D++SWN+L+S                     
Sbjct: 155 FIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMS--------------------- 193

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQI 178
                     G + +G+    L  F RM+ +   +P + T +S ++ACA +  L  GK +
Sbjct: 194 ----------GLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG +V   + G   V N+L +MY K G +D A  LF+ M  R+LVSWN M+  +  NG  
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---------------------------- 270
           +K +DLF  M+  G+NPD+ T+  +L AC  T                            
Sbjct: 304 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 363

Query: 271 -------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  GR++ +  +F  IK++D + WT M+ GY  +    +A+ LF+ M+ E V  D 
Sbjct: 364 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 423

Query: 324 FSISSVVSSCAKLASLYHGQVVHGK------AVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + + ++S+C+     + G V  GK      + V  V+  L   S ++D+  + G  +DA
Sbjct: 424 VTFTHLLSACS-----HSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDA 478

Query: 378 WTVFNMMP 385
           + +   MP
Sbjct: 479 YELIKSMP 486


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/604 (36%), Positives = 332/604 (54%), Gaps = 38/604 (6%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFE 153
           AL+SA+A+S  + D   LFD+ P RD   Y++ +   ++      AL +   M   D   
Sbjct: 43  ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 102

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   S  +  A+L   R G+Q+H   VV    G+  V+++L DMY K G  D  R +
Sbjct: 103 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 162

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M+ +N V W  ++SGY  NG+ ++ + LF+ M                      GR 
Sbjct: 163 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM---------------------PGR- 200

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSS 332
                LF          WT +I G    G+   A+ LF EM  + VR  D F +S V+  
Sbjct: 201 ----NLF---------AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGG 247

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
            A LA+   G+ +HG  + LG   +++V +ALIDMY KC     A  VF  +  R+V+SW
Sbjct: 248 SADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISW 307

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            +M+ G AQ+G+  EALALYD+++    KP+  TFV ++ AC HA L ++G+  F+S+  
Sbjct: 308 TTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKN 367

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +GITP L HY C ++LL RS  + +A +L+ ++P++P+   W  LLS C    D +   
Sbjct: 368 EYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCI 427

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
             +  L EL P ++  YI+LSN+YA  G+W+ VA +R  M    ++K   YSWIE   + 
Sbjct: 428 RISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREF 487

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
             F + +      E I   L +++ ++++ G+ P+T  V+HD +E EK   +  HSE+LA
Sbjct: 488 RLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLA 547

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +A+ LIK P G + IR++KN+RVC DCH  MK  S+I  R I++RDS+RFHHF GG CSC
Sbjct: 548 VAFGLIKSPPG-SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSC 606

Query: 693 KDNW 696
            + W
Sbjct: 607 SEFW 610



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 155/308 (50%), Gaps = 10/308 (3%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
            R+    L ++L +H  ++ Y  +   + + L+  Y K G     R +FD M  ++ + W
Sbjct: 116 ARLRSRRLGRQLHAHFVVSPYNGDDV-VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVW 174

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+S +A +G  ++   LF  MP R+  ++   I+G  N G S  A+++F  M++D   
Sbjct: 175 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 234

Query: 154 PTDYTHVS-ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
             D   +S  +   A L     G+Q+HG  +      N+ V NAL DMY+K  +I  AR 
Sbjct: 235 IDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSARE 294

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ +  R+++SW  M+ G  ++G+ ++ + L+  M L G  P+EVT   ++ AC   G 
Sbjct: 295 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGL 354

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +    +LF  +K +  +      +T  +   +++G   +A  L   M  E   PD+ +  
Sbjct: 355 VQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE---PDEATWG 411

Query: 328 SVVSSCAK 335
           +++S+C K
Sbjct: 412 ALLSACTK 419



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-L 420
           +AL+  Y K  +  DA  +F+  P R++  ++S++   + +     AL +   +L  + L
Sbjct: 42  AALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADAL 101

Query: 421 KPDSFTFVSVLS--ACLHADLFERGQNHFDSISAVHG---ITPSLDHYACMINLLGRSSD 475
            PD F   SV S  A L +    R  +    +S  +G   +  SL    C     G   D
Sbjct: 102 HPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC---GSPDD 158

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAG 527
             K  D + +     NS++W+ L+S  A  G  +        M  R+LF    + +G
Sbjct: 159 GRKVFDSMSA----KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISG 211


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/542 (36%), Positives = 317/542 (58%), Gaps = 36/542 (6%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           N+   N L + + + G++D A  +FD M  RN+ +WN M+SG ++    +  + LF+EM 
Sbjct: 22  NIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMH 81

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
            LG  PDE T+ ++L  C                                    ++G + 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +  ++   ++ ++ V W T+I G  QNG  E  L L+N M    +RPDK ++ SV+SS A
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSA 201

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           +LA+L+ GQ +H +A+  G +  + V S+LI MY KCG  +D+          + V W+S
Sbjct: 202 ELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSS 261

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI  Y  +G+  EA+ L++++ QE L  +  TF+S+L AC H  L E+G   F  +   +
Sbjct: 262 MIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKY 321

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G+ P L+HY C+++LLGRS  +D+A  +I+S+P + + +IW TLLS C +  +       
Sbjct: 322 GLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRT 381

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  +  L P ++  Y++LSN++A+  RW+DV+ +R++M+ +NVKK    SW+E+ N+V +
Sbjct: 382 AEEILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQ 441

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F   D++HP +E I   L +L+++++  G+ P+T  V HDT  EEK  S+  HSEKLA+A
Sbjct: 442 FSMGDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIA 501

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           + L+  P G +PIR+MKN+R+C DCH+ +K  SDI  R II+RD++RFHHF  G CSC D
Sbjct: 502 FGLMNIPPG-SPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGD 560

Query: 695 NW 696
            W
Sbjct: 561 YW 562



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 165/342 (48%), Gaps = 46/342 (13%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K GEI +A   F+ M  RN++S N++I+G++                          
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHV-------------------------- 34

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                    Q G +D A ++F  + E++   W  M+ G  Q    E+ L LF EM     
Sbjct: 35  ---------QHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGF 85

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD+F++ SV+  CA L + Y G+ VH   +  G + +L+V S+L  MY K G   +   
Sbjct: 86  LPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-AD 438
           V   M  RNVV+WN++I G AQNG     L LY+ +    L+PD  T VSV+S+    A 
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELAT 205

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           LF+  Q H ++I A  G   ++   + +I++  +   ++ ++  +    H P+S++WS++
Sbjct: 206 LFQGQQIHAEAIKA--GANSAVAVLSSLISMYSKCGCLEDSMKALLDCEH-PDSVLWSSM 262

Query: 499 LSVCAMKGDIKHGEMAARHLF---ELEPINAGPYIMLSNMYA 537
           ++     G    GE A  HLF   E E +       LS +YA
Sbjct: 263 IAAYGFHG---RGEEAV-HLFEQMEQEGLGGNDVTFLSLLYA 300



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 173/368 (47%), Gaps = 37/368 (10%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y K G++  A   F+ MP+R+I+S N L++ H + G +     +FD+M  R+  ++N  
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           ++G     F+   L +F  M +  F P ++T  S L  CA L     GKQ+H  ++    
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGY 120

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             N+ V ++L  MY K G + +   +   M  RN+V+WN +I+G  +NG  +  +DL+  
Sbjct: 121 EFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNM 180

Query: 248 MQLLGLNPDEVTVSNI------LGACFQ-----------------------------TGR 272
           M++ GL PD++T+ ++      L   FQ                              G 
Sbjct: 181 MKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGC 240

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           ++D+ +     +  D+V W++MI  Y  +G+ E+A+ LF +M  E +  +  +  S++ +
Sbjct: 241 LEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYA 300

Query: 333 CAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVV 390
           C+       G       V   G+   L   + ++D+  + G  D+A  +   MP   +VV
Sbjct: 301 CSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVV 360

Query: 391 SWNSMING 398
            W ++++ 
Sbjct: 361 IWKTLLSA 368



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 111/234 (47%), Gaps = 34/234 (14%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           YE N   + + L H Y KSG L     +   M +R++++WN L++ +A++G  + +    
Sbjct: 120 YEFNLV-VGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGV---- 174

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
                                      L +++ M+     P   T VS +++ A+L  L 
Sbjct: 175 ---------------------------LDLYNMMKMSGLRPDKITLVSVISSSAELATLF 207

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI-DKARWLFDRMNNRNLVSWNLMISGY 232
           +G+QIH + +       V V ++L  MY+K G + D  + L D   + + V W+ MI+ Y
Sbjct: 208 QGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLD-CEHPDSVLWSSMIAAY 266

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
             +G+ ++ + LF++M+  GL  ++VT  ++L AC   G  +     F ++ EK
Sbjct: 267 GFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEK 320


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/549 (37%), Positives = 330/549 (60%), Gaps = 40/549 (7%)

Query: 158 THVSALNACAQLLDLRR----GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           THVS L    Q     R    G   H +I+   L  +    N L +MY+K G ++ AR L
Sbjct: 45  THVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKL 104

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M  R+LVSWN M+  + +NG  +K + LF +MQ  G++  E TVS+++ AC      
Sbjct: 105 FDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCV 164

Query: 269 ------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + DA  +F  + E+ +V W++M+ GY
Sbjct: 165 FECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGY 224

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN   E+AL+LF+   +  +  ++F+ISS +S+CA  A+L  G+ V       G+  ++
Sbjct: 225 VQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNI 284

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+LIDMY KCG+ ++A+ VF+ +  +NVV WN+M++G++++ + LEA+  ++K+ Q 
Sbjct: 285 FVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQM 344

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  T++SVL+AC H  L E+G+ +FD +  VH ++P++ HY+CM+++LGR+  + +
Sbjct: 345 GICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHE 404

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A DLI  +P    + +W +LL+ C +  +++  E+AA+HLFE+EP NAG +++LSN+YAA
Sbjct: 405 AKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAA 464

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RWE+VA  R+ +K    KK    SWIEI +KVH F+  +R HP    IY +L  L+ +
Sbjct: 465 NNRWEEVARARNLLKESKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGE 524

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           +++ G+   T+  LHD +E  K + + +HSEKLAL + ++  PHG  PIRIMKN+R+CGD
Sbjct: 525 MKKIGYKAKTEHDLHDVEESRKQELLRHHSEKLALTFGIMVLPHG-APIRIMKNLRICGD 583

Query: 659 CHLFMKFAS 667
           CH FMK AS
Sbjct: 584 CHSFMKLAS 592



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 177/345 (51%), Gaps = 37/345 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D I+ N L++ +++ G V+  R LFD+MP+R  VS+NT +      G S +AL +F +MQ
Sbjct: 81  DTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQ 140

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           K+    +++T  S + ACA    +   KQ+HG  +   L  NVFV  AL D+YAK G + 
Sbjct: 141 KEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVK 200

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
            A  +F+ M  R+ V+W+ M++GY++N   ++ + LF   Q +GL  ++ T         
Sbjct: 201 DASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACA 260

Query: 260 --------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                     +S+++    + G I++A  +F  ++EK+ V W  
Sbjct: 261 ARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNA 320

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV-VL 352
           M+ G++++ +  +A+I F +M    + P++ +  SV+++C+ L  +  G+      + V 
Sbjct: 321 MLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVH 380

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMI 396
            V  ++L  S ++D+  + G+  +A  + + MP     S W S++
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLL 425


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/604 (36%), Positives = 332/604 (54%), Gaps = 38/604 (6%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFE 153
           AL+SA+A+S  + D   LFD+ P RD   Y++ +   ++      AL +   M   D   
Sbjct: 125 ALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADALH 184

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   S  +  A+L   R G+Q+H   VV    G+  V+++L DMY K G  D  R +
Sbjct: 185 PDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKV 244

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M+ +N V W  ++SGY  NG+ ++ + LF+ M                      GR 
Sbjct: 245 FDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSM---------------------PGR- 282

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSS 332
                LF          WT +I G    G+   A+ LF EM  + VR  D F +S V+  
Sbjct: 283 ----NLF---------AWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGG 329

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
            A LA+   G+ +HG  + LG   +++V +ALIDMY KC     A  VF  +  R+V+SW
Sbjct: 330 SADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISW 389

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            +M+ G AQ+G+  EALALYD+++    KP+  TFV ++ AC HA L ++G+  F+S+  
Sbjct: 390 TTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKN 449

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +GITP L HY C ++LL RS  + +A +L+ ++P++P+   W  LLS C    D +   
Sbjct: 450 EYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCI 509

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
             +  L EL P ++  YI+LSN+YA  G+W+ VA +R  M    ++K   YSWIE   + 
Sbjct: 510 RISDKLLELRPKDSSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREF 569

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
             F + +      E I   L +++ ++++ G+ P+T  V+HD +E EK   +  HSE+LA
Sbjct: 570 RLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLA 629

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +A+ LIK P G + IR++KN+RVC DCH  MK  S+I  R I++RDS+RFHHF GG CSC
Sbjct: 630 VAFGLIKSPPG-SVIRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSC 688

Query: 693 KDNW 696
            + W
Sbjct: 689 SEFW 692



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 155/308 (50%), Gaps = 10/308 (3%)

Query: 34  TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
            R+    L ++L +H  ++ Y  +   + + L+  Y K G     R +FD M  ++ + W
Sbjct: 198 ARLRSRRLGRQLHAHFVVSPYNGDDV-VKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVW 256

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL+S +A +G  ++   LF  MP R+  ++   I+G  N G S  A+++F  M++D   
Sbjct: 257 TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 316

Query: 154 PTDYTHVS-ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
             D   +S  +   A L     G+Q+HG  +      N+ V NAL DMY+K  +I  AR 
Sbjct: 317 IDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSARE 376

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F+ +  R+++SW  M+ G  ++G+ ++ + L+  M L G  P+EVT   ++ AC   G 
Sbjct: 377 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGL 436

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +    +LF  +K +  +      +T  +   +++G   +A  L   M  E   PD+ +  
Sbjct: 437 VQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTMPYE---PDEATWG 493

Query: 328 SVVSSCAK 335
           +++S+C K
Sbjct: 494 ALLSACTK 501



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-L 420
           +AL+  Y K  +  DA  +F+  P R++  ++S++   + +     AL +   +L  + L
Sbjct: 124 AALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSASPELALPILRCMLSADAL 183

Query: 421 KPDSFTFVSVLS--ACLHADLFERGQNHFDSISAVHG---ITPSLDHYACMINLLGRSSD 475
            PD F   SV S  A L +    R  +    +S  +G   +  SL    C     G   D
Sbjct: 184 HPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDDVVKSSLVDMYCKC---GSPDD 240

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAG 527
             K  D + +     NS++W+ L+S  A  G  +        M  R+LF    + +G
Sbjct: 241 GRKVFDSMSA----KNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISG 293


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 326/571 (57%), Gaps = 37/571 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           +A+ AC +   L  G+Q+H  +V       V++   L  +Y + G +D AR + D M  R
Sbjct: 46  AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPER 105

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------- 267
           N+VSW  MISGY ++G+  + ++LF  M   G   +E T++ +L +C             
Sbjct: 106 NVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVH 165

Query: 268 ----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
                                  ++G I +A ++F ++ E+D V  T +I GY Q G ++
Sbjct: 166 SLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDD 225

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL LF ++ S  ++ +  + +++++S + LASL +G+ VHG  +   +   +++ ++LI
Sbjct: 226 EALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLI 285

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           DMY KCG    +  VF+ MP R+ +SWN+M+ GY ++G   E + L+ + + E +KPDS 
Sbjct: 286 DMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLF-RTMTEEVKPDSV 344

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
           T ++VLS C H  L + G + FD I         + HY C+I+LLGRS  + KA+DLI+ 
Sbjct: 345 TLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEH 404

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P +P   IW +LL  C +  ++  GE+ A+ L ++EP NAG Y++LSN+YAA G W+DV
Sbjct: 405 MPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDV 464

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
             +R  M    V K  A SWI +D  +H F S +R HP  + I  ++ ++   ++ AGF 
Sbjct: 465 FRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFV 524

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VLHD  +E+K + +  HSEKLA+ + L+  P G+T I++MKN+R+C DCH F KF
Sbjct: 525 PDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLT-IQVMKNLRICVDCHNFAKF 583

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S + GR I LRD NRFH    G C+C D W
Sbjct: 584 VSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 187/439 (42%), Gaps = 92/439 (20%)

Query: 8   RQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLH 67
           R A  +L   G  A    Y   +  C     +   +++ +HM    Y P   +L  RL+ 
Sbjct: 26  RHAASSLAVPGADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRP-PVYLATRLII 84

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y                                R G++ D R + D MP R+ VS+   
Sbjct: 85  LYV-------------------------------RCGALDDARNVLDGMPERNVVSWTAM 113

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           I+G++  G   EAL++F RM +   +  ++T  + L +C     +++ +Q+H  +V  N 
Sbjct: 114 ISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNF 173

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             ++FV ++L DMY K G I +AR +FD +  R+ VS   +ISGY + G   + +DLF++
Sbjct: 174 ESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQ 233

Query: 248 MQLLGLNPDEVTVSNILGAC-----------------------------------FQTGR 272
           +   G+  + VT + +L +                                     + G+
Sbjct: 234 LYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGK 293

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +  + R+F  + ++  + W  M++GY ++G  ++ + LF  M +E+V+PD  ++ +V+S 
Sbjct: 294 LLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTM-TEEVKPDSVTLLAVLSG 352

Query: 333 CAKLASLYHGQVVHGKAVVLGVDD-DLLVS-----------SALIDMYCKCGVTDDAWTV 380
           C+           HG  V  G+D  DL+V              +ID+  + G    A  +
Sbjct: 353 CS-----------HGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDL 401

Query: 381 FNMMPTRNVVS-WNSMING 398
              MP     + W S++  
Sbjct: 402 IEHMPFEPTPAIWGSLLGA 420



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 156/298 (52%), Gaps = 14/298 (4%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++LL  + +SG++Q+ R +FD +P RD+VS    I+G+A  G   EAL +F ++     +
Sbjct: 181 SSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQ 240

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  + L + + L  L  GKQ+HG I+   L   + ++N+L DMY+K G++  +R +
Sbjct: 241 CNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRV 300

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R+ +SWN M+ GY ++G  ++ + LF+ M    + PD VT+  +L  C   G +
Sbjct: 301 FDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMT-EEVKPDSVTLLAVLSGCSHGGLV 359

Query: 274 DDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+   +F +I ++ N       +  +I    ++G+ + AL L   M  E   P      S
Sbjct: 360 DEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFE---PTPAIWGS 416

Query: 329 VVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ +C    ++  G+VV  K + +  G   + ++ S   ++Y   G+  D + V  +M
Sbjct: 417 LLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILS---NIYAAAGMWKDVFRVRKLM 471


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 336/590 (56%), Gaps = 8/590 (1%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQ 168
           R L    P  D+  +NT + G++       ++ VF  M +  F  P  ++    + A   
Sbjct: 51  RRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVEN 110

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              LR G Q+H + +   L  ++FV   L  MY   G ++ AR +FD M+  NLV+WN +
Sbjct: 111 FRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 170

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           I+   +        ++F +M    L  +  + + +L    + G ++ A R+F  +  +D+
Sbjct: 171 ITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDD 226

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W+TMIVG   NG   ++ + F E+    + P++ S++ V+S+C++  S   G+++HG 
Sbjct: 227 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 286

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQDLE 407
               G    + V++ALIDMY +CG    A  VF  M   R +VSW SMI G A +GQ  E
Sbjct: 287 VEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEE 346

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ L++++    + PD  +F+S+L AC HA L E G+++F  +  V+ I P ++HY CM+
Sbjct: 347 AVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMV 406

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L GRS  + KA D I  +P  P +++W TLL  C+  G+I+  E   + L EL+P N+G
Sbjct: 407 DLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSG 466

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
             ++LSN YA  G+W+DVASIR SM  + +KK  A+S +E+   ++KF + ++       
Sbjct: 467 DLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIE 526

Query: 588 IYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
            +E+L ++I +L+ EAG++P     L+D +EEEK   +  HSEKLALA+ L +   G   
Sbjct: 527 AHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGAN- 585

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IRI+KN+R+C DCH  MK  S + G  I++RD NRFH F  G+CSC+D W
Sbjct: 586 IRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 161/314 (51%), Gaps = 23/314 (7%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           VE A+++   M    ++PN     N ++    +   +  AR++FDKM +R+  SWN +L+
Sbjct: 149 VEFARKVFDEM----HQPNLV-AWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 203

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
            + ++G ++  + +F +MP RD VS++T I G A+ G   E+   F  +Q+    P + +
Sbjct: 204 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 263

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L+AC+Q      GK +HG +        V V NAL DMY++ G +  AR +F+ M 
Sbjct: 264 LTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQ 323

Query: 219 N-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA- 276
             R +VSW  MI+G   +GQ ++ + LF EM   G+ PD ++  ++L AC   G I++  
Sbjct: 324 EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGE 383

Query: 277 ------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                  R++H+  E ++  +  M+  Y ++GK + A     +M    + P      +++
Sbjct: 384 DYFSEMKRVYHIEPEIEH--YGCMVDLYGRSGKLQKAYDFICQM---PIPPTAIVWRTLL 438

Query: 331 SSCAKLASLYHGQV 344
            +C+      HG +
Sbjct: 439 GACSS-----HGNI 447



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 20/273 (7%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCA 334
           A RL     E D   + T++ GY+++ +  +++ +F EM+ +  V PD FS + V+ +  
Sbjct: 50  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 109

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
              SL  G  +H +A+  G++  L V + LI MY  CG  + A  VF+ M   N+V+WN+
Sbjct: 110 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 169

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I    +      A  ++DK+L  N      ++  +L+  + A   E  +  F  +    
Sbjct: 170 VITACFRGNDVAGAREIFDKMLVRN----HTSWNVMLAGYIKAGELESAKRIFSEMPHRD 225

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
            ++     ++ MI  +  +   +++    + L      PN +  + +LS C+  G  + G
Sbjct: 226 DVS-----WSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG 280

Query: 512 EMAARHLFELEPINAGPYIMLSN----MYAACG 540
           ++   H F +E       + ++N    MY+ CG
Sbjct: 281 KIL--HGF-VEKAGYSWIVSVNNALIDMYSRCG 310


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 310/537 (57%), Gaps = 35/537 (6%)

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           F+ N L +MY K G +  A+ +FD+M +RN+VSW  MIS Y       K ++    M   
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 252 GLNPDEVTVSNILGAC--------------------------------FQTGRIDDAGRL 279
           G+ P+  T S++L AC                                 + G +++A R+
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
           F  +   D V W+++I G+ QN   ++AL LF  M        + +++SV+ +C  LA L
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ VH    VL  D DL++++AL+DMYCKCG  +DA  VF  M  ++V+SW++MI G 
Sbjct: 181 ELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGL 238

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           AQNG   EAL L++ +    +KP+  T V VL AC HA L E G  +F S+  + GI P 
Sbjct: 239 AQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPG 298

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
            +HY CMI+LLGR+  + +AVDLI  +  +P+++ W  LL+ C +  ++     AA+ + 
Sbjct: 299 REHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQIL 358

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
            L+P +AG Y++LSN+YA   RW DVA +R +M ++ +KK    SWIE+  ++H F+  D
Sbjct: 359 RLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGD 418

Query: 580 RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
           R+HP+   I  +L++LI KL   G+ P+T  VL D + E+   S+ YHSEKLA+ + L+ 
Sbjct: 419 RSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMS 478

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            P G T IRI KN+R+CGDCHLF K  + +  R I++RD  R+HHF  G CSC D W
Sbjct: 479 LPRGQT-IRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 169/340 (49%), Gaps = 38/340 (11%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L++ + + G + D + +FDKMP R+ VS+ T I+ ++    + +AL+    M ++   
Sbjct: 4   NILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVR 63

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T+ S L AC  L +LR   Q+H  I+   L  +VFVR+AL D+Y++ GE++ A  +
Sbjct: 64  PNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           FD M   +LV W+ +I+G+ +N    + + LF+ M+  G    + T++++L AC      
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 269 ----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G ++DA  +F  + EKD + W+TMI G  Q
Sbjct: 181 ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQ 240

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLL 359
           NG  ++AL LF  M    ++P+  +I  V+ +C+    +  G    H    + G+D    
Sbjct: 241 NGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGRE 300

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
               +ID+  + G   +A  + N M    + V+W +++N 
Sbjct: 301 HYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 139/250 (55%), Gaps = 10/250 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+  ++R G +++   +FD+M   D V +++ IAGFA      EAL++F RM+
Sbjct: 97  DVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMK 156

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  F     T  S L AC  L  L  G+Q+H  ++      ++ + NAL DMY K G ++
Sbjct: 157 RAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVL--KYDQDLILNNALLDMYCKCGSLE 214

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F RM  ++++SW+ MI+G  +NG  K+ + LF+ M++LG+ P+ VT+  +L AC 
Sbjct: 215 DANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS 274

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +++    FH +KE   +      +  MI    + G+  +A+ L NEM  E   PD 
Sbjct: 275 HAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECE---PDA 331

Query: 324 FSISSVVSSC 333
            +  +++++C
Sbjct: 332 VTWRALLNAC 341



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 33/180 (18%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  NALL  + + GS++D  A+F +M  +D +S++T IAG A  G+S+EAL++F  M
Sbjct: 195 QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESM 254

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +    +P   T V  L AC+           H  +V   L    +  +++ +++     I
Sbjct: 255 KVLGIKPNYVTIVGVLFACS-----------HAGLVEEGL----YYFHSMKELFG----I 295

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           D  R             +  MI    + G+  + +DL  EM+     PD VT   +L AC
Sbjct: 296 DPGR-----------EHYGCMIDLLGRAGRLSEAVDLINEME---CEPDAVTWRALLNAC 341


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 332/581 (57%), Gaps = 40/581 (6%)

Query: 119 RDS-VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL-DLRRGK 176
           RD+ V +N  I+G        EA   F  M +    PT  T+VS L+AC +   D+  G 
Sbjct: 106 RDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGM 165

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           Q+HG++V   +  ++ V NAL DMYA+  +++ A  LFD M  R++VSW  ++SG  +  
Sbjct: 166 QVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTR-- 223

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                             GR+D+A  LF  + E+D V WT MI 
Sbjct: 224 ---------------------------------LGRVDEARDLFGRMPERDTVSWTAMID 250

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           GY Q  +  +AL +F EM   +V  D+F++ SV+++CA+L +L  G+ V       G+  
Sbjct: 251 GYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKM 310

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D  V +ALIDMY KCG  + A  VF  M  R+  +W ++I G A NG   EA+ ++ +++
Sbjct: 311 DAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMI 370

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
             +  PD  TF+ VL+AC HA L ++G+  F S+   + I P++ HY C+I+L GR+  +
Sbjct: 371 GVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKI 430

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A+D I  +P  PNS IW TLL+ C + G+ + GE+    L +++P N+  Y +LSN+Y
Sbjct: 431 TEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIY 490

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A C RWEDV  +R ++  K +KK    S IE++  +H+FV+ D++HP ++ IY +L  +I
Sbjct: 491 AKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESII 550

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI-KKPHGVTPIRIMKNIRV 655
             L   G+ P+   V  +  EEEK K + +HSEKLA+A+ L+  +P+  T IRI+KN+R+
Sbjct: 551 NDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPN--TVIRIVKNLRM 608

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH  +K  S + GR +++RD  RFHHF  G CSCKD W
Sbjct: 609 CLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 182/365 (49%), Gaps = 11/365 (3%)

Query: 18  GQAATEEAYTQLVLDCTR-VNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           G A T   Y  ++  C +   DV L  ++   +  +   P+   + N L+  YA+   + 
Sbjct: 139 GAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLR-VENALVDMYAECADME 197

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A  LFD M +R ++SW +LLS   R G V + R LF +MP RD+VS+   I G+     
Sbjct: 198 SAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAAR 257

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
            REAL++F  MQ       ++T VS + ACAQL  L  G+ +   +    +  + FV NA
Sbjct: 258 FREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNA 317

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
           L DMY+K G I++A  +F  M++R+  +W  +I G   NG  ++ I++F  M  +   PD
Sbjct: 318 LIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPD 377

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG-----YTQNGKEEDALILF 311
           EVT   +L AC   G +D     F  ++E  N+    +  G     + + GK  +AL   
Sbjct: 378 EVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAI 437

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           ++M    + P+     +++++C    +   G++V  + + +  ++   V + L ++Y KC
Sbjct: 438 DQM---PMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENS-TVYTLLSNIYAKC 493

Query: 372 GVTDD 376
              +D
Sbjct: 494 NRWED 498



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 173/416 (41%), Gaps = 112/416 (26%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           + WNAL+S H R                               + F  EA   F  M + 
Sbjct: 110 VVWNALISGHNRC------------------------------RRFG-EACCSFVDMARA 138

Query: 151 RFEPTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA------- 202
              PT  T+VS L+AC +   D+  G Q+HG++V   +  ++ V NAL DMYA       
Sbjct: 139 GAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMES 198

Query: 203 ------------------------KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
                                   + G +D+AR LF RM  R+ VSW  MI GY++  + 
Sbjct: 199 AWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARF 258

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQ----------------------------- 269
           ++ +++F+EMQ   ++ DE T+ +++ AC Q                             
Sbjct: 259 REALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNAL 318

Query: 270 ------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                  G I+ A  +F  +  +D   WT +I+G   NG  E+A+ +F+ M+     PD+
Sbjct: 319 IDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDE 378

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------SALIDMYCKCGVTDDA 377
            +   V+++C      + G V  G+   L + +   ++        +ID++ + G   +A
Sbjct: 379 VTFIGVLTACT-----HAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEA 433

Query: 378 WTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
               + MP T N   W +++     +G       + ++LLQ  + P++ T  ++LS
Sbjct: 434 LDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQ--MDPENSTVYTLLS 487



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 113/256 (44%), Gaps = 10/256 (3%)

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           EDA+  +  ML+    PD ++   ++ + A+ +S    + VH   V  G+  +  V+++L
Sbjct: 25  EDAVAGYARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSL 84

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           +  Y   G    A  + +       V WN++I+G+ +  +  EA   +  + +    P  
Sbjct: 85  VTAYAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTP 144

Query: 425 FTFVSVLSACLH--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
            T+VSVLSAC     D+    Q H   + +  G+ P L     ++++    +D++ A  L
Sbjct: 145 VTYVSVLSACGKGTGDVLLGMQVHGRVVGS--GVLPDLRVENALVDMYAECADMESAWKL 202

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIMLSNMYAACGR 541
              +  + + + W++LLS     G +      AR LF   P  +   +  + + Y    R
Sbjct: 203 FDGMQVR-SVVSWTSLLSGLTRLGRVDE----ARDLFGRMPERDTVSWTAMIDGYVQAAR 257

Query: 542 WEDVASIRSSMKSKNV 557
           + +   +   M+  NV
Sbjct: 258 FREALEMFREMQCSNV 273


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 336/590 (56%), Gaps = 8/590 (1%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQ 168
           R L    P  D+  +NT + G++       ++ VF  M +  F  P  ++    + A   
Sbjct: 59  RRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVEN 118

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              LR G Q+H + +   L  ++FV   L  MY   G ++ AR +FD M+  NLV+WN +
Sbjct: 119 FRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAV 178

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           I+   +        ++F +M    L  +  + + +L    + G ++ A R+F  +  +D+
Sbjct: 179 ITACFRGNDVAGAREIFDKM----LVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDD 234

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W+TMIVG   NG   ++ + F E+    + P++ S++ V+S+C++  S   G+++HG 
Sbjct: 235 VSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGF 294

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQDLE 407
               G    + V++ALIDMY +CG    A  VF  M   R +VSW SMI G A +GQ  E
Sbjct: 295 VEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEE 354

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ L++++    + PD  +F+S+L AC HA L E G+++F  +  V+ I P ++HY CM+
Sbjct: 355 AVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMV 414

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L GRS  + KA D I  +P  P +++W TLL  C+  G+I+  E   + L EL+P N+G
Sbjct: 415 DLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSG 474

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
             ++LSN YA  G+W+DVASIR SM  + +KK  A+S +E+   ++KF + ++       
Sbjct: 475 DLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIE 534

Query: 588 IYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
            +E+L ++I +L+ EAG++P     L+D +EEEK   +  HSEKLALA+ L +   G   
Sbjct: 535 AHEKLKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGAN- 593

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IRI+KN+R+C DCH  MK  S + G  I++RD NRFH F  G+CSC+D W
Sbjct: 594 IRIVKNLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 158/304 (51%), Gaps = 18/304 (5%)

Query: 39  VELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLS 98
           VE A+++   M    ++PN     N ++    +   +  AR++FDKM +R+  SWN +L+
Sbjct: 157 VEFARKVFDEM----HQPNLVAW-NAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLA 211

Query: 99  AHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158
            + ++G ++  + +F +MP RD VS++T I G A+ G   E+   F  +Q+    P + +
Sbjct: 212 GYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVS 271

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
               L+AC+Q      GK +HG +        V V NAL DMY++ G +  AR +F+ M 
Sbjct: 272 LTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQ 331

Query: 219 N-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA- 276
             R +VSW  MI+G   +GQ ++ + LF EM   G+ PD ++  ++L AC   G I++  
Sbjct: 332 EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGE 391

Query: 277 ------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                  R++H+  E ++  +  M+  Y ++GK + A     +M    + P      +++
Sbjct: 392 DYFSEMKRVYHIEPEIEH--YGCMVDLYGRSGKLQKAYDFICQM---PIPPTAIVWRTLL 446

Query: 331 SSCA 334
            +C+
Sbjct: 447 GACS 450



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 128/273 (46%), Gaps = 20/273 (7%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCA 334
           A RL     E D   + T++ GY+++ +  +++ +F EM+ +  V PD FS + V+ +  
Sbjct: 58  ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVE 117

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
              SL  G  +H +A+  G++  L V + LI MY  CG  + A  VF+ M   N+V+WN+
Sbjct: 118 NFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNA 177

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +I    +      A  ++DK+L  N      ++  +L+  + A   E  +  F  +    
Sbjct: 178 VITACFRGNDVAGAREIFDKMLVRN----HTSWNVMLAGYIKAGELESAKRIFSEMPHRD 233

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHG 511
            ++     ++ MI  +  +   +++    + L      PN +  + +LS C+  G  + G
Sbjct: 234 DVS-----WSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFG 288

Query: 512 EMAARHLFELEPINAGPYIMLSN----MYAACG 540
           ++   H F +E       + ++N    MY+ CG
Sbjct: 289 KIL--HGF-VEKAGYSWIVSVNNALIDMYSRCG 318


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 324/591 (54%), Gaps = 37/591 (6%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           L     +      PT   + + + ACAQ  +L   ++IHG +      G+ F+ N+L  +
Sbjct: 36  LHDLDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHL 95

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G + +A  +FD+M  +++VSW  +I+GY +N  P + I L   M      P+  T 
Sbjct: 96  YCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTF 155

Query: 261 SNILGAC-----------------------------------FQTGRIDDAGRLFHVIKE 285
           +++L A                                     + G++D A  +F  +  
Sbjct: 156 ASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           K+ V W  +I G+ + G  E AL++F EM         F+ SS+ S  A + +L  G+ V
Sbjct: 216 KNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWV 275

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   V         V + ++DMY K G   DA  VF  +  +++V+WNSM+  +AQ G  
Sbjct: 276 HAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLG 335

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
            EA++ ++++ +  +  +  TF+ +L+AC H  L + G+++FD I   + + P ++HY  
Sbjct: 336 KEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIKE-YNLEPEIEHYVT 394

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           +++LLGR+  ++ A+  I  +P +P + +W  LL+ C M  + K G+ AA H+F+L+P +
Sbjct: 395 VVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
           +GP ++L N+YA+ G W+  A +R  MK+  VKK  A SW+EI N VH FV+ D THP  
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRA 514

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
           E IY+   ++  K+++ G+ P+   VL    E+E+  ++ YHSEK+ALA+ LI+ P G T
Sbjct: 515 EEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGAT 574

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            IRIMKNIR+CGDCH   K+ S +  R I++RD+NRFHHF  G+CSC D W
Sbjct: 575 -IRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/422 (24%), Positives = 185/422 (43%), Gaps = 68/422 (16%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D L S   A T   Y   +  C +  +++ A+++  H+  + +E +  FL N L+H Y 
Sbjct: 39  LDHLDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDA-FLDNSLIHLYC 97

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K G                               SV +   +FDKM  +D VS+ + IAG
Sbjct: 98  KCG-------------------------------SVVEAHKVFDKMRKKDMVSWTSLIAG 126

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           +A      EA+ +   M K RF+P  +T  S L A     D   G QIH   V  +   +
Sbjct: 127 YAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQIHALAVKCDWHED 186

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V+V +AL DMYA+ G++D A  +FD+++++N VSWN +ISG+ + G  +  + +F EMQ 
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 251 LGLNPDEVTVSNI------LGACFQ-----------------------------TGRIDD 275
            G      T S+I      +GA  Q                             +G + D
Sbjct: 247 NGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMID 306

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A ++F  +  KD V W +M+  + Q G  ++A+  F EM    +  ++ +   ++++C+ 
Sbjct: 307 ARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSH 366

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNS 394
              +  G+          ++ ++     ++D+  + G+ + A      MP     + W +
Sbjct: 367 GGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGA 426

Query: 395 MI 396
           ++
Sbjct: 427 LL 428



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 152/305 (49%), Gaps = 8/305 (2%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  +AR G +    A+FDK+  ++ VS+N  I+GFA KG    AL VF+ MQ
Sbjct: 186 DVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQ 245

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++ FE T +T+ S  +  A +  L +GK +H  +V        FV N + DMYAK G + 
Sbjct: 246 RNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMI 305

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +F+R+ N++LV+WN M++ + + G  K+ +  F+EM+  G+  +++T   IL AC 
Sbjct: 306 DARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACS 365

Query: 269 QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
             G + +    F +IK    E +   + T++    + G    AL+   +M  E   P   
Sbjct: 366 HGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPME---PTAA 422

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
              +++++C    +   GQ        L  DD       L ++Y   G  D A  V  MM
Sbjct: 423 VWGALLAACRMHKNAKVGQFAADHVFQLDPDDS-GPPVLLYNIYASTGHWDAAARVRKMM 481

Query: 385 PTRNV 389
               V
Sbjct: 482 KATGV 486


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/676 (33%), Positives = 359/676 (53%), Gaps = 78/676 (11%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMP--LRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           L+ +LL  YA +  L  A +LF+++P   +D ISWN+++ A            LFD+MP 
Sbjct: 90  LYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASIICNDFVTAVKLFDEMPQ 149

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           R+S+S+ T I GF + G   EA + F+ M                               
Sbjct: 150 RNSISWTTIIHGFLSTGRVNEAERFFNAMPY----------------------------- 180

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
                   +  +V   NA+ + Y   G ++ A  LF +M +R+++SW  +I G  +NG+ 
Sbjct: 181 --------VDKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKS 232

Query: 239 KKCIDLFQEMQ------------LLGLNP--------------------------DEVTV 260
            + +  F+ M             + GL+                           DE   
Sbjct: 233 YQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVS 292

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
           ++++       R+ DA ++F     K+ V WT ++ G   N K  +AL +F+EM+  +V 
Sbjct: 293 ASLVTFYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVV 352

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P++ S +S ++SC  L  L  G+V+H   + +G+++ +   ++L+ MY KCG   DA  V
Sbjct: 353 PNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCV 412

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  +  +NVVSWNS+I G AQ+G    AL L+ ++L+E ++ D  T   +LSAC  + + 
Sbjct: 413 FKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGML 472

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           ++ +  F   +    +  +++HYACM+++LGR  +V++A  L  S+P + NS++W  LLS
Sbjct: 473 QKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLS 532

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C +   +   E AA+ +FE+EP  +  Y++LSN+YA+  RW +VA IR  MK   + K 
Sbjct: 533 ACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQ 592

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              SWI +    H+F+S DR+HP TE IYE+L  L  KL+E G+ P+ +  LHD + E+ 
Sbjct: 593 PGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQN 652

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + + YHSE+LA+A+ L+    G T I IMKN+RVCGDCH  +   + I+ R I++RDS+
Sbjct: 653 EEMLSYHSERLAIAFGLLSTVEGST-ITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSS 711

Query: 681 RFHHFVGGNCSCKDNW 696
           RFHHF  G CSC D W
Sbjct: 712 RFHHFKNGICSCGDYW 727



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 187/447 (41%), Gaps = 87/447 (19%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           YT+L+L     N++  A  L + +  N      T   N ++           A  LFD+M
Sbjct: 91  YTKLLLAYAHNNNLHEAINLFNQIPSN---TKDTISWNSVIKASIICNDFVTAVKLFDEM 147

Query: 86  PLR---------------------------------DIISWNALLSAHARSGSVQDLRAL 112
           P R                                 D+ +WNA+++ +  +G V D   L
Sbjct: 148 PQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNAMVNGYCNNGRVNDALRL 207

Query: 113 FDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLD 171
           F +MP RD +S+ + I G    G S +AL  F  M        +  T V  L+A A++LD
Sbjct: 208 FCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILD 267

Query: 172 LRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
              G QIH  +       G + FV  +L   YA    +  A  +F     +N+V W  ++
Sbjct: 268 FYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCKNVVVWTALL 327

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------- 268
           +G   N +  + +++F EM    + P+E + ++ L +C                      
Sbjct: 328 TGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLE 387

Query: 269 --------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                         + G I DA  +F  I EK+ V W ++IVG  Q+G    AL+LF EM
Sbjct: 388 NAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEM 447

Query: 315 LSEDVRPDKFSISSVVSSCAKLASL-----YHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           L E V  D+ +++ ++S+C++   L     + G     +++ L V+      + ++D+  
Sbjct: 448 LREGVESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEH----YACMVDVLG 503

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           +CG  ++A  +   MP    V  NSM+
Sbjct: 504 RCGEVEEAEALATSMP----VEANSMV 526



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 46/306 (15%)

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K  ++D AR +F+++ + ++  +  ++  Y  N    + I+LF   Q+     D ++ ++
Sbjct: 69  KNQKLDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFN--QIPSNTKDTISWNS 126

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           ++ A         A +LF  + +++++ WTT+I G+   G+  +A   FN M        
Sbjct: 127 VIKASIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPY------ 180

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
                                          VD D+   +A+++ YC  G  +DA  +F 
Sbjct: 181 -------------------------------VDKDVATWNAMVNGYCNNGRVNDALRLFC 209

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHA-DLF 440
            MP+R+V+SW S+I G  +NG+  +AL  +  ++    +   S T V  LSA     D +
Sbjct: 210 QMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGISSTTLVCGLSAAAKILDFY 269

Query: 441 ERGQNHFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
              Q H        G    LD +  A ++        +  A  +      K N ++W+ L
Sbjct: 270 AGIQIHCCMFK--FGFCCGLDEFVSASLVTFYASCKRMGDACKVFGETVCK-NVVVWTAL 326

Query: 499 LSVCAM 504
           L+ C +
Sbjct: 327 LTGCGL 332


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/596 (34%), Positives = 343/596 (57%), Gaps = 39/596 (6%)

Query: 138 REALQVFS--RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
           REA+++F    ++ D F+    T+ + ++AC  L  +R  K++   +V      +++V N
Sbjct: 97  REAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLYVMN 156

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM------- 248
            +  ++ K G +  AR LFD M  +++ SW  MI G++ +G   +   LF  M       
Sbjct: 157 RVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDG 216

Query: 249 ----------------------QL------LGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
                                 Q+       G+  D      ++    + G I+DA  +F
Sbjct: 217 RSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVF 276

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
             + EK  V W ++I  Y  +G  E+AL  + EM     + D F+IS V+  CA+LASL 
Sbjct: 277 DQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICARLASLE 336

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           + +  H   V  G D D++ ++AL+D Y K G  +DAW VFN M  +NV+SWN++I GY 
Sbjct: 337 YAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYG 396

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +GQ  EA+ +++++L+E + P+  TF++VLSAC ++ L ERG   F S+S  H + P  
Sbjct: 397 NHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRA 456

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
            HYACM+ LLGR   +D+A +LI+S P KP + +W+TLL+ C M  +++ G++AA +L+ 
Sbjct: 457 MHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYG 516

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
           +EP     YI+L N+Y + G+ ++ A +  ++K K ++   A +WIE+  + + F+  D+
Sbjct: 517 MEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDK 576

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK 640
           +H +T+ IYE+++ ++ ++   G+    K +L D  EEE+ + + YHSEKLA+A+ LI  
Sbjct: 577 SHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQ-RILKYHSEKLAIAFGLINT 635

Query: 641 PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           PH  TP++I +  RVCGDCH  +KF + + GR I++RD++RFHHF  G+CSC D W
Sbjct: 636 PHW-TPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 197/442 (44%), Gaps = 82/442 (18%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N +L  H + G + D R LFD+MP +D  S+ T I GF + G   EA  +F  M 
Sbjct: 151 DLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMW 210

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++  +    T  + + A A L  ++ G+QIH   +   +G + FV  AL DMY+K G I+
Sbjct: 211 EEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIE 270

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +FD+M  +  V WN +I+ Y  +G  ++ +  + EM+  G   D  T+S ++  C 
Sbjct: 271 DAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFTISIVIRICA 330

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
           +                                    GR++DA  +F+ ++ K+ + W  
Sbjct: 331 RLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNA 390

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I GY  +G+ E+A+ +F +ML E + P+  +  +V+S+C+                   
Sbjct: 391 LIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACS------------------- 431

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMINGYAQNGQDLEA 408
                             G+++  W +F  M   + V      +  M+    + G   EA
Sbjct: 432 ----------------YSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEA 475

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMI 467
              Y+ +     KP +  + ++L+AC   +  E G+   +++   +G+ P  L +Y  ++
Sbjct: 476 ---YELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENL---YGMEPEKLCNYIVLL 529

Query: 468 NLLGRSSDVDKAVDLIKSLPHK 489
           NL   S  + +A  ++++L  K
Sbjct: 530 NLYNSSGKLKEAAGVLQTLKRK 551


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/646 (34%), Positives = 357/646 (55%), Gaps = 54/646 (8%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L N L+  YAK G++  A+ +FD++  RD++SWNA++SA+A +G ++    ++ +M   D
Sbjct: 97  LQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSAD 156

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            + ++T I+  A  G  REAL+++  M      P   T  + L AC +L DL  G  +  
Sbjct: 157 VLCWSTMISAEAMAGHDREALELYREMILS-VRPNASTLATVLAACTRLGDLSSGALVRD 215

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKAR-WLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +   L  +  V   L ++YA+ G++  AR  LFD M +R +VSWN M++ + +N    
Sbjct: 216 GAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNA--- 272

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                           R+D+A +LF  + +K  + W  MI G+ 
Sbjct: 273 --------------------------------RVDEAEKLFREMPDKSVISWNAMIAGFG 300

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--- 356
           QNG+ + AL LF  M  E ++P + +  SV+ +CA L +   G+ +       G+D+   
Sbjct: 301 QNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICD-----GMDEALA 355

Query: 357 -DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
            D+ V++++ +MY KCG+ + A   F  M  R+VVSW ++I  Y+QNG   EAL ++  +
Sbjct: 356 KDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIM 415

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA--VHGITPSLDHYACMINLLGRS 473
           +Q  ++P+  T ++ LSAC H  LF+ G + F S+ +   +G+T +  H+ C I+LLGR+
Sbjct: 416 VQAGVEPNGITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRA 475

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI---NAGPYI 530
             +  A  LI  +P K  ++ W++LLS C    D+K     A HLFEL+     +  PY+
Sbjct: 476 GYLKDAETLITKMPFKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELDESSIKDPAPYV 535

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
           MLSN+YA+ G       +R  ++ K  KK    S I I  + ++F S D THP  +  Y 
Sbjct: 536 MLSNIYASAGDRAAEMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLDETHPRRDDAYN 595

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           EL +L +K++EAG+ P+T++     +EEE  +S+ YHSEKLALA+ ++  P   + + I+
Sbjct: 596 ELRRLFQKMKEAGYVPDTRIAE--MEEEETEQSLSYHSEKLALAFGVLNTPPEAS-LCIV 652

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+RVC DCH  +KF S  + R I +RD+ RFHHF  G CSC+D W
Sbjct: 653 KNLRVCSDCHNVIKFLSKHLNRKIAVRDATRFHHFENGFCSCRDCW 698



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 139/261 (53%), Gaps = 13/261 (4%)

Query: 33  CTRVNDVELAK-----RLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD-LFDKMP 86
           CTR+ D+          +QS +D +     T      L++ YA+ G +  AR+ LFD M 
Sbjct: 201 CTRLGDLSSGALVRDGAIQSGLDRDAVVGTT------LVNLYARFGDVIAAREVLFDSMK 254

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            R ++SWNA+++A A++  V +   LF +MP +  +S+N  IAGF   G  ++AL++F R
Sbjct: 255 DRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRR 314

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  +  +P+  T+ S L+ACA L     G+ I   +    L  ++ V N++ +MY K G 
Sbjct: 315 MDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMDEA-LAKDISVANSICNMYGKCGL 373

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            + AR  F  M  R++VSW  +I+ Y +NG   + +D+F+ M   G+ P+ +T+ N L A
Sbjct: 374 PELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSA 433

Query: 267 CFQTGRIDDAGRLFHVIKEKD 287
           C      D+   +F  +   D
Sbjct: 434 CSHGALFDEGSDIFSSLVSGD 454



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 144/334 (43%), Gaps = 99/334 (29%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE 257
           MY   G ++ AR +FD M  RN  SW ++IS Y+  G+ ++ + L++ +      +  D 
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 258 VTVSNILGAC-----------------------------------FQTGRIDDAGRLFHV 282
              S++L AC                                    + GRID A ++F  
Sbjct: 61  FIFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDR 120

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED------------------------ 318
           I  +D V W  M+    + G  E AL ++ EM+S D                        
Sbjct: 121 ITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELY 180

Query: 319 ------VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
                 VRP+  ++++V+++C +L  L  G +V   A+  G+D D +V + L+++Y + G
Sbjct: 181 REMILSVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFG 240

Query: 373 ------------------------VT--------DDAWTVFNMMPTRNVVSWNSMINGYA 400
                                   VT        D+A  +F  MP ++V+SWN+MI G+ 
Sbjct: 241 DVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFG 300

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           QNG+  +AL L+ ++  E L+P   T+ SVL AC
Sbjct: 301 QNGRPKQALELFRRMDLEGLQPSRMTYCSVLDAC 334



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 172/412 (41%), Gaps = 102/412 (24%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN---------------------- 125
           +D+   NAL++ +A+ G +   + +FD++  RD VS+N                      
Sbjct: 93  QDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQEM 152

Query: 126 ---------TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                    T I+  A  G  REAL+++  M      P   T  + L AC +L DL  G 
Sbjct: 153 VSADVLCWSTMISAEAMAGHDREALELYREMILS-VRPNASTLATVLAACTRLGDLSSGA 211

Query: 177 QIH-GKI--------VVGNLGGNVFVR-----------------------NALTDMYAKG 204
            +  G I        VVG    N++ R                       NA+   +A+ 
Sbjct: 212 LVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQN 271

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
             +D+A  LF  M +++++SWN MI+G+ +NG+PK+ ++LF+ M L GL P  +T  ++L
Sbjct: 272 ARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVL 331

Query: 265 GACF----------------------------------QTGRIDDAGRLFHVIKEKDNVC 290
            AC                                   + G  + A + F  +  +D V 
Sbjct: 332 DACANLTASSLGRFICDGMDEALAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVS 391

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WT +I  Y+QNG   +AL +F  M+   V P+  ++ + +S+C+  A    G  +    V
Sbjct: 392 WTAIIAAYSQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFSSLV 451

Query: 351 ---VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
                GV  +       ID+  + G   DA T+   MP +   V+W S+++ 
Sbjct: 452 SGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSA 503



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 132/285 (46%), Gaps = 43/285 (15%)

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML--SEDVRPDKFSISS 328
           GR++DA  +F  +  ++   W  +I  Y   GKE++AL L+  ++  S +++ D F  SS
Sbjct: 6   GRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAFIFSS 65

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           V+++CA+L  L  G  +H + V  GV  D+ + +AL+ MY KCG  D A  VF+ +  R+
Sbjct: 66  VLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRD 125

Query: 389 VVSWNSMINGYAQ-------------------------------NGQDLEALALYDKLLQ 417
           VVSWN+M++  A+                                G D EAL LY +++ 
Sbjct: 126 VVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMIL 185

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRS 473
            +++P++ T  +VL+AC        G    D       I   LD  A     ++NL  R 
Sbjct: 186 -SVRPNASTLATVLAACTRLGDLSSGALVRDG-----AIQSGLDRDAVVGTTLVNLYARF 239

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            DV  A +++         + W+ +++  A    +   E   R +
Sbjct: 240 GDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREM 284



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 38/214 (17%)

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN--LKPDS 424
           MY  CG  +DA  VF+ MP RN  SW  +I+ Y   G++ EAL LY  L++ +  ++ D+
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADA 60

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
           F F SVL+AC      E+G    + I    G+   +     ++ +  +   +D+A  +  
Sbjct: 61  FIFSSVLAACARLKCLEQGLEIHERI-VKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFD 119

Query: 485 SLPHK------------------------------PNSLIWSTLLSVCAMKG-DIKHGEM 513
            + H+                               + L WST++S  AM G D +  E+
Sbjct: 120 RITHRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALEL 179

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
               +  + P NA     L+ + AAC R  D++S
Sbjct: 180 YREMILSVRP-NAST---LATVLAACTRLGDLSS 209


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/624 (33%), Positives = 346/624 (55%), Gaps = 40/624 (6%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G++     + D++P   ++++     A   SGS+   R +FD++   ++  +NT I G++
Sbjct: 39  GQMLKTGLILDEIPASKLLAF----CASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYS 94

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           N     EAL ++  M         YT    L AC+ +      +QIH  I+    G  ++
Sbjct: 95  NSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIY 154

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
             N+L ++Y+K G+I  AR LFD+++ R+ VSWN MI GY K G+               
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGE--------------- 199

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                               I+ A  +F+ + E++ + WT+MI G    GK ++AL LF+
Sbjct: 200 --------------------IEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFH 239

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M +  ++ D  ++ S + +CA L  L  G+ +H       ++ D ++   LIDMY KCG
Sbjct: 240 RMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCG 299

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             ++A  VF  M  + V  W +MI+GYA +G+  EAL  + K+    ++P+  TF  +L+
Sbjct: 300 DLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILT 359

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L    +  F+S+  +HG  PS++HY CM++LLGR+  + +A +LI+++P KPN+
Sbjct: 360 ACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNA 419

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            IW  LL+ C + G+++ G+   + L +++P + G YI L++++AA G W   A +R  M
Sbjct: 420 AIWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQM 479

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K + V K    S I ++   H+F++ D +HP+ + I   L +++++L+E G+ P    +L
Sbjct: 480 KEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLL 539

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            D +++EK  +I +HSEKLA+ + LI    G+T IRI+KN+RVC DCH  +K  S +  R
Sbjct: 540 LDLEDKEKETAIHHHSEKLAVTFGLISTKPGMT-IRIVKNLRVCEDCHTVIKLISKVYAR 598

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I++RD  RFH F  GNC+C D W
Sbjct: 599 EILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 144/253 (56%), Gaps = 3/253 (1%)

Query: 29  LVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           L+  C+ ++  E  +++ +H+  + F   +  +  N LL+ Y+KSG +  AR LFD++  
Sbjct: 124 LLKACSSMSASEETQQIHAHIIKMGF--GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD +SWN+++  + + G ++    +F+ MP R+ +S+ + I+G    G  +EAL +F RM
Sbjct: 182 RDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRM 241

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    +  +   VS L ACA L  L +GK IH  I    +  +  +   L DMYAK G++
Sbjct: 242 QTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDL 301

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           ++A  +F +M  + +  W  MISGY  +G+ ++ ++ F +MQ  G+ P+++T + IL AC
Sbjct: 302 EEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTAC 361

Query: 268 FQTGRIDDAGRLF 280
              G + +A  LF
Sbjct: 362 SHAGLVHEAKLLF 374



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 164/406 (40%), Gaps = 101/406 (24%)

Query: 63  NRLLHFYAK--SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           ++LL F A   SG L YAR +FD++   +   W                           
Sbjct: 54  SKLLAFCASPNSGSLAYARTVFDRIFRPNTFMW--------------------------- 86

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
               NT I G++N     EAL ++  M         YT    L AC+ +      +QIH 
Sbjct: 87  ----NTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHA 142

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK------ 234
            I+    G  ++  N+L ++Y+K G+I  AR LFD+++ R+ VSWN MI GY K      
Sbjct: 143 HIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEM 202

Query: 235 -------------------------NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
                                     G+PK+ ++LF  MQ  G+  D V + + L AC  
Sbjct: 203 AYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACAD 262

Query: 270 TGRID-----------------------------------DAGRLFHVIKEKDNVCWTTM 294
            G +D                                   +A  +F  ++EK    WT M
Sbjct: 263 LGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAM 322

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-HGKAVVLG 353
           I GY  +G+  +AL  F +M +  V P++ + + ++++C+    ++  +++      + G
Sbjct: 323 ISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 382

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
               +     ++D+  + G+  +A  +   MP + N   W +++N 
Sbjct: 383 FKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNA 428


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 338/600 (56%), Gaps = 38/600 (6%)

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
           + +G    AL+VF R       P   T   AL+ACA+L DLR G+ +  +        +V
Sbjct: 85  SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           FV ++L  +YA+ G +  A  +FDRM  R+ V+W+ M++G++  GQP   I +++ M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 252 GLNPDEVTVSNILGACF-----------------------------------QTGRIDDA 276
           G+  DEV +  ++ AC                                    + G +D A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            R+F ++  +++V W+ MI G+ QNG+ ++AL LF  M +  ++PD  ++ S + +C+ +
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             L  G+ VHG  +V   D + ++ +A IDMY KCG    A  +FNM+  R+++ WN+MI
Sbjct: 324 GFLKLGRSVHG-FIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
                +G+  +AL L+ ++ +  ++PD  TF S+LSA  H+ L E G+  F  +     I
Sbjct: 383 ACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKI 442

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           TP+  HY C+++LL RS  V++A DL+ S+  +P   IW  LLS C     ++ GE  A 
Sbjct: 443 TPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD 502

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           ++ EL+P + G   ++SN+YAA  +W+ V  +R  MK    KK    S IEI    H F+
Sbjct: 503 NILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFL 562

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
            ED++HP+ E I  +++KL  ++++ G+ P T+ V HD +EE K + + YHSEKLA+A+ 
Sbjct: 563 MEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFG 622

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           L+    G T + I+KN+RVCGDCH  +K+ S I  R I++RD+ RFHHF  G CSC+D W
Sbjct: 623 LLNTGPG-TRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 195/392 (49%), Gaps = 48/392 (12%)

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD     D+   ++LL  +AR G++ D   +FD+MP RD V+++T +AGF + G   +A+
Sbjct: 135 FDAGYKDDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAI 194

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           Q++ RM++D  +  +   +  + AC    ++R G  +HG ++   +  +V    +L DMY
Sbjct: 195 QMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMY 254

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK G +D A  +F  M +RN VSW+ MISG+ +NGQ  + + LF+ MQ  G+ PD   + 
Sbjct: 255 AKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALV 314

Query: 262 NILGACFQTG--------------RID--------------------DAGRLFHVIKEKD 287
           + L AC   G              R D                     A  LF++I ++D
Sbjct: 315 SALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD 374

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W  MI     +G+ +DAL LF EM    +RPD  + +S++S+ +     + G V  G
Sbjct: 375 LILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALS-----HSGLVEEG 429

Query: 348 KAVVLGVDDDLLVSSA------LIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYA 400
           K     + +   ++ A      L+D+  + G+ ++A  +   M     V+ W ++++G  
Sbjct: 430 KLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCL 489

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
            N +     ++ D +L+  L+PD    ++++S
Sbjct: 490 NNKKLELGESIADNILE--LQPDDVGVLALVS 519



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 151/347 (43%), Gaps = 47/347 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E     ++  CT   +V +   +  H+ L             L+  YAK+G L  
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +F  M  R+ +SW+A++S                               GFA  G S
Sbjct: 263 ACRVFGLMVHRNDVSWSAMIS-------------------------------GFAQNGQS 291

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL++F  MQ    +P     VSAL AC+ +  L+ G+ +HG  +V     N  +  A 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG-FIVRRFDFNCILGTAA 350

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY+K G +  A+ LF+ +++R+L+ WN MI+    +G+ +  + LFQEM   G+ PD 
Sbjct: 351 IDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDH 410

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIVGYTQNGKEEDALI 309
            T +++L A   +G +++    F  +         EK  VC   ++    ++G  E+A  
Sbjct: 411 ATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLL---ARSGLVEEASD 467

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           L   M +E   P      +++S C     L  G+ +    + L  DD
Sbjct: 468 LLTSMKAE---PTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 3/209 (1%)

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +++ G    AL +F   L    RPD  + +  +S+CA+L  L  G+ V  +A   G  DD
Sbjct: 84  HSRRGSPASALRVFRA-LPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           + V S+L+ +Y + G   DA  VF+ MP R+ V+W++M+ G+   GQ L+A+ +Y ++ +
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + +K D    + V+ AC  A     G +    +   HG+   +     ++++  ++  +D
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLD 261

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A  +   + H+ N + WS ++S  A  G
Sbjct: 262 VACRVFGLMVHR-NDVSWSAMISGFAQNG 289


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 327/577 (56%), Gaps = 39/577 (6%)

Query: 123 SYNTAIAGFANKGFSREALQVFSR--MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
           +YN  +  F+        +  F+   +  +   P +YT  S L ACA L  +  G+++H 
Sbjct: 92  AYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHC 151

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            +       N+FVRN+L D+Y K G    A+ LFD M  R++VSWN +ISGY        
Sbjct: 152 FVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGY-------- 203

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                     CF +G +D A  +F  + EK+ V W+TMI GY +
Sbjct: 204 --------------------------CF-SGMVDKARMVFDGMMEKNLVSWSTMISGYAR 236

Query: 301 NGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           N K  DA+ LF +M  E  + P+  ++ SV+S+CA L +L  G+ +H       ++  L 
Sbjct: 237 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 296

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL DMY KCG   +A  VF+ M  R+V+SW+ +I G A  G   EA   + +++++ 
Sbjct: 297 LGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG 356

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           L+P+  +F+ +L+AC HA L ++G  +FD +  V+GITP ++HY C+++LL R+  +D+A
Sbjct: 357 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 416

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
             LI S+P +PN ++W  LL  C +  D + GE     + EL+  ++G  + L+N+YA+ 
Sbjct: 417 ESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASM 476

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
           GR +D AS R  M+     K    SWIEI+N V++F   D +HP++  IY  + +L  K+
Sbjct: 477 GRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKM 536

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           + AG+ P T LV+H+  EEEK  ++  HSEKLALA+ LI    G T IRI+KN+RVC DC
Sbjct: 537 KVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTT-IRIVKNLRVCNDC 595

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H  +K  S I+ R I++RD +RFHHF  G CSC D W
Sbjct: 596 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 183/362 (50%), Gaps = 13/362 (3%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E  +T ++  C  +  V   +++   +     E N  F+ N L+  Y K G    A+ LF
Sbjct: 127 EYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNL-FVRNSLVDLYFKVGCNCIAQKLF 185

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D+M +RD++SWN L+S +  SG V   R +FD M  ++ VS++T I+G+A      +A++
Sbjct: 186 DEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIE 245

Query: 143 VFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           +F +MQ +    P D T VS L+ACA L  L  GK IH  I    +   +F+ NAL DMY
Sbjct: 246 LFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMY 305

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK G + +A+ +F  M+ R+++SW+++I G    G   +  + F EM   GL P++++  
Sbjct: 306 AKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFM 365

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLS 316
            +L AC   G +D     F ++ +   +      +  ++   ++ G+ + A  L N M  
Sbjct: 366 GLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSM-- 423

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA-LIDMYCKCGVTD 375
             ++P+     +++  C        G+ V  +  +L +D +   S   L ++Y   G  D
Sbjct: 424 -PMQPNVIVWGALLGGCRIYKDAERGERVVWR--ILELDSNHSGSLVYLANVYASMGRLD 480

Query: 376 DA 377
           DA
Sbjct: 481 DA 482



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 143/314 (45%), Gaps = 51/314 (16%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           ++P+ + V   +G     G +  +  +F H +   +   +  ++  ++Q+      +  F
Sbjct: 55  IDPNIIAV-KFIGVSSSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYF 113

Query: 312 NE--MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           N   +L     PD+++ +SV+ +CA LA +  GQ VH      G + +L V ++L+D+Y 
Sbjct: 114 NNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYF 173

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           K G    A  +F+ M  R+VVSWN++I+GY  +G   +A  ++D ++++NL     ++ +
Sbjct: 174 KVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL----VSWST 229

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           ++S       + R + + D                              A++L + + H+
Sbjct: 230 MISG------YARNEKYAD------------------------------AIELFRQMQHE 253

Query: 490 ----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGRWE 543
               PN +   ++LS CA  G +  G+   R       I  G ++   L++MYA CG   
Sbjct: 254 GGLAPNDVTLVSVLSACAHLGALDLGKWIHR-FIRRNKIEVGLFLGNALADMYAKCGCVL 312

Query: 544 DVASIRSSMKSKNV 557
           +   +   M  ++V
Sbjct: 313 EAKGVFHEMHERDV 326


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/664 (32%), Positives = 360/664 (54%), Gaps = 40/664 (6%)

Query: 71  KSGKLFYARDLFDKMPLRD--IISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           K G+  +A         RD  +   N+L++ + +   V   R LFD MP R+ VS++  +
Sbjct: 36  KFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALM 95

Query: 129 AGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           AG+   G   E  ++F +M  KD   P +Y   +A+++C   + +  GKQ HG  +   L
Sbjct: 96  AGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGL 154

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             + +V+NAL  +Y+K  ++  A  +   +   ++  +NL+++G L++    + +D+ + 
Sbjct: 155 EFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKL 214

Query: 248 MQLLGLNPDEVTVSNILGACF-----------------------------------QTGR 272
           +   G+  +  T   I   C                                    + G 
Sbjct: 215 IISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGN 274

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           +      F  ++ ++ V WT++I  Y QN   E+AL LF++M  + + P++++++ + +S
Sbjct: 275 VLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNS 334

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
            A L++L  G  +H +A   G+  +++V +ALI MY K G    A +VF+ M   N+++W
Sbjct: 335 AAGLSALCLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITW 394

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
           N++I G++ +G   EAL+++  ++    +P+  TF+ V+ AC H  L + G  +F+ +  
Sbjct: 395 NAIITGHSHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMK 454

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
              I P L+HY C++ LL RS  +D+A + ++S     + + W TLL+ C +      G 
Sbjct: 455 QFRIVPGLEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGR 514

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
             A +L +LEP + G YI+LSNM+A   RW+ V  IR  M+ +NVKK    SW+EI N  
Sbjct: 515 KIAEYLLQLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVA 574

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
           H F SED  HPE  +IYE +  L+ K++  G+ P+   VLHD ++E+KV ++ YHSEKLA
Sbjct: 575 HVFTSEDIKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLA 634

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           +AY L+K P G  PI ++KN+R+C DCH  +K  S +  R I++RD+NRFHHF  G CSC
Sbjct: 635 VAYGLMKTPSG-APITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSC 693

Query: 693 KDNW 696
            D W
Sbjct: 694 GDYW 697



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 157/330 (47%), Gaps = 45/330 (13%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLG---GNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +  L   A   +L+ G+ IH  + + N       V   N+L ++Y K  E+  AR LFD 
Sbjct: 23  IKLLKVAADAKNLKFGRTIHAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDS 82

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC-------- 267
           M  RN+VSW+ +++GY++NG P +  +LF++M +   + P+E  ++  + +C        
Sbjct: 83  MPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYVEG 142

Query: 268 -------FQTG----------------RIDDAG---RLFHVIKEKDNVCWTTMIVGYTQN 301
                   ++G                +  D G   ++ + +   D  C+  ++ G  Q+
Sbjct: 143 KQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQH 202

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
               +A+ +   ++SE +  +  +  ++   CA L  +  G+ VH + +   +D D+ + 
Sbjct: 203 THMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIG 262

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           S++IDMY KCG      T F+ + +RNVVSW S+I  Y QN    EAL L+ K+  + + 
Sbjct: 263 SSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIP 322

Query: 422 PDSFTFVSVLSA-------CLHADLFERGQ 444
           P+ +T   + ++       CL   L  R +
Sbjct: 323 PNEYTMAVLFNSAAGLSALCLGDQLHARAE 352



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 47/178 (26%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N L+  Y KSG +  A+ +F  M   +II+WNA+++ H                      
Sbjct: 364 NALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGH---------------------- 401

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG------- 175
                    ++ G  +EAL +F  M      P   T +  + ACA L  +  G       
Sbjct: 402 ---------SHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHL 452

Query: 176 -KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR-WLFDRMNNRNLVSWNLMISG 231
            KQ   +IV G     +     +  + ++ G +D+A  ++     N ++VSW  +++ 
Sbjct: 453 MKQF--RIVPG-----LEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNA 503


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 327/588 (55%), Gaps = 39/588 (6%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRR-GKQIHG-KIVVGNLGGNVFVRNALTDMYAKG 204
           M +    P D+T  SA  A A        G QIH   I  G L  + FV  A  DMY K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  AR LF  M NRN+V+WN +++  + +G+P + I+ +  ++  G  P+ V+     
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 265 GAC--------------------FQT------------GRIDDAGR---LFHVIKEKDNV 289
            AC                    F+             G+   AG+   +F  +  +++V
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W +M+  Y QNG EE+A   +         P  F +SS +++CA L  L+ G+ +H  A
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVA 240

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           V   +D ++ V+SAL+DMY KCG  +DA  +F   P RN+V+WN+MI GYA  G    AL
Sbjct: 241 VRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNAL 300

Query: 410 ALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
            ++D +++     P+  T V+V+++C    L + G   F+++    GI P  +HYAC+++
Sbjct: 301 LVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVD 360

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+   ++A ++I+ +P +P+  +W  LL  C M G  + G +AA  LFEL+P ++G 
Sbjct: 361 LLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSGN 420

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           +++LSNM+A+ GRW +   IR  MK+  +KK    SW+   N VH F ++D  H     I
Sbjct: 421 HVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNEI 480

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
              LSKL K++Q AG+ P+T+  L+D +EEEK   +  HSEKLALA+ LI  P GV PIR
Sbjct: 481 QALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGV-PIR 539

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IMKN+R+C DCH   KF S I+GR II+RD+NRFHHF    CSC D W
Sbjct: 540 IMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 176/402 (43%), Gaps = 69/402 (17%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           Y P   F+    L  Y K+G+L  AR LF +MP R++++WNA+++            A+ 
Sbjct: 42  YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMT-----------NAVL 90

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
           D  P+                    E ++ +  +++    P   +  +  NACA  + L 
Sbjct: 91  DGRPL--------------------ETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLS 130

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
            G+Q HG +V      +V V N++ D Y K     KAR +FD M  RN VSW  M++ Y 
Sbjct: 131 LGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYA 190

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------- 268
           +NG  ++    +   +  G  P +  VS+ L  C                          
Sbjct: 191 QNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIF 250

Query: 269 ----------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML-SE 317
                     + G ++DA ++F+   +++ V W  MI GY   G  ++AL++F++M+ S 
Sbjct: 251 VASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSG 310

Query: 318 DVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           +  P+  ++ +V++SC++      G ++        G++      + ++D+  + G+ + 
Sbjct: 311 ETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQ 370

Query: 377 AWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALYDKLLQ 417
           A+ V   MP R  +S W +++     +G+        +KL +
Sbjct: 371 AYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFE 412



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G+  T+   +  +  C  +  + L + L +    +  + N  F+ + L+  Y K G +  
Sbjct: 209 GEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANI-FVASALVDMYGKCGCVED 267

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS------VSYNTAIAGF 131
           A  +F + P R++++WNA++  +A  G  Q+   +FD M IR        ++    I   
Sbjct: 268 AEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDM-IRSGETAPNYITLVNVITSC 326

Query: 132 ANKGFSREALQVFSRMQKDRF--EP 154
           +  G +++  ++F  M ++RF  EP
Sbjct: 327 SRGGLTKDGYELFETM-RERFGIEP 350


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 237/711 (33%), Positives = 369/711 (51%), Gaps = 103/711 (14%)

Query: 57  NTTFLHNRLLHFYAKSGK---LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  ++L+ F   S     L YA  +F+ +   +++ WN +   HA S          
Sbjct: 17  NTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSS--------- 67

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
                 D VS                AL ++  M      P  YT    L +CA+    R
Sbjct: 68  ------DPVS----------------ALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 105

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS--------- 224
            G+QIHG ++      +++V  +L  MY + G ++ AR +FD+ ++R++VS         
Sbjct: 106 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 165

Query: 225 ----------------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                                 WN MISGY + G  K+ ++LF+EM    + PDE T+ +
Sbjct: 166 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 225

Query: 263 ILGACFQT-----------------------------------GRIDDAGRLFHVIKEKD 287
           ++ AC Q+                                   G ++ A  LF  +  KD
Sbjct: 226 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 285

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W T+I GYT     ++AL+LF EML     P+  ++ S++ +CA L ++  G+ +H 
Sbjct: 286 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 345

Query: 348 --KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
                + GV +     ++LIDMY KCG  + A  VF+ +  R++ SWN+MI G+A +G+ 
Sbjct: 346 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 405

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             A  ++ ++ +  ++PD  TFV +LSAC H+ + + G++ F S+   + ITP L+HY C
Sbjct: 406 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 465

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLG S    +A ++I ++  +P+ +IW +LL  C M G+++ GE  A++L ++EP N
Sbjct: 466 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKN 525

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA  GRW +VA IR+ +  K +KK    S IEID+ VH+F+  D+ HP  
Sbjct: 526 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 585

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    G T
Sbjct: 586 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG-T 644

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 645 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 125/456 (27%), Positives = 221/456 (48%), Gaps = 63/456 (13%)

Query: 29  LVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           L+  C +       +++  H+     DL+ Y      +H  L+  Y ++G+L  AR +FD
Sbjct: 94  LLKSCAKSKAFREGQQIHGHVLKLGYDLDLY------VHTSLISMYVQNGRLEDARKVFD 147

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +   RD++S+ AL++ +A  G +   + +FD++PI+D VS+N  I+G+A  G ++EAL++
Sbjct: 148 QSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALEL 207

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M K    P + T VS ++ACAQ   +  G+Q+H  I     G N+ + NAL D+Y K
Sbjct: 208 FKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIK 267

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            GE++ A  LF+ ++ ++++SWN +I GY      K+ + LFQEM   G +P++VT+ +I
Sbjct: 268 CGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSI 327

Query: 264 LGACFQTGRIDDAGRLFHVIKEK--------------------------------DNV-- 289
           L AC   G I + GR  HV   K                                D++  
Sbjct: 328 LPACAHLGAI-EIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 386

Query: 290 ----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                W  MI G+  +G+   A  +F+ M   ++ PD  +   ++S+C+     + G + 
Sbjct: 387 RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACS-----HSGMLD 441

Query: 346 HGKAVVLGVDDDLLVSSAL------IDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING 398
            G+ +   + +D  ++  L      ID+    G+  +A  + N M    + V W S++  
Sbjct: 442 LGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKA 501

Query: 399 YAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSA 433
              +G      +    L++ E   P S+  +S + A
Sbjct: 502 CKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYA 537



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 139/287 (48%), Gaps = 36/287 (12%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S ++  C  +   D    A  +F  I+E + + W TM  G+  +  
Sbjct: 9   QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 68

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL L+  M+S  + P+ ++   ++ SCAK  +   GQ +HG  + LG D DL V ++
Sbjct: 69  PVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 128

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS----------------------------- 394
           LI MY + G  +DA  VF+    R+VVS+ +                             
Sbjct: 129 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSW 188

Query: 395 --MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
             MI+GYA+ G + EAL L+ ++++ N++PD  T VSV+SAC  +   E G+     I  
Sbjct: 189 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 248

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            HG   +L     +I+L  +  +V+ A  L + L +K + + W+TL+
Sbjct: 249 -HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLI 293



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 116/258 (44%), Gaps = 35/258 (13%)

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD----AWTVFNMMPTRNVVSWNSMING 398
           +++H + +  G+ +     S LI+ +C      D    A +VF  +   N++ WN+M  G
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG--- 455
           +A +   + AL LY  ++   L P+ +TF  +L +C  +  F  GQ        +HG   
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQ-------IHGHVL 115

Query: 456 -ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
            +   LD Y    +I++  ++  ++ A  +     H+ + + ++ L++  A KG I    
Sbjct: 116 KLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTALITGYASKGYIA--- 171

Query: 513 MAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK-----------F 560
            +A+ +F+  PI +   +  + + YA  G  ++   +   M   NV+             
Sbjct: 172 -SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 230

Query: 561 AAYSWIEIDNKVHKFVSE 578
           A  + IE+  +VH ++ +
Sbjct: 231 AQSASIELGRQVHSWIDD 248


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 307/523 (58%), Gaps = 37/523 (7%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACF 268
           A  +F+++   N+ +WN MI G+ ++  P   ++LF +M     + PD  T   +  A  
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
           +                                    G +  A ++F ++  +D V W +
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNS 207

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+  NG   +AL L+ EM SE V PD F++ S++S+C +L +L  G+ VH   V +G
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  +   S+AL+D+Y KCG   DA  VF+ M  R+VVSW S+I G A NG   EAL L+ 
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFG 327

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +L ++ LKP   TFV VL AC H  + + G N+F  +   +GI P ++H+ CM++LL R+
Sbjct: 328 ELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRA 387

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V  A D I+++P  PN++IW TLL  C + G ++ GE+A   +  LE  ++G +++LS
Sbjct: 388 GKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLS 447

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+  RW DV ++R  M  K VKK   YS +E+ N+V++F+  DR+HP++E  Y  L+
Sbjct: 448 NLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLA 507

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           K+ + L+  G+ P T  VL D +EEEK  ++ +H+EK+A+A+ L+  P G TPIRIMKN+
Sbjct: 508 KITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPG-TPIRIMKNL 566

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCHL +K  S +  R II+RD +RFHHF  G+CSCKD W
Sbjct: 567 RVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 47/361 (13%)

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F+K  +  ++S +A +S  A+         +F+++   +  ++NT I GFA       A+
Sbjct: 70  FNKHLIFALVSLSAPMSFAAQ---------IFNQIQAPNIFTWNTMIRGFAESENPSPAV 120

Query: 142 QVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           ++FS+M       P  +T      A A+L+D+  G+ IH  +V        FV+N+L  M
Sbjct: 121 ELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHM 180

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y+  G +  A  +F+ M+ R+ V+WN +I+G+  NG P + + L++EM   G+ PD  T+
Sbjct: 181 YSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTM 240

Query: 261 SNILGACFQTGRI-----------------------------------DDAGRLFHVIKE 285
            ++L AC + G +                                    DA ++F  ++E
Sbjct: 241 VSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE 300

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QV 344
           +  V WT++IVG   NG   +AL LF E+  + ++P + +   V+ +C+    L  G   
Sbjct: 301 RSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNY 360

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNG 403
                   G+   +     ++D+ C+ G   DA+     MP   N V W +++     +G
Sbjct: 361 FRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420

Query: 404 Q 404
            
Sbjct: 421 H 421



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 131/260 (50%), Gaps = 8/260 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  ++  GS+     +F+ M  RD V++N+ I GFA  G   EAL ++  M  +  E
Sbjct: 175 NSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVE 234

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T VS L+AC +L  L  G+++H  +V   L  N    NAL D+Y+K G    A+ +
Sbjct: 235 PDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKV 294

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R++VSW  +I G   NG   + + LF E++  GL P E+T   +L AC   G +
Sbjct: 295 FDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGML 354

Query: 274 DDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+    F  +KE+  +         M+    + GK  DA   ++ + +  V P+     +
Sbjct: 355 DEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIWRT 411

Query: 329 VVSSCAKLASLYHGQVVHGK 348
           ++ +C     L  G+V   +
Sbjct: 412 LLGACTIHGHLELGEVARAE 431



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 61/245 (24%)

Query: 13  TLYSR--GQAATEEAYTQLVL--DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           TLY     +    + +T + L   C  +  + L +R+  +M +           N LL  
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM-VKVGLVQNQHASNALLDL 281

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K G    A+ +FD+M  R ++SW +L                               I
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVSWTSL-------------------------------I 310

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLD-----LRRGKQIHGK 181
            G A  G   EAL++F  +++   +P++ T V  L AC+   +LD      RR K+ +G 
Sbjct: 311 VGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGI 370

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR----NLVSWNLM-----ISGY 232
           +        +     + D+  + G++  A   +D + N     N V W  +     I G+
Sbjct: 371 L------PRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIWRTLLGACTIHGH 421

Query: 233 LKNGQ 237
           L+ G+
Sbjct: 422 LELGE 426


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/703 (32%), Positives = 366/703 (52%), Gaps = 100/703 (14%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+HFYA+ G+L  AR +FD+M  R+++SW +++  +AR                 
Sbjct: 169 FVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYAR----------------- 211

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQI 178
                         + F+++A+ +F RM +D    P   T V  ++ACA+L DL  G+++
Sbjct: 212 --------------REFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKV 257

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           +  I    +  N  + +AL DMY K   ID A+ LFD     NL   N M S Y++ G  
Sbjct: 258 YDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLT 317

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI------------------------- 273
           K+ + +   M   G+ PD +++ + + +C Q   I                         
Sbjct: 318 KEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNAL 377

Query: 274 ----------DDAGRLFHVIKEKDNVCWTTMIVGYTQNGK-------------------- 303
                     D A R+F  +  K  V W +++ GY +NG+                    
Sbjct: 378 IDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWN 437

Query: 304 -----------EEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
                       E+A+ +F+ M S++ V  D  ++ S+ S+C  L +L   + ++     
Sbjct: 438 TIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEK 497

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+ + + L+DM+ +CG  + A ++FN +  R+V +W + I   A  G    A+ L
Sbjct: 498 NRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIEL 557

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +++++++ LKPD   F+  L+AC H  L ++G+  F+S+  +HG++P   HY CM++LLG
Sbjct: 558 FNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLG 617

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  +++A+ LIK +P +PN +IW++LL+ C ++G+++    AA  +  L P   G Y++
Sbjct: 618 RAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVL 677

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA+ GRW D+A +R SMK K ++K    S I+I  K H+F S D +HPE   I   
Sbjct: 678 LSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAM 737

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L +L ++  + G  P+   VL D  E+EK+  +  HSEKLA+A+ LI    G T IRI+K
Sbjct: 738 LDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTT-IRIVK 796

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           N+RVC  CH F KFAS +  R IILRD+NRFH    G CSC D
Sbjct: 797 NLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSD 839



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 183/360 (50%), Gaps = 40/360 (11%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN+ I G+A+ G  +EA+ +F RM      P  YT    L+ CA+  D   G QIHG I+
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLII 160

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
             +   ++FV+N+L   YA+ GE+D AR +FD M+ RN+VSW  MI GY +    K  +D
Sbjct: 161 KMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVD 220

Query: 244 LFQEM-QLLGLNPDEVTVSNILGAC-----FQTGR------------------------- 272
           LF  M +   + P+ VT+  ++ AC      +TG                          
Sbjct: 221 LFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMY 280

Query: 273 -----IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
                ID A RLF      +      M   Y + G  ++AL + N M+   +RPD+ S+ 
Sbjct: 281 MKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISML 340

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S +SSC++L ++  G+  HG  +  G +    + +ALIDMY KC   D A+ +F+ M  +
Sbjct: 341 SAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNK 400

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
            VV+WNS++ GY +NG+   A   ++ + ++N+     ++ +++SA +  +++E     F
Sbjct: 401 TVVTWNSIVAGYIENGEVDAAWETFNTMPEKNI----VSWNTIISALVQENMYEEAIEVF 456



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 150/307 (48%), Gaps = 10/307 (3%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C+++ ++   K    ++  N +E     + N L+  Y K  +   A  +FD+M  + +++
Sbjct: 346 CSQLRNILWGKSCHGYVLRNGFESWDN-ICNALIDMYMKCHRQDTAFRIFDRMSNKTVVT 404

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN++++ +  +G V      F+ MP ++ VS+NT I+    +    EA++VF  MQ    
Sbjct: 405 WNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQEC 464

Query: 153 EPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              D  T +S  +AC  L  L   K I+  I    +  +V +   L DM+++ G+ + A 
Sbjct: 465 VNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAM 524

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ + NR++ +W   I      G  ++ I+LF EM   GL PD V     L AC   G
Sbjct: 525 SIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGG 584

Query: 272 RIDDAGRLFHVIKE-----KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +     +F+ +++      ++V +  M+    + G  E+AL L  +M +E   P+    
Sbjct: 585 LVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTE---PNDVIW 641

Query: 327 SSVVSSC 333
           +S++++C
Sbjct: 642 NSLLAAC 648


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 339/588 (57%), Gaps = 8/588 (1%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQ 168
           R L    P  D+  +NT + G++       ++ VF  M +  F  P  ++    + A A 
Sbjct: 226 RRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAAN 285

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLM 228
              LR G Q+H + +   L  ++FV   L  MY + G +  AR +FD M   NLV+WN +
Sbjct: 286 FRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAV 345

Query: 229 ISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN 288
           ++   +        ++F +M    L  +  + + +L    + G ++ A R+F  +  +D+
Sbjct: 346 VTACFRGNDVSGAREIFDKM----LVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDD 401

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W+TMIVG++ NG   ++   F E+L  ++RP++ S++ V+S+C++  +   G+ +HG 
Sbjct: 402 VSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGF 461

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQNGQDLE 407
               G    + V++ALIDMY +CG    A  VF  M   R++VSW SMI G A +G   E
Sbjct: 462 VEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEE 521

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           A+ +++++ +  + PD  +F+S+L AC HA L + G+ +F  +  V+ I P+++HY CM+
Sbjct: 522 AIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMV 581

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +L GRS  + KA   I  +P  P +++W TLL  C+  G+I+  E   + L EL+P N+G
Sbjct: 582 DLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSG 641

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
             ++LSN+YA  G+W+DVASIR SM  + +KK  A+S +E+   ++KF + ++       
Sbjct: 642 DLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIE 701

Query: 588 IYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTP 646
            +E+L ++I +L+ EAG++P     L+D +EEEK   +  HSEKLALA+ L + P G   
Sbjct: 702 AHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGAN- 760

Query: 647 IRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           IRI+KN+R+C DCH  MK  S + G  I++RD NRFH F  G+CSC D
Sbjct: 761 IRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFHSFKDGSCSCGD 808



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 144/275 (52%), Gaps = 18/275 (6%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR++FDKM +R+  SWN +L+ + ++G ++  + +F +MP RD VS++T I GF++ G  
Sbjct: 358 AREIFDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSF 417

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            E+   F  + +    P + +    L+AC+Q      GK +HG +        V V NAL
Sbjct: 418 NESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNAL 477

Query: 198 TDMYAKGGEIDKARWLFDRMNN-RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
            DMY++ G +  AR +F+ M   R++VSW  MI+G   +G  ++ I +F EM   G+ PD
Sbjct: 478 IDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPD 537

Query: 257 EVTVSNILGACFQTGRIDDA-------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           E++  ++L AC   G I +         R++H+    ++  +  M+  Y ++GK + A  
Sbjct: 538 EISFISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEH--YGCMVDLYGRSGKLQKAYS 595

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
              +M    + P      +++ +C+      HG +
Sbjct: 596 FICQM---PIPPTAIVWRTLLGACSS-----HGNI 622



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 117/241 (48%), Gaps = 13/241 (5%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCA 334
           A RL     E D   + T++ GY+++ +  +++ +F EM+ +  + PD FS + VV + A
Sbjct: 225 ARRLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAA 284

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
              SL  G  +H +A+  G+D  L V++ LI MY +CG    A  VF+ MP  N+V+WN+
Sbjct: 285 NFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNA 344

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           ++    +      A  ++DK+L  N      ++  +L+  + A   E  +  F  +    
Sbjct: 345 VVTACFRGNDVSGAREIFDKMLVRNHT----SWNVMLAGYIKAGELECAKRIFSEMPHRD 400

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKGDIKHG 511
            ++     ++ MI     +   +++    + L     +PN +  + +LS C+  G  + G
Sbjct: 401 DVS-----WSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFG 455

Query: 512 E 512
           +
Sbjct: 456 K 456


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 218/639 (34%), Positives = 346/639 (54%), Gaps = 40/639 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+LLS ++++G  +D   +F KM  RD +S+N+ +A   + G    AL++   M + R  
Sbjct: 300 NSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKA 359

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T  +AL+AC  L  L   K +H  +++  L  N+ + NAL  MY K G +  A+ +
Sbjct: 360 TNYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRV 416

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
              M +R+ V+WN +I G+  N +P   I+ F  ++  G+  + +T+ N+L A       
Sbjct: 417 CKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDL 476

Query: 269 -------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                          Q G ++ +  +F V+  K++  W  ++  
Sbjct: 477 LDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSA 536

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
               G  E+AL L  +M ++ +  D+FS S   +    L  L  GQ +H   +  G + +
Sbjct: 537 NAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFESN 596

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +A +DMY KCG  DD + +     +R+  SWN +I+  A++G   +A   + ++L 
Sbjct: 597 DYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHEMLD 656

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             L+PD  TFVS+LSAC H  L + G  +F S+S   G+   ++H  C+I+LLGR+  + 
Sbjct: 657 LGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAGKLT 716

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A + I  +P  P  L+W +LL+ C + G+++    AA  LFEL+  +   Y++ SN+ A
Sbjct: 717 EAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSNVCA 776

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           +  RW DV ++R  M+S N+KK  A SW+++ N+V  F   D+ HP+   IY +L +L K
Sbjct: 777 STRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEELKK 836

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
            ++EAG+ P+T   L DT EE+K  ++  HSE++ALA+ LI    G +P+RI KN+RVCG
Sbjct: 837 IIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEG-SPLRIFKNLRVCG 895

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH   K  S IIGR IILRD+ RFHHF  G CSC D W
Sbjct: 896 DCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 218/462 (47%), Gaps = 37/462 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+S      S+++   +FD M  RD++S+N+ I    + G   ++L+ FS+M+     
Sbjct: 199 NSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTH-A 257

Query: 154 PTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            TDY  +SAL   C    +LR G+ +HG +V   L  NV V N+L  MY++ G+ + A +
Sbjct: 258 KTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEF 317

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---- 268
           +F +M  R+L+SWN M++ ++ NG   + ++L  EM       + VT +  L AC+    
Sbjct: 318 VFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLET 377

Query: 269 ----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G +  A R+  ++ ++D V W  +I G+  
Sbjct: 378 LKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHAD 437

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY-HGQVVHGKAVVLGVDDDLL 359
           N +   A+  FN +  E V  +  +I +++S+      L  HG  +H   VV G + +  
Sbjct: 438 NKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETF 497

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V S+LI MY +CG  + +  +F+++  +N  +WN++++  A  G   EAL L  K+  + 
Sbjct: 498 VQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDG 557

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +  D F+F    +   +  L + GQ    S+   HG   +       +++ G+  ++D  
Sbjct: 558 IHLDQFSFSVAHAIIGNLTLLDEGQ-QLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDV 616

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
             ++   P   +   W+ L+S  A  G  +    A   + +L
Sbjct: 617 FRILPQ-PRSRSQRSWNILISALARHGFFQQAREAFHEMLDL 657



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 224/469 (47%), Gaps = 44/469 (9%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    +LL  +   G V ++  +F ++   + VS+ + + G+A  G  +E + V+ R++
Sbjct: 93  DVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLR 152

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +D     +    + + +C  L+D   G Q+ G ++   L   V V N+L  M+     I+
Sbjct: 153 RDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIE 212

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
           +A  +FD M  R+ +SWN +I+  + NG  +K ++ F +M+      D +T+S +L  C 
Sbjct: 213 EASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCG 272

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              Q G+ +DA  +FH ++E+D + W +
Sbjct: 273 SAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNS 332

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+  +  NG    AL L  EML      +  + ++ +S+C  L +L   ++VH   ++LG
Sbjct: 333 MMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETL---KIVHAFVILLG 389

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  +L++ +AL+ MY K G    A  V  +MP R+ V+WN++I G+A N +   A+  ++
Sbjct: 390 LHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFN 449

Query: 414 KLLQENLKPDSFTFVSVLSACLHA-DLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            L +E +  +  T V++LSA L   DL + G      I  V G        + +I +  +
Sbjct: 450 LLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHI-VVAGFELETFVQSSLITMYAQ 508

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
             D++ +  +   L +K NS  W+ +LS  A  G    GE A + + ++
Sbjct: 509 CGDLNTSNYIFDVLANK-NSSTWNAILSANAHYGP---GEEALKLIIKM 553



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 136/534 (25%), Positives = 241/534 (45%), Gaps = 74/534 (13%)

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +++ GS++  + +FDKMP R+  S+N  ++GF   G+ ++A+Q F  M +    P+ Y  
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYVA 61

Query: 160 VSALNACAQLLDLRRGK-QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
            S + AC +   +  G  Q+H  ++   L  +VFV  +L   Y   G + +   +F  + 
Sbjct: 62  ASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIE 121

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI--------------- 263
             N+VSW  ++ GY  NG  K+ + +++ ++  G+  +E  ++ +               
Sbjct: 122 EPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGYQ 181

Query: 264 -LGACFQTG-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
            LG+  ++G                    I++A  +F  +KE+D + W ++I     NG 
Sbjct: 182 VLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGH 241

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E +L  F++M     + D  +IS+++  C    +L  G+ +HG  V  G++ ++ V ++
Sbjct: 242 CEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNS 301

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           L+ MY + G ++DA  VF+ M  R+++SWNSM+  +  NG    AL L  ++LQ     +
Sbjct: 302 LLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATN 361

Query: 424 SFTFVSVLSAC--------LHADLFERGQNH--------------FDSISA---VHGITP 458
             TF + LSAC        +HA +   G +H              F S++A   V  I P
Sbjct: 362 YVTFTTALSACYNLETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMP 421

Query: 459 SLDHYACMINLLGRSSDVD-----KAVDLIKSLPHKPNSLIWSTLLSVCAMKGD-IKHGE 512
             D       + G + + +     +A +L++      N +    LLS      D + HG 
Sbjct: 422 DRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGM 481

Query: 513 MAARHL----FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
               H+    FELE       I    MYA CG       I   + +KN   + A
Sbjct: 482 PIHAHIVVAGFELETFVQSSLI---TMYAQCGDLNTSNYIFDVLANKNSSTWNA 532



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 149/321 (46%), Gaps = 46/321 (14%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY+K G I+ A+ +FD+M  RN  SWN ++SG+++ G  +K +  F  M   G+ P    
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 260 VSNILGAC----------FQT--------------------------GRIDDAGRLFHVI 283
            ++++ AC          FQ                           G + +   +F  I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
           +E + V WT+++VGY  NG  ++ + ++  +  + V  ++ ++++V+ SC  L     G 
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            V G  +  G+D  + V+++LI M+  C   ++A  VF+ M  R+ +SWNS+I     NG
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG--ITPSLD 461
              ++L  + ++   + K D  T  ++L  C  A     G+        +HG  +   L+
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGR-------GLHGMVVKSGLE 293

Query: 462 HYACMIN-LLGRSSDVDKAVD 481
              C+ N LL   S   K+ D
Sbjct: 294 SNVCVCNSLLSMYSQAGKSED 314



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/380 (23%), Positives = 165/380 (43%), Gaps = 50/380 (13%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++I  NAL++ + + GS+   + +   MP RD V++N  I G A+      A++ F+ ++
Sbjct: 393 NLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLR 452

Query: 149 KDRFEPTDYTHV----SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
           ++   P +Y  +    SA  +   LLD   G  IH  IVV       FV+++L  MYA+ 
Sbjct: 453 EEGV-PVNYITIVNLLSAFLSPDDLLD--HGMPIHAHIVVAGFELETFVQSSLITMYAQC 509

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS--- 261
           G+++ + ++FD + N+N  +WN ++S     G  ++ + L  +M+  G++ D+ + S   
Sbjct: 510 GDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAH 569

Query: 262 -----------------------------------NILGACFQTGRIDDAGRLFHVIKEK 286
                                              ++ G C   G IDD  R+    + +
Sbjct: 570 AIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKC---GEIDDVFRILPQPRSR 626

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
               W  +I    ++G  + A   F+EML   +RPD  +  S++S+C+    +  G    
Sbjct: 627 SQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYF 686

Query: 347 GK-AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-VSWNSMINGYAQNGQ 404
              +   GV   +     +ID+  + G   +A    N MP     + W S++     +G 
Sbjct: 687 SSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGN 746

Query: 405 DLEALALYDKLLQENLKPDS 424
              A    D+L + +   DS
Sbjct: 747 LELARKAADRLFELDSSDDS 766



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 31/231 (13%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TF+ + L+  YA+ G L  +  +FD +  ++  +WNA+LSA+A  G              
Sbjct: 496 TFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGP------------- 542

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                               EAL++  +M+ D      ++   A      L  L  G+Q+
Sbjct: 543 ------------------GEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQL 584

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  I+      N +V NA  DMY K GEID    +  +  +R+  SWN++IS   ++G  
Sbjct: 585 HSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFF 644

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           ++  + F EM  LGL PD VT  ++L AC   G +D+    F  +  K  V
Sbjct: 645 QQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGV 695


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/703 (31%), Positives = 366/703 (52%), Gaps = 98/703 (13%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+HFYA  GK+   R +FD+M  R+++SW +L                       
Sbjct: 158 FVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSL----------------------- 194

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                   I G++    ++EA+ +F  M +   EP   T V A++ACA+L DL  GK++ 
Sbjct: 195 --------INGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVC 246

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +    +  N  V NAL DMY K G++   R +FD  +++NLV +N ++S Y+++G   
Sbjct: 247 NLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAG 306

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTG------------------RIDD------ 275
           + + +  EM   G  PD+VT+ + + AC Q G                  R+D+      
Sbjct: 307 EVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAII 366

Query: 276 -----------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN------------ 312
                      A ++F  +  K  V W ++I G  ++G+ E AL +F             
Sbjct: 367 DMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNT 426

Query: 313 -------------------EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
                              EM ++ ++ D+ ++  + S+C  L +L   + ++       
Sbjct: 427 MIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKND 486

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+ + +AL+DM+ +CG   +A  VF  M  R+V +W + I   A  G    A+ L+D
Sbjct: 487 IHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFD 546

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L++++K D F FV++L+A  H    ++G+  F ++  +HG++P + HY CM++LLGR+
Sbjct: 547 EMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRA 606

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A DL+KS+P KPN +IW + L+ C    +++    A   + +L P   G +++LS
Sbjct: 607 GLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLS 666

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+ G+W DVA +R  MK K  +K A  S IE+   + +F S D +H E   I   L 
Sbjct: 667 NIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQ 726

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           ++  ++ + G+ P+T  VL D  E+EK   +  HSEKLA+AY LI    G+ PIR++KN+
Sbjct: 727 EINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGI-PIRVVKNL 785

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+C DCH F K  S + GR I +RD+NR+H F  G CSC+D W
Sbjct: 786 RMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 200/410 (48%), Gaps = 45/410 (10%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV-----SYNTAIA 129
           L   + L   M  + + + N L++A  + G+ + L    +     +       + NT I 
Sbjct: 35  LIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIR 94

Query: 130 GFANKGFSREALQVFSRMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           G+A  G  +EA+ ++  M       P ++T    L+AC++++    G Q+HG +V   L 
Sbjct: 95  GYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLV 154

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            ++FV N+L   YA  G++D  R +FD M  RN+VSW  +I+GY      K+ + LF EM
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEM 214

Query: 249 QLLGLNPDEVTVSNILGAC-----------------------------------FQTGRI 273
             +G+ P+ VT+   + AC                                    + G +
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
                +F    +K+ V + T++  Y Q+G   + L++ +EML +  RPDK ++ S +++C
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAAC 334

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           A+L  L  G+  H      G++    +S+A+IDMY KCG  + A  VF+ M  + VV+WN
Sbjct: 335 AQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWN 394

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           S+I G  ++G+   AL ++ ++ + NL     ++ +++ A + A +FE  
Sbjct: 395 SLIAGLVRDGELELALRIFGEMPESNL----VSWNTMIGAMVQASMFEEA 440



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 109/450 (24%), Positives = 198/450 (44%), Gaps = 75/450 (16%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF-----D 215
           S+L  C  L++L   KQ+H  +    L   VF  N L     + G  +   +       D
Sbjct: 27  SSLQTCKTLIEL---KQLHCNM----LKKGVFNINKLIAACVQMGTHESLNYALNAFKED 79

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQT---- 270
                +L + N +I GY  +G  K+ I ++  M + +G+ PD  T   +L AC +     
Sbjct: 80  EGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFS 139

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          G++D   ++F  + E++ V WT++I GY+
Sbjct: 140 EGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYS 199

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
                ++A+ LF EM+   V P+  ++   +S+CAKL  L  G+ V      LGV  + L
Sbjct: 200 VVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTL 259

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           V +AL+DMY KCG       +F+    +N+V +N++++ Y Q+G   E L + D++LQ+ 
Sbjct: 260 VVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKG 319

Query: 420 LKPDSFTFVSVLSACL-----------HADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
            +PD  T +S ++AC            HA +F  G    D+IS              +I+
Sbjct: 320 QRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNA------------IID 367

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +  +    + A  +  S+ +K   + W++L++     G++   E+A R   E+   N   
Sbjct: 368 MYMKCGKREAACKVFDSMSNK-TVVTWNSLIAGLVRDGEL---ELALRIFGEMPESNLVS 423

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           +  +         +E+   +   M+++ +K
Sbjct: 424 WNTMIGAMVQASMFEEAIDLLREMQNQGIK 453



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 167/367 (45%), Gaps = 44/367 (11%)

Query: 234 KNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-- 289
           KN   + C  L +  QL    L      ++ ++ AC Q G  +      +  KE +    
Sbjct: 25  KNSSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFKEDEGTKC 84

Query: 290 ---CWTTMIVGYTQNGKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                 T+I GY  +G  ++A+ ++  M+    + PD F+   ++S+C+K+ +   G  V
Sbjct: 85  SLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQV 144

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG  V +G+  DL V+++LI  Y  CG  D    VF+ M  RNVVSW S+INGY+     
Sbjct: 145 HGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMA 204

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL----- 460
            EA+ L+ ++++  ++P+  T V  +SAC      E G+   + ++ +   + +L     
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNAL 264

Query: 461 --------DHYA-------------CMINLL-------GRSSDVDKAVDLIKSLPHKPNS 492
                   D YA              M N +       G + +V   +D +     +P+ 
Sbjct: 265 LDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDK 324

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFE--LEPINAGPYIMLSNMYAACGRWEDVASIRS 550
           +   + ++ CA  GD+  G+ +  ++F   LE ++     ++ +MY  CG+ E    +  
Sbjct: 325 VTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAII-DMYMKCGKREAACKVFD 383

Query: 551 SMKSKNV 557
           SM +K V
Sbjct: 384 SMSNKTV 390



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/330 (24%), Positives = 148/330 (44%), Gaps = 9/330 (2%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D +  +GQ   +      +  C ++ D+ + K   +++  N  E     + N ++  Y 
Sbjct: 312 LDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLE-RLDNISNAIIDMYM 370

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K GK   A  +FD M  + +++WN+L++   R G ++    +F +MP  + VS+NT I  
Sbjct: 371 KCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGA 430

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
                   EA+ +   MQ    +    T V   +AC  L  L   K I+  I   ++  +
Sbjct: 431 MVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHID 490

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           + +  AL DM+++ G+   A  +F+ M  R++ +W   I      G  K  I+LF EM  
Sbjct: 491 MQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLK 550

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEE 305
             +  D+     +L A    G +D   +LF  +++   V      +  M+    + G  E
Sbjct: 551 QDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLE 610

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           +A   F+ M S  ++P+     S +++C K
Sbjct: 611 EA---FDLMKSMPIKPNDVIWGSFLAACRK 637


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/682 (33%), Positives = 366/682 (53%), Gaps = 54/682 (7%)

Query: 17   RGQAATEEAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGK 74
            R + A    YT   L   C+   +++L K + + M  N  + +   L N +L  Y K   
Sbjct: 382  RAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVV-LGNSILDLYLKCKV 440

Query: 75   LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
              YA  +F+ M   D++SWN ++SA+ R+G V+    +F ++P +D VS+NT + G    
Sbjct: 441  FEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQF 500

Query: 135  GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
            G+ R+AL+    M +   E +  T   AL   + L  +  G+Q+HG ++      + F+R
Sbjct: 501  GYERQALEQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIR 560

Query: 195  NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
            ++L +MY K G          RM+N ++V  ++ +  +LKNG               G+ 
Sbjct: 561  SSLVEMYCKCG----------RMDNASIVLKDVPLD-FLKNGNA-------------GVT 596

Query: 255  PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
              E+                          +   V W  M+ GY  NGK ED L  F  M
Sbjct: 597  CKEL--------------------------KAGIVSWGLMVSGYVWNGKYEDGLKTFRLM 630

Query: 315  LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            + E V  D  ++++++S+CA    L  G+ VH     +G   D  V S+LIDMY K G  
Sbjct: 631  VRELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSL 690

Query: 375  DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            DDAWT+F      N+V W SMI+G A +GQ  +A+ L++++L + + P+  TF+ VL+AC
Sbjct: 691  DDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNAC 750

Query: 435  LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
             HA L E G  +F  +   + I P ++H   M++L GR+  + +  + I        + +
Sbjct: 751  CHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSV 810

Query: 495  WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
            W + LS C +  +++ G+  +  L ++ P + G Y++LSNM A+  RW++ A +RS M  
Sbjct: 811  WKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQ 870

Query: 555  KNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHD 614
            + +KK    SWI++ +++H F+  DR+HP+ E IY  L  LI +L+E G+S + KLV+ D
Sbjct: 871  RGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQD 930

Query: 615  TQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTI 674
             +EE+    I +HSEKLA+ + +I   +  TPIRI+KN+R+C DCH F+K+AS ++ R I
Sbjct: 931  VEEEQGEVLISHHSEKLAVVFGIINTANR-TPIRIIKNLRICTDCHNFIKYASQLLDREI 989

Query: 675  ILRDSNRFHHFVGGNCSCKDNW 696
            ILRD +RFHHF  G CSC D W
Sbjct: 990  ILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 219/459 (47%), Gaps = 62/459 (13%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L+ + S N LL+ + +S ++   R LFD++P R++ ++   I+GF+  G S    ++F  
Sbjct: 321 LQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFRE 380

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+     P  YT  S    C+  ++L+ GK +H  ++   +  +V + N++ D+Y K   
Sbjct: 381 MRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKV 440

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            + A  +F+ MN  ++VSWN+MIS YL+ G  +K +D+F+ +                  
Sbjct: 441 FEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPY---------------- 484

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                              KD V W T++ G  Q G E  AL     M+         + 
Sbjct: 485 -------------------KDVVSWNTIVDGLMQFGYERQALEQLYCMVECGTEFSVVTF 525

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP- 385
           S  +   + L+ +  G+ +HG  +  G   D  + S+L++MYCKCG  D+A  V   +P 
Sbjct: 526 SIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPL 585

Query: 386 ---------------TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
                             +VSW  M++GY  NG+  + L  +  +++E +  D  T  ++
Sbjct: 586 DFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTI 645

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPH 488
           +SAC +A + E G+ H  + +  H I   +D Y  + +I++  +S  +D A  + +   +
Sbjct: 646 ISACANAGILEFGR-HVHAYN--HKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQ-TN 701

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +PN + W++++S CA+ G  K     A  LFE E +N G
Sbjct: 702 EPNIVFWTSMISGCALHGQGKQ----AICLFE-EMLNQG 735



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 50/221 (22%)

Query: 324 FSISSV------VSSCAKLASLYHGQV---------VHGKAVVLGVDDDLLVSSALIDMY 368
           FS+SS       + SC    SL+H  +         +H  +V  G    L  ++ L+ +Y
Sbjct: 279 FSVSSYFYPPLWLQSC----SLFHSTISNGPPPLGTLHALSVKNGSLQTLNSANYLLTLY 334

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            K    D A  +F+ +P RN  +W  +I+G+++ G       L+ ++  +   P+ +T  
Sbjct: 335 VKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGACPNQYTLS 394

Query: 429 SVLSAC-----------LHADLFERGQNH-----------------FDSISAVHGITPSL 460
           S+   C           +HA +   G +                  F+    V  +    
Sbjct: 395 SLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELMNEG 454

Query: 461 D--HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           D   +  MI+   R+ DV+K++D+ + LP+K + + W+T++
Sbjct: 455 DVVSWNIMISAYLRAGDVEKSLDMFRRLPYK-DVVSWNTIV 494


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 359/689 (52%), Gaps = 88/689 (12%)

Query: 49  MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQD 108
           M+   Y PN TF        ++    L  ++        RD+   +A+     ++G +QD
Sbjct: 1   MNSTIYNPNRTF-------NFSPQPPLILSKPFTSCKTPRDLKQLHAIF---IKTGQIQD 50

Query: 109 --------------------LRALFDKMPIRDSVSYNTAIAGFA---NKGFSREALQVFS 145
                                RA+F +MP  +   +NT +   A   ++    EAL +FS
Sbjct: 51  PLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILRVLAETNDEHLQSEALMLFS 110

Query: 146 RMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M  D R +P  +T  S L ACA+   LR GKQIHG IV      + FV + L  MY   
Sbjct: 111 AMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMC 170

Query: 205 GEIDKARWLF----------------DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
             ++ A  LF                 R  + N+V WN+MI G ++ G  K   +LF EM
Sbjct: 171 AVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM 230

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                               ++  V W  MI GY QNG   +A+
Sbjct: 231 -----------------------------------PQRSVVSWNVMISGYAQNGHFIEAI 255

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            LF EM S ++ P+  ++ SV+ + A++ +L  G+ +H  A    ++ D ++ SAL+DMY
Sbjct: 256 NLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMY 315

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            KCG  D+A  VF  +P RN ++W+++I  +A +G+  +A+  +  + +  + P+   ++
Sbjct: 316 SKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYI 375

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
            +LSAC HA L E G++ F  +  V G+ P ++HY CM++LLGR+  +++A +LI+++P 
Sbjct: 376 GILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPI 435

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +P+ +IW  LL  C M  ++K GE  A  L EL P ++G Y+ LSN+YA+ G WE VA +
Sbjct: 436 EPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARV 495

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
           R  MK  +++K    SWIEI   +H+F+ ED +H + + I   L ++  KL+  G+ PNT
Sbjct: 496 RLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNT 555

Query: 609 KLVLHDTQEEEKVKSICYHSEKLALAYCLIKK-PHGVTPIRIMKNIRVCGDCHLFMKFAS 667
             V  +T E+E+ +++ YHSEK+A+A+ LI   P    P++I+KN+R+C DCH  +K  S
Sbjct: 556 LEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQ--HPLKIVKNLRICEDCHASLKLIS 613

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I  R II+RD  RFH F  G+CSC D W
Sbjct: 614 LIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 61/339 (17%)

Query: 20  AATEEAYTQL---VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           A  E+AY+     V+D      +EL KR Q              L N ++    + G + 
Sbjct: 171 AVMEDAYSLFCKNVVDFDGSCQMELDKRKQD---------GNVVLWNIMIDGQVRLGDIK 221

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A++LFD+MP R ++SWN ++S                               G+A  G 
Sbjct: 222 SAKNLFDEMPQRSVVSWNVMIS-------------------------------GYAQNGH 250

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH-----GKIVVGNLGGNV 191
             EA+ +F  MQ    +P   T VS L A A++  L  GK IH      KI + ++ G  
Sbjct: 251 FIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG-- 308

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
              +AL DMY+K G ID+A  +F+ +  RN ++W+ +I  +  +G+ +  I  F  M   
Sbjct: 309 ---SALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLF-HVIK----EKDNVCWTTMIVGYTQNGKEED 306
           G+ P++V    IL AC   G +++    F H++K    +     +  M+    + G  E+
Sbjct: 366 GVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEE 425

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           A  L   M    + PD     +++ +C    +L  G+ V
Sbjct: 426 AEELIRNM---PIEPDDVIWKALLGACKMHKNLKMGERV 461


>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 767

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 333/603 (55%), Gaps = 68/603 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   N LL+ +A+   + +   LFD M   +++V++ + + G++  GF+ +A++ F  +
Sbjct: 160 DVNVVNGLLAMYAQCKRISEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDL 219

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           ++D  +   YT  S L ACA +   R G Q+HG IV      N++V++AL DMYAK  ++
Sbjct: 220 RRDGNQSNQYTFPSVLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAKCRDL 279

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR L + M   ++VSWN MI G ++ G  ++ + +F  M    +  D+ T+ +IL  C
Sbjct: 280 ESARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILN-C 338

Query: 268 FQTGR-------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           F + R                         +D A ++F  + EKD + WT ++ G T NG
Sbjct: 339 FASSRTEMKIASSAHCLIVKPGMRLTSLGIMDSALKVFEGMIEKDVISWTALVTGNTHNG 398

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             E+AL LF  M    + PD+   +SV+S+ A+L  L  GQ VHG  +  G    L V++
Sbjct: 399 FYEEALKLFCNMRVGGIYPDQIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNN 458

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           +L+ MY KCG  +DA  +FN M  R++++W  +I G                        
Sbjct: 459 SLVTMYTKCGSLEDANVIFNSMEIRDLITWTCIIVG------------------------ 494

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
                           L E  Q +FDS+  V+GITP  +HYACMI+L GRS D  KA +L
Sbjct: 495 ----------------LIEEAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKAEEL 538

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           +  +  +P++ +W  +L+     G+I++GE AA+ L +LEP NA PY++LSNMY+A GR 
Sbjct: 539 LHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMKLEPNNAVPYVLLSNMYSAAGRQ 598

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           ++ A++R  MKS+N+ K    SW+E   KVH F+SEDR HP    IY ++ +++  ++EA
Sbjct: 599 DEAANVRRLMKSRNINKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIYSKVDEMMLLIKEA 658

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+  +    LHD  +E K   + YHSEKLA+A+ L+  P G  PIRI+KN+RVCGDCH  
Sbjct: 659 GYLADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSG-APIRIIKNLRVCGDCHSA 717

Query: 663 MKF 665
           MK 
Sbjct: 718 MKL 720



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 154/318 (48%), Gaps = 38/318 (11%)

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N L    +K G +D+AR +FD+M  R+  +WN MI  Y                      
Sbjct: 33  NLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAY---------------------- 70

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                 SN       + R+ DA +LF     K+ + W  +I GY ++G + +A  LF EM
Sbjct: 71  ------SN-------SRRLADAEQLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEM 117

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
            S+ ++P+++++ SV+  C  L  L  G+ +HG  +  G D D+ V + L+ MY +C   
Sbjct: 118 QSDGIKPNEYTLGSVLRMCTSLLLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRI 177

Query: 375 DDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            +A  +F+ M   +N V+W SM+ GY+QNG   +A+  +  L ++  + + +TF SVL+A
Sbjct: 178 SEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTA 237

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C        G      I    G   ++   + +I++  +  D++ A  L++ +    + +
Sbjct: 238 CASVSACRVGVQVHGCI-VKSGFKTNIYVQSALIDMYAKCRDLESARALLEGM-EVDDVV 295

Query: 494 IWSTLLSVCAMKGDIKHG 511
            W++++  C  +G I+  
Sbjct: 296 SWNSMIVGCVRQGLIEEA 313



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 141/351 (40%), Gaps = 67/351 (19%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  + +  +  ++  C  V+   +  ++   +  + ++ N  ++ + L+  YAK   L  
Sbjct: 223 GNQSNQYTFPSVLTACASVSACRVGVQVHGCIVKSGFKTNI-YVQSALIDMYAKCRDLES 281

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD----------------S 121
           AR L + M + D++SWN+++    R G +++  ++F +M  RD                S
Sbjct: 282 ARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILNCFAS 341

Query: 122 VSYNTAIAGFA------------NKGFSREALQVFSRM-QKDRFE--------------- 153
                 IA  A            + G    AL+VF  M +KD                  
Sbjct: 342 SRTEMKIASSAHCLIVKPGMRLTSLGIMDSALKVFEGMIEKDVISWTALVTGNTHNGFYE 401

Query: 154 ---------------PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
                          P      S L+A A+L  L  G+Q+HG  +      ++ V N+L 
Sbjct: 402 EALKLFCNMRVGGIYPDQIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLV 461

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDE 257
            MY K G ++ A  +F+ M  R+L++W  +I G ++  Q       F  M+ + G+ P  
Sbjct: 462 TMYTKCGSLEDANVIFNSMEIRDLITWTCIIVGLIEEAQ-----RYFDSMRTVYGITPGP 516

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDA 307
              + ++    ++G    A  L H ++ E D   W  ++    ++G  E+ 
Sbjct: 517 EHYACMIDLFGRSGDFVKAEELLHQMEVEPDATVWKAILAASRKHGNIENG 567



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 14/172 (8%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P++  ++N L+  Y K G L  A  +F+ M +RD+I+W  ++      G +++ +  FD 
Sbjct: 451 PSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCII-----VGLIEEAQRYFDS 505

Query: 116 MPIRDSVS-----YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           M     ++     Y   I  F   G   +A ++  +M+    EP      + L A  +  
Sbjct: 506 MRTVYGITPGPEHYACMIDLFGRSGDFVKAEELLHQME---VEPDATVWKAILAASRKHG 562

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++  G++   K ++     N      L++MY+  G  D+A  +   M +RN+
Sbjct: 563 NIENGERA-AKTLMKLEPNNAVPYVLLSNMYSAAGRQDEAANVRRLMKSRNI 613


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/523 (38%), Positives = 307/523 (58%), Gaps = 37/523 (7%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACF 268
           A  +F+++   N+ +WN MI G+ ++  P   ++LF +M     + PD  T   +  A  
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
           +                                    G  + A ++F ++  +D V W +
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNS 207

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I G+  NG   +AL L+ EM SE V PD F++ S++S+C +L +L  G+ VH   V +G
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  +   S+AL+D+Y KCG   DA  VF+ M  R+VVSW S+I G A NG   EAL L+ 
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFG 327

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +L ++ LKP   TFV VL AC H  + + G N+F  +   +GI P ++H+ CM++LL R+
Sbjct: 328 ELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRA 387

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             V  A D I+++P  PN++IW TLL  C + G ++ GE+A   +  LE  ++G +++LS
Sbjct: 388 GKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLS 447

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+YA+  RW DV ++R  M  K VKK   YS +E+ N+V++F+  DR+HP++E  Y  L+
Sbjct: 448 NLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLA 507

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           K+ + L+  G+ P T  VL D +EEEK  ++ +H+EK+A+A+ L+  P G TPIRIMKN+
Sbjct: 508 KITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPG-TPIRIMKNL 566

Query: 654 RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RVC DCHL +K  S +  R II+RD +RFHHF  G+CSCKD W
Sbjct: 567 RVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 47/361 (13%)

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F+K  +  ++S +A +S  A+         +F+++   +  ++NT I GFA       A+
Sbjct: 70  FNKHLIFALVSLSAPMSFAAQ---------IFNQIQAPNIFTWNTMIRGFAESENPSPAV 120

Query: 142 QVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           ++FS+M       P  +T      A A+L+D+  G+ IH  +V        FV+N+L  M
Sbjct: 121 ELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHM 180

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y+  G  + A  +F+ M+ R+ V+WN +I+G+  NG P + + L++EM   G+ PD  T+
Sbjct: 181 YSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTM 240

Query: 261 SNILGACFQTGRI-----------------------------------DDAGRLFHVIKE 285
            ++L AC + G +                                    DA ++F  ++E
Sbjct: 241 VSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEE 300

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QV 344
           +  V WT++IVG   NG   +AL LF E+  + ++P + +   V+ +C+    L  G   
Sbjct: 301 RSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNY 360

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNG 403
                   G+   +     ++D+ C+ G   DA+     MP   N V W +++     +G
Sbjct: 361 FRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHG 420

Query: 404 Q 404
            
Sbjct: 421 H 421



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 8/260 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  ++  G  +    +F+ M  RD V++N+ I GFA  G   EAL ++  M  +  E
Sbjct: 175 NSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVE 234

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T VS L+AC +L  L  G+++H  +V   L  N    NAL D+Y+K G    A+ +
Sbjct: 235 PDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKV 294

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R++VSW  +I G   NG   + + LF E++  GL P E+T   +L AC   G +
Sbjct: 295 FDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGML 354

Query: 274 DDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+    F  +KE+  +         M+    + GK  DA   ++ + +  V P+     +
Sbjct: 355 DEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIWRT 411

Query: 329 VVSSCAKLASLYHGQVVHGK 348
           ++ +C     L  G+V   +
Sbjct: 412 LLGACTIHGHLELGEVARAE 431



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 97/245 (39%), Gaps = 61/245 (24%)

Query: 13  TLYSR--GQAATEEAYTQLVL--DCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           TLY     +    + +T + L   C  +  + L +R+  +M +           N LL  
Sbjct: 223 TLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYM-VKVGLVQNQHASNALLDL 281

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K G    A+ +FD+M  R ++SW +L                               I
Sbjct: 282 YSKCGNFRDAQKVFDEMEERSVVSWTSL-------------------------------I 310

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLD-----LRRGKQIHGK 181
            G A  G   EAL++F  +++   +P++ T V  L AC+   +LD      RR K+ +G 
Sbjct: 311 VGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGI 370

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR----NLVSWNLM-----ISGY 232
           +        +     + D+  + G++  A   +D + N     N V W  +     I G+
Sbjct: 371 L------PRIEHHGCMVDLLCRAGKVGDA---YDYIRNMPVPPNAVIWRTLLGACTIHGH 421

Query: 233 LKNGQ 237
           L+ G+
Sbjct: 422 LELGE 426


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/529 (38%), Positives = 299/529 (56%), Gaps = 38/529 (7%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G++  AR LFD M+      WN ++ GY+KNG P K + ++ +M+ LG+ PD  T   ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 265 GACFQT-----------------------------------GRIDDAGRLFHVIKEKDNV 289
            AC +                                    G +  A  LF  + E+D V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W  +I    Q G    AL  F EM    ++PD  +I S +S+C  L  L  G+ ++  A
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
              G+D +++V +A +DM  KCG  D A  +F+ MP RNV+SW+++I GYA NG+  +AL
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV--HGITPSLDHYACMI 467
           AL+ ++  + ++P+  TF++VLSAC H      G  +F+ ++      I P  +HYACM+
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGRS  +++A + IK +P + +  IW  LL  CA+  +IK G+  A  LFEL P  A 
Sbjct: 383 DLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIAS 442

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            +++LSNMYAA GRW  V  +R  MK K  +K AAYS +E + ++H     D++HP++  
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I  +L  L+K+++  G+ P T  V HD ++EEK  ++  HSEKLA+A+ LI       PI
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKF-PI 561

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+MKN+R+CGDCH F K  S I  R II+RD NRFHHF  G CSCKD W
Sbjct: 562 RVMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 44/323 (13%)

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           G +   R LFD+M       +NT + G+   G   +A+ V+ +M+     P  +T    +
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
            ACA+L +L  G  +HG +V   L     VR  L  MY K GE+  A +LF  M  R+LV
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-----CFQTGR------ 272
           +WN +I+  ++ G   K +  F+EM + G+ PD VT+ + L A     C +TG       
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 273 ------------------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                                   +D A  LF  + +++ + W+T+I GY  NG+ E AL
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS------S 362
            LF+ M ++ V+P+  +  +V+S+C+    +  G         +   DD  +       +
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFN---FMAQSDDKNIQPRKEHYA 379

Query: 363 ALIDMYCKCGVTDDAWTVFNMMP 385
            ++D+  + G  ++A+    +MP
Sbjct: 380 CMVDLLGRSGHLEEAYNFIKIMP 402



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 107/193 (55%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  + + G +     LF  M  RD V++N  IA     GFS +ALQ F  M     +P 
Sbjct: 176 LMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPD 235

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             T VSAL+AC  L  L  G++I+       +  N+ V NA  DM AK G++DKA  LFD
Sbjct: 236 SVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFD 295

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M  RN++SW+ +I GY  NG+ +K + LF  M+  G+ P+ VT   +L AC  TGR+++
Sbjct: 296 EMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNE 355

Query: 276 AGRLFHVIKEKDN 288
             + F+ + + D+
Sbjct: 356 GWQYFNFMAQSDD 368



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +II  NA L   A+ G +     LFD+MP R+ +S++T I G+A  G S +AL +FSRM+
Sbjct: 270 NIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMK 329

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
               +P   T ++ L+AC+    +  G Q
Sbjct: 330 NQGVQPNYVTFLAVLSACSHTGRVNEGWQ 358



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           +HN  L   AK G +  A +LFD+MP R++ISW+ ++  +A +G  +   ALF +M  + 
Sbjct: 273 VHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQG 332

Query: 120 ---DSVSYNTAIAGFANKGFSREALQVFSRMQK 149
              + V++   ++  ++ G   E  Q F+ M +
Sbjct: 333 VQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQ 365


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/576 (35%), Positives = 332/576 (57%), Gaps = 38/576 (6%)

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T+V  L  CA    L  GK++H  +V      +  + N L +MY K G I +AR +FD++
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 218 NNRN--LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-----QT 270
             +N  ++SWN +I  Y +NG  K+ + LF+ M L G+  ++VT+ N + AC      + 
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 271 GRI------------------------------DDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
           GRI                              D A  +F  +  K+ V W  M+  Y+Q
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           N + + A+ +F  M  E V+PD  +  +++ +CA LA+   G++VH      G+  D+ +
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +A++  Y KCG  D+A  +F+ +  +N V+W++++  YAQNG + EA+ LY +++Q  L
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           + +  TF+ +L AC HA     G ++F S+    G+ P  +HY  +I+LLGRS  +  + 
Sbjct: 326 EVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSE 385

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           DLI S+P++P+S  W  LL  C M GD+  G   A  ++EL+P ++GPYI+LSN+Y++ G
Sbjct: 386 DLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTG 445

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           R ++    R +M+ + + K    S IE+ ++VH+F++  + HP+   I+ E+ +L  +++
Sbjct: 446 RMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVK 505

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           EAG+  + + VL D +EEEK + + YHSE+LA+A+ LI  P G T + I+KN+RVC DCH
Sbjct: 506 EAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPG-TALHIVKNLRVCFDCH 564

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             +K  S ++GR I++RD+ RFHHF  G CSC D W
Sbjct: 565 AAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 176/379 (46%), Gaps = 50/379 (13%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR--DSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           N L+  + + G + + R++FD++  +  D +S+N  I  +   G  +EAL +F  M  + 
Sbjct: 63  NLLIEMYGKCGGIAEARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEG 122

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
                 T ++A++ACA L     G+ +H   V   L  +  V  +L +M+ K   +D AR
Sbjct: 123 VIANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAAR 182

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--- 268
            +FD +  +NLV+WN M++ Y +N Q KK I +F+ M L G+ PD VT   I+ AC    
Sbjct: 183 AVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALA 242

Query: 269 --------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + GR+D+A  +F  + +K+ V W+ ++ 
Sbjct: 243 AHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILA 302

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            Y QNG E +A+ L++EM+   +  +  +   ++ +C+     + G+ + G    + +  
Sbjct: 303 AYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACS-----HAGRSMDGVDYFVSMIR 357

Query: 357 DLLVSSA------LIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEAL 409
           D  V         LID+  + G    +  + N MP   +  +W +++     +G D++  
Sbjct: 358 DFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHG-DVDRG 416

Query: 410 ALYDKLLQENLKPDSFTFV 428
           A   +L+ E    DS  ++
Sbjct: 417 ARIAELIYELDPEDSGPYI 435



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 110/210 (52%), Gaps = 1/210 (0%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           + G++ +A  + DK    D +   +L++   +  +V   RA+FD +P ++ V++N  +A 
Sbjct: 144 EEGRIVHAIAV-DKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAV 202

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           ++     ++A+QVF  M  +  +P   T ++ ++ACA L     G+ +H  I    +  +
Sbjct: 203 YSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMD 262

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V +  A+   Y K G +D AR +FD +  +N V+W+ +++ Y +NG   + I+L+ EM  
Sbjct: 263 VALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQ 322

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
            GL  + +T   +L AC   GR  D    F
Sbjct: 323 GGLEVNGITFLGLLFACSHAGRSMDGVDYF 352



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 87/232 (37%), Gaps = 64/232 (27%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P    L   ++HFY K G+L  AR +FD +  ++ ++W+A+L+A                
Sbjct: 260 PMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAA---------------- 303

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                          +A  G+  EA++++  M +   E    T +  L AC+       G
Sbjct: 304 ---------------YAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHA-----G 343

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           + + G         + FV      M    G +     +F+   N        +I    ++
Sbjct: 344 RSMDGV--------DYFV-----SMIRDFGVVP----VFEHYLN--------LIDLLGRS 378

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD 287
           GQ +   DL   M      PD      +LGAC   G +D   R+  +I E D
Sbjct: 379 GQLQLSEDLINSMP---YEPDSSAWLALLGACRMHGDVDRGARIAELIYELD 427


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/626 (34%), Positives = 351/626 (56%), Gaps = 53/626 (8%)

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++++ I  + +      +   F+ M+     P  +   S L A   L   +    +H   
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 183 VVGNLGGNVFVRNALTDMYAK-------------GGE--IDKARWLFDRMNNRNLVSWNL 227
           V   L  ++++ NAL + YAK              GE  ID  + +FD M  R++VSWN 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNIL----------------GACFQT 270
           +I+G+ +NG   + +D+ +EM   G L PD  T+S+IL                G   + 
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 271 G-------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G                   R++ + R F+++  KD + W ++I G  QNG+ +  L  F
Sbjct: 257 GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFF 316

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML E+V+P   S SSV+ +CA L +L  G+ +HG  V LG DD+  ++S+L+DMY KC
Sbjct: 317 RRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKC 376

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G    A  VF+ +  R++V+W ++I G A +G  L+A++L++ +L++ ++P    F++VL
Sbjct: 377 GNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVL 436

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP 490
           +AC HA L + G  +F+S+    GI P L+HYA + +LLGR+  +++A D I ++   +P
Sbjct: 437 TACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQP 496

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
              +WS LL+ C     ++  E     L  ++  N G Y+++SN+Y+A  RW+D A +R 
Sbjct: 497 TGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRI 556

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M+ K +KK  A SWIE+ N+VH F++ D++HP  + I + L  L++++++ G+  +T  
Sbjct: 557 HMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQ 616

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           VLHD  EE K + +  HSE+LA+AY +I    G T IR++KNIRVC DCH  +KF + I+
Sbjct: 617 VLHDVDEELKRELLHNHSERLAIAYGIISTTAGTT-IRVIKNIRVCADCHTAIKFITKIV 675

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR I +RD++RFHHF  G+CSC D W
Sbjct: 676 GREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 193/406 (47%), Gaps = 63/406 (15%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           ++ N L++ YAK      A  +FD  P R              SG +  ++ +FD MP+R
Sbjct: 146 YIANALINTYAK---FHNAGKVFDVFPKR------------GESG-IDCVKKVFDMMPVR 189

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQI 178
           D VS+NT IAGFA  G   EAL +   M K+ + +P  +T  S L   A+ +D+ +GK+I
Sbjct: 190 DVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEI 249

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           HG  V     G+VF+ ++L DMYAK   ++ +   F  +  ++ +SWN +I+G ++NG+ 
Sbjct: 250 HGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEF 309

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------------- 267
            + +  F+ M    + P  V+ S+++ AC                               
Sbjct: 310 DRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSL 369

Query: 268 ----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                + G I  A  +F  I ++D V WT +I+G   +G   DA+ LF  ML + VRP  
Sbjct: 370 VDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCY 429

Query: 324 FSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
            +  +V+++C+    +  G +  +      G+   L   +A+ D+  + G  ++A+   +
Sbjct: 430 VAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFIS 489

Query: 383 MM----PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
            M    PT +V  W+ ++     +    +++ L +K+L + L  DS
Sbjct: 490 NMRGVQPTGSV--WSILLAACRAH----KSVELAEKVLDKLLSVDS 529


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 335/592 (56%), Gaps = 49/592 (8%)

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
            QV+S +Q   F  +  T VS  +A            IH +++      + F+ + L  M
Sbjct: 59  FQVYSIVQSLVFAISSCTSVSYCSA------------IHARVIKSLNYSDGFIGDRLVSM 106

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVT 259
           Y K G  + A+ LFD M N++LVSWN ++SG    G    C++ F  M+   G  P+EVT
Sbjct: 107 YFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVT 166

Query: 260 VSNILGACFQTGRIDD-----------------------------------AGRLFHVIK 284
           + +++ AC   G +D+                                   A +LF  + 
Sbjct: 167 LLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 226

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +  V W +M+V +  NG  E  + LFN M    + PD+ ++ +++ +C         + 
Sbjct: 227 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 286

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H      G + D+++++AL+++Y K G  + +  +F  +  R+ ++W +M+ GYA +  
Sbjct: 287 IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHAC 346

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EA+ L+D +++E ++ D  TF  +LSAC H+ L E G+ +F+ +S V+ + P LDHY+
Sbjct: 347 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYS 406

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
           CM++LLGRS  ++ A +LIKS+P +P+S +W  LL  C + G+++ G+  A  L  L+P 
Sbjct: 407 CMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPS 466

Query: 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
           +   YIMLSN+Y+A G W D + +R+ MK + + +    S+IE  NK+H+FV  D+ HP 
Sbjct: 467 DHRNYIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPR 526

Query: 585 TEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV 644
           ++ I+ +L +LI+K++EAG +P T+ VLHD  EE KV  I  HSEKLA+A+ L+    GV
Sbjct: 527 SDEIHTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGV 586

Query: 645 TPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            P+ I KN+R+CGDCH   KFAS +  RTII+RDS RFHHF  G CSC+D W
Sbjct: 587 -PLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 169/332 (50%), Gaps = 47/332 (14%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EP 154
           L+S + + G  +D + LFD+MP +D VS+N+ ++G + +G+    L  F RM+ +   +P
Sbjct: 103 LVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 162

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            + T +S ++ACA +  L  GK +HG +V   + G   V N+L +MY K G +D A  LF
Sbjct: 163 NEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 222

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---- 270
           + M  R+LVSWN M+  +  NG  +K +DLF  M+  G+NPD+ T+  +L AC  T    
Sbjct: 223 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 282

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          GR++ +  +F  IK++D + WT M+ GY 
Sbjct: 283 QAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYA 342

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK------AVVLG 353
            +    +A+ LF+ M+ E V  D  + + ++S+C+     + G V  GK      + V  
Sbjct: 343 VHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS-----HSGLVEEGKKYFEIMSEVYR 397

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           V+  L   S ++D+  + G  +DA+ +   MP
Sbjct: 398 VEPRLDHYSCMVDLLGRSGRLEDAYELIKSMP 429



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 150/305 (49%), Gaps = 17/305 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + + G +     LF++MP+R  VS+N+ +    + G++ + + +F+ M++    
Sbjct: 203 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 262

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T V+ L AC      R+ + IH  I       ++ +  AL ++YAK G ++ +  +
Sbjct: 263 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 322

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ + +R+ ++W  M++GY  +   ++ I LF  M   G+  D VT +++L AC  +G +
Sbjct: 323 FEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLV 382

Query: 274 DDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           ++  + F ++ E   V      ++ M+    ++G+ EDA  L   M  E   P      +
Sbjct: 383 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME---PSSGVWGA 439

Query: 329 VVSSCAKLASLYHGQVVHGKAV---VLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           ++ +C       +G V  GK V   +L +D  D      L ++Y   G+  DA  V  +M
Sbjct: 440 LLGACR-----VYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRDASKVRALM 494

Query: 385 PTRNV 389
             R +
Sbjct: 495 KERRL 499



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DII   ALL+ +A+ G +     +F+++  RD +++   +AG+A     REA+++F  M 
Sbjct: 299 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMV 358

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEI 207
           K+  E    T    L+AC+    +  GK+    +  V  +   +   + + D+  + G +
Sbjct: 359 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 418

Query: 208 DKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE----VTV 260
           + A  L   M        W  ++      G     ++L +E+  QLL L+P +    + +
Sbjct: 419 EDAYELIKSMPMEPSSGVWGALLGACRVYGN----VELGKEVAEQLLSLDPSDHRNYIML 474

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEK 286
           SNI  A    G   DA ++  ++KE+
Sbjct: 475 SNIYSA---AGLWRDASKVRALMKER 497


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/675 (33%), Positives = 352/675 (52%), Gaps = 75/675 (11%)

Query: 63   NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
            N L+  Y K  +   A  +FD MP R+++SW AL+S H  +G +                
Sbjct: 408  NYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNG-------------- 453

Query: 123  SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                             +L +F+ M +    P ++T  + L AC  L  L +G QIHG  
Sbjct: 454  -----------------SLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFC 496

Query: 183  VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
            +       V V N+L DMY+K G I++A  +F  M  R+L+SWN MI+GY+  G   + +
Sbjct: 497  LKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRAL 556

Query: 243  DLFQEMQLLGLN--PDEVTVSNILGACFQTGRID-------------------------- 274
              F  MQ   +   PDE T++++L AC  TG I                           
Sbjct: 557  ATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSL 616

Query: 275  -----------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                        A + F  IKEK  + W+++I+GY Q G   +A+ LF  +     + D 
Sbjct: 617  VDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDS 676

Query: 324  FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            F +SS++   A  A L  G+ +    V L    +  VS++L+DMY KCG+ D+A   F  
Sbjct: 677  FVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAE 736

Query: 384  MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
            M  ++V+SW  MI GY ++G   +A+++++K+L+ N++PD   +++VLSAC H+ + + G
Sbjct: 737  MQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEG 796

Query: 444  QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
            +  F  +    GI P ++HYAC+++LLGR+  + +A  L+ ++P KPN  IW TLLS+C 
Sbjct: 797  EELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCR 856

Query: 504  MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
            + GDI+ G+   + L  ++  N   Y+M+SN+Y   G W +  + R     K ++K A  
Sbjct: 857  VHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGM 916

Query: 564  SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVK 622
            SW+EI+ +VH F S + +HP T +I E L ++ ++L +E G+    K  LHD  +E K +
Sbjct: 917  SWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYGLKHELHDIDDESKEE 976

Query: 623  SICYHSEKLALAYCLIK---KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
            ++  HSEKLA+   L        G T IR+ KN+RVC DCH F+K  S I     ++RD+
Sbjct: 977  NLRAHSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDA 1035

Query: 680  NRFHHFVGGNCSCKD 694
             RFH F  G CSC D
Sbjct: 1036 VRFHSFEDGCCSCGD 1050



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 124/268 (46%), Gaps = 32/268 (11%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHM-DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           E   T L+  C+    +   K++   +    F+ P++  +   L+  Y K G LF AR  
Sbjct: 573 EFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKA 632

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           FD++  + +ISW++L+  +A+ G               D V                EA+
Sbjct: 633 FDQIKEKTMISWSSLILGYAQEG---------------DFV----------------EAM 661

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
            +F R+Q+   +   +   S +   A    L++GKQ+   +V    G    V N+L DMY
Sbjct: 662 GLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMY 721

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G +D+A   F  M  ++++SW +MI+GY K+G  KK + +F +M    + PDEV   
Sbjct: 722 LKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYL 781

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNV 289
            +L AC  +G I +   LF  + E   +
Sbjct: 782 AVLSACSHSGMIKEGEELFSKLLETQGI 809



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 102/227 (44%), Gaps = 46/227 (20%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N L+  Y K G +  A   F +M L+D+ISW  +++                    
Sbjct: 711 TSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMIT-------------------- 750

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
                      G+   G  ++A+ +F++M +   EP +  +++ L+AC+    ++ G+++
Sbjct: 751 -----------GYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL 799

Query: 179 HGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNG 236
             K++    +   V     + D+  + G + +A+ L D M  + N+  W  ++S    +G
Sbjct: 800 FSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHG 859

Query: 237 QPKKCIDLFQE-----MQLLGLNP-DEVTVSNILGACFQTGRIDDAG 277
                I+L +E     +++ G NP + V +SN+ G   Q G  ++ G
Sbjct: 860 D----IELGKEVGKILLRIDGKNPANYVMMSNLYG---QAGYWNEQG 899


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/487 (40%), Positives = 299/487 (61%), Gaps = 36/487 (7%)

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           A+ LF ++++RNLV    MISGY +                                   
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSR----------------------------------- 26

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            GR++DA  +F  ++EKD VCW+ MI GY ++ K ++AL LF+EM    ++PD+ +I SV
Sbjct: 27  VGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTILSV 86

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           +S+CA+L  L   + +H      G+   L V++ALIDMY KCG    A  VF  M +RNV
Sbjct: 87  ISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNV 146

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           +SW SMIN +A +G    AL  + ++  EN+KP+  TFV VL AC HA L E G+  F S
Sbjct: 147 ISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFAS 206

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           ++  H ITP  +HY CM++L GR++ +  A++L++++P  PN +IW +L++ C + G+ +
Sbjct: 207 MTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHGENE 266

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
            GE AA+ + ELEP + G  + LSN+YA   RW+DV  +R+ MK + + K    S IE++
Sbjct: 267 LGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRIELN 326

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
           N+V++FV  D+ H + + IYE+L +++K+L+  G++PNT+ VL D +EE K + + +HSE
Sbjct: 327 NQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLWHSE 386

Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
           KLAL Y L+ +  G + IRI+KN+RVC DCH F+K  S + G  II+RD  RFHH+  G 
Sbjct: 387 KLALCYGLMGEGKG-SCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKAGV 445

Query: 690 CSCKDNW 696
           CSC D W
Sbjct: 446 CSCNDYW 452



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 162/317 (51%), Gaps = 9/317 (2%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A+ LF K+  R+++   A++S ++R G V+D R +FD+M  +D V ++  I+G+A     
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           +EAL +FS MQ    +P   T +S ++ACA+L  L R K IH  +    LGG + V NAL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMYAK G +  AR +F++M +RN++SW  MI+ +  +G     +  F +M+   + P+ 
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFN 312
           VT   +L AC   G +++  R F  +  + N+      +  M+  + +     DAL L  
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M    + P+     S++++C        G+    + + L  D D  +   L ++Y K  
Sbjct: 242 TM---PLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQ-LSNIYAKDR 297

Query: 373 VTDDAWTVFNMMPTRNV 389
              D   + N+M  R +
Sbjct: 298 RWQDVGELRNLMKQRGI 314



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 112/260 (43%), Gaps = 43/260 (16%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C R+  ++ AK +  ++D N        ++N L+  YAK G L  AR +F+KM  R++IS
Sbjct: 90  CARLGVLDRAKWIHMYVDKNGL-GGALPVNNALIDMYAKCGNLGAARGVFEKMQSRNVIS 148

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W ++++A                               FA  G +  AL+ F +M+ +  
Sbjct: 149 WTSMINA-------------------------------FAIHGDASNALKFFYQMKDENI 177

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           +P   T V  L AC+    +  G++    +    N+         + D++ +   +  A 
Sbjct: 178 KPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDAL 237

Query: 212 WLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGA 266
            L + M    N+V W  +++    +G+ +  +  F   Q+L L PD     V +SNI   
Sbjct: 238 ELVETMPLAPNVVIWGSLMAACQIHGENE--LGEFAAKQVLELEPDHDGALVQLSNIYA- 294

Query: 267 CFQTGRIDDAGRLFHVIKEK 286
             +  R  D G L +++K++
Sbjct: 295 --KDRRWQDVGELRNLMKQR 312


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/655 (34%), Positives = 355/655 (54%), Gaps = 71/655 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F+ +   + + +NT   G A       AL+++  M      P  YT    L +CA+  
Sbjct: 89  SVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSK 148

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS------ 224
             + G+QIHG ++      ++FV  +L  +Y + G ++ AR +FDR  +R++VS      
Sbjct: 149 AFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIK 208

Query: 225 -------------------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                                    WN MISGY + G  K+ ++LF+EM    + PDE T
Sbjct: 209 GYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDEST 268

Query: 260 VSNILGACFQTGRI----------DDAG-------------------------RLFHVIK 284
           +  ++ AC Q+G I          DD G                          LF  + 
Sbjct: 269 MVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLL 328

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD + W T+I GYT     ++AL+LF EML    RP+  ++ S++ +CA L ++  G+ 
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRW 388

Query: 345 VH---GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           +H    K +    +   L +S LIDMY KCG  + A  VFN +  +++ SWN+MI G+A 
Sbjct: 389 IHVYIDKRLKSATNASSLRTS-LIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAM 447

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G+   A  ++ ++ +  ++PD  TFV +LSAC  + + + G++ F +++  + ITP L+
Sbjct: 448 HGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLE 507

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           HY CMI+LLG S    +A ++I ++  +P+ +IW +LL  C ++G+++ GE  A++L ++
Sbjct: 508 HYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKI 567

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           EP N G Y++LSN+YA  GRW +VA IR+ +  K +KK    S IEID+ VH+F+  D+ 
Sbjct: 568 EPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKF 627

Query: 582 HPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKP 641
           HP    IY  L ++   L++AGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI   
Sbjct: 628 HPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTK 687

Query: 642 HGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            G T + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 688 PG-TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 137/495 (27%), Positives = 241/495 (48%), Gaps = 46/495 (9%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G       +  L+  C +    +  +++  H+    Y+ +  F+H  L+  Y ++G
Sbjct: 125 MISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDL-FVHTSLISVYVQNG 183

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           +L  AR +FD+ P RD++S+ AL+  +A  G ++  + LFD++P++D VS+N  I+G+A 
Sbjct: 184 RLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAE 243

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G  +EAL++F  M K    P + T V+ ++ACAQ   +  G+Q+H  I     G N+ +
Sbjct: 244 TGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKI 303

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            N+L D+Y+K GE++ A  LF+ +  ++++SWN +I GY      K+ + LFQEM   G 
Sbjct: 304 VNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 363

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHV-----IKEKDNVC--WTTMIVGYTQNGKEED 306
            P++VT+ +IL AC   G I D GR  HV     +K   N     T++I  Y + G  E 
Sbjct: 364 RPNDVTMLSILPACAHLGAI-DIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEA 422

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV----------LGVDD 356
           A  +FN +L +              S +   ++  G  +HG+A            +G++ 
Sbjct: 423 AHQVFNSILHK--------------SLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEP 468

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSWNSMINGYAQNGQDLEALAL 411
           D +    L+    + G+ D    +F  M      T  +  +  MI+    +G   EA  +
Sbjct: 469 DDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 528

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL- 470
            + +    ++PD   + S+L AC      E G++   ++  +    P    Y  + N+  
Sbjct: 529 INNM---EMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGC--YVLLSNIYA 583

Query: 471 --GRSSDVDKAVDLI 483
             GR ++V K   L+
Sbjct: 584 TAGRWNEVAKIRALL 598



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 139/287 (48%), Gaps = 36/287 (12%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S +L  C  +   D    A  +F  I+E + + W TM  G+  +  
Sbjct: 55  QMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 114

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL L+  M+S  + P+ ++   ++ SCAK  +   GQ +HG  + LG D DL V ++
Sbjct: 115 PVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTS 174

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS----------------------------- 394
           LI +Y + G  +DA  VF+  P R+VVS+ +                             
Sbjct: 175 LISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSW 234

Query: 395 --MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
             MI+GYA+ G   EAL L+ ++++ N++PD  T V+V+SAC  +   E G+     I  
Sbjct: 235 NAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            HG   +L     +++L  +  +++ A  L + L +K + + W+TL+
Sbjct: 295 -HGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYK-DVISWNTLI 339



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 127/275 (46%), Gaps = 42/275 (15%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD------AWTVF 381
           S++ +C  L SL   +++H + +  G+ +     S L+++   C ++        A +VF
Sbjct: 38  SLLHNCKTLQSL---RLIHAQMIKTGLHNTNYALSKLLEL---CVISPHFDGLPYAISVF 91

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             +   N++ WN+M  G+A +   + AL LY  ++   L P+S+TF  +L +C  +  F+
Sbjct: 92  ETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFK 151

Query: 442 RGQNHFDSISAVHGITPSLDH------YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
            GQ        +HG    L +      +  +I++  ++  ++ A  +    PH+ + + +
Sbjct: 152 EGQQ-------IHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHR-DVVSY 203

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKS 554
           + L+   A +G I+    +A+ LF+  P+ +   +  + + YA  G +++   +   M  
Sbjct: 204 TALIKGYASRGYIE----SAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMK 259

Query: 555 KNVKK-----------FAAYSWIEIDNKVHKFVSE 578
            N++             A    IE+  +VH ++ +
Sbjct: 260 TNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDD 294


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/615 (35%), Positives = 332/615 (53%), Gaps = 75/615 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMP-IRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           D+   N LL+ +A+   + +   LF+ M   +++V++ + + G++  GF+ +A++ F  +
Sbjct: 159 DVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDL 218

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +++  +   YT  S L ACA +   R G Q+H  IV      N++V++AL DMYAK  E+
Sbjct: 219 RREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAKCREM 278

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + AR L + M   ++VSWN MI G ++ G   + + +F  M    +  D+ T+ +IL  C
Sbjct: 279 ESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILN-C 337

Query: 268 FQTGR-------------------------------------IDDAGRLFHVIKEKDNVC 290
           F   R                                     +D A ++F  + EKD + 
Sbjct: 338 FALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVIS 397

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WT ++ G T NG  ++AL LF  M    + PDK   +SV+S+ A+L  L  GQ VHG  +
Sbjct: 398 WTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYI 457

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G    L V+++L+ MY KCG  +DA  +FN M  R++++W  +I GYA+NG       
Sbjct: 458 KSGFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNG------- 510

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
                                       L E  Q +FDS+  V+GITP  +HYACMI+L 
Sbjct: 511 ----------------------------LLEDAQRYFDSMRTVYGITPGPEHYACMIDLF 542

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530
           GRS D  K   L+  +  +P++ +W  +L+     G+I++GE AA+ L ELEP NA PY+
Sbjct: 543 GRSGDFVKVEQLLHQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYV 602

Query: 531 MLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYE 590
            LSNMY+A GR ++ A++R  MKS+N+ K    SW+E   KVH F+SEDR HP    IY 
Sbjct: 603 QLSNMYSAAGRQDEAANVRRLMKSRNISKEPGCSWVEEKGKVHSFMSEDRRHPRMVEIYS 662

Query: 591 ELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIM 650
           ++ +++  ++EAG+  +    LHD  +E K   + YHSEKLA+A+ L+  P G  PIRI+
Sbjct: 663 KVDEMMLLIKEAGYFADMSFALHDLDKEGKELGLAYHSEKLAVAFGLLVVPSG-APIRII 721

Query: 651 KNIRVCGDCHLFMKF 665
           KN+RVCGDCH  MK 
Sbjct: 722 KNLRVCGDCHSAMKL 736



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 159/545 (29%), Positives = 259/545 (47%), Gaps = 53/545 (9%)

Query: 54  YEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           Y   T    N LL   +KSG++  AR +FDKMP RD  +WN ++ A++ S  + D   LF
Sbjct: 23  YADRTKLHSNLLLGDLSKSGRVDEARQMFDKMPERDEFTWNTMIVAYSNSRRLSDAEKLF 82

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
              P+++++S+N  I+G+   G   EA  +F  MQ D  +P +YT  S L  C  L+ L 
Sbjct: 83  RSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLL 142

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNLMISGY 232
           RG+QIHG  +      +V V N L  MYA+   I +A +LF+ M   +N V+W  M++GY
Sbjct: 143 RGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGY 202

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQTG- 271
            +NG   K I+ F++++  G   ++ T  ++L AC                    F+T  
Sbjct: 203 SQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNI 262

Query: 272 --------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                          ++ A  L   ++  D V W +MIVG  + G   +AL +F  M   
Sbjct: 263 YVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFGRMHER 322

Query: 318 DVRPDKFSISSVVSSCA------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           D++ D F+I S+++  A      K+AS  H  +V       G     LV++AL+DMY K 
Sbjct: 323 DMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVK-----TGYATYKLVNNALVDMYAKR 377

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G+ D A  VF  M  ++V+SW +++ G   NG   EAL L+  +    + PD     SVL
Sbjct: 378 GIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVL 437

Query: 432 SACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           SA     L E GQ  H + I +  G   SL     ++ +  +   ++ A  +  S+  + 
Sbjct: 438 SASAELTLLEFGQQVHGNYIKS--GFPSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIR- 494

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP--YIMLSNMYAACGRWEDVASI 548
           + + W+ L+   A  G ++  +     +  +  I  GP  Y  + +++   G +  V  +
Sbjct: 495 DLITWTCLIVGYAKNGLLEDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQL 554

Query: 549 RSSMK 553
              M+
Sbjct: 555 LHQME 559



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 9/172 (5%)

Query: 56  PNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK 115
           P++  ++N L+  Y K G L  A  +F+ M +RD+I+W  L+  +A++G ++D +  FD 
Sbjct: 462 PSSLSVNNSLVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKNGLLEDAQRYFDS 521

Query: 116 MPIRDSVS-----YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           M     ++     Y   I  F   G   +  Q+  +M+    EP      + L A  +  
Sbjct: 522 MRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLLHQME---VEPDATVWKAILAASRKHG 578

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           ++  G++   K ++     N      L++MY+  G  D+A  +   M +RN+
Sbjct: 579 NIENGERA-AKTLMELEPNNAVPYVQLSNMYSAAGRQDEAANVRRLMKSRNI 629


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 347/644 (53%), Gaps = 39/644 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + N+L++ +A+ G V+D   +FD MP+RD V++NT + G+ + G    AL  F  M 
Sbjct: 141 DVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMH 200

Query: 149 KD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +      ++AL AC   +   +GK+IHG ++   L  ++ V  +L DMY K GE+
Sbjct: 201 DALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEV 260

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR +F  M  R +V+WN MI GY  N +P +  D F +M+  GL  + VT  N+L AC
Sbjct: 261 AYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAAC 320

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
            QT                                   G+++ + ++F  I  K  V W 
Sbjct: 321 AQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWN 380

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y       +A+ LF E+L++ + PD F++S+VV +   L SL H + +H   + L
Sbjct: 381 NMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGL 440

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  ++ L+ +A++ MY + G    +  +F+ M +++V+SWN+MI GYA +GQ   AL ++
Sbjct: 441 GYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMF 500

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           D++    L+P+  TFVSVL+AC  + L + G  HF+ +   +G+ P ++HY CM +LLGR
Sbjct: 501 DEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGR 560

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
             D+ + +  I+S+P  P S +W +LL+    + DI   E AA  +F+LE  N G YI+L
Sbjct: 561 EGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVL 620

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           S+MYA  GRWEDV  +R  MK K +++    S +E+ +    F + D +H ++  I+E  
Sbjct: 621 SSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVS 680

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
           + L +K++E   + N    +        + +   HS +LA+ + LI    G +PI + KN
Sbjct: 681 NILSRKIEETDDTRNQSYPVPVATRTTTMPN--KHSVRLAVVFGLISSEIG-SPILVKKN 737

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C  CH  +K  S   GR I++ DS  +H F  G+C C D W
Sbjct: 738 VRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 196/427 (45%), Gaps = 40/427 (9%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D+  +N  I GFA+ G    AL  +  M +D   P  +T    +  CA+L  L  G+  H
Sbjct: 71  DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G ++   L  +V+  N+L   YAK G ++ A  +FD M  R++V+WN M+ GY+ NG   
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGS 190

Query: 240 KCIDLFQEMQ-LLGLNPDEVTVSNILGAC------------------------------- 267
             +  FQEM   L +  D V +   L AC                               
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSL 250

Query: 268 ----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                + G +  A  +F  +  +  V W  MI GY  N + ++A   F +M +E ++ + 
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            +  +++++CA+  S  +G+ VHG  V       +++ +AL++MY K G  + +  +F  
Sbjct: 311 VTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGK 370

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA-CLHADLFER 442
           +  + +VSWN+MI  Y       EA+ L+ +LL + L PD FT  +V+ A  L   L   
Sbjct: 371 IANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC 430

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            Q H   I    G   +      ++++  RS DV  + ++   +  K + + W+T++   
Sbjct: 431 RQIHSYIIGL--GYAENTLIMNAVLHMYARSGDVVASREIFDKMVSK-DVISWNTMIMGY 487

Query: 503 AMKGDIK 509
           A+ G  K
Sbjct: 488 AIHGQGK 494



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 199/481 (41%), Gaps = 96/481 (19%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +DI    +LL  + + G V   R++F  MP+R  V++N  I G+A      EA   F +M
Sbjct: 242 QDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQM 301

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +  +    T ++ L ACAQ      G+ +HG +V      +V +  AL +MY K G++
Sbjct: 302 RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKV 361

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA- 266
           + +  +F ++ N+ LVSWN MI+ Y+      + I LF E+    L PD  T+S ++ A 
Sbjct: 362 ESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAF 421

Query: 267 --------CFQ--------------------------TGRIDDAGRLFHVIKEKDNVCWT 292
                   C Q                          +G +  +  +F  +  KD + W 
Sbjct: 422 VLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWN 481

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           TMI+GY  +G+ + AL +F+EM    ++P++ +  SV+++C+                  
Sbjct: 482 TMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS------------------ 523

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-----NVVSWNSMINGYAQNGQDLE 407
                  VS          G+ D+ W  FN+M         +  +  M +   + G   E
Sbjct: 524 -------VS----------GLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLRE 566

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD--SISAVHGITPSLDHYAC 465
            L   + +    + P S  + S+L+A        R QN  D    +A        D+  C
Sbjct: 567 VLQFIESM---PIDPTSRVWGSLLTA-------SRNQNDIDIAEYAAERIFQLEHDNTGC 616

Query: 466 MINL------LGRSSDVDKAVDLIKS---LPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            I L       GR  DV++   L+K       +P SL+     +     GD+ H +    
Sbjct: 617 YIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTI 676

Query: 517 H 517
           H
Sbjct: 677 H 677



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y +S   +  R  F    L  ++   ALL  + + G V+    +F K+  +  VS+N  
Sbjct: 327 LYGRSVHGYVVRRQF----LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNM 382

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           IA +  K    EA+ +F  +      P  +T  + + A   L  LR  +QIH  I+    
Sbjct: 383 IAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGY 442

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             N  + NA+  MYA+ G++  +R +FD+M +++++SWN MI GY  +GQ K  +++F E
Sbjct: 443 AENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDE 502

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           M+  GL P+E T  ++L AC  +G +D+    F+++ ++
Sbjct: 503 MKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQE 541



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 159/340 (46%), Gaps = 22/340 (6%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L P   +  +++ +    GR+D+A      ++  D      MI G+   G    AL  + 
Sbjct: 37  LPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYR 96

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            ML +  RPD+F+   VV  CA+L  L  G+  HG  + LG++ D+   ++L+  Y K G
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVL 431
           + +DA  VF+ MP R++V+WN+M++GY  NG    ALA + ++     ++ DS   ++ L
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAAL 216

Query: 432 SA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +A CL     +  + H   I   HG+   +     ++++  +  +V  A  +  ++P + 
Sbjct: 217 AACCLEVSSMQGKEIHGYVIR--HGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR- 273

Query: 491 NSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
             + W+ ++   A+            +M A  L ++E + A       N+ AAC + E  
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL-QVEVVTA------INLLAACAQTESS 326

Query: 546 ASIRSSMKSKNVKKFAAY-----SWIEIDNKVHKFVSEDR 580
              RS       ++F  +     + +E+  KV K  S ++
Sbjct: 327 LYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEK 366



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 31/109 (28%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N +LH YA+SG +  +R++FDKM  +D+ISWN +                      
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTM---------------------- 483

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
                    I G+A  G  + AL++F  M+ +  +P + T VS L AC+
Sbjct: 484 ---------IMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 328/589 (55%), Gaps = 35/589 (5%)

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A+ V   M++        T+   +  C     +R GK++H  I         F+ N L +
Sbjct: 269 AMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILIN 328

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MY K   +++A+ LFD+M  RN+VSW  MIS Y       + + L   M   G+ P+  T
Sbjct: 329 MYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVMPNMFT 388

Query: 260 VSNILGAC--------------------------------FQTGRIDDAGRLFHVIKEKD 287
            S++L AC                                 + G + +A ++F  +   D
Sbjct: 389 FSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGD 448

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
           +V W ++I  + Q+   ++AL L+  M       D+ +++SV+ +C  L+ L  G+  H 
Sbjct: 449 SVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAH- 507

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
              VL  D DL++++AL+DMYCKCG  +DA  +FN M  ++V+SW++MI G AQNG  +E
Sbjct: 508 -VHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSME 566

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           AL L++ +  +  KP+  T + VL AC HA L   G  +F S++ ++GI P  +HY CM+
Sbjct: 567 ALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYGCML 626

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGR+  +D  V LI  +  +P+ + W TLL  C  + ++     AA+ + +L+P + G
Sbjct: 627 DLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQDTG 686

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y++LSN+YA   RW DVA +R +MK + ++K    SWIE++ ++H F+  D++HP+ + 
Sbjct: 687 AYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGDKSHPQIDE 746

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           I  +L++ I +L  AG+ P+T  VL D + E++  S+ YHSEKLA+ + ++  P   T I
Sbjct: 747 INRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMSFPKEKT-I 805

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI KN+++CGDCH F K  +++  R I++RD  R+HHF  G CSC D W
Sbjct: 806 RIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 200/438 (45%), Gaps = 71/438 (16%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
             +D++  RG  A    Y++L+  C     V   KR+  H+  N Y P T FL N L++ 
Sbjct: 271 HVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKT-FLTNILINM 329

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y K   L  A+ LFDKMP R+++SW  ++SA                             
Sbjct: 330 YVKFNLLEEAQVLFDKMPERNVVSWTTMISA----------------------------- 360

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
             ++N   +  A+++ + M +D   P  +T  S L AC +L DL   KQ+H  I+   L 
Sbjct: 361 --YSNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLE 415

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VFVR+AL D+Y+K GE+ +A  +F  M   + V WN +I+ + ++    + + L++ M
Sbjct: 416 SDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM 475

Query: 249 QLLGLNPDEVTVSNILGACF---------------------------------QTGRIDD 275
           + +G   D+ T++++L AC                                  + G ++D
Sbjct: 476 RRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLED 535

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  +F+ + +KD + W+TMI G  QNG   +AL LF  M  +  +P+  +I  V+ +C+ 
Sbjct: 536 AKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSH 595

Query: 336 LASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
              +  G         + G+D        ++D+  +    DD   + + M    +VV+W 
Sbjct: 596 AGLVNEGWYYFRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWR 655

Query: 394 SMING-YAQNGQDLEALA 410
           ++++   A+   DL   A
Sbjct: 656 TLLDACRARQNVDLATYA 673



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 102/209 (48%), Gaps = 19/209 (9%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  NALL  + + GS++D + +F++M  +D +S++T IAG A  GFS EAL +F  M
Sbjct: 515 QDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGFSMEALNLFESM 574

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR---NALTDMYAKG 204
           +    +P   T +  L AC+    +  G      +   NL G    R     + D+  + 
Sbjct: 575 KVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSM--NNLYGIDPGREHYGCMLDLLGRA 632

Query: 205 GEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDL--FQEMQLLGLNPDE---- 257
            ++D    L   MN   ++V+W  +    L   + ++ +DL  +   ++L L+P +    
Sbjct: 633 EKLDDMVKLIHEMNCEPDVVTWRTL----LDACRARQNVDLATYAAKEILKLDPQDTGAY 688

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           V +SNI      + R +D   +   +K++
Sbjct: 689 VLLSNIYAI---SKRWNDVAEVRRTMKKR 714


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 344/605 (56%), Gaps = 9/605 (1%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
            +S+ +   SV    ++F +  +++S  +N  I G A       ++  F  M K +  P 
Sbjct: 80  FISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPD 139

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
             T    L + A L +   G+ +H  I+   L  + FVR +L DMY K  E+  A  +FD
Sbjct: 140 RLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFD 199

Query: 216 R----MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
                + N +++ WN++I GY + G   K  +LF  M       D  + ++++    + G
Sbjct: 200 ESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP----KKDTGSWNSLINGFMKMG 255

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            +  A  LF  + EK+ V WTTM+ G++QNG  E AL  F  ML E  RP+ ++I S +S
Sbjct: 256 DMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALS 315

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CAK+ +L  G  +H      G   +L++ +AL+DMY KCG  + A  VF+    + ++ 
Sbjct: 316 ACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLI 375

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W+ MI G+A +G   +AL  ++ +     KPDS  F++VL+AC H+     G   FD++ 
Sbjct: 376 WSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMR 435

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             + I PS+ HY  ++++LGR+  +D+A+  I+++P  P+ ++W  L   C    +++  
Sbjct: 436 RGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMA 495

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           E+A++ L +LEP + G Y+ LSN YA+ GRW+D   +R SM+     K   +S+IE+D+K
Sbjct: 496 ELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHK 555

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
           +H+FV+ D TH     IY +L ++    +E G++   + VLH+ +EEEK +++ YHSEKL
Sbjct: 556 LHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEEALGYHSEKL 615

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           ALA+ ++    G T +RI+KN+RVC DCH FMK+AS +  R IILRD  RFHHF  G CS
Sbjct: 616 ALAFGIVSTRPGTT-VRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFHHFNDGVCS 674

Query: 692 CKDNW 696
           C D W
Sbjct: 675 CGDYW 679



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 28/347 (8%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +QIHG++   N+  +  V        +    +D A  +F R   +N   +N +I G  +N
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNIL--GACFQTGRIDDAGRLFH--VIK---EKDN 288
            + +  I  F  M    ++PD +T   +L   A    G +   GR  H  ++K   E D+
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGV---GRALHCGILKFGLEFDS 175

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG- 347
               +++  Y +  +   AL +F+E   E V+     I +V         L HG    G 
Sbjct: 176 FVRVSLVDMYVKVEELGSALKVFDES-PESVKNGSVLIWNV---------LIHGYCRMGD 225

Query: 348 --KAVVL---GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
             KA  L       D    ++LI+ + K G    A  +F  MP +NVVSW +M+NG++QN
Sbjct: 226 LVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQN 285

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   +AL  +  +L+E  +P+ +T VS LSAC      + G    + +S  +G   +L  
Sbjct: 286 GDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSG-NGFKLNLVI 344

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
              ++++  +  +++ A  +      K   LIWS ++   A+ G  +
Sbjct: 345 GTALVDMYAKCGNIEHAEKVFHETKEK-GLLIWSVMIWGWAIHGHFR 390



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 95/239 (39%), Gaps = 32/239 (13%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +HG+     V     V +  I         D A ++F     +N   +N++I G A+N +
Sbjct: 61  IHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENSR 120

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSA-----------CLHADLFERGQNHFDSISAV 453
              +++ +  +L+  + PD  TF  VL +            LH  + + G   FDS   V
Sbjct: 121 FESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLE-FDSFVRV 179

Query: 454 HGITPSLDHYACMINLLGRSSDV-DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
                SL      +  LG +  V D++ + +K+     + LIW+ L+      GD+    
Sbjct: 180 -----SLVDMYVKVEELGSALKVFDESPESVKN----GSVLIWNVLIHGYCRMGDL---- 226

Query: 513 MAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           + A  LF+  P  + G +  L N +   G       +   M  KNV      SW  + N
Sbjct: 227 VKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNV-----VSWTTMVN 280


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/615 (36%), Positives = 346/615 (56%), Gaps = 47/615 (7%)

Query: 91  ISWNALLSAHARS--GSVQDLRALFDKMPIRDSVSYNTAIAGFAN-KGFSREALQVFSRM 147
           I+ N LL     S  GS+     LFD++P  D   YNT I   A     S  ++++F  M
Sbjct: 48  ITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSM 107

Query: 148 QK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
            +   F P  YT V    AC   L +  G+QI    +   L  N+FV NA+  MYA  G 
Sbjct: 108 VRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGL 167

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D+AR +FD   +++L SWN+MI GY+ +G+                             
Sbjct: 168 VDEARRVFDWSLDQDLYSWNIMIGGYVGSGE----------------------------- 198

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                 I  A  +F  + E+D V WTT+I GY Q G  ++AL LF+EML     P++F++
Sbjct: 199 ------IGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTL 252

Query: 327 SSVVSSCAKLASLYHGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-- 382
           +S +++CA L +L  G+ +H       + +++ LL S  L+DMY KCG  D A  VF+  
Sbjct: 253 ASALAACANLVALDQGRWIHVYIDKSEIKMNERLLAS--LLDMYAKCGEIDFAAKVFHDE 310

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
                 V  WN+MI GYA +G+  EA+ L++++  E + P+  TFV++L+AC H  L E 
Sbjct: 311 YGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEE 370

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+ +F S+++ +GI P ++HY CM++LLGRS  + +A + + ++P  P++ IW  LL  C
Sbjct: 371 GRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGAC 430

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  DI+ G+   + + EL+  + G +++L+N+Y+A G+W++  ++R  ++    KK   
Sbjct: 431 RIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPG 490

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT-QEEEKV 621
            S IE++   H+F+  DR+HP+T+ +Y  L ++  KL+ AG+ P    VL D   EE+K 
Sbjct: 491 CSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKE 550

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
            ++  HSEKLA+A+ LI  P G T IRI+KN+RVC DCH   KF S +  R II+RD  R
Sbjct: 551 TALSKHSEKLAIAFGLINTPPG-TAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIR 609

Query: 682 FHHFVGGNCSCKDNW 696
           +HHF  G CSCKD W
Sbjct: 610 YHHFKDGFCSCKDYW 624



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 3/221 (1%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N ++  YA  G +  AR +FD    +D+ SWN ++  +  SG +   + +FD+M  R
Sbjct: 153 FVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSER 212

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D VS+ T IAG+   G  +EAL +F  M +    P ++T  SAL ACA L+ L +G+ IH
Sbjct: 213 DVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIH 272

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQ 237
             I    +  N  +  +L DMYAK GEID A  +F       L    WN MI GY  +G+
Sbjct: 273 VYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGK 332

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
            K+ IDLF++M++  ++P++VT   +L AC   G++ + GR
Sbjct: 333 SKEAIDLFEQMKVEKVSPNKVTFVALLNAC-SHGKLVEEGR 372



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/228 (23%), Positives = 99/228 (43%), Gaps = 35/228 (15%)

Query: 252 GLNPDEVTVSNILGACFQT--GRIDDAGRLFHVIKEKDNVCWTTMIVGYT--QNGKEEDA 307
           GL    +T + +L     +  G +  A +LF  I + D   + TMI  +           
Sbjct: 42  GLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSM 101

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
            I  + +      P++++   V  +C     +  G+ +   A+ +G++ +L V++A+I M
Sbjct: 102 RIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRM 161

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ--------------DL------- 406
           Y   G+ D+A  VF+    +++ SWN MI GY  +G+              D+       
Sbjct: 162 YANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTII 221

Query: 407 ----------EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
                     EAL L+ ++LQ    P+ FT  S L+AC +    ++G+
Sbjct: 222 AGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGR 269


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/615 (36%), Positives = 336/615 (54%), Gaps = 38/615 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L  Y + G +  A+ ++ +MP R II+ N+++      G V +   LFD+M  +D V
Sbjct: 148 NSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMV 207

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           +++  IA F       EA++ F  M K      +   VSAL+ACA LL +  GK IH   
Sbjct: 208 TWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLS 267

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +       + ++NAL  MY+K G+I  AR LFD     +L+SWN MISGYLK        
Sbjct: 268 LKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK-------- 319

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                         +D+A  +F  + EKD V W++MI GY QN 
Sbjct: 320 ---------------------------CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 352

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             ++ L LF EM     +PD+ ++ SV+S+CA+LA+L  G+ VH      G+  ++++ +
Sbjct: 353 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGT 412

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
            LIDMY KCG  + A  VF  M  + + +WN++I G A NG    +L ++  + + ++ P
Sbjct: 413 TLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTP 472

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           +  TF+ VL AC H  L + GQ+HF S+   H I P++ HY CM++LLGR+  + +A +L
Sbjct: 473 NEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEEL 532

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           +  +P  P+   W  LL  C   GD + G    R L EL+P + G +++LSN+YA+ G+W
Sbjct: 533 LNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKW 592

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           +DV  IR  M    V K    S IE +  +H+F++ D+THP+ + I + L ++  KL+  
Sbjct: 593 DDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLE 652

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHL 661
           G++P+   VL D  EEEK  ++  HSEKLA+A+ LI   P   TPIRIMKN+R+C DCH 
Sbjct: 653 GYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPP--TPIRIMKNLRICNDCHT 710

Query: 662 FMKFASDIIGRTIIL 676
             K  S    R I+ 
Sbjct: 711 AAKLISKAFCRKIVF 725



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/363 (31%), Positives = 184/363 (50%), Gaps = 10/363 (2%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  +  V + K + S + L     +   L N L++ Y+K G +  AR LFD+  L D+IS
Sbjct: 251 CANLLVVNMGKLIHS-LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLIS 309

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+++S + +   V + +A+FD MP +D VS+++ I+G+A      E L +F  MQ   F
Sbjct: 310 WNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGF 369

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P + T VS ++ACA+L  L +GK +H  I    L  NV +   L DMY K G ++ A  
Sbjct: 370 KPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALE 429

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F  M  + + +WN +I G   NG  +  +D+F  M+   + P+E+T   +LGAC   G 
Sbjct: 430 VFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGL 489

Query: 273 IDDAGRLFHVI----KEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +D+    F+ +    K + NV  +  M+    + GK ++A  L N M    + PD  +  
Sbjct: 490 VDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRM---PMTPDVATWG 546

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           +++ +C K      G+ V  K + L  D D      L ++Y   G  DD   +  MM   
Sbjct: 547 ALLGACKKHGDSEMGRRVGRKLIELQPDHDGF-HVLLSNIYASKGKWDDVLEIRGMMTKH 605

Query: 388 NVV 390
            V+
Sbjct: 606 RVL 608



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 199/433 (45%), Gaps = 41/433 (9%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R +F+ +   +   +N  I  +        A  ++  M  +     +YT+   + AC+  
Sbjct: 32  RRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIR 91

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
                 KQ+H  ++      +V+VRN L + ++    +  A  +F+  +  + VSWN ++
Sbjct: 92  RSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSIL 151

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDE-VTVSNILGACF-QTGRIDDAGRLFHVIKEKD 287
           +GY++ G  ++   ++ +M      P+  +  SN +   F   G + +A +LF  + EKD
Sbjct: 152 AGYIEIGNVEEAKHIYHQM------PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKD 205

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            V W+ +I  + QN   E+A+  F  M    V  D+    S +S+CA L  +  G+++H 
Sbjct: 206 MVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS 265

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS------------- 394
            ++ +G +  + + +ALI MY KCG    A  +F+     +++SWNS             
Sbjct: 266 LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDN 325

Query: 395 ------------------MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
                             MI+GYAQN    E LAL+ ++     KPD  T VSV+SAC  
Sbjct: 326 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 385

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
               E+G+     I   +G+T ++     +I++  +   V+ A+++   +  K  S  W+
Sbjct: 386 LAALEQGKWVHAYIKR-NGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIS-TWN 443

Query: 497 TLLSVCAMKGDIK 509
            L+   AM G ++
Sbjct: 444 ALILGLAMNGLVE 456



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 156/383 (40%), Gaps = 67/383 (17%)

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           F    ID   R+F+ I+  +   W  MI  Y Q      A  L+  MLS  +  D ++  
Sbjct: 23  FPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYP 82

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
            ++ +C+   S +  + VH   + LG D D+ V + LI+ +  C    DA  VFN     
Sbjct: 83  LLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVL 142

Query: 388 NVVSWNSMINGYAQNGQDLEALALYD---------------------------KLLQENL 420
           + VSWNS++ GY + G   EA  +Y                            KL  E L
Sbjct: 143 DSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEML 202

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHF----------DSISAVHGITPSLDHYACMINLL 470
           + D  T+ ++++     +++E     F          D + AV  ++   +     +  L
Sbjct: 203 EKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKL 262

Query: 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPY 529
             S  +    +   S  +  N+LI+  + S C   GDI    M AR LF E   ++   +
Sbjct: 263 IHSLSLKIGTE---SYINLQNALIY--MYSKC---GDI----MVARKLFDEAYLLDLISW 310

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
             + + Y  C   ++  +I  SM  K+V      SW    + +  +   D        ++
Sbjct: 311 NSMISGYLKCNLVDNAKAIFDSMPEKDV-----VSW---SSMISGYAQND--------LF 354

Query: 590 EELSKLIKKLQEAGFSPN-TKLV 611
           +E   L +++Q +GF P+ T LV
Sbjct: 355 DETLALFQEMQMSGFKPDETTLV 377


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 329/577 (57%), Gaps = 54/577 (9%)

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           +  S  +N  I  +  +   R AL V+++++K  FE  ++   S L AC Q+   + GK+
Sbjct: 121 LSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKE 180

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IHG ++   L  +VFV NAL  MY +   ++ AR +FD+M  R++VSW    +  L    
Sbjct: 181 IHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALL---- 236

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                D++ +   LGL                      A +LF+ + +K  V WT MI G
Sbjct: 237 -----DMYAKCGHLGL----------------------ARQLFNGLTQKTVVSWTAMIAG 269

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             ++ + E+   LF  M  E++ P++ ++ +                         V+ D
Sbjct: 270 CIRSNRLEEGTKLFIRMQEENIFPNEITMLNKER----------------------VEVD 307

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
            ++++AL+DMY KCG  + A  +F    +R++  WN++I G+A +G   EAL ++ ++ +
Sbjct: 308 CILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMER 367

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
           + +KP+  TF+ +L AC HA L   G+  F+ +    G+ P ++HY CM++LLGR+  +D
Sbjct: 368 QGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLD 427

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A ++IKS+P KPN+++W  L++ C +  + + GE+AA  L E+EP N G  +++SN+YA
Sbjct: 428 EAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYA 487

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  RW D A +R +MK+  +KK   +S IE++  VH+F+  D++HP+   I E L+++ +
Sbjct: 488 AANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRR 547

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           KL EAG+ P+T  VL +  EEEK  ++ YHSEKLA+A+ LI      TPIRI+KN+RVC 
Sbjct: 548 KLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPS-TPIRIVKNLRVCN 606

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           DCH   K  S I GR II+RD NRFHHF  G CSC D
Sbjct: 607 DCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGD 643



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 114/225 (50%), Gaps = 26/225 (11%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW----NALLSAHARSGSVQDLRALFDK 115
           F+ N L+  Y +   + YAR +FDKM  RD++SW     ALL  +A+ G +   R LF+ 
Sbjct: 195 FVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNG 254

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           +  +  VS+   IAG        E  ++F RMQ++   P + T          +L+  R 
Sbjct: 255 LTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT----------MLNKER- 303

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
                      +  +  +  AL DMYAK G+I+ A  LF    +R++  WN +I+G+  +
Sbjct: 304 -----------VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMH 352

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           G  ++ +D+F EM+  G+ P+++T   +L AC   G + +  +LF
Sbjct: 353 GYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLF 397



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/271 (23%), Positives = 110/271 (40%), Gaps = 60/271 (22%)

Query: 50  DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDL 109
           D+  + P TT     LL  YAK G L  AR LF+ +  + ++SW A+++   RS  +++ 
Sbjct: 224 DVVSWIPTTT----ALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEG 279

Query: 110 RALFDKMP------------------------------------------------IRDS 121
             LF +M                                                  RD 
Sbjct: 280 TKLFIRMQEENIFPNEITMLNKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 339

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
             +N  I GFA  G+  EAL +F+ M++   +P D T +  L+AC+    +  GK++  K
Sbjct: 340 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 399

Query: 182 IV-VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPK 239
           +V    L   +     + D+  + G +D+A  +   M  + N + W  +++    +  P+
Sbjct: 400 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 459

Query: 240 KCIDLFQEMQLLGLNPD----EVTVSNILGA 266
             +      QLL + P+     V +SNI  A
Sbjct: 460 --LGELAATQLLEIEPENCGYNVLMSNIYAA 488


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/674 (33%), Positives = 360/674 (53%), Gaps = 45/674 (6%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           TT   N LL F+ ++G++  AR LF+KM    +  +  ++  +A  G ++D   LF +MP
Sbjct: 49  TTPPSNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMP 108

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
           ++D +S+N+ + G    G    A  +F +M +          VS       LL+  R + 
Sbjct: 109 VKDLISWNSMLKGCLKCGDLTMACNMFDKMSERNV-------VSWTTIINGLLEFGRVEV 161

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
                 V     +V   N++   +   G ++ A  LF++M NRN++SW  +I G   NG+
Sbjct: 162 AECLFRVMPTK-DVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGR 220

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------FQTGR--------- 272
             + + +F +M L        T++  L AC                 +TG          
Sbjct: 221 SFEALVVFHKM-LASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISAS 279

Query: 273 ----------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                     ID+A  +F+    ++ V WT ++ GY  N +  DAL +F  M+   V P+
Sbjct: 280 LISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPN 339

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           + S++S ++SC  L ++  G+ VH  A  LG++ D+ VS++L+ MY KCG  +D   VF 
Sbjct: 340 QSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFT 399

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M  +NVVSWNS+I G AQ+G    AL L+ ++++  + PD  T   +LSAC H+ +  +
Sbjct: 400 RMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTK 459

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G+  F       GI  + +HY+ M++LLGR   +++A  LI  +P K N ++W  LLS  
Sbjct: 460 GRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSS 519

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
               ++   E AA+ + +L+P  +  Y +LSN+YA+ G+W +V+ IR  MK + + K   
Sbjct: 520 INHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPG 579

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            SWI I    H F+S D++HP +  IY++L  L  KL+E G+ P+ K   HD + E+K +
Sbjct: 580 SSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEE 639

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
            + YHSE+LA+ + LI    G T I +MKN+R+CGDCH  +K  S ++GR I++RD +RF
Sbjct: 640 MLSYHSERLAIGFGLISTVEGSTII-VMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRF 698

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G CSC D W
Sbjct: 699 HHFHNGTCSCGDYW 712



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 196/412 (47%), Gaps = 47/412 (11%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++  ++  C +  D+ +A  +   M        TT + N LL F    G++  A  LF  
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTII-NGLLEF----GRVEVAECLFRV 168

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP +D+ +WN+++     +G V+D   LF+KMP R+ +S+ + I G  + G S EAL VF
Sbjct: 169 MPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVF 228

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            +M    F+ T  T   AL ACA +     G QIHG IV      N ++  +L   YA  
Sbjct: 229 HKMLAS-FKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANC 287

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
             ID A  +F+   +RN+V W  +++GY  N +    + +F+ M  + + P++ ++++ L
Sbjct: 288 KLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSAL 347

Query: 265 GAC-----------------------------------FQTGRIDDAGRLFHVIKEKDNV 289
            +C                                    + G I+D   +F  +  K+ V
Sbjct: 348 NSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVV 407

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV---H 346
            W ++IVG  Q+G    AL LF +M+   V PD+ +++ ++S+C     L  G+      
Sbjct: 408 SWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHF 467

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMIN 397
           GK    G++      S+++D+  + G  ++A  + ++MP + N + W ++++
Sbjct: 468 GKN--FGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLS 517


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/504 (37%), Positives = 300/504 (59%), Gaps = 36/504 (7%)

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------- 267
           M+ GY+     KK ++LF  +   G   D++T++    AC                    
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 268 ---------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                           + G + +AG +F+ I   D+V WT+MI G   NG E+ AL +++
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            M    V PD+++ ++++ + + + +L  G+ +H   + L    D  V ++L+DMY KCG
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCG 180

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             +DA+ +F  M  RN+  WN+M+ G AQ+G   EA+ L+  +    ++PD  +F+ +LS
Sbjct: 181 NIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILS 240

Query: 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492
           AC HA L      +  S+   +GI P ++HY+C+++ LGR+  V +A  +I+++P K ++
Sbjct: 241 ACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASA 300

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552
            I   LL  C ++GD++ G+  A  LF LEP ++  Y++LSN+YAA  RW+DV   R  M
Sbjct: 301 SINRALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMM 360

Query: 553 KSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612
           K KNVKK   +SWI++ N +H FV +DR+HP+ +IIY+++ +++K ++E G+ P+T+ VL
Sbjct: 361 KRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVL 420

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGR 672
            D ++EEK +S+ YHSEKLA+AY LI  P   T IR++KN+RVCGDCH  +K+ S +  R
Sbjct: 421 LDVEDEEKERSLYYHSEKLAIAYGLISTPASTT-IRVIKNLRVCGDCHNAIKYISKVFER 479

Query: 673 TIILRDSNRFHHFVGGNCSCKDNW 696
            I+LRD+NRFHHF  G CSC D W
Sbjct: 480 EIVLRDANRFHHFRDGVCSCGDYW 503



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 105/188 (55%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           + +L  + + G + +   +F+ +   D V++ + I+G  + G   +AL+++ RM++ R  
Sbjct: 69  SGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVM 128

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P +YT  + + A + +  L +G+Q+H  ++  +   + FV  +L DMYAK G I+ A  L
Sbjct: 129 PDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRL 188

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F +MN RN+  WN M+ G  ++G  ++ ++LF+ M+  G+ PD V+   IL AC   G  
Sbjct: 189 FKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLT 248

Query: 274 DDAGRLFH 281
            +A    H
Sbjct: 249 SEAYEYLH 256



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 142/307 (46%), Gaps = 38/307 (12%)

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           ++AL++FS + K   +    T  +A  AC  L+ L +GKQIH   +      ++ V + +
Sbjct: 12  KKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGI 71

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY K G++  A  +F+ ++  + V+W  MISG + NG   + + ++  M+   + PDE
Sbjct: 72  LDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDE 131

Query: 258 VTVSNILGA--CF---------------------------------QTGRIDDAGRLFHV 282
            T + ++ A  C                                  + G I+DA RLF  
Sbjct: 132 YTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKK 191

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC--AKLASLY 340
           +  ++   W  M+VG  Q+G  E+A+ LF  M S  + PD+ S   ++S+C  A L S  
Sbjct: 192 MNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEA 251

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           + + +H      G++ ++   S L+D   + G+  +A  V   MP +   S N  + G  
Sbjct: 252 Y-EYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGAC 310

Query: 401 QNGQDLE 407
           +   D+E
Sbjct: 311 RIQGDVE 317



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 1   MKAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF 60
           ++  H++RQ      SR     E  +  L+   + V  +E  ++L +++ +     +  F
Sbjct: 116 LRIYHRMRQ------SR-VMPDEYTFATLIKASSCVTALEQGRQLHANV-IKLDCVSDPF 167

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR- 119
           +   L+  YAK G +  A  LF KM +R+I  WNA+L   A+ G+ ++   LF  M    
Sbjct: 168 VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHG 227

Query: 120 ---DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
              D VS+   ++  ++ G + EA +    M  D     +  H S L
Sbjct: 228 IEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 274


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 334/596 (56%), Gaps = 37/596 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+H Y + G     R  FD++P++D +SW  ++S  A+ G + D R L  + P+R
Sbjct: 144 FVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVR 203

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +S+ + IA ++    ++EA+  F  M  +   P D T +  L+AC+QL DL  G  +H
Sbjct: 204 DVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLH 263

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
             +    +  +  +  AL DMYAK G+   AR +FD +   R   SWN +I GY K+G  
Sbjct: 264 SLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGH- 322

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                             +D A  LF  ++ +D + + +MI GY
Sbjct: 323 ----------------------------------VDVARSLFDQMEVRDIITFNSMITGY 348

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL+LF  M   D+R D F++ S++S+CA L +L  G+ +H    +  V+ D+
Sbjct: 349 IHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDI 408

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +AL+DMY KCG  ++A  VF  M  R+V +W +MI G A NG     L  + ++  +
Sbjct: 409 YIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCD 468

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +P+  ++++VL+AC H+ L   G+ +FD +  ++ I P ++HY CMI+LLGRS  +D+
Sbjct: 469 GFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 528

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+DL+K++P +PNS+IW+++LS C +   I   + AA HL ++EP     Y+ L N+   
Sbjct: 529 AMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICID 588

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +WED + IR  M+ + VKK A YS + +  +VHKFV  D++HP    I   L ++  +
Sbjct: 589 SRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHR 648

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L+ AG+SP T  V  D  EEEK +++  HSEKLA+A+ L+     + P+ I+KN+R
Sbjct: 649 LKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNL-PVHIIKNLR 703



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 240/502 (47%), Gaps = 43/502 (8%)

Query: 111  ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
            +LF ++P++++   N  + G  N   + E +  F  M++   E    ++  A+  C Q  
Sbjct: 849  SLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNG 908

Query: 171  D-LRRGKQIHGKIV-VGNLGGNVFVRNALTDMY-AKGGEIDKARWLFDRMNNRNLVSWNL 227
            + L +G+Q+HG ++  G +  N+F+ N+L D+Y A G  +D  + L D ++  +++SWN 
Sbjct: 909  EWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDILSE-DVISWNS 967

Query: 228  MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD 287
            ++S Y   G  K+ +   ++M   G  P   +  ++L    +TG      ++  ++ +  
Sbjct: 968  ILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLG 1027

Query: 288  NVC-----WTTMIVGYTQNGKEEDALILFNE----------------------------- 313
              C      TT+I  Y +    + +L +FNE                             
Sbjct: 1028 FSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEIL 1087

Query: 314  --MLSEDVRPDKFSISSVVSSCAKLAS--LYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
              M+ E V PD  + S+ + + +  AS  L   Q++H   V LG + D+ V S+LI  Y 
Sbjct: 1088 HCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYA 1147

Query: 370  KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
              G    +  +F  +   NV+ + ++I+  A+ G    A+ L+D+++   LKPD+ TF+ 
Sbjct: 1148 CAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLC 1207

Query: 430  VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
             ++ C  A +FE G+   + + A   + P   H+ACM+NLL R   V +A+++++  P +
Sbjct: 1208 AIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLR 1267

Query: 490  PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549
              +  WS+LL  C   G+   G+ AA  L ++   +    + +SN +   G  E    I+
Sbjct: 1268 HYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIK 1327

Query: 550  SSMKSKNVKKFAAYSWIEIDNK 571
                 K VKK + +S IE+ ++
Sbjct: 1328 EMTNVKEVKK-SGHSLIEVSHR 1348



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 182/342 (53%), Gaps = 23/342 (6%)

Query: 6   KLRQAID---TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           + ++A+D    + S G A  +     ++  C+++ D+EL   L S +     E   +   
Sbjct: 220 RAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVK----EKGMSMSE 275

Query: 63  N---RLLHFYAKSGKLFYARDLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           N    L+  YAK G   +AR++FD +   R   SWNA++  + + G V   R+LFD+M +
Sbjct: 276 NLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEV 335

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD +++N+ I G+ + G  REAL +F  M++      ++T VS L+ACA L  L +G+ +
Sbjct: 336 RDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRAL 395

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  I +  +  ++++  AL DMY K G +++A  +F RM  R++ +W  MI+G   NG  
Sbjct: 396 HACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMG 455

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI--DDAGRLFHVIKEKDNVCW 291
           K  ++ F +M+  G  P+ V+   +L AC        GR+  D+   L+++  + ++  +
Sbjct: 456 KAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH--Y 513

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             MI    ++G  ++A+ L   M    ++P+    +S++S+C
Sbjct: 514 GCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILSAC 552



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 162/372 (43%), Gaps = 76/372 (20%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSRE----ALQVFSRMQKDRFEPTDYTHVSALNACA 167
           LFD+MP   +  ++TA+      G S         +F RM++    P  +T    L  C+
Sbjct: 59  LFDRMPA-STFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFT-FHFLFKCS 116

Query: 168 QLLDLRR--GKQIHGKIVVGNL-GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
                R      +H   +   L     FV N+L  MY + G     R  FD +  ++ VS
Sbjct: 117 SSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVS 176

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           W ++ISG  K G                                    + DA  L     
Sbjct: 177 WTMVISGLAKMGM-----------------------------------LSDARLLLAQAP 201

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +D + WT++I  Y++  + ++A+  F  MLSE + PD  ++  V+S+C++L  L  G  
Sbjct: 202 VRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCS 261

Query: 345 VHG--KAVVLGVDDDLLVS------------------------------SALIDMYCKCG 372
           +H   K   + + ++L+V+                              +A+ID YCK G
Sbjct: 262 LHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHG 321

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432
             D A ++F+ M  R+++++NSMI GY  +GQ  EAL L+  + + +L+ D+FT VS+LS
Sbjct: 322 HVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLS 381

Query: 433 ACLHADLFERGQ 444
           AC       +G+
Sbjct: 382 ACASLGALPQGR 393



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/445 (22%), Positives = 171/445 (38%), Gaps = 72/445 (16%)

Query: 116  MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
            M +RD  S N  I GF   G +  A  V+  M       T +T  + L  C+    L   
Sbjct: 757  MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 813

Query: 176  KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             Q+HG+++   L  N FV +AL + Y        +  LF  +  +N    N+++ G    
Sbjct: 814  -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872

Query: 236  GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH--VIK--------- 284
               ++ I  F +M+   L  + ++    +  C+Q G   + GR  H  V+K         
Sbjct: 873  KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932

Query: 285  --------------------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                                       +D + W +++  Y   G  ++A+    +ML   
Sbjct: 933  LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 992

Query: 319  VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDA 377
              P   S  S+++   K      G  +HG    LG     + V + LIDMY KC   D +
Sbjct: 993  KMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS 1052

Query: 378  WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              +FN +P+  +   NS+I    +      AL +   ++ E + PD  TF + + A    
Sbjct: 1053 LAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAI--- 1109

Query: 438  DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK--------SLPH- 488
                       S+SA   +T     ++C++  LG   D+     LI         S  H 
Sbjct: 1110 -----------SLSASPSLTSCQMLHSCLVK-LGFEMDMAVCSSLITAYACAGQLSSSHL 1157

Query: 489  ------KPNSLIWSTLLSVCAMKGD 507
                   PN + ++ ++S CA  GD
Sbjct: 1158 IFEGLLDPNVICFTAIISACARYGD 1182



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/230 (20%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           +D      MI G+ ++G  + A  ++  M++  +R    + S+++  C    S Y    +
Sbjct: 760 RDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVC----STYEALQL 815

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG+ + LG+  +  V SAL++ Y        + ++F  +P +N    N ++ G       
Sbjct: 816 HGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLT 875

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYA 464
            E +  +  + ++ L+ +  ++   +  C    +  E+G+     +     I  ++    
Sbjct: 876 EELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSN 935

Query: 465 CMINL---LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
            +++L   +G S D  KA++ I S     + + W+++LS+ A +G +K  
Sbjct: 936 SLVDLYSAIGDSVDTVKALNDILS----EDVISWNSILSMYADRGHMKEA 981


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 334/616 (54%), Gaps = 46/616 (7%)

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +S N  I     +G  ++A++V S+       P+  T+   +  C     L    ++H  
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQES----SPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           I+      + F+   L  MY+  G +D AR +FD+   R +  WN +       G  ++ 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------- 270
           + L+ +M  +G+  D  T + +L AC  +                               
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 271 --------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE--DVR 320
                   G +D A  +F  +  ++ V W+ MI  Y +NGK  +AL  F EM+ E  D  
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           P+  ++ SV+ +CA LA+L  G+++HG  +  G+D  L V SAL+ MY +CG  +    V
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRV 342

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F+ M  R+VVSWNS+I+ Y  +G   +A+ +++++L     P   TFVSVL AC H  L 
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLV 402

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           E G+  F+++   HGI P ++HYACM++LLGR++ +D+A  +++ +  +P   +W +LL 
Sbjct: 403 EEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLG 462

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            C + G+++  E A+R LF LEP NAG Y++L+++YA    W++V  ++  ++ + ++K 
Sbjct: 463 SCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKL 522

Query: 561 AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
               W+E+  K++ FVS D  +P  E I+  L KL + ++E G+ P TK VL++ + EEK
Sbjct: 523 PGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEK 582

Query: 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
            + +  HSEKLALA+ LI    G  PIRI KN+R+C DCHLF KF S  + + I++RD N
Sbjct: 583 ERIVLGHSEKLALAFGLINTSKG-EPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVN 641

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F  G CSC D W
Sbjct: 642 RFHRFKNGVCSCGDYW 657



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/440 (24%), Positives = 187/440 (42%), Gaps = 86/440 (19%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           KL+QAI  L S+  + +++ Y  L+L C   + +  A R+  H+ L+       FL  +L
Sbjct: 61  KLKQAIRVL-SQESSPSQQTYELLILCCGHRSSLSDALRVHRHI-LDNGSDQDPFLATKL 118

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y+  G + YAR +FDK   R I  WNAL  A                          
Sbjct: 119 IGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRA-------------------------- 152

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA----QLLDLRRGKQIHGK 181
                    G   E L ++ +M +   E   +T+   L AC      +  L +GK+IH  
Sbjct: 153 -----LTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAH 207

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           +       +V++   L DMYA+ G +D A ++F  M  RN+VSW+ MI+ Y KNG+  + 
Sbjct: 208 LTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEA 267

Query: 242 IDLFQEM--QLLGLNPDEVTVSNILGACF------------------------------- 268
           +  F+EM  +    +P+ VT+ ++L AC                                
Sbjct: 268 LRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALV 327

Query: 269 ----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G+++   R+F  + ++D V W ++I  Y  +G  + A+ +F EML+    P   
Sbjct: 328 TMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPV 387

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVL------GVDDDLLVSSALIDMYCKCGVTDDAW 378
           +  SV+ +C+     + G V  GK +        G+   +   + ++D+  +    D+A 
Sbjct: 388 TFVSVLGACS-----HEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAA 442

Query: 379 TVFNMMPTR-NVVSWNSMIN 397
            +   M T      W S++ 
Sbjct: 443 KMVQDMRTEPGPKVWGSLLG 462


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/608 (36%), Positives = 334/608 (54%), Gaps = 58/608 (9%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFA---NKGFSREALQVFSRMQKD-RFEPTDYTHVSALNA 165
           RA+F +MP  +   +NT +   A   ++    EAL +FS M  D R +P  +T  S L A
Sbjct: 72  RAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKA 131

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF----------- 214
           CA+   LR GKQIHG IV      + FV + L  MY     ++ A  LF           
Sbjct: 132 CARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSC 191

Query: 215 -----DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
                 R  + N+V WN+MI G ++ G  K   +LF EM      P    VS        
Sbjct: 192 QMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEM------PPRSVVS-------- 237

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
                                W  MI GY QNG   +A+ LF EM S ++ P+  ++ SV
Sbjct: 238 ---------------------WNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSV 276

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + + A++ +L  G+ +H  A    V+ D ++ SAL+DMY KCG  D A  VF  +P RN 
Sbjct: 277 LPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNA 336

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           ++W+++I  +A +G+  +A+  +  + +  + P+   ++ +LSAC HA L E G++ F  
Sbjct: 337 ITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSH 396

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           +  V G+ P ++HY CM++LLGR+  +++A +LI+++P +P+ +IW  LL  C M  ++K
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLK 456

Query: 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEID 569
            GE  A  L EL P ++G Y+ LSN+YA+ G WE VA +R  MK  +++K    SWIEI 
Sbjct: 457 MGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIH 516

Query: 570 NKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
             +H+F+ ED +H + + I   L ++  KL+  G+ PNT  V  +T E+E+ +++ YHSE
Sbjct: 517 GIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARALQYHSE 576

Query: 630 KLALAYCLIKK-PHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGG 688
           K+A+A+ LI   P    P++I+KN+R+C DCH  +K  S I  R II+RD  RFH F  G
Sbjct: 577 KIAVAFGLISTAPQ--HPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQFEHG 634

Query: 689 NCSCKDNW 696
           +CSC D W
Sbjct: 635 SCSCMDYW 642



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 61/339 (17%)

Query: 20  AATEEAYTQL---VLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           A  E+AY+     V+D      +EL KR Q              L N ++    + G + 
Sbjct: 171 AVMEDAYSLFCKNVVDFDGSCQMELDKRKQD---------GNVVLWNIMIDGQVRLGDIK 221

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A++LFD+MP R ++SWN ++S                               G+A  G 
Sbjct: 222 SAKNLFDEMPPRSVVSWNVMIS-------------------------------GYAQNGH 250

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH-----GKIVVGNLGGNV 191
             EA+ +F  MQ    +P   T VS L A A++  L  GK IH      K+ + ++ G  
Sbjct: 251 FIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG-- 308

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
              +AL DMY+K G IDKA  +F+ +  RN ++W+ +I  +  +G+ +  I  F  M   
Sbjct: 309 ---SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKA 365

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLF-HVIK----EKDNVCWTTMIVGYTQNGKEED 306
           G+ P++V    IL AC   G +++    F H++K    +     +  M+    + G  E+
Sbjct: 366 GVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEE 425

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           A  L   M    + PD     +++ +C    +L  G+ V
Sbjct: 426 AEELIRNM---PIEPDDVIWKALLGACKMHKNLKMGERV 461



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 37/209 (17%)

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQ-NGQDL--EALALYDKLLQEN-LKPDSFTFVSV 430
           D A  VF  MP  N   WN+++   A+ N + L  EAL L+  +L +  +KP+ FTF SV
Sbjct: 69  DYARAVFRQMPEPNCFCWNTILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSV 128

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLD--------------HYACMINLLGRSSDV 476
           L AC  A     G+        +HG+                   +  C +     S   
Sbjct: 129 LKACARASRLREGKQ-------IHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFC 181

Query: 477 DKAVDL-------IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGP 528
              VD        +       N ++W+ ++      GDIK    +A++LF E+ P +   
Sbjct: 182 KNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIK----SAKNLFDEMPPRSVVS 237

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           + ++ + YA  G + +  ++   M+S N+
Sbjct: 238 WNVMISGYAQNGHFIEAINLFQEMQSSNI 266


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/642 (30%), Positives = 354/642 (55%), Gaps = 36/642 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+I  N LLS + +   +++ R +F KM ++DSV++NT I G+A  G    ++++F  M 
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI 315

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            D F P   +  S + AC Q  DL+ GK +H  ++      +    N L DMYAK G++ 
Sbjct: 316 -DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLL 374

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL------------------ 250
            A+ +FD    ++ V+WN +I+GY ++G  K+ ++ F+ M++                  
Sbjct: 375 AAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQ 434

Query: 251 ----------------LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                            G   + +  +++L    + G +DD  ++F  +   D + W T+
Sbjct: 435 LADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTV 494

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I              + NEM +E + PD+ ++  ++  C+ LA    G+ +HG     G 
Sbjct: 495 IASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGF 554

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           + ++ + +ALI+MY KCG  ++   VF  M  ++VV+W ++I+ +   G+  +AL  +  
Sbjct: 555 ESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQD 614

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +    + PDS  F++ + AC H+ + + G   FD +   + + P ++HYAC+++LL RS 
Sbjct: 615 MELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSG 674

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534
            + +A + I S+P KP++ +W  LLS C  +G+    +  ++ + EL   + G Y+++SN
Sbjct: 675 LLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSN 734

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           +YA  G+W+ V ++R+SMK+K +KK    SWIEI  +V+ F + D++  + + + + L  
Sbjct: 735 IYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEY 794

Query: 595 LIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L++ + + G+  + +  LHD +E++K   +C HSE+LA+A+ L+    G +P+ +MKN+R
Sbjct: 795 LVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPG-SPLLVMKNLR 853

Query: 655 VCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           VCGDCH   K+ + I+ R I++RD+NRFH F  G CSC D+W
Sbjct: 854 VCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 273/591 (46%), Gaps = 88/591 (14%)

Query: 52  NFYEPNTTFLHNRLLHFYAKSG-----KLFYARDLFDKMPLRDIISWNALLSAHARSGSV 106
           N  EP+  FL + LL   + +      +  ++  +   + L  I S   L+S +A+    
Sbjct: 12  NTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFS-GKLISKYAQVKDP 70

Query: 107 QDLRALFDKM-PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165
               ++F  + P  +   +N+ I    + G   +AL  ++ M++ + +P  +T  S +N+
Sbjct: 71  ISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINS 130

Query: 166 CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSW 225
           CA++LDL  G  +H   +      ++++ NAL DMY++  ++D AR++F+ M+NR+ VSW
Sbjct: 131 CARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSW 190

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------ 267
           N +ISGY  NG  +  +D++ + ++ G+ PD  T+S++L AC                  
Sbjct: 191 NSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEK 250

Query: 268 -----------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                            F+  R+ +A R+F  +  KD+V W TMI GY Q G+ E ++ L
Sbjct: 251 IGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKL 310

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F +M+   V PD  SI+S + +C +   L  G+ VH   +  G + D +  + LIDMY K
Sbjct: 311 FMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAK 369

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG    A  VF+    ++ V+WNS+INGY Q+G   E L  + K+++   KPDS TFV +
Sbjct: 370 CGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPDSVTFVLL 428

Query: 431 LSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           LS     AD+ +    H D I    G    L     ++++  +  ++D   DL+K   + 
Sbjct: 429 LSIFSQLADINQGRGIHCDVIK--FGFEAELIIGNSLLDVYAKCGEMD---DLLKVFSYM 483

Query: 490 P--NSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLS--------- 533
              + + W+T+++      D   G     EM    L   E    G   M S         
Sbjct: 484 SAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGK 543

Query: 534 ----------------------NMYAACGRWEDVASIRSSMKSKNVKKFAA 562
                                  MY+ CG  E+   +   MK K+V  + A
Sbjct: 544 EIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTA 594


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 236/711 (33%), Positives = 368/711 (51%), Gaps = 103/711 (14%)

Query: 57  NTTFLHNRLLHFYAKSGK---LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  ++L+ F   S     L YA  +F+ +   +++ WN +   HA S          
Sbjct: 32  NTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSS--------- 82

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
                 D VS                AL ++  M      P  YT    L +CA+    R
Sbjct: 83  ------DPVS----------------ALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFR 120

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS--------- 224
            G+QIHG ++      +++V  +L  MY + G ++ AR +FD+ ++R++VS         
Sbjct: 121 EGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYA 180

Query: 225 ----------------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
                                 WN MISGY + G  K+ ++LF+EM    + PDE T+ +
Sbjct: 181 SKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVS 240

Query: 263 ILGACFQT-----------------------------------GRIDDAGRLFHVIKEKD 287
           ++ AC Q+                                   G ++ A  LF  +  KD
Sbjct: 241 VVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKD 300

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W T+I GYT     ++AL+LF EML     P+  ++ S++ +CA L ++  G+ +H 
Sbjct: 301 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHV 360

Query: 348 --KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
                + GV +     ++LIDMY KCG  + A  VF+ +  R++ SWN+MI G+A +G+ 
Sbjct: 361 YINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRA 420

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             A  ++ ++ +  ++PD  TFV +LSAC H+ + + G++ F S+   + ITP L+HY C
Sbjct: 421 NAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGC 480

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLG S    +A ++I ++  +P+ +IW +LL  C M  +++ GE  A++L ++EP N
Sbjct: 481 MIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKN 540

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA  GRW +VA IR+ +  K +KK    S IEID+ VH+F+  D+ HP  
Sbjct: 541 PGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 600

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    G T
Sbjct: 601 REIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG-T 659

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 660 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/287 (28%), Positives = 139/287 (48%), Gaps = 36/287 (12%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S ++  C  +   D    A  +F  I+E + + W TM  G+  +  
Sbjct: 24  QMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSD 83

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL L+  M+S  + P+ ++   ++ SCAK  +   GQ +HG  + LG D DL V ++
Sbjct: 84  PVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTS 143

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS----------------------------- 394
           LI MY + G  +DA  VF+    R+VVS+ +                             
Sbjct: 144 LISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSW 203

Query: 395 --MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
             MI+GYA+ G + EAL L+ ++++ N++PD  T VSV+SAC  +   E G+     I  
Sbjct: 204 NAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            HG   +L     +I+L  +  +V+ A  L + L +K + + W+TL+
Sbjct: 264 -HGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK-DVISWNTLI 308



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 123/273 (45%), Gaps = 38/273 (13%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD----AWTVFNM 383
           S++ +C  L SL   +++H + +  G+ +     S LI+ +C      D    A +VF  
Sbjct: 7   SLLHNCKTLQSL---RMIHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFET 62

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +   N++ WN+M  G+A +   + AL LY  ++   L P+ +TF  +L +C  +  F  G
Sbjct: 63  IQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREG 122

Query: 444 QNHFDSISAVHGITPSLDH------YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
           Q        +HG    L +      +  +I++  ++  ++ A  +     H+ + + ++ 
Sbjct: 123 QQ-------IHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHR-DVVSYTA 174

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           L++  A KG I     +A+ +F+  PI +   +  + + YA  G  ++   +   M   N
Sbjct: 175 LITGYASKGYIA----SAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN 230

Query: 557 VKK-----------FAAYSWIEIDNKVHKFVSE 578
           V+             A  + IE+  +VH ++ +
Sbjct: 231 VRPDESTMVSVVSACAQSASIELGRQVHSWIDD 263


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 328/604 (54%), Gaps = 39/604 (6%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+ A+ + G ++D   LFD +P +D V++ T ++         +A  +   +  +  +P 
Sbjct: 49  LIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPD 108

Query: 156 DYTHVSALNACAQL--LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            +   S + ACA L  + ++ GKQ+H + ++     +  V+++L DMYAK    D  R +
Sbjct: 109 HFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAV 168

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD +   + +SW  MISGY ++G+  + ++LF+E                          
Sbjct: 169 FDSIFELSSISWTAMISGYARSGRKLEALELFRESPF----------------------- 205

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSS 332
                       K+   WT +I G  Q+G   DAL LF EM  E V   D   +SSVV +
Sbjct: 206 ------------KNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGA 253

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           CA  A    G+ VH   + LG +  L +S+AL+DMY KC     A  +F  M  ++VVSW
Sbjct: 254 CANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSW 313

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
            S+I G AQ+G   EAL LYD ++   +KP+  TFV ++ AC H  L  +G+  F S+  
Sbjct: 314 TSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVE 373

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE 512
             GI PSL HY C+++L  RS  +D+A +LI+++P KP+   W+ LLS C   G+ K   
Sbjct: 374 DFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAV 433

Query: 513 MAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
             A HL +L+P +   YI+LSN+YA  G WE+V+ +R  M  K VKK   YS +++  + 
Sbjct: 434 RIADHLLDLKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREF 493

Query: 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLA 632
             F + + + P  + I   ++KL  +++  G+ P+T  VL D  ++EK + + +HSE+LA
Sbjct: 494 QVFHAGEASQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLA 553

Query: 633 LAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           LAY L+K   G T IRI+KN+RVCGDCH  +K  S I  R I +RD  R+HHF  G CSC
Sbjct: 554 LAYGLLKAVPGTT-IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSC 612

Query: 693 KDNW 696
            D W
Sbjct: 613 NDFW 616



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 166/317 (52%), Gaps = 14/317 (4%)

Query: 26  YTQLVLDCTRVNDV--ELAKRLQSHMDLN-FYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           ++ L+  C  +  V  +L K+L +   L+ F+E +   + + L+  YAK     Y R +F
Sbjct: 112 FSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDV--VKSSLVDMYAKFELPDYGRAVF 169

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           D +     ISW A++S +ARSG   +   LF + P ++  ++   I+G    G + +AL 
Sbjct: 170 DSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALY 229

Query: 143 VFSRMQKDRFEPTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           +F  M+++     D   +S+ + ACA       GKQ+H  ++       +F+ NAL DMY
Sbjct: 230 LFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMY 289

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           AK  ++  A+++F  M  +++VSW  +I G  ++G  ++ + L+ +M L G+ P+EVT  
Sbjct: 290 AKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFV 349

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLS 316
            ++ AC   G +     LF  + E   +      +T ++  ++++G  ++A  L   M  
Sbjct: 350 GLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTM-- 407

Query: 317 EDVRPDKFSISSVVSSC 333
             V+PD+ + ++++S+C
Sbjct: 408 -PVKPDEPTWAALLSAC 423



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 137/295 (46%), Gaps = 48/295 (16%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           GLN        ++ A  + G + DA +LF  + ++D+V W T++     +     A  + 
Sbjct: 38  GLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSIS 97

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLY--HGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
             +L E ++PD F  SS++ +CA L S++   G+ +H + ++    +D +V S+L+DMY 
Sbjct: 98  LPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYA 157

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK-------- 421
           K  + D    VF+ +   + +SW +MI+GYA++G+ LEAL L+ +   +NL         
Sbjct: 158 KFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISG 217

Query: 422 ------------------------PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
                                    D     SV+ AC ++ + E G+        VH + 
Sbjct: 218 LVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQ-------VHCVV 270

Query: 458 PSLDHYAC------MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            +L + +C      ++++  + SDV  A  +   +  K + + W++++   A  G
Sbjct: 271 ITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRK-DVVSWTSIIVGTAQHG 324



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 102/236 (43%), Gaps = 50/236 (21%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H + +  G++        LID Y KCG+  DA  +F+ +P ++ V+W ++++    +  
Sbjct: 30  LHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLSNL 89

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSAC-------------LHA-------------- 437
             +A ++   +L E L+PD F F S++ AC             LHA              
Sbjct: 90  PHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVK 149

Query: 438 ----------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
                     +L + G+  FDSI  +  I+     +  MI+   RS    +A++L +  P
Sbjct: 150 SSLVDMYAKFELPDYGRAVFDSIFELSSIS-----WTAMISGYARSGRKLEALELFRESP 204

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF---ELEPINAGPYIMLSNMYAACG 540
            K N   W+ L+S     G+       A +LF     E ++    ++LS++  AC 
Sbjct: 205 FK-NLYAWTALISGLVQSGNAND----ALYLFVEMRREGVSIADPLVLSSVVGACA 255


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/658 (32%), Positives = 355/658 (53%), Gaps = 52/658 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALF----DKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           R+     AL+ ++ + GS+ D   +F    D+ P    V+ +  I+     G+ +E+L++
Sbjct: 147 REAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRL 206

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI--HGKIVVGNLGGNVFVRNALTDMY 201
           F  M  +  +P+  T VS LNAC+ L        +      VV     NV     LT  Y
Sbjct: 207 FYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLT-TY 265

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
           A+  ++ +AR  FD + + ++VSWN M + YL++ +P++ + LF+ M L G+ P   T  
Sbjct: 266 ARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFI 325

Query: 262 NILGACF--------------------------------------QTGRIDDAGRLFHVI 283
             L AC                                       + G + DA  +F  I
Sbjct: 326 TALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERI 385

Query: 284 K--EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLY 340
               +D + W +M+  Y  +G  ++A  LF  M +E  V+P+K +  +V+ +     S+ 
Sbjct: 386 SPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIA 445

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMING 398
            G+ +H + V  G + D ++ +AL++MY KCG  DDA  +F+   +   +V++W S++ G
Sbjct: 446 QGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAG 505

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
           YAQ GQ   AL L+  + Q+ ++P+  TF+S L+AC H    E+G      ++  HGI P
Sbjct: 506 YAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVP 565

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
           +  H++C+++LLGR   +D+A  L++    + + + W  LL  C    +++ GE  A  +
Sbjct: 566 ASKHFSCIVDLLGRCGRLDEAEKLLER-TSQADVITWMALLDACKNSKELERGERCAERI 624

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            +L+P  A  YI+L++MYAA GRW + A+IR +M  K ++     S +E++ ++H F + 
Sbjct: 625 MQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAG 684

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D++HP++E IY EL +L   ++ AG+  +T LVLHD  +E K + +  HSEKLA+A+ L+
Sbjct: 685 DKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLM 744

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P G +P+R++KN+RVC DCH   K  S + GR I++RDS+R+HHF  G CSC D W
Sbjct: 745 STPSG-SPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 168/594 (28%), Positives = 267/594 (44%), Gaps = 111/594 (18%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A   LV  C+ + ++   +R+ S +    +E N+  L N L+  Y+K G L  A+  FD+
Sbjct: 9   ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSV-LGNALISMYSKCGSLIDAKQAFDR 67

Query: 85  MPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           +P    RD+++WNA++SA  R+GS                               +REAL
Sbjct: 68  LPRASKRDVVTWNAMISAFLRNGS-------------------------------AREAL 96

Query: 142 QVFSRMQKDRFEPTD-YTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           Q+F  M  D   P +  T VS L++C  A LL L   + IHG+IV   +    FVR AL 
Sbjct: 97  QLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV 156

Query: 199 DMYAKGGEIDKARWLFDRMNNR----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           D Y K G +D A  +F R ++     +LV+ + MIS   +NG P++ + LF  M L G  
Sbjct: 157 DSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTK 216

Query: 255 PDEVTVSNILGACFQT---------------------------------GRIDDAGR--- 278
           P  VT+ ++L AC                                     R +D  R   
Sbjct: 217 PSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARA 276

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA---- 334
            F  I+  D V W  M   Y Q+ +  +AL+LF  ML E VRP   +  + +++CA    
Sbjct: 277 TFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPP 336

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM-PT-RNVVSW 392
           + AS   G+ +       G++ D  V++A ++MY KCG   DA  VF  + PT R+ ++W
Sbjct: 337 QTASAI-GKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITW 395

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQ------- 444
           NSM+  Y  +G   EA  L+  +  E L KP+  TFV+VL A        +G+       
Sbjct: 396 NSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVV 455

Query: 445 -NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVC 502
            N F+S + +            ++N+  +   +D A  +  KS  ++ + + W++L++  
Sbjct: 456 SNGFESDTVIQN---------ALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGY 506

Query: 503 AMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC---GRWEDVASIRSSM 552
           A  G     E A +  + ++     P +I   +   AC   G+ E    + S M
Sbjct: 507 AQYG---QAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLSGM 557



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 141/591 (23%), Positives = 251/591 (42%), Gaps = 128/591 (21%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +  ++ +NAC+ L +L  G++IH +I   +   N  + NAL  MY+K G +  A+  
Sbjct: 5   PNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQA 64

Query: 214 FDRM---NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGACFQ 269
           FDR+   + R++V+WN MIS +L+NG  ++ + LF++M   G   P+ VT  ++L +C +
Sbjct: 65  FDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVE 124

Query: 270 T-------------------------------------GRIDDAGRLFHVIKEKDN---- 288
                                                 G +DDA  +F  +++ D     
Sbjct: 125 AGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF--LRKSDEEPST 182

Query: 289 --VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346
             V  + MI    QNG  +++L LF  M  E  +P   ++ SV+++C+ L        V 
Sbjct: 183 SLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVL 242

Query: 347 GKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
            +A+ V+    D ++ + L+  Y +      A   F+ + + +VVSWN+M   Y Q+ + 
Sbjct: 243 EQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRP 302

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSAC-----------------------LHAD---- 438
            EAL L++++L E ++P   TF++ L+AC                       L  D    
Sbjct: 303 REALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVA 362

Query: 439 -----LFERGQNHFDSISAVHGITPSLDH---YACMINLLGRSSDVDKAVDLIKSLPH-- 488
                ++ +  +  D+ +    I+P+      +  M+   G      +A +L +++    
Sbjct: 363 NATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEK 422

Query: 489 --KPNSLIWSTLLSVCAMKGDIKHG-EMAARHL---FELEPI--NAGPYIMLSNMYAACG 540
             KPN + +  +L     +  I  G E+ AR +   FE + +  NA     L NMYA CG
Sbjct: 423 LVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNA-----LLNMYAKCG 477

Query: 541 RWEDVASI--RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +D  +I  +SS   ++V      +W  +     ++   +R             KL   
Sbjct: 478 SLDDAQAIFDKSSSNQEDV-----IAWTSLVAGYAQYGQAERAL-----------KLFWT 521

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK---KPHGVTP 646
           +Q+ G  PN    +          + C H  KL     L+      HG+ P
Sbjct: 522 MQQQGVRPNHITFI-------SALTACNHGGKLEQGCELLSGMTPDHGIVP 565



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 109/202 (53%), Gaps = 18/202 (8%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +VRP+  ++ ++V++C+ L +L  G+ +H +      +++ ++ +ALI MY KCG   DA
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 378 WTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSA 433
              F+ +P    R+VV+WN+MI+ + +NG   EAL L+  +  +    P+S TFVSVL +
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDS 121

Query: 434 CLHADLFERGQNHFDSISAVHG--ITPSLDHYA----CMINLLGRSSDVDKA--VDLIKS 485
           C+ A L        + + A+HG  +   ++  A     +++  G+   +D A  V L KS
Sbjct: 122 CVEAGLLS-----LEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKS 176

Query: 486 LPHKPNSLI-WSTLLSVCAMKG 506
                 SL+  S ++S C   G
Sbjct: 177 DEEPSTSLVTCSAMISACWQNG 198



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 120/273 (43%), Gaps = 61/273 (22%)

Query: 30  VLDC-TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP-- 86
           VLD  T    +   + + + +  N +E +T  + N LL+ YAK G L  A+ +FDK    
Sbjct: 434 VLDASTSRTSIAQGREIHARVVSNGFESDTV-IQNALLNMYAKCGSLDDAQAIFDKSSSN 492

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
             D+I+W +L                               +AG+A  G +  AL++F  
Sbjct: 493 QEDVIAWTSL-------------------------------VAGYAQYGQAERALKLFWT 521

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQI-------HGKIVVGNLGGNVFVRNALTD 199
           MQ+    P   T +SAL AC     L +G ++       HG IV  +   +  V     D
Sbjct: 522 MQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHG-IVPASKHFSCIV-----D 575

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMI-----SGYLKNGQPKKCIDLFQEMQLLGLN 254
           +  + G +D+A  L +R +  ++++W  ++     S  L+ G+  +C +     +++ L+
Sbjct: 576 LLGRCGRLDEAEKLLERTSQADVITWMALLDACKNSKELERGE--RCAE-----RIMQLD 628

Query: 255 PDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK 286
           P+  +   +L + +   GR ++A  +   + +K
Sbjct: 629 PEVASSYIVLASMYAAAGRWNEAATIRKTMLDK 661


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/640 (34%), Positives = 341/640 (53%), Gaps = 38/640 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRF 152
           NAL++ ++ +G + +  +LF  M  RD +S+NT I+ +       EAL+   ++ Q D  
Sbjct: 285 NALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEG 344

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T  SAL AC+    L  G+ IH  I+  +L   + + N+L  MY+K   ++    
Sbjct: 345 PPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTER 404

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +F+ M   ++VS N++  GY         + +F  M+  G+ P+ +T+ N+ G C     
Sbjct: 405 VFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGD 464

Query: 268 ------------FQTGRIDD-------------------AGRLFHVIKEKDNVCWTTMIV 296
                        QTG + D                   +  +F  I  K  + W  +I 
Sbjct: 465 LHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIA 524

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              ++G+ E+A+ LF +      + D+F ++  +SS A LASL  G  +HG +V  G+D 
Sbjct: 525 ANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGLDC 584

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D  V +A +DMY KCG  D           R    WN++I+GYA+ G   EA   +  ++
Sbjct: 585 DSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMV 644

Query: 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
               KPD  TFV++LSAC HA L ++G ++++S++   G++P + H  C+++LLGR    
Sbjct: 645 SVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKF 704

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
            +A   I  +P  PN LIW +LLS      ++  G  AA++L EL+P +   Y++LSN+Y
Sbjct: 705 AEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLY 764

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           A   RW DV  +RS MK+  + K  A SW+++ N+V  F   DR+H   E IY +L +++
Sbjct: 765 ATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFGIGDRSHMHAEKIYVKLDEIL 824

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
            KL+E G+  +T   LHDT EE+K  ++  HSEKLALAY L+  P G T IRI KN+RVC
Sbjct: 825 LKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLALAYGLLVVPEGST-IRIFKNLRVC 883

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            DCHL  K  S +  R I+LRD  RFH F  G+CSC D W
Sbjct: 884 ADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 219/487 (44%), Gaps = 49/487 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++       VQD   LFD+M  RD +S+N  I+ ++++    +   V S M+    +
Sbjct: 184 NSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVK 243

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S ++ CA    +  G  IH   V   L  +V + NAL +MY+  G++D+A  L
Sbjct: 244 PDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESL 303

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLN---PDEVTVSNILGAC-- 267
           F  M+ R+++SWN MIS Y+   Q   C++  + + QLL  +   P+ +T S+ LGAC  
Sbjct: 304 FRNMSRRDVISWNTMISSYV---QSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSS 360

Query: 268 ---FQTGR------------------------------IDDAGRLFHVIKEKDNVCWTTM 294
                 GR                              ++D  R+F  +   D V    +
Sbjct: 361 PEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVL 420

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY-HGQVVHGKAVVLG 353
             GY       +A+ +F+ M    ++P+  ++ ++  +C  L  L+ +G  +H      G
Sbjct: 421 TGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTG 480

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D  ++++LI MY  CG  + +  +F+ +  ++V+SWN++I    ++G+  EA+ L+ 
Sbjct: 481 LLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFM 540

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
                  K D F     LS+  +    E G      +S  +G+          +++ G+ 
Sbjct: 541 DSQHAGNKLDRFCLAECLSSSANLASLEEGM-QLHGLSVKNGLDCDSHVVNATMDMYGKC 599

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIML 532
             +D  +  +    H+P    W+TL+S  A  G  K  E   +H+     +   P Y+  
Sbjct: 600 GKMDCMLKTLPDPAHRPTQ-CWNTLISGYARYGYFKEAEDTFKHMVS---VGQKPDYVTF 655

Query: 533 SNMYAAC 539
             + +AC
Sbjct: 656 VALLSAC 662



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 170/377 (45%), Gaps = 36/377 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            ALL  +   G V + + LF +MP R+ VS+   +   ++ G   EAL  + RM+K+   
Sbjct: 83  TALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVM 142

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                  + ++ C  L D   G Q+   +VV  L  +V V N+L  M+     +  A  L
Sbjct: 143 CNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERL 202

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--- 270
           FDRM  R+ +SWN MIS Y       KC  +  +M+   + PD  T+ +++  C  +   
Sbjct: 203 FDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLV 262

Query: 271 --------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                           G++D+A  LF  +  +D + W TMI  Y
Sbjct: 263 ALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSY 322

Query: 299 TQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
            Q+    +AL    ++L  D   P+  + SS + +C+   +L +G+ +H   +   + + 
Sbjct: 323 VQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNV 382

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           LL+ ++L+ MY KC   +D   VF  MP  +VVS N +  GYA       A+ ++  +  
Sbjct: 383 LLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRG 442

Query: 418 ENLKPDSFTFVSVLSAC 434
             +KP+  T +++   C
Sbjct: 443 TGIKPNYITMINLQGTC 459



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 220/526 (41%), Gaps = 84/526 (15%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R S S+ TA++G A  G    A  +   M++     + +   S + AC       RG
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEH-----RG 55

Query: 176 KQ--------IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
            Q        IH       L GNV++  AL  +Y   G +  A+ LF  M  RN+VSW  
Sbjct: 56  WQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTA 115

Query: 228 MISGYLKNGQPKKCIDLFQEMQ----------------LLGLNPDE-------------- 257
           ++     NG  ++ +  ++ M+                L G   DE              
Sbjct: 116 IMVALSSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSG 175

Query: 258 ----VTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
               V+V+N L   F    R+ DA RLF  ++E+D + W  MI  Y+         I+ +
Sbjct: 176 LLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLS 235

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
           +M   +V+PD  ++ S+VS CA    +  G  +H   V  G+   + + +AL++MY   G
Sbjct: 236 DMRHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAG 295

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVL 431
             D+A ++F  M  R+V+SWN+MI+ Y Q+   +EAL    +LLQ +   P+S TF S L
Sbjct: 296 KLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSAL 355

Query: 432 SAC-----------LHADLFERGQ-----------------NHFDSISAVHGITPSLDHY 463
            AC           +HA + +R                   N  +    V    P  D  
Sbjct: 356 GACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVV 415

Query: 464 ACMINLLGRSS--DVDKAVDL---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
           +C +   G ++  DV  A+ +   ++    KPN +    L   C   GD+    M     
Sbjct: 416 SCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAY 475

Query: 519 FELEPINAGPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
                + +  YI   L  MYA CG  E    I S + +K+V  + A
Sbjct: 476 VTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNA 521


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 337/600 (56%), Gaps = 38/600 (6%)

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
           + +G    AL+VF R       P   T   AL+ACA+L DLR G+ +  +        +V
Sbjct: 85  SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           FV ++L  +YA+ G +  A  +F RM  R+ V+W+ M++G++  GQP   I +++ M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 252 GLNPDEVTVSNILGACF-----------------------------------QTGRIDDA 276
           G+  DEV +  ++ AC                                    + G +D A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            R+F ++  +++V W+ MI G+ QNG+ ++AL LF  M +  ++PD  ++ S + +C+ +
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             L  G+ VHG  +V   D + ++ +A IDMY KCG    A  +FNM+  R+++ WN+MI
Sbjct: 324 GFLKLGRSVHG-FIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
                +G+  +AL L+ ++ +  ++PD  TF S+LSA  H+ L E G+  F  +     I
Sbjct: 383 ACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKI 442

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           TP+  HY C+++LL RS  V++A DL+ S+  +P   IW  LLS C     ++ GE  A 
Sbjct: 443 TPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD 502

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           ++ EL+P + G   ++SN+YAA  +W+ V  +R  MK    KK    S IEI    H FV
Sbjct: 503 NILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFV 562

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
            ED++HP+ E I  +++KL  ++++ G+ P T+ V HD +EE K + + YHSE+LA+A+ 
Sbjct: 563 MEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFG 622

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           L+    G T + I+KN+RVCGDCH  +K+ S I  R I++RD+ RFHHF  G CSC+D W
Sbjct: 623 LLNTGPG-TRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 206/448 (45%), Gaps = 80/448 (17%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +T  +  C R+ D+   + ++       Y+ +  F+ + LLH YA+ G +  A  +F +M
Sbjct: 111 FTLALSACARLGDLRGGESVRDRAFDAGYK-DDVFVCSSLLHLYARWGAMGDAVKVFVRM 169

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P RD ++W                               +T +AGF + G   +A+Q++ 
Sbjct: 170 PRRDRVTW-------------------------------STMVAGFVSAGQPLDAIQMYR 198

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           RM++D  +  +   +  + AC    ++R G  +HG ++   +  +V    +L DMYAK G
Sbjct: 199 RMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNG 258

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A  +F  M +RN VSW+ MISG+ +NGQ  + + LF+ MQ  G+ PD   + + L 
Sbjct: 259 LLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALL 318

Query: 266 ACFQTG--------------RID--------------------DAGRLFHVIKEKDNVCW 291
           AC   G              R D                     A  LF++I ++D + W
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILW 378

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI     +G+ +DAL LF EM    +RPD  + +S++S+ +    +  G++  G+ V 
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV- 437

Query: 352 LGVDDDLLVSSA------LIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ 404
               +   ++ A      L+D+  + G+ ++A  +   M     V+ W ++++G   N +
Sbjct: 438 ----NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKK 493

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLS 432
                ++ D +L+  L+PD    ++++S
Sbjct: 494 LELGESIADNILE--LQPDDVGVLALVS 519



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 47/347 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E     ++  CT   +V +   +  H+ L             L+  YAK+G L  
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +F  M  R+ +SW+A++S                               GFA  G S
Sbjct: 263 ACRVFGLMVHRNDVSWSAMIS-------------------------------GFAQNGQS 291

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL++F  MQ    +P     VSAL AC+ +  L+ G+ +HG  +V     N  +  A 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG-FIVRRFDFNCILGTAA 350

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY+K G +  A+ LF+ +++R+L+ WN MI+    +G+ +  + LFQEM   G+ PD 
Sbjct: 351 IDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDH 410

Query: 258 VTVSNILGACFQTGRIDDA----GRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALI 309
            T +++L A   +G +++     GR+ +  K    EK  VC   ++    ++G  E+A  
Sbjct: 411 ATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLL---ARSGLVEEASD 467

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           L   M +E   P      +++S C     L  G+ +    + L  DD
Sbjct: 468 LLTSMKAE---PTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/454 (43%), Positives = 289/454 (63%), Gaps = 11/454 (2%)

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           LF EM     + D VT+  ++ A F++     A ++F ++ EKD V W ++I G+  NGK
Sbjct: 37  LFDEMP----HKDTVTLDTMITAYFES-----AYKVFELMPEKDIVAWNSVINGFALNGK 87

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +AL L+  M SE V PD F++ S++S+CA+LA+L  G+  H   V +G++ +L  ++A
Sbjct: 88  PNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNA 147

Query: 364 LIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           L+D+Y KCG   +A  +F+ M   RNVVSW S+I G A NG   EAL  +  + +E L P
Sbjct: 148 LLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMEREGLVP 207

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
              TFV VL AC H  +   G  +F  +   + I P ++HY CM++LLGR+  + +A D 
Sbjct: 208 SEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDY 267

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           I+ +P +PN++IW TLL  C + G +  G  A   L +LEP ++G Y++LSN+YA+  RW
Sbjct: 268 IQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYASEQRW 327

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
            DV  +R +M S+ V+K   YS +E+ N VH+FV  DRTHP++E IY+ L ++  KL+ A
Sbjct: 328 SDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAMKLKLA 387

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           G+ P+T  VL D +EEEK  ++ YHSEK+A+A+ LI    G TPIRI+KN+RVC DCH  
Sbjct: 388 GYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPG-TPIRIIKNLRVCADCHFA 446

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  S +  R I++RD +RFHHF  G+CSC+D W
Sbjct: 447 IKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 8/233 (3%)

Query: 60  FLHNRLLHFYAKS--GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
           ++ N +L  Y+K   G L  A  LFD+MP +D ++ + +++A+  S        +F+ MP
Sbjct: 14  YVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESAY-----KVFELMP 68

Query: 118 IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
            +D V++N+ I GFA  G   EAL ++ RM  +  EP  +T VS L+ACA+L  L  G++
Sbjct: 69  EKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRR 128

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNG 236
            H  +V   L  N+   NAL D+YAK G I +AR +FD M   RN+VSW  +I G   NG
Sbjct: 129 AHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNG 188

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
             K+ ++ F++M+  GL P E+T   +L AC   G +++    F  +KE+ ++
Sbjct: 189 FGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDI 241


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/600 (35%), Positives = 337/600 (56%), Gaps = 38/600 (6%)

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
           + +G    AL+VF R       P   T   AL+ACA+L DLR G+ +  +        +V
Sbjct: 85  SRRGSPASALRVF-RALPPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDV 143

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           FV ++L  +YA+ G +  A  +F RM  R+ V+W+ M++G++  GQP   I +++ M+  
Sbjct: 144 FVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRED 203

Query: 252 GLNPDEVTVSNILGACF-----------------------------------QTGRIDDA 276
           G+  DEV +  ++ AC                                    + G +D A
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVA 263

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            R+F ++  +++V W+ MI G+ QNG+ ++AL LF  M +  ++PD  ++ S + +C+ +
Sbjct: 264 CRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNI 323

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             L  G+ VHG  +V   D + ++ +A IDMY KCG    A  +FNM+  R+++ WN+MI
Sbjct: 324 GFLKLGRSVHG-FIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMI 382

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
                +G+  +AL L+ ++ +  ++PD  TF S+LSA  H+ L E G+  F  +     I
Sbjct: 383 ACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKI 442

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
           TP+  HY C+++LL RS  V++A DL+ S+  +P   IW  LLS C     ++ GE  A 
Sbjct: 443 TPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIAD 502

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           ++ EL+P + G   ++SN+YAA  +W+ V  +R  MK    KK    S IEI    H FV
Sbjct: 503 NILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFV 562

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
            ED++HP+ E I  +++KL  ++++ G+ P T+ V HD +EE K + + YHSE+LA+A+ 
Sbjct: 563 MEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFG 622

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           L+    G T + I+KN+RVCGDCH  +K+ S I  R I++RD+ RFHHF  G CSC+D W
Sbjct: 623 LLNTGPG-TRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 206/448 (45%), Gaps = 80/448 (17%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +T  +  C R+ D+   + ++       Y+ +  F+ + LLH YA+ G +  A  +F +M
Sbjct: 111 FTLALSACARLGDLRGGESVRDRAFDAGYK-DDVFVCSSLLHLYARWGAMGDAVKVFVRM 169

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P RD ++W                               +T +AGF + G   +A+Q++ 
Sbjct: 170 PRRDRVTW-------------------------------STMVAGFVSAGQPLDAIQMYR 198

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           RM++D  +  +   +  + AC    ++R G  +HG ++   +  +V    +L DMYAK G
Sbjct: 199 RMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNG 258

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D A  +F  M +RN VSW+ MISG+ +NGQ  + + LF+ MQ  G+ PD   + + L 
Sbjct: 259 LLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALL 318

Query: 266 ACFQTG--------------RID--------------------DAGRLFHVIKEKDNVCW 291
           AC   G              R D                     A  LF++I ++D + W
Sbjct: 319 ACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILW 378

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI     +G+ +DAL LF EM    +RPD  + +S++S+ +    +  G++  G+ V 
Sbjct: 379 NAMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMV- 437

Query: 352 LGVDDDLLVSSA------LIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQ 404
               +   ++ A      L+D+  + G+ ++A  +   M     V+ W ++++G   N +
Sbjct: 438 ----NHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKK 493

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLS 432
                ++ D +L+  L+PD    ++++S
Sbjct: 494 LELGESIADNILE--LQPDDVGVLALVS 519



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 154/347 (44%), Gaps = 47/347 (13%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E     ++  CT   +V +   +  H+ L             L+  YAK+G L  
Sbjct: 204 GVKGDEVVMIGVIQACTAARNVRMGASVHGHL-LRHGMRMDVVTATSLVDMYAKNGLLDV 262

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  +F  M  R+ +SW+A++S                               GFA  G S
Sbjct: 263 ACRVFGLMVHRNDVSWSAMIS-------------------------------GFAQNGQS 291

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL++F  MQ    +P     VSAL AC+ +  L+ G+ +HG  +V     N  +  A 
Sbjct: 292 DEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHG-FIVRRFDFNCILGTAA 350

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMY+K G +  A+ LF+ +++R+L+ WN MI+    +G+ +  + LFQEM   G+ PD 
Sbjct: 351 IDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDH 410

Query: 258 VTVSNILGACFQTGRIDDA----GRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALI 309
            T +++L A   +G +++     GR+ +  K    EK  VC   ++    ++G  E+A  
Sbjct: 411 ATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLL---ARSGLVEEASD 467

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           L   M +E   P      +++S C     L  G+ +    + L  DD
Sbjct: 468 LLTSMKAE---PTVAIWVALLSGCLNNKKLELGESIADNILELQPDD 511


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 343/607 (56%), Gaps = 41/607 (6%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK--DRF 152
           A  S    SG +    ++F ++   +S  +   I GF++     E+L +++RM    +  
Sbjct: 46  AFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYS 105

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
              +++  S L AC +LL    G+Q+HG+++  +L  + FV N++  MY   GEI+ AR 
Sbjct: 106 SGVEFSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARR 165

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FDRM NR++VSWN MI+GYLK                                    G 
Sbjct: 166 VFDRMPNRDVVSWNSMIAGYLK-----------------------------------AGE 190

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I+ A ++F  + +KD V WT+MI  Y QN     AL LF EMLS  +RPD  +I SV+S+
Sbjct: 191 IELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSA 250

Query: 333 CAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVV 390
            A L  +  G+ +H    +  ++     + SALIDMY KCG  ++A+ VF  +   RN+ 
Sbjct: 251 IADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIG 310

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
            WNSMI+G A +G   EAL ++ ++ + +++P+  TF+ +LS C H  L E GQ +F+S+
Sbjct: 311 DWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESM 370

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              + I P + HY CMI+L GR+  ++ A+ +I+++P + + L W  +LS     G I+ 
Sbjct: 371 HEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEI 430

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
           G+ AA    EL P ++  Y++LSN+YA  GRW+DVA IR  M+ + VKK A  S + ++ 
Sbjct: 431 GKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNG 490

Query: 571 KVHKF-VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSE 629
           KVH+F + ++     +  +  ++++++ +L+  G+ P+   VL D ++E K   +  HSE
Sbjct: 491 KVHEFLLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSE 550

Query: 630 KLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGN 689
           K+A+A+ LI   +   PI I+KN+RVC DCH FMK  S +  R II+RD NRFHHF  G 
Sbjct: 551 KMAIAFGLI-HINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGC 609

Query: 690 CSCKDNW 696
           CSC + W
Sbjct: 610 CSCNEYW 616



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/356 (28%), Positives = 183/356 (51%), Gaps = 25/356 (7%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG 104
           L++H+   +++P   F+ N ++  Y   G++  AR +FD+MP RD++SWN++++ + ++G
Sbjct: 136 LKTHL---WFDP---FVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAG 189

Query: 105 SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN 164
            ++  + +F+ M  +D V++ + I+ +       +AL +F  M      P     VS L+
Sbjct: 190 EIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLS 249

Query: 165 ACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNL 222
           A A L  +  GK +H  + +  +   + F+ +AL DMY+K G I+ A  +F  +++ RN+
Sbjct: 250 AIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNI 309

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
             WN MISG   +G  ++ +D+F EM+ + + P+E+T   +L  C   G +++    F  
Sbjct: 310 GDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFES 369

Query: 283 IKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           + EK  +      +  MI  + + G+ EDAL +   M  E    D  +  +++S     A
Sbjct: 370 MHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFE---ADLLAWKAILS-----A 421

Query: 338 SLYHGQVVHGKAVVLG----VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           S+ HG +  GK+  L       DD      L ++Y K G  DD   +  MM  R V
Sbjct: 422 SMKHGHIEIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGV 477


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/596 (34%), Positives = 334/596 (56%), Gaps = 37/596 (6%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ N L+H Y + G     R  FD++P++D +SW  ++S  A+ G + D R L  + P+R
Sbjct: 82  FVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVR 141

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D +S+ + IA ++    ++EA+  F  M  +   P D T +  L+AC+QL DL  G  +H
Sbjct: 142 DVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLH 201

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
             +    +  +  +  AL DMYAK G+   AR +FD +   R   SWN +I GY K+G  
Sbjct: 202 LLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGH- 260

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                             +D A  LF  ++ +D + + +MI GY
Sbjct: 261 ----------------------------------VDVARSLFDQMEVRDIITFNSMITGY 286

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             +G+  +AL+LF  M   D+R D F++ S++S+CA L +L  G+ +H    +  V+ D+
Sbjct: 287 IHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDI 346

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +AL+DMY KCG  ++A  VF  M  R+V +W +MI G A NG     L  + ++  +
Sbjct: 347 YIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCD 406

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
             +P+  ++++VL+AC H+ L   G+ +FD +  ++ I P ++HY CMI+LLGRS  +D+
Sbjct: 407 GFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 466

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A+DL+K++P +PNS+IW+++LS C +   I   + AA HL ++EP     Y+ L N+   
Sbjct: 467 AMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICID 526

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             +WED + IR  M+ + VKK A YS + +  +VHKFV  D++HP    I   L ++  +
Sbjct: 527 SRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHR 586

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIR 654
           L+ AG+SP T  V  D  EEEK +++  HSEKLA+A+ L+     + P+ I+KN+R
Sbjct: 587 LKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNL-PVHIIKNLR 641



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 247/519 (47%), Gaps = 43/519 (8%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            +AL++ +    S     +LF ++P++++   N  + G  N   + E +  F  M++   E
Sbjct: 770  SALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLE 829

Query: 154  PTDYTHVSALNACAQLLD-LRRGKQIHGKIV-VGNLGGNVFVRNALTDMY-AKGGEIDKA 210
                ++  A+  C Q  + L +G+Q+HG ++  G +  N+F+ N+L D+Y A G  +D  
Sbjct: 830  LNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTV 889

Query: 211  RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
            + L D ++  +++SWN ++S Y   G  K+ +   ++M   G  P   +  ++L    +T
Sbjct: 890  KALNDILSE-DVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKT 948

Query: 271  GRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNE------------ 313
            G      ++  ++ +    C      TT+I  Y +    + +L +FNE            
Sbjct: 949  GDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSL 1008

Query: 314  -------------------MLSEDVRPDKFSISSVVSSCAKLAS--LYHGQVVHGKAVVL 352
                               M+ E V PD  + S+ + + +  AS  L   Q++H   V L
Sbjct: 1009 ITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKL 1068

Query: 353  GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            G + D+ V S+LI  Y   G    +  +F  +   NV+ + ++I+  A+ G    A+ L+
Sbjct: 1069 GFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELF 1128

Query: 413  DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            D+++   LKPD+ TF+  ++ C  A +FE G+   + + A   + P   H+ACM+NLL R
Sbjct: 1129 DQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASRELDPDERHFACMVNLLSR 1188

Query: 473  SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
               V +A+++++  P +  +  WS+LL  C   G+   G+ AA  L ++   +    + +
Sbjct: 1189 DGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRAANMLIDVGRKDPATTLQV 1248

Query: 533  SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
            SN +   G  E    I+     K VKK + +S IE+ ++
Sbjct: 1249 SNFFNDIGDRETALRIKEMTNVKEVKK-SGHSLIEVSHR 1286



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 181/342 (52%), Gaps = 23/342 (6%)

Query: 6   KLRQAID---TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           + ++A+D    + S G A  +     ++  C+++ D+EL   L     L   E   +   
Sbjct: 158 RAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLH----LLVKEKGMSMSE 213

Query: 63  N---RLLHFYAKSGKLFYARDLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           N    L+  YAK G   +AR++FD +   R   SWNA++  + + G V   R+LFD+M +
Sbjct: 214 NLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEV 273

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           RD +++N+ I G+ + G  REAL +F  M++      ++T VS L+ACA L  L +G+ +
Sbjct: 274 RDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRAL 333

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  I +  +  ++++  AL DMY K G +++A  +F RM  R++ +W  MI+G   NG  
Sbjct: 334 HACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMG 393

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGAC-----FQTGRI--DDAGRLFHVIKEKDNVCW 291
           K  ++ F +M+  G  P+ V+   +L AC        GR+  D+   L+++  + ++  +
Sbjct: 394 KAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEH--Y 451

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
             MI    ++G  ++A+ L   M    ++P+    +S++S+C
Sbjct: 452 GCMIDLLGRSGLLDEAMDLVKTM---PMQPNSVIWASILSAC 490



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/445 (22%), Positives = 169/445 (37%), Gaps = 72/445 (16%)

Query: 116  MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
            M +RD  S N  I GF   G +  A  V+  M       T +T  + L  C+    L   
Sbjct: 695  MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCSTYEAL--- 751

Query: 176  KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             Q+HG+++   L  N FV +AL + Y        A  LF  +  +N    N+++ G    
Sbjct: 752  -QLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL 810

Query: 236  GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH--VIK--------- 284
               ++ I  F +M+   L  + ++    +  C+Q G   + GR  H  V+K         
Sbjct: 811  KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 870

Query: 285  --------------------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318
                                       +D + W +++  Y   G  ++A+    +ML   
Sbjct: 871  LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 930

Query: 319  VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDA 377
              P   S  S+++   K      G  +HG    LG     + V + LIDMY KC   D +
Sbjct: 931  KMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS 990

Query: 378  WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
              +FN +P+  +   NS+I           AL +   ++ E + PD  TF + + A    
Sbjct: 991  LAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAI--- 1047

Query: 438  DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK-------- 489
                       S+SA   +T     ++C++  LG   D+     LI +            
Sbjct: 1048 -----------SLSASPSLTSCQMLHSCLVK-LGFEMDMAVCSSLITAYACAGQLSSSHL 1095

Query: 490  -------PNSLIWSTLLSVCAMKGD 507
                   PN + ++ ++S CA  GD
Sbjct: 1096 IFEGLLDPNVICFTAIISACARYGD 1120



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 48/260 (18%)

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSI------SSVVSSCAKLASLYHGQVVHGKAVVL 352
           T +G  +   +LF  M    VRPD F+       SS     A L ++ H   +      +
Sbjct: 20  TSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLR----TM 75

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG--------- 403
                  V+++LI MY + G+  D    F+ +P ++ VSW  +I+G A+ G         
Sbjct: 76  LPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLL 135

Query: 404 -----QDL-----------------EALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
                +D+                 EA+  +  +L E + PD  T + VLSAC      E
Sbjct: 136 AQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLE 195

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G +    +    G++ S +    +I++  +  D   A ++  ++        W+ ++  
Sbjct: 196 LGCS-LHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAII-- 252

Query: 502 CAMKGDIKHGEM-AARHLFE 520
               G  KHG +  AR LF+
Sbjct: 253 ---DGYCKHGHVDVARSLFD 269



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/230 (20%), Positives = 104/230 (45%), Gaps = 12/230 (5%)

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           +D      MI G+ ++G  + A  ++  M++  +R    + S+++  C    S Y    +
Sbjct: 698 RDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVC----STYEALQL 753

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           HG+ + LG+  +  V SAL++ Y        A ++F  +P +N    N ++ G       
Sbjct: 754 HGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNLKLT 813

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYA 464
            E +  +  + ++ L+ +  ++   +  C    +  E+G+     +     I  ++    
Sbjct: 814 EELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSN 873

Query: 465 CMINL---LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
            +++L   +G S D  KA++ I S     + + W+++LS+ A +G +K  
Sbjct: 874 SLVDLYSAIGDSVDTVKALNDILS----EDVISWNSILSMYADRGHMKEA 919


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/648 (35%), Positives = 363/648 (56%), Gaps = 47/648 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQ-K 149
           N L+  +A+ G + D    F + P    R+ VS+N  + G+A  G +  A  +   MQ +
Sbjct: 204 NVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQME 263

Query: 150 DRFEPTD-YTHVSALNACAQLLDLRRGKQIHGKIVVG--NLGGNVFVRNALTDMYAKGGE 206
           +R  P D  T +S L  C+ L +L + +++H  +V    +L G++ V NAL   Y + G 
Sbjct: 264 ERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDM-VPNALIAAYGRCGC 322

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILG 265
           +  A  +FD + ++ + SWN +I  + +NG+    I+LF+EM    G  PD  ++ ++L 
Sbjct: 323 LLHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLL 382

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                    Q GR   A  LF  ++EKD V 
Sbjct: 383 ACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVS 442

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVR--PDKFSISSVVSSCAKLASLYHGQVVHGK 348
           W TMI GY+QNG   ++L LF EM S+     P   + +S + +C++L ++  G+ +H  
Sbjct: 443 WNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCF 502

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           A+   + +D  +SS++IDMY KCG  DDA   F+ +  ++ VSW  MI GYA NG+  EA
Sbjct: 503 ALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEA 562

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           + LYDK+ +E ++PD FT++ +L AC HA + E G   F  +  +  I   L+HYAC+I 
Sbjct: 563 VGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIG 622

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           +L R+     AV L++ +P +P++ I S++LS C M G+++ G+  A  L ELEP  A  
Sbjct: 623 MLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKVADKLLELEPHKAEH 682

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++ SNMYA   +W+++  +R  ++   V K    SWI+I  KV+ FV+ + + PE   +
Sbjct: 683 YVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYSFVAGENSLPEMHKV 742

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
            +    L +K++ AG++P+T ++LH+ +EEEKV+++ +HSEK A+A+ L++   G T +R
Sbjct: 743 RKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIAFGLLRTA-GPTKVR 801

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KNIR+C DCH   K  S +  R I++RD  RFHHF  G CSC D W
Sbjct: 802 VFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDYW 849



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 197/461 (42%), Gaps = 72/461 (15%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           +  RG  A E     ++  C+ + ++   + L + +           + N L+  Y + G
Sbjct: 262 MEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCG 321

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            L +A  +FD +  + + SWNAL+ AHA++G                             
Sbjct: 322 CLLHACRVFDGICSKMVSSWNALIGAHAQNGE---------------------------- 353

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHV-SALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
              +  A+++F  M     +  D+  + S L AC  L  L  GK  HG I+   L  + F
Sbjct: 354 ---ASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSF 410

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ--- 249
           +R +L  +Y + G    AR LFD +  ++ VSWN MI+GY +NG P + + LF+EMQ   
Sbjct: 411 IRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKK 470

Query: 250 ------LLGLNPDEVTVSNI----LGA---CF---------------------QTGRIDD 275
                 LL      V  S +    LG    CF                     + G +DD
Sbjct: 471 GGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDD 530

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A   F  +K KD V WT MI GY  NG+ ++A+ L+++M  E + PD F+   ++ +C  
Sbjct: 531 ARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGH 590

Query: 336 LASLYHGQVVHGKAVVLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
              L  G     +   L  ++  L   + +I M  + G   DA  +  +MP   +    +
Sbjct: 591 AGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILS 650

Query: 394 SMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSA 433
           S+++    +G+      + DKLL+ E  K + +   S + A
Sbjct: 651 SVLSACHMHGEVELGKKVADKLLELEPHKAEHYVLASNMYA 691



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 171/361 (47%), Gaps = 59/361 (16%)

Query: 124 YNTAIAGFANKGFSREALQVFSRM--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           +N  +A  +  G   +AL +  R+    D   P  +T   AL +C        G+Q+H  
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSCRG----DDGRQVHA- 87

Query: 182 IVVGNLG---GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
            V   LG   G+ FV N+L  MY + G +D A  +F+ M  RNLVSWN +++       P
Sbjct: 88  -VAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAV---ADP 143

Query: 239 KKCIDLFQE-MQLLG--LNPDEVTVSNILGACF-----QTGRI----------DDAGRLF 280
           ++ ++LF++ ++ LG    PDE T+  +L  C      +TGR           D A R+ 
Sbjct: 144 RRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVS 203

Query: 281 HVIKE-----------------------KDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           +V+ +                       ++ V W  M+ GY +NG+   A  L  EM  E
Sbjct: 204 NVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQME 263

Query: 318 D--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVT 374
           +  V  D+ ++ SV+  C+ L  L   + +H   V  G+     +V +ALI  Y +CG  
Sbjct: 264 ERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCL 323

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSA 433
             A  VF+ + ++ V SWN++I  +AQNG+   A+ L+ ++      KPD F+  S+L A
Sbjct: 324 LHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLA 383

Query: 434 C 434
           C
Sbjct: 384 C 384



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 152/339 (44%), Gaps = 54/339 (15%)

Query: 251 LGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
           LGL   +  V N L + + + GR+DDA ++F  +  ++ V W  ++       +    L 
Sbjct: 92  LGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVADPRR---GLE 148

Query: 310 LFNEMLSE---DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           LF + L +      PD+ ++ +V+  CA LA    G+ VHG AV  G D    VS+ L+D
Sbjct: 149 LFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVLVD 208

Query: 367 MYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLK 421
           MY KCG   DA   F   P    RNVVSWN M+ GYA+NG+   A  L  ++  E   + 
Sbjct: 209 MYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERGVP 268

Query: 422 PDSFTFVSVLSAC-----------LHADLFERGQNHF-----DSISAVHGITPSLDHYAC 465
            D  T +SVL  C           LHA +  RG +       +++ A +G    L H AC
Sbjct: 269 ADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLH-AC 327

Query: 466 ----------------MINLLGRSSDVDKAVDLIKSLP----HKPNSLIWSTLLSVCAMK 505
                           +I    ++ +   A++L + +      KP+     +LL  C   
Sbjct: 328 RVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNL 387

Query: 506 GDIKHGEMAARHLFELE-PINAGPYIMLS--NMYAACGR 541
             + HG+ A  H F L   +    +I +S  ++Y  CGR
Sbjct: 388 KHLLHGKAA--HGFILRNGLEKDSFIRVSLLSVYIQCGR 424


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 352/646 (54%), Gaps = 45/646 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  + + G +   R +F+     DSVS+N+ IAG+   G + E L++  +M +    
Sbjct: 80  NSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLN 139

Query: 154 PTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              Y   SAL AC       +  GK +HG  V   L  +V V  AL D YAK G+++ A 
Sbjct: 140 LNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDAT 199

Query: 212 WLFDRMNNRNLVSWNLMISGYLK-----NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            +F  M + N+V +N MI+G+L+     +    + + LF EMQ  G+ P E T S+IL A
Sbjct: 200 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 259

Query: 267 C-----FQTGR------------------------------IDDAGRLFHVIKEKDNVCW 291
           C     F+ G+                              I+D  + FH   + D V W
Sbjct: 260 CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSW 319

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T++IVG+ QNG+ E  L LF+E+L    +PD+F+IS ++S+CA LA++  G+ +H  A+ 
Sbjct: 320 TSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIK 379

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+ +  ++ ++ I MY KCG  D A   F      ++VSW+ MI+  AQ+G   EA+ L
Sbjct: 380 TGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDL 439

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++ +    + P+  TF+ VL AC H  L E G  +F+ +   HGITP++ H AC+++LLG
Sbjct: 440 FELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLG 499

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  + +A   I     + + ++W +LLS C +      G+  A  + ELEP  A  Y++
Sbjct: 500 RAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVL 559

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L N+Y   G       IR+ MK + VKK    SWIE+ N VH FV+ DR+HP +++IY +
Sbjct: 560 LYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQ 619

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS-ICYHSEKLALAYCLIKKPHGVTPIRIM 650
           L ++++++++  +  + KLV   ++ + K  S + YHSEKLA+ + +I  P    P+R+M
Sbjct: 620 LEEMLEEIKKLDY-IDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRS-APVRVM 677

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R C  CH  MK  S +  R IILRD  RFH F  G+CSC D W
Sbjct: 678 KNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 216/450 (48%), Gaps = 52/450 (11%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R+ VS+N+ I+G+   GF  E + +F   +        +T  +AL+ C + LDLR G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           + IH  I V  LGG V + N+L DMY K G ID AR +F+  +  + VSWN +I+GY++ 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
           G   + + L  +M   GLN +   + + L AC                            
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 268 ---------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED-----ALILFNE 313
                     + G ++DA ++F ++ + + V +  MI G+ Q     D     A+ LF E
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M S  ++P +F+ SS++ +C+ + +   G+ +H +     +  D  + +AL+++Y   G 
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            +D    F+  P  +VVSW S+I G+ QNGQ    L L+ +LL    KPD FT   +LSA
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 434 CLHADLFERG-QNHFDSI-SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           C +    + G Q H  +I + +   T   +   CM     +  D+D A    K   + P+
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICM---YAKCGDIDSANMTFKETKN-PD 416

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
            + WS ++S  A  G  K     A  LFEL
Sbjct: 417 IVSWSVMISSNAQHGCAKE----AVDLFEL 442



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 141/513 (27%), Positives = 225/513 (43%), Gaps = 110/513 (21%)

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT------ 270
           M  RN+VSWN +ISGY + G   + ++LF+E ++  L  D+ T SN L  C +T      
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 271 -----------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                        GRID A  +F    E D+V W ++I GY + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK--LASLYHGQVVHGKAVVLGVDDDLL 359
           G  ++ L L  +ML   +  + +++ S + +C     +S+  G+++HG AV LG+D D++
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL-----EALALYDK 414
           V +AL+D Y K G  +DA  +F +MP  NVV +N+MI G+ Q          EA+ L+ +
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQ-------------NHF-------------- 447
           +    +KP  FTF S+L AC   + FE G+             + F              
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 448 --DSISAVHGITPSLDHYACMINLLG--RSSDVDKAVDLIKSL---PHKPNSLIWSTLLS 500
             D +   H  TP LD  +    ++G  ++   +  + L   L     KP+    S +LS
Sbjct: 301 IEDGLKCFHS-TPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWEDVASIRSSMKSKN 556
            CA    +K GE    H + ++    G + ++ N    MYA CG   D+ S  ++M  K 
Sbjct: 360 ACANLAAVKSGEQI--HAYAIKT-GIGNFTIIQNSQICMYAKCG---DIDS--ANMTFKE 411

Query: 557 VKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ 616
            K     SW          +S +  H       +E   L + ++ +G +PN    L    
Sbjct: 412 TKNPDIVSW-------SVMISSNAQHG----CAKEAVDLFELMKGSGIAPNHITFL---- 456

Query: 617 EEEKVKSICYHS---EKLALAYCLIKKPHGVTP 646
               V   C H    E+    + ++KK HG+TP
Sbjct: 457 ---GVLVACSHGGLVEEGLRYFEIMKKDHGITP 486



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 136/297 (45%), Gaps = 46/297 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN-----KGFSREALQV 143
           D++   ALL  +A+ G ++D   +F  MP  + V YN  IAGF         F+ EA+ +
Sbjct: 178 DVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYL 237

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  MQ    +P+++T  S L AC+ +     GKQIH +I   NL  + F+ NAL ++Y+ 
Sbjct: 238 FFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSL 297

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I+     F      ++VSW  +I G+++NGQ +  + LF E+   G  PDE T+S +
Sbjct: 298 SGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIM 357

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L AC                                    + G ID A   F   K  D 
Sbjct: 358 LSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDI 417

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           V W+ MI    Q+G  ++A+ LF  M    + P+  +   V+ +C+      HG +V
Sbjct: 418 VSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACS------HGGLV 468


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/646 (34%), Positives = 352/646 (54%), Gaps = 45/646 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L+  + + G +   R +F+     DSVS+N+ IAG+   G + E L++  +M +    
Sbjct: 159 NSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLN 218

Query: 154 PTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
              Y   SAL AC       +  GK +HG  V   L  +V V  AL D YAK G+++ A 
Sbjct: 219 LNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDAT 278

Query: 212 WLFDRMNNRNLVSWNLMISGYLK-----NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
            +F  M + N+V +N MI+G+L+     +    + + LF EMQ  G+ P E T S+IL A
Sbjct: 279 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 338

Query: 267 C-----FQTGR------------------------------IDDAGRLFHVIKEKDNVCW 291
           C     F+ G+                              I+D  + FH   + D V W
Sbjct: 339 CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSW 398

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T++IVG+ QNG+ E  L LF+E+L    +PD+F+IS ++S+CA LA++  G+ +H  A+ 
Sbjct: 399 TSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIK 458

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+ +  ++ ++ I MY KCG  D A   F      ++VSW+ MI+  AQ+G   EA+ L
Sbjct: 459 TGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDL 518

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           ++ +    + P+  TF+ VL AC H  L E G  +F+ +   HGITP++ H AC+++LLG
Sbjct: 519 FELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLG 578

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R+  + +A   I     + + ++W +LLS C +      G+  A  + ELEP  A  Y++
Sbjct: 579 RAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVL 638

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           L N+Y   G       IR+ MK + VKK    SWIE+ N VH FV+ DR+HP +++IY +
Sbjct: 639 LYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVIYVQ 698

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS-ICYHSEKLALAYCLIKKPHGVTPIRIM 650
           L ++++++++  +  + KLV   ++ + K  S + YHSEKLA+ + +I  P    P+R+M
Sbjct: 699 LEEMLEEIKKLDYI-DEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRS-APVRVM 756

Query: 651 KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KN+R C  CH  MK  S +  R IILRD  RFH F  G+CSC D W
Sbjct: 757 KNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 160/551 (29%), Positives = 250/551 (45%), Gaps = 84/551 (15%)

Query: 15  YSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGK 74
           Y  G       YT+LV   TR   +   K    HM    ++P   FL N LL+ Y K G+
Sbjct: 11  YYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKP-CLFLLNNLLYMYCKCGE 69

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
              A+ LFD+MP R+++SWN+L+S                               G+   
Sbjct: 70  TDVAKKLFDRMPKRNVVSWNSLIS-------------------------------GYTQM 98

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           GF  E + +F   +        +T  +AL+ C + LDLR G+ IH  I V  LGG V + 
Sbjct: 99  GFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLT 158

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N+L DMY K G ID AR +F+  +  + VSWN +I+GY++ G   + + L  +M   GLN
Sbjct: 159 NSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLN 218

Query: 255 PDEVTVSNILGAC-------------------------------------FQTGRIDDAG 277
            +   + + L AC                                      + G ++DA 
Sbjct: 219 LNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDAT 278

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEED-----ALILFNEMLSEDVRPDKFSISSVVSS 332
           ++F ++ + + V +  MI G+ Q     D     A+ LF EM S  ++P +F+ SS++ +
Sbjct: 279 KIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKA 338

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C+ + +   G+ +H +     +  D  + +AL+++Y   G  +D    F+  P  +VVSW
Sbjct: 339 CSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSW 398

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSI- 450
            S+I G+ QNGQ    L L+ +LL    KPD FT   +LSAC +    + G Q H  +I 
Sbjct: 399 TSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIK 458

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
           + +   T   +   CM     +  D+D A    K   + P+ + WS ++S  A  G  K 
Sbjct: 459 TGIGNFTIIQNSQICM---YAKCGDIDSANMTFKETKN-PDIVSWSVMISSNAQHGCAKE 514

Query: 511 GEMAARHLFEL 521
               A  LFEL
Sbjct: 515 ----AVDLFEL 521



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 165/581 (28%), Positives = 256/581 (44%), Gaps = 119/581 (20%)

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKI-----VVGNLGGNVFVRNALTDMYAKGGEID 208
           P D    + L  C+     R G  IHGK+     +       +F+ N L  MY K GE D
Sbjct: 16  PLDSVTYTKLVQCST----RTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETD 71

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ LFDRM  RN+VSWN +ISGY + G   + ++LF+E ++  L  D+ T SN L  C 
Sbjct: 72  VAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG 131

Query: 269 QT-----------------------------------GRIDDAGRLFHVIKEKDNVCWTT 293
           +T                                   GRID A  +F    E D+V W +
Sbjct: 132 RTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNS 191

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK--LASLYHGQVVHGKAVV 351
           +I GY + G  ++ L L  +ML   +  + +++ S + +C     +S+  G+++HG AV 
Sbjct: 192 LIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVK 251

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL----- 406
           LG+D D++V +AL+D Y K G  +DA  +F +MP  NVV +N+MI G+ Q          
Sbjct: 252 LGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFAN 311

Query: 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-------------NHF------ 447
           EA+ L+ ++    +KP  FTF S+L AC   + FE G+             + F      
Sbjct: 312 EAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALV 371

Query: 448 ----------DSISAVHGITPSLDHYACMINLLG--RSSDVDKAVDLIKSL---PHKPNS 492
                     D +   H  TP LD  +    ++G  ++   +  + L   L     KP+ 
Sbjct: 372 ELYSLSGSIEDGLKCFHS-TPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDE 430

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN----MYAACGRWEDVASI 548
              S +LS CA    +K GE    H + ++    G + ++ N    MYA CG   D+ S 
Sbjct: 431 FTISIMLSACANLAAVKSGEQI--HAYAIK-TGIGNFTIIQNSQICMYAKCG---DIDS- 483

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNT 608
            ++M  K  K     SW          +S +  H       +E   L + ++ +G +PN 
Sbjct: 484 -ANMTFKETKNPDIVSW-------SVMISSNAQHG----CAKEAVDLFELMKGSGIAPNH 531

Query: 609 KLVLHDTQEEEKVKSICYHS---EKLALAYCLIKKPHGVTP 646
              L        V   C H    E+    + ++KK HG+TP
Sbjct: 532 ITFL-------GVLVACSHGGLVEEGLRYFEIMKKDHGITP 565



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 176/393 (44%), Gaps = 54/393 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + SRG   +E  ++ ++  C+ +   E  K++ + +   +   +  F+ N L+  Y+ SG
Sbjct: 320 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQI-FKYNLQSDEFIGNALVELYSLSG 378

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +      F   P  D++SW +L+  H ++G  +    LF ++                 
Sbjct: 379 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL----------------- 421

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
                    +FS  + D F     T    L+ACA L  ++ G+QIH   +   +G    +
Sbjct: 422 ---------LFSGRKPDEF-----TISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 467

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
           +N+   MYAK G+ID A   F    N ++VSW++MIS   ++G  K+ +DLF+ M+  G+
Sbjct: 468 QNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGI 527

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--------KDNVCWTTMIVGYTQNGKEE 305
            P+ +T   +L AC   G +++  R F ++K+        K + C   ++ G      E 
Sbjct: 528 APNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLL-GRAGRLAEA 586

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           ++ I     +      D     S++S+C    +   G+ V  +  V+ ++ +   S  L+
Sbjct: 587 ESFI-----MDSGFEGDPVMWRSLLSACRVHKATDTGKRVAER--VIELEPEAAASYVLL 639

Query: 366 -DMYCKCGVTDDAWTVFNMMPTRNV-----VSW 392
            ++Y   G+   A  + N+M  R V     +SW
Sbjct: 640 YNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSW 672


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/660 (33%), Positives = 356/660 (53%), Gaps = 50/660 (7%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GKL +A  +  ++ L  ++   AL+  + +  S++D   +       D   +   I+GF 
Sbjct: 235 GKLVHAHLMMWRIELNLVLK-TALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFT 293

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
                REA+  F  M+     P ++T+   LNAC+ +L L  GKQIH ++V+  L  +V 
Sbjct: 294 QSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVS 353

Query: 193 VRNALTDMYAK-GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           V N+L DMY K    I+ A   F  + + N++SW  +I+G+ ++G  ++ I +F  MQ +
Sbjct: 354 VGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGV 413

Query: 252 GLNPDEVTVSNILGAC------FQT-----------------------------GRIDDA 276
           G+ P+  T+S ILGAC       QT                             G +DDA
Sbjct: 414 GVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDA 473

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             +  ++K +D + +T++     Q G  E AL +   M  +DVR D FS++S +S+ A +
Sbjct: 474 WHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGI 533

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             +  G+ +H  +V  G+   + VS+ L+D+Y KCG   DA   F  +   + VSWN +I
Sbjct: 534 PIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLI 593

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            G A NG    AL+ ++ +    ++PD  T + VL AC H  L + G ++F S+   HGI
Sbjct: 594 FGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGI 653

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P LDHY C+++LLGR+  +++A+++I+++P KP++LI+ TLL  C + G+I  GE  AR
Sbjct: 654 RPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMAR 713

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
              EL+P +   Y++L+N+Y   GR E     R  M+ + V+K    SW+E  N VH F 
Sbjct: 714 QGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFT 773

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + D +HP+   I+E++  LI + +  G               ++ +++ +HSEKLA+A+ 
Sbjct: 774 AGDTSHPQIGKIHEKIESLIAQFRNQGI------------WYQENRALAHHSEKLAVAFG 821

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           LI  P    PIRI+KNIR+C DCH F+   + ++ R II+RD NRFH F  G CSC+  W
Sbjct: 822 LISTPPK-APIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 202/410 (49%), Gaps = 66/410 (16%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           FL N LL  Y K   +  AR LFD+MP RD+ SW  L+SA+ + G+ ++   LFD M I 
Sbjct: 51  FLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLIS 110

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                             P ++T  +AL +C+ L +   G +  
Sbjct: 111 GEY-------------------------------PNEFTLSTALRSCSALREFNHGTRFQ 139

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +       N  + +AL D Y+K G   +A  +F+ MNN ++VSW +M+S +++ G   
Sbjct: 140 ALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWS 199

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTG---------------------------- 271
           + + L+  M   G+ P+E T   +L A    G                            
Sbjct: 200 QALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVD 259

Query: 272 ------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
                  I+DA ++  +  E D   WT +I G+TQ+ K  +A+  F+EM +  V P+ F+
Sbjct: 260 MYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFT 319

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMM 384
            S ++++C+ + +L  G+ +H + V+ G+++D+ V ++L+DMY KC  + +DA   F  +
Sbjct: 320 YSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGI 379

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
            + NV+SW S+I G++++G + E++ ++  +    ++P+SFT  ++L AC
Sbjct: 380 ASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 247/537 (45%), Gaps = 73/537 (13%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +  D++   G+   E   +  +  C+ + +     R Q+ +  + ++ N   L + L+ F
Sbjct: 102 ELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPV-LGSALIDF 160

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y+K G    A  +F+ M   DI+SW  ++S+   +GS                       
Sbjct: 161 YSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWS--------------------- 199

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
                     +ALQ++ RM +    P ++T V  L A +  L L  GK +H  +++  + 
Sbjct: 200 ----------QALQLYHRMIQTGVAPNEFTFVKLL-AASSFLGLNYGKLVHAHLMMWRIE 248

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+ ++ AL DMY K   I+ A  +       ++  W  +ISG+ ++ + ++ I  F EM
Sbjct: 249 LNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEM 308

Query: 249 QLLGLNPDEVTVSNILGACFQ------------------------------------TGR 272
           +  G+ P+  T S IL AC                                      +  
Sbjct: 309 ETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNM 368

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           I+DA R F  I   + + WT++I G++++G EE+++ +F  M    VRP+ F++S+++ +
Sbjct: 369 IEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGA 428

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392
           C  + SL   + +HG  +    D+D++V +AL+D Y   G+ DDAW V +MM  R+V+++
Sbjct: 429 CGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITY 488

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSIS 451
            S+     Q G    AL +   + +++++ D F+  S LSA     + E G Q H  S+ 
Sbjct: 489 TSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVK 548

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
           +  G   S+ +   +++L G+   +  A      +  +P+++ W+ L+   A  G +
Sbjct: 549 SGLGSWISVSN--GLVDLYGKCGCIHDAHRSFLEIT-EPDAVSWNGLIFGLASNGHV 602



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 212/464 (45%), Gaps = 77/464 (16%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           +R G  IH  I+      ++F+ N L  +Y K   + +AR LFD M  R++ SW +++S 
Sbjct: 31  VRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSA 90

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----------FQT---------- 270
           Y K G  ++ ++LF  M + G  P+E T+S  L +C           FQ           
Sbjct: 91  YGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSN 150

Query: 271 --------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                         G   +A R+F  +   D V WT M+  + + G    AL L++ M+ 
Sbjct: 151 PVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQ 210

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
             V P++F+   ++++ + L  L +G++VH   ++  ++ +L++ +AL+DMYCKC   +D
Sbjct: 211 TGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIED 269

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-- 434
           A  V  +    +V  W ++I+G+ Q+ +  EA+  + ++    + P++FT+  +L+AC  
Sbjct: 270 AVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSS 329

Query: 435 ---------LHA------------------DLFERGQNHF-DSISAVHGI-TPSLDHYAC 465
                    +H+                  D++ +  N   D++ A  GI +P++  +  
Sbjct: 330 ILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTS 389

Query: 466 MINLL---GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           +I      G   +  K    ++ +  +PNS   ST+L  C   G IK      +    + 
Sbjct: 390 LIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC---GTIKSLTQTRKLHGYII 446

Query: 523 PINAGPYIMLSN----MYAACGRWEDVASIRSSMKSKNVKKFAA 562
             NA   +++ N     YA  G  +D   + S MK ++V  + +
Sbjct: 447 KNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTS 490



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 63/126 (50%), Gaps = 4/126 (3%)

Query: 321 PDKFSIS---SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           P K   S    +VS C    S+  G  +H   + +G  +D+ +S+ L+ +Y KC    +A
Sbjct: 11  PSKIEYSLLKDIVSFCNS-RSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEA 69

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             +F+ MP R+V SW  +++ Y + G   EAL L+D +L     P+ FT  + L +C   
Sbjct: 70  RQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSAL 129

Query: 438 DLFERG 443
             F  G
Sbjct: 130 REFNHG 135


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/576 (36%), Positives = 316/576 (54%), Gaps = 41/576 (7%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           YN  I G +       +   + +  +    P + TH   + ACAQL +   G Q HG+ +
Sbjct: 85  YNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAI 144

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
                 + +V+N+L  MYA  G+I+ AR +F RM   ++VSW  MI+GY + G  K   +
Sbjct: 145 KHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARE 204

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           LF  M                                    E++ V W+TMI GY +N  
Sbjct: 205 LFDRM-----------------------------------PERNLVTWSTMISGYARNNC 229

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            E A+  F  + +E V  ++  +  V+SSCA L +L  G+  H   +   +  +L++ +A
Sbjct: 230 FEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTA 289

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           ++DMY +CG  + A  VF  +P ++V+ W ++I G A +G   +AL  + ++ ++   P 
Sbjct: 290 VVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPR 349

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TF +VL+AC HA + ERG   F+S+   HG+ P L+HY CM++LLGR+  + KA   +
Sbjct: 350 DITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFV 409

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             +P KPN+ IW  LL  C +  +++ GE   + L E++P  +G Y++LSN+YA   +W+
Sbjct: 410 LKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWK 469

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI---IYEELSKLIKKLQ 600
           DV  +R  MK K V+K   YS IEID KVH+F   D+THPE E    I+E++  ++ K++
Sbjct: 470 DVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDI--ILPKIK 527

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
            AG+  NT   + D  EEEK  ++  HSEKLA+AY ++ K    TPIRI+KN+RVC DCH
Sbjct: 528 LAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIM-KIRAPTPIRIVKNLRVCEDCH 586

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              K  S +    +I+RD NRFHHF  G CSC D W
Sbjct: 587 TATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 138/261 (52%), Gaps = 1/261 (0%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           LV  C ++ +  +  +       + +E +  ++ N L+H YA  G +  AR +F +M   
Sbjct: 123 LVKACAQLENAPMGMQTHGQAIKHGFEQDF-YVQNSLVHMYASVGDINAARSVFQRMCRF 181

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++SW  +++ + R G  +  R LFD+MP R+ V+++T I+G+A      +A++ F  +Q
Sbjct: 182 DVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ 241

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +     +   V  +++CA L  L  G++ H  ++   L  N+ +  A+ DMYA+ G ++
Sbjct: 242 AEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVE 301

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KA  +F+++  ++++ W  +I+G   +G  +K +  F EM   G  P ++T + +L AC 
Sbjct: 302 KAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACS 361

Query: 269 QTGRIDDAGRLFHVIKEKDNV 289
             G ++    +F  +K    V
Sbjct: 362 HAGMVERGLEIFESMKRDHGV 382



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 144/338 (42%), Gaps = 48/338 (14%)

Query: 256 DEVTVSNILGACF--QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
           D    S ++  C    T  +  A R+   I+  +   +  +I G + +   E++   + +
Sbjct: 48  DVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIK 107

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
            L   + PD  +   +V +CA+L +   G   HG+A+  G + D  V ++L+ MY   G 
Sbjct: 108 ALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGD 167

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A +VF  M   +VVSW  MI GY + G    A  L+D++ + NL     T+ +++S 
Sbjct: 168 INAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNL----VTWSTMISG 223

Query: 434 CLHADLFERGQNHFDSISA---------VHGITPSLDHYACM------------------ 466
               + FE+    F+++ A         + G+  S  H   +                  
Sbjct: 224 YARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLN 283

Query: 467 -------INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
                  +++  R  +V+KAV + + LP K + L W+ L++  AM G   + E A  +  
Sbjct: 284 LILGTAVVDMYARCGNVEKAVMVFEQLPEK-DVLCWTALIAGLAMHG---YAEKALWYFS 339

Query: 520 ELEPINAGPY-IMLSNMYAAC---GRWEDVASIRSSMK 553
           E+      P  I  + +  AC   G  E    I  SMK
Sbjct: 340 EMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMK 377


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/600 (34%), Positives = 331/600 (55%), Gaps = 43/600 (7%)

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE-ALQVFSRMQKDRFEPTDYTH 159
           ++ G +     LF  +P  D+  YNT    F +   +   +L  +S M +    P  +T 
Sbjct: 47  SKHGDINYALKLFTTLPNPDTFLYNTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTF 106

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
            S + AC         KQ+H  ++    GG+ +  N L  +Y   G +D AR +F  M++
Sbjct: 107 PSLIRACKLE---EEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSD 163

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279
            N+VSW  ++SGY                                    Q G +D+A R+
Sbjct: 164 PNVVSWTSLVSGYS-----------------------------------QWGLVDEAFRV 188

Query: 280 FHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLA 337
           F ++  +K++V W  MI  + +  +  +A  LF  M + + +  D+F  ++++S+C  + 
Sbjct: 189 FELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVG 248

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L  G  +H      G+  D  +++ +IDMYCKCG  D A+ VF  +  + V SWN MI 
Sbjct: 249 ALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIG 308

Query: 398 GYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           G+A +G+  +A+ L+ ++ +E +  PDS TFV+VL+AC H+ L E G  +F  +  VHGI
Sbjct: 309 GFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGI 368

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P+ +HY CM++LL R+  +++A  +I  +P  P++ +   LL  C + G+++ GE    
Sbjct: 369 DPTKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGN 428

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            + EL+P N+G Y++L NMYA+CG+WE VA +R  M  + VKK   +S IE++  V++FV
Sbjct: 429 RVIELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFV 488

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           +  R HP  E IY ++ ++++ ++  GF P+T  VLHD  EEE+   + YHSEKLA+AY 
Sbjct: 489 AGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYG 548

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           L+K   G T +R+ KN+RVC DCH   K  S +    II+RD +RFHHF  G CSCKD W
Sbjct: 549 LLKTKRGET-LRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/438 (26%), Positives = 207/438 (47%), Gaps = 26/438 (5%)

Query: 40  ELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSA 99
           E AK+L +H+ L F     T+  N L+H Y   G L  AR +F  M   +++SW +L+S 
Sbjct: 117 EEAKQLHAHV-LKFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSG 175

Query: 100 HARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDY 157
           +++ G V +   +F+ MP  ++SVS+N  IA F      REA  +F RM+ + + E   +
Sbjct: 176 YSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRF 235

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
              + L+AC  +  L +G  IH  +    +  +  +   + DMY K G +DKA  +F  +
Sbjct: 236 VAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGL 295

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGACFQTGRIDDA 276
             + + SWN MI G+  +G+ +  I LF+EM+   +  PD +T  N+L AC  +G +++ 
Sbjct: 296 KVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEG 355

Query: 277 GRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
              F  + +   +      +  M+    + G+ E+A  + +EM    + PD   + +++ 
Sbjct: 356 WYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVIDEM---PMSPDAAVLGALLG 412

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-- 389
           +C    +L  G+ V  + + L  ++       L +MY  CG  +    V  +M  R V  
Sbjct: 413 ACRIHGNLELGEEVGNRVIELDPENSGRY-VILGNMYASCGKWEQVAGVRKLMDDRGVKK 471

Query: 390 ------VSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
                 +    ++N +   G+D   A A+Y K+ +         FV      LH  + E 
Sbjct: 472 EPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEE 531

Query: 443 GQN----HFDSISAVHGI 456
            +N    H + ++  +G+
Sbjct: 532 RENPLFYHSEKLAIAYGL 549


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 317/571 (55%), Gaps = 38/571 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           LNAC     LR G+++H  ++        ++R  L   Y K   ++ AR + D M  +N+
Sbjct: 58  LNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
           VSW  MIS Y + G   + + +F EM      P+E T + +L +C               
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGL 177

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G+I++A  +F  + E+D V  T +I GY Q G +E+A
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L +F  + SE +RP+  + +S++++ + LA L HG+  H   +   +    ++ ++LIDM
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 297

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFT 426
           Y KCG    A  +F+ MP R  +SWN+M+ GY+++G   E L L+  +  E  +KPD+ T
Sbjct: 298 YSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 357

Query: 427 FVSVLSACLHADLFERGQNHFDS-ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
            ++VLS C H  + + G + +D  ++  +GI P  +HY C++++LGR+  +D+A + IK 
Sbjct: 358 LLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKR 417

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP + +  +LL  C +   +  GE     L E+EP NAG Y++LSN+YA+ GRWEDV
Sbjct: 418 MPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDV 477

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
            ++R+ M  K V K    SWI+ +  +H F + DRTHP  E +  ++ ++  K+++AG+ 
Sbjct: 478 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 537

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VL+D  EE+K K +  HSEKLAL + LI    G+ PIR+ KN+R+C DCH F K 
Sbjct: 538 PDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGI-PIRVFKNLRICVDCHNFAKI 596

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S +  R + LRD NRFH  V G CSC D W
Sbjct: 597 FSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/424 (27%), Positives = 198/424 (46%), Gaps = 78/424 (18%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L++A+  +   G       Y  L+  C     +   +R+ +HM    Y P  T+L  RL
Sbjct: 34  RLQEALLEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLP-ATYLRTRL 92

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L FY K   L                               +D R + D+MP ++ VS+ 
Sbjct: 93  LIFYGKCDCL-------------------------------EDARKVLDEMPEKNVVSWT 121

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I+ ++  G S EAL VF+ M +   +P ++T  + L +C +   L  GKQIHG IV  
Sbjct: 122 AMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   ++FV ++L DMYAK G+I++AR +F+ +  R++VS   +I+GY + G  ++ +++F
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241

Query: 246 QEMQLLGLNPDEVTVSNILGA--------------CF---------------------QT 270
           Q +Q  G+ P+ VT +++L A              C                      + 
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSV 329
           G +  A RLF  + E+  + W  M+VGY+++G   + L LF  M  E  V+PD  ++ +V
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 330 VSSCA--KLA----SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +S C+  K+     S+Y G V    A   G+  D      ++DM  + G  D+A+     
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMV----AGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKR 417

Query: 384 MPTR 387
           MP++
Sbjct: 418 MPSK 421



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 136/306 (44%), Gaps = 56/306 (18%)

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+ ++AL+   EM+            +++++C    +L  GQ VH   +         +
Sbjct: 32  NGRLQEALL---EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYL 88

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            + L+  Y KC   +DA  V + MP +NVVSW +MI+ Y+Q G   EAL+++ ++++ + 
Sbjct: 89  RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDG 148

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH------YACMINLLGRSS 474
           KP+ FTF +VL++C+ A     G+        +HG+    ++       + ++++  ++ 
Sbjct: 149 KPNEFTFATVLTSCIRASGLALGKQ-------IHGLIVKWNYDSHIFVGSSLLDMYAKAG 201

Query: 475 DVDKAVDLIKSLPH----------------------------------KPNSLIWSTLLS 500
            +++A ++ + LP                                   +PN + +++LL+
Sbjct: 202 QIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLT 261

Query: 501 VCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             +    + HG+ A  H+   E P  A     L +MY+ CG       +  +M  +    
Sbjct: 262 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERT--- 318

Query: 560 FAAYSW 565
             A SW
Sbjct: 319 --AISW 322


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 324/583 (55%), Gaps = 40/583 (6%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREAL-QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           MP RD +++ + +        S + L    S        P D+   + + ACA L  ++ 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           GKQ+H   +V     +  V+++L DMYAK   +D A+ +FD +  +N +SW  M+SGY K
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                              +GR ++A  LF  +  K+   WT +
Sbjct: 121 -----------------------------------SGRKEEALELFRRLPVKNLYSWTAL 145

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           I G+ Q+GK  +A  +F EM  E V   D   +SS+V +CA LA+   G+ VHG  + LG
Sbjct: 146 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 205

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D  + +S+ALIDMY KC     A  +F+ M  R+VVSW S+I G AQ+GQ  +ALALYD
Sbjct: 206 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 265

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           +++   +KP+  TFV ++ AC H     +G+  F S++  +GI PSL HY C+++LLGRS
Sbjct: 266 EMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 325

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIML 532
             +D+A +LI ++P  P+   W+ LLS C  +G  + G   A HL    +P +   YI+L
Sbjct: 326 GLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIADHLVSSFKPKDPSTYILL 385

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YA+   W  V+  R  +    V+K   YS +E+  +   F + + +H   E I+  L
Sbjct: 386 SNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVRKETEVFYAGETSHALKEDIFRLL 445

Query: 593 SKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
            KL ++++   G+ P+T  +LHD  E+EK K + +HSE+ A+AY L+K   G TPIRI+K
Sbjct: 446 KKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPG-TPIRIVK 504

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           N+RVCGDCH+ +K  S+I  R II+RD+ R+HHF GG CSC D
Sbjct: 505 NLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCND 547



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 174/316 (55%), Gaps = 10/316 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ LV  C  +  ++L K++  H  ++ Y  N   + + L+  YAK   L  A+ +FD +
Sbjct: 45  FSALVKACANLGSIKLGKQVHCHFIVSEYS-NDDVVKSSLVDMYAKCRLLDCAKAVFDSI 103

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
            +++ ISW A++S +A+SG  ++   LF ++P+++  S+   I+GF   G   EA  VF+
Sbjct: 104 RVKNTISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFT 163

Query: 146 RMQKDRFEPTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M+++R +  D   +S++  ACA L     G+Q+HG ++       VF+ NAL DMYAK 
Sbjct: 164 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 223

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++  A+ +F RM +R++VSW  +I G  ++GQ +K + L+ EM   G+ P+EVT   ++
Sbjct: 224 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLI 283

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G +     LF  + +   +      +T ++    ++G  ++A  L + M     
Sbjct: 284 YACSHVGFVAKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PF 340

Query: 320 RPDKFSISSVVSSCAK 335
            PD+ + ++++S+C +
Sbjct: 341 PPDEPTWAALLSACKR 356


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 308/529 (58%), Gaps = 38/529 (7%)

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G++  AR +FD M+   +  WN +  GY++N  P + + L+++M+ LG+ PDE T   ++
Sbjct: 57  GDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVV 116

Query: 265 GACFQTG-----------------------------------RIDDAGRLFHVIKEKDNV 289
            A  Q G                                    +  A  LF  ++ KD V
Sbjct: 117 KAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLV 176

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W   +    Q G    AL  FN+M ++ V+ D F++ S++S+C +L SL  G+ ++ +A
Sbjct: 177 AWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRA 236

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
               +D +++V +A +DM+ KCG T+ A  +F  M  RNVVSW++MI GYA NG   EAL
Sbjct: 237 RKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREAL 296

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI--SAVHGITPSLDHYACMI 467
            L+  +  E L+P+  TF+ VLSAC HA L   G+ +F  +  S    + P  +HYACM+
Sbjct: 297 TLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMV 356

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LLGRS  +++A + IK +P +P++ IW  LL  CA+  D+  G+  A  L E  P    
Sbjct: 357 DLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPDIGS 416

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            +++LSN+YAA G+W+ V  +RS M+    KK AAYS +E + K+H F   D++HP+++ 
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKA 476

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IYE+L +++KK+++ G+ P+T  V HD + EEK  S+ +HSEKLA+A+ LIK   G  PI
Sbjct: 477 IYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPG-HPI 535

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           R+MKN+R C DCH F KF S +    II+RD NRFHHF  G CSCK+ W
Sbjct: 536 RVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 163/352 (46%), Gaps = 63/352 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
             L+  Y K G+L  A  LF+ M ++D+++WNA L+   ++G                  
Sbjct: 148 TELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTG------------------ 189

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
             N+AI           AL+ F++M  D  +   +T VS L+AC QL  L  G++I+ + 
Sbjct: 190 --NSAI-----------ALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRA 236

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
               +  N+ V NA  DM+ K G  + AR LF+ M  RN+VSW+ MI GY  NG  ++ +
Sbjct: 237 RKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREAL 296

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-------WTTMI 295
            LF  MQ  GL P+ VT   +L AC   G +++  R F ++ + ++         +  M+
Sbjct: 297 TLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMV 356

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
               ++G  E+A     +M    V PD     +++ +CA      H  ++ G+ V     
Sbjct: 357 DLLGRSGLLEEAYEFIKKM---PVEPDTGIWGALLGACA-----VHRDMILGQKVA---- 404

Query: 356 DDLLVSSA---------LIDMYCKCG---VTDDAWTVFNMMPTRNVVSWNSM 395
            D+LV +A         L ++Y   G     D   +    + T+ V +++S+
Sbjct: 405 -DVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSV 455



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 166/367 (45%), Gaps = 51/367 (13%)

Query: 110 RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169
           R +FD+M       +NT   G+       E+L ++ +M+     P ++T+   + A +QL
Sbjct: 63  RQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQL 122

Query: 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI 229
            D   G  +H  +V    G    V   L  MY K GE+  A +LF+ M  ++LV+WN  +
Sbjct: 123 GDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFL 182

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID--------------- 274
           +  ++ G     ++ F +M    +  D  TV ++L AC Q G ++               
Sbjct: 183 AVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEID 242

Query: 275 -------------------DAGR-LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
                              +A R LF  +K+++ V W+TMIVGY  NG   +AL LF  M
Sbjct: 243 CNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTM 302

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK---AVVLGVDDDLLVS-----SALID 366
            +E +RP+  +   V+S+C+     + G V  GK   ++++  +D  L       + ++D
Sbjct: 303 QNEGLRPNYVTFLGVLSACS-----HAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVD 357

Query: 367 MYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           +  + G+ ++A+     MP   +   W +++   A +   +    + D L++    PD  
Sbjct: 358 LLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVET--APDIG 415

Query: 426 TFVSVLS 432
           ++  +LS
Sbjct: 416 SYHVLLS 422



 Score = 96.3 bits (238), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 135/282 (47%), Gaps = 4/282 (1%)

Query: 228 MISGYLK--NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285
           M+S  L+  + +PK+   +   +   G +     ++ +L      G +  A ++F  + +
Sbjct: 12  MLSELLRASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHK 71

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
                W T+  GY +N    ++L+L+ +M    VRPD+F+   VV + ++L     G  +
Sbjct: 72  PRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFAL 131

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
           H   V  G     +V++ L+ MY K G    A  +F  M  +++V+WN+ +    Q G  
Sbjct: 132 HAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNS 191

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             AL  ++K+  + ++ DSFT VS+LSAC      E G+  +D  +    I  ++     
Sbjct: 192 AIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR-ARKEEIDCNIIVENA 250

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
            +++  +  + + A  L + +  + N + WST++   AM GD
Sbjct: 251 RLDMHLKCGNTEAARVLFEEMKQR-NVVSWSTMIVGYAMNGD 291


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/644 (33%), Positives = 344/644 (53%), Gaps = 39/644 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + N+L++ +A+ G V+D   +FD MP+RD V++N  + G+ + G    AL  F  M 
Sbjct: 141 DVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMH 200

Query: 149 KD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +      ++AL AC       +GK+IHG ++   L  ++ V  +L DMY K GE+
Sbjct: 201 DALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEV 260

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             AR +F  M  R +V+WN MI GY  N +P +  D F +M+  GL  + VT  N+L AC
Sbjct: 261 AYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAAC 320

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
            QT                                   G+++ + ++F  I  K  V W 
Sbjct: 321 AQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWN 380

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y       +A+ LF E+L++ + PD F++S+VV +   L SL H + +H   + L
Sbjct: 381 NMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGL 440

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  ++ L+ +A++ MY + G    +  +F+ M +++V+SWN+MI GYA +GQ   AL ++
Sbjct: 441 GYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMF 500

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           D++    L+P+  TFVSVL+AC  + L + G  HF+ +   +G+ P ++HY CM +LLGR
Sbjct: 501 DEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGR 560

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
             D+ + +  I+S+P  P S +W +LL+    + DI   E AA  +F+LE  N G YI+L
Sbjct: 561 EGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVL 620

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           S+MYA  GRWEDV  +R  MK K +++    S +E+ +    F + D +H ++  I+E  
Sbjct: 621 SSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVS 680

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L +K++E   + N    +        + +   HS +LA+ + LI    G +PI + KN
Sbjct: 681 DILSRKIKETDDTRNQSYPVPVATRTTTMPN--KHSVRLAVVFGLISSEIG-SPILVKKN 737

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C  CH  +K  S   GR I++ DS  +H F  G+C C D W
Sbjct: 738 VRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/427 (26%), Positives = 197/427 (46%), Gaps = 40/427 (9%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           D+  +N  I GFA+ G    AL  +  M +D   P  +T    +  CA+L  L  G+  H
Sbjct: 71  DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAH 130

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G ++   L  +V+  N+L   YAK G ++ A  +FD M  R++V+WN+M+ GY+ NG   
Sbjct: 131 GMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGS 190

Query: 240 KCIDLFQEMQ-LLGLNPDEVTVSNILGAC------------------------------- 267
             +  FQEM   L +  D V +   L AC                               
Sbjct: 191 LALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSL 250

Query: 268 ----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                + G +  A  +F  +  +  V W  MI GY  N + ++A   F +M +E ++ + 
Sbjct: 251 LDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEV 310

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            +  +++++CA+  S  +G+ VHG  V       +++ +AL++MY K G  + +  +F  
Sbjct: 311 VTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGK 370

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA-CLHADLFER 442
           +  + +VSWN+MI  Y       EA+ L+ +LL + L PD FT  +V+ A  L   L   
Sbjct: 371 IANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHC 430

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
            Q H   I    G   +      ++++  RS DV  + ++   +  K + + W+T++   
Sbjct: 431 RQIHSYIIGL--GYAENTLIMNAVLHMYARSGDVVASREIFDKMVSK-DVISWNTMIMGY 487

Query: 503 AMKGDIK 509
           A+ G  K
Sbjct: 488 AIHGQGK 494



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 118/481 (24%), Positives = 198/481 (41%), Gaps = 96/481 (19%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +DI    +LL  + + G V   R++F  MP+R  V++N  I G+A      EA   F +M
Sbjct: 242 QDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQM 301

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +  +    T ++ L ACAQ      G+ +HG +V      +V +  AL +MY K G++
Sbjct: 302 RAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKV 361

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA- 266
           + +  +F ++ N+ LVSWN MI+ Y+      + I LF E+    L PD  T+S ++ A 
Sbjct: 362 ESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAF 421

Query: 267 --------CFQ--------------------------TGRIDDAGRLFHVIKEKDNVCWT 292
                   C Q                          +G +  +  +F  +  KD + W 
Sbjct: 422 VLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWN 481

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           TMI+GY  +G+ + AL +F+EM    ++P++ +  SV+++C+                  
Sbjct: 482 TMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS------------------ 523

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-----NVVSWNSMINGYAQNGQDLE 407
                  VS          G+ D+ W  FN+M         +  +  M +   + G   E
Sbjct: 524 -------VS----------GLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLRE 566

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH--YAC 465
            L   + +    + P S  + S+L+A        R QN  D           L+H    C
Sbjct: 567 VLQFIESM---PIDPTSRVWGSLLTA-------SRNQNDIDIAEYAAERIFQLEHDNTGC 616

Query: 466 MINL------LGRSSDVDKAVDLIKSLPHK---PNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            I L       GR  DV++   L+K    +   P SL+     +     GD+ H +    
Sbjct: 617 YIVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTI 676

Query: 517 H 517
           H
Sbjct: 677 H 677



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/219 (30%), Positives = 115/219 (52%), Gaps = 4/219 (1%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y +S   +  R  F    L  ++   ALL  + + G V+    +F K+  +  VS+N  
Sbjct: 327 LYGRSVHGYVVRRQF----LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNM 382

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           IA +  K    EA+ +F  +      P  +T  + + A   L  LR  +QIH  I+    
Sbjct: 383 IAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGY 442

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
             N  + NA+  MYA+ G++  +R +FD+M +++++SWN MI GY  +GQ K  +++F E
Sbjct: 443 AENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDE 502

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           M+  GL P+E T  ++L AC  +G +D+    F+++ ++
Sbjct: 503 MKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQE 541



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 22/340 (6%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L P   +  +++ +    GR+D+A      ++  D      MI G+   G    AL  + 
Sbjct: 37  LPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYR 96

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372
            ML +  RPD+F+   VV  CA+L  L  G+  HG  + LG++ D+   ++L+  Y K G
Sbjct: 97  GMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLG 156

Query: 373 VTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVL 431
           + +DA  VF+ MP R++V+WN M++GY  NG    ALA + ++     ++ DS   ++ L
Sbjct: 157 LVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAAL 216

Query: 432 SA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +A CL     +  + H   I   HG+   +     ++++  +  +V  A  +  ++P + 
Sbjct: 217 AACCLEFSSMQGKEIHGYVIR--HGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR- 273

Query: 491 NSLIWSTLLSVCAMKGDIKHG-----EMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
             + W+ ++   A+            +M A  L ++E + A       N+ AAC + E  
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGL-QVEVVTA------INLLAACAQTESS 326

Query: 546 ASIRSSMKSKNVKKFAAY-----SWIEIDNKVHKFVSEDR 580
              RS       ++F  +     + +E+  KV K  S ++
Sbjct: 327 LYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEK 366



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 31/109 (28%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N +LH YA+SG +  +R++FDKM  +D+ISWN +                      
Sbjct: 446 TLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTM---------------------- 483

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
                    I G+A  G  + AL++F  M+ +  +P + T VS L AC+
Sbjct: 484 ---------IMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS 523


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/554 (35%), Positives = 325/554 (58%), Gaps = 36/554 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L  CA+   +   K  HGKI+  +L G+V + N L + Y+K G ++ AR +FD M  R+L
Sbjct: 60  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 119

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------- 267
           VSWN MI  Y +N    + +D+F EM+  G    E T+S++L AC               
Sbjct: 120 VSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCL 179

Query: 268 --------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G I DA ++F  +++K +V W++M+ GY QN   E+A
Sbjct: 180 SVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 239

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L+L+       +  ++F++SSV+ +C+ LA+L  G+ +H      G   ++ V+S+ +DM
Sbjct: 240 LLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDM 299

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427
           Y KCG   +++ +F+ +  +N+  WN++I+G+A++ +  E + L++K+ Q+ + P+  TF
Sbjct: 300 YAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTF 359

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            S+LS C H  L E G+  F  +   +G++P++ HY+CM+++LGR+  + +A +LIKS+P
Sbjct: 360 SSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIP 419

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
             P + IW +LL+ C +  +++  E+AA  LFELEP NAG +++LSN+YAA  +WE++A 
Sbjct: 420 FDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAK 479

Query: 548 IRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607
            R  ++  +VKK    SWI+I +KVH F   +  HP    I   L  L+ K ++ G+ P+
Sbjct: 480 SRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPS 539

Query: 608 TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFAS 667
            +  LHD +  +K + +  HSEKLAL + L+  P   +P+RIMKN+R+C DCH FMK AS
Sbjct: 540 VEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPES-SPVRIMKNLRICVDCHEFMKAAS 598

Query: 668 DIIGRTIILRDSNR 681
               R II+RD NR
Sbjct: 599 MATRRFIIVRDVNR 612



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 114/190 (60%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           ALL  +A+ G ++D   +F+ M  + SV++++ +AG+       EAL ++ R Q+   E 
Sbjct: 194 ALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQ 253

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +T  S + AC+ L  L  GKQ+H  I     G NVFV ++  DMYAK G + ++  +F
Sbjct: 254 NQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIF 313

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
             +  +NL  WN +ISG+ K+ +PK+ + LF++MQ  G++P+EVT S++L  C  TG ++
Sbjct: 314 SEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVE 373

Query: 275 DAGRLFHVIK 284
           +  R F +++
Sbjct: 374 EGRRFFKLMR 383



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 188/382 (49%), Gaps = 44/382 (11%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR-----DIISWNALLSAHARSGSVQDLRA 111
           N   +H  +L   A++G +  A+    K+ +R     D+   N L++A+++ G V+  R 
Sbjct: 52  NRNLVH-EILQLCARNGAVMEAKACHGKI-IRIDLEGDVTLLNVLINAYSKCGFVELARQ 109

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +FD M  R  VS+NT I  +       EAL +F  M+ + F+ +++T  S L+AC    D
Sbjct: 110 VFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCD 169

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
               K++H   V   +  N++V  AL D+YAK G I  A  +F+ M +++ V+W+ M++G
Sbjct: 170 ALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAG 229

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------------------ 267
           Y++N   ++ + L++  Q + L  ++ T+S+++ AC                        
Sbjct: 230 YVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSN 289

Query: 268 -----------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                       + G + ++  +F  ++EK+   W T+I G+ ++ + ++ +ILF +M  
Sbjct: 290 VFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQ 349

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
           + + P++ + SS++S C     +  G +         G+  +++  S ++D+  + G+  
Sbjct: 350 DGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLS 409

Query: 376 DAWTVFNMMPTRNVVS-WNSMI 396
           +A+ +   +P     S W S++
Sbjct: 410 EAYELIKSIPFDPTASIWGSLL 431



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 174/353 (49%), Gaps = 48/353 (13%)

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNG---QPKKCIDLFQEMQLLGLNPDEVTVSN 262
           E+   R+  +  +NRNLV   L +    +NG   + K C      + L G    +VT+ N
Sbjct: 40  EVSPGRY-SNEFSNRNLVHEILQLCA--RNGAVMEAKACHGKIIRIDLEG----DVTLLN 92

Query: 263 IL-GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           +L  A  + G ++ A ++F  + E+  V W TMI  YT+N  E +AL +F EM +E  + 
Sbjct: 93  VLINAYSKCGFVELARQVFDGMLERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKF 152

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
            +F+ISSV+S+C         + +H  +V   +D +L V +AL+D+Y KCG+  DA  VF
Sbjct: 153 SEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVF 212

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
             M  ++ V+W+SM+ GY QN    EAL LY +  + +L+ + FT  SV+ AC       
Sbjct: 213 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALI 272

Query: 435 ----LHADLFER--GQNHFDSISAVHGIT-----------------PSLDHYACMINLLG 471
               +HA + +   G N F + SAV                      +L+ +  +I+   
Sbjct: 273 EGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFA 332

Query: 472 RSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           + +   + + L + +      PN + +S+LLSVC   G ++ G    R  F+L
Sbjct: 333 KHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEG----RRFFKL 381



 Score = 39.7 bits (91), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           N    RN+V  + ++   A+NG  +EA A + K+++ +L+ D      +++A       E
Sbjct: 48  NEFSNRNLV--HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVE 105

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL---IKSLPHKPNSLIWSTL 498
             +  FD +     +  SL  +  MI L  R+    +A+D+   +++   K +    S++
Sbjct: 106 LARQVFDGM-----LERSLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSV 160

Query: 499 LSVCAMKGDIKHGEMAARHLFELEP-INAGPYI--MLSNMYAACGRWEDVASIRSSMKSK 555
           LS C +  D    E    H   ++  I+   Y+   L ++YA CG  +D   +  SM+ K
Sbjct: 161 LSACGVNCDAL--ECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDK 218

Query: 556 N 556
           +
Sbjct: 219 S 219


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/682 (35%), Positives = 362/682 (53%), Gaps = 55/682 (8%)

Query: 44  RLQSHMDLNFYEPN---TTFLH-----NRLLHFYAKSGKLFYARDLFDKMPLRDIIS--- 92
           +L  H +L+F++ +   T FLH     N LL+    S    +A  +  ++    ++S   
Sbjct: 7   KLPLHPNLSFFKSHYHQTPFLHPLTSLNSLLNCSRTSK---HATQIHSQLITTALLSLPF 63

Query: 93  -WNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
            +N LL+ +A+ GSV     LF   P   ++ VS+ + I          +AL  F+ M++
Sbjct: 64  LFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRR 123

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
               P  YT  + L+AC        G+Q+H  +        VFV +AL DMYAK  ++  
Sbjct: 124 SGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLM 183

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACF 268
           A  +F+ M  RNLVSWN MI G+L+N    + I  F+ + L  L   DEV+ S++  AC 
Sbjct: 184 AEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACA 243

Query: 269 QTGRID-----------------------------------DAGRLFHVIKEKDNVCWTT 293
             G ++                                   D  +LF     +D V W  
Sbjct: 244 NAGNLEFGKQVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNI 303

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI+ Y  N   EDA   F  M  +   PD+ S SSV+ SCA LA+LY G ++H + +  G
Sbjct: 304 MIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSG 363

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              +L V+S+LI MY KCG   DA+ +F     RNVV W ++I    Q+G     + L++
Sbjct: 364 FVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFE 423

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++L+E +KPD  TFVSVLSAC H    E G  +F+S+  VHGI P  +HYAC+++LL R+
Sbjct: 424 QMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRA 483

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            ++D+A   I+ +P KP++ +W  LLS C    ++  G+  A  LF+LEP N G Y++L 
Sbjct: 484 GELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLC 543

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+    G   +   +R  M+S  V+K    SWI+I N  + F   D++H +T+ IYE L 
Sbjct: 544 NILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLE 603

Query: 594 KLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNI 653
           KL + +++ G+   T+  + +T EE K +S+ YHSEK+ALA+ L+  P G  PIRI KN+
Sbjct: 604 KLKELVKKKGYVAETEFAI-NTAEEYKEQSLWYHSEKIALAFGLLSLPAG-APIRIKKNL 661

Query: 654 RVCGDCHLFMKFASDIIGRTII 675
           R CGDCH  MKFAS+I  R II
Sbjct: 662 RTCGDCHTVMKFASEIFAREII 683



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 149/341 (43%), Gaps = 43/341 (12%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           A  E +++ +   C    ++E  K++   + L     N  +++N L   Y K G      
Sbjct: 229 ALDEVSFSSVFSACANAGNLEFGKQVHG-VALKLGVWNLVYINNSLSDMYGKCGLFNDVA 287

Query: 80  DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE 139
            LF     RD+++WN ++ A+  + + +D                               
Sbjct: 288 KLFSNTGARDVVTWNIMIMAYVYNHNYED------------------------------- 316

Query: 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
           A   F  M++    P + ++ S L++CA L  L +G  IH +I+      N+ V ++L  
Sbjct: 317 ACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLIT 376

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           MYAK G +  A  +F+   +RN+V W  +I+   ++G     ++LF++M   G+ PD +T
Sbjct: 377 MYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYIT 436

Query: 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEML 315
             ++L AC  TGR+++    F+ + +   +         IV       E D    F E++
Sbjct: 437 FVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELM 496

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
              ++PD     +++S+C       H  ++ GK V L + D
Sbjct: 497 P--IKPDASVWGALLSACRN-----HSNLIMGKEVALKLFD 530


>gi|449458777|ref|XP_004147123.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Cucumis sativus]
 gi|449503335|ref|XP_004161951.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Cucumis sativus]
          Length = 629

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 232/636 (36%), Positives = 340/636 (53%), Gaps = 62/636 (9%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R+ VS+   I GF+  G   E   +FSRM  D   P ++T  S L +  +  D  RG
Sbjct: 1   MPRRNYVSWTVLITGFSQYGHVDECFLIFSRMLVDH-RPNEFTVSSLLTSFGEH-DGERG 58

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAK---------GGEIDKARWLFDRMNNRNLVSWN 226
           +QIHG  +  +L   V+V NAL  MY+K           + D A  +F  M N +L++WN
Sbjct: 59  RQIHGFALKISLDAFVYVANALITMYSKICSEDGAFKDSKDDDAWTMFKSMENPSLITWN 118

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---------------CFQT- 270
            MI+G+       + I LF +M   G+  D  T+ + L +               C Q  
Sbjct: 119 SMIAGFCFRKLGHQAIYLFMQMNRHGIGFDRATLVSTLSSTSFCNRDEFGRRLSFCHQIH 178

Query: 271 --------------------------GRIDDAGRLF-HVIKEKDNVCWTTMIVGYTQNGK 303
                                     G I D+ RLF      +D V WT+++  +  +  
Sbjct: 179 CQALKTAFISEVEIITALVKTYAELGGDIADSYRLFVEAGYNRDIVLWTSIMAAFIDHDP 238

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            +  L LF +   E + PD  + S V+ +CA   +  H    H   +    +D  ++++A
Sbjct: 239 GK-TLSLFCQFRQEGLTPDGHTFSIVLKACAGFLTEKHASTYHSLLIKSMSEDHTVLNNA 297

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI  Y +CG    +  VFN M   ++VSWN+M+  YA +GQ   AL L+ K+   N+ PD
Sbjct: 298 LIHAYGRCGSISSSKKVFNQMKHHDLVSWNTMMKAYALHGQAEIALQLFTKM---NVPPD 354

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           + TFVS+LSAC HA L E G + F+SI+  +GI   LDHYACM+++LGRS  V +A D I
Sbjct: 355 ATTFVSLLSACSHAGLVEEGTSLFNSITN-YGIVCRLDHYACMVDILGRSGQVQEAHDFI 413

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            ++P +P+ ++WS+ L  C   G     ++A+  L EL+P N+  Y+ +SN+Y   G + 
Sbjct: 414 SNMPIEPDFVVWSSFLGSCRKYGATGLAKLASYKLKELDPSNSLAYVQMSNLYCFNGSFY 473

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           +   IR  M    VKK    S +EI+N+VH+F S  R HP+ E+I  EL KLI +L+E G
Sbjct: 474 EADLIRMEMTGSRVKKEPGLSRVEIENQVHEFASGGRCHPQREVICNELEKLIGRLKEIG 533

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKK---PHGVTPIRIMKNIRVCGDCH 660
           + P T L LHD ++E+K + + +HSEKLAL + ++          PIRIMKNIR+C DCH
Sbjct: 534 YVPETSLALHDVEQEQKEQQLYHHSEKLALVFSVMNDYNLGRVNNPIRIMKNIRICVDCH 593

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            FMK AS ++ + I++RDSNRFHHF+ G CSC D W
Sbjct: 594 NFMKLASRLLQKEIVIRDSNRFHHFMAGLCSCNDYW 629



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 13/251 (5%)

Query: 94  NALLSAHAR-SGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
            AL+  +A   G + D   LF +    RD V + + +A F +    +  L +F + +++ 
Sbjct: 194 TALVKTYAELGGDIADSYRLFVEAGYNRDIVLWTSIMAAFIDHDPGK-TLSLFCQFRQEG 252

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P  +T    L ACA  L  +     H  ++      +  + NAL   Y + G I  ++
Sbjct: 253 LTPDGHTFSIVLKACAGFLTEKHASTYHSLLIKSMSEDHTVLNNALIHAYGRCGSISSSK 312

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F++M + +LVSWN M+  Y  +GQ +  + LF +M    + PD  T  ++L AC   G
Sbjct: 313 KVFNQMKHHDLVSWNTMMKAYALHGQAEIALQLFTKMN---VPPDATTFVSLLSACSHAG 369

Query: 272 RIDDAGRLFHVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
            +++   LF+ I     VC    +  M+    ++G+ ++A    + M    + PD    S
Sbjct: 370 LVEEGTSLFNSITNYGIVCRLDHYACMVDILGRSGQVQEAHDFISNM---PIEPDFVVWS 426

Query: 328 SVVSSCAKLAS 338
           S + SC K  +
Sbjct: 427 SFLGSCRKYGA 437



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 9/122 (7%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L+N L+H Y + G +  ++ +F++M   D++SWN ++ A+A  G  +    LF KM +
Sbjct: 292 TVLNNALIHAYGRCGSISSSKKVFNQMKHHDLVSWNTMMKAYALHGQAEIALQLFTKMNV 351

Query: 119 -RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD-LRRGK 176
             D+ ++ + ++  ++ G   E   +F+ +       T+Y  V  L+  A ++D L R  
Sbjct: 352 PPDATTFVSLLSACSHAGLVEEGTSLFNSI-------TNYGIVCRLDHYACMVDILGRSG 404

Query: 177 QI 178
           Q+
Sbjct: 405 QV 406


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/618 (34%), Positives = 346/618 (55%), Gaps = 38/618 (6%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           MP R++VS+ T ++G +      +AL  F+ M++    PT +   SA  A A L     G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
            Q+H   V       +FV + L DMY+K G + +A  +FD+M  ++ V+W  MI GY KN
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 236 GQPKKCIDLFQEMQLLGL-NPDEVTVSNILGA--------------CFQTGR-------- 272
           G  +  +  F++M+  GL   D+    ++L A              C  T          
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 273 -------------IDDAGRLFHVIKEKDNVC-WTTMIVGYTQNGKEEDALILFNEMLSED 318
                        ++ A R+  +     NV   T+MI GY +    E+AL+++ E+  + 
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 319 VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
           V P++F+ SS++  CA  A L  G  +H + +   +  D  V S L+DMY KCG+   + 
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSM 300

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            +FN +  R  ++WN++IN +AQ+G   EA+  +D+++   ++P+   FVS+L+AC HA 
Sbjct: 301 QLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAG 360

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L + G  +F S+   HGI P  +HY+C+I+  GR+  +D+A   I  +P KPN+  W +L
Sbjct: 361 LVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSL 420

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C M+G  + GE+AA++L +LEP N G ++ LS +YA+ G+WEDV ++R  M+   +K
Sbjct: 421 LGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIK 480

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEE 618
           K   +SW++ + K H F SED +HP+ + IYE+L +L  +++E G+ P+T  +  + ++ 
Sbjct: 481 KLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDI 540

Query: 619 EKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRD 678
            K + + YHSE++A+A+ LI  P    PI + KN+R+C DCH   KF   +  R II+RD
Sbjct: 541 AKERILRYHSERIAVAFALISMP-ATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRD 599

Query: 679 SNRFHHFVGGNCSCKDNW 696
           ++RFHHFV G CSC D W
Sbjct: 600 NSRFHHFVNGRCSCGDYW 617



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 129/257 (50%), Gaps = 9/257 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           NAL+  +A+S  V+    +    P   + VS  + I G+       EAL ++  +++   
Sbjct: 182 NALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGV 241

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           EP ++T  S +  CA    L +G Q+H +++  +L  + FV + L DMY K G I  +  
Sbjct: 242 EPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQ 301

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           LF+ +  R  ++WN +I+ + ++G  ++ I  F  M   G+ P+ +   ++L AC   G 
Sbjct: 302 LFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGL 361

Query: 273 IDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           +D+  + F+ +KE   +      ++ +I  Y + G+ ++A    +EM    ++P+ +   
Sbjct: 362 VDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEM---PIKPNAYGWC 418

Query: 328 SVVSSCAKLASLYHGQV 344
           S++ +C    S   G+V
Sbjct: 419 SLLGACRMRGSKELGEV 435



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 164/383 (42%), Gaps = 70/383 (18%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L   Y+K G L  A  +FD+MP +D ++W A++  +A++GS++            
Sbjct: 77  FVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLE------------ 124

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLRRGKQI 178
                               A+  F  M+++     D +   S L+A   L D    K I
Sbjct: 125 -------------------AAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSI 165

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA-RWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           H  +        V VRNAL DMYAK  +++ A R L       N+VS   MI GY++   
Sbjct: 166 HCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDC 225

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------------------------- 268
            ++ + ++ E++  G+ P+E T S+++  C                              
Sbjct: 226 VEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST 285

Query: 269 ------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G I  + +LF+ I+ + ++ W  +I  + Q+G   +A+  F+ M+   +RP+
Sbjct: 286 LVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPN 345

Query: 323 KFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
             +  S++++C+    +  G +  +      G++      S +ID Y + G  D+A+   
Sbjct: 346 HIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFI 405

Query: 382 NMMPTR-NVVSWNSMINGYAQNG 403
           + MP + N   W S++      G
Sbjct: 406 SEMPIKPNAYGWCSLLGACRMRG 428



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 45/211 (21%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           L  +G    E  ++ ++  C     +E   +L + + +       +F+ + L+  Y K G
Sbjct: 236 LRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQV-IKTDLIRDSFVGSTLVDMYGKCG 294

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  +  LF+++  R  I+WNA+++                                FA 
Sbjct: 295 LISLSMQLFNEIEYRTDIAWNAVINV-------------------------------FAQ 323

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG-------KQIHGKIVVGN 186
            G  REA+Q F RM      P     VS L AC+    +  G       K+ HG      
Sbjct: 324 HGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHG------ 377

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           +       + + D Y + G +D+A      M
Sbjct: 378 IEPKEEHYSCIIDTYGRAGRLDEAYKFISEM 408


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/611 (36%), Positives = 337/611 (55%), Gaps = 66/611 (10%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR-F 152
           N L++ + + G+      +FD+MP RD +++ + +        S + L VFS +      
Sbjct: 110 NTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGL 169

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P D+   + + ACA L  +  G+Q+H   +V     +  V+++L DMYAK G ++ A+ 
Sbjct: 170 RPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKA 229

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +FD +  +N +SW  M+SGY K                                   +GR
Sbjct: 230 VFDSIRVKNTISWTAMVSGYAK-----------------------------------SGR 254

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVS 331
            ++A  LF ++  K+   WT +I G+ Q+GK  +A  +F EM  E V   D   +SS+V 
Sbjct: 255 KEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVG 314

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +CA LA+   G+ VHG              +ALIDMY KC     A  +F+ M  R+VVS
Sbjct: 315 ACANLAASIAGRQVHG--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVS 360

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           W S+I G AQ+GQ  +ALALYD ++   +KP+  TFV ++ AC H    E+G+  F S++
Sbjct: 361 WTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMT 420

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GI PSL HY C+++LLGRS  +D+A +LI ++P  P+   W+ LLS C  +G  + G
Sbjct: 421 KDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMG 480

Query: 512 EMAARHL---FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
              A HL   F+L+  +   YI+LSN+YA+   W  V+  R  +    V+K   +S +E+
Sbjct: 481 IRIADHLVSSFKLK--DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEV 538

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA-----GFSPNTKLVLHDTQEEEKVKS 623
             +   F + + +HP  E I+    +L+KKL+E      G+ P+T  +LHD  E+EK K 
Sbjct: 539 RKETEVFYAGETSHPLKEDIF----RLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 594

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           + +HSE+ A+AY L+K   G TPIRI+KN+RVCGDCH+ +K  S+I  R II+RD+ R+H
Sbjct: 595 LFWHSERSAVAYGLLKAVPG-TPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYH 653

Query: 684 HFVGGNCSCKD 694
           HF GG CSC D
Sbjct: 654 HFKGGKCSCND 664



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 169/316 (53%), Gaps = 24/316 (7%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           ++ LV  C  +  ++  +++  H  ++ Y  N   + + L+  YAK G L  A+ +FD +
Sbjct: 176 FSALVKACANLGSIDHGRQVHCHFIVSEY-ANDEVVKSSLVDMYAKCGLLNSAKAVFDSI 234

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
            +++ ISW A++S +A+SG  ++   LF  +P+++  S+   I+GF   G   EA  VF+
Sbjct: 235 RVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 294

Query: 146 RMQKDRFEPTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M+++R +  D   +S++  ACA L     G+Q+HG              NAL DMYAK 
Sbjct: 295 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHG--------------NALIDMYAKC 340

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++  A+ +F RM +R++VSW  +I G  ++GQ +K + L+ +M   G+ P+EVT   ++
Sbjct: 341 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 400

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G ++    LF  + +   +      +T ++    ++G  ++A  L + M     
Sbjct: 401 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PF 457

Query: 320 RPDKFSISSVVSSCAK 335
            PD+ + ++++S+C +
Sbjct: 458 PPDEPTWAALLSACKR 473



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 102/223 (45%), Gaps = 10/223 (4%)

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMIN 397
           +L   + +H   V LG+     +++ L+++Y KCG    A  VF+ MP R+ ++W S++ 
Sbjct: 86  TLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145

Query: 398 GYAQNGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHG 455
              Q     + L           L+PD F F +++ AC +    + G Q H   I + + 
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 205

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
               +   + ++++  +   ++ A  +  S+  K N++ W+ ++S  A  G     +  A
Sbjct: 206 NDEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSGYAKSGR----KEEA 258

Query: 516 RHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
             LF + P+ N   +  L + +   G+  +  S+ + M+ + V
Sbjct: 259 LELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERV 301


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/654 (35%), Positives = 349/654 (53%), Gaps = 82/654 (12%)

Query: 57  NTTFLHNRLLHFYA--KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFD 114
           N  F+ +RLL  Y+  K   L YAR +FD++  R +I W                     
Sbjct: 46  NHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHW--------------------- 84

Query: 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                     NT I  +    FS + + +F  +  + + P ++T    +  CA+L  ++ 
Sbjct: 85  ----------NTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQE 133

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-----------NLV 223
           GKQIHG  +    G +VFV+ +L +MY+K GEID AR +FD M ++           NLV
Sbjct: 134 GKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLV 193

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           SWN MI+GY+K+G     ++LF +M +                                 
Sbjct: 194 SWNAMINGYMKSGDFDSALELFYQMPIW-------------------------------- 221

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
              D V W  MI GY  NG+  DA+ +F  ML    RP   ++ SV+S+ + LA L  G+
Sbjct: 222 ---DLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGR 278

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403
            +H      G + D ++ ++LI+MY KCG  + A TVF  +  + V  W ++I G   +G
Sbjct: 279 WIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHG 338

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
               ALAL+ ++ +  LKP++  F+ VL+AC HA L + G+ +FD +   + I P+L+HY
Sbjct: 339 MANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 398

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
            C++++L R+  +++A + I+++P  PN +IW +LL      G I  GE AA+ + E+ P
Sbjct: 399 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP 458

Query: 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHP 583
              G YI+LSNMYAA G WE V+ +R  M  +  +K    S +E    +H+F+  D +HP
Sbjct: 459 ETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHP 518

Query: 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQ-EEEKVKSICYHSEKLALAYCLIKKPH 642
           +T+ IY ++S++ +KL+  G  P+T  VL   + E+EK   +  HSE+LA+A+ LI    
Sbjct: 519 QTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKP 578

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G+ PIRIMKN+RVC DCH   K  S I  R II+RD+ RFHHF  G+CSC D W
Sbjct: 579 GI-PIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 130/263 (49%), Gaps = 12/263 (4%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           ++  C R+  V+  K++   + L     +  F+   L++ Y+K G++  AR +FD M  +
Sbjct: 121 VIKGCARLGVVQEGKQIHG-LALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDK 179

Query: 89  DII-----------SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           D++           SWNA+++ + +SG       LF +MPI D V++N  IAG+   G  
Sbjct: 180 DVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQF 239

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +A+++F  M K    P+  T VS L+A + L  L +G+ IH  +       +  +  +L
Sbjct: 240 MDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSL 299

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MYAK G I+ A  +F  +  + +  W  +I G   +G     + LF EM   GL P+ 
Sbjct: 300 IEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNA 359

Query: 258 VTVSNILGACFQTGRIDDAGRLF 280
           +    +L AC   G +DD  + F
Sbjct: 360 IIFIGVLNACNHAGLVDDGRQYF 382


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/686 (33%), Positives = 347/686 (50%), Gaps = 100/686 (14%)

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           AR +FD++  R+  SW+ L+  + ++   Q                              
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQ------------------------------ 30

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            EAL+V+  M ++      YT  S L AC +LLD+  G+ +  K        +V V  +L
Sbjct: 31  -EALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSL 89

Query: 198 TDMYAKGGEIDKA------------------------------RWLFDRMNNRNLVSWNL 227
             ++AK G +++A                              + LF  M+ +++VSWN 
Sbjct: 90  IHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGSLKDSKSLFLTMDVKDVVSWNA 149

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV----- 282
           MI+ Y   G  K    LF  M  LG  PD  T S+ILGAC    R++D GR+ HV     
Sbjct: 150 MIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLED-GRMLHVRITAR 208

Query: 283 -------------------------------IKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                                          I++K+   W TM+  Y Q  K +DAL L+
Sbjct: 209 GFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLY 268

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML E   PD+F+ SSVV SCA L +L  G+ +H  +   G + D+++ +AL++MY KC
Sbjct: 269 KNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKC 328

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G   DA   F+ +  ++VVSW++MI   AQ+G   EAL L   +  + +  +  T  SVL
Sbjct: 329 GSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVL 388

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            AC H      G ++F  +S   GI    ++    I+LLGR+  + +A  ++ ++P K +
Sbjct: 389 HACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVS 448

Query: 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
            +   TLL  C + GD++ G+   + +  LEP N G Y++L+NMYAA GRW+DVA +R  
Sbjct: 449 FVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRY 508

Query: 552 MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL-QEAGFSPNTKL 610
           M+ K VK+    S IE  +K+++F   D ++P    I  EL +L  ++ +E G+ P+T+ 
Sbjct: 509 MRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRD 568

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
           V HD  +++K + + +HSEK+A+ + LI  P G T +RI+KN+RVC DCH   K AS I 
Sbjct: 569 VFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGST-LRIIKNLRVCSDCHTVGKLASKIT 627

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR II+RD  RFHHF GG CSC D W
Sbjct: 628 GRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 121/451 (26%), Positives = 210/451 (46%), Gaps = 44/451 (9%)

Query: 24  EAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           +AYT   ++  CT++ DVE  + +Q   +   +E +   +   L+H +AK G L  A  +
Sbjct: 47  DAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVV-VATSLIHLFAKCGCLEEAESV 105

Query: 82  FDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           F  M  +RDIIS  A++ A+   GS++D ++LF  M ++D VS+N  IA +   G  ++A
Sbjct: 106 FRSMGAMRDIISVTAMIGAYC--GSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDA 163

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
             +F RM      P  YT  S L ACA    L  G+ +H +I       +  ++N L  M
Sbjct: 164 FSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISM 223

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y + G ++ AR  F  +  + L +WN M++ Y +  + K  + L++ M L G  PD  T 
Sbjct: 224 YTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTF 283

Query: 261 SNILGAC-----------------------------------FQTGRIDDAGRLFHVIKE 285
           S+++ +C                                    + G + DA + F  I  
Sbjct: 284 SSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISN 343

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QV 344
           KD V W+ MI    Q+G  E+AL L + M  + +  ++ + SSV+ +C+    LY G   
Sbjct: 344 KDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDY 403

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNG 403
             G +   G++ D   +   ID+  + G   +A  V + MP + + V+  +++ G   +G
Sbjct: 404 FMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHG 463

Query: 404 QDLEALALYDKLLQ-ENLKPDSFTFVSVLSA 433
                 A   +++  E   P S+  ++ + A
Sbjct: 464 DVRRGKAFTKRIVALEPENPGSYVLLNNMYA 494


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 328/588 (55%), Gaps = 39/588 (6%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           +F+ +   ++  +N  I  ++N      A   + +M         YT    L AC  LL 
Sbjct: 44  VFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLA 103

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           +    Q+HG ++    G +VF  NAL  +YA  GEI  AR LFD +  R+ VSWN+MI G
Sbjct: 104 MGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDG 163

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y+K+G  K    +F +M L                                   K+ V W
Sbjct: 164 YIKSGDVKTAYGVFLDMPL-----------------------------------KNVVSW 188

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T++I G  + G+  +AL L  EM +     D  +I+S++++CA L +L  G+ +H   + 
Sbjct: 189 TSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLN 248

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEAL 409
            GVD D ++  AL++MY KCG  ++A +VF  +    ++V  W +MI+G+A +G+ +EAL
Sbjct: 249 NGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEAL 308

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
             ++++ +E ++P+S TF +VL AC +  L E G+  F S+   + + PS++HY CM++L
Sbjct: 309 EWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDL 368

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGRS  +D+A +LIK +P KP+++IW  LL  C +  D   G     HL E++  ++G Y
Sbjct: 369 LGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRY 428

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           I L+ + AA G+W++ A +R  MKS  V      S + ++  VH+F++  + HP+ E I 
Sbjct: 429 IQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQ 488

Query: 590 EELSKLIKKL-QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
            +L ++ ++L Q+ G+ P TK +L D + EEK  ++  HSEKLA+A+ LI    G T IR
Sbjct: 489 LKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTT-IR 547

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           ++KN+R+C DCH   K  S I  R II+RD  RFHHF  G+CSCKD W
Sbjct: 548 VIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 159/307 (51%), Gaps = 15/307 (4%)

Query: 37  NDVELAKRLQSH---MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISW 93
           N + + + LQ H   + L F   +  F  N LLH YA  G++  AR LFD +P RD +SW
Sbjct: 100 NLLAMGEALQVHGLVIKLGF--GSDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSW 157

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N ++  + +SG V+    +F  MP+++ VS+ + I+G    G S EAL +   MQ   FE
Sbjct: 158 NIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFE 217

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                  S L ACA L  L +G+ +H  ++   +  +  +  AL +MY K G++++A  +
Sbjct: 218 LDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSV 277

Query: 214 FDRM--NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
           F ++  N +++  W  MI G+  +G+  + ++ F  M+  G+ P+ +T + +L AC   G
Sbjct: 278 FGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGG 337

Query: 272 RIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
            +++   LF  +K   NV      +  M+    ++G+ ++A  L  +M    ++P     
Sbjct: 338 LVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKM---PMKPSAVIW 394

Query: 327 SSVVSSC 333
            +++ +C
Sbjct: 395 GALLKAC 401



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 14/139 (10%)

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A  VFN + + N   WN++I  Y+ + +   A   Y ++L  ++  +S+TF  +L AC  
Sbjct: 41  AQRVFNGITSPNTFMWNAIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRAC-- 98

Query: 437 ADLFERGQNHFDSISAVHGITPSL----DHYA--CMINLLGRSSDVDKAVDLIKSLPHKP 490
            +L   G+        VHG+   L    D +A   ++++     ++  A  L  ++P + 
Sbjct: 99  RNLLAMGEA-----LQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPER- 152

Query: 491 NSLIWSTLLSVCAMKGDIK 509
           +++ W+ ++      GD+K
Sbjct: 153 DAVSWNIMIDGYIKSGDVK 171


>gi|115453917|ref|NP_001050559.1| Os03g0582100 [Oryza sativa Japonica Group]
 gi|113549030|dbj|BAF12473.1| Os03g0582100 [Oryza sativa Japonica Group]
          Length = 629

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 306/541 (56%), Gaps = 20/541 (3%)

Query: 175 GKQIHGKIVV-GNLGGN--VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           G Q+H + VV G LGG+    +  A+   YA   E D AR +FD M  RN V+WN +I G
Sbjct: 90  GAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKG 149

Query: 232 YLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTG--------------RIDD 275
           Y + G+ ++ I LF++M+  G  + PD  T   +L    + G               ++D
Sbjct: 150 YAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLVSLYAARRTLED 209

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A   F  +   D + W++MI  Y    +EE AL++F  ML +D++P +F  S+V S C +
Sbjct: 210 AKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGR 269

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM 395
           +  L  G+ VH  ++    + D  + +AL+ MY  CG  +DA  VF+     NV+S+NSM
Sbjct: 270 MGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSM 329

Query: 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455
           I+   Q+G   EAL  + ++    L PD  T ++++S+  HA L   G   F+S+  + G
Sbjct: 330 ISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEG 389

Query: 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515
           I P   HYAC++++L RS ++ KA+  I  +P +  + +W  +L  C+   DI+ G+  A
Sbjct: 390 IKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIA 449

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
             LFE+EP  A  YI+L N+YA  GRW +   +RS M  + V K  A+SWIE+  + ++F
Sbjct: 450 EMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRF 509

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
             +DR+HP +  IY  L +LI  ++ AG+ P+     H+ Q + K +S+ YH EKLA A+
Sbjct: 510 GVDDRSHPISREIYRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAF 569

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
             +  P G T +RIMKN+RVCGDCH   K+ S + GR IILRD+ RFHHF  G CSC D 
Sbjct: 570 GDLAAPSGGT-LRIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDY 628

Query: 696 W 696
           W
Sbjct: 629 W 629



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 146/324 (45%), Gaps = 62/324 (19%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG------------ 104
           ++T L   +L FYA   +   AR +FD MP R+ ++WNAL+  +A++G            
Sbjct: 107 DSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDM 166

Query: 105 ---------------------------------------SVQDLRALFDKMPIRDSVSYN 125
                                                  +++D +  FD++   D + ++
Sbjct: 167 KREGSHVAPDRYTFPALLSGIGREGGSGRTLVSLYAARRTLEDAKVAFDQVGSSDPIVWS 226

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
           + I+ + N      AL +F  M     +PT + + +  + C ++  L  GKQ+H   +  
Sbjct: 227 SMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKS 286

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   +  + NAL  MY+  G I+ A+ +F   +  N++S+N MIS   ++G PK+ ++ F
Sbjct: 287 NTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHF 346

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV--------CWTTMIVG 297
           ++M+  GL PDEVT+ N++ +    G + +  ++F+ + + + +        C   M+  
Sbjct: 347 RQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLAR 406

Query: 298 YTQNGKEEDALILFNEMLSEDVRP 321
             + GK   A+   NEM  E   P
Sbjct: 407 SGEIGK---AMKTINEMPFEAEAP 427



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/352 (20%), Positives = 141/352 (40%), Gaps = 59/352 (16%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD--R 151
            A+LS +A        R +FD MP R++V++N  I G+A  G   EA+ +F  M+++   
Sbjct: 113 TAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSH 172

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P  YT  + L+                   +G  GG+      L  +YA    ++ A+
Sbjct: 173 VAPDRYTFPALLSG------------------IGREGGS---GRTLVSLYAARRTLEDAK 211

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             FD++ + + + W+ MIS Y+   + +  + +F  M    + P +   S +   C + G
Sbjct: 212 VAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMG 271

Query: 272 R-----------------------------------IDDAGRLFHVIKEKDNVCWTTMIV 296
                                               I+DA ++F      + + + +MI 
Sbjct: 272 ILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMIS 331

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVD 355
              Q+G  ++AL  F +M    + PD+ ++ +++SS      ++ G Q+ +    + G+ 
Sbjct: 332 ALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIK 391

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
                 + ++DM  + G    A    N MP         ++ G     +D+E
Sbjct: 392 PMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIE 443



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D   +NALL+ ++  G + D + +F      + +SYN+ I+     G+ +EAL+ F +M
Sbjct: 290 KDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQM 349

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA-LTDMYAKGGE 206
           +     P + T ++ +++      +  G Q+   +V       ++   A + DM A+ GE
Sbjct: 350 KFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGE 409

Query: 207 IDKARWLFDRMN-NRNLVSWNLMISGYLKN---GQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           I KA    + M        W +++    K+      K+  ++  EM+     P E T   
Sbjct: 410 IGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEME-----PYEATNYI 464

Query: 263 ILGACF-QTGRIDDAGRLFHVIKEK-----DNVCWTTM 294
           +LG  + + GR  +A ++  ++ E+     D   W  M
Sbjct: 465 LLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEM 502


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 228/654 (34%), Positives = 353/654 (53%), Gaps = 69/654 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F+ +   + + +NT I G A       +L ++  M      P  YT    L +CA+  
Sbjct: 19  SVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSK 78

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMY----------------------------- 201
               G+QIHG+++      +++V  +L  MY                             
Sbjct: 79  TFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTALIT 138

Query: 202 --AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
             A  G+I  A+ LFD +  +++VSWN MISGY + G  K+ ++LF+EM  + + PDE T
Sbjct: 139 GYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDEST 198

Query: 260 VSNILGACFQTGRI----------DDAG-------------------------RLFHVIK 284
              +L AC  +G I          DD G                          LF  + 
Sbjct: 199 YVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQGLS 258

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD + W T+I GYT     ++AL+LF EML     P+  ++ SV+ +CA L ++  G+ 
Sbjct: 259 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRW 318

Query: 345 VHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +H      + GV +   + ++LIDMY KCG  + A  VFN M  +++ SWN+MI G+A +
Sbjct: 319 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMH 378

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+   +  L+ ++ +  ++PD  TFV +LSAC H+ + + G++ F S++  + +TP L+H
Sbjct: 379 GRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEH 438

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+LLG S    +A ++I ++  +P+ +IW +LL  C M G+++  E  A++L ++E
Sbjct: 439 YGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIE 498

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N   YI+LSN+YA+ GRWEDVA IR+ +  K +KK    S IE+D+ V +FV  D+ H
Sbjct: 499 PENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFH 558

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+   IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    
Sbjct: 559 PQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 618

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T + I+KN+RVC +CH   K  S I  R I+ RD  RFHHF  G CSC D W
Sbjct: 619 G-TKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 131/255 (51%), Gaps = 33/255 (12%)

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A  +F  I+E + + W TMI G+  +     +L L+  M+S  + P+ ++   ++ SCAK
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS- 394
             +   GQ +HG+ + LG D DL V ++LI MY +    +DA+ VF+    R+VVS+ + 
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 395 ------------------------------MINGYAQNGQDLEALALYDKLLQENLKPDS 424
                                         MI+GYA+ G   EAL L++++++ N++PD 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            T+V+VLSAC H+   E G+     +   HG   +L     +I+L  +  +V+ A  L +
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDD-HGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 485 SLPHKPNSLIWSTLL 499
            L +K + + W+TL+
Sbjct: 256 GLSYK-DVISWNTLI 269



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 34/160 (21%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYE-PNTTFLHNRLLHFYAKSGKLF 76
           G+   +     ++  C  +  +++ + +  ++D       N + L   L+  YAK G + 
Sbjct: 292 GETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 351

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A  +F+ M  + + SWNA+                               I GFA  G 
Sbjct: 352 AAHQVFNSMLHKSLSSWNAM-------------------------------IFGFAMHGR 380

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLDLRR 174
           +  +  +FSRM+K   EP D T V  L+AC+   +LDL R
Sbjct: 381 ADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR 420


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/573 (35%), Positives = 326/573 (56%), Gaps = 39/573 (6%)

Query: 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR 220
           +A+  C     LR G+Q+H ++V       +++   L  MYA+ G ++ A  + D M  R
Sbjct: 40  AAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPER 99

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------ 268
           N+VSW  MISGY +N +P +  DLF  M   G  P+E T++++L +C             
Sbjct: 100 NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQ 159

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    ++  I +A R+F ++  +D V +TT++ GYT+ G 
Sbjct: 160 VHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGL 219

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
           +E+AL LF ++ +E ++ ++ + S ++++ + L+S+ +G+ VHG  +   +   + + ++
Sbjct: 220 DEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNS 279

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LIDMY KCG    +  VF+ MP R+VVSWN+M+ GY ++G   E + L+ + + + +KPD
Sbjct: 280 LIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLF-RFMCDKVKPD 338

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           S T ++VL    H  L + G + FD I        +  HY C+I+LLGRS  ++KA+ LI
Sbjct: 339 SVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLI 398

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +P +P   IW +LL  C +  ++  GE  A+ LF++EP NAG Y++LSN+YAA   W+
Sbjct: 399 QKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWK 458

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  +R  M  K V K    SW+ +D  +H F S +R HP  E I  +++++   ++ AG
Sbjct: 459 DVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAG 518

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           F P+   VLHD  +E+K + +  HSEKLA+ + L+  P  +T I++MKN+R+C DCH F 
Sbjct: 519 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLT-IQVMKNLRICVDCHNFA 577

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           KF S + GR I LRD NRFH    G C+C D W
Sbjct: 578 KFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 145/260 (55%), Gaps = 9/260 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++LL  +ARS ++Q+ R +FD +P RD VSY T ++G+   G   EAL +F ++  +  +
Sbjct: 177 SSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQ 236

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T    LNA + L  +  GKQ+HG I+   L   + ++N+L DMY+K G++  +R +
Sbjct: 237 CNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRV 296

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           FD M  R++VSWN M+ GY ++G   + + LF+ M    + PD VT+  +L      G +
Sbjct: 297 FDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM-CDKVKPDSVTLLAVLLGYSHGGLV 355

Query: 274 DDAGRLF-HVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           D+   +F H++KE+  +     +  +I    ++G+ E AL+L  +M     +P +    S
Sbjct: 356 DEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKM---PFQPTRAIWGS 412

Query: 329 VVSSCAKLASLYHGQVVHGK 348
           ++ +C   A+++ G+ V  K
Sbjct: 413 LLGACRVHANVHVGEFVAQK 432



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 177/382 (46%), Gaps = 72/382 (18%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L+  +AR G+++D   + D MP R+ VS+   I+G++      EA  +F  M +   EP 
Sbjct: 76  LVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPN 135

Query: 156 DYTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           ++T  S L +C  +Q +   + KQ+H   +  N   ++FV ++L DMYA+   I +AR +
Sbjct: 136 EFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRV 195

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD +  R++VS+  ++SGY + G  ++ ++LF+++   G+  ++VT S +L A       
Sbjct: 196 FDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSM 255

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G++  + R+F  + E+  V W  M++GY
Sbjct: 256 DYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGY 315

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            ++G   + + LF  M  + V+PD  ++                      AV+LG     
Sbjct: 316 GRHGMAYEVVQLFRFM-CDKVKPDSVTL---------------------LAVLLGYSHGG 353

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           LV   L DM+    +  +  T+ N         +  +I+   ++GQ  +AL L  K+   
Sbjct: 354 LVDEGL-DMFDH--IVKEQSTLLNTQ------HYGCVIDLLGRSGQLEKALLLIQKM--- 401

Query: 419 NLKPDSFTFVSVLSAC-LHADL 439
             +P    + S+L AC +HA++
Sbjct: 402 PFQPTRAIWGSLLGACRVHANV 423



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 6/142 (4%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           LY+ G    +  ++ L+   + ++ ++  K++   + L    P    L N L+  Y+K G
Sbjct: 230 LYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHG-LILRRELPFFMALQNSLIDMYSKCG 288

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGS----VQDLRALFDKMPIRDSVSYNTAIA 129
           KL Y+R +FD MP R ++SWNA+L  + R G     VQ  R + DK+   DSV+    + 
Sbjct: 289 KLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVK-PDSVTLLAVLL 347

Query: 130 GFANKGFSREALQVFSRMQKDR 151
           G+++ G   E L +F  + K++
Sbjct: 348 GYSHGGLVDEGLDMFDHIVKEQ 369


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/644 (33%), Positives = 357/644 (55%), Gaps = 53/644 (8%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L+  + + G ++    +FD+MP+RD VS+N+ ++G+   G    +L  F  M 
Sbjct: 158 DVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEML 217

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +   +   +  +SAL AC+    LR G +IH +++   L  ++ V+ +L DMY K G++D
Sbjct: 218 RLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVD 277

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F+R+ ++N+V+WN MI G  ++ +               + PD +T+ N+L +C 
Sbjct: 278 YAERVFNRIYSKNIVAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCS 322

Query: 269 QTGR--------------------------IDDAGR---------LFHVIKEKDNVCWTT 293
           Q+G                           +D  G+         +F+ + EK+ V W T
Sbjct: 323 QSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNT 382

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+  Y QN + ++AL +F  +L+E ++PD  +I+SV+ + A+LAS   G+ +H   + LG
Sbjct: 383 MVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLG 442

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  +  +S+A++ MY KCG    A   F+ M  ++VVSWN+MI  YA +G    ++  + 
Sbjct: 443 LGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFS 502

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++  +  KP+  TFVS+L+AC  + L + G   F+S+   +GI P ++HY CM++LLGR+
Sbjct: 503 EMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRN 562

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
            ++D+A   I+ +P  P + IW +LL+      D+   E+AARH+  L+  N G Y++LS
Sbjct: 563 GNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLS 622

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           NMYA  GRWEDV  I+  MK + + K    S ++I+ +   F+++DR+H  T +IY+ L 
Sbjct: 623 NMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLD 682

Query: 594 KLIKKLQEAGFSPN-TKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            L+KK+ E  +  + TK    D   +++  S  YHS KLA+ + LI    G  P+ + KN
Sbjct: 683 ILLKKIGEDIYLHSLTKFRPLDVA-KKRGNSPEYHSVKLAICFGLISTAIG-NPVIVRKN 740

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            R+C DCH   K  S +  R I++ D+  FHHF  G CSC+D W
Sbjct: 741 TRICDDCHRAAKKISQVTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 217/446 (48%), Gaps = 54/446 (12%)

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156
           L     SG + +   +F+KM   D+  +N  I G+ N G  +EA+  + RM+ +     +
Sbjct: 65  LCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDN 124

Query: 157 YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216
           +T    + AC +LL L  G+++HGK++      +V+V N L DMY K G I+ A  +FD 
Sbjct: 125 FTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDE 184

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------- 267
           M  R+LVSWN M+SGY  +G     +  F+EM  LG   D   + + LGAC         
Sbjct: 185 MPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSG 244

Query: 268 -----------------FQT---------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                             QT         G++D A R+F+ I  K+ V W  MI G    
Sbjct: 245 MEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGM--- 301

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
            +E+D +I           PD  ++ +++ SC++  +L  G+ +HG A+       L++ 
Sbjct: 302 -QEDDKVI-----------PDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLE 349

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           +AL+DMY KCG    A  VFN M  +N+VSWN+M+  Y QN Q  EAL ++  +L E LK
Sbjct: 350 TALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLK 409

Query: 422 PDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           PD+ T  SVL A   A+L  R +     S     G+  +      ++ +  +  D+  A 
Sbjct: 410 PDAITIASVLPAV--AELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAR 467

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +    +  K + + W+T++   A+ G
Sbjct: 468 EFFDGMVCK-DVVSWNTMIMAYAIHG 492



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 160/348 (45%), Gaps = 37/348 (10%)

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
           P+++ ++  L    ++G + +A  +F  +   D   W  +I GYT NG  ++A+  +  M
Sbjct: 56  PNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRM 115

Query: 315 LSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
             E +R D F+   V+ +C +L +L  GQ VHGK + +G D D+ V + LIDMY K G  
Sbjct: 116 ECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFI 175

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           + A  VF+ MP R++VSWNSM++GY  +G  L +L  + ++L+   K D F  +S L AC
Sbjct: 176 ELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGAC 235

Query: 435 LHADLFERGQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK---- 489
                   G   H   I +   +   +     +I++ G+   VD A  +   +  K    
Sbjct: 236 SIEHCLRSGMEIHCQVIRSELELDIMVQ--TSLIDMYGKCGKVDYAERVFNRIYSKNIVA 293

Query: 490 ---------------PNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYI 530
                          P+ +    LL  C+  G +  G+     A R +F        PY+
Sbjct: 294 WNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFL-------PYL 346

Query: 531 MLS----NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           +L     +MY  CG  +    + + M  KN+  +       + N+ +K
Sbjct: 347 VLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYK 394



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 131/259 (50%), Gaps = 9/259 (3%)

Query: 65  LLHFYAKSGKLFYARDL----FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LL   ++SG L   + +      KM L  ++   AL+  + + G ++    +F++M  ++
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN 376

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            VS+NT +A +      +EAL++F  +  +  +P   T  S L A A+L     GKQIH 
Sbjct: 377 MVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHS 436

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            I+   LG N F+ NA+  MYAK G++  AR  FD M  +++VSWN MI  Y  +G  + 
Sbjct: 437 YIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRT 496

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMI 295
            I  F EM+  G  P+  T  ++L AC  +G ID+    F+ +K +  +      +  M+
Sbjct: 497 SIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCML 556

Query: 296 VGYTQNGKEEDALILFNEM 314
               +NG  ++A     EM
Sbjct: 557 DLLGRNGNLDEAKCFIEEM 575



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 98/235 (41%), Gaps = 40/235 (17%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           + TF+ N +++ YAK G L  AR+ FD M  +D++SWN                      
Sbjct: 445 SNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWN---------------------- 482

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQLLDLRR 174
                    T I  +A  GF R ++Q FS M+   F+P   T VS L AC  + L+D   
Sbjct: 483 ---------TMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGW 533

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK 234
           G     K+  G +   +     + D+  + G +D+A+   + M    LV    +    L 
Sbjct: 534 GFFNSMKVEYG-IDPGIEHYGCMLDLLGRNGNLDEAKCFIEEM---PLVPTARIWGSLLA 589

Query: 235 NGQPKKCIDL--FQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK 286
             +    + L       +L L  D      +L   + + GR +D  R+ +++KE+
Sbjct: 590 ASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQ 644


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/695 (32%), Positives = 355/695 (51%), Gaps = 90/695 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L N L+  YAK G+L  A ++F  M  R+++SW AL+                     
Sbjct: 252 TMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALM--------------------- 290

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQ 177
                      GF   G +   L++   M+      P +YT  ++L AC    D+  G  
Sbjct: 291 ----------VGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVG 340

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNG 236
           IHG  V      +  V ++L  +Y+KGG I  AR +FD     R L +WN MISGY   G
Sbjct: 341 IHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAG 400

Query: 237 QPKKCIDLFQEMQLLGL------NPDEVTVSNILGAC--------------------FQT 270
             +  + +F+EM+           PDE T +++L AC                    F T
Sbjct: 401 HGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFST 460

Query: 271 -----------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                            GR+  A ++F  ++ K+ + WTT++VG+ Q G+  +AL LF  
Sbjct: 461 ASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRR 520

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
                 R D   +SS+V   A  A +  G+ VH   V      D+   ++++DMY KCG+
Sbjct: 521 FWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGL 580

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D+A  +F  +P RNVVSW +MING  ++G   EA+A+++++    ++PD  T++++LSA
Sbjct: 581 PDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSA 640

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L +  + +F  I     + P  +HYACM++LLGR+ ++ +A DLI+++P +P   
Sbjct: 641 CSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVG 700

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           +W TLLS C +  D+  G  A   L  ++  N   Y+ LSN++A  G W +   +R +M+
Sbjct: 701 VWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRECHKVRDAMR 760

Query: 554 SKNVKKFAAYSWIEIDNKVHKFV--SEDRTHPETEIIYEELSKLIKKLQEA-GF-SPNTK 609
            + +KK    SW+EI  +VH F    ++  HP+   I   L  +  +++E  G+ + + +
Sbjct: 761 RRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIRRVLRDVETRVREQLGYCADDVQ 820

Query: 610 LVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGV--------TPIRIMKNIRVCGDCHL 661
             LHD  EE + +S+  HSE+LA+   L++  +GV         PIR+ KN+RVCGDCH 
Sbjct: 821 FALHDVDEESRAESLRAHSERLAVGLWLLR--NGVDGGGGGHRQPIRVYKNLRVCGDCHE 878

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           F K  S ++ R +++RD+NRFH F  G CSCKD W
Sbjct: 879 FFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 184/395 (46%), Gaps = 54/395 (13%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L A A+   LR G Q+HG +     G +  + N L DMYAK GE+D A  +F  M +RN+
Sbjct: 224 LRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNV 283

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQT----------- 270
           VSW  ++ G+L++G    C+ L  EM+      P+E T+S  L AC  T           
Sbjct: 284 VSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHG 343

Query: 271 ------------------------GRIDDAGRLFHVIK-EKDNVCWTTMIVGYTQNGKEE 305
                                   GRI DA R+F      +    W  MI GY   G   
Sbjct: 344 LCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGR 403

Query: 306 DALILFNEMLS-----EDV-RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DD 357
           DAL++F EM       ED  +PD+F+ +S++ +C  L +   G  VH      G     +
Sbjct: 404 DALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASN 463

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
            +++ AL+DMY KCG    A  VF  +  +N + W +++ G+AQ GQ +EAL L+ +  +
Sbjct: 464 AILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWR 523

Query: 418 ENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476
              + D+    S++       L E+G Q H   + +  G   S  +   ++++  +    
Sbjct: 524 SGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGN--SIVDMYLKCGLP 581

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           D+A  + + +P + N + W+T+++     G  KHG
Sbjct: 582 DEAERMFREIPAR-NVVSWTTMIN-----GLGKHG 610



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 155/312 (49%), Gaps = 16/312 (5%)

Query: 217 MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276
           M  R +++  L  S   K    +  + L   +  LG   D +  +N++    + G +D A
Sbjct: 214 MERRKMIADLLRASA--KGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMA 271

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAK 335
           G +F  +++++ V WT ++VG+ Q+G     L L  EM  + +  P+++++S+ + +C  
Sbjct: 272 GEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCV 331

Query: 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNS 394
              +  G  +HG  V  G ++  +V+S+L+ +Y K G   DA  VF+     R + +WN+
Sbjct: 332 TEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNA 391

Query: 395 MINGYAQNGQDLEALALYDKLL------QENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
           MI+GYA  G   +AL ++ ++       ++  +PD FTF S+L AC        G     
Sbjct: 392 MISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHA 451

Query: 449 SISAVHGITPSLDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           +++A    T S    A  ++++  +   +  A+ + + L  K N++ W+T++   A +G 
Sbjct: 452 AMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERK-NAIQWTTVVVGHAQEGQ 510

Query: 508 IKHGEMAARHLF 519
           +    M A  LF
Sbjct: 511 V----MEALELF 518


>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
 gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
          Length = 739

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/677 (31%), Positives = 362/677 (53%), Gaps = 84/677 (12%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  + + G +    A FD++  ++  S+   I+ FA  G  REAL +F +M+++  +
Sbjct: 73  NNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNGHHREALVLFRQMEREGVK 132

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
             + T  + L  C+ + DL  G+ IHG+++      +V + NAL +MY+K G + +AR  
Sbjct: 133 ANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAK--KDVVIGNALVNMYSKCGSLREARAS 190

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF----- 268
           F  M  R++VSW  MI+   ++G+  + +++F EM    + P+E++   +LGAC      
Sbjct: 191 FQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVAPNEISCLAVLGACSNLGDR 250

Query: 269 --------------------------------QTGRIDDAGRLFHVIKE--KDNVCWTTM 294
                                           + G   DA R+F  ++   ++ V W +M
Sbjct: 251 SQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARRVFDSLQHSARNAVSWASM 310

Query: 295 IVGYTQNGKEEDALILFNEMLS--EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           I  YT N + +  + L+ EM+   E  + D  +   V+ +C+ L++L  G+ VH + V  
Sbjct: 311 IAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVHEEIVAA 370

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  D+L ++ A+++MYCKCG   +A  VF+ M  RN+++WNSM+ GY Q+G    AL L+
Sbjct: 371 GFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHGHPKRALQLF 430

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           +    + + PD  TFV++L+AC HA + + G  HF SI A  G+ PS+DHY CM+++LGR
Sbjct: 431 ELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFGSIRADFGMEPSVDHYVCMVDMLGR 490

Query: 473 SSDVDKAVDLIKSLPHKPNS----LIWSTLLSVCAMKGDIKHGEMAAR------------ 516
           +  +D A  L++ +P   N     + W  LL+ C +  D+K    AAR            
Sbjct: 491 AGWLDAAERLVERMPAFSNPADEFVPWMALLASCKVHTDVKR---AARISSVLSAKKKKL 547

Query: 517 -----------HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM-----KSKNVKKF 560
                      HL      +A P +MLSN+YA   +WE++  +R+ +     K     + 
Sbjct: 548 LSSSSSGSGSWHLKN----SAAPLVMLSNIYAQAKKWEEMTGVRNEITEEWSKGMITSRQ 603

Query: 561 AAYSWIEIDNKVHKFVSED-RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
              S+IE++  +H+FV+     HPE + I  E+ +L + ++ AG+ P+T +V+HD +E E
Sbjct: 604 RGCSFIEVEGAIHEFVAGKLHLHPEHKGIDSEMKRLEELIKSAGYVPDTSVVMHDVEEAE 663

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K   +  HSE++A+A+ L++     T +R++ N+R+C DCH  +K  S  +GR I++RD+
Sbjct: 664 KEGVLHQHSERMAIAFGLMRGGSD-TIVRVVNNLRICSDCHAAVKLISKTVGREILVRDT 722

Query: 680 NRFHHFVGGNCSCKDNW 696
            RFHHF  G CSC+D W
Sbjct: 723 RRFHHFASGECSCQDYW 739



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 191/386 (49%), Gaps = 47/386 (12%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +++H +++   L  + ++ N L  +Y K G +D+A   FDR+  +N+ SW ++IS + +N
Sbjct: 54  EELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQN 113

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------------------- 267
           G  ++ + LF++M+  G+  +EVT++ +LG C                            
Sbjct: 114 GHHREALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAKKDVVIGNA 173

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G + +A   F  +  +D V WTTMI   +++G+  +A+ +F EM+SE+V P+
Sbjct: 174 LVNMYSKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVAPN 233

Query: 323 KFSISSVVSSCAKLASLYHGQVVHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
           + S  +V+ +C+ L      +V+H    +  L +D  L+V++ LI  Y +CG   DA  V
Sbjct: 234 EISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARRV 293

Query: 381 FNMM--PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ--ENLKPDSFTFVSVLSACLH 436
           F+ +    RN VSW SMI  Y  N Q    + LY +++Q  E+ K D   ++ VL AC  
Sbjct: 294 FDSLQHSARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSS 353

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
               + G+   + I A  G    L     ++N+  +   + +A ++   +  + N + W+
Sbjct: 354 LSALKVGRQVHEEIVAA-GFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKAR-NMIAWN 411

Query: 497 TLLSVCAMKGDIKHGE-MAARHLFEL 521
           ++     M G  +HG    A  LFEL
Sbjct: 412 SM-----MGGYTQHGHPKRALQLFEL 432



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 164/357 (45%), Gaps = 47/357 (13%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           G+  + R +  K   +D++  NAL++ +++ GS+++ RA F +M +RD VS+ T I   +
Sbjct: 154 GRSIHGRVIAAK---KDVVIGNALVNMYSKCGSLREARASFQEMVVRDVVSWTTMITALS 210

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN--LGGN 190
             G   EA+++F  M  +   P + + ++ L AC+ L D  + + IH  I  G   L   
Sbjct: 211 EHGEWNEAVEIFWEMVSENVAPNEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKK 270

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           + V N L   Y + G    AR +FD + +  RN VSW  MI+ Y  N Q K  ++L+QEM
Sbjct: 271 LVVANTLIHTYGRCGSPSDARRVFDSLQHSARNAVSWASMIAAYTSNEQAKAGVELYQEM 330

Query: 249 ----------------------QLLGLNPDEVTVSNILGACF---------------QTG 271
                                  L  L         I+ A F               + G
Sbjct: 331 IQREESKKMDPVAYLCVLEACSSLSALKVGRQVHEEIVAAGFGDELPLAGAIVNMYCKCG 390

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
            + +A  +F  +K ++ + W +M+ GYTQ+G  + AL LF     + V PD+ +  ++++
Sbjct: 391 SLVEAREVFDGMKARNMIAWNSMMGGYTQHGHPKRALQLFELACLDGVLPDEITFVTILT 450

Query: 332 SCAKLASLYHGQVVHGKAVV--LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           +C+  A +    V H  ++    G++  +     ++DM  + G  D A  +   MP 
Sbjct: 451 ACSH-AGMVKPGVWHFGSIRADFGMEPSVDHYVCMVDMLGRAGWLDAAERLVERMPA 506



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 20/232 (8%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H + +  G+D D  + + L+ +Y K G  D AW  F+ +  +NV SW  +I+ +AQNG 
Sbjct: 56  LHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNGH 115

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPSLDHY 463
             EAL L+ ++ +E +K +  T  +VL  C        G++ H   I+A   +       
Sbjct: 116 HREALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAKKDVVIG---- 171

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM--AARHLFEL 521
             ++N+  +   + +A    + +  + + + W+T+++  +     +HGE   A    +E+
Sbjct: 172 NALVNMYSKCGSLREARASFQEMVVR-DVVSWTTMITALS-----EHGEWNEAVEIFWEM 225

Query: 522 EPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
              N  P  I    +  AC    D + +R       + +F A   +E+D K+
Sbjct: 226 VSENVAPNEISCLAVLGACSNLGDRSQVRV------IHEFIASGGLELDKKL 271



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 82/195 (42%), Gaps = 35/195 (17%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           AY  ++  C+ ++ +++ +++   +    +  +   L   +++ Y K G L  AR++FD 
Sbjct: 343 AYLCVLEACSSLSALKVGRQVHEEIVAAGF-GDELPLAGAIVNMYCKCGSLVEAREVFDG 401

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           M  R++I+WN+++                                G+   G  + ALQ+F
Sbjct: 402 MKARNMIAWNSMM-------------------------------GGYTQHGHPKRALQLF 430

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN--ALTDMYA 202
                D   P + T V+ L AC+    ++ G    G I   + G    V +   + DM  
Sbjct: 431 ELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFGSI-RADFGMEPSVDHYVCMVDMLG 489

Query: 203 KGGEIDKARWLFDRM 217
           + G +D A  L +RM
Sbjct: 490 RAGWLDAAERLVERM 504


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 226/630 (35%), Positives = 353/630 (56%), Gaps = 14/630 (2%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFA 132
           GK  +AR +  +    D++ +N L++ + + G +   R +FD MP R+ VS N  ++G+A
Sbjct: 35  GKAVHARVV--RAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYA 92

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           + G  R+AL +   ++   F   +Y   SA+ A A +     G+Q HG  +   L  + +
Sbjct: 93  SSGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPY 149

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           V +A+  MY +   +D+A     +   +     + +I   L +    K + L  ++    
Sbjct: 150 VCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQA 209

Query: 253 LNPDEVTVSNILGACF--QTGRID---DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           L    + ++  +G+      G+ D   +A R+F V+ EK+ V WT ++  YTQN   EDA
Sbjct: 210 LK-RRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDA 268

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L LF +M  E VRP++F+ +  ++SCA LA+L +G  +    +  G    L V +AL++M
Sbjct: 269 LQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNM 328

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL-ALYDKLLQENLKPDSFT 426
           Y K G  +DA  VF  MP R+VVSWNS+I GYA +G+  EA+ A +D L  E + P   T
Sbjct: 329 YSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEV-PSYVT 387

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           F+ VLSAC    L + G  + + +    G+ P  +HY CM+ LL R   +D+A   I+S 
Sbjct: 388 FIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESN 447

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
               + + W +LLS C +  +   G   A  +F+L+P + G Y++LSNMYA   RW+ V 
Sbjct: 448 CIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVV 507

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            +R  M+   V+K    SWI++ ++VH F SED+ HP  E I ++L +LI K++  G+ P
Sbjct: 508 KVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVP 567

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
           N  + LHD ++E+K + + YHSEKLALA+ LI+ P G   IRIMKN+R+C DCH+ +K  
Sbjct: 568 NIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKG-EAIRIMKNVRICDDCHVAIKLI 626

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S   GR I++RD+ RFH    G CSC D W
Sbjct: 627 SLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 183/413 (44%), Gaps = 81/413 (19%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRAL-------FD 114
           +N L+  Y K G+L  AR +FD MP R+ +S N L+S +A SG  +D  AL        +
Sbjct: 53  YNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLN 112

Query: 115 KMPIRDSVSYNTAI---------------AGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           +  +  +V+    +               AG A   +   A+           E   Y+ 
Sbjct: 113 EYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSK 172

Query: 160 --------------VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
                            L  CA   ++  G Q+H + +   L  NV+V +AL DMY K  
Sbjct: 173 KHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCD 232

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS---- 261
              +A  +F+ +  +N+VSW  +++ Y +N   +  + LF +M++ G+ P+E T +    
Sbjct: 233 FPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALN 292

Query: 262 -----------NILGACF--------------------QTGRIDDAGRLFHVIKEKDNVC 290
                      N LGAC                     ++G ++DA R+F  +  +D V 
Sbjct: 293 SCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVS 352

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA----SLYHGQVVH 346
           W ++I+GY  +G+  +A+  F++ML  +  P   +   V+S+CA+L       Y+  ++ 
Sbjct: 353 WNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMM 412

Query: 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDA--WTVFNMMPTRNVVSWNSMIN 397
            +   +GV       + ++ + C+ G  D+A  +   N + T +VV+W S+++
Sbjct: 413 KE---VGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGT-DVVAWRSLLS 461


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/555 (36%), Positives = 319/555 (57%), Gaps = 37/555 (6%)

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IH +++      + F+ + L  MY K G  + A+ LFD M NR+LVSWN ++SG    G 
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 238 PKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQTGRIDD--------------------- 275
              C++ F  M+   G  P+EVT+ +++ AC   G +D+                     
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280

Query: 276 --------------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                         A +LF  +  +  V W +M+V +  NG  E  + LFN M    + P
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINP 340

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D+ ++ +++ +C         + +H      G + D+++++AL+++Y K G  + +  +F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             +  R+ ++W +M+ GYA +    EA+ L+D +++E ++ D  TF  +LSAC H+ L E
Sbjct: 401 EEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVE 460

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G+ +F+ +S V+ + P LDHY+CM++LLGRS  ++ A +LIKS+P +P+S +W  LL  
Sbjct: 461 EGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGA 520

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C + G+++ G+  A  L  L+P +   YIMLSN+Y+A G W   + +R  MK + + +  
Sbjct: 521 CRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRXASKVRXLMKERRLTRNP 580

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
             S+IE  NK+H+FV  D+ HP ++ I+ +L +LI+K+ EAG +P T+ VLHD  EE KV
Sbjct: 581 GCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKV 640

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             I  HSEKLA+A+ L+    GV P+ I KN+R+CGDCH   KFAS +  RTII+RDS R
Sbjct: 641 DMINKHSEKLAIAFGLLVTGSGV-PLIITKNLRICGDCHSTAKFASLLEKRTIIIRDSKR 699

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF  G CSC+D W
Sbjct: 700 FHHFADGLCSCRDYW 714



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/332 (30%), Positives = 169/332 (50%), Gaps = 47/332 (14%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF-EP 154
           L+S + + G  +D + LFD+MP RD VS+N+ ++G + +G+    L  F RM+ +   +P
Sbjct: 180 LVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQP 239

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            + T +S ++ACA +  L  GK +HG +V   + G   V N+L +MY K G +D A  LF
Sbjct: 240 NEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLF 299

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT---- 270
           + M  R+LVSWN M+  +  NG  +K +DLF  M+  G+NPD+ T+  +L AC  T    
Sbjct: 300 EEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGR 359

Query: 271 -------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                                          GR++ +  +F  IK++D + WT M+ GY 
Sbjct: 360 QAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYA 419

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK------AVVLG 353
            +    +A+ LF+ M+ E V  D  + + ++S+C+     + G V  GK      + V  
Sbjct: 420 VHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACS-----HSGLVEEGKKYFEIMSEVYR 474

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           V+  L   S ++D+  + G  +DA+ +   MP
Sbjct: 475 VEPRLDHYSCMVDLLGRSGRLEDAYELIKSMP 506



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 132/262 (50%), Gaps = 13/262 (4%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + + G +     LF++MP+R  VS+N+ +    + G++ + + +F+ M++    
Sbjct: 280 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGIN 339

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T V+ L AC      R+ + IH  I       ++ +  AL ++YAK G ++ +  +
Sbjct: 340 PDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDI 399

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ + +R+ ++W  M++GY  +   ++ I LF  M   G+  D VT +++L AC  +G +
Sbjct: 400 FEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLV 459

Query: 274 DDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           ++  + F ++ E   V      ++ M+    ++G+ EDA  L   M  E   P      +
Sbjct: 460 EEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPME---PSSGVWGA 516

Query: 329 VVSSCAKLASLYHGQVVHGKAV 350
           ++ +C       +G V  GK V
Sbjct: 517 LLGACR-----VYGNVELGKEV 533



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 91/178 (51%), Gaps = 5/178 (2%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           + S+V + +   S+ +   +H + +      D  +   L+ MY K G  +DA  +F+ MP
Sbjct: 142 VQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMP 201

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQ 444
            R++VSWNS+++G +  G     L  + ++  E+  +P+  T +SV+SAC      + G+
Sbjct: 202 NRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGK 261

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSV 501
           +    +    G++        +IN+ G+   +D A  L + +P +  SL+ W++++ +
Sbjct: 262 S-LHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR--SLVSWNSMVVI 316



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 96/206 (46%), Gaps = 15/206 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DII   ALL+ +A+ G +     +F+++  RD++++   +AG+A     REA+++F  M 
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMV 435

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEI 207
           K+  E    T    L+AC+    +  GK+    +  V  +   +   + + D+  + G +
Sbjct: 436 KEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRL 495

Query: 208 DKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE----VTV 260
           + A  L   M        W  ++      G     ++L +E+  QLL L+P +    + +
Sbjct: 496 EDAYELIKSMPMEPSSGVWGALLGACRVYGN----VELGKEVAEQLLSLDPSDHRNYIML 551

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEK 286
           SNI  A    G    A ++  ++KE+
Sbjct: 552 SNIYSA---AGLWRXASKVRXLMKER 574


>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 758

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/647 (31%), Positives = 358/647 (55%), Gaps = 49/647 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L++ +A+ G+++D R +FD M  R+ V++ T + GF      + A+ VF  M      P+
Sbjct: 108 LVNVYAKCGNMEDARRVFDNMLRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 167

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT  + L+AC+ L  L+ G Q H  I+  ++  +  V +AL  +Y+K G ++ A   F 
Sbjct: 168 VYTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFS 227

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
           R+  +N++SW   +S    NG P K + LF EM  + + P+E T+++ L  C        
Sbjct: 228 RIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLEL 287

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       ++G I +A RLF+ + +   V W  MI G+ Q
Sbjct: 288 GTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQ 347

Query: 301 N-----------GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
                        +  +AL LF+++    ++PD F++SSV+S C+++ ++  G+ +H + 
Sbjct: 348 MMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQT 407

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G   D++VS++LI MY KCG  + A   F  M TR +++W SMI G++Q+G   +AL
Sbjct: 408 IKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQAL 467

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            +++ +    ++P++ TFV VLSAC HA +  +  N+F+ +   + I P++DHY CM+++
Sbjct: 468 HIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDM 527

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
             R   +++A++ IK + ++P+  IWS  ++ C   G+++ G  AA  L  L+P +   Y
Sbjct: 528 FVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDPETY 587

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++L NMY +  R+EDV+ +R  M+ + V K   +SWI I +KV+ F +  +THP++ +I 
Sbjct: 588 VLLLNMYLSAERFEDVSRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLIC 647

Query: 590 EELSKLIKKLQEAGFS--PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           + L  L+ K++  G+    + ++   + +EE+      YHSEKLA+ + L   P+  +PI
Sbjct: 648 KSLEDLLAKVKNVGYEMLESVEISDEEEEEEKTSSPNIYHSEKLAITFGLENLPNS-SPI 706

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           R++K+  +C D H F+K+ S + GR II++DS R H F  G CSC +
Sbjct: 707 RVVKSTLICRDSHNFIKYVSTLAGREIIVKDSKRLHKFANGECSCGN 753



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 197/410 (48%), Gaps = 56/410 (13%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           +V  L  C         + +HG ++      N FV + L ++YAK G ++ AR +FD M 
Sbjct: 70  YVPLLQQCLDTRSYSETQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDNML 129

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------- 267
            RN+V+W  ++ G+++N QPK  I +FQEM   G  P   T+S +L AC           
Sbjct: 130 RRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSVYTLSAVLHACSSLQSLKLGDQ 189

Query: 268 ------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + GR++DA + F  I+EK+ + WT+ +     NG 
Sbjct: 190 FHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGA 249

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
               L LF EM++ D++P++F+++S +S C ++ SL  G  V+   +  G + +L V ++
Sbjct: 250 PVKGLRLFVEMIAVDIKPNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNS 309

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ-----------DLEALALY 412
           L+ +Y K G   +A  +FN M   ++V+WN+MI G+AQ  +             EAL L+
Sbjct: 310 LLYLYLKSGCIVEAHRLFNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLF 369

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLG 471
            KL    +KPD FT  SVLS C      E+G Q H  +I    G    +     +I++  
Sbjct: 370 SKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKT--GFLSDVIVSTSLISMYS 427

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE 520
           +   +++A      +  +   + W+++++     G  +HG    A H+FE
Sbjct: 428 KCGSIERASKAFLEMSTR-TMIAWTSMIT-----GFSQHGMSQQALHIFE 471



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 192/402 (47%), Gaps = 61/402 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL S +++ G ++D    F ++  ++ +S+ +A++  A+ G   + L++F  M     +
Sbjct: 207 SALCSLYSKCGRLEDALKTFSRIREKNVISWTSAVSACADNGAPVKGLRLFVEMIAVDIK 266

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T  SAL+ C ++L L  G Q++   +      N+ VRN+L  +Y K G I +A  L
Sbjct: 267 PNEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRL 326

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKK-----------CIDLFQEMQLLGLNPDEVTVSN 262
           F+RM++ ++V+WN MI+G+ +  +  K            + LF ++ L G+ PD  T+S+
Sbjct: 327 FNRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNLSGMKPDLFTLSS 386

Query: 263 ILGAC-----------------------------------FQTGRIDDAGRLFHVIKEKD 287
           +L  C                                    + G I+ A + F  +  + 
Sbjct: 387 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAFLEMSTRT 446

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA----SLYHGQ 343
            + WT+MI G++Q+G  + AL +F +M    VRP+  +   V+S+C+       +L + +
Sbjct: 447 MIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALNYFE 506

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYA 400
           ++  K  +    D       ++DM+ + G  + A      M   P+  +  W++ I G  
Sbjct: 507 IMQKKYKIKPAMDHY---ECMVDMFVRLGRLEQALNFIKKMNYEPSEFI--WSNFIAGCK 561

Query: 401 QNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFE 441
            +G +LE L  Y      +LKP D  T+V +L+  L A+ FE
Sbjct: 562 SHG-NLE-LGFYAAEQLLSLKPKDPETYVLLLNMYLSAERFE 601



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 195/411 (47%), Gaps = 38/411 (9%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E   T  +  C  +  +EL  ++ S      YE N   + N LL+ Y KSG +  A  LF
Sbjct: 269 EFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLR-VRNSLLYLYLKSGCIVEAHRLF 327

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           ++M    +++WNA+++ HA+   +            +D++S         ++G   EAL+
Sbjct: 328 NRMDDASMVTWNAMIAGHAQMMELT-----------KDNLSA-------CHRG--SEALK 367

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +FS++     +P  +T  S L+ C+++L + +G+QIH + +      +V V  +L  MY+
Sbjct: 368 LFSKLNLSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYS 427

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G I++A   F  M+ R +++W  MI+G+ ++G  ++ + +F++M L G+ P+ VT   
Sbjct: 428 KCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVG 487

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC   G +  A   F ++++K  +      +  M+  + + G+ E AL    +M   
Sbjct: 488 VLSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQALNFIKKM--- 544

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +  P +F  S+ ++ C    +L  G     + + L   D       L++MY      +D 
Sbjct: 545 NYEPSEFIWSNFIAGCKSHGNLELGFYAAEQLLSLKPKDP-ETYVLLLNMYLSAERFEDV 603

Query: 378 WTVFNMMPTRNVV-----SWNSM---INGYAQNGQDLEALALYDKLLQENL 420
             V  MM    V      SW S+   +  +  NG+     +L  K L++ L
Sbjct: 604 SRVRKMMEEEKVGKLKDWSWISIKDKVYSFKTNGKTHPQSSLICKSLEDLL 654


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 311/524 (59%), Gaps = 5/524 (0%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS--WNLMISGYL 233
           +Q+H +I+  N   ++     +  + A       A+ +F  +  +   +  WN  +    
Sbjct: 78  RQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALA 137

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-CWT 292
           +   P   I LF  ++   + PD  T S++L AC     + + GR+ H + EK     WT
Sbjct: 138 EGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSN-GRILHGVVEKVGFRSWT 196

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
           +MI GY Q GK ++A+ LF +M    V+ ++ ++ +V+++CA L +L  G  +H  +   
Sbjct: 197 SMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH 256

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G   ++ +S+ LIDMY KCG  ++A  VF  M  R VVSW++MI G A +G+  EAL L+
Sbjct: 257 GFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 316

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
             + Q  ++P+  TF+ +L AC H  L   G+  F S++  +GI P ++HY CM++LL R
Sbjct: 317 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 376

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           +  + +A + I ++P KPN ++W  LL  C +  +++  E A +HL EL+P+N G Y++L
Sbjct: 377 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLNDGYYVVL 436

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YA  GRWED A +R  MK + VKK   +S I +D  VH+FV+ + +HP+TE I++  
Sbjct: 437 SNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEESHPDTEQIFQRW 496

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L+++++  G+ PNT +VL D +E EKVK +  HSEKLAL + L+  P   TPIRIMKN
Sbjct: 497 EELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTP-AETPIRIMKN 555

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C DCH   K  S I+ R I++RD NRFH F   +CSC+D W
Sbjct: 556 LRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%), Gaps = 2/206 (0%)

Query: 75  LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
           LFY    +D  P  D  + +++L A      + + R L   +      S+ + IAG+   
Sbjct: 148 LFYRLRQYDVCP--DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQC 205

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G ++EA+ +F++M++   +  + T V+ L ACA L  L  G +IH          NV + 
Sbjct: 206 GKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRIS 265

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N L DMY K G +++A  +F+ M  R +VSW+ MI G   +G+ ++ + LF +M  +G+ 
Sbjct: 266 NTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIE 325

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLF 280
           P+ VT   +L AC   G I +  R F
Sbjct: 326 PNGVTFIGLLHACSHMGLISEGRRFF 351


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/644 (34%), Positives = 346/644 (53%), Gaps = 38/644 (5%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + N+L++ +A+ G V D   +FD MP RD VS+NT + G+ + G    AL  F  M 
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMN 213

Query: 149 KDRFEPTDYTHV-SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                  D   V +AL AC     L  G++IHG  +   L  +V V  +L DMY K G +
Sbjct: 214 DALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNV 273

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  +F +M  R +V+WN MI GY  N +P    D F +M++ G   + VT  N+L AC
Sbjct: 274 FFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTAC 333

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
            QT                                   G+++ + ++F  I +K  V W 
Sbjct: 334 AQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWN 393

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y      ++A+ LF E+L++ + PD F++++VV +   L S+   + +H   V L
Sbjct: 394 NMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKL 453

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G  D  L+ +A++ MY +CG    +  +F+ MP ++V+SWN++I GYA +GQ   AL ++
Sbjct: 454 GYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMF 513

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           D++    ++P+  TFVSVL+AC  + L   G   F+S+   +G+ P ++HY CM +LLGR
Sbjct: 514 DEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGR 573

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           + ++ + +  I+++P  P S IW +LL+    K DI   E AA  +F+LE  N G Y++L
Sbjct: 574 AGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVL 633

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           S+MYA  GRWEDV  IRS MK K +++  A S +E++NK   FV+ D +HP++E I+E  
Sbjct: 634 SSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIHEFS 693

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L + + E     ++ L   D            HS +LA+A+ LI    G +P+ + KN
Sbjct: 694 DILSRNIGE-DLDSSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAG-SPVLVKKN 751

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC  CH  +K  S   GR I++ D+  +H F  G+C C D W
Sbjct: 752 VRVCNHCHHALKLISKYSGRKIVVGDTKIYHIFSDGSCCCGDYW 795



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 203/452 (44%), Gaps = 40/452 (8%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           +L+ +H  +G + +    F  +    +  +N  I GFA+     +AL  +  M      P
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARP 118

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +T    L  CA+   L  G+  H  ++   LG +V+  N+L  +YAK G +  A  +F
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGAC------ 267
           D M  R++VSWN M+ GY+ NG     +  F+EM   L +  D V V   L AC      
Sbjct: 179 DGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESAL 238

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G +  A  +F  +  +  V W  MI GY
Sbjct: 239 ALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGY 298

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             N +  DA   F +M  +  + +  +  +++++CA+  S   G+ VH   V       +
Sbjct: 299 ALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPHV 358

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           ++ +AL++MY K G  + +  +F  +  + +VSWN+MI  Y       EA+AL+ +LL +
Sbjct: 359 VLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQ 418

Query: 419 NLKPDSFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            L PD FT  +V+ A  L   + +  Q H   +   +G +  + +   ++++  R  ++ 
Sbjct: 419 PLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMN--AVMHMYARCGNIV 476

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
            + ++   +P K + + W+T++   A+ G  K
Sbjct: 477 ASREIFDKMPGK-DVISWNTIIIGYAIHGQGK 507



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 66/305 (21%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K G +F+A ++F KMPLR +++WN ++  +A            ++ P+      
Sbjct: 263 LVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYA-----------LNERPV------ 305

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                         +A   F +M+ D F+    T ++ L ACAQ      G+ +H  +V 
Sbjct: 306 --------------DAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVR 351

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
            +   +V +  AL +MY K G+++ +  +F ++ ++ LVSWN MI+ Y+     ++ I L
Sbjct: 352 RHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIAL 411

Query: 245 FQEMQLLGLNPDEVTVSNILGA---------CFQ-------------------------- 269
           F E+    L PD  T++ ++ A         C Q                          
Sbjct: 412 FLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYAR 471

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G I  +  +F  +  KD + W T+I+GY  +G+ + AL +F+EM    + P++ +  SV
Sbjct: 472 CGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSV 531

Query: 330 VSSCA 334
           +++C+
Sbjct: 532 LTACS 536



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 119/249 (47%), Gaps = 8/249 (3%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G  P  + +S++       GR+D+A   F  +          MI G+       DAL  +
Sbjct: 54  GSRPKSLILSHV-----AAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAY 108

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML    RPD+F+   V+  CA+  +L  G+  H   + LG+  D+  +++L+ +Y K 
Sbjct: 109 RAMLDAGARPDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKL 168

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSV 430
           G+  DA  VF+ MP R++VSWN+M++GY  NG    ALA + ++     +  DS   ++ 
Sbjct: 169 GLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAA 228

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           L+AC        G+      +  HG+   +     ++++  +  +V  A ++   +P + 
Sbjct: 229 LAACCLESALALGR-EIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLR- 286

Query: 491 NSLIWSTLL 499
             + W+ ++
Sbjct: 287 TVVTWNCMI 295



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 108/200 (54%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L  ++   ALL  + + G V+    +F ++  +  VS+N  IA +      +EA+ +F  
Sbjct: 355 LPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLE 414

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           +      P  +T  + + A   L  +R+ KQ+H  IV    G +  + NA+  MYA+ G 
Sbjct: 415 LLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGN 474

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           I  +R +FD+M  ++++SWN +I GY  +GQ K  +++F EM+  G+ P+E T  ++L A
Sbjct: 475 IVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTA 534

Query: 267 CFQTGRIDDAGRLFHVIKEK 286
           C  +G   +  + F+ ++++
Sbjct: 535 CSVSGLEAEGWKEFNSMQQE 554



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 38/234 (16%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++T + N ++H YA+ G +  +R++FDKMP +D+ISWN                      
Sbjct: 457 DSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWN---------------------- 494

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA-QLLDLRRG 175
                    T I G+A  G  + AL++F  M+    EP + T VS L AC+   L+    
Sbjct: 495 ---------TIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGW 545

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K+ +       +   +     +TD+  + GE+   R +   + N  +   + +    L  
Sbjct: 546 KEFNSMQQEYGMIPQIEHYGCMTDLLGRAGEL---REVLRFIENMPIAPTSRIWGSLLTA 602

Query: 236 GQPKKCIDL--FQEMQLLGLNPDEVTVSNILGACF-QTGRIDDAGRLFHVIKEK 286
            + K  ID+  +   ++  L  +      +L + +   GR +D  R+  ++KEK
Sbjct: 603 SRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEK 656


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/688 (34%), Positives = 369/688 (53%), Gaps = 65/688 (9%)

Query: 57  NTTFLHNRLLHFYAKSGKL---FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  ++LL F   S       YA  +FD +   +++ WN +   HA S        L+
Sbjct: 18  NTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLY 77

Query: 114 DKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ- 168
             M     + DS ++   +   A     +E  Q+   + K  F+   Y H S ++  AQ 
Sbjct: 78  LVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQN 137

Query: 169 --LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWN 226
             L D R+   I           +V    AL   Y   G I+ A+ LFD +  +++VSWN
Sbjct: 138 GRLEDARKVFDISSH-------RDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWN 190

Query: 227 LMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQT--------------- 270
            MISGY++ G  K+ ++LF+EM ++  + PDE T+  ++ AC Q+               
Sbjct: 191 AMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWIND 250

Query: 271 --------------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                               G ++ A  LF  +  KD + W T+I GYT     ++AL+L
Sbjct: 251 HGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLL 310

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG------KAVVLGVDDDLLVSSAL 364
           F EML     P+  ++ S++ +CA L ++  G+ +H       K VV  V     + ++L
Sbjct: 311 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS---LQTSL 367

Query: 365 IDMYCKCGVTDDAWTVFNM-MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           IDMY KCG  D A  VF+  M  R++ +WN+MI+G+A +G+   A  ++ ++    ++PD
Sbjct: 368 IDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPD 427

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TFV +LSAC H+ + + G+N F S++  + ITP L+HY CMI+LLG S    +A ++I
Sbjct: 428 DITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMI 487

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
            ++P +P+ +IW +LL  C + G+++ GE  A+ L ++EP N+G Y++LSN+YAA GRW 
Sbjct: 488 NTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWN 547

Query: 544 DVASIRSSMKSKNV-KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
           +VA IR+ +  K + KK    S IEID+ VH+F+  D+ HP+   IY  L ++   L+EA
Sbjct: 548 EVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEA 607

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           GF P+T  VL + +EE +  ++ +HSEKLA+A+ LI    G T + IMKN+RVC +CH  
Sbjct: 608 GFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPG-TKLTIMKNLRVCKNCHEA 666

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNC 690
            K  S I  R II RD  RF HF  G C
Sbjct: 667 TKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 138/288 (47%), Gaps = 37/288 (12%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S +L  C  +   D    A  +F  I+E + + W TM  G+  +  
Sbjct: 10  QMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSD 69

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL L+  M+S  + PD ++   ++ SCAK      GQ +HG  + LG D D+ V ++
Sbjct: 70  PVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTS 129

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS----------------------------- 394
           LI MY + G  +DA  VF++   R+VVS+ +                             
Sbjct: 130 LISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSW 189

Query: 395 --MINGYAQNGQDLEALALY-DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
             MI+GY + G   EAL L+ + ++  N++PD  T V+V+SAC  +D  E G+ H  S  
Sbjct: 190 NAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGR-HVHSWI 248

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             HG   +L     +I+L  +  +V+ A +L   L +K + + W+TL+
Sbjct: 249 NDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNK-DVISWNTLI 295



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 36/162 (22%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMD--LNFYEPNTTFLHNRLLHFYAKSGKL 75
           G+   +     ++  C  +  +++ + +  +++  L     N + L   L+  YAK G +
Sbjct: 318 GETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDI 377

Query: 76  FYARDLFD-KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134
             A+ +FD  M  R + +WNA++S                               GFA  
Sbjct: 378 DAAQQVFDSSMSNRSLSTWNAMIS-------------------------------GFAMH 406

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ--LLDLRR 174
           G +  A  +FSRM+ +  EP D T V  L+AC+   +LDL R
Sbjct: 407 GRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGR 448


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/647 (34%), Positives = 340/647 (52%), Gaps = 80/647 (12%)

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA----LNACAQLLDLRRGK 176
           SV   TAIA   +KG  REA Q        RF    +T+ S     + +C     L  GK
Sbjct: 13  SVDPATAIATLCSKGNLREAFQ--------RFRLNIFTNTSLFTPFIQSCTTRQSLPSGK 64

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAK-------------------------------GG 205
           Q+H  +VV     + F+ N L  MY+K                                G
Sbjct: 65  QLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAG 124

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           ++  AR +FD M +R L +WN MI+G ++    ++ + LF+EM  LG +PDE T+ ++  
Sbjct: 125 DLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFS 184

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
                                                 + G++ D   +   +  ++ V 
Sbjct: 185 GSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVA 244

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W T+I+G  QNG  E  L L+  M     RP+K +  +V+SSC+ LA    GQ +H +A+
Sbjct: 245 WNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI 304

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
            +G    + V S+LI MY KCG   DA   F+     + V W+SMI+ Y  +GQ  EA+ 
Sbjct: 305 KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIE 364

Query: 411 LYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
           L++ +  Q N++ +   F+++L AC H+ L ++G   FD +   +G  P L HY C+++L
Sbjct: 365 LFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDL 424

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  +D+A  +I+S+P K + +IW TLLS C +  + +  +   + + +++P ++  Y
Sbjct: 425 LGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACY 484

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++L+N++A+  RW DV+ +R SM+ KNVKK A  SW E   +VH+F   DR+  +++ IY
Sbjct: 485 VLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIY 544

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
             L +L  +++  G+ P+T  VLHD  EEEK   +  HSEKLA+A+ L+  P G  PIRI
Sbjct: 545 SYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEG-APIRI 603

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +KN+RVC DCH+  K+ S I  R I LRD +RFHHF+ G CSC D W
Sbjct: 604 IKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 213/451 (47%), Gaps = 44/451 (9%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +T  +  CT    +   K+L   + ++ +  +  F+ N L+  Y+K G    A  ++ +M
Sbjct: 47  FTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDK-FICNHLMSMYSKLGDFPSAVAVYGRM 105

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
             ++ +S N L++ + R+G + + R +FD+MP R   ++N  IAG     F+ E L +F 
Sbjct: 106 RKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFR 165

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M    F P +YT  S  +  A L  +  G+QIHG  +   L  ++ V ++L  MY + G
Sbjct: 166 EMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNG 225

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           ++     +   M  RNLV+WN +I G  +NG P+  + L++ M++ G  P+++T   +L 
Sbjct: 226 KLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLS 285

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           +C                                    + G + DA + F   +++D V 
Sbjct: 286 SCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVM 345

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
           W++MI  Y  +G+ ++A+ LFN M  + ++  ++ +  +++ +C+       G  +    
Sbjct: 346 WSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM 405

Query: 350 V-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLE 407
           V   G    L   + ++D+  + G  D A  +   MP + ++V W ++++    +     
Sbjct: 406 VEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEM 465

Query: 408 ALALYDKLLQENLKP-DSFTFVSVLSACLHA 437
           A  ++ ++LQ  + P DS  +  VL A +HA
Sbjct: 466 AQRVFKEILQ--IDPNDSACY--VLLANVHA 492


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/669 (32%), Positives = 361/669 (53%), Gaps = 46/669 (6%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           ++GK  +A  + D +     +S N+L S +A  G + + R +FD     D VS+N+ ++G
Sbjct: 120 RTGKAVHAMTVLDGLGNGVFLS-NSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSG 178

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR--GKQIHGKIVVGNLG 188
           +   G   E L+VFS M         +   S +  CA   D+ R   + +HG +V   L 
Sbjct: 179 YVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLD 238

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP------KKCI 242
            ++F+ +A+ DMYAK G +  A  LF  + + N++ +N MI+G+ ++         ++ +
Sbjct: 239 ADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREAL 298

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            L+ EMQ  G+ P E T S+IL AC                                   
Sbjct: 299 SLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLY 358

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
             +G ++D  R F  + ++D V WT+MI G  QN   E AL LF E +   ++PD F++S
Sbjct: 359 SDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMS 418

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+++CA LA    G+ +   A+  G +    + ++ I M  + G  D     F  M +R
Sbjct: 419 SVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESR 478

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSW+++I+ +AQ+G   +AL ++++++   + P+  TF++VL+AC H  L + G  ++
Sbjct: 479 DVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHGGLVDDGLRYY 538

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           + +   +G++P++ H  C+++LLGR+  +  A   I+      ++++W +LL+ C + GD
Sbjct: 539 EIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRSLLASCRIHGD 598

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           ++ G++ A  + +LEP ++  Y++L NMY   G     +  R  MK + VKK    SWIE
Sbjct: 599 MERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGVKKEPGLSWIE 658

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYH 627
           + + VH FV+ D++HPE+  IY++L++++ K+++   + N           E+    C H
Sbjct: 659 LRSGVHSFVAGDKSHPESNAIYKKLAEMLSKIEKLANTDNASTGSDGISSSEQNLVGC-H 717

Query: 628 SEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVG 687
           SEK+A+A+ +I  P    PIR+MKN+RVC DCH  MK  S    R IILRD  RFHHF G
Sbjct: 718 SEKIAVAFGMIHLPQS-APIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHHFRG 776

Query: 688 GNCSCKDNW 696
           G+CSC D W
Sbjct: 777 GSCSCGDYW 785



 Score =  205 bits (521), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 139/472 (29%), Positives = 232/472 (49%), Gaps = 58/472 (12%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRA--LFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           P   +   N+LL+A+ R G    L A  L D+MP R++VSYN  I+ ++  G    AL+ 
Sbjct: 30  PTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRAGLPGRALET 89

Query: 144 FSR------MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           F+R      ++ DRF     T+ +AL AC++ LDLR GK +H   V+  LG  VF+ N+L
Sbjct: 90  FARARAAAGLRVDRF-----TYAAALAACSRALDLRTGKAVHAMTVLDGLGNGVFLSNSL 144

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
             MYA  GE+ +AR +FD     + VSWN ++SGY++ G  ++ + +F  M   GL  + 
Sbjct: 145 ASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHGLGWNS 204

Query: 258 VTVSNILGAC-------------------------------------FQTGRIDDAGRLF 280
             + +I+  C                                      + G + +A  LF
Sbjct: 205 FALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGALTNAVALF 264

Query: 281 HVIKEKDNVCWTTMIVGYTQN----GKE--EDALILFNEMLSEDVRPDKFSISSVVSSCA 334
             + + + + +  MI G+ ++    GKE   +AL L++EM S  ++P +F+ SS++ +C 
Sbjct: 265 KSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFSSILRACN 324

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
                  G+ +HG+ +     DD  + SALID+Y   G  +D +  F  +P +++V+W S
Sbjct: 325 LAGEFGFGKQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTS 384

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI+G  QN    +AL L+ + +   LKPD FT  SV++AC    +   G+     ++  +
Sbjct: 385 MISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGE-QIQCLAIKY 443

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           G           I++  RS DVD      + +  + + + WS ++S  A  G
Sbjct: 444 GFNRFTAMGNSFIHMCARSGDVDAVTRRFQEMESR-DVVSWSAVISSHAQHG 494



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
           T + N  +H  A+SG +      F +M  RD++SW+A++S+HA+ G  +D   +F++M  
Sbjct: 449 TAMGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMN 508

Query: 117 --PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                + V++   +   ++ G   + L+ +  M+ +        HV+ +
Sbjct: 509 AKVAPNEVTFLNVLTACSHGGLVDDGLRYYEIMKNEYGLSPTIKHVTCV 557


>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 754

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/644 (32%), Positives = 355/644 (55%), Gaps = 48/644 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT 155
           L++ +A+ G+++D R +F+ MP R+ V++ T + GF      + A+ VF  M      P+
Sbjct: 105 LVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPS 164

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            YT  + L+AC+ L  L+ G Q H  I+  +L  +  V +AL  +Y+K G ++ A   F 
Sbjct: 165 IYTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFS 224

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------- 267
           R+  +N++SW   +S    NG P K + LF EM    + P+E T+++ L  C        
Sbjct: 225 RIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIKPNEFTLTSALSQCCEIPSLEL 284

Query: 268 ---------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       ++G I +A R F+ + +   V W  MI G+ Q
Sbjct: 285 GTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQ 344

Query: 301 N-----------GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
                        +  +AL +F+++    ++PD F++SSV+S C+++ ++  G+ +H + 
Sbjct: 345 MMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQT 404

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +  G   D++VS++LI MY KCG  + A   F  M TR +++W SMI G++Q+G   +AL
Sbjct: 405 IKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQAL 464

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            +++ +    ++P++ TFV VLSAC HA +  +  N+F+ +   + I P +DHY CM+++
Sbjct: 465 HIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDM 524

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
             R   +++A++ IK + ++P+  IWS  ++ C   G+++ G  A+  L  L+P +   Y
Sbjct: 525 FVRLGRLEQALNFIKKMNYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDPETY 584

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++L NMY +  R++DV+ +R  M+ + V K   +SWI I +KV+ F + D+THP + +I 
Sbjct: 585 VLLLNMYLSADRFDDVSRVRKMMEVEKVGKLKDWSWISIKDKVYSFKTNDKTHPPSSLIC 644

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS-ICYHSEKLALAYCLIKKPHGVTPIR 648
           + L  L+ K +  G+     + + D +EEEK  S   YHSEKLA+ + L   P+  +PIR
Sbjct: 645 KSLEDLLAKAKNLGYEMLESVEISDEEEEEKTSSPTIYHSEKLAITFGLENLPNS-SPIR 703

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           ++K+  +C D H F+K  S + GR II++DS R H FV G CSC
Sbjct: 704 VVKSTLICRDSHNFIKCVSTLTGREIIVKDSKRLHKFVNGECSC 747



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/404 (30%), Positives = 199/404 (49%), Gaps = 59/404 (14%)

Query: 168 QLLDLRR--GKQI-HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           Q LD R   G QI HG ++      N FV + L ++YAK G ++ AR +F+ M  RN+V+
Sbjct: 73  QCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVA 132

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----------------- 267
           W  ++ G+++N QPK  I +FQEM   G  P   T+S +L AC                 
Sbjct: 133 WTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIYTLSAVLHACSSLQSLKLGDQFHAYII 192

Query: 268 -----FQT-------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALI 309
                F T             GR++DA + F  I+EK+ + WT+ +     NG     L 
Sbjct: 193 KYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLR 252

Query: 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
           LF EM+SED++P++F+++S +S C ++ SL  G  V    +  G + +L V ++L+ +Y 
Sbjct: 253 LFVEMISEDIKPNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYL 312

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN-----------GQDLEALALYDKLLQE 418
           K G   +A   FN M   ++V+WN+MI G+AQ             +  EAL ++ KL Q 
Sbjct: 313 KSGFIVEAHRFFNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQS 372

Query: 419 NLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            +KPD FT  SVLS C      E+G Q H  +I    G    +     +I++  +   ++
Sbjct: 373 GMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKT--GFLSDVIVSTSLISMYNKCGSIE 430

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG-EMAARHLFE 520
           +A      +  +   + W+++++     G  +HG    A H+FE
Sbjct: 431 RASKAFLEMSTR-TMIAWTSMIT-----GFSQHGMSQQALHIFE 468



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 177/372 (47%), Gaps = 30/372 (8%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           E   T  +  C  +  +EL  ++ S      YE N   + N LL+ Y KSG +  A   F
Sbjct: 266 EFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLR-VRNSLLYLYLKSGFIVEAHRFF 324

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           ++M    +++WNA+++ HA+   +            +D++S          +G   EAL+
Sbjct: 325 NRMDDVSMVTWNAMIAGHAQMMEL-----------TKDNLSA-------CQRG--SEALK 364

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +FS++ +   +P  +T  S L+ C+++L + +G+QIH + +      +V V  +L  MY 
Sbjct: 365 IFSKLNQSGMKPDLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYN 424

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
           K G I++A   F  M+ R +++W  MI+G+ ++G  ++ + +F++M L G+ P+ VT   
Sbjct: 425 KCGSIERASKAFLEMSTRTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVG 484

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSE 317
           +L AC   G +  A   F ++++K  +      +  M+  + + G+ E AL    +M   
Sbjct: 485 VLSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKM--- 541

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           +  P +F  S+ ++ C    +L  G     + + L   D       L++MY      DD 
Sbjct: 542 NYEPSEFIWSNFIAGCRSHGNLELGFYASEQLLSLKPKDP-ETYVLLLNMYLSADRFDDV 600

Query: 378 WTVFNMMPTRNV 389
             V  MM    V
Sbjct: 601 SRVRKMMEVEKV 612



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 189/402 (47%), Gaps = 61/402 (15%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL S +++ G ++D    F ++  ++ +S+ +A++   + G   + L++F  M  +  +
Sbjct: 204 SALCSLYSKCGRLEDALKAFSRIREKNVISWTSAVSACGDNGAPVKGLRLFVEMISEDIK 263

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P ++T  SAL+ C ++  L  G Q+    +      N+ VRN+L  +Y K G I +A   
Sbjct: 264 PNEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRF 323

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKK-----------CIDLFQEMQLLGLNPDEVTVSN 262
           F+RM++ ++V+WN MI+G+ +  +  K            + +F ++   G+ PD  T+S+
Sbjct: 324 FNRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQSGMKPDLFTLSS 383

Query: 263 ILGACF-----------------------------------QTGRIDDAGRLFHVIKEKD 287
           +L  C                                    + G I+ A + F  +  + 
Sbjct: 384 VLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAFLEMSTRT 443

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA----SLYHGQ 343
            + WT+MI G++Q+G  + AL +F +M    VRP+  +   V+S+C+       +L + +
Sbjct: 444 MIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALNYFE 503

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYA 400
           ++  K  +  V D       ++DM+ + G  + A      M   P+  +  W++ I G  
Sbjct: 504 IMQKKYKIKPVMDHY---ECMVDMFVRLGRLEQALNFIKKMNYEPSEFI--WSNFIAGCR 558

Query: 401 QNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFE 441
            +G +LE L  Y      +LKP D  T+V +L+  L AD F+
Sbjct: 559 SHG-NLE-LGFYASEQLLSLKPKDPETYVLLLNMYLSADRFD 598



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365
           +AL+L  E   E+   +K     ++  C    S    Q+VHG  +  G  D+  V S L+
Sbjct: 50  EALLLNKEGTEEE---EKLFYVPLLQQCLDKRSYSGTQIVHGHVMKTGCHDNFFVMSFLV 106

Query: 366 DMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           ++Y KCG  +DA  VF  MP RNVV+W +++ G+ QN Q   A+ ++ ++L     P  +
Sbjct: 107 NVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFVQNSQPKHAIHVFQEMLYAGSYPSIY 166

Query: 426 TFVSVLSACLHADLFERGQNHFDSISAVH-GITPSLDHYAC-MINLLGRSSDVDKAVDLI 483
           T  +VL AC      + G      I   H     S+    C + +  GR  D  KA   I
Sbjct: 167 TLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSRI 226

Query: 484 KSLPHKPNSLIWSTLLSVCAMKG 506
           +    + N + W++ +S C   G
Sbjct: 227 R----EKNVISWTSAVSACGDNG 245


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/632 (35%), Positives = 326/632 (51%), Gaps = 95/632 (15%)

Query: 6   KLRQAIDTL---YSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           +LR+A+  L      G       Y  L+  C     +  AK L +HM    +E     L 
Sbjct: 44  RLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLG 103

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N+L+  Y K G L  AR +FD+MP+++++SW A+++A+AR    Q               
Sbjct: 104 NKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQ--------------- 148

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                           EAL  F  MQ    +P  +T  S L AC    DL    + H +I
Sbjct: 149 ----------------EALGFFYEMQDVGIQPNHFTFASILPACT---DLEVLGEFHDEI 189

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           V G    NVFV N L DMYAK G I+ AR LFD+M  R++VSWN MI+GY++NG  +  +
Sbjct: 190 VKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDAL 249

Query: 243 DLFQEM-------------------------QLLGLNPDEVTVS--NILGACFQTGRIDD 275
            LFQE+                         +L    P++  VS   ++    Q G + +
Sbjct: 250 KLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKE 309

Query: 276 AGRLFHVIKEK-------------------------------DNVCWTTMIVGYTQNGKE 304
           A +LF ++ E+                               + V W  MI GY+QNG+ 
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E+AL LF +M   D++P+  + + V+ +CA LA L  G   H   +  G   D+LV + L
Sbjct: 370 ENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTL 429

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424
           + MY KCG  +DA  VF+ M  ++  S ++MI GYA NG   E+L L++++    LKPD 
Sbjct: 430 VGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDR 489

Query: 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484
            TFV VLSAC HA L + G+ +FD ++  + ITP+++HY CMI+LLGR+   D+A DLI 
Sbjct: 490 VTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLIN 549

Query: 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544
            +P KP++ +W +LLS C    +I  GE  A+HL  L P N  PY++LSN+YAA GRW+D
Sbjct: 550 KMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDD 609

Query: 545 VASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
           + S+R+ MK + VKK    SWI I  +VH F+
Sbjct: 610 IGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFL 641



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 176/399 (44%), Gaps = 69/399 (17%)

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------- 268
           ++    K G+ ++ + + Q+M   G+ P   T  ++L  C                    
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 269 -----------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
                            + G + +A R+F  +  K+ V WT MI  Y ++   ++AL  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASL--YHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369
            EM    ++P+ F+ +S++ +C  L  L  +H ++V G     G + ++ V + L+DMY 
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKG-----GFESNVFVGNGLVDMYA 209

Query: 370 KCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429
           K G  + A  +F+ MP R+VVSWN+MI GY QNG   +AL    KL QE  K D  T+ +
Sbjct: 210 KRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDAL----KLFQEIPKRDVITWNT 265

Query: 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489
           +++        E     F+ +        +L  +  MI    ++  V +A  L + +P +
Sbjct: 266 MMAGYAQCGDVENAVELFEKMP-----EQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPER 320

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASI 548
            N + W+ ++S  A  G ++     A  LF+  P  N   +  +   Y+  G+ E+   +
Sbjct: 321 -NVISWNAVISGFAQNGQVEE----ALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKL 375

Query: 549 RSSMK----SKNVKKF-------AAYSWIEIDNKVHKFV 576
              M+      N + F       AA + +E  N+ H+ V
Sbjct: 376 FGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVV 414


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/659 (32%), Positives = 355/659 (53%), Gaps = 54/659 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALF----DKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           R+     AL+ ++ + GS+ D   +F    D+ P    V+ +  I+     G+ +E+L++
Sbjct: 281 REAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRL 340

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI---HGKIVVGNLGGNVFVRNALTDM 200
           F  M  +  +P+  T VS LNAC+ +L +             VV     NV     LT  
Sbjct: 341 FFAMNLEGTKPSGVTLVSVLNACS-MLQVGSATAFVLEQAMEVVSATRDNVLGTTLLT-T 398

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           YA+  ++ +AR  FD + + ++VSWN M + YL++ + ++ + LF+ M L G+ P   T 
Sbjct: 399 YARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATF 458

Query: 261 SNILGACF--------------------------------------QTGRIDDAGRLFHV 282
              L AC                                       + G + DA  +F  
Sbjct: 459 ITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFER 518

Query: 283 IK--EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASL 339
           I    +D + W +M+  Y  +G  ++A  LF  M +E  V+P+K +  +V+ +     S+
Sbjct: 519 ISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSI 578

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMIN 397
             G+ +H + V  G + D ++ +AL++MY KCG  DDA  +F+   +   +V++W S+I 
Sbjct: 579 AQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIA 638

Query: 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           GYAQ GQ   AL L+  + Q+ ++P+  TF+S L+AC H    E+G      ++  HGI 
Sbjct: 639 GYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGIL 698

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P+  H++C+++LLGR   +D+A  L++    + + + W  LL  C    +++ GE  A  
Sbjct: 699 PASKHFSCIVDLLGRCGRLDEAEKLLER-TSQADVITWMALLDACKNSKELERGERCAER 757

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           + +L+P  A  YI+L++MYAA GRW + A+IR +M  K ++     S +E++ ++H F +
Sbjct: 758 IMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSA 817

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL 637
            D++HP++E IY EL +L   ++ AG+  +T LVLHD  +E K + +  HSEKLA+A+ L
Sbjct: 818 GDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGL 877

Query: 638 IKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +  P G +P+R++KN+RVC DCH   K  S + GR I++RDS+R+HHF  G CSC D W
Sbjct: 878 MSTPSG-SPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 167/594 (28%), Positives = 267/594 (44%), Gaps = 111/594 (18%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A   LV  C+ + ++   +R+ S +    +E N+  L N L+  Y+K G L  A+  FD+
Sbjct: 143 ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSV-LGNALISMYSKCGSLIDAKQAFDR 201

Query: 85  MPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           +P    RD+++WNA++SA  R+GS                               +REAL
Sbjct: 202 LPRASKRDVVTWNAMISAFLRNGS-------------------------------AREAL 230

Query: 142 QVFSRMQKDRFEPTD-YTHVSALNAC--AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           Q+F  M +D   P +  T VS L++C  A LL L   + IHG+IV   +    FVR AL 
Sbjct: 231 QLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALV 290

Query: 199 DMYAKGGEIDKARWLF----DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           D Y K G +D A  +F    D   + +LV+ + MIS   +NG P++ + LF  M L G  
Sbjct: 291 DSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTK 350

Query: 255 PDEVTVSNILGAC--FQTG-------------------------------RIDDAGR--- 278
           P  VT+ ++L AC   Q G                               R +D  R   
Sbjct: 351 PSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARA 410

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA---- 334
            F  I+  D V W  M   Y Q+ +  +AL+LF  ML E VRP   +  + +++CA    
Sbjct: 411 TFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPP 470

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSW 392
           + AS   G+ +       G++ D  V++A ++MY KCG   DA  VF  +    R+ ++W
Sbjct: 471 QTASAI-GKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITW 529

Query: 393 NSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQ------- 444
           NSM+  Y  +G   EA  L+  +  E L KP+  TFV+VL A        +G+       
Sbjct: 530 NSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVV 589

Query: 445 -NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVC 502
            N F+S + +            ++N+  +   +D A  +  KS  ++ + + W++L++  
Sbjct: 590 SNGFESDTVIQN---------ALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGY 640

Query: 503 AMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC---GRWEDVASIRSSM 552
           A  G     E A +  + ++     P ++   +   AC   G+ E    + S M
Sbjct: 641 AQYG---QAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGM 691



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 194/401 (48%), Gaps = 53/401 (13%)

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG--NLGGNVFVRNALTDMYA 202
           SR+  D+      T+   L AC +L  L++G+++H  I+    +L  + F+ + L  M+A
Sbjct: 32  SRIIADQGHCAPSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHA 91

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL------------ 250
           K G + +A  L DR    ++ S   MI  ++++G+P K ++LF  M++            
Sbjct: 92  KCGNLAEAEALADRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRMEVRPNCHALIALVN 149

Query: 251 ----LG-----------LNPDEVTVSNILGACF-----QTGRIDDAGRLFHVI---KEKD 287
               LG           ++  +   +++LG        + G + DA + F  +    ++D
Sbjct: 150 ACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRD 209

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-RPDKFSISSVVSSC--AKLASLYHGQV 344
            V W  MI  + +NG   +AL LF +M  +    P+  +  SV+ SC  A L SL   + 
Sbjct: 210 VVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRA 269

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF----NMMPTRNVVSWNSMINGYA 400
           +HG+ V  G++ +  V +AL+D Y K G  DDAW VF    +  P+ ++V+ ++MI+   
Sbjct: 270 IHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACW 329

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-NHFDSISAVHGITPS 459
           QNG   E+L L+  +  E  KP   T VSVL+AC    + + G    F    A+  ++ +
Sbjct: 330 QNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNAC---SMLQVGSATAFVLEQAMEVVSAT 386

Query: 460 LDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
            D+     ++    RS+D+ +A     ++   P+ + W+ +
Sbjct: 387 RDNVLGTTLLTTYARSNDLPRARATFDAI-QSPDVVSWNAM 426



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 119/268 (44%), Gaps = 51/268 (19%)

Query: 30  VLDC-TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP-- 86
           VLD  T    +   + + + +  N +E +T  + N LL+ YAK G L  A+ +FDK    
Sbjct: 568 VLDASTSRTSIAQGREIHARVVSNGFESDTV-IQNALLNMYAKCGSLDDAQAIFDKSSSN 626

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
             D+I+W +L                               IAG+A  G +  AL++F  
Sbjct: 627 QEDVIAWTSL-------------------------------IAGYAQYGQAERALKLFWT 655

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV--GNLGGNVFVRNALTDMYAKG 204
           MQ+    P   T +SAL AC     L +G ++   +    G L  +    + + D+  + 
Sbjct: 656 MQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHF-SCIVDLLGRC 714

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMI-----SGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
           G +D+A  L +R +  ++++W  ++     S  L+ G+  +C +     +++ L+P+  +
Sbjct: 715 GRLDEAEKLLERTSQADVITWMALLDACKNSKELERGE--RCAE-----RIMQLDPEVAS 767

Query: 260 VSNILGACF-QTGRIDDAGRLFHVIKEK 286
              +L + +   GR ++A  +   + +K
Sbjct: 768 SYIVLASMYAAAGRWNEAATIRKTMLDK 795


>gi|302795364|ref|XP_002979445.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
 gi|300152693|gb|EFJ19334.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
          Length = 637

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/585 (34%), Positives = 326/585 (55%), Gaps = 42/585 (7%)

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +P   T+ S L  CA    L  G+ +H +I      G  F+ N L  MY   G++D+A+ 
Sbjct: 54  KPDLETYASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKK 113

Query: 213 LFDRMNNRN-LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT------------ 259
            FDR+++RN  VSWN MI+GY +N   K+ + LF+ M L G  P++VT            
Sbjct: 114 AFDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSALDAAGNLG 173

Query: 260 --------------------------VSNILGAC--FQTGRIDDAGRLFHVIKEKDNVCW 291
                                     + N  G C   Q+G       +F  ++++D+V W
Sbjct: 174 ALPEGSAIHEEVLEHDCETDTAVATALINFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSW 233

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           +T++  Y Q+ +   ++ LF +M  E  +P +F+  SVV +C KL++L  G+V+H   + 
Sbjct: 234 STLVGAYAQSNQHRTSMELFKKMDVEGYKPTRFTFMSVVDACGKLSALREGRVLHSSIMN 293

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
             +  D+++ + +++M+ +CG  +++ + F  M  R+ VSW+ MI+ +A NG   EAL  
Sbjct: 294 SALKWDVVLQNGIVNMFGRCGSVEESSSAFQEMLQRDAVSWSIMISAFAHNGHGAEALET 353

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  +  +   PD  TFVS+LS C HA L    + H   +   + + P LDHY C+++LL 
Sbjct: 354 FLAMNLDGQTPDELTFVSILSVCAHAGLLRDARGHLVDMVGDYALVPGLDHYVCLVDLLC 413

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           RS  +  A +L++++P++P+   W TLL+ C M+GD+K G    +     +P  + PY +
Sbjct: 414 RSGRLGAAEELVETMPYEPHGSAWLTLLAACKMQGDLKRGARVGKSFLATDPDTSAPYAL 473

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LS++YA   R  ++  +R +M+ + +KK A  S+IE+ ++VH+F + + +HP    I  E
Sbjct: 474 LSSIYAEAKRVNEMRIVRKAMEERGIKKQAGCSYIEVHDRVHEFKAGEVSHPRHRDILYE 533

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMK 651
           L ++ +K+ EAG   +T+LV +D +EEEK   + YHSEKLA+   L+    G T +R++K
Sbjct: 534 LMQIQRKMVEAGCVRDTRLVSYDLEEEEKENLLTYHSEKLAIGLGLVTTRPG-TELRVVK 592

Query: 652 NIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           N+RVC DCH  +KF S I GR I++RD NRFHHF  G CSC D W
Sbjct: 593 NLRVCSDCHTAIKFISRICGRRIVVRDCNRFHHFEDGVCSCNDYW 637



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 174/407 (42%), Gaps = 80/407 (19%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E Y  L+  C     ++L + L   +    ++   TFL N L+  Y   G +  A+  FD
Sbjct: 58  ETYASLLRQCASARALDLGQLLHEEIARRRFD-GYTFLGNTLITMYGSCGDVDRAKKAFD 116

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           ++  R+                              ++VS+N+ IAG+A   FS+EAL++
Sbjct: 117 RIDSRN------------------------------NTVSWNSMIAGYAQNAFSKEALKL 146

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M    F+P   T VSAL+A   L  L  G  IH +++  +   +  V  AL + + K
Sbjct: 147 FKAMDLQGFQPNKVTFVSALDAAGNLGALPEGSAIHEEVLEHDCETDTAVATALINFFGK 206

Query: 204 -----GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
                 G+  + + +FDRM +R+ VSW+ ++  Y ++ Q +  ++LF++M + G  P   
Sbjct: 207 CPYCQSGDPHQVQAIFDRMRDRDDVSWSTLVGAYAQSNQHRTSMELFKKMDVEGYKPTRF 266

Query: 259 TVSNILGACFQ-----------------------------------TGRIDDAGRLFHVI 283
           T  +++ AC +                                    G ++++   F  +
Sbjct: 267 TFMSVVDACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESSSAFQEM 326

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            ++D V W+ MI  +  NG   +AL  F  M  +   PD+ +  S++S CA    L   +
Sbjct: 327 LQRDAVSWSIMISAFAHNGHGAEALETFLAMNLDGQTPDELTFVSILSVCAHAGLLRDAR 386

Query: 344 -----VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
                +V   A+V G+D  +     L+D+ C+ G    A  +   MP
Sbjct: 387 GHLVDMVGDYALVPGLDHYV----CLVDLLCRSGRLGAAEELVETMP 429



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 175/367 (47%), Gaps = 29/367 (7%)

Query: 42  AKRLQSHMDLNFYEPN-TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSA- 99
           A +L   MDL  ++PN  TF+    L      G L     + +++   D  +  A+ +A 
Sbjct: 143 ALKLFKAMDLQGFQPNKVTFVSA--LDAAGNLGALPEGSAIHEEVLEHDCETDTAVATAL 200

Query: 100 --------HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
                   + +SG    ++A+FD+M  RD VS++T +  +A     R ++++F +M  + 
Sbjct: 201 INFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSWSTLVGAYAQSNQHRTSMELFKKMDVEG 260

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
           ++PT +T +S ++AC +L  LR G+ +H  I+   L  +V ++N + +M+ + G ++++ 
Sbjct: 261 YKPTRFTFMSVVDACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESS 320

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
             F  M  R+ VSW++MIS +  NG   + ++ F  M L G  PDE+T  +IL  C   G
Sbjct: 321 SAFQEMLQRDAVSWSIMISAFAHNGHGAEALETFLAMNLDGQTPDELTFVSILSVCAHAG 380

Query: 272 RIDDA-GRLFHVIKE-------KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
            + DA G L  ++ +          VC   ++    + G  E+   L   M  E   P  
Sbjct: 381 LLRDARGHLVDMVGDYALVPGLDHYVCLVDLLCRSGRLGAAEE---LVETMPYE---PHG 434

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTDDAWTVFN 382
            +  +++++C     L  G  V GK+  L  D D     AL+  +Y +    ++   V  
Sbjct: 435 SAWLTLLAACKMQGDLKRGARV-GKS-FLATDPDTSAPYALLSSIYAEAKRVNEMRIVRK 492

Query: 383 MMPTRNV 389
            M  R +
Sbjct: 493 AMEERGI 499


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 316/577 (54%), Gaps = 39/577 (6%)

Query: 123 SYNTAIAGFANKGFSREALQVFSRM---QKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           + N+ I  ++      ++   ++ +     +   P +YT    +  CAQL     G  +H
Sbjct: 76  TLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVH 135

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G ++      +  V+  L  MYA+ G +     +FD                        
Sbjct: 136 GAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDG----------------------- 172

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT 299
                        + PD VT + +L AC + G ID A ++F  + E+D+V W  MI GY 
Sbjct: 173 ------------AVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYA 220

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359
           Q G+  +AL +F+ M  E V+ ++ S+  V+S+C  L  L HG+ VH       V   + 
Sbjct: 221 QCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVT 280

Query: 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419
           + +AL+DMY KCG  D A  VF  M  RNV +W+S I G A NG   E+L L++ + +E 
Sbjct: 281 LGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFNDMKREG 340

Query: 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           ++P+  TF+SVL  C    L E G+ HFDS+  V+GI P L+HY  M+++ GR+  + +A
Sbjct: 341 VQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEA 400

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
           ++ I S+P +P+   WS LL  C M  + + GE+A R + ELE  N G Y++LSN+YA  
Sbjct: 401 LNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKNDGAYVLLSNIYADY 460

Query: 540 GRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKL 599
             WE V+S+R +MK+K VKK    S IE+D +VH+F+  D++HP  + I  +L ++ K L
Sbjct: 461 KNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSHPRYDEIEMKLEEISKCL 520

Query: 600 QEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           + +G+  NT  VL D +EEEK  ++  HSEK+A+A+ LI    GV PIR++ N+R+C DC
Sbjct: 521 RLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLK-GVVPIRVVMNLRICWDC 579

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           H   K  S I  R II+RD NRFHHF  G CSCKD W
Sbjct: 580 HNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 156/298 (52%), Gaps = 8/298 (2%)

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YA+ G L    ++FD     D+++  A+L+A A+ G +   R +FD+MP RD V++
Sbjct: 153 LVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTW 212

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  IAG+A  G SREAL VF  MQ +  +  + + V  L+AC  L  L  G+ +H  +  
Sbjct: 213 NAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVER 272

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             +   V +  AL DMYAK G +D+A  +F  M  RN+ +W+  I G   NG  ++ +DL
Sbjct: 273 YKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDL 332

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F +M+  G+ P+ +T  ++L  C   G +++  + F  ++    +      +  M+  Y 
Sbjct: 333 FNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYGLMVDMYG 392

Query: 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           + G+ ++AL   N M    +RP   + S+++ +C    +   G++   K V L   +D
Sbjct: 393 RAGRLKEALNFINSM---PMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELEDKND 447



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 36/275 (13%)

Query: 266 ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML---SEDVRPD 322
           A   T  +D A +L +           +MI  Y+++     +   +  +L   + ++ PD
Sbjct: 52  ALHNTTNLDYANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPD 111

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY-------------- 368
            ++ + +V +CA+L +   G  VHG  +  G + D  V + L+ MY              
Sbjct: 112 NYTFTFLVRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFD 171

Query: 369 -----------------CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
                             KCG  D A  +F+ MP R+ V+WN+MI GYAQ G+  EAL +
Sbjct: 172 GAVEPDLVTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDV 231

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           +  +  E +K +  + V VLSAC H  + + G+    +    + +  ++     ++++  
Sbjct: 232 FHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGR-WVHAYVERYKVRMTVTLGTALVDMYA 290

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  +VD+A+ +   +  + N   WS+ +   AM G
Sbjct: 291 KCGNVDRAMQVFWGMKER-NVYTWSSAIGGLAMNG 324



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 101/266 (37%), Gaps = 49/266 (18%)

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT--DDA 377
           R  K    S+++SC  L  +   + +H + VV G+ ++       +        T  D A
Sbjct: 6   RIAKHPTISLLNSCTTLKEM---KQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDYA 62

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPDSFTFV------ 428
             + N      + + NSMI  Y+++    ++   Y  +L  N   L PD++TF       
Sbjct: 63  NKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTC 122

Query: 429 -----SVLSACLHADLFERG--------------QNHFDSISAVH-----GITPSLDHYA 464
                 V   C+H  + + G                    +S+ H      + P L    
Sbjct: 123 AQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQT 182

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
            M+N   +  D+D A  +   +P + + + W+ +++  A  G  +   +   HL ++E +
Sbjct: 183 AMLNACAKCGDIDFARKMFDEMPER-DHVTWNAMIAGYAQCGRSREA-LDVFHLMQMEGV 240

Query: 525 NAGPYIMLSNMYAAC--------GRW 542
                 M+  + +AC        GRW
Sbjct: 241 KLNEVSMVL-VLSACTHLQVLDHGRW 265


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 323/573 (56%), Gaps = 36/573 (6%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           Y + I GF + G   +A+ +F +M +      +Y   + L AC     L  GK++HG ++
Sbjct: 93  YTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVLQRALGSGKEVHGLVL 152

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              LG +  +   L ++Y K G ++ AR +FD M  R++V+  +MI              
Sbjct: 153 KSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMI-------------- 198

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                G+CF  G +++A  +F+ +  +D VCWT +I G  +NG+
Sbjct: 199 ---------------------GSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGE 237

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
               L +F EM  + V P++ +   V+S+CA+L +L  G+ +H      GV+ +  V+ A
Sbjct: 238 FNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNRFVAGA 297

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI+MY +CG  D+A  +F+ +  ++V ++NSMI G A +G+ +EA+ L+ ++L+E ++P+
Sbjct: 298 LINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFSEMLKERVRPN 357

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TFV VL+AC H  L + G   F+S+  +HGI P ++HY CM+++LGR   +++A D I
Sbjct: 358 GITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFI 417

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
             +  + +  +  +LLS C +  +I  GE  A+ L E   I++G +IMLSN YA+ GRW 
Sbjct: 418 GRMGVEADDKMLCSLLSACKIHKNIGMGEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWS 477

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
             A +R  M+   + K    S IE++N +H+F S D  HPE + IY++L +L    +  G
Sbjct: 478 YAAEVREKMEKGGIIKEPGCSSIEVNNAIHEFFSGDLRHPERKRIYKKLEELNYLTKFEG 537

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P T++ LHD  +E+K  ++  HSE+LA+ Y L+      T +R+ KN+R+C DCH  +
Sbjct: 538 YLPATEVALHDIDDEQKELALAVHSERLAICYGLV-STEAYTTLRVGKNLRICDDCHAMI 596

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K  + I  R I++RD NRFHHF  G CSCKD W
Sbjct: 597 KLIAKITRRKIVVRDRNRFHHFENGECSCKDYW 629



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 8/275 (2%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           +L+  Y K G L  AR +FD MP RD+++   ++ +    G V++   +F++M  RD+V 
Sbjct: 165 KLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVC 224

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   I G    G     L+VF  MQ    EP + T V  L+ACAQL  L  G+ IH  + 
Sbjct: 225 WTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMR 284

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              +  N FV  AL +MY++ G+ID+A+ LFD +  +++ ++N MI G   +G+  + ++
Sbjct: 285 KCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVE 344

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGY 298
           LF EM    + P+ +T   +L AC   G +D  G +F  ++     E +   +  M+   
Sbjct: 345 LFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESMEMIHGIEPEVEHYGCMVDIL 404

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            + G+ E+A      M    V  D   + S++S+C
Sbjct: 405 GRVGRLEEAFDFIGRM---GVEADDKMLCSLLSAC 436



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 127/265 (47%), Gaps = 33/265 (12%)

Query: 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332
           ID A +LF   +  +   +T++I G+   G   DA+ LF +M+ + V  D +++++++ +
Sbjct: 75  IDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVLADNYAVTAMLKA 134

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS- 391
           C    +L  G+ VHG  +  G+  D  ++  L+++Y KCGV +DA  +F+ MP R+VV+ 
Sbjct: 135 CVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVAC 194

Query: 392 ------------------------------WNSMINGYAQNGQDLEALALYDKLLQENLK 421
                                         W  +I+G  +NG+    L ++ ++  + ++
Sbjct: 195 TVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVE 254

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
           P+  TFV VLSAC      E G+    +     G+  +      +IN+  R  D+D+A  
Sbjct: 255 PNEVTFVCVLSACAQLGALELGR-WIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQA 313

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKG 506
           L   +  K  S  +++++   A+ G
Sbjct: 314 LFDGVRVKDVS-TYNSMIGGLALHG 337



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 45/176 (25%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           +G    E  +  ++  C ++  +EL + + ++M     E N  F+   L++ Y++ G + 
Sbjct: 251 KGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCGVEVNR-FVAGALINMYSRCGDID 309

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136
            A+ LFD + ++D+ ++N++                               I G A  G 
Sbjct: 310 EAQALFDGVRVKDVSTYNSM-------------------------------IGGLALHGK 338

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
           S EA+++FS M K+R  P   T V  LNAC+           HG +V  +LGG +F
Sbjct: 339 SIEAVELFSEMLKERVRPNGITFVGVLNACS-----------HGGLV--DLGGEIF 381



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           H Q +H  A+      D  V+  L+ +YCK    D A  +F      NV  + S+I+G+ 
Sbjct: 42  HVQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFV 101

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT--- 457
             G   +A+ L+ +++++++  D++   ++L AC+        Q    S   VHG+    
Sbjct: 102 SFGSYTDAINLFCQMVRKHVLADNYAVTAMLKACVL-------QRALGSGKEVHGLVLKS 154

Query: 458 -PSLDHYAC--MINLLGRSSDVDKAVDLIKSLPHK 489
              LD      ++ L G+   ++ A  +   +P +
Sbjct: 155 GLGLDRSIALKLVELYGKCGVLEDARKMFDGMPER 189


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/483 (38%), Positives = 299/483 (61%), Gaps = 3/483 (0%)

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
           R   RN V++  ++SG+   G  ++   +   +   GL  D +  + ++    +   +++
Sbjct: 4   RGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEE 63

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS--EDVRPDKFSISSVVSSC 333
           A   F  I   + V W+ M+  Y QNG    AL L+ EM S  + + P++ +  +++ +C
Sbjct: 64  ARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDAC 123

Query: 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWN 393
           + L +L  G+ +H      G D DL+V +AL++ Y +CG   DA  VF+ M  R+V+SW+
Sbjct: 124 SFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWS 183

Query: 394 SMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           SMI+ +AQ G+  EA+ LY ++L E   PD   F+SVL AC ++ + E   + F SI   
Sbjct: 184 SMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGD 243

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
             + P+L+HYACM+++LGR+  +  A DL++ +P  P  L++ T+LS C +  D++ GE 
Sbjct: 244 TQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEA 303

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           AA  +FEL+P N+ PYI L+N+Y+A  R +D A IR  M+ + +KK    SWIE+ ++VH
Sbjct: 304 AAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVH 363

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F++ D+ HP+ + IY E+ +L ++++EAG+  +TK+VL D +E+EK   + YHSEKLA+
Sbjct: 364 EFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAI 423

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ LI  P G  P+RI+KN+RVC DCH   K  S + GR I++RD+NRFHHF+ G CSC 
Sbjct: 424 AFGLISTPPG-APLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCN 482

Query: 694 DNW 696
           D W
Sbjct: 483 DYW 485



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 148/309 (47%), Gaps = 13/309 (4%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+I   AL++ + +  SV++ RA F+K+   + VS++  +A +A  G +R AL+++  M 
Sbjct: 44  DVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMG 103

Query: 149 KDR--FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
             R    P   T ++ L+AC+ L  L  G++IH  +       ++ V NAL + Y + G 
Sbjct: 104 SARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGS 163

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  A+ +FD M  R+++SW+ MIS + + G+  + ++L+  M   G  PD++   ++L A
Sbjct: 164 LGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFA 223

Query: 267 CFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           C  +G ++ +G  F  I     V      +  M+    + GK  DA  L   M      P
Sbjct: 224 CSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLM---PFHP 280

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTV 380
                 +++S+C     +  G+      VV  +D ++      L ++Y       DA  +
Sbjct: 281 GPLLYMTMLSACKLYTDVERGEA--AAEVVFELDPENSSPYITLANIYSAAKRPKDAARI 338

Query: 381 FNMMPTRNV 389
             +M  R +
Sbjct: 339 RKLMEERGI 347



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 127/277 (45%), Gaps = 38/277 (13%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M+    E    T+V+ L+       L  G+++H ++    L  +V V  AL +MY K   
Sbjct: 1   MEIRGVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQS 60

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL--GLNPDEVTVSNIL 264
           +++AR  F++++  N+VSW+ M++ Y +NG  +  ++L++EM     G+ P+ VT   +L
Sbjct: 61  VEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLL 120

Query: 265 GAC--------------------FQT---------------GRIDDAGRLFHVIKEKDNV 289
            AC                    F T               G + DA  +F  ++ +D +
Sbjct: 121 DACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVI 180

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL-YHGQVVHGK 348
            W++MI  + Q G+ ++A+ L++ MLSE   PD     SV+ +C+    +   G      
Sbjct: 181 SWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSI 240

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
                V+  L   + ++D+  + G   DA  +  +MP
Sbjct: 241 VGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMP 277



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 71/144 (49%), Gaps = 6/144 (4%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
           +G A     +  L+  C+ +  +   +++ + +    ++ +     N L++FY + G L 
Sbjct: 107 KGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVC-NALVNFYGRCGSLG 165

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTAIAGFA 132
            A+ +FD M  RD+ISW++++SA A+ G V +   L+ +M     + D + + + +   +
Sbjct: 166 DAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACS 225

Query: 133 NKGFSREALQVFSRMQKD-RFEPT 155
           N G    +   F  +  D + EPT
Sbjct: 226 NSGVVEASGDFFRSIVGDTQVEPT 249


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/571 (35%), Positives = 315/571 (55%), Gaps = 38/571 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           LNAC     LR G+++H  ++        ++R  L   Y K   ++ AR + D M  +N+
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-------------- 268
           VSW  MIS Y + G   + + +F EM      P+E T + +L +C               
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGL 178

Query: 269 ---------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
                                + G+I +A  +F  + E+D V  T +I GY Q G +E+A
Sbjct: 179 IVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 238

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L +F+ + SE + P+  + +S++++ + LA L HG+  H   +   +    ++ ++LIDM
Sbjct: 239 LEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDM 298

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFT 426
           Y KCG    A  +F+ MP R  +SWN+M+ GY+++G   E L L+  +  E  +KPD+ T
Sbjct: 299 YSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVT 358

Query: 427 FVSVLSACLHADLFERGQNHFDS-ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485
            ++VLS C H  + + G N FD  ++  +G  P  +HY C++++LGR+  +D+A + IK 
Sbjct: 359 LLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKR 418

Query: 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545
           +P KP + +  +LL  C +   +  GE   R L E+EP NAG Y++LSN+YA+ GRW DV
Sbjct: 419 MPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADV 478

Query: 546 ASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605
            ++R+ M  K V K    SWI+ +  +H F + DRTHP  E +  ++ ++  K+++AG+ 
Sbjct: 479 NNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYV 538

Query: 606 PNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKF 665
           P+   VL+D  EE+K K +  HSEKLAL + LI    G+ PIR+ KN+R+C DCH F K 
Sbjct: 539 PDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGI-PIRVFKNLRICVDCHNFAKI 597

Query: 666 ASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            S +  R + LRD NRFH  V G CSC D W
Sbjct: 598 FSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 192/424 (45%), Gaps = 78/424 (18%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L++A+  +   G       Y  L+  C     +   +R+ +HM    Y P  T+L  RL
Sbjct: 35  RLQEALLEMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLP-ATYLRTRL 93

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L FY K   L                               +D R + D+MP ++ VS+ 
Sbjct: 94  LIFYGKCDCL-------------------------------EDARKVLDEMPEKNVVSWT 122

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             I+ ++  G S EAL VF+ M +   +P ++T  + L +C +   L  GKQIHG IV  
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
           N   ++FV ++L DMYAK G+I +AR +F+ +  R++VS   +I+GY + G  ++ +++F
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 242

Query: 246 QEMQLLGLNPDEVTVSNILGA--------------CF---------------------QT 270
             +   G++P+ VT +++L A              C                      + 
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 302

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSV 329
           G +  A RLF  + E+  + W  M+VGY+++G   + L LF  M  E  V+PD  ++ +V
Sbjct: 303 GNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 362

Query: 330 VSSCA------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +S C+         +++ G V        G +        ++DM  + G  D+A+     
Sbjct: 363 LSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEH----YGCIVDMLGRAGRIDEAFEFIKR 418

Query: 384 MPTR 387
           MP++
Sbjct: 419 MPSK 422



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 133/306 (43%), Gaps = 56/306 (18%)

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG+ ++AL+   EM             +++++C    +L  GQ VH   +         +
Sbjct: 33  NGRLQEALL---EMAMLGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYL 89

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            + L+  Y KC   +DA  V + MP +NVVSW +MI+ Y+Q G   EAL ++ ++++ + 
Sbjct: 90  RTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDG 149

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH------YACMINLLGRSS 474
           KP+ FTF +VL++C+ A     G+        +HG+    ++       + ++++  ++ 
Sbjct: 150 KPNEFTFATVLTSCIRASGLGLGKQ-------IHGLIVKWNYDSHIFVGSSLLDMYAKAG 202

Query: 475 DVDKAVDLIKSLPHK----------------------------------PNSLIWSTLLS 500
            + +A ++ + LP +                                  PN + +++LL+
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262

Query: 501 VCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             +    + HG+ A  H+   E P  A     L +MY+ CG       +  +M  +    
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERT--- 319

Query: 560 FAAYSW 565
             A SW
Sbjct: 320 --AISW 323


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/685 (32%), Positives = 356/685 (51%), Gaps = 83/685 (12%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N LL+ +A+S ++   + LFD++P R++ ++   I+GFA  G S     +F  MQ     
Sbjct: 328  NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGAC 387

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK---------- 203
            P  YT  S L  C+   +L+ GK +H  ++   +  +V + N++ D+Y K          
Sbjct: 388  PNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL 447

Query: 204  ---------------------GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
                                  G+++K+  +F R+  +++VSWN ++ G L+ G  +  +
Sbjct: 448  FELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHAL 507

Query: 243  DLFQEM-----------------------------QL------LGLNPDEVTVSNILGAC 267
            +    M                             QL       G + D    S+++   
Sbjct: 508  EQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMY 567

Query: 268  FQTGRIDDA----------------GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
             + GR+D A                 R+ +   +   V W +M+ GY  NGK ED L  F
Sbjct: 568  CKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTF 627

Query: 312  NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
              M+ E V  D  ++++++S+CA    L  G+ VH     +G   D  V S+LIDMY K 
Sbjct: 628  RLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKS 687

Query: 372  GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
            G  DDAW VF      N+V W SMI+GYA +GQ + A+ L++++L + + P+  TF+ VL
Sbjct: 688  GSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVL 747

Query: 432  SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
            +AC HA L E G  +F  +   + I P ++H   M++L GR+  + K  + I        
Sbjct: 748  NACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHL 807

Query: 492  SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551
            + +W + LS C +  +++ G+  +  L ++ P + G Y++LSNM A+  RW++ A +RS 
Sbjct: 808  TSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSL 867

Query: 552  MKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLV 611
            M  + VKK    SWI++ +++H FV  DR+HP+ + IY  L  LI +L+E G+S + KLV
Sbjct: 868  MHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLV 927

Query: 612  LHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIG 671
            + D +EE+    I +HSEKLA+ + +I   +  TPIRI+KN+R+C DCH F+K+AS ++ 
Sbjct: 928  MQDVEEEQGEVLISHHSEKLAVVFGIINTANR-TPIRIIKNLRICTDCHNFIKYASQLLD 986

Query: 672  RTIILRDSNRFHHFVGGNCSCKDNW 696
            R II+RD +RFHHF  G+CSC D W
Sbjct: 987  REIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 220/485 (45%), Gaps = 97/485 (20%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  YAKS  + +A+ LFD++P R+  +W  L+S  AR+GS                 
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS----------------- 370

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
                         S     +F  MQ     P  YT  S L  C+   +L+ GK +H  +
Sbjct: 371 --------------SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWM 416

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +   +  +V + N++ D+Y K    + A  LF+ MN  ++VSWN+MI  YL+ G  +K +
Sbjct: 417 LRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSL 476

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           D+F+ +                                     KD V W T++ G  Q G
Sbjct: 477 DMFRRLPY-----------------------------------KDVVSWNTIVDGLLQCG 501

Query: 303 KEEDALILFNEML--SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            E  AL     M+    +     FSI+ +++S   L+ +  G+ +HG  +  G D D  +
Sbjct: 502 YERHALEQLYCMVECGTEFSAVTFSIALILAS--SLSHVELGRQLHGMVLKFGFDSDGFI 559

Query: 361 SSALIDMYCKCGVTDDAWTVFNMM----------------PTRNVVSWNSMINGYAQNGQ 404
            S+L++MYCKCG  D A  +   +                P   +VSW SM++GY  NG+
Sbjct: 560 RSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGK 619

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY- 463
             + L  +  +++E +  D  T  +++SAC +A + E G++     + V  I   +D Y 
Sbjct: 620 YEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVH---AYVQKIGHRIDAYV 676

Query: 464 -ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
            + +I++  +S  +D A  + +   ++PN ++W++++S  A+ G   H    A  LFE E
Sbjct: 677 GSSLIDMYSKSGSLDDAWMVFRQ-SNEPNIVMWTSMISGYALHGQGMH----AIGLFE-E 730

Query: 523 PINAG 527
            +N G
Sbjct: 731 MLNQG 735



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 178/380 (46%), Gaps = 52/380 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + ++G    +   + ++  C+  N+++L K + + M  N  + +   L N +L  Y K  
Sbjct: 381 MQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVV-LGNSILDLYLKCK 439

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
              YA  LF+ M   D++SWN ++ A+ R+G V+    +F ++P +D VS+NT + G   
Sbjct: 440 VFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQ 499

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G+ R AL+    M +   E +  T   AL   + L  +  G+Q+HG ++      + F+
Sbjct: 500 CGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFI 559

Query: 194 RNALTDMYAKGGEIDKARWL-----FDRMNNRN-----------LVSWNLMISGYLKNGQ 237
           R++L +MY K G +DKA  +      D +   N           +VSW  M+SGY+ NG+
Sbjct: 560 RSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGK 619

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACF----------------------------- 268
            +  +  F+ M    +  D  TV+ I+ AC                              
Sbjct: 620 YEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSS 679

Query: 269 ------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 ++G +DDA  +F    E + V WT+MI GY  +G+   A+ LF EML++ + P+
Sbjct: 680 LIDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPN 739

Query: 323 KFSISSVVSSCAKLASLYHG 342
           + +   V+++C+    +  G
Sbjct: 740 EVTFLGVLNACSHAGLIEEG 759



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 16/184 (8%)

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y+KNG             L  LNP     +++L    ++  +  A +LF  I +++   W
Sbjct: 315 YVKNGS------------LQTLNP----ANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTW 358

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           T +I G+ + G  E    LF EM ++   P+++++SSV+  C+   +L  G+ VH   + 
Sbjct: 359 TILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLR 418

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411
            G+D D+++ ++++D+Y KC V + A  +F +M   +VVSWN MI  Y + G   ++L +
Sbjct: 419 NGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDM 478

Query: 412 YDKL 415
           + +L
Sbjct: 479 FRRL 482



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 60/226 (26%)

Query: 324 FSISSV------VSSCAKLASLYHGQV---------VHGKAVVLGVDDDLLVSSALIDMY 368
           FSISS       + SC    SLYH  +         +H   V  G    L  ++ L+ +Y
Sbjct: 279 FSISSYFYPPLWLQSC----SLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLY 334

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            K      A  +F+ +P RN  +W  +I+G+A+ G       L+ ++  +   P+ +T  
Sbjct: 335 AKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLS 394

Query: 429 SVLSAC-----------------------------------LHADLFERGQNHFDSISAV 453
           SVL  C                                   L   +FE  +  F+ ++  
Sbjct: 395 SVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEG 454

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
             ++     +  MI    R+ DV+K++D+ + LP+K + + W+T++
Sbjct: 455 DVVS-----WNIMIGAYLRAGDVEKSLDMFRRLPYK-DVVSWNTIV 494


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/639 (33%), Positives = 349/639 (54%), Gaps = 43/639 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G V   R +FD M + D +S+N  IAG    G     L++F  M  D  +
Sbjct: 228 NALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQ 287

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S   A   L D+   K++HG  V     G+V   N+L  MYA  G + +AR +
Sbjct: 288 PNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTV 347

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV------------- 260
           F RM+ R+ ++W  MISGY KNG P K ++++  M++  ++PD++T+             
Sbjct: 348 FSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSL 407

Query: 261 ----------------------SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                 + IL    ++ RID A  +F  + EKD V W++MI G+
Sbjct: 408 DVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGF 467

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             N +  +AL  F  ML+ DV+P+  +  + +++CA   +L  G+ +H   +  G++ + 
Sbjct: 468 CFNHRNFEALYYFRHMLA-DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIEYEG 526

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +ALID+Y KCG T  AW  F     ++VVSWN MI G+  +G    AL+ ++++++ 
Sbjct: 527 YLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGHGDTALSFFNQMVKI 586

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PD  TFV++L AC    +   G   F S++  + I P+L HYACM++LL R+  + +
Sbjct: 587 GECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSIVPNLKHYACMVDLLSRAGQLTE 646

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I  +P  P++ +W  LL+ C +   ++ GE+AA+++  LEP +AG +++L ++YA 
Sbjct: 647 AYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLALEPNDAGYHVLLCDLYAD 706

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
              W+ +A +R +M+ K +   +  SW+E+   VH F+++D +HP+   I   L  + ++
Sbjct: 707 ACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYER 766

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKS--ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           ++ +G++P    V     E+E +K    C HSE+LA+A+ LI    G T I + KN   C
Sbjct: 767 MKASGYAP----VESHCPEDEVLKDDIFCGHSERLAVAFGLINTTPG-TSISVTKNQYTC 821

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
             CH  +K  S+I+ R II+RDS + HHF  G+CSC D 
Sbjct: 822 QSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGDE 860



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 209/458 (45%), Gaps = 68/458 (14%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L QA+  L S  +   E+AY  L   C     VE   R  +H D            +R 
Sbjct: 71  QLAQALWLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHAD------------DRH 118

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
             F  + G                    NA+LS   R G       +F KMP RD  S+N
Sbjct: 119 AWFGLRLG--------------------NAMLSMLVRFGETWHAWRVFAKMPERDVFSWN 158

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             + G+   G   EAL ++ RM      P  YT    L +C  + D R G+++H  ++  
Sbjct: 159 VMVGGYGKSGLLDEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRF 218

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G  V V NAL  MYAK G++  AR +FD M   + +SWN MI+G+ +NG+    ++LF
Sbjct: 219 GFGEEVDVLNALMTMYAKCGDVMAARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELF 278

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
             M    + P+ +T++++  A                                       
Sbjct: 279 LTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASL 338

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +  A  +F  +  +D + WT MI GY +NG  + AL ++  M   +V PD  +I+S +
Sbjct: 339 GMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASAL 398

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA L SL  G  +H  A   G    ++V++A+++MY K    D A  VF  M  ++VV
Sbjct: 399 AACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVV 458

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           SW+SMI G+  N ++ EAL  +  +L  ++KP+S TF+
Sbjct: 459 SWSSMIAGFCFNHRNFEALYYFRHMLA-DVKPNSVTFI 495



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 163/350 (46%), Gaps = 44/350 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  +A  G ++  R +F +M  RD++++   I+G+   GF  +AL+V++ M+
Sbjct: 324 DVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALME 383

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P D T  SAL ACA L  L  G ++H           + V NA+ +MYAK   ID
Sbjct: 384 VNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRID 443

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
           KA  +F  M+ +++VSW+ MI+G+  N +  + +  F+ M L  + P+ VT         
Sbjct: 444 KAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACA 502

Query: 260 -----------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                                        + ++   C QTG    A   F     KD V 
Sbjct: 503 ATGALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGY---AWAQFCAHGAKDVVS 559

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKA 349
           W  MI G+  +G  + AL  FN+M+     PD+ +  +++ +C++   +  G ++ H   
Sbjct: 560 WNIMIAGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMT 619

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMING 398
               +  +L   + ++D+  + G   +A+   N MP T +   W +++NG
Sbjct: 620 EKYSIVPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNG 669



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           L + +A++ M  + G T  AW VF  MP R+V SWN M+ GY ++G   EAL LY +++ 
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKSGLLDEALDLYHRMMW 182

Query: 418 ENLKPDSFTFVSVLSAC 434
             ++PD +TF  VL +C
Sbjct: 183 AGVRPDVYTFPCVLRSC 199


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/587 (34%), Positives = 332/587 (56%), Gaps = 42/587 (7%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y+ L+  C     ++L K L SH  +      TTFL NRL+ FY+K   +  A  +F  +
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHF-IKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVL 75

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P+++  SWN ++SA++RSG   +   L D+MP  + VSYN+ I+G  + GF +E+L VF 
Sbjct: 76  PVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFK 135

Query: 146 RM--QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
            M  Q       ++T VS + +CA L      +Q+HG  ++  L  N+ + NAL D    
Sbjct: 136 TMLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALID---- 191

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
                                       Y K G+P     +F  M       D V+ +++
Sbjct: 192 ---------------------------AYGKCGEPDISFSIFSRMP----ERDVVSWTSM 220

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
           + A  Q  R++DA  LF  ++EK+ V WT +I G+ QNG+ ++AL LF +M  E + P  
Sbjct: 221 VAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEALHLFEQMREEGIPPSA 280

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD---DLLVSSALIDMYCKCGVTDDAWTV 380
           F+ +SV+S+CA LA +  G+ +HG  +     D   ++ + +ALIDMYCKCG    A T+
Sbjct: 281 FTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNALIDMYCKCGQMRSATTL 340

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
           F  M  +++VSWNS+I G+AQNG   E+LA+++++++ +++P+  TF+ +LSAC H  L 
Sbjct: 341 FKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIRPNHVTFLGLLSACCHTGLV 400

Query: 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL-IWSTLL 499
             G    DS+   +G+ P  DHYA MI+LLGR++ +++A+ LIK  P   + + +W  LL
Sbjct: 401 SEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMGLIKRAPKGSDHVGMWGALL 460

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             C + G++     AA  LF+LEP NA  Y+M+ N+YAA  RW++   +R  M  + ++K
Sbjct: 461 GACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNIYAAASRWDEARQVRRLMMERGLRK 520

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            AA SWIE+ N  H+FV+++R+H +   +YE +  L+ ++ ++G+ P
Sbjct: 521 EAACSWIEVRNTRHQFVAKERSHCQINEVYEVIHNLVDQMYDSGYLP 567



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 171/315 (54%), Gaps = 15/315 (4%)

Query: 4   KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHN 63
           K  L+Q  + L+       E     LV  C  +   EL +++     +     N   + N
Sbjct: 135 KTMLKQCSNVLFD------EFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNI-IIGN 187

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L+  Y K G+   +  +F +MP RD++SW ++++A+A++  ++D   LF +M  +++VS
Sbjct: 188 ALIDAYGKCGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVS 247

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   IAGFA  G   EAL +F +M+++   P+ +T  S L+ACA L  + RGK+IHG I+
Sbjct: 248 WTALIAGFAQNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHII 307

Query: 184 VG---NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
                +   N+F+ NAL DMY K G++  A  LF  M+ +++VSWN +I+G+ +NG  ++
Sbjct: 308 RSTCIDYFCNIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEE 367

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMI 295
            + +F+ M    + P+ VT   +L AC  TG + +  R+   +++   VC     +  MI
Sbjct: 368 SLAVFERMIEADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMI 427

Query: 296 VGYTQNGKEEDALIL 310
               +N + E+A+ L
Sbjct: 428 DLLGRNNRLEEAMGL 442


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 328/589 (55%), Gaps = 44/589 (7%)

Query: 116 MPIRDSVSYNTAIAG------FANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQ 168
           + I +S+S+ T  A       F      R ++ ++S M +     P  +T    L AC+ 
Sbjct: 86  LSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSN 145

Query: 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM-NNRNLVSWNL 227
              +R G Q+   ++      +VFVRNAL  +Y     ++ A+ +FD + ++R++VSWN 
Sbjct: 146 AFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNS 205

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD 287
           MI G+++ GQ                                   I  A +LF  + EKD
Sbjct: 206 MIVGFVRLGQ-----------------------------------ISVAQKLFVEMPEKD 230

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W T+I G  QNG+ E AL  F E+  + +RP++  + S++++ A+L +L +G+ +H 
Sbjct: 231 VISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHS 290

Query: 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
            A  L       + +AL+DMY KCG  D++  +F+ MP ++  SWN MI G A +G   E
Sbjct: 291 IANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQE 350

Query: 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467
           ALAL++K L +   P + TF+ VL+AC  A L   G++ F  ++  +GI P ++HY CM+
Sbjct: 351 ALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMV 410

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527
           +LL R+  V  AV++I  +P  P+ ++W+++L  C + G I+ GE     L +++P + G
Sbjct: 411 DLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNG 470

Query: 528 PYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEI 587
            Y+ L+ ++A   +WEDV+ +R  M  +N  K A +S IE + +VH+FV+ D+ H  T  
Sbjct: 471 HYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTE 530

Query: 588 IYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPI 647
           IY+ L  +  ++  AG+S N   VLHD +EEEK  +I  HSE+LA+A+ L+    G   I
Sbjct: 531 IYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDG-DCI 589

Query: 648 RIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           RI+KN+RVCGDCH   K  S +  R II+RD +RFHHF  G CSC+D W
Sbjct: 590 RIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 168/338 (49%), Gaps = 12/338 (3%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYA 78
           A  +   T ++  C+    +    ++Q+H + L F +    F+ N L+H Y    ++  A
Sbjct: 130 APNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVK--DVFVRNALIHLYCTCCRVESA 187

Query: 79  RDLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           + +FD++P  RD++SWN+++    R G +   + LF +MP +D +S+ T I+G    G  
Sbjct: 188 KQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGEL 247

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +AL  F  + + +  P +   VS L A AQL  L  GK+IH             +  AL
Sbjct: 248 EKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTAL 307

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            DMYAK G ID++R+LFDRM  ++  SWN+MI G   +G  ++ + LF++    G +P  
Sbjct: 308 VDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVN 367

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFN 312
           VT   +L AC + G + +    F ++      E +   +  M+   ++ G   DA+ + N
Sbjct: 368 VTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMIN 427

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
            M +    PD    +SV+ SC     +  G+ +  K +
Sbjct: 428 RMPAP---PDPVLWASVLGSCQVHGFIELGEEIGNKLI 462



 Score = 85.5 bits (210), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 122/273 (44%), Gaps = 46/273 (16%)

Query: 274 DDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR-PDKFSISSVVSS 332
           D A  +++ I          MI  + +      ++ L++ M    V  P+K +++ V+ +
Sbjct: 83  DYALSIYNSISHPTVFATNNMIRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQA 142

Query: 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVS 391
           C+   ++  G  V    + LG   D+ V +ALI +YC C   + A  VF+ +P +R+VVS
Sbjct: 143 CSNAFAIREGAQVQTHVIKLGFVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVS 202

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WNSMI G+ + GQ    +++  KL  E  + D  ++ +++S C+                
Sbjct: 203 WNSMIVGFVRLGQ----ISVAQKLFVEMPEKDVISWGTIISGCV---------------- 242

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDI 508
                               ++ +++KA+D  K L     +PN  I  +LL+  A  G +
Sbjct: 243 --------------------QNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLGTL 282

Query: 509 KHGEMAARHLFELE-PINAGPYIMLSNMYAACG 540
           ++G+        L  P+ A     L +MYA CG
Sbjct: 283 EYGKRIHSIANSLRFPMTASLGTALVDMYAKCG 315


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/550 (36%), Positives = 322/550 (58%), Gaps = 17/550 (3%)

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
           A+  C +   LR G+Q+H ++V       +++   L  MYA+ G ++ AR + D M  RN
Sbjct: 41  AITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERN 100

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE---------------VTVSNILGA 266
           +VSW  MISGY +N +P +  +LF  M   G++  +                  S++L  
Sbjct: 101 VVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTNFELHMFVGSSLLDM 160

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
             ++  I +A R+F ++  +D V +T ++ GYTQ G +E+AL LF  + +E ++ ++ + 
Sbjct: 161 YAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTF 220

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           ++++++ + L+S+ +G+ VHG  +   +   + + ++LIDMY KCG    +  VF+ MP 
Sbjct: 221 TALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPE 280

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNH 446
           R+VVSWN+M+ GY ++G   E + L+  +  E +KPDS T ++VLS   H  L + G + 
Sbjct: 281 RSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVLSGYSHGGLVDEGLDM 339

Query: 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           FD I        + +HY C+I+LLGRS  + KA++LI+ +P +P   IW +LL  C +  
Sbjct: 340 FDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPTRAIWGSLLGACRVHT 399

Query: 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566
           ++  GE  A+ L ++EP NAG Y++LSN+YAA G W+DV  +R  M  K V K    SW+
Sbjct: 400 NVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKLMLKKTVIKEPGRSWM 459

Query: 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICY 626
            +D  +H F S +R HP  E I  ++ ++   ++ AGF P+   VLHD  +E+K + +  
Sbjct: 460 ILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSCVLHDVDDEQKERMLLG 519

Query: 627 HSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686
           HSEKLA+ + L+  P  +T I++MKN+R+C DCH F KF S + GR I LRD NRFH   
Sbjct: 520 HSEKLAITFGLMSTPSDLT-IQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLIT 578

Query: 687 GGNCSCKDNW 696
            G C+C D W
Sbjct: 579 EGACTCGDYW 588



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/427 (25%), Positives = 200/427 (46%), Gaps = 63/427 (14%)

Query: 20  AATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79
           AA    Y   + +C     +   +++ + M    Y P   +L  RL+  YA+ G L  AR
Sbjct: 32  AARFHDYDDAITECVERRALREGRQVHARMVAAGYRP-ALYLATRLVIMYARCGALEDAR 90

Query: 80  DLFDKMPLRDIISWNALLSAH--------------------------------------- 100
           ++ D MP R+++SW A++S +                                       
Sbjct: 91  NVLDGMPERNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVKQVHAFAVKTNFELH 150

Query: 101 -----------ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
                      A+S ++Q+ R +FD +P RD VSY   ++G+   G   EAL +F  +  
Sbjct: 151 MFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYN 210

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           +  +    T  + LNA + L  +  GKQ+HG I+   L   + ++N+L DMY+K G++  
Sbjct: 211 EGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLY 270

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           +R +FD M  R++VSWN M+ GY ++G   + + LF+ M    + PD VT+  +L     
Sbjct: 271 SRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSM-CDEVKPDSVTLLAVLSGYSH 329

Query: 270 TGRIDDAGRLF-HVIKEKDNVC----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
            G +D+   +F H++KE+  +     +  +I    ++G+ + AL L  +M     +P + 
Sbjct: 330 GGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKM---PFQPTRA 386

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTDDAWTVFNM 383
              S++ +C    +++ G+ V  K  +L ++ +   +  ++ ++Y   G+  D + V  +
Sbjct: 387 IWGSLLGACRVHTNVHVGEFVAQK--LLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKL 444

Query: 384 MPTRNVV 390
           M  + V+
Sbjct: 445 MLKKTVI 451



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 8/143 (5%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           LY+ G    +  +T L+   + ++ ++  K++   + L    P    L N L+  Y+K G
Sbjct: 208 LYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHG-LILRRELPFFMALQNSLIDMYSKCG 266

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-----PIRDSVSYNTAI 128
           KL Y+R +FD MP R ++SWNA+L  + R G   ++  LF  M     P  DSV+    +
Sbjct: 267 KLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEVKP--DSVTLLAVL 324

Query: 129 AGFANKGFSREALQVFSRMQKDR 151
           +G+++ G   E L +F  + K++
Sbjct: 325 SGYSHGGLVDEGLDMFDHIVKEQ 347


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 318/555 (57%), Gaps = 39/555 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  ++ +  +A+    +D   LFD+MP RD  S+N  I+ +   G   +AL++F  M+
Sbjct: 332 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 391

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F+P   T  + +++CA+LLDL RGK+IH ++V      + FV +AL DMY K G ++
Sbjct: 392 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 451

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A+ +F+++  +N+VSWN MI+GY   G  K CI+LF+ M   G+ P   T+S+IL AC 
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                             F+ G I  A  +F  + + + V W  
Sbjct: 512 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 571

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI GY + G   +AL++F +M    V+PD  + +SV+ +C++LA L  G+ +H   +   
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           ++ + +V  AL+DMY KCG  D+A  +FN +P R+ VSW SMI  Y  +GQ  EAL L++
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 691

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ Q + KPD  TF+++LSAC HA L + G  +F+ + A +G  P+++HY+C+I+LLGR 
Sbjct: 692 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 751

Query: 474 SDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
             + +A ++++  P  + +  + STL S C +   +  GE   R L E +P +   YI+L
Sbjct: 752 GRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIIL 811

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYA+  +W++V  +R  +K   +KK    SWIE+  ++H FV ED++HP+ ++IYE +
Sbjct: 812 SNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECM 871

Query: 593 SKL---IKKLQEAGF 604
           S L   ++K Q   F
Sbjct: 872 SILASHVEKYQVLSF 886



 Score =  221 bits (563), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 133/439 (30%), Positives = 222/439 (50%), Gaps = 46/439 (10%)

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           D   +N  +A         E L+VF R+      +P  +T+ S L AC+ L  +  GK +
Sbjct: 261 DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 320

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  ++      +V V ++   MYAK    + A  LFD M  R++ SWN +IS Y ++GQP
Sbjct: 321 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 380

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACF------------------------------ 268
           +K ++LF+EM++ G  PD VT++ ++ +C                               
Sbjct: 381 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 440

Query: 269 -----QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
                + G ++ A  +F  I+ K+ V W +MI GY+  G  +  + LF  M  E +RP  
Sbjct: 441 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 500

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            ++SS++ +C++  +L  G+ +HG  +   V+ D+ V+S+LID+Y KCG    A  VF  
Sbjct: 501 TTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQN 560

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           MP  NVVSWN MI+GY + G  LEAL ++  + +  +KPD+ TF SVL AC    + E+G
Sbjct: 561 MPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG 620

Query: 444 QN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           +  H   I +   I   +     ++++  +   VD+A+ +   LP + + + W+++++  
Sbjct: 621 KEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAAY 677

Query: 503 AMKGDIKHGE-MAARHLFE 520
                  HG+   A  LFE
Sbjct: 678 G-----SHGQAFEALKLFE 691



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 157/302 (51%), Gaps = 14/302 (4%)

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKE 304
           Q++  LGL  +     +++   F       A  +F  I+   D   W  ++   T+N   
Sbjct: 219 QKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIF 278

Query: 305 EDALILFNEMLS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
            + L +F+ +L    ++PD F+  SV+ +C+ L  + +G++VH   +  G   D++V S+
Sbjct: 279 IEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSS 338

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
            + MY KC V +DA  +F+ MP R+V SWN++I+ Y Q+GQ  +AL L++++     KPD
Sbjct: 339 AVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPD 398

Query: 424 SFTFVSVLSACLHADLFERGQN-HFDSIS---AVHGITPSLDHYACMINLLGRSSDVDKA 479
           S T  +V+S+C      ERG+  H + +    A+ G   S      ++++ G+   ++ A
Sbjct: 399 SVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS-----ALVDMYGKCGCLEMA 453

Query: 480 VDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539
            ++ + +  K N + W+++++  ++KGD K      R + E E I       LS++  AC
Sbjct: 454 KEVFEQIQRK-NVVSWNSMIAGYSLKGDSKSCIELFRRMDE-EGIRP-TLTTLSSILMAC 510

Query: 540 GR 541
            R
Sbjct: 511 SR 512



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 42/255 (16%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYA 400
           G+++H K V LG+ +++ +  +LI++Y  C +   A  VF  +    ++  WN ++    
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 401 QNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSAC-----------LHADLFERG----- 443
           +N   +E L ++ +LL    LKPD+FT+ SVL AC           +H  + + G     
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDV 333

Query: 444 ------------QNHFDSISAVHGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLP-- 487
                        N F+    +    P  D   +  +I+   +    +KA++L + +   
Sbjct: 334 VVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVS 393

Query: 488 -HKPNSLIWSTLLSVCAMKGDIKHGEMA----ARHLFELEPINAGPYIMLSNMYAACGRW 542
             KP+S+  +T++S CA   D++ G+       R  F L+   +     L +MY  CG  
Sbjct: 394 GFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSA---LVDMYGKCGCL 450

Query: 543 EDVASIRSSMKSKNV 557
           E    +   ++ KNV
Sbjct: 451 EMAKEVFEQIQRKNV 465


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/695 (34%), Positives = 364/695 (52%), Gaps = 108/695 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFS 145
           ++   NA++S + +  +V   R +FD++  R   DSV++N+ ++ +++      A+ +F 
Sbjct: 160 NVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFR 219

Query: 146 RMQKDR-FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            M       P     V+ L  C  L     G+Q+HG  V   L  +VFV NAL DMYAK 
Sbjct: 220 EMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKC 279

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM---------------- 248
           G+++ A  +F+RM  +++V+WN M++GY +NG+ +  + LF +M                
Sbjct: 280 GKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVI 339

Query: 249 -----------------QLLGLN--PDEVTVSNILGACFQTGRI---------------- 273
                            Q+ G    P+ VT+ ++L AC   G +                
Sbjct: 340 SGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILK 399

Query: 274 -------DDAGRLFHVI---------------------KEKDNVCWTTMIVGYTQNGKEE 305
                  DD   +  +I                     K++D V WT MI GY Q+G   
Sbjct: 400 GEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDAN 459

Query: 306 DALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG-VDDDLL-VS 361
            AL LF+EM   D  + P+ F+IS V+ +CA+LA+L  G+ +H   +    +D D+L V+
Sbjct: 460 HALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVA 519

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           + LIDMY K G  D A  VF+ M  RN VSW S++ GY  +G+  +A  ++D++ +E L 
Sbjct: 520 NCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALV 579

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481
            D  TF+ VL AC H+ +               G+ P ++HYACM++LLGR+  + +A+ 
Sbjct: 580 LDGITFLVVLYACSHSGM-------------DFGVDPGVEHYACMVDLLGRAGRLGEAMR 626

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541
           LI  +P +P  ++W  LLS C +  + +  E AA+ L EL+  N G Y +LSN+YA   R
Sbjct: 627 LINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLELKADNDGTYTLLSNIYANARR 686

Query: 542 WEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601
           W+DVA I   MK   +KK   +SW++    +  F   DRTH +++ IYE L+ LIK+++ 
Sbjct: 687 WKDVARIGYLMKRTGIKKIPGWSWVKGRKGMETFYVGDRTHLQSQKIYETLADLIKRIK- 745

Query: 602 AGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHL 661
           A FS      LHD  +EEK   +  HSEKLALAY ++  P G  PIRI KN+R+CGD H 
Sbjct: 746 ANFS------LHDVDDEEKGDQLSEHSEKLALAYAILTLPPG-APIRITKNLRICGDFHS 798

Query: 662 FMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + + S I+   IILRDS+RFH F  G+CSCK  W
Sbjct: 799 AITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 147/523 (28%), Positives = 234/523 (44%), Gaps = 90/523 (17%)

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDK--MPIRDSVSY-NTAIA 129
            KL + + + +   L    +   L+  +  S S+ +   L +K   P   SV + N  I 
Sbjct: 40  AKLLHQQYIINGHLLNSYTNVTNLIYTYISSNSITNAILLLEKNVTPSHSSVYWWNQLIR 99

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
              +      AL++F RM+   + P  YT      AC ++ +   G  IHG ++      
Sbjct: 100 HALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGASIHGCVIRLGFES 159

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL---VSWNLMISGYLKNGQPKKCIDLFQ 246
           NVFV NA+  MY K   +  AR +FD +  R +   V+WN ++S Y     P   + LF+
Sbjct: 160 NVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSHCFVPNVAVSLFR 219

Query: 247 EMQL-LGLNPDEVTVSNILGAC-----------------------------------FQT 270
           EM +  G+ PD V V NIL  C                                    + 
Sbjct: 220 EMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHGFCVRSGLVEDVFVGNALVDMYAKC 279

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV----------- 319
           G+++DA ++F  ++ KD V W  M+ GY+QNG+ EDAL LF +M  E +           
Sbjct: 280 GKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMREEKIESDVVTWSSVI 339

Query: 320 ------------------------RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
                                   RP+  ++ S++S+CA + +L HG+  H  +V   + 
Sbjct: 340 SGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLHGKETHCYSVKFILK 399

Query: 356 -------DDLLVSSALIDMYCKCGVTDDAWTVFN-MMPT-RNVVSWNSMINGYAQNGQDL 406
                  DDL V +ALIDMY KC   + A  +F+ + P  R+VV+W  MI GYAQ+G   
Sbjct: 400 GEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTWTVMIGGYAQHGDAN 459

Query: 407 EALALYDKLLQEN--LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
            AL L+ ++ + +  + P+ FT   VL AC      + G+     +     I   +   A
Sbjct: 460 HALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVA 519

Query: 465 -CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            C+I++  +S DVD A  +  S+  K N++ W++LL+   M G
Sbjct: 520 NCLIDMYSKSGDVDTAQVVFDSMS-KRNAVSWTSLLTGYGMHG 561



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 210/427 (49%), Gaps = 67/427 (15%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
            F+ N L+  YAK GK+  A  +F++M  +D+++WNA+++ ++++G  +D  +LF KM  
Sbjct: 266 VFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFGKMRE 325

Query: 119 R----DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
                D V++++ I+G+A +GF  EA+ VF +M   R  P   T +S L+ACA +  L  
Sbjct: 326 EKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVGALLH 385

Query: 175 GKQIHGKIVVGNLGG-------NVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSW 225
           GK+ H   V   L G       ++ V NAL DMYAK   ++ AR +FD +   +R++V+W
Sbjct: 386 GKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRDVVTW 445

Query: 226 NLMISGYLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACF--------------- 268
            +MI GY ++G     + LF EM  +   + P++ T+S +L AC                
Sbjct: 446 TVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYV 505

Query: 269 ----------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEED 306
                                 ++G +D A  +F  + +++ V WT+++ GY  +G+ ED
Sbjct: 506 LRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWTSLLTGYGMHGRSED 565

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           A  +F+EM  E +  D  +   V+ +C+               +  GVD  +   + ++D
Sbjct: 566 AFRVFDEMRKEALVLDGITFLVVLYACSH------------SGMDFGVDPGVEHYACMVD 613

Query: 367 MYCKCGVTDDAWTVFNMMPTRNV-VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           +  + G   +A  + N MP     V W ++++    +  +  A     KLL+  LK D+ 
Sbjct: 614 LLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEFAAKKLLE--LKADND 671

Query: 426 TFVSVLS 432
              ++LS
Sbjct: 672 GTYTLLS 678



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 29  LVLDCTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           +++ C R+  ++  K++ ++ +  +  + +  F+ N L+  Y+KSG +  A+ +FD M  
Sbjct: 485 VLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSK 544

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKM 116
           R+ +SW +LL+ +   G  +D   +FD+M
Sbjct: 545 RNAVSWTSLLTGYGMHGRSEDAFRVFDEM 573


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/441 (43%), Positives = 284/441 (64%), Gaps = 7/441 (1%)

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIK--EKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
           ++ ++ GAC   G  + A R+F  I   E++ V W +++ G+  NG+  + L +F EML 
Sbjct: 162 SLVHLYGAC---GLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFREMLE 218

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
            +  PD F++ SV+++CA++  L  G+ VH     +G+  +    +ALID+Y KCG  DD
Sbjct: 219 VEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDD 278

Query: 377 AWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           A  +F  M   R VVSW S+I G A NG  ++AL L+  + +E L P   T V VL AC 
Sbjct: 279 ARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACS 338

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           H  L + G  +FD + A +GITP ++H  CM++LLGR+  V++A + I ++P +PN+++W
Sbjct: 339 HCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVW 398

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            TLL  CAM   ++ GE A   L EL+P ++G Y++LSN+YA  GRW DV  +R +M + 
Sbjct: 399 RTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTH 458

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            V+K   +S +E+ N V++FV  DR+HPET+ IYE L  + ++L+  G+ P+T  VL D 
Sbjct: 459 GVRKNPGHSLVELRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADI 518

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           ++EEK  ++ YHSE+LA+A+ L+K   G TPIRI+KN+RVCGDCH+ +K  S +  R II
Sbjct: 519 EDEEKESALNYHSERLAIAFALLKSLPG-TPIRIVKNLRVCGDCHMAIKLISKVYDREII 577

Query: 676 LRDSNRFHHFVGGNCSCKDNW 696
           +RD +RFHHF GG CSCKD W
Sbjct: 578 VRDRSRFHHFKGGACSCKDYW 598



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 159/372 (42%), Gaps = 44/372 (11%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  C R+  +   + L +    N    +  F+ N L+H Y   G    A  +FD++
Sbjct: 125 YPPLLQACARLLALRYGEGLHAEACKNGLV-SLVFVKNSLVHLYGACGLFESAHRVFDEI 183

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P                              P R+ VS+N+ + GFA  G   E L VF 
Sbjct: 184 P-----------------------------PPERNLVSWNSVLNGFAANGRPNEVLTVFR 214

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            M +  F P  +T VS L ACA++  L  G+++H  +    L GN    NAL D+YAK G
Sbjct: 215 EMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCG 274

Query: 206 EIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            +D AR +F  M   R +VSW  +I G   NG     + LF  M+   L P E+T+  +L
Sbjct: 275 GVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVL 334

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G +DD  R F  +K +  +         M+    + G+ E+A    N + +  +
Sbjct: 335 YACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEA---HNYITTMPL 391

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDA 377
            P+     +++ +CA    L  G+    + V L  G   D ++ S   ++Y   G   D 
Sbjct: 392 EPNAVVWRTLLGACAMHKKLEIGEAAWARLVELDPGHSGDYVLLS---NLYAGVGRWADV 448

Query: 378 WTVFNMMPTRNV 389
             +   M T  V
Sbjct: 449 HVLRKTMVTHGV 460



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 43/327 (13%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
           +P  D  S NT +  FA+    R AL +  R       P  +T+   L ACA+LL LR G
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLAP---PDTHTYPPLLQACARLLALRYG 141

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYL 233
           + +H +     L   VFV+N+L  +Y   G  + A  +FD +    RNLVSWN +++G+ 
Sbjct: 142 EGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFA 201

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----------------------- 270
            NG+P + + +F+EM  +   PD  TV ++L AC +                        
Sbjct: 202 ANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAH 261

Query: 271 ------------GRIDDAGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                       G +DDA ++F  +   +  V WT++IVG   NG   DAL LF+ M  E
Sbjct: 262 AGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMERE 321

Query: 318 DVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
            + P + ++  V+ +C+    +  G +         G+   +     ++D+  + G  ++
Sbjct: 322 KLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEE 381

Query: 377 AWTVFNMMPTR-NVVSWNSMINGYAQN 402
           A      MP   N V W +++   A +
Sbjct: 382 AHNYITTMPLEPNAVVWRTLLGACAMH 408


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/599 (35%), Positives = 330/599 (55%), Gaps = 48/599 (8%)

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198
           E+ +V + +  DR     Y     L  CA+      G+  H +I+   L  ++     L 
Sbjct: 37  ESSKVENVVHMDRVSNLHYL----LQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLI 92

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           +MY+K   +   R   D M  ++L+  N  I    +N + +K + L   MQ      +E 
Sbjct: 93  NMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQREVTPFNEF 152

Query: 259 TVSNILGACF-----------------------------------QTGRIDDAGRLFHVI 283
           T+S++L  C                                    +   I DA ++F  +
Sbjct: 153 TISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQMFESM 212

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ 343
            EK+ V W++M+ GY QNG  ++AL+LF+         D F+ISS VS+CA LA+L  G+
Sbjct: 213 PEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGK 272

Query: 344 VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF-NMMPTRNVVSWNSMINGYAQN 402
            VH  +   G   ++ V+S+LIDMY KCG   +A+ VF   +  R++V WN+MI+G+A++
Sbjct: 273 QVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWNAMISGFARH 332

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
               EA+ L++K+ Q    PD  T+VSVL+AC H  L E GQ +FD +   H ++PS+ H
Sbjct: 333 ALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLH 392

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV-------CAMKGDIKHGEMAA 515
           Y+CMI++LGR+  V KA DLI  +     S +W ++  +       C + G+I+  E+AA
Sbjct: 393 YSCMIDILGRAGLVQKAYDLIGRMSFNATSSMWGSVRGLSXLIKASCRIYGNIEFAEIAA 452

Query: 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575
           +HLFE+EP NAG +I+L+N+YAA  + ++VA  R  ++  +V+K    SWIEI NK+H F
Sbjct: 453 KHLFEMEPNNAGNHILLANIYAANKKSDEVARARKLLRETDVRKERGTSWIEIKNKIHSF 512

Query: 576 VSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
              +R HP+ +  Y +L  L+ +L++  +  +T   LHD +E  K   + +HSEKLA+ +
Sbjct: 513 TVGERNHPQIDDNYAKLDNLVVELKKLNYKVDTNNDLHDVEESRKHMLLGHHSEKLAITF 572

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            L+  P  + PIRI+KN+R+CGDCH FMK  S    R II+RD+NRFHHF  G CSC +
Sbjct: 573 GLVCLPTEI-PIRIIKNLRICGDCHTFMKLVSKFASREIIVRDTNRFHHFKDGLCSCGE 630



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 132/266 (49%), Gaps = 42/266 (15%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A+   +L+C +++    A  +++ +D N       F+   LLH YAK   +  A  +F+ 
Sbjct: 162 AFKCAILECMQLH----AFSIKAAIDSN------CFVXTALLHVYAKCSSIKDASQMFES 211

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP ++ ++W++++                               AG+   GF  EAL +F
Sbjct: 212 MPEKNAVTWSSMM-------------------------------AGYVQNGFHDEALLLF 240

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
              Q   F+   +   SA++ACA L  L  GKQ+H        G N++V ++L DMYAK 
Sbjct: 241 HNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKC 300

Query: 205 GEIDKARWLFDR-MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
           G I +A  +F+  +  R++V WN MISG+ ++   ++ + LF++MQ  G  PD+VT  ++
Sbjct: 301 GCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSV 360

Query: 264 LGACFQTGRIDDAGRLFHVIKEKDNV 289
           L AC   G  ++  + F ++  + N+
Sbjct: 361 LNACSHMGLHEEGQKYFDLMVRQHNL 386



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 151/345 (43%), Gaps = 38/345 (11%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI++   L++ +++   V   R   D+M ++  +  NT I         R+AL++  RMQ
Sbjct: 84  DILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRKALKLLIRMQ 143

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           ++     ++T  S L  CA    +    Q+H   +   +  N FV  AL  +YAK   I 
Sbjct: 144 REVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIK 203

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A  +F+ M  +N V+W+ M++GY++NG   + + LF   QL+G + D   +S+ + AC 
Sbjct: 204 DASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACA 263

Query: 268 ----------------------------------FQTGRIDDAGRLFH-VIKEKDNVCWT 292
                                              + G I +A  +F   ++ +  V W 
Sbjct: 264 GLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVEVRSIVLWN 323

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI G+ ++   ++A+ILF +M      PD  +  SV+++C+ +     GQ      V  
Sbjct: 324 AMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQKYFDLMVRQ 383

Query: 353 -GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSM 395
             +   +L  S +ID+  + G+   A+ +   M      S W S+
Sbjct: 384 HNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSFNATSSMWGSV 428


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/559 (37%), Positives = 317/559 (56%), Gaps = 39/559 (6%)

Query: 94   NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            N L+  +A+ G++++ R  F+ +  RD+VS+N  I G+  +    EA  +F RM  D   
Sbjct: 489  NTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIA 548

Query: 154  PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
            P + +  S L+ CA L  L +G+Q+H  +V   L   ++  ++L DMY K G I+ AR++
Sbjct: 549  PDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYV 608

Query: 214  FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
            F  M +R++VS N +I+GY +N    + IDLFQEMQ  GLNP E+T +++L AC      
Sbjct: 609  FSCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKL 667

Query: 268  ------------------------------FQTGRIDDAGRLFHVIK-EKDNVCWTTMIV 296
                                            + R  DA  LF   +  K  + WT +I 
Sbjct: 668  NLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIIS 727

Query: 297  GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            G+TQNG  E+AL L+ EM   + RPD+ + +SV+ +C+ LASL  G+++H     +G+D 
Sbjct: 728  GHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDS 787

Query: 357  DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN-VVSWNSMINGYAQNGQDLEALALYDKL 415
            D L  SA++DMY KCG    +  VF  M ++N V+SWNSMI G+A+NG    AL ++D++
Sbjct: 788  DELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEM 847

Query: 416  LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
                ++PD  TF+ VL+AC HA     G+  FD +   + I P LDH ACMI+LLGR   
Sbjct: 848  KHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGF 907

Query: 476  VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
            + +A + I  L  +PN++IW+TLL  C + GD   G  AA  L ELEP N+ PY++LSN+
Sbjct: 908  LKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNI 967

Query: 536  YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
            YAA G W++V S+R +M+ K ++K    SWI +  K + FV+ D+ HP    I+  L  L
Sbjct: 968  YAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDL 1027

Query: 596  IKKLQEAGFSPNTKLVLHD 614
            I  ++E G+   T  +L D
Sbjct: 1028 IALMKEDGYIAETDSLLED 1046



 Score =  257 bits (657), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 187/690 (27%), Positives = 313/690 (45%), Gaps = 124/690 (17%)

Query: 13  TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKS 72
           +L + G +  +  Y  ++  C R+ D++L K++   +    +E N+ F    L+  Y+K 
Sbjct: 172 SLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS-FCEGSLIDMYSKC 230

Query: 73  GKLFYARDLFDKMPLRDIISWNALLSAHARSG---------------------------- 104
           G L  AR +FD +   D +SW A+++ + + G                            
Sbjct: 231 GSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVI 290

Query: 105 -------SVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157
                   + D   LF +MP  + V++N  I+G   +G   EA+  F  M K   + T  
Sbjct: 291 TACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRS 350

Query: 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           T  S L+A A L  L  G  +H + +   L  NV+V ++L +MYAK  +++ A+ +FD +
Sbjct: 351 TLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDAL 410

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------- 267
           + RNLV WN M+ GY +NG   K + LF EM+  G  PDE T ++IL AC          
Sbjct: 411 DERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGR 470

Query: 268 -------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                     + G +++A + F  I+ +DNV W  +IVGY Q  
Sbjct: 471 QLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEE 530

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
            E++A  +F  M+ + + PD+ S++S++S CA L +L  G+ VH   V  G+   L   S
Sbjct: 531 DEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGS 590

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDL-EALALYDKLLQENLK 421
           +LIDMY KCG  + A  VF+ MP+R+VVS N++I GYAQN  DL EA+ L+ ++  E L 
Sbjct: 591 SLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN--DLVEAIDLFQEMQNEGLN 648

Query: 422 PDSFTFVSVLSAC-----------LHADLFERG---------------------QNHFDS 449
           P   TF S+L AC           +H  + +RG                     +   D 
Sbjct: 649 PSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADI 708

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKG 506
           + +      S   +  +I+   ++   ++A+ L + +     +P+   ++++L  C++  
Sbjct: 709 LFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILA 768

Query: 507 DIKHGEMAARHLFEL----EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN------ 556
            +  G M    +F +    + +     +   +MYA CG  +    +   M SKN      
Sbjct: 769 SLGDGRMIHSLIFHVGLDSDELTGSAVV---DMYAKCGDMKSSVQVFEEMGSKNDVISWN 825

Query: 557 --VKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
             +  FA   + E   K+   +   R  P+
Sbjct: 826 SMIVGFAKNGYAENALKIFDEMKHTRIRPD 855



 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 155/536 (28%), Positives = 267/536 (49%), Gaps = 75/536 (13%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           L + ++  YAK G + +A   F+++  RDI++WN++LS ++R GS++             
Sbjct: 118 LGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLE------------- 164

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                             + +  F  +Q     P  +T+   L++CA+L+D+  GKQ+H 
Sbjct: 165 ------------------QVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHC 206

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            ++      N F   +L DMY+K G +  AR +FD + + + VSW  MI+GY++ G P++
Sbjct: 207 GVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEE 266

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
            + +F++MQ LGL PD+V    ++ AC   GR+DDA  LF  +   + V W  MI G+ +
Sbjct: 267 ALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVK 326

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
            G + +A+  F  M    V+  + ++ SV+S+ A L +L +G +VH +A+  G++ ++ V
Sbjct: 327 RGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYV 386

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            S+LI+MY KC   + A  VF+ +  RN+V WN+M+ GYAQNG   + + L+ ++     
Sbjct: 387 GSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGF 446

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-------DHYA--------- 464
            PD FT+ S+LSAC   +  E G+    S    H    +L       D YA         
Sbjct: 447 WPDEFTYTSILSACACLECLEMGR-QLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEAR 505

Query: 465 ---------------CMINLLGRSSDVDKAVDLIKSL---PHKPNSLIWSTLLSVCAMKG 506
                           +I    +  D D+A ++ + +      P+ +  +++LS CA   
Sbjct: 506 QQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQ 565

Query: 507 DIKHGEMAARHLFELEP-----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            ++ GE    H F ++      + AG  ++  +MY  CG  E    + S M S++V
Sbjct: 566 ALEQGEQV--HCFLVKSGLQTCLYAGSSLI--DMYVKCGAIEAARYVFSCMPSRSV 617



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 184/440 (41%), Gaps = 97/440 (22%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R  K IH + +    G    + +A+ D+YAK G ++ A   F+++  R++++WN ++S Y
Sbjct: 98  RTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMY 157

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------------------ 274
            + G  ++ I  F  +Q  G++P++ T + +L +C +   ID                  
Sbjct: 158 SRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217

Query: 275 -----------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                            DA ++F  + + D V WT MI GY Q G  E+AL +F +M   
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            + PD+ +  +V+++C  L  L                                   DDA
Sbjct: 278 GLVPDQVAFVTVITACVGLGRL-----------------------------------DDA 302

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             +F  MP  NVV+WN MI+G+ + G D+EA+  +  + +  +K    T  SVLSA    
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362

Query: 438 DLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           +    G   H  +I    G+  ++   + +IN+  +   ++ A  +  +L  + N ++W+
Sbjct: 363 EALNYGLLVHAQAIK--QGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDER-NLVLWN 419

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
            +L   A  G                   A   + L +    CG W D  +  S + +  
Sbjct: 420 AMLGGYAQNG------------------YASKVMKLFSEMRGCGFWPDEFTYTSILSA-- 459

Query: 557 VKKFAAYSWIEIDNKVHKFV 576
               A    +E+  ++H F+
Sbjct: 460 ---CACLECLEMGRQLHSFI 476


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/660 (34%), Positives = 352/660 (53%), Gaps = 41/660 (6%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRA-LFDKMPIRDS 121
           N ++  YA+SG L  A  +FD+ P  ++ISWNAL++ ++ +  + + +  +FD+MP R+ 
Sbjct: 60  NSMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVIFDEMPRREE 119

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQ----LLDLRRGK 176
           VS+N  ++ +A  G    A   F RM + D    T    VS  N   +    L DL   +
Sbjct: 120 VSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPER 179

Query: 177 Q-------IHGKIVVGNLGG-----------NVFVRNALTDMYAKGGEIDKARWLFDRMN 218
                   I    V G L             N     A+   Y++ GE+ +AR + D + 
Sbjct: 180 DLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGEVVQARKMLDTLP 239

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278
           + +  +   MI  Y +NG  K   ++F  ++    NPD +  + ++ A      +D A  
Sbjct: 240 DPDQSTRTSMIVAYAQNGYIKDAREMFDSIK----NPDVIACNAMMEAYSSAQMLDHAKA 295

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  IK+K  V W TM+  Y Q G  ++A  +F+ +      P K    +VVS    + +
Sbjct: 296 MFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSI------PHK----NVVSHNVMVVA 345

Query: 339 LYHGQ-VVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
             H   +   + +   +D+ D +  +A++ M  + G   +A  +F  MP RNVVSWNS+I
Sbjct: 346 YAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWNSLI 405

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            G A  G  + A+     +  E  KPD  TF+ +L AC H  L E G  HF S+   HG+
Sbjct: 406 AGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGL 465

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
            P  +HY  M+++LGR+  +  A +L++++P  P+   W +LL  C    D+K G  AA 
Sbjct: 466 IPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAE 525

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFV 576
            L + +  ++GPY++L+NMY++ GR  D  ++R+ MK++ VKK    S I +D  +H+FV
Sbjct: 526 SLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFV 585

Query: 577 SEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYC 636
           + + +HP  + I  ELS+L + +++AG+ P+TK VLH   +EEK   + YHSEKLA+A+ 
Sbjct: 586 AGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSVLDEEKEVLLSYHSEKLAIAFA 645

Query: 637 LIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            I    G TPIRIMKN+RVC DCH   KF S ++ R II+RD  RFH+F  G CSC D W
Sbjct: 646 SIACEPG-TPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 704



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/477 (25%), Positives = 238/477 (49%), Gaps = 37/477 (7%)

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y+++G L  A+ +FD++P  +++SWN+L++  ++ G + +   +F +MP   S S+N
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA-CAQLLDLRRGKQIHGKIVV 184
           + I G+A  G    A  +F R        T   +V + NA      D R   +  G I  
Sbjct: 61  SMITGYAQSGDLAGATAMFDR--------TPEHNVISWNALITGYSDNRMIPEAKGVIFD 112

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                     NAL   YA+ G +  AR  F+RM   ++V+W  +I+   +NGQ ++   L
Sbjct: 113 EMPRREEVSWNALLSAYAQAGHVHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVL 172

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
           +     L    D V  + ++ A    G++ ++ R++ ++ E++ V  T MI+ Y+QNG+ 
Sbjct: 173 YD----LIPERDLVAWTALIQAYGVNGQLTESKRVYALMPERNRVSHTAMIIAYSQNGE- 227

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD-DLLVSSA 363
              ++   +ML     PD+ + +S++ + A+     +G +   + +   + + D++  +A
Sbjct: 228 ---VVQARKMLDTLPDPDQSTRTSMIVAYAQ-----NGYIKDAREMFDSIKNPDVIACNA 279

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           +++ Y    + D A  +F+ +  + +VSWN+M+  YAQ G   EA +++D +  +N+   
Sbjct: 280 MMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSH 339

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           +   V V++   + DL E  +  F S+     +T     +  M+ +L +   + +A +L 
Sbjct: 340 N---VMVVAYAHNMDLAE-ARRIFYSMDEKDTVT-----WTAMVAMLAQHGRLAEAQELF 390

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC 539
             +P++ N + W++L++  A  G   HG  A R+L+ +    A P +I    +  AC
Sbjct: 391 AKMPYR-NVVSWNSLIAGMASCG---HGMAAVRYLYVMRNEGAKPDHITFMGILIAC 443



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
           HN ++  YA +  L  AR +F  M  +D ++W A+++  A+ G + + + LF KMP R+ 
Sbjct: 339 HNVMVVAYAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNV 398

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           VS+N+ IAG A+ G    A++    M+ +  +P   T +  L AC+ +  +  G   H  
Sbjct: 399 VSWNSLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEG-WTHFT 457

Query: 182 IVVGNLGGNVFVRN--ALTDMYAKGGEIDKARWLFDRM 217
            + G+ G   +  +   + D+  + G++  AR L + M
Sbjct: 458 SMQGDHGLIPWREHYCRMVDVLGRAGQLGAARELLETM 495


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 222/648 (34%), Positives = 350/648 (54%), Gaps = 69/648 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F  +   + +S+NT I G A       AL ++  M      P  YT      +CA+  
Sbjct: 33  SVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAKSK 92

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG------------------------- 205
             + GKQIH +I+   L  ++ V  +L  MYA+ G                         
Sbjct: 93  AAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMIT 152

Query: 206 ------EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                  +DKA+ +FD +  +++VSWN MISGY + G+ K+ ++LF EM  + + PDE T
Sbjct: 153 GYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDEST 212

Query: 260 VSNILGACFQTGR----------IDDAG-------------------------RLFHVIK 284
           ++ +L  C  +G           ID+ G                          LF  ++
Sbjct: 213 MATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQ 272

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD + W T+I GY      ++AL++F EML     P+  ++ S++ +CA L ++  G+ 
Sbjct: 273 YKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRW 332

Query: 345 VHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +H      + G+  +  + ++LIDMY KCG  + A  VF+ +  +++ S N+MI G+A +
Sbjct: 333 IHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMH 392

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+   A  L  ++ ++ ++PD  TFV +LSAC HA L + G+  F S++  + I P L+H
Sbjct: 393 GRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEH 452

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+LLGRS    +A +LI S+  +P+ +IW +LL  C +  +++ GE+ A+ L ++E
Sbjct: 453 YGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIE 512

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G Y++LSN+YA   RW+DVA +R+ +  K +KK    S IEID+ VH+F+  D+ H
Sbjct: 513 PKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFH 572

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P+ + IY+ L ++   L E GF  +T  VL + +EE K  ++ YHSEKLA+A+ LI    
Sbjct: 573 PQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKP 632

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           G T +RI+KN+RVC +CH   K  S I  R II RD +RFHHF  G C
Sbjct: 633 G-TKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/449 (27%), Positives = 223/449 (49%), Gaps = 42/449 (9%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G +     +  L   C +    +  K++ + + L +       +H  L+  YA++G
Sbjct: 69  MISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQI-LKYGLTVDLHVHTSLISMYAQNG 127

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            +  A  +FD    RD++S+ A+++ +A  G++   + +FD++PI+D VS+N  I+G+A 
Sbjct: 128 IVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAE 187

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
            G  +EAL++F+ M K   +P + T  + L+ C    ++  G+QIH  I     G N+ +
Sbjct: 188 IGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
            NAL D+Y+K GE+++A  LF+ +  ++++SWN +I GY      K+ + +FQEM  LG 
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE 307

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-------DNVCWTTMIVGYTQNGKEED 306
            P++VT+ +IL AC   G I D GR  HV  +K       +    T++I  Y + G  E 
Sbjct: 308 TPNDVTMLSILPACAHLGAI-DIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEA 366

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL----------GVDD 356
           A  +F+ +L++            +SSC    ++  G  +HG+A             G++ 
Sbjct: 367 ANQVFDTILNKS-----------LSSC---NAMIFGFAMHGRADAAFDLLSRMKKDGIEP 412

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMINGYAQNGQDLEALAL 411
           D +    L+      G++D    +F  M     +      +  MI+   ++G   EA  L
Sbjct: 413 DDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEEL 472

Query: 412 YDKLLQENLKPDSFTFVSVLSAC-LHADL 439
            + +  E   PD   + S+L AC +H +L
Sbjct: 473 INSMTME---PDGVIWGSLLKACKIHKNL 498



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 48/335 (14%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307
           +GL+     +S +L  C  T        A  +F  I+E + + W TMI G+  +     A
Sbjct: 3   IGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISA 62

Query: 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           L L+  M+S  + P+ ++   +  SCAK  +   G+ +H + +  G+  DL V ++LI M
Sbjct: 63  LNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISM 122

Query: 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG--------------QDL------- 406
           Y + G+ +DA  VF+    R+VVS+ +MI GYA  G              +D+       
Sbjct: 123 YAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMI 182

Query: 407 ----------EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
                     EAL L++++++ ++KPD  T  +VLS C H+   E G+     I   HG 
Sbjct: 183 SGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN-HGF 241

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
             +L     +I+L  +  ++++A  L + L +K + + W+TL+   A    I H + A  
Sbjct: 242 GSNLKLVNALIDLYSKCGEMERAHGLFEGLQYK-DVISWNTLIGGYAY---INHHKEALL 297

Query: 517 HLFELEPINAGPY-IMLSNMYAAC--------GRW 542
              E+  +   P  + + ++  AC        GRW
Sbjct: 298 VFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRW 332



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 94/183 (51%), Gaps = 7/183 (3%)

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A +VF  +   N +SWN+MI G+A +   + AL LY  ++   L P+S+TF  +  +C  
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
           +   + G+     I   +G+T  L  +  +I++  ++  V+ A  +  +  H+ + + ++
Sbjct: 91  SKAAQEGKQIHAQILK-YGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHR-DVVSYT 148

Query: 497 TLLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
            +++  A +G++      A+ +F+  PI +   +  + + YA  GR+++   + + M   
Sbjct: 149 AMITGYASRGNMD----KAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 556 NVK 558
           +VK
Sbjct: 205 DVK 207


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 318/555 (57%), Gaps = 39/555 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  ++ +  +A+    +D   LFD+MP RD  S+N  I+ +   G   +AL++F  M+
Sbjct: 140 DVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMK 199

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
              F+P   T  + +++CA+LLDL RGK+IH ++V      + FV +AL DMY K G ++
Sbjct: 200 VSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLE 259

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC- 267
            A+ +F+++  +N+VSWN MI+GY   G  K CI+LF+ M   G+ P   T+S+IL AC 
Sbjct: 260 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 319

Query: 268 ----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTT 293
                                             F+ G I  A  +F  + + + V W  
Sbjct: 320 RSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNV 379

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI GY + G   +AL++F +M    V+PD  + +SV+ +C++LA L  G+ +H   +   
Sbjct: 380 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 439

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           ++ + +V  AL+DMY KCG  D+A  +FN +P R+ VSW SMI  Y  +GQ  EAL L++
Sbjct: 440 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 499

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+ Q + KPD  TF+++LSAC HA L + G  +F+ + A +G  P+++HY+C+I+LLGR 
Sbjct: 500 KMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRV 559

Query: 474 SDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
             + +A ++++  P  + +  + STL S C +   +  GE   R L E +P +   YI+L
Sbjct: 560 GRLREAYEILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIIL 619

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SNMYA+  +W++V  +R  +K   +KK    SWIE+  ++H FV ED++HP+ ++IYE +
Sbjct: 620 SNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECM 679

Query: 593 SKL---IKKLQEAGF 604
           S L   ++K Q   F
Sbjct: 680 SILASHVEKYQVLSF 694



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 146/502 (29%), Positives = 253/502 (50%), Gaps = 53/502 (10%)

Query: 69  YAKSGKLFYARDLFDKMPLRDIISW-NALLSAHARSGSVQDLRALFDKM--PIRDSVSYN 125
           Y K GKL + + +   + L++ I+   +L++ +      Q  + +F  +  P+ D   +N
Sbjct: 18  YLKQGKLIHQKIV--SLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL-DITLWN 74

Query: 126 TAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
             +A         E L+VF R+      +P  +T+ S L AC+ L  +  GK +H  ++ 
Sbjct: 75  GLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIK 134

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                +V V ++   MYAK    + A  LFD M  R++ SWN +IS Y ++GQP+K ++L
Sbjct: 135 SGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALEL 194

Query: 245 FQEMQLLGLNPDEVTVSNILGACF-----------------------------------Q 269
           F+EM++ G  PD VT++ ++ +C                                    +
Sbjct: 195 FEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK 254

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G ++ A  +F  I+ K+ V W +MI GY+  G  +  + LF  M  E +RP   ++SS+
Sbjct: 255 CGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSI 314

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + +C++  +L  G+ +HG  +   V+ D+ V+S+LID+Y KCG    A  VF  MP  NV
Sbjct: 315 LMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNV 374

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFD 448
           VSWN MI+GY + G  LEAL ++  + +  +KPD+ TF SVL AC    + E+G+  H  
Sbjct: 375 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 434

Query: 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
            I +   I   +     ++++  +   VD+A+ +   LP + + + W+++++        
Sbjct: 435 IIESKLEINEVV--MGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMIAAYG----- 486

Query: 509 KHGE-MAARHLFE-LEPINAGP 528
            HG+   A  LFE ++  +A P
Sbjct: 487 SHGQAFEALKLFEKMQQSDAKP 508



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 213/459 (46%), Gaps = 65/459 (14%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           +S L  C     L++GK IH KIV   L  N+ +  +L ++Y        A+ +F  + N
Sbjct: 7   LSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIEN 66

Query: 220 R-NLVSWNLMISGYLKNGQPKKCIDLFQE-MQLLGLNPDEVTVSNILGACFQTGRI---- 273
             ++  WN +++   KN    + +++F   +    L PD  T  ++L AC   GR+    
Sbjct: 67  PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 126

Query: 274 -------------------------------DDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
                                          +DA +LF  + E+D   W  +I  Y Q+G
Sbjct: 127 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
           + E AL LF EM     +PD  ++++V+SSCA+L  L  G+ +H + V  G   D  VSS
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSS 246

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+DMY KCG  + A  VF  +  +NVVSWNSMI GY+  G     + L+ ++ +E ++P
Sbjct: 247 ALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRP 306

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHG------ITPSLDHYACMINLLGRSSDV 476
              T  S+L AC  +   + G+        +HG      +   +   + +I+L  +  ++
Sbjct: 307 TLTTLSSILMACSRSVNLQLGK-------FIHGYIIRNRVEADIFVNSSLIDLYFKCGNI 359

Query: 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGE-MAARHLF-ELEPINAGP-YIMLS 533
             A ++ +++P K N + W+ ++S     G +K G  + A  +F ++      P  I  +
Sbjct: 360 GSAENVFQNMP-KTNVVSWNVMIS-----GYVKVGSYLEALVIFTDMRKAGVKPDAITFT 413

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572
           ++  AC +   +       K K +  F   S +EI+  V
Sbjct: 414 SVLPACSQLAVLE------KGKEIHNFIIESKLEINEVV 446



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 122/275 (44%), Gaps = 42/275 (15%)

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D   + S++ +C     L  G+++H K V LG+ +++ +  +LI++Y  C +   A  VF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 382 NMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSAC----- 434
             +    ++  WN ++    +N   +E L ++ +LL    LKPD+FT+ SVL AC     
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 435 ------LHADLFERG-----------------QNHFDSISAVHGITPSLD--HYACMINL 469
                 +H  + + G                  N F+    +    P  D   +  +I+ 
Sbjct: 122 VGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 470 LGRSSDVDKAVDLIKSLP---HKPNSLIWSTLLSVCAMKGDIKHGEMA----ARHLFELE 522
             +    +KA++L + +     KP+S+  +T++S CA   D++ G+       R  F L+
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
              +     L +MY  CG  E    +   ++ KNV
Sbjct: 242 GFVSSA---LVDMYGKCGCLEMAKEVFEQIQRKNV 273


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 339/611 (55%), Gaps = 48/611 (7%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR-FEP 154
           L  A+A SG +    AL  + P   +V Y +AI   +++G    AL + S M       P
Sbjct: 68  LQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGLHHAALALLSEMLLSHGLLP 127

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
           T +T  ++L AC     L  G+ +HG  V   L G  +V  AL  MYA+ G+   AR LF
Sbjct: 128 TAHTLSASLPACG---GLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAAAARVLF 184

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID 274
           D M                   QP               +P  V+V+ +L    + G +D
Sbjct: 185 DGM-------------------QP---------------DPHVVSVTAMLTCYAKMGLLD 210

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           DA  LF  +  KD +CW  M+ GYTQ+G+  +AL LF  ML   V PD+ S+   +S+ A
Sbjct: 211 DARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVA 270

Query: 335 KLASLYHGQVVHG---KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNV 389
           +L +   G+ +H     +    V  +  V +ALIDMY KCG  +DA  VF  +    R++
Sbjct: 271 QLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDI 330

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           V+WN+M+NGYA +G   EALA + +L  + L P   TF+ VL+AC H+ L + G+  F S
Sbjct: 331 VAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRS 390

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDI 508
           ++  +GI P ++HY CM++LLGR+  V++A +L++S+   KP++++W++LL+ C +  ++
Sbjct: 391 MAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNM 450

Query: 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEI 568
           + G+  A HL      N+G Y++LSNMYAA G W +V  +R+ M++  ++K    S +E+
Sbjct: 451 ELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEV 510

Query: 569 DNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK---LVLHDTQEEEKVKSIC 625
             +V +FV+ DR+HP    IY +L ++    +  G  P T+     L D     K +++ 
Sbjct: 511 GRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALA 570

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLALA+ LI  P G T I+I+KN+R C DCH  +K  S++ GR I+ RD NRFHHF
Sbjct: 571 VHSEKLALAFGLISTPPG-TAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHF 629

Query: 686 VGGNCSCKDNW 696
           V G+C+C D W
Sbjct: 630 VDGSCTCGDYW 640



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 173/339 (51%), Gaps = 20/339 (5%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKM-PLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           ++   LL  YA++G    AR LFD M P   ++S  A+L+ +A+ G + D R+LFD +P 
Sbjct: 162 YVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPS 221

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQI 178
           +D + +N  + G+   G   EAL++F RM +   EP + + V AL+A AQL     G+ +
Sbjct: 222 KDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWL 281

Query: 179 HGKIVVGN---LGGNVFVRNALTDMYAKGGEIDKARWLFDRM--NNRNLVSWNLMISGYL 233
           H  +   +   +  N  V  AL DMY K G ++ A  +F  +   +R++V+WN M++GY 
Sbjct: 282 HSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYA 341

Query: 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV---- 289
            +G  ++ +  F +++  GL P ++T   +L AC  +G +D+   LF  + E+  +    
Sbjct: 342 MHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKV 401

Query: 290 -CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
             +  M+    + G+ E+A  L   M     +PD    +S++++C    ++  GQ +   
Sbjct: 402 EHYGCMVDLLGRAGRVEEAFELVQSM--TRTKPDAVMWASLLAACRLHKNMELGQRIADH 459

Query: 349 AVVLGVDDD---LLVSSALIDMYCKCGVTDDAWTVFNMM 384
            V  G+ +    +L+S    +MY   G   +   V  MM
Sbjct: 460 LVANGLANSGTYVLLS----NMYAAAGNWREVGRVRAMM 494


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/634 (33%), Positives = 348/634 (54%), Gaps = 38/634 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G V+  R +FD M + D +S+N  IAG          L++F  M +D  E
Sbjct: 234 NALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVE 293

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S   A   L DL   K+IH   V      +V   N+L  MY+  G + +A  +
Sbjct: 294 PNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTV 353

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F RM  R+ +SW  MISGY KNG P K ++++  M++  ++PD+VTV++ L AC   GR+
Sbjct: 354 FSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRL 413

Query: 274 D-----------------------------------DAGRLFHVIKEKDNVCWTTMIVGY 298
           D                                    A  +F  + +KD + W++MI G+
Sbjct: 414 DVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGF 473

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             N K  +AL  F  ML+ DV+P+  +  + +++CA   SL  G+ +H   +  G+  + 
Sbjct: 474 CFNHKNFEALYYFRHMLA-DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEG 532

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V +AL+D+Y KCG T  AW  F    T++VVSWN M+ G+  +G    AL+ ++++L+ 
Sbjct: 533 YVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLET 592

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PD  TFV++L  C  A +  +G   F S++  + I P+L HYACM++LL R   + +
Sbjct: 593 GEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTE 652

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
             + I  +P  P++ +W  LL+ C +  +I+ GE+AA+ + ELEP +AG +++LS++YA 
Sbjct: 653 GYNFINRMPITPDAAVWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYAD 712

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W +V+ +R +M+ K ++     SW+E+   +H F+++D +HP+ + I + L  + ++
Sbjct: 713 AGMWAEVSKVRKTMRVKGLEHDYGCSWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYER 772

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++ +GF+P     L D +E  K   +C HSE+LA+A+ LI    G T I + KN   C  
Sbjct: 773 MKASGFAPVESYSLED-KEVSKDDVLCGHSERLAVAFGLINTTPG-TSICVTKNQYTCES 830

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
           CH  ++  S I+ R I +RD+  FHHF  G+CSC
Sbjct: 831 CHGILRMISKIVRREITVRDTKEFHHFRDGSCSC 864



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 222/464 (47%), Gaps = 74/464 (15%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTF-- 60
           A  +L+QA+  L S  +   E+AY  L   C      E   R   H D      + TF  
Sbjct: 74  AHGELQQALWLLESSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHAD----AAHGTFGL 129

Query: 61  -LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
            L N +L    + G+ ++A  +F KMP RD+ SWN ++                      
Sbjct: 130 RLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMV---------------------- 167

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                     G+   GF  EAL ++ RM      P  YT    L +C  + DL  G+++H
Sbjct: 168 ---------GGYGKAGFLEEALDLYHRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVH 218

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             ++   LG  V V NAL  MYAK G+++ AR +FD M+  + +SWN MI+G+ +N + +
Sbjct: 219 AHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLTDCISWNAMIAGHFENHECE 278

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------FQT--------- 270
             ++LF  M    + P+ +T++++  A                     F T         
Sbjct: 279 AGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLI 338

Query: 271 ------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
                 GR+ +A  +F  ++ +D + WT MI GY +NG  + AL ++  M   +V PD  
Sbjct: 339 QMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDV 398

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +++S +++CA L  L  G  +H  A   G    ++V++AL++MY K  + + A  VF  M
Sbjct: 399 TVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYM 458

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           P ++V+SW+SMI G+  N ++ EAL  +  +L  ++KP+S TF+
Sbjct: 459 PDKDVISWSSMIAGFCFNHKNFEALYYFRHMLA-DVKPNSVTFI 501



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 102/387 (26%), Positives = 185/387 (47%), Gaps = 41/387 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  ++  G + +   +F +M  RD++S+   I+G+   GF  +AL+V++ M+
Sbjct: 330 DVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFPDKALEVYALME 389

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P D T  SAL ACA L  L  G ++H           + V NAL +MYAK   I+
Sbjct: 390 VNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANALVEMYAKSKIIE 449

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           KA  +F  M +++++SW+ MI+G+  N +  + +  F+ M L  + P+ VT    L AC 
Sbjct: 450 KAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNSVTFIAALAACA 508

Query: 269 QTGRIDDAGRLF-HVIKE----------------------------------KDNVCWTT 293
            TG +     +  HV+++                                  KD V W  
Sbjct: 509 ATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNI 568

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVL 352
           M+ G+  +G  + AL  FNEML     PD+ +  +++  C++   +  G ++ H      
Sbjct: 569 MLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKY 628

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQNGQDLEALAL 411
            +  +L   + ++D+  + G   + +   N MP T +   W +++NG  +  +++E   L
Sbjct: 629 SIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNG-CRIHRNIELGEL 687

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHAD 438
             K++ E L+P+   +  +LS  L+AD
Sbjct: 688 AAKIVLE-LEPNDAGYHVLLSD-LYAD 712



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 10/308 (3%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           +R I+  NAL+  +A+S  ++    +F  MP +D +S+++ IAGF     + EAL  F  
Sbjct: 429 IRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRH 488

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M  D  +P   T ++AL ACA    LR GK+IH  ++   +    +V NAL D+Y K G+
Sbjct: 489 MLAD-VKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQ 547

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
              A   F     +++VSWN+M++G++ +G     +  F EM   G +PDEVT   +L  
Sbjct: 548 TGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCG 607

Query: 267 CFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
           C + G +     LFH + EK ++      +  M+   ++ G+  +     N M    + P
Sbjct: 608 CSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRM---PITP 664

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D     ++++ C    ++  G++   K V+    +D      L D+Y   G+  +   V 
Sbjct: 665 DAAVWGALLNGCRIHRNIELGELA-AKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVR 723

Query: 382 NMMPTRNV 389
             M  + +
Sbjct: 724 KTMRVKGL 731



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 4/179 (2%)

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           +G+ + AL L     S    PD+ +  ++   C    +  HG    G A        L +
Sbjct: 75  HGELQQALWLLE---SSPEPPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHGTFGLRL 131

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +A++ M  + G T  AW VF  MP R+V SWN M+ GY + G   EAL LY ++L    
Sbjct: 132 GNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGA 191

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479
           +PD +TF  VL +C        G+     +    G+   +D    ++ +  +  DV+ A
Sbjct: 192 RPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRF-GLGVEVDVLNALVTMYAKCGDVEAA 249


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/671 (32%), Positives = 361/671 (53%), Gaps = 56/671 (8%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           ++G+  +A  + D +     +S N+L+S +++ G + + R +FD    RD VS+N+ ++G
Sbjct: 126 RAGRAVHALAILDGLSSGVFVS-NSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSG 184

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLG 188
           +   G   E ++VF+ M++       +   S +  C+   D  +   + +HG ++   L 
Sbjct: 185 YVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLD 244

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ------PKKCI 242
            +VF+ +A+ DMYAK G + +A  LF  +   N+V +N MI+G+ +           + +
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            L+ E+Q  G+ P E T S++L AC                                   
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           F +G ++D  R F    + D V WT M+ G  QN   E AL LF+E L   ++PD F+IS
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+++CA LA    G+ +   A   G D   ++ ++ + MY + G  D A   F  M + 
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSW+++I+ +AQ+G   +AL  +D+++   + P+  TF+ VL+AC H  L + G  ++
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           ++++  +G++P++ H  C+++LLGR+  +  A   I +     + +IW +LL+ C +  D
Sbjct: 545 ETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRD 604

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           ++ G++ A  + ELEP ++  Y++L NMY   G     +  R  MK + VKK    SWIE
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIE 664

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI--C 625
           +   VH FV+ D++HPE+  IY +L +++ +++        KL   DT+  ++ +++  C
Sbjct: 665 LKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIE--------KLATTDTEISKREQNLMNC 716

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+A  +I  P    PIR+MKN+RVC DCH  MK  S    R IILRD  RFHHF
Sbjct: 717 -HSEKLAVALGMIHLPQS-APIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHF 774

Query: 686 VGGNCSCKDNW 696
             G+CSC D W
Sbjct: 775 RDGSCSCADYW 785



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 229/468 (48%), Gaps = 53/468 (11%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P   +   N LL+A+ R G     R L D+MP R++VS+N  I  ++ +G +  +L+  +
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           R ++   +   +++ +AL AC++   LR G+ +H   ++  L   VFV N+L  MY+K G
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           E+ +AR +FD    R+ VSWN ++SGY++ G  ++ + +F  M+  G+  +   + +++ 
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 266 AC-------------------------------------FQTGRIDDAGRLFHVIKEKDN 288
            C                                      + G + +A  LF  ++E + 
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 289 VCWTTMIVGYTQN----GKE--EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           V + TMI G+ +     GKE   +AL L++E+ S  ++P +F+ SSV+ +C     L  G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +HG+ +     +D  + SALID+Y   G  +D +  F   P  ++V+W +M++G  QN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
               +AL+L+ + L   LKPD FT  SV++AC    +   G+                D 
Sbjct: 399 ELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ-----IQCFATKSGFDR 453

Query: 463 YACM----INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  M    +++  RS DVD A    + +    + + WS ++S  A  G
Sbjct: 454 FTVMGNSCVHMYARSGDVDAATRRFQEM-ESHDVVSWSAVISCHAQHG 500



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
           T + N  +H YA+SG +  A   F +M   D++SW+A++S HA+ G  +D    FD+M  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 117 --PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL-- 172
              + + +++   +   ++ G   E L+ +  M K      DY     +  C  ++DL  
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTK------DYGLSPTIKHCTCVVDLLG 568

Query: 173 RRGKQIHGKIVVGN 186
           R G+    +  + N
Sbjct: 569 RAGRLADAEAFISN 582


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/435 (41%), Positives = 284/435 (65%), Gaps = 2/435 (0%)

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           +L A  + G +D+A ++F  I+EKD V W+ MI GY Q G  E A+ +F +M  E ++P+
Sbjct: 47  LLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPN 106

Query: 323 KFSISSVVSSCA-KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           +++ S ++++CA   A +  G+ +H  ++    ++ L VSSAL+ MY K G  + A+ VF
Sbjct: 107 EYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVF 166

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
                R++VSWNS+I+GYAQ+G   +AL +++++ ++NL+ D  TF+ V+SAC H  L  
Sbjct: 167 KRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLAN 226

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            GQ +FD +   H I P ++HY+CM++L GR+  + KA+++I  +P   ++ +W TLL+ 
Sbjct: 227 EGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAA 286

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
             +  +++ G++AA  L  L+P N   Y++L+NMYA+ G W++ A +R  M+ K VKK A
Sbjct: 287 SCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVA 346

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
            YSWIE+ NK + F++ D +HP +  IY +L +L  +L+ AG+ P+T  V  D  EE K 
Sbjct: 347 GYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKE 406

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
             +  HSE+LA+A+ LI  P G TP++I+KN+RVCGDCH  +K  S + GR I++RDSNR
Sbjct: 407 AILSQHSERLAIAFGLIGTPPG-TPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNR 465

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF GG CSC D W
Sbjct: 466 FHHFKGGLCSCGDYW 480



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 128/227 (56%), Gaps = 6/227 (2%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            ALL A+ + G+V +   +F ++  +D V+++  I G+A  G +  A+++F +M K++ +
Sbjct: 45  TALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIK 104

Query: 154 PTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           P +YT    +NACA     + +GKQ+H   +       + V +AL  MY+K G+I+ A  
Sbjct: 105 PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFE 164

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F R   R+LVSWN +ISGY ++G  +K +++F+EMQ   L  D VT   ++ AC  TG 
Sbjct: 165 VFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGL 224

Query: 273 IDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEM 314
            ++  R F ++ +  ++      ++ M+  Y + G    A+ + NEM
Sbjct: 225 ANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEM 271



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 121/276 (43%), Gaps = 41/276 (14%)

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           M ++  +P D+T+ + L A   +       ++H + +  N   +  V  AL D Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +D+A  +F R+  +++V+W+ MI GY + G  +  + +F +M    + P+E T S I+ A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 267 CF------------------------------------QTGRIDDAGRLFHVIKEKDNVC 290
           C                                     + G I+ A  +F   +E+D V 
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVS 176

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W ++I GY Q+G    AL +F EM  +++  D  +   V+S+C        GQ      V
Sbjct: 177 WNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMV 236

Query: 351 V-LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
               ++  +   S ++D+Y + G+   A  + N MP
Sbjct: 237 KDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMP 272



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M  E ++P+ F+ S+++++   ++       +H +A+         V +AL+D Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFE----MHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D+A  VF  +  +++V+W++MI GYAQ G    A+ ++ ++ +E +KP+ +TF  +++A
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINA 116

Query: 434 CLH--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           C    A + +  Q H  SI +      +L   + ++ +  +  D++ A ++ K    + +
Sbjct: 117 CAAPTAGVEQGKQLHAWSIKS--RFNNALCVSSALLTMYSKRGDIESAFEVFKRQRER-D 173

Query: 492 SLIWSTLLSVCAMKG 506
            + W++++S  A  G
Sbjct: 174 LVSWNSIISGYAQHG 188



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 97/200 (48%), Gaps = 9/200 (4%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA------KSGKLFYA 78
           A++ ++    ++ D E A R+   M     +PN  +  + +++  A      + GK  +A
Sbjct: 74  AWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNE-YTFSGIINACAAPTAGVEQGKQLHA 132

Query: 79  RDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSR 138
             +  +      +S +ALL+ +++ G ++    +F +   RD VS+N+ I+G+A  G+ R
Sbjct: 133 WSIKSRFNNALCVS-SALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGR 191

Query: 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNAL 197
           +AL+VF  MQ+   E    T +  ++AC        G++    +V   ++   +   + +
Sbjct: 192 KALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCM 251

Query: 198 TDMYAKGGEIDKARWLFDRM 217
            D+Y + G + KA  + + M
Sbjct: 252 VDLYGRAGMLVKAMEIINEM 271


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/641 (33%), Positives = 351/641 (54%), Gaps = 40/641 (6%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSV--SYNTAIAGFANKGFSREALQVFSRMQKD 150
           + +L +A+AR G++    +     P   S   ++N  +A  +  G    AL+VF R    
Sbjct: 47  FPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRAGSPGAALRVF-RALPS 105

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
              P   T   AL ACA+L DL   + +  +      G +VFV +AL  +Y++ G +  A
Sbjct: 106 SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDA 165

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270
             +FD M  ++ V+W+ M++G++  G+P + + ++  M+  G+  DEV +  ++ AC  T
Sbjct: 166 IRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLT 225

Query: 271 G-----------------------------------RIDDAGRLFHVIKEKDNVCWTTMI 295
           G                                     D A ++F ++  ++ V W  +I
Sbjct: 226 GNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALI 285

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355
            G+ QNG  ++AL LF EM +  ++PD  ++ S + +CA +  L  G+ +HG  ++  ++
Sbjct: 286 SGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHG-FILRRLE 344

Query: 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415
              ++ +A++DMY KCG  + A  +FN + +R++V WN+MI     +G   +ALAL+ +L
Sbjct: 345 FQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQEL 404

Query: 416 LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
            +  +KPD  TF S+LSA  H+ L E G+  FD +    GI P+  H  C+++LL RS  
Sbjct: 405 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGL 464

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535
           V++A +++ S+  +P   IW  LLS C     ++ GE  A+ + E +P + G   ++SN+
Sbjct: 465 VEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNL 524

Query: 536 YAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKL 595
           YAA  +W+ V  IR  MK    KK   YS IE+    H FV ED++HP+ + I + +SKL
Sbjct: 525 YAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKL 584

Query: 596 IKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRV 655
             ++++ G+ P T+ V HD  E+ K + + YHSE+LA+A+ L+    G T + I+KN+RV
Sbjct: 585 SFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPG-TRLVIIKNLRV 643

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CGDCH  +K+ S I+ R I++RD+ RFHHF  G CSC D W
Sbjct: 644 CGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/443 (24%), Positives = 198/443 (44%), Gaps = 70/443 (15%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           +T  +  C R+ D++ A+ ++       Y  +  F+ + LLH Y++ G +  A  +FD M
Sbjct: 114 FTLALTACARLGDLDAAEAVRVRAFAAGYGRDV-FVCSALLHVYSRCGAMGDAIRVFDGM 172

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P +D ++W                               +T +AGF + G   EAL ++S
Sbjct: 173 PRKDHVAW-------------------------------STMVAGFVSAGRPVEALGMYS 201

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           RM++      +   V  + AC    + R G  +HG+ +   +  +V +  +L DMYAK G
Sbjct: 202 RMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNG 261

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
             D AR +F  M  RN VSWN +ISG+ +NG   + +DLF+EM   GL PD   + + L 
Sbjct: 262 HFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALL 321

Query: 266 AC---------------------FQ-------------TGRIDDAGRLFHVIKEKDNVCW 291
           AC                     FQ              G ++ A +LF+ +  +D V W
Sbjct: 322 ACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLW 381

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
             MI     +G   DAL LF E+    ++PD  + +S++S+ +    +  G+    + + 
Sbjct: 382 NAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIT 441

Query: 352 -LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEAL 409
             G++        ++D+  + G+ ++A  +   M T   +  W ++++G   N +     
Sbjct: 442 EFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGE 501

Query: 410 ALYDKLLQENLKPDSFTFVSVLS 432
            +  K+L+   +P+    ++++S
Sbjct: 502 TIAKKILES--QPEDIGVLALVS 522



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 167/384 (43%), Gaps = 54/384 (14%)

Query: 14  LYSR----GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY 69
           +YSR    G A  E     ++  CT   +  +   +     L         +   L+  Y
Sbjct: 199 MYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRF-LRHGMRMDVVIATSLVDMY 257

Query: 70  AKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIA 129
           AK+G    AR +F  MP R+ +SWNAL+S                               
Sbjct: 258 AKNGHFDVARQVFRMMPYRNAVSWNALIS------------------------------- 286

Query: 130 GFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG 189
           GFA  G + EAL +F  M     +P     VSAL ACA +  L+ GK IHG  ++  L  
Sbjct: 287 GFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHG-FILRRLEF 345

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
              +  A+ DMY+K G ++ AR LF+++++R+LV WN MI+    +G     + LFQE+ 
Sbjct: 346 QCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELN 405

Query: 250 LLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIVGYTQN 301
             G+ PD  T +++L A   +G +++    F  +         EK  VC   ++    ++
Sbjct: 406 ETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLL---ARS 462

Query: 302 GKEEDALILFNEML-SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           G  E+A    NEML S    P      +++S C     L  G+ +  K ++    +D+ V
Sbjct: 463 GLVEEA----NEMLASMHTEPTIPIWVALLSGCLNNKKLELGETI-AKKILESQPEDIGV 517

Query: 361 SSALIDMYCKCGVTDDAWTVFNMM 384
            + + ++Y      D    +  +M
Sbjct: 518 LALVSNLYAAAKKWDKVREIRKLM 541


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/538 (36%), Positives = 310/538 (57%), Gaps = 35/538 (6%)

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           +F+ N L +MY K   ++ A  LFD+M  RN++SW  MIS Y K    +K ++L   M  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 251 LGLNPDEVTVSNILGAC--------------------------------FQTGRIDDAGR 278
             + P+  T S++L +C                                 + G  +DA  
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +   D + W ++I G+ QN + + AL LF  M       ++ +++SV+ +C  LA 
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G   H    ++  D DL++++AL+DMYCKCG  +DA  VFN M  R+V++W++MI+G
Sbjct: 276 LELGMQAH--VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            AQNG   EAL L++++     KP+  T V VL AC HA L E G  +F S+  ++GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             +HY CMI+LLG++  +D AV L+  +  +P+++ W TLL  C ++ ++   E AA+ +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
             L+P +AG Y +LSN+YA   +W+ V  IR+ M+ + +KK    SWIE++ ++H F+  
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP+   + ++L++LI +L   G+ P T  VL D + E+   S+ +HSEKLALA+ L+
Sbjct: 514 DNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 573

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P     IRI KN+R+CGDCH+F K AS +  R+I++RD  R+HHF  G CSC D W
Sbjct: 574 TLPIEKV-IRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 195/425 (45%), Gaps = 70/425 (16%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +A+D+L S G  A    Y++L+  C     V     +  H+  N + P   FL N L++ 
Sbjct: 47  KAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRP-MMFLVNVLINM 105

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y K                     +N L  AH           LFD+MP R+ +S+ T I
Sbjct: 106 YVK---------------------FNLLNDAHQ----------LFDQMPQRNVISWTTMI 134

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           + ++     ++AL++   M +D   P  YT+ S L +C  + D+R    +H  I+   L 
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR---MLHCGIIKEGLE 191

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VFVR+AL D++AK GE + A  +FD M   + + WN +I G+ +N +    ++LF+ M
Sbjct: 192 SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 249 QLLGLNPDEVTVSNILGACF---------------------------------QTGRIDD 275
           +  G   ++ T++++L AC                                  + G ++D
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLED 311

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F+ +KE+D + W+TMI G  QNG  ++AL LF  M S   +P+  +I  V+ +C+ 
Sbjct: 312 ALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSH 371

Query: 336 LASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
              L  G         + G+D        +ID+  K G  DDA  + N M    + V+W 
Sbjct: 372 AGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWR 431

Query: 394 SMING 398
           +++  
Sbjct: 432 TLLGA 436



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+   A+ G  +D  ++FD+M   D++ +N+ I GFA    S  AL++F RM+
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  F     T  S L AC  L  L  G Q H  IV      ++ + NAL DMY K G ++
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLE 310

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F++M  R++++W+ MISG  +NG  ++ + LF+ M+  G  P+ +T+  +L AC 
Sbjct: 311 DALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++D    F  +K+   +      +  MI    + GK +DA+ L NEM  E   PD 
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE---PDA 427

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            +  +++ +C    ++   +    K + L  +D
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 460



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 155/308 (50%), Gaps = 18/308 (5%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G  P    V+ ++    +   ++DA +LF  + +++ + WTTMI  Y++    + AL L 
Sbjct: 91  GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELL 150

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML ++VRP+ ++ SSV+ SC  ++ +   +++H   +  G++ D+ V SALID++ K 
Sbjct: 151 VLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKL 207

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA +VF+ M T + + WNS+I G+AQN +   AL L+ ++ +     +  T  SVL
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVL 267

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHK 489
            AC    L E G       + VH +    D      ++++  +   ++ A+ +   +  +
Sbjct: 268 RACTGLALLELGMQ-----AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC---GRWEDV 545
            + + WST++S  A  G   + + A +    ++     P YI +  +  AC   G  ED 
Sbjct: 323 -DVITWSTMISGLAQNG---YSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 546 ASIRSSMK 553
                SMK
Sbjct: 379 WYYFRSMK 386



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 63/378 (16%)

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           A+   + + S  +  D  + S ++  C    +++ G ++       G    + + + LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY K  + +DA  +F+ MP RNV+SW +MI+ Y++     +AL L   +L++N++P+ +T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 427 FVSVLSAC--------LHA------------------DLFERGQNHFDSISAV-HGITPS 459
           + SVL +C        LH                   D+F +     D++S     +T  
Sbjct: 165 YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGD 224

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV---CAMKGDIKHGEMAAR 516
              +  +I    ++S  D A++L K +         +TL SV   C     ++ G  A  
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 517 HLFELEP---INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           H+ + +    +N      L +MY  CG  ED   + + MK ++V  ++      I     
Sbjct: 285 HIVKYDQDLILNNA----LVDMYCKCGSLEDALRVFNQMKERDVITWSTM----ISGLAQ 336

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
              S            +E  KL ++++ +G  PN   ++        V   C H+  L  
Sbjct: 337 NGYS------------QEALKLFERMKSSGTKPNYITIV-------GVLFACSHAGLLED 377

Query: 634 AYCL---IKKPHGVTPIR 648
            +     +KK +G+ P+R
Sbjct: 378 GWYYFRSMKKLYGIDPVR 395



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 16/185 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  NAL+  + + GS++D   +F++M  RD ++++T I+G A  G+S+EAL++F RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 148 QKDRFEPTDYTHVSALNAC--AQLLD-----LRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +    +P   T V  L AC  A LL+      R  K+++G   V    G       + D+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG------CMIDL 404

Query: 201 YAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
             K G++D A  L + M    + V+W  ++       Q    +  +   +++ L+P++  
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVIALDPEDAG 462

Query: 260 VSNIL 264
              +L
Sbjct: 463 TYTLL 467


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/654 (33%), Positives = 348/654 (53%), Gaps = 69/654 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++FD +     + +NT   G A       AL+++  M      P  YT    L +CA+  
Sbjct: 58  SVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSX 117

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMY----------------------------- 201
             + G+Q+HG+++      ++++  +L  MY                             
Sbjct: 118 AFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALIT 177

Query: 202 --AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
             A  G I+ A  +FD +  +++VSWN  ISGY + G  K+ ++LF++M    + PDE T
Sbjct: 178 GYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDEST 237

Query: 260 VSNILGACFQTGRID-----------------------------------DAGRLFHVIK 284
           +  +L AC Q+G I+                                    A  LF  + 
Sbjct: 238 MVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLS 297

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            KD + W T+I GYT     ++AL+LF +ML    +P+  ++ S++S+CA L ++  G+ 
Sbjct: 298 NKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRW 357

Query: 345 VHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +H      + GV +   + ++LIDMY KCG  + A  VF+ M  R++ SWN+MI G+A +
Sbjct: 358 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMH 417

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+   A  ++ ++ +  ++PD  TFV +LSAC H+ + + G++ F S++  + + P L+H
Sbjct: 418 GRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEH 477

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+L G S    +A  +I ++  +P+ +IW +LL  C M G+++ GE  A++L ++E
Sbjct: 478 YGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIE 537

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G Y++LSN+YA   RW +VA  R+ +  K +KK    S IEID+ VH+F+  D+ H
Sbjct: 538 PENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 597

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P    IY  L ++   L+EAGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    
Sbjct: 598 PRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 657

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 658 G-TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 166/389 (42%), Gaps = 76/389 (19%)

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
           +M   GL+     +S +L  C  +   D    A  +F  I+E   + W TM  G+  +  
Sbjct: 24  QMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSD 83

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL L+  M+S  + P+ ++   ++ SCAK  +   GQ +HG+ +  G D DL + ++
Sbjct: 84  PVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTS 143

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSM---------------------------- 395
           LI MY + G  +DA  V +    R+VVS+ ++                            
Sbjct: 144 LISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSW 203

Query: 396 ---INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452
              I+GYA+ G   EAL L+ K+++ N++PD  T V+VLSAC  +   E G+     I+ 
Sbjct: 204 NAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWIND 263

Query: 453 VHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH------------------------ 488
            HG   +L     +I+L  +  +++ A  L + L +                        
Sbjct: 264 -HGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALL 322

Query: 489 ----------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF---ELEPINAGPYIMLS-- 533
                     KPN +   ++LS CA  G I  G     H++    L+ +     +  S  
Sbjct: 323 LFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWI--HVYIDKRLKGVTNASSLRTSLI 380

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAA 562
           +MYA CG  E    +  SM ++++  + A
Sbjct: 381 DMYAKCGDIEAAQQVFDSMLNRSLSSWNA 409



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/266 (20%), Positives = 120/266 (45%), Gaps = 24/266 (9%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD---AWTVFNMM 384
           S++  C  L SL   +++H + +  G+ +     S L++        D    A +VF+ +
Sbjct: 7   SLLHXCKTLQSL---RIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444
               ++ WN+M  G+A +   + AL LY  ++   L P+S+TF  +L +C  +  F+ GQ
Sbjct: 64  QEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQ 123

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM 504
                +    G    L  +  +I++  ++  ++ A  +     H+ + + ++ L++  A 
Sbjct: 124 QLHGQVLKF-GFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHR-DVVSYTALITGYAS 181

Query: 505 KGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK---- 559
           +G I+    +A  +F+  P+ +   +    + YA  G +++   +   M   NV+     
Sbjct: 182 RGXIE----SAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDEST 237

Query: 560 -------FAAYSWIEIDNKVHKFVSE 578
                   A    IE+  +VH ++++
Sbjct: 238 MVTVLSACAQSGSIELGRQVHSWIND 263


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 310/563 (55%), Gaps = 39/563 (6%)

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           +  G++IH ++ +         +N L  MYAK G +D+AR +F+ +  R +VSW+ MI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 232 YLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGAC----------------------- 267
           Y  +G+ ++ + LF  M+  G + P+ +T + +  AC                       
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 268 --------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313
                          + G +++A ++F  +   D   WT+MI   T+N +  +AL LF+ 
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M  E + P   +++SV+++CA   +L  G+ +H +    G    +L  +AL+DMY KCG 
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 240

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + +  VF  M TRN VSW +MI   AQ+GQ  EAL L+ ++  E +  D+ TF+ VL A
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L +     F S+   + I P+  HY   ++ +GR+  +  A +LI S+P  P +L
Sbjct: 301 CSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
            W TLL+ C +    +     A  L +L P ++  Y +L N+YAA GR+ D   +R  M 
Sbjct: 361 TWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMT 420

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
            + +KK    S+IE+ NKVH+FV+ DR HP  + I  EL KL  +++EAG+ PNTK VLH
Sbjct: 421 DRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
              EEEK + I  HSEKLA+A+ LI  P G TP+ I+KN+RVC DCH   K  + I+ R 
Sbjct: 481 AVNEEEKEQLIGLHSEKLAIAFGLIATPPG-TPLLIVKNLRVCSDCHAATKVIAKIMRRR 539

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           I++RD++RFHHF  G CSCKD W
Sbjct: 540 IVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 178/375 (47%), Gaps = 43/375 (11%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R  I+ N L+S +A+ G + + RA+F+ +  R  VS++  I  +A  G  +EAL +F RM
Sbjct: 18  RATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRM 77

Query: 148 QKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHG-KIVVGNL-GGNVFVRNALTDMYAKG 204
           + D R EP   T     NAC  + DL +G++IH   +  G L   N  + NAL +MY + 
Sbjct: 78  RNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRC 137

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +++AR +FD M++ +  SW  MI+   +N +  + ++LF  M L G+ P  VT++++L
Sbjct: 138 GSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVL 197

Query: 265 GACFQTG----------RIDDAG-------------------------RLFHVIKEKDNV 289
            AC  +G          R+D +G                         ++F  ++ +++V
Sbjct: 198 NACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSV 257

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGK 348
            WT MI    Q+G+ ++AL LF EM  E +  D  +   V+ +C+    +    +  H  
Sbjct: 258 SWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSM 317

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMING---YAQNGQ 404
                +          +D   + G   DA  + + MP     ++W +++N    ++Q  +
Sbjct: 318 VEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAER 377

Query: 405 DLEALALYDKLLQEN 419
             +   L  KL  E+
Sbjct: 378 ATKVAELLSKLAPED 392



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 10/262 (3%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           ++T ++  CT   ++  A  L   M+L    P +  L + +L+  A SG L   + +  +
Sbjct: 157 SWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLAS-VLNACACSGALKVGKQIHSR 215

Query: 85  MPLR----DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +        +++  ALL  +A+ GS++    +F  M  R+SVS+   IA  A  G   EA
Sbjct: 216 LDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEA 275

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ-IHGKIVVGNLGGNVFVRNALTD 199
           L++F  M  +       T +  L AC+    ++   +  H  +    +           D
Sbjct: 276 LELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALD 335

Query: 200 MYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
              + G +  A  L   M  +   ++W  +++    + Q ++   + +   L  L P++ 
Sbjct: 336 TIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAE--LLSKLAPEDS 393

Query: 259 TVSNILGACF-QTGRIDDAGRL 279
               +LG  +  TGR  D  R+
Sbjct: 394 MAYTLLGNVYAATGRYGDQMRV 415


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/671 (32%), Positives = 361/671 (53%), Gaps = 56/671 (8%)

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           ++G+  +A  + D +     +S N+L+S +++ G + + R +FD    RD VS+N+ ++G
Sbjct: 126 RAGRAVHALAILDGLSSGVFVS-NSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSG 184

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVGNLG 188
           +   G   E ++VF+ M++       +   S +  C+   D  +   + +HG ++   L 
Sbjct: 185 YVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLD 244

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ------PKKCI 242
            +VF+ +A+ DMYAK G + +A  LF  +   N+V +N MI+G+ +           + +
Sbjct: 245 SDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 243 DLFQEMQLLGLNPDEVTVSNILGAC----------------------------------- 267
            L+ E+Q  G+ P E T S++L AC                                   
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           F +G ++D  R F    + D V WT M+ G  QN   E AL LF+E L   ++PD F+IS
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           SV+++CA LA    G+ +   A   G D   ++ ++ + MY + G  D A   F  M + 
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447
           +VVSW+++I+ +AQ+G   +AL  +D+++   + P+  TF+ VL+AC H  L + G  ++
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507
           ++++  +G++P++ H  C+++LLGR+  +  A   I +     + +IW +LL+ C +  D
Sbjct: 545 ETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRD 604

Query: 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIE 567
           ++ G++ A  + ELEP ++  Y++L NMY   G     +  R  MK + VKK    SWIE
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIE 664

Query: 568 IDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSI--C 625
           +   VH FV+ D++HPE+  IY +L +++ +++        KL   DT+  ++ +++  C
Sbjct: 665 LKCGVHSFVAGDKSHPESSAIYTKLEEMLSRIE--------KLATTDTEISKREQNLMNC 716

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
            HSEKLA+A  +I  P    PIR+MKN+RVC DCH  MK  S    R IILRD  RFHHF
Sbjct: 717 -HSEKLAVALGMIHLPQS-APIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHF 774

Query: 686 VGGNCSCKDNW 696
             G+CSC D W
Sbjct: 775 RDGSCSCADYW 785



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 129/468 (27%), Positives = 229/468 (48%), Gaps = 53/468 (11%)

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P   +   N LL+A+ R G     R L D+MP R++VS+N  I  ++ +G +  +L+  +
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
           R ++   +   +++ +AL AC++   LR G+ +H   ++  L   VFV N+L  MY+K G
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
           E+ +AR +FD    R+ VSWN ++SGY++ G  ++ + +F  M+  G+  +   + +++ 
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 266 AC-------------------------------------FQTGRIDDAGRLFHVIKEKDN 288
            C                                      + G + +A  LF  ++E + 
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNV 278

Query: 289 VCWTTMIVGYTQN----GKE--EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           V + TMI G+ +     GKE   +AL L++E+ S  ++P +F+ SSV+ +C     L  G
Sbjct: 279 VMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFG 338

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +HG+ +     +D  + SALID+Y   G  +D +  F   P  ++V+W +M++G  QN
Sbjct: 339 KQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQN 398

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
               +AL+L+ + L   LKPD FT  SV++AC    +   G+                D 
Sbjct: 399 ELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQ-----IQCFATKSGFDR 453

Query: 463 YACM----INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           +  M    +++  RS DVD A    + +    + + WS ++S  A  G
Sbjct: 454 FTVMGNSCVHMYARSGDVDAATRRFQEM-ESHDVVSWSAVISCHAQHG 500



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 12/134 (8%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM-- 116
           T + N  +H YA+SG +  A   F +M   D++SW+A++S HA+ G  +D    FD+M  
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 117 --PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL-- 172
              + + +++   +   ++ G   E L+ +  M K      DY     +  C  ++DL  
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNK------DYGLSPTIKHCTCVVDLLG 568

Query: 173 RRGKQIHGKIVVGN 186
           R G+    +  + N
Sbjct: 569 RAGRLADAEAFISN 582


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/638 (34%), Positives = 340/638 (53%), Gaps = 71/638 (11%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N   A   +KG  REA + F  + +   EP  ++++  L AC  L  +  GKQ+H  I  
Sbjct: 42  NEQFATLCSKGHIREAFESF--LSEIWAEPRLFSNL--LQACIPLKSVSLGKQLHSLIFT 97

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
                + F+ N L ++Y+K GE+  A  LFDRM  RN++S N+MI  YL  G  +   +L
Sbjct: 98  SGCSSDKFISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNL 157

Query: 245 FQEM-------------------------------QLLGLNPDEVTVSNILGAC------ 267
           F EM                                 L   PDE ++ ++L  C      
Sbjct: 158 FDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGAL 217

Query: 268 -----------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                                         + G + D  R+ + + +   V W T++ G 
Sbjct: 218 LAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGK 277

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  E  L  +  M     RPDK +  SV+SSC++LA L  G+ +H +AV  G   ++
Sbjct: 278 AQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEV 337

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+L+ MY +CG   D+   F     R+VV W+SMI  Y  +GQ  EA+ L++++ QE
Sbjct: 338 SVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQE 397

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
           NL  +  TF+S+L AC H  L ++G   FD +   +G+   L HY C+++LLGRS  +++
Sbjct: 398 NLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEE 457

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A  +I+S+P K +++IW TLLS C +  + +     A  +  ++P ++  Y++L+N+Y++
Sbjct: 458 AEAMIRSMPVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSS 517

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
             RW++V+ +R +MK K VKK    SW+E+ N+VH+F   D  HP+   I + L +L  +
Sbjct: 518 ANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSE 577

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGD 658
           ++  G+ P+T  VLHD   EEK + + +HSEKLA+A+ L+  P GV PIR+MKN+RVC D
Sbjct: 578 IKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGV-PIRVMKNLRVCSD 636

Query: 659 CHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           CH+ +K+ S+I    II+RDS+RFHHF  G CSC D W
Sbjct: 637 CHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 214/435 (49%), Gaps = 43/435 (9%)

Query: 3   AKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT--F 60
           +K  +R+A ++  S    A    ++ L+  C  +  V L K+L S   L F    ++  F
Sbjct: 50  SKGHIREAFESFLSE-IWAEPRLFSNLLQACIPLKSVSLGKQLHS---LIFTSGCSSDKF 105

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           + N LL+ Y+K G+L  A  LFD+MP R+I+S N ++ A+   G+++  + LFD+MP R+
Sbjct: 106 ISNHLLNLYSKFGELQAAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRN 165

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
             ++N  + G      + EAL +FSRM +  F P +Y+  S L  CA L  L  G+Q+H 
Sbjct: 166 VATWNAMVTGLTKFEMNEEALLLFSRMNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHA 225

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
            ++      N+ V  +L  MY K G +     + + M + +LV+WN ++SG  + G  + 
Sbjct: 226 YVMKCGFECNLVVGCSLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEG 285

Query: 241 CIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------------- 267
            +D +  M++ G  PD++T  +++ +C                                 
Sbjct: 286 VLDQYCMMKMAGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVS 345

Query: 268 --FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS 325
              + G + D+ + F   KE+D V W++MI  Y  +G+ E+A+ LFNEM  E++  ++ +
Sbjct: 346 MYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEIT 405

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
             S++ +C+       G  +    V   G+   L   + L+D+  + G  ++A  +   M
Sbjct: 406 FLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSM 465

Query: 385 PTR-NVVSWNSMING 398
           P + + + W ++++ 
Sbjct: 466 PVKADAIIWKTLLSA 480


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 174/371 (46%), Positives = 254/371 (68%), Gaps = 1/371 (0%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           ++ ++ +CA +A+L  G+ VH   + +G + D+ VS+ L+DMY KCG  +DA  VF+ + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
             +V SWN+MI+G AQ+G   EA+ L++++LQ  +KP+  TFV VLS C HA L + G+N
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           +FDS++  HGI+P  +HY+CM++L GR+  +D+A++ I  +P +PN+ +W +LL  C + 
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSW 565
           G+I+  E A   L EL P N G Y++LSN+YAA GRW+D   +R  MK ++VKK    SW
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 566 IEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSIC 625
           IE+ NKVH F+  D +HP+ E IYE L  L  +++ AG+ PNT  VLHD +EE+K   + 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 626 YHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHF 685
           +HSEKLA+A+ +I  P G T IR++KN+RVCGDCH   KF S I+ R I+LRD++RFHHF
Sbjct: 301 HHSEKLAIAFGIISTPPGTT-IRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHF 359

Query: 686 VGGNCSCKDNW 696
             G CSC D W
Sbjct: 360 KDGQCSCGDYW 370



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 9/232 (3%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L ACA +  L +GKQ+H  I+      +V V N L DMY K G I+ A+ +F ++   ++
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
            SWN MISG  ++G  K+ + LF++M   G+ P+++T   +L  C   G +D+    F  
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDS 124

Query: 283 IKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           +     +      ++ M+  + + G  ++AL   N+M    V P+     S++ +C    
Sbjct: 125 MTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQM---PVEPNASVWGSLLGACRVHG 181

Query: 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           ++   +    + + L   ++      L ++Y   G  DDA  V  MM  R+V
Sbjct: 182 NIELAERAVEQLIEL-TPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSV 232



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 97/206 (47%), Gaps = 15/206 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L+  + + G ++D + +F K+   D  S+N  I+G A  G  +EA+ +F +M 
Sbjct: 32  DVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDVASWNAMISGLAQHGCGKEAVLLFEQML 91

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKGGEI 207
           +   +P   T V  L+ C+    +  G+     +   + +       + + D++ + G +
Sbjct: 92  QTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDSMTRDHGISPKAEHYSCMVDLFGRAGCL 151

Query: 208 DKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDE----VTV 260
           D+A    ++M    N   W  ++     +G     I+L +    QL+ L P+     V +
Sbjct: 152 DEALNFINQMPVEPNASVWGSLLGACRVHGN----IELAERAVEQLIELTPENPGTYVLL 207

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEK 286
           SNI  A    GR DDAG++  ++K++
Sbjct: 208 SNIYAA---AGRWDDAGKVRKMMKDR 230


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 304/542 (56%), Gaps = 36/542 (6%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           NV   N L   Y K G++  AR LFD M  RN+ +WN M++G    G  ++ +  F +M+
Sbjct: 168 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 227

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
             G++PDE  + ++   C                                    + G + 
Sbjct: 228 REGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQ 287

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +   +  ++     V   T+I G TQNG  E AL  F  M S  V  D  +  S +SSC+
Sbjct: 288 EGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCS 347

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            LA+L  GQ +HG+ +  GVD  + V + L+ MY +CG   D+  VF      +    ++
Sbjct: 348 DLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSA 407

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI+ Y  +G   +A+ L+ +++    +P   TF+++L AC H+ L E G + F+ ++  +
Sbjct: 408 MISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTY 467

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G+ PS+ HY C+++LLGRS  +D+A  LI S+P  P+ +IW TLLS C  + +    E  
Sbjct: 468 GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERI 527

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A+ + EL+P ++  Y++LSN+ A   RW DV+ +R +M+  NV+K    SW+E+   +H+
Sbjct: 528 AKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQ 587

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F + D +HP  + I E L +++ K+++ G+SP+  +VLHD ++EEK  S+ +HSEKLA+A
Sbjct: 588 FCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIA 647

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           +  +  P GV PIR+MKN+RVC DCHL +K  S + GR I++RD +RFHHF  G CSC+D
Sbjct: 648 FAFLSLPEGV-PIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 706

Query: 695 NW 696
            W
Sbjct: 707 YW 708



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 173/375 (46%), Gaps = 37/375 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F  N L+  YA  G L  AR+LF+++P R+++SWN L   + ++G +   R LFD+MP R
Sbjct: 139 FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 198

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           +  ++N  +AG  N GF  E+L  F  M+++   P ++   S    CA L D+  G+Q+H
Sbjct: 199 NVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 258

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +V   L  ++ V ++L  MY + G + +   +   + + ++VS N +I+G  +NG  +
Sbjct: 259 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 318

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
             ++ F  M+ +G+  D VT  + + +C                                
Sbjct: 319 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 378

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G + D+ R+F      D    + MI  Y  +G  + A+ LF +M++    P   
Sbjct: 379 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 438

Query: 325 SISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +  +++ +C+       G           G+   +   + ++D+  + G  D+A  +   
Sbjct: 439 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 498

Query: 384 MP-TRNVVSWNSMIN 397
           MP T + V W ++++
Sbjct: 499 MPLTPDGVIWKTLLS 513



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 77/380 (20%), Positives = 134/380 (35%), Gaps = 109/380 (28%)

Query: 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           +G  +   P + + L   + L+ L+ D V   +       TGR+ DA R     +    V
Sbjct: 46  AGDGRGAAPVRALSLRSMVGLVALSLDTVATKDEFVRLCATGRLRDALR-----RPFRGV 100

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W+             DA  LF+ +                 +C  L  L     +H  A
Sbjct: 101 LWS-------------DAARLFSHLFR---------------ACRALRPLRQ---LHAFA 129

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ----- 404
              G   D   ++ L+  Y   G    A  +F  +P RNV+SWN +  GY +NG      
Sbjct: 130 ATSGAATDRFTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGAR 189

Query: 405 --------------------------DLEALALYDKLLQENLKPDSFTFVSVLSAC---- 434
                                     D E+L  +  + +E + PD F   SV   C    
Sbjct: 190 KLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLR 249

Query: 435 -------LHADLFERGQNH-----------------FDSISAVHGITPSLDHYACMINLL 470
                  +HA +   G +                       AV  + PSL   +C   + 
Sbjct: 250 DVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIA 309

Query: 471 GRS--SDVDKAVD---LIKSLPHKPNSLIWSTLLSVCA-----MKGDIKHGEMAARHLFE 520
           GR+   D + A++   +++S+    + + + + +S C+      +G   HG++    + +
Sbjct: 310 GRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDK 369

Query: 521 LEPINAGPYIMLSNMYAACG 540
           + P+       L +MY+ CG
Sbjct: 370 VVPV----MTCLVHMYSRCG 385


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/616 (34%), Positives = 355/616 (57%), Gaps = 52/616 (8%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           NAL   +A SG +   + LFD++P+  +D+V + T ++ F+  G    ++++F  M++ R
Sbjct: 47  NALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVNSMKLFVEMRRKR 106

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
            E  D + V     CA+L DL   +Q HG  V   +  +V V NAL DMY K G + + +
Sbjct: 107 VEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVK 166

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271
            +F+ +  +++VSW +++                             TV    G   + G
Sbjct: 167 RIFEELEEKSVVSWTVVLD----------------------------TVVKWEG--LERG 196

Query: 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-SISSVV 330
           R      +FH + E++ V WT M+ GY   G   + L L  EM+        F ++ S++
Sbjct: 197 R-----EVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 331 SSCAKLASLYHGQVVH----GKAVVLGVD---DDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           S+CA+  +L  G+ VH     K +++G +   DD++V +AL+DMY KCG  D +  VF +
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRL 311

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  RNVV+WN++ +G A +G+    + ++ ++++E +KPD  TF +VLSAC H+ + + G
Sbjct: 312 MRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEG 370

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
              F S+   +G+ P +DHYACM++LLGR+  +++A  L++ +P  PN ++  +LL  C+
Sbjct: 371 WRCFHSLR-FYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCS 429

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           + G ++  E   R L ++ P N    I++SNMY A GR +    +R S++ + ++K    
Sbjct: 430 VHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGL 489

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN-TKLVLHDTQE-EEKV 621
           S I +++ VH+F S DR+HP T+ IY +L+++I++++ AG+ P+ + LV H   + EEK 
Sbjct: 490 SSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKE 549

Query: 622 KSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
           +++C HSEKLA+ + L++ KP   TP+ + KN+R+C DCH  MK  S +  R II+RD N
Sbjct: 550 QALCCHSEKLAVCFGLLETKPS--TPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRN 607

Query: 681 RFHHFVGGNCSCKDNW 696
           RFH F GG+CSC D W
Sbjct: 608 RFHQFKGGSCSCSDYW 623



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 170/325 (52%), Gaps = 24/325 (7%)

Query: 33  CTRVNDVELAKRLQSH-MDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII 91
           C ++ D+  A+  Q H + +      +  + N L+  Y K G +   + +F+++  + ++
Sbjct: 121 CAKLEDLGFAQ--QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVV 178

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           SW  +L    +   ++  R +F +MP R++V++   +AG+   GF+RE L++ + M    
Sbjct: 179 SWTVVLDTVVKWEGLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRC 238

Query: 152 FEPTDY-THVSALNACAQLLDLRRGKQIH-----GKIVVGNLGG--NVFVRNALTDMYAK 203
               ++ T  S L+ACAQ  +L  G+ +H      ++++G      +V V  AL DMYAK
Sbjct: 239 GHGLNFVTLCSMLSACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAK 298

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G ID +  +F  M  RN+V+WN + SG   +G+ +  ID+F +M +  + PD++T + +
Sbjct: 299 CGNIDSSMNVFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPQM-IREVKPDDLTFTAV 357

Query: 264 LGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
           L AC  +G +D+  R FH ++    E     +  M+    + G  E+A IL  EM    V
Sbjct: 358 LSACSHSGIVDEGWRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREM---PV 414

Query: 320 RPDKFSISSVVSSCAKLASLYHGQV 344
            P++  + S++ SC+      HG+V
Sbjct: 415 PPNEVVLGSLLGSCS-----VHGKV 434



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 183/436 (41%), Gaps = 109/436 (25%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPL--RDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++L N L  FYA SG++  A+ LFD++PL  +D + W  LLS+ +R G + +        
Sbjct: 43  SYLSNALFQFYASSGEMVTAQKLFDEIPLSEKDNVDWTTLLSSFSRYGLLVN-------- 94

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                                  ++++F  M++ R E  D + V     CA+L DL   +
Sbjct: 95  -----------------------SMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQ 131

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEI----------------------------- 207
           Q HG  V   +  +V V NAL DMY K G +                             
Sbjct: 132 QGHGVAVKMGVLTSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWE 191

Query: 208 --DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNIL 264
             ++ R +F  M  RN V+W +M++GYL  G  ++ ++L  EM    G   + VT+ ++L
Sbjct: 192 GLERGREVFHEMPERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSML 251

Query: 265 GACFQT------------------------------------------GRIDDAGRLFHV 282
            AC Q+                                          G ID +  +F +
Sbjct: 252 SACAQSGNLVVGRWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRL 311

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +++++ V W  +  G   +GK    + +F +M+ E V+PD  + ++V+S+C+    +  G
Sbjct: 312 MRKRNVVTWNALFSGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEG 370

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQ 401
                     G++  +   + ++D+  + G+ ++A  +   MP   N V   S++   + 
Sbjct: 371 WRCFHSLRFYGLEPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSV 430

Query: 402 NGQDLEALALYDKLLQ 417
           +G+   A  +  +L+Q
Sbjct: 431 HGKVEIAERIKRELIQ 446


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/648 (31%), Positives = 348/648 (53%), Gaps = 43/648 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+   N+L++ + + G     R +FD MP R+ VS+   + G+ N GF  E L++F  M
Sbjct: 67  KDVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSM 126

Query: 148 Q-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
              D   P ++       +C+    +  GKQ HG  +   L  + FVRN L  MY+    
Sbjct: 127 VFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSG 186

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT------- 259
             +A  + D +   +L  ++  +SGYL+ G  K+  ++ + M    L  D +T       
Sbjct: 187 NGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRL 246

Query: 260 -------------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDN 288
                                          + N+ G C   G++  A R+F     ++ 
Sbjct: 247 CSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKC---GKVLYAQRVFDNTHAQNI 303

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V  TT++  Y Q+   E+AL LF++M +++V P++++ +  ++S A+L+ L HG ++HG 
Sbjct: 304 VLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLLHGL 363

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +  G  + ++V +AL++MY K G  +DA   F+ M  R++V+WN+MI G++ +G   E 
Sbjct: 364 VLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREG 423

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L  +D+++     P+  TF+ VL AC H    E+G  +F+ +     + P L HY C++ 
Sbjct: 424 LEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVG 483

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LL ++     A D +++ P + + + W  LL+ C ++ + + G+  A +     P ++G 
Sbjct: 484 LLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGV 543

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++LSN++A    WE VA +RS M  + VKK    SWI I N+ H F++E+  HPE  +I
Sbjct: 544 YVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQHPEITLI 603

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
           Y ++ +++ K++  G+SP+   V HD  EE++  ++ YHSEKLA+AY L+K P   +P+ 
Sbjct: 604 YAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPEN-SPLY 662

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+R+C DCH  +K  S I  R I++RDSNRFHHF  G CSC D W
Sbjct: 663 VTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 106/223 (47%), Gaps = 11/223 (4%)

Query: 305 EDALILFNEMLSEDVRPDK--FSI---SSVVSSCAKLASLYHGQVVHGKAVVLGVDD--- 356
           E  L+ ++++ S   +P K  F I   + ++  CA  + L  G+ +HG  +V        
Sbjct: 8   EQRLLKWDKLASLVPKPKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAK 67

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           D+   ++LI++Y KCG T  A  VF++MP RNVVSW +M+ GY  +G D E L L+  ++
Sbjct: 68  DVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMV 127

Query: 417 -QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
             +  +P+ F    V  +C  +   E G+  F       G+         ++ +    S 
Sbjct: 128 FSDESRPNEFVATVVFKSCSSSGRIEEGK-QFHGCFLKSGLMSHEFVRNTLVYMYSLCSG 186

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             +A+ ++  LP+   S ++S+ LS     G  K G    R +
Sbjct: 187 NGEAIRVLDDLPYCDLS-VFSSALSGYLECGAFKEGAEVLRRM 228



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   + N L++ YAKSG +  AR  F  M  RDI++WN                      
Sbjct: 371 NHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWN---------------------- 408

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG 175
                    T I GF++ G  RE L+ F RM      P   T +  L AC+ +  + +G
Sbjct: 409 ---------TMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQG 458


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/435 (43%), Positives = 282/435 (64%), Gaps = 7/435 (1%)

Query: 265 GACFQTGRIDDAGRLFHVIK--EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           GAC   G  + A R+F  I   E++ V W +++ G+  NG+  + L +F E L  D+ PD
Sbjct: 166 GAC---GLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPD 222

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
            F+I SV+++CA++ +L  G+ VH  A  +G+  +  V +ALID+Y KCG  +DAW VF 
Sbjct: 223 GFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFE 282

Query: 383 MMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
            M   R VVSW S+I G A NG   +AL L+  + +E L P   T V VL AC H  L +
Sbjct: 283 EMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVD 342

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G  +F+ +   +GI P ++H  CM++LLGR+  V++A + I ++P +PN+++W TLL  
Sbjct: 343 DGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGA 402

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           CAM   ++ GE A   L EL+P ++G Y++LSN+YAA GRW D   +R +M +  V+K  
Sbjct: 403 CAMHKKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNP 462

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKV 621
            +S +E+ N V++FV  DR+HPE++ IY+ L+++ ++L+  G+ P T  VL D +EEEK 
Sbjct: 463 GHSLVELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKE 522

Query: 622 KSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNR 681
            ++ YHSE+LA+A+ L+K   G +PIRI+KN+R+CGDCHL +K  S +  R II+RD +R
Sbjct: 523 TALNYHSERLAIAFALLKSLPG-SPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSR 581

Query: 682 FHHFVGGNCSCKDNW 696
           FHHF GG CSCKD W
Sbjct: 582 FHHFKGGECSCKDYW 596



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 163/372 (43%), Gaps = 44/372 (11%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  L+  CTR+  +   + L +    N       F+ N L+H Y   G    A  +FD++
Sbjct: 123 YPPLLQACTRLLALREGESLHAEAAKNGLV-ALVFVKNSLVHHYGACGLFESAHRVFDEI 181

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFS 145
           P+ +                             R+ VS+N+ + GFA  G   E L +F 
Sbjct: 182 PVLE-----------------------------RNLVSWNSVMNGFAANGRPNEVLTIFR 212

Query: 146 RMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
              +    P  +T VS L ACA++  L  G+++H       L GN  V NAL D+YAK G
Sbjct: 213 ETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCG 272

Query: 206 EIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
            ++ A  +F+ M   R +VSW  +I G   NG  K  ++LF  M+   L P ++T+  +L
Sbjct: 273 GVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVL 332

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDV 319
            AC   G +DD  R F+ +++K  +         M+    + G+ E+A    N + +  V
Sbjct: 333 YACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEA---HNYITTMPV 389

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDA 377
            P+     +++ +CA    L  G+    + V L  G   D ++ S   ++Y   G   DA
Sbjct: 390 EPNAVVWRTLLGACAMHKKLELGEAAWARLVELDPGHSGDYVLLS---NLYAAVGRWADA 446

Query: 378 WTVFNMMPTRNV 389
             +   M T  V
Sbjct: 447 HVLRKTMATHGV 458



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 143/333 (42%), Gaps = 55/333 (16%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLRR 174
           +P  D  S NT +   A+    R AL +  R    R  P D +T+   L AC +LL LR 
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRR----RLAPPDTHTYPPLLQACTRLLALRE 138

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN--NRNLVSWNLMISGY 232
           G+ +H +     L   VFV+N+L   Y   G  + A  +FD +    RNLVSWN +++G+
Sbjct: 139 GESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGF 198

Query: 233 LKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN---- 288
             NG+P + + +F+E     L PD  T+ ++L AC + G +   GR  HV   K      
Sbjct: 199 AANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGAL-TLGRRVHVFASKVGLVGN 257

Query: 289 ---------------------------------VCWTTMIVGYTQNGKEEDALILFNEML 315
                                            V WT++IVG   NG  +DAL LF  M 
Sbjct: 258 SHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDALELFGLME 317

Query: 316 SEDVRPDKFSISSVVSSCAKLASL-----YHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
            E + P   ++  V+ +C+    +     Y  ++     +  G++        ++D+  +
Sbjct: 318 RERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEH----LGCMVDLLGR 373

Query: 371 CGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQN 402
            G  ++A      MP   N V W +++   A +
Sbjct: 374 AGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 131/278 (47%), Gaps = 9/278 (3%)

Query: 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
           ++ + D     T++     +     AL L    L+    PD  +   ++ +C +L +L  
Sbjct: 82  LLPDPDPFSLNTVLRIAASSAHPRIALALHRRRLAP---PDTHTYPPLLQACTRLLALRE 138

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGY 399
           G+ +H +A   G+   + V ++L+  Y  CG+ + A  VF+ +P   RN+VSWNS++NG+
Sbjct: 139 GESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGF 198

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           A NG+  E L ++ + L+ +L PD FT VSVL+AC        G+      S V G+  +
Sbjct: 199 AANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKV-GLVGN 257

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
                 +I+L  +   V+ A  + + +      + W++L+   A  G  K   +    L 
Sbjct: 258 SHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGFGKDA-LELFGLM 316

Query: 520 ELEPINAGPYIMLSNMYAA--CGRWEDVASIRSSMKSK 555
           E E +      M+  +YA   CG  +D     + M+ K
Sbjct: 317 ERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDK 354


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/560 (35%), Positives = 325/560 (58%), Gaps = 35/560 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D +  NAL++ +++ G + D   LF+ MP  + V++N  IAGF   GF  EA  +FS M 
Sbjct: 107 DPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMI 166

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P   T  S L +  +   L++GK+IHG I+   +  +VF+++AL D+Y K  ++ 
Sbjct: 167 SAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVG 226

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F +  N ++V    +ISGY+ NG     +++F+ +    ++P+ VT++++L AC 
Sbjct: 227 MACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACA 286

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR+D A ++F  + EKD VCW  
Sbjct: 287 GLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNA 346

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           +I   +QNGK ++A+ LF +M  E +  D  SIS+ +S+CA L +L+HG+ +H   +   
Sbjct: 347 IITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGA 406

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
            D ++   SALIDMY KCG    A  VF+MM  +N VSWNS+I  Y  +G    +LAL+ 
Sbjct: 407 FDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFH 466

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           K+L++ ++PD  TF+++LSAC HA   ++G  +F  ++  +GI   ++HYAC+++L GR+
Sbjct: 467 KMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRA 526

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +++A + IK++P  P+  +W TLL  C + G+++  E+A+R L +L+P N+G Y++LS
Sbjct: 527 GRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLS 586

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N++A  G+W  V  IRS MK + V+K   YSWIE++   H FV+ D +HPE+  IY  L+
Sbjct: 587 NVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAADGSHPESAQIYSVLN 646

Query: 594 KLIKKLQEAGFSPNTKLVLH 613
            L+ +L++ G+ P   L +H
Sbjct: 647 NLLLELRKEGYCPKPYLPMH 666



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 152/552 (27%), Positives = 252/552 (45%), Gaps = 101/552 (18%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+ + L+  YA++G +  AR LFDKMP +D + WN +L+                     
Sbjct: 8   FVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLN--------------------- 46

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                     GF   G    A++VF  M+  + +P   T  S L+ CA       G Q+H
Sbjct: 47  ----------GFVKCGEPNSAVKVFEDMRNCQTKPNSITFASVLSICASEALSEFGNQLH 96

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
           G ++      +  V NAL  MY+K G++  A  LF+ M + N+V+WN MI+G+++NG   
Sbjct: 97  GLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMD 156

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNIL-----GACFQTGR---------------------I 273
           +   LF EM   G++PD +T ++ L      A  + G+                     I
Sbjct: 157 EASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALI 216

Query: 274 D------DAGRLFHVIKEKDN---VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
           D      D G    + K+  N   V  T +I GY  NG   DAL +F  +L E + P+  
Sbjct: 217 DIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAV 276

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           +++SV+ +CA LA+L  G+ +H   +  G+D+   V SA++DMY KCG  D A+ +F  M
Sbjct: 277 TLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRM 336

Query: 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG- 443
           P ++ V WN++I   +QNG+  EA+ L+ ++ +E L  D  +  + LSAC +      G 
Sbjct: 337 PEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGK 396

Query: 444 -------QNHFDS-------ISAVHGITPSLDHYACMINLLGRSSDVD-----------K 478
                  +  FDS       +  ++G   +L    C+ +++   ++V             
Sbjct: 397 AIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHG 456

Query: 479 AVDLIKSLPHK-------PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPY 529
            +++  +L HK       P+ + + T+LS C   G +  G    R + E    P     Y
Sbjct: 457 HLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHY 516

Query: 530 IMLSNMYAACGR 541
             + +++   GR
Sbjct: 517 ACIVDLFGRAGR 528



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/357 (28%), Positives = 187/357 (52%), Gaps = 39/357 (10%)

Query: 187 LGGNV--FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           +G NV  FV ++L  +YA+ G I+ AR LFD+M N++ V WN+M++G++K G+P   + +
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 245 FQEMQLLGLNPDEVTVSNILGACF-----------------------------------Q 269
           F++M+     P+ +T +++L  C                                    +
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV 329
            G++ DA +LF+ + + + V W  MI G+ QNG  ++A +LF+EM+S  V PD  + +S 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 330 VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
           + S  + ASL  G+ +HG  +  G+  D+ + SALID+Y KC     A  +F      ++
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449
           V   ++I+GY  NG + +AL ++  LL+E + P++ T  SVL AC        G+    +
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           I   HG+       + ++++  +   +D A  + + +P K +++ W+ +++ C+  G
Sbjct: 301 ILK-HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNCSQNG 355



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 158/351 (45%), Gaps = 56/351 (15%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
           +G N DE   S+++    + G I+DA RLF  +  KD V W  M+ G+ + G+   A+ +
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F +M +   +P+  + +SV+S CA  A    G  +HG  +  G   D LV++AL+ MY K
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSK 120

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
            G   DA  +FN MP  NVV+WN MI G+ QNG   EA  L+ +++   + PDS TF S 
Sbjct: 121 FGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASF 180

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS----- 485
           L +   +   ++G+     I   HGI   +   + +I++  +  DV  A  + K      
Sbjct: 181 LPSVTESASLKQGKEIHGYI-LRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVD 239

Query: 486 ---------------------------LPHK--PNSLIWSTLLSVCAMKGD--------- 507
                                      L  K  PN++  +++L  CA             
Sbjct: 240 IVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHA 299

Query: 508 --IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
             +KHG    RH+        G  IM  +MYA CGR +    I   M  K+
Sbjct: 300 NILKHGLDERRHV--------GSAIM--DMYAKCGRLDLAYQIFRRMPEKD 340



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 12/167 (7%)

Query: 6   KLRQAIDTLYSRGQAATEE---AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH 62
           K ++AID     G+        + +  +  C  +  +   K + S M    ++ +  F  
Sbjct: 356 KPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFD-SEVFAE 414

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM------ 116
           + L+  Y K G L  AR +FD M  ++ +SWN++++A+   G ++   ALF KM      
Sbjct: 415 SALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQ 474

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
           P  D V++ T ++   + G   + +Q F  M ++   P    H + +
Sbjct: 475 P--DHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACI 519


>gi|302764988|ref|XP_002965915.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
 gi|300166729|gb|EFJ33335.1| hypothetical protein SELMODRAFT_167728 [Selaginella moellendorffii]
          Length = 912

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/636 (33%), Positives = 340/636 (53%), Gaps = 56/636 (8%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N LL  YA++G L  AR  F++MP  D+++W AL++   ++G +++   L+D +P RD V
Sbjct: 331 NALLSAYAQAGHLHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEVLYDLIPERDLV 390

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           ++   I  +   G   E+ +V++ M +                        R +  H  +
Sbjct: 391 AWTALIQAYGVNGKLTESKRVYALMPE------------------------RNRVSHTAM 426

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           ++                Y++ GE+ +AR + D + + +  +   MI  Y +NG  K   
Sbjct: 427 IIA---------------YSQNGEVVQARKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAR 471

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302
           ++F  ++    NPD +  + ++ A      +D A  +F  IK+K  V W TM+  Y Q G
Sbjct: 472 EMFDSIK----NPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAG 527

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDD-DLLV 360
             ++A  +F+ +      P K    +VVS    + +  H   +   + +   +D+ D + 
Sbjct: 528 NLDEAKSIFDSI------PHK----NVVSHNVMIVAYAHNMDLAEARRIFYSMDEKDTVT 577

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +A++ M  + G   +A  +F  MP RNVVSWNS+I G A  G  + A+     +  E  
Sbjct: 578 WTAMVAMVAQHGRLAEAQELFAKMPYRNVVSWNSLIAGMASCGHGMAAVRYLYVMRNEGA 637

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
           KPD  TF+ +L AC H  L E G  HF S+   HG+ P  +HY  M+++LGR+  +  A 
Sbjct: 638 KPDHITFMGILIACSHVGLVEEGWTHFTSMQGDHGLIPWREHYCRMVDVLGRAGQLGAAR 697

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           +L++++P  P+   W +LL  C    D+K G  AA  L + +  ++GPY++L+NMY++ G
Sbjct: 698 ELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTRAAESLLQFDDQSSGPYVLLANMYSSVG 757

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           R  D  ++R+ MK++ VKK    S I +D  +H+FV+ + +HP  + I  ELS+L + ++
Sbjct: 758 RVADALAVRNRMKARGVKKQPGVSLIRVDGVLHRFVAGEASHPRHQEILSELSRLQELMK 817

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
           +AG+ P+TK VLH   +EEK   + YHSEKLA+A+  I    G TPIRIMKN+RVC DCH
Sbjct: 818 KAGYQPDTKAVLHSILDEEKEVLLSYHSEKLAIAFASIACEPG-TPIRIMKNLRVCSDCH 876

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
              KF S ++ R II+RD  RFH+F  G CSC D W
Sbjct: 877 TATKFLSKLLQREIIVRDGYRFHNFENGTCSCGDYW 912



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 140/615 (22%), Positives = 267/615 (43%), Gaps = 100/615 (16%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           + A    +  C    D+   +++ + +    +  N  FL N ++  Y K  ++  A+ +F
Sbjct: 12  QNALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNL-FLQNLIIQMYGKCSRIDDAQAVF 70

Query: 83  DKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQ 142
           +++P  ++ S   L+ A++ +G +   +A+FD++P  + VS+N+ IAGF+  GF   A +
Sbjct: 71  NELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADE 130

Query: 143 VFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202
           +F+RM   R+  + +   S +   AQ  DL     +  +        NV   NAL   Y+
Sbjct: 131 IFARM--PRWSSSSWN--SMITGYAQSGDLASATAMFDR----TPEHNVISWNALITGYS 182

Query: 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF----------------- 245
               I +A+ +FDR   R+ +SWN M++ Y ++G      ++F                 
Sbjct: 183 DNRMIPEAKGVFDRAPGRDKISWNAMLTAYAQSGDLDSAKEVFDRTPQQDIVSCTLMIKA 242

Query: 246 ---QEM-----QLLGLNPDE--VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
              QE+     ++    PD   V+ S ++      G+I +A  L   + ++D   WT+M+
Sbjct: 243 CAVQEILGHAVEIFAAMPDRNAVSYSFMIQIYIDQGKIGEAENLSRRMPQQDPTLWTSML 302

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY--------------- 340
             Y+++G  E+A  +F+     D   D+ S ++++S+ A+   L+               
Sbjct: 303 SAYSRHGLVEEARRIFDRAARRD---DEVSWNALLSAYAQAGHLHLARSTFERMPRHDVV 359

Query: 341 -----------HGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
                      +GQ+   + +  L  + DL+  +ALI  Y   G   ++  V+ +MP RN
Sbjct: 360 AWTALIAVSGQNGQLEEAEVLYDLIPERDLVAWTALIQAYGVNGKLTESKRVYALMPERN 419

Query: 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448
            VS  +MI  Y+QNG+ ++A  + D L      PD  T  S++ A       +  +  FD
Sbjct: 420 RVSHTAMIIAYSQNGEVVQARKMLDTLPD----PDQSTRTSMIVAYAQNGYIKDAREMFD 475

Query: 449 SIS-----------AVHGITPSLDH---------------YACMINLLGRSSDVDKAVDL 482
           SI              +     LDH               +  M+    ++ ++D+A  +
Sbjct: 476 SIKNPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVSWNTMVAAYAQAGNLDEAKSI 535

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
             S+PHK N +  + ++   A   D+     A R  + ++  +   +  +  M A  GR 
Sbjct: 536 FDSIPHK-NVVSHNVMIVAYAHNMDLAE---ARRIFYSMDEKDTVTWTAMVAMVAQHGRL 591

Query: 543 EDVASIRSSMKSKNV 557
            +   + + M  +NV
Sbjct: 592 AEAQELFAKMPYRNV 606



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%)

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           +L   VR  + ++++ + SC     L  G+ +H +        +L + + +I MY KC  
Sbjct: 3   LLKTQVRELQNALATAIRSCGIAKDLAQGRKIHNQIADGEHRGNLFLQNLIIQMYGKCSR 62

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            DDA  VFN +P  NV S   ++  Y++NG    A A++D++   N+
Sbjct: 63  IDDAQAVFNELPEPNVFSRCILMQAYSENGDLGSAKAIFDQIPSHNV 109


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 304/542 (56%), Gaps = 36/542 (6%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           NV   N L   Y K G++  AR LFD M  RN+ +WN M++G    G  ++ +  F +M+
Sbjct: 106 NVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMR 165

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
             G++PDE  + ++   C                                    + G + 
Sbjct: 166 REGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQ 225

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           +   +  ++     V   T+I G TQNG  E AL  F  M S  V  D  +  S +SSC+
Sbjct: 226 EGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISSCS 285

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            LA+L  GQ +HG+ +  GVD  + V + L+ MY +CG   D+  VF      +    ++
Sbjct: 286 DLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSA 345

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI+ Y  +G   +A+ L+ +++    +P   TF+++L AC H+ L E G + F+ ++  +
Sbjct: 346 MISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTKTY 405

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G+ PS+ HY C+++LLGRS  +D+A  LI S+P  P+ +IW TLLS C  + +    E  
Sbjct: 406 GMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERI 465

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A+ + EL+P ++  Y++LSN+ A   RW DV+ +R +M+  NV+K    SW+E+   +H+
Sbjct: 466 AKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHIHQ 525

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F + D +HP  + I E L +++ K+++ G+SP+  +VLHD ++EEK  S+ +HSEKLA+A
Sbjct: 526 FCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLAIA 585

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           +  +  P GV PIR+MKN+RVC DCHL +K  S + GR I++RD +RFHHF  G CSC+D
Sbjct: 586 FAFLSLPEGV-PIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCRD 644

Query: 695 NW 696
            W
Sbjct: 645 YW 646



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 173/375 (46%), Gaps = 37/375 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F  N L+  YA  G L  AR+LF+++P R+++SWN L   + ++G +   R LFD+MP R
Sbjct: 77  FTANHLMLAYADLGDLTAARELFERIPRRNVMSWNILFGGYIKNGDLGGARKLFDEMPER 136

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           +  ++N  +AG  N GF  E+L  F  M+++   P ++   S    CA L D+  G+Q+H
Sbjct: 137 NVATWNAMVAGLTNLGFDEESLGFFLDMRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVH 196

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +V   L  ++ V ++L  MY + G + +   +   + + ++VS N +I+G  +NG  +
Sbjct: 197 AYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSE 256

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
             ++ F  M+ +G+  D VT  + + +C                                
Sbjct: 257 GALEYFCMMRSVGVAADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLV 316

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G + D+ R+F      D    + MI  Y  +G  + A+ LF +M++    P   
Sbjct: 317 HMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDV 376

Query: 325 SISSVVSSCAKLASLYHGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +  +++ +C+       G           G+   +   + ++D+  + G  D+A  +   
Sbjct: 377 TFLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILS 436

Query: 384 MP-TRNVVSWNSMIN 397
           MP T + V W ++++
Sbjct: 437 MPLTPDGVIWKTLLS 451



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 104/284 (36%), Gaps = 76/284 (26%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
            S +  +C  L  L     +H  A   G   D   ++ L+  Y   G    A  +F  +P
Sbjct: 47  FSHLFRACRALRPLRQ---LHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 103

Query: 386 TRNVVSWNSMINGYAQNGQ-------------------------------DLEALALYDK 414
            RNV+SWN +  GY +NG                                D E+L  +  
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163

Query: 415 LLQENLKPDSFTFVSVLSAC-----------LHADLFERGQNH----------------- 446
           + +E + PD F   SV   C           +HA +   G +                  
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 223

Query: 447 FDSISAVHGITPSLDHYACMINLLGRS--SDVDKAVD---LIKSLPHKPNSLIWSTLLSV 501
                AV  + PSL   +C   + GR+   D + A++   +++S+    + + + + +S 
Sbjct: 224 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 283

Query: 502 CA-----MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           C+      +G   HG++    + ++ P+       L +MY+ CG
Sbjct: 284 CSDLAALAQGQQIHGQVMKAGVDKVVPV----MTCLVHMYSRCG 323


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/614 (34%), Positives = 345/614 (56%), Gaps = 22/614 (3%)

Query: 95  ALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154
           A   AH  SG++     +FD +P      +NT I G++        + ++  M     +P
Sbjct: 47  AFCCAH-ESGNMNYAHQVFDTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKP 105

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +T   +L    + + L+ GK++    V      N+FV+ A   M++  G +D A  +F
Sbjct: 106 DRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVF 165

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPK------------KCIDLFQEMQLLGLNPDEVTVSN 262
           D  +   +V+WN+M+SGY +  Q K            K  DL     +       + V +
Sbjct: 166 DMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGI-VEH 224

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           +  AC   G +D+A  +F  +K +D V WT MI GY +      AL LF EM   +V+PD
Sbjct: 225 MFAAC---GEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPD 281

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
           +F++ S++ +CA L +L  G+ V          +D  V +AL+DMY KCG    A  VF 
Sbjct: 282 EFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFK 341

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
            M  ++  +W +MI G A NG   EALA++  +++ ++ PD  T++ VL AC+     ++
Sbjct: 342 EMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCACM----VDK 397

Query: 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502
           G++ F +++  HGI P++ HY CM++LLG    +++A+++I ++P KPNS++W + L  C
Sbjct: 398 GKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGAC 457

Query: 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562
            +  +++  +MAA+ + ELEP N   Y++L N+YAA  +WE++  +R  M  + +KK   
Sbjct: 458 RVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPG 517

Query: 563 YSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVK 622
            S +E++  V++FV+ D++HP+++ IY +L  +++ L +AG+SP+T  V  D  EE+K  
Sbjct: 518 CSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKET 577

Query: 623 SICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRF 682
           ++  HSEKLA+AY LI    GVT IRI+KN+R+C DCH   K  S    R +I++D  RF
Sbjct: 578 ALYRHSEKLAIAYALISSGPGVT-IRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRF 636

Query: 683 HHFVGGNCSCKDNW 696
           HHF  G+CSC + W
Sbjct: 637 HHFRHGSCSCNNFW 650



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 43/240 (17%)

Query: 29  LVLD-CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87
           LVL  C+++ D+E  K +  +++    E           H +A  G++  A+ +FD M  
Sbjct: 196 LVLSACSKLKDLEWGKHIFKYINGGIVE-----------HMFAACGEMDEAQGVFDNMKT 244

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD++SW A++  + R                      N  I           AL +F  M
Sbjct: 245 RDVVSWTAMIDGYLR---------------------MNHFIG----------ALALFREM 273

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           Q    +P ++T VS L ACA L  L  G+ +   I   +   + FV NAL DMY K G +
Sbjct: 274 QMSNVKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNV 333

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            KA+ +F  M  ++  +W  MI G   NG  ++ + +F  M    + PDE+T   +L AC
Sbjct: 334 RKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC 393



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/255 (23%), Positives = 113/255 (44%), Gaps = 31/255 (12%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC--KCGVTDDAWTVFNMMP 385
           S +S   K  S+Y  + +H   + +G+  D L  + +I   C  + G  + A  VF+ +P
Sbjct: 9   SPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIP 68

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445
             ++  WN+MI GY++       +++Y  +L  N+KPD FTF   L         + G+ 
Sbjct: 69  HPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKE 128

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL------- 498
             +  +  HG   +L      I++      VD A  +   +      + W+ +       
Sbjct: 129 LLNH-AVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVF-DMGDACEVVTWNIMLSGYNRV 186

Query: 499 -----------LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
                      LS C+   D++ G    +H+F+   IN G   ++ +M+AACG  ++   
Sbjct: 187 KQFKISKMLLVLSACSKLKDLEWG----KHIFKY--INGG---IVEHMFAACGEMDEAQG 237

Query: 548 IRSSMKSKNVKKFAA 562
           +  +MK+++V  + A
Sbjct: 238 VFDNMKTRDVVSWTA 252


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/513 (37%), Positives = 300/513 (58%), Gaps = 38/513 (7%)

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPD--------------------EVT 259
           N+  WN +I GY + G       L++EM++ GL  PD                    E  
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 260 VSNILGACFQT---------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
            S ++ + F +               G +  A ++F  + EKD V W ++I G+ +NGK 
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364
           E+AL L+ EM S+ ++PD F+I S++S+CAK+ +L  G+ VH   + +G+  +L  S+ L
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPD 423
           +D+Y +CG  ++A T+F+ M  +N VSW S+I G A NG   EA+ L+  +   E L P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
             TFV +L AC H  + + G  +F  +   + I P ++H+ CM++LL R+  V KA + I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           KS+P +PN +IW TLL  C + GD    E A   + +LEP ++G Y++LSNMYA+  RW 
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           DV  IR  M    VKK   +S +E+ N+VH+F+  D++HP+++ IY +L ++  +L+  G
Sbjct: 444 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEG 503

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663
           + P    V  D +EEEK  ++ YHSEK+A+A+ LI  P   +PI ++KN+RVC DCHL +
Sbjct: 504 YVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPER-SPITVVKNLRVCADCHLAI 562

Query: 664 KFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           K  S +  R I++RD +RFHHF  G+CSC+D W
Sbjct: 563 KLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 1/194 (0%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+LL  +A  G V     +FDKMP +D V++N+ I GFA  G   EAL +++ M     +
Sbjct: 160 NSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIK 219

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +T VS L+ACA++  L  GK++H  ++   L  N+   N L D+YA+ G +++A+ L
Sbjct: 220 PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTL 279

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACFQTGR 272
           FD M ++N VSW  +I G   NG  K+ I+LF+ M+   GL P E+T   IL AC   G 
Sbjct: 280 FDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGM 339

Query: 273 IDDAGRLFHVIKEK 286
           + +    F  ++E+
Sbjct: 340 VKEGFEYFRRMREE 353



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 163/339 (48%), Gaps = 41/339 (12%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
           +NT I G+A  G S  A  ++  M+     EP  +T+   + A   + D+R G+ IH  +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147

Query: 183 VVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242
           +    G  ++V+N+L  +YA  G++  A  +FD+M  ++LV+WN +I+G+ +NG+P++ +
Sbjct: 148 IRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEAL 207

Query: 243 DLFQEMQLLGLNPDEVTVSNILGACFQT-------------------------------- 270
            L+ EM   G+ PD  T+ ++L AC +                                 
Sbjct: 208 ALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLY 267

Query: 271 ---GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDKFSI 326
              GR+++A  LF  + +K++V WT++IVG   NG  ++A+ LF  M S E + P + + 
Sbjct: 268 ARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITF 327

Query: 327 SSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
             ++ +C+    +  G +          ++  +     ++D+  + G    A+     MP
Sbjct: 328 VGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMP 387

Query: 386 TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
            + NVV W +++     +G     LA + ++    L+P+
Sbjct: 388 MQPNVVIWRTLLGACTVHGDS--DLAEFARIQILQLEPN 424



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R++ S N LL  +AR G V++ + LFD+M  ++SVS+ + I G A  GF +EA+++F  M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314

Query: 148 QK-DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGG 205
           +  +   P + T V  L AC+    ++ G +   ++     +   +     + D+ A+ G
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAG 374

Query: 206 EIDKARWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----DEVTV 260
           ++ KA      M  + N+V W  ++     +G     +  F  +Q+L L P    D V +
Sbjct: 375 QVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSD--LAEFARIQILQLEPNHSGDYVLL 432

Query: 261 SNILGA 266
           SN+  +
Sbjct: 433 SNMYAS 438


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/566 (36%), Positives = 318/566 (56%), Gaps = 45/566 (7%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           +AL+  + + G V +   +F +MP+R+ VS+   IAG    G+++EAL  FS M   +  
Sbjct: 107 SALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVG 166

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
              YT  SAL ACA    L  G++IH + +        FV N L  MY K G++D    L
Sbjct: 167 CDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRL 226

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F+ M  R++VSW  +I   ++ GQ +  +  F+ M+   ++P+E T + ++  C   GRI
Sbjct: 227 FESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRI 286

Query: 274 -----------------------------------DDAGRLFHVIKEKDNVCWTTMIVGY 298
                                              D A  +F  +  +D + W+TMI GY
Sbjct: 287 EWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGY 346

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            Q G  E+A    + M  E  RP++F+ +SV+S C  +A L  G+ +H   + +G++ + 
Sbjct: 347 AQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNT 406

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
           +V SALI+MY KCG   +A  +F+     N+VSW +MINGYA++G   EA+ L+ KL + 
Sbjct: 407 MVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKV 466

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            L+PDS TF++VL+AC HA L + G ++F+S+S VH I PS DHY CMI+LL R+  ++ 
Sbjct: 467 GLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLND 526

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A  +I+S+P + + ++WSTLL  C + GD+  G+ AA  + +L+P  A  +I L+NMYAA
Sbjct: 527 AESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAA 586

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G+W++ A +R  MKSK V K   +SWI+  ++V  FVS DR+HPE E IY+ L  L  +
Sbjct: 587 KGKWKEAAEVRKMMKSKGVVKEPGWSWIKFKDRVSAFVSGDRSHPEGEYIYDVLDLLASQ 646

Query: 599 ----LQEAGFSPNTKLVLHDTQEEEK 620
               +QE  F      +L++ QE ++
Sbjct: 647 AEMHMQEMDF------LLNEVQESQR 666



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 253/561 (45%), Gaps = 102/561 (18%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L    K+G L  AR LFDKM  RD ISW  ++S                        
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIIS------------------------ 40

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS-ALNACAQLLDLRRGKQIHGK 181
                  G+ N   + EAL +FS+M  +     D   +S AL AC   + +  G+ +HG 
Sbjct: 41  -------GYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGY 93

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
            V  +   +VFV +AL DMY K G++D+   +F  M  RN+VSW  +I+G ++ G  K+ 
Sbjct: 94  SVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEA 153

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQT------------------------------- 270
           +  F +M +  +  D  T S+ L AC  +                               
Sbjct: 154 LAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATM 213

Query: 271 ----GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
               G++D   RLF  + ++D V WTT+I+   Q G+EE+A+  F  M   DV P++F+ 
Sbjct: 214 YNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTF 273

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
           ++V+S CA L  +  G+ +H   +  G+ D L V+++++ MY KC   D A TVF  +  
Sbjct: 274 AAVISGCATLGRIEWGEQLHAHVIRRGLVDSLSVANSIMAMYSKCWQLDLASTVFQGLSR 333

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-- 444
           R+++SW++MI+GYAQ G   EA      + +E  +P+ F F SVLS C +  + E+G+  
Sbjct: 334 RDIISWSTMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQL 393

Query: 445 --------------------NHFDSISAVHGITPSLDH--------YACMINLLGRSSDV 476
                               N +    ++   +   D         +  MIN        
Sbjct: 394 HAHVLCVGLEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYS 453

Query: 477 DKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIM 531
            +A+DL K LP    +P+S+ +  +L+ C+  G +  G      L ++  I  +   Y  
Sbjct: 454 QEAIDLFKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGC 513

Query: 532 LSNMYAACGRWEDVASIRSSM 552
           + ++    GR  D  S+  SM
Sbjct: 514 MIDLLCRAGRLNDAESMIQSM 534



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 158/332 (47%), Gaps = 39/332 (11%)

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRP 321
           +L    +TG +++A +LF  + ++D + WTT+I GY       +AL LF++M  E  +  
Sbjct: 7   VLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHM 66

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D F +S  + +C    S+  G+ +HG +V     + + V SAL+DMY K G  D+   VF
Sbjct: 67  DPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCIVF 126

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC------- 434
             MP RNVVSW ++I G  + G + EALA +  +  + +  D++TF S L AC       
Sbjct: 127 KEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALN 186

Query: 435 ----LHADLFERGQNHF----DSISAVHGITPSLDH-----------------YACMINL 469
               +H    ++G        ++++ ++     LD+                    M N+
Sbjct: 187 YGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNV 246

Query: 470 -LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE---LEPIN 525
            +G+  +  KA   ++     PN   ++ ++S CA  G I+ GE    H+     ++ ++
Sbjct: 247 QIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLS 306

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
               IM   MY+ C + +  +++   +  +++
Sbjct: 307 VANSIM--AMYSKCWQLDLASTVFQGLSRRDI 336


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/617 (33%), Positives = 339/617 (54%), Gaps = 40/617 (6%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD---KMPLR- 88
           C +  DV+ A RL  +M  +  EPN   L    L   A    L     L     K  L  
Sbjct: 217 CIKAGDVDGAVRLFRNMRASGCEPNFATLAC-FLSVCATDADLLSGAQLHSLAVKCGLEP 275

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++   N LL+ +A+   + D   LF+ MP  D V++N  I+G    G   EA  +F  MQ
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +    P   T VS L A   L  L++GK++HG IV   +  +VF+ +AL D+Y K  ++ 
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ L+D     ++V  + MISGY+ NG  ++ + +F+ +    + P+ VT++++L  C 
Sbjct: 396 MAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCA 455

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + GR+D +  +F  + +KD V W +
Sbjct: 456 SMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNS 515

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI  ++QNGK ++AL LF +M  E ++ +  +IS+ +S+CA L ++Y+G+ +HG  +   
Sbjct: 516 MISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGP 575

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +  D+   SALIDMY KCG  + A  VF  MP +N VSWNS+I+ Y  +G   E+++L  
Sbjct: 576 IKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLH 635

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
            + +E  KPD  TF++++SAC HA L E G   F  ++  + I P ++H+ACM++L  RS
Sbjct: 636 GMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRS 695

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             +DKA+  I  +P KP++ IW  LL  C +  +++  ++A++ LF+L+P N+G Y+++S
Sbjct: 696 GKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMS 755

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N+ A  GRW+ V+ +R  MK   + K   YSW++++N  H FV+ D++HPE+E IY  L 
Sbjct: 756 NINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLK 815

Query: 594 KLIKKLQEAGFSPNTKL 610
            L+++L+E G+ P   L
Sbjct: 816 TLLQELREEGYVPRPDL 832



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 154/539 (28%), Positives = 249/539 (46%), Gaps = 83/539 (15%)

Query: 14  LYSRGQAATEEAYT--QLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAK 71
           ++S   A + +A+T   +V  C  +  + L  RL           N  ++ + L+  YA 
Sbjct: 130 MWSHPAAPSPDAHTLPYVVKSCAALGAMSLG-RLVHRTARAIGLANDVYVGSALVKMYAD 188

Query: 72  SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGF 131
           +G L  ARD FD +P RD + WN ++    ++G V                         
Sbjct: 189 AGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDG----------------------- 225

Query: 132 ANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
                   A+++F  M+    EP   T    L+ CA   DL  G Q+H   V   L   V
Sbjct: 226 --------AVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEV 277

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
            V N L  MYAK   +D A  LF+ M   +LV+WN MISG ++NG   +   LF +MQ  
Sbjct: 278 AVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRS 337

Query: 252 GLNPDEVTVSNILGAC-----------------------------------FQTGRIDDA 276
           G  PD +T+ ++L A                                    F+   +  A
Sbjct: 338 GARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMA 397

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
             L+   +  D V  +TMI GY  NG  E+AL +F  +L + ++P+  +I+SV+  CA +
Sbjct: 398 QNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASM 457

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
           A+L  GQ +HG  +    +    V SAL+DMY KCG  D +  +F  M  ++ V+WNSMI
Sbjct: 458 AALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMI 517

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
           + ++QNG+  EAL L+ ++  E +K ++ T  + LSAC        G+        +HG+
Sbjct: 518 SSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKE-------IHGV 570

Query: 457 T---P-SLDHYA--CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           T   P   D +A   +I++  +  +++ A+ + + +P K N + W++++S     G +K
Sbjct: 571 TIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDK-NEVSWNSIISAYGAHGLVK 628



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 190/462 (41%), Gaps = 83/462 (17%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVV-GNLG--GNVFVRNALTDMYAKGGEIDKARWLFD- 215
           ++ L  C     L  G QIH + VV G L    ++ +   L  MY        A  +F  
Sbjct: 36  LAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSA 95

Query: 216 --RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPDEVTVSNILGACFQTG 271
             R    + + WN +I G+   GQ    +  + +M       +PD  T+  ++ +C   G
Sbjct: 96  LPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALG 155

Query: 272 RID-----------------------------DAGRL------FHVIKEKDNVCWTTMIV 296
            +                              DAG L      F  I E+D V W  M+ 
Sbjct: 156 AMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMD 215

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
           G  + G  + A+ LF  M +    P+  +++  +S CA  A L  G  +H  AV  G++ 
Sbjct: 216 GCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEP 275

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLL 416
           ++ V++ L+ MY KC   DDAW +F +MP  ++V+WN MI+G  QNG  +EA  L+  + 
Sbjct: 276 EVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 417 QENLKPDSFTFVSVLSA--------------------CLHADLF---------------E 441
           +   +PDS T VS+L A                    C++ D+F                
Sbjct: 336 RSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVR 395

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
             QN +D+  A+  +  S      ++N  G S +  +    +     KPN++  +++L  
Sbjct: 396 MAQNLYDAARAIDVVIGSTMISGYVLN--GMSEEALQMFRYLLEQCIKPNAVTIASVLPG 453

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYI--MLSNMYAACGR 541
           CA    +  G+    ++          Y+   L +MYA CGR
Sbjct: 454 CASMAALPLGQQIHGYVLR-NAYERKCYVESALMDMYAKCGR 494


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/584 (35%), Positives = 320/584 (54%), Gaps = 42/584 (7%)

Query: 154 PTDYTH---VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
           P  Y H    + L +C     +R G+Q+H +++V  LG +  +   L D+YA  G +  A
Sbjct: 58  PYPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVA 117

Query: 211 RWLFDRMNNR-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACF 268
           R LFD M N+ N+  WN++I  Y ++G  +  I+L++EM   G + PD  T   +L AC 
Sbjct: 118 RRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACA 177

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              + G +D+A  +F     +D V W +
Sbjct: 178 ALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNS 237

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI    QNG+  +AL L   M +E + P   ++ S +S+ A   +L  G+ +HG     G
Sbjct: 238 MIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRG 297

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
                 + ++L+DMY K G    A  +F+ +  R ++SWN+MI G+  +G    A  L+ 
Sbjct: 298 FGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFR 357

Query: 414 KLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           ++  E  + PD  TFV VLSAC H  + +  +  FD +  V+ I P + HY C++++LG 
Sbjct: 358 RMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGH 417

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           S    +A D+IK +  KP+S IW  LL+ C +  +++  E+A   L ELEP +AG Y++L
Sbjct: 418 SGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLL 477

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+YA  G+WE+ A +R  M ++ +KK  A SWIE+  K H F+  D +HP ++ IYEEL
Sbjct: 478 SNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEEL 537

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
            +L   + + G+ P+T  V H+ +++EK   +  HSE+LA+A+ LI  P G T + + KN
Sbjct: 538 ERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPG-TKLLVTKN 596

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +RVC DCH+ +K  S I  R II+RD NR+HHFV G CSCKD+W
Sbjct: 597 LRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 187/415 (45%), Gaps = 72/415 (17%)

Query: 58  TTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP 117
            T L + +L    + G+  +AR L   + L  +++   L+  +A  G V   R LFD+MP
Sbjct: 67  ATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLA-TRLVDLYASCGLVSVARRLFDEMP 125

Query: 118 IRDSVS-YNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRG 175
            + +V  +N  I  +A  G    A++++  M      EP ++T+   L ACA LLDL  G
Sbjct: 126 NQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAG 185

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           +++H +++  +   +VFV   L DMYAK G +D+A  +FD    R+ V WN MI+   +N
Sbjct: 186 REVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQN 245

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTV----------------------------------- 260
           G+P + + L + M   G+ P  VT+                                   
Sbjct: 246 GRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLK 305

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DV 319
           +++L    ++G +  A  LF  +  ++ + W  MI G+  +G  + A  LF  M +E  V
Sbjct: 306 TSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQV 365

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD  +   V+S+C       HG +V     V     DL+V                  T
Sbjct: 366 MPDHITFVGVLSACN------HGGMVQEAKEVF----DLMV------------------T 397

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           V+++ P   V  +  +++    +G+  EA  +   +L   +KPDS  + ++L+ C
Sbjct: 398 VYSIKPM--VQHYTCLVDVLGHSGRFKEASDVIKGML---VKPDSGIWGALLNGC 447



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 154/312 (49%), Gaps = 20/312 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+     L+  +A+ G V +  A+FD   +RD+V +N+ IA     G   EAL +   M 
Sbjct: 200 DVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMA 259

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   PT  T VSA++A A    L RG+++HG       G    ++ +L DMYAK G + 
Sbjct: 260 AEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVT 319

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ-LLGLNPDEVTVSNILGAC 267
            AR LFD++ +R L+SWN MI G+  +G      +LF+ M+    + PD +T   +L AC
Sbjct: 320 VARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSAC 379

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT-------QNGKEEDALILFNEMLSEDVR 320
              G + +A  +F ++    ++    M+  YT        +G+ ++A  +   ML   V+
Sbjct: 380 NHGGMVQEAKEVFDLMVTVYSI--KPMVQHYTCLVDVLGHSGRFKEASDVIKGML---VK 434

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDA 377
           PD     ++++ C    ++   ++   K + L  +D    +L+S    ++Y + G  ++A
Sbjct: 435 PDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLS----NIYAQSGKWEEA 490

Query: 378 WTVFNMMPTRNV 389
             V  +M  R +
Sbjct: 491 ARVRKLMTNRGL 502


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/648 (32%), Positives = 344/648 (53%), Gaps = 74/648 (11%)

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVF-SRMQKDRFEPTDYTHVSALNACAQLLDLRR 174
           M I  S S         N G  ++A   F S +  D   P+ ++H+  L +C +L  L  
Sbjct: 27  MKISSSASLQE-FTSLCNDGRIKQAYDTFTSEIWSD---PSLFSHL--LQSCIKLGSLFG 80

Query: 175 GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE---------------------------- 206
           GKQ+H  I+      + F+ N L + Y+K G+                            
Sbjct: 81  GKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQ 140

Query: 207 ---IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
              ++ A+ LFD M+ RN+ +WN MI+G  +    K+ + LF+EM  LG  PDE T+ ++
Sbjct: 141 LGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSV 200

Query: 264 LGAC-----------------------------------FQTGRIDDAGRLFHVIKEKDN 288
           L  C                                    ++G + D  +L   +  +  
Sbjct: 201 LRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTV 260

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           V W T+I G  QNG  E+ L  +N M     RPDK +  SV+S+C++LA+L  GQ +H +
Sbjct: 261 VAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAE 320

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
            +  G    L V S+LI MY + G  +D+   F      +VV W+SMI  Y  +G+  EA
Sbjct: 321 VIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEA 380

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           L L+ ++    ++ +  TF+S+L AC H+ L E+G  +FD +   + + P ++HY C+++
Sbjct: 381 LELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVD 440

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           LLGR+  +++A  +I+S+P +P+ +IW TLL+ C +  + +  E  +  + +L+P++A  
Sbjct: 441 LLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAAS 500

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++LSN++A+   W +V+ IR +M+ ++V+K    SW+E+ N VH+F   D++HP+   I
Sbjct: 501 YVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEI 560

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
              L +L+ +L++ G+ P    VLHD   EEK  ++ +HSEK A+A+ L+     V PIR
Sbjct: 561 DLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENV-PIR 619

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +MKN+RVC DCH  +K  S I  R II+RD++RFHHF  G CSC + W
Sbjct: 620 VMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 181/364 (49%), Gaps = 37/364 (10%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +++QA DT  S    +    ++ L+  C ++  +   K++ S + +        F+ N L
Sbjct: 46  RIKQAYDTFTSE-IWSDPSLFSHLLQSCIKLGSLFGGKQVHS-LIITSGGSKDKFISNHL 103

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           L+FY+K G+   +  LF  MP R+++S+N L++ + + G ++  + LFD+M  R+  ++N
Sbjct: 104 LNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWN 163

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             IAG     F+++AL +F  M    F P ++T  S L  CA L  L  G+++H  ++  
Sbjct: 164 AMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKC 223

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
               +  V ++L  MY K G +     L   M  R +V+WN +I+G  +NG P++ ++ +
Sbjct: 224 GFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQY 283

Query: 246 QEMQLLGLNPDEVTVSNILGACFQ-----------------------------------T 270
             M++ G  PD++T  ++L AC +                                   +
Sbjct: 284 NMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRS 343

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G ++D+ + F   +  D V W++MI  Y  +G+ E+AL LF++M    +  ++ +  S++
Sbjct: 344 GCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLL 403

Query: 331 SSCA 334
            +C+
Sbjct: 404 YACS 407



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 131/245 (53%), Gaps = 8/245 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           ++L   + +SGS+ D   L   MPIR  V++NT IAG A  G   E L  ++ M+   F 
Sbjct: 233 SSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFR 292

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T VS L+AC++L  L +G+QIH +++       + V ++L  MY++ G ++ +   
Sbjct: 293 PDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKA 352

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F    N ++V W+ MI+ Y  +G+ ++ ++LF +M+ L +  +EVT  ++L AC  +G  
Sbjct: 353 FVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLK 412

Query: 274 DDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           +     F ++ +K  +      +T ++    + G+ E+A  +   M    V+PD     +
Sbjct: 413 EKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSM---PVQPDGIIWKT 469

Query: 329 VVSSC 333
           ++++C
Sbjct: 470 LLAAC 474


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/677 (32%), Positives = 361/677 (53%), Gaps = 53/677 (7%)

Query: 64  RLLHFYAKSGKLFYAR---DLFDKMPL-RDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           R++   A+ G L   R    L  ++ L  D+   N L+  + + GS+++ R +F+  P +
Sbjct: 39  RVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAK 98

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD-LRRGKQI 178
           +  S+   I   A  G S+EAL +F  M K   +P   +  +A+NAC+   + L  G+ +
Sbjct: 99  NVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRAL 158

Query: 179 HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
           H  +        V    +L  MY+K G ++++   F+ M   N VSWN MI+ + ++ + 
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRG 218

Query: 239 KKCIDLFQEMQLLGLNPDEVT------------------------------------VSN 262
            + +   Q+M L G+    VT                                    + N
Sbjct: 219 LEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNVILN 278

Query: 263 ILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
           + G C   G + DA  +F  + + D + W TMI  Y+Q+G   +AL  +  M  E V PD
Sbjct: 279 MYGKC---GCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPD 335

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS---SALIDMYCKCGVTDDAWT 379
            ++  SV+ +CA L  +  G+ VH +   LG D    V+   ++L++MY KCG+ D A +
Sbjct: 336 DYTYVSVIDACATLGDMEVGKQVHRR---LG-DRAFQVTELANSLVNMYGKCGILDVARS 391

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+    +  V+WN+MI  YAQ+  + +A  L+  +  +  +P   TF+SVLSAC +A L
Sbjct: 392 IFDK-TAKGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGL 450

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            E   ++F  +   HG+ P   HY CM+  LG++  +  A  LI+ +P +P+ L W++ L
Sbjct: 451 PEEAHSYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFL 510

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
           + C   GD+K G+ AA+    ++P  +  Y+ L+ ++A  G +++ + IR  M  + ++K
Sbjct: 511 ANCRSHGDMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRK 570

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEE 619
            A  S I++   V++F + D+++P ++ I++EL +L K+++ AG+ P+   V HD +  +
Sbjct: 571 NAGRSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQ 630

Query: 620 KVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDS 679
           K   +  HSE+LA+A+ +I    G TP+RIMKN+RVCGDCH   K  S I  R II+RDS
Sbjct: 631 KEPLLFAHSERLAIAFGIISTSQG-TPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDS 689

Query: 680 NRFHHFVGGNCSCKDNW 696
           NRFHHF  G+CSCKD W
Sbjct: 690 NRFHHFKNGSCSCKDFW 706



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 194/420 (46%), Gaps = 50/420 (11%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           V  + +CA+L  L  G++IH  I    LG +V+V N L  MY K G +++AR +F+    
Sbjct: 38  VRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPA 97

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------ 267
           +N+ SW ++I+   ++G+ ++ + LF EM   G+ P  V+ +  + AC            
Sbjct: 98  KNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRA 157

Query: 268 ---------FQ---------------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                    FQ                G ++++ + F  + E + V W  MI  + ++ +
Sbjct: 158 LHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRR 217

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
             +AL    +M  E +R    +  +++S+  + + L   + +H   +  G D D  V + 
Sbjct: 218 GLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQD--VVNV 275

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           +++MY KCG   DA  +F  M   +V++WN+MI  Y+Q+G   EAL  Y+ + +E + PD
Sbjct: 276 ILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPD 335

Query: 424 SFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
            +T+VSV+ AC      E G Q H         +T   +    ++N+ G+   +D A  +
Sbjct: 336 DYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELANS---LVNMYGKCGILDVARSI 392

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA--GPYIMLSNMYAACG 540
                    S+ W+ ++   A        E  A  LF L  ++     YI   ++ +AC 
Sbjct: 393 FDKTA--KGSVTWNAMIGAYAQHSH----EQQAFELFLLMRLDGEEPSYITFMSVLSACA 446



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 137/301 (45%), Gaps = 54/301 (17%)

Query: 63  NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSV 122
           N +L+ Y K G L  A  +F  M   D+I+WN                            
Sbjct: 274 NVILNMYGKCGCLQDAEAMFKSMSQPDVIAWN---------------------------- 305

Query: 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKI 182
              T IA ++  G + EAL+ +  MQ++   P DYT+VS ++ACA L D+  GKQ+H + 
Sbjct: 306 ---TMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRR- 361

Query: 183 VVGNLGGNVF----VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238
               LG   F    + N+L +MY K G +D AR +FD+   +  V+WN MI  Y ++   
Sbjct: 362 ----LGDRAFQVTELANSLVNMYGKCGILDVARSIFDK-TAKGSVTWNAMIGAYAQHSHE 416

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTT 293
           ++  +LF  M+L G  P  +T  ++L AC   G  ++A   F  +++   V      +  
Sbjct: 417 QQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGC 476

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M+    + G+  DA  L   M  E   PD  + +S +++C       HG +  GK    G
Sbjct: 477 MVESLGKAGRLSDAEALIQGMPFE---PDVLTWTSFLANCRS-----HGDMKRGKFAAKG 528

Query: 354 V 354
            
Sbjct: 529 A 529



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 59/291 (20%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           Y  ++  C  + D+E+ K  Q H  L       T L N L++ Y K G L  AR +FDK 
Sbjct: 339 YVSVIDACATLGDMEVGK--QVHRRLGDRAFQVTELANSLVNMYGKCGILDVARSIFDKT 396

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS----VSYNTAIAGFANKGFSREAL 141
             +  ++WNA++ A+A+    Q    LF  M +       +++ + ++  AN G   EA 
Sbjct: 397 A-KGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAH 455

Query: 142 QVFSRMQKDR---------------------------------FEPTDYTHVSALNACAQ 168
             F  MQ+D                                  FEP   T  S L  C  
Sbjct: 456 SYFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRS 515

Query: 169 LLDLRRGK-QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA----RWLFDRMNNRNL- 222
             D++RGK    G I +       +V  AL  ++A  G+  +A    + + DR   +N  
Sbjct: 516 HGDMKRGKFAAKGAIRIDPEASTGYV--ALARIHADAGDFQEASRIRKLMLDRGIRKNAG 573

Query: 223 -------VSWNLMISGYLKNGQPKKCID----LFQEMQLLGLNPDEVTVSN 262
                   S     +G   N + K+  D    L +EM+  G +PD   V++
Sbjct: 574 RSIIKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAH 624


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 214/648 (33%), Positives = 352/648 (54%), Gaps = 40/648 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           ++++  NAL+  +++ G + D + +F     ++ VS+NT + GF+  G   +   +  +M
Sbjct: 322 KEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQM 381

Query: 148 --QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALTDMYAKG 204
                     + T ++A+  C +   L   K++H   +    +  N  V NA    YAK 
Sbjct: 382 LAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKC 441

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G +  A  +F  + ++ + SWN +I GY ++  P+  +D + +M+  GL PD  TV ++L
Sbjct: 442 GSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLL 501

Query: 265 GACFQT-----------------------------------GRIDDAGRLFHVIKEKDNV 289
            AC Q                                    G +  A  LF  +++K  V
Sbjct: 502 SACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLV 561

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            W TM+ GY QNG  E AL LF +M+   V+P + S+ SV  +C+ L SL  G+  HG A
Sbjct: 562 SWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYA 621

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +   ++D+  ++ ++IDMY K G   +++ VFN +  R+V SWN+M+ GY  +G+  EA+
Sbjct: 622 LKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAI 681

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L++++ +    PD  TF+ VL+AC H+ L   G  + D +  + G+ P+L HYAC+I++
Sbjct: 682 KLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDM 741

Query: 470 LGRSSDVDKAVDL-IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528
           L R+  +D+A+ +  + +  +P   IW+ LLS C +  +++ GE  A  LF  EP     
Sbjct: 742 LVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPEN 801

Query: 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEII 588
           Y++LSN+YA  G+W++V  +R  MK  +++K A  SWIE++ KV  FV+ + +    E I
Sbjct: 802 YVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEI 861

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
               S L +++ + G+ P+T  V HD  EEEK + +  HSEKLA+ Y LI+   G T +R
Sbjct: 862 KSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTT-LR 920

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           + KN+R+C DCH   K  S ++ R I++RD+ RFHHF  G CSC D W
Sbjct: 921 VYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 187/404 (46%), Gaps = 50/404 (12%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEP 154
           +++ ++  GS  D R++FD +  ++   +N  I+ ++        L++F +M  +    P
Sbjct: 123 VITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLLP 182

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
            ++T    + ACA + +++ G  +HG +V   L  +VFV NAL   Y   G +  A  +F
Sbjct: 183 DNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVF 242

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ----LLGLNPDEVTVSNILGACF-- 268
             M  RNLVSWN MI  +  NG  ++C  L  +M      +   PD  T++ +L  C   
Sbjct: 243 KIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARD 302

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G I+DA  +F +   K+ V W TM+
Sbjct: 303 REIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMV 362

Query: 296 VGYTQNGKEEDALILFNEMLS--EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            G++  G       L  +ML+   D+R D+ +I + V  C + + L + + +H  ++   
Sbjct: 363 GGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQE 422

Query: 354 -VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
            V ++ LV++A +  Y KCG    A  VF  + ++ V SWN++I GY+Q+     +L  Y
Sbjct: 423 FVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAY 482

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            ++    L PD FT  S+LSAC      + G+        VHG+
Sbjct: 483 FQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKE-------VHGL 519



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 78/430 (18%)

Query: 50  DLNFYEPNTTFLHNR------LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARS 103
           +L+ Y     F+HN        +  YAK G L YA  +F  +  + + SWNAL+  +++S
Sbjct: 413 ELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQS 472

Query: 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163
                                             R +L  + +M+     P  +T  S L
Sbjct: 473 SD-------------------------------PRLSLDAYFQMKSSGLLPDLFTVCSLL 501

Query: 164 NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV 223
           +AC+Q+  L+ GK++HG I+   L  + FV  +L  +Y   GE+  A  LFD M ++ LV
Sbjct: 502 SACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLV 561

Query: 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---------------- 267
           SWN M++GYL+NG P++ + LF++M L G+ P E+++ ++ GAC                
Sbjct: 562 SWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYA 621

Query: 268 -------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308
                               + G + ++ ++F+ +KE+    W  M++GY  +G+ ++A+
Sbjct: 622 LKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAI 681

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDM 367
            LF EM      PD+ +   V+++C     ++ G   +     + G++  L   + +IDM
Sbjct: 682 KLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDM 741

Query: 368 YCKCGVTDDAWTVFN--MMPTRNVVSWNSMING--YAQNGQDLEALALYDKLLQENLKPD 423
             + G  D+A  +    M     V  WN +++     +N +  E +A     + E  KP+
Sbjct: 742 LVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIA-AKLFVSEPEKPE 800

Query: 424 SFTFVSVLSA 433
           ++  +S L A
Sbjct: 801 NYVLLSNLYA 810



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 220/503 (43%), Gaps = 87/503 (17%)

Query: 139 EALQVFSRMQK---DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVR 194
           + ++ F R +K   D F          L A  +  D++ G++IH  +     L  +  + 
Sbjct: 61  QVIEEFDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQLVSESARLSNDDVLC 120

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGL 253
             +  MY+  G  D +R +FD +  +NL  WN +IS Y +N      +++F +M    GL
Sbjct: 121 TRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGL 180

Query: 254 NPDEVTVSNILGACF-----------------------------------QTGRIDDAGR 278
            PD  T   ++ AC                                      G + DA R
Sbjct: 181 LPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALR 240

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED----VRPDKFSISSVVSSCA 334
           +F ++ E++ V W +MI  ++ NG  E+  +L  +M+ +D      PD  ++++V+  CA
Sbjct: 241 VFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCA 300

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           +   +  G+ VHG A+ L +D +++V++AL+DMY KCG  +DA  +F +   +NVVSWN+
Sbjct: 301 RDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNT 360

Query: 395 MINGYAQNGQDLEALALYDKLLQ--ENLKPDSFTFVSVLSAC------------------ 434
           M+ G++  G   +   L  ++L    +L+ D  T ++ +  C                  
Sbjct: 361 MVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLK 420

Query: 435 --------LHADLFERGQNHFDSISAVHGI-----TPSLDHYACMINLLGRSSDVDKAVD 481
                   L A+ F        S+S  H +     + +++ +  +I    +SSD   ++D
Sbjct: 421 QEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLD 480

Query: 482 L---IKSLPHKPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSN 534
               +KS    P+     +LLS C+    +K G+    +  R+  E +      YI L +
Sbjct: 481 AYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSF---VYISLLS 537

Query: 535 MYAACGRWEDVASIRSSMKSKNV 557
           +Y  CG       +  +M+ K +
Sbjct: 538 LYIHCGELSTAHVLFDAMEDKTL 560



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 45/331 (13%)

Query: 29  LVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR 88
           L+  C+++  ++L K +   +  N  E ++ F++  LL  Y   G+L  A  LFD M  +
Sbjct: 500 LLSACSQIKSLKLGKEVHGLIIRNRLERDS-FVYISLLSLYIHCGELSTAHVLFDAMEDK 558

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
            ++SWN +                               + G+   GF   AL +F +M 
Sbjct: 559 TLVSWNTM-------------------------------VNGYLQNGFPERALSLFRQMV 587

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +P + + +S   AC+ L  LR G++ HG  +   L  N F+  ++ DMYAK G + 
Sbjct: 588 LYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVM 647

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           ++  +F+ +  R++ SWN M+ GY  +G+ K+ I LF+EMQ  G  PDE+T   +L AC 
Sbjct: 648 ESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACN 707

Query: 269 QTGRIDDAGRLFHVIKE--------KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
            +G + +       +K         K   C   M+V   + GK ++AL +  E +SE+  
Sbjct: 708 HSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLV---RAGKLDEALKIATEEMSEE-- 762

Query: 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           P     + ++SSC    +L  G+ +  K  V
Sbjct: 763 PGVGIWNFLLSSCRIHKNLEMGEKIAAKLFV 793


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 234/711 (32%), Positives = 367/711 (51%), Gaps = 103/711 (14%)

Query: 57  NTTFLHNRLLHFYAKSGK---LFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALF 113
           NT +  ++L+ F   S     L YA  +F  +   +++ WN +   HA S          
Sbjct: 63  NTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSS--------- 113

Query: 114 DKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLR 173
                 D VS                AL+++  M      P  YT    L +CA+    +
Sbjct: 114 ------DPVS----------------ALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFK 151

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE--------------------------- 206
            G+QIHG ++      +++V  +L  MY + G                            
Sbjct: 152 EGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYA 211

Query: 207 ----IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262
               I+ A+ LFD +  +++VSWN MISGY + G  K+ ++LF++M    + PDE T+  
Sbjct: 212 SRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVT 271

Query: 263 ILGACFQTGRI----------DDAG-------------------------RLFHVIKEKD 287
           ++ AC Q+G I          DD G                          LF  +  KD
Sbjct: 272 VVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKD 331

Query: 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHG 347
            + W T+I GYT     ++AL+LF EML     P+  ++ S++ +CA L ++  G+ +H 
Sbjct: 332 VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHV 391

Query: 348 --KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQD 405
                + GV +   + ++LIDMY KCG  + A  VFN +  +++ SWN+MI G+A +G+ 
Sbjct: 392 YIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRA 451

Query: 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465
             +  L+ ++ +  ++PD  TFV +LSAC H+ + + G++ F +++  + +TP L+HY C
Sbjct: 452 DASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGC 511

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           MI+LLG S    +A ++I  +  +P+ +IW +LL  C M G+++ GE  A +L ++EP N
Sbjct: 512 MIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPEN 571

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPET 585
            G Y++LSN+YA+ GRW +VA  R+ +  K +KK    S IEID+ VH+F+  D+ HP  
Sbjct: 572 PGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRN 631

Query: 586 EIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVT 645
             IY  L ++   L++AGF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    G T
Sbjct: 632 REIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG-T 690

Query: 646 PIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            + I+KN+RVC +CH   K  S I  R II RD  RFHHF  G CSC D W
Sbjct: 691 KLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 108/364 (29%), Positives = 183/364 (50%), Gaps = 50/364 (13%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHM-----DLNFYEPNTTFLHNRLLHF 68
           + S G       +  ++  C +    +  +++  H+     DL+ Y      +H  L+  
Sbjct: 125 MISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLY------VHTSLISM 178

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y ++G+L  A  +FDK P RD++S+ AL+  +A  G +++ + LFD++P++D VS+N  I
Sbjct: 179 YVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMI 238

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G+A  G  +EAL++F  M K    P + T V+ ++ACAQ   +  G+Q+H  I     G
Sbjct: 239 SGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFG 298

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            N+ + NAL D+Y+K GE++ A  LF+R+  ++++SWN +I GY      K+ + LFQEM
Sbjct: 299 SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEM 358

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-------------------------- 282
              G  P++VT+ +IL AC   G I D GR  HV                          
Sbjct: 359 LRSGETPNDVTMLSILPACAHLGAI-DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKC 417

Query: 283 ------------IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                       I  K    W  MI G+  +G+ + +  LF+ M    ++PD  +   ++
Sbjct: 418 GDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLL 477

Query: 331 SSCA 334
           S+C+
Sbjct: 478 SACS 481



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 183/421 (43%), Gaps = 74/421 (17%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW--- 212
           ++  +S L+ C  L  LR    IH +++   L    +  + L +        +   +   
Sbjct: 33  NHPSLSLLHNCKTLQSLR---IIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS 89

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +F  +   NL+ WN M  G+  +  P   + L+  M  LGL P+  T   +L +C     
Sbjct: 90  VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149

Query: 268 ------------------------------FQTGRIDD---------------------- 275
                                          Q GR++D                      
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209

Query: 276 ---------AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326
                    A +LF  I  KD V W  MI GY + G  ++AL LF +M+  +VRPD+ ++
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269

Query: 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT 386
            +VVS+CA+  S+  G+ VH      G   +L + +ALID+Y KCG  + A  +F  +P 
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ-N 445
           ++V+SWN++I GY       EAL L+ ++L+    P+  T +S+L AC H    + G+  
Sbjct: 330 KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWI 389

Query: 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMK 505
           H      + G+T +      +I++  +  D++ A  +  S+ HK  S  W+ ++   AM 
Sbjct: 390 HVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLS-SWNAMIFGFAMH 448

Query: 506 G 506
           G
Sbjct: 449 G 449



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/242 (23%), Positives = 118/242 (48%), Gaps = 27/242 (11%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD----AWTVFNM 383
           S++ +C  L SL   +++H + + +G+ +     S LI+ +C      +    A +VF  
Sbjct: 38  SLLHNCKTLQSL---RIIHAQMIKIGLHNTNYALSKLIE-FCILSPHFEGLPYAISVFKT 93

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           +   N++ WN+M  G+A +   + AL LY  ++   L P+S+TF  VL +C  +  F+ G
Sbjct: 94  IQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEG 153

Query: 444 QNHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
           Q        +HG    +   LD Y    +I++  ++  ++ A  +    PH+ + + ++ 
Sbjct: 154 QQ-------IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHR-DVVSYTA 205

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556
           L+   A +G I++    A+ LF+  P+ +   +  + + YA  G +++   +   M   N
Sbjct: 206 LIKGYASRGYIEN----AQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261

Query: 557 VK 558
           V+
Sbjct: 262 VR 263


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/689 (31%), Positives = 349/689 (50%), Gaps = 83/689 (12%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T L N L+  Y K G+L  A ++F  M  R+++SW AL                      
Sbjct: 39  TMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTAL---------------------- 76

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQK-DRFEPTDYTHVSALNACAQLLDLRRGKQ 177
                    + GF   G +   L++   M+      P +YT  ++L AC  + D   G  
Sbjct: 77  ---------MVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVG 127

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNG 236
           IHG  V      +  V ++L  +Y+KGG I  AR +FD       + +WN M+SGY   G
Sbjct: 128 IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 187

Query: 237 QPKKCIDLFQEMQL--LGLNPDEVTVSNILGACFQTG----------------------- 271
             +  + +F+EM+       PDE T +++L AC   G                       
Sbjct: 188 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 247

Query: 272 --------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
                         R+  A ++F  ++ K+ + WT ++VG+ Q G+  +AL LF      
Sbjct: 248 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 307

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
             RPD   +SSVV   A  A +  G+ VH   +      D+   ++++DMY KCG+ D+A
Sbjct: 308 GARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEA 367

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             +F  M   NVVSW +M+NG  ++G   EA+AL++++    ++PD  T++++LSAC HA
Sbjct: 368 ERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHA 427

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L +  + +F  I     + P  +HYACM++LLGR+ ++ +A DLI+++P +P   +W T
Sbjct: 428 GLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQT 487

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           LLS C +  D+  G  A   L  ++  N   Y+ LSN+ A  G W +   +R +M+ + +
Sbjct: 488 LLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKVRDAMRRRGL 547

Query: 558 KKFAAYSWIEIDNKVHKFV---SEDRTHPETEIIYEELSKLIKKLQEA-GFSP-NTKLVL 612
           KK    SW+E+  +VH F     E+ THP+   I   L  +  +++E  G++  + +  L
Sbjct: 548 KKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRDMETRMREQLGYNADDARFAL 607

Query: 613 HDTQEEEKVKSICYHSEKLALAYCLIKK-----PHGVTPIRIMKNIRVCGDCHLFMKFAS 667
           HD  EE + +S+  HSE+LA+   L++       HG  PIR+ KN+RVCGDCH F K  S
Sbjct: 608 HDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHG-EPIRVYKNLRVCGDCHEFFKGLS 666

Query: 668 DIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            ++ R +++RD+NRFH F  G+CSCKD W
Sbjct: 667 AVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 119/268 (44%), Gaps = 32/268 (11%)

Query: 23  EEAYTQLVLDCTRVNDVELAKRLQSHMDLN-FYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           E  +  L+  C+ +       ++ + M  + F   +   L   L+  Y K  +L  A  +
Sbjct: 210 EFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQV 269

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F+++  +++I W A++  HA+ G V                                EAL
Sbjct: 270 FERLERKNVIQWTAVVVGHAQEGQVT-------------------------------EAL 298

Query: 142 QVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201
           ++F R  +    P  +   S +   A    + +G+Q+H   +    G +V   N++ DMY
Sbjct: 299 ELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMY 358

Query: 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261
            K G  D+A  +F  M   N+VSW  M++G  K+G  ++ + LF+EM+  G+ PDEVT  
Sbjct: 359 LKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYL 418

Query: 262 NILGACFQTGRIDDAGRLFHVIKEKDNV 289
            +L AC   G +D+  R F  I+    V
Sbjct: 419 ALLSACSHAGLVDECRRYFSCIRRDRTV 446



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 144/290 (49%), Gaps = 10/290 (3%)

Query: 228 MISGYLK----NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283
           MI+G L+    +   +  + L   +  +G   D +  +N++    + G +D A  +F  +
Sbjct: 6   MIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGM 65

Query: 284 KEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDVRPDKFSISSVVSSCAKLASLYHG 342
           ++++ V WT ++VG+ ++G     L L  EM  + +  P+++++S+ + +C  +     G
Sbjct: 66  RDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAG 125

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMINGYAQ 401
             +HG  V  G  +  +V+S+L+ +Y K G   DA  VF+       + +WN+M++GYA 
Sbjct: 126 VGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAH 185

Query: 402 NGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
            G   +AL ++ ++ +     +PD FTF S+L AC        G     +++A    T S
Sbjct: 186 AGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTAS 245

Query: 460 LDHYA-CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDI 508
               A  ++++  +   +  A+ + + L  K N + W+ ++   A +G +
Sbjct: 246 NAILAGALVDMYVKCRRLPVAMQVFERLERK-NVIQWTAVVVGHAQEGQV 294


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/490 (39%), Positives = 300/490 (61%), Gaps = 6/490 (1%)

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEV 258
           MYA+ G  D A  +F+ M  R++VSWN MISG+   G   + +D+F+E+  L    PD  
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEML 315
           T+++IL +     R++D   L  V  E      + W  M+  YT N    +A+ LF  M 
Sbjct: 61  TMASILPS-MGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQ 119

Query: 316 SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375
            + + PD  ++++V+ SC ++++L  G+ +H       +   +L+ +AL+DMY  CG   
Sbjct: 120 KDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLK 179

Query: 376 DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435
           +A  VF+ M TR+VVSW S+I+ Y ++G   EA+ L++K+  + L+PDS  FV++L+AC 
Sbjct: 180 EARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACS 239

Query: 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIW 495
           HA L + G+++F S+++   I P L+HYACM++LLGR+  + +A D I  +P KPN  +W
Sbjct: 240 HAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVW 299

Query: 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555
             LL  C +  ++  G +AA  L  L P   G Y++LSN+YA  GRW DV+ +RS M+SK
Sbjct: 300 GALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESK 359

Query: 556 NVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615
            +KK    S  E+ + VH F   D +HP++++IY++LS+L+++++E G++P  +  LHD 
Sbjct: 360 GIKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDV 419

Query: 616 QEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTII 675
           +EE+K   +  HSEKLA+A+ LI    G TPIRI  N+R C DCH   K  S I GR II
Sbjct: 420 EEEDKEGHLSVHSEKLAIAFLLINTNPG-TPIRITMNLRTCSDCHHAAKLISTIAGREII 478

Query: 676 LRDSNRFHHF 685
           L+D NR H+ 
Sbjct: 479 LKDVNRIHYM 488



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 38/252 (15%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSG----------------------- 104
            YA+ G+   A  +F++M  RD++SWNA++S  A +G                       
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAG 60

Query: 105 ------------SVQD---LRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQK 149
                        V+D   L+ +FD+M     +S+N  +A + N     EA+++F RMQK
Sbjct: 61  TMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQK 120

Query: 150 DRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDK 209
           D  EP   T  + L +C ++  L  GK+IH  I    +  ++ + NAL DMYA  G + +
Sbjct: 121 DGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKE 180

Query: 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269
           AR +FD M  R++VSW  +IS Y ++G  ++ IDLF++M   GL PD +    IL AC  
Sbjct: 181 ARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSH 240

Query: 270 TGRIDDAGRLFH 281
            G +D     F+
Sbjct: 241 AGLLDMGKHYFY 252



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 5/108 (4%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  V+ + L KR+   +       ++  L N L+  YA  G L  ARD+FD M  RD++S
Sbjct: 137 CGEVSALSLGKRIHEVIKRRRM-CSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVS 195

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIR----DSVSYNTAIAGFANKGF 136
           W +++SA+ R G  ++   LF+KM  +    DS+++   +A  ++ G 
Sbjct: 196 WTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGL 243


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/556 (35%), Positives = 308/556 (55%), Gaps = 36/556 (6%)

Query: 176  KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
            K+ H KI    L  +  +      MY     ID A  +F+ + N     WN+MI G+  +
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 236  GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF--------------------------- 268
            G+    ++L+ +M   GL PD+      L +C                            
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 269  --------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                    + G I+ A  +F  +  +D V WT+MI GY  NG   + L  F+ M S  V 
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 321  PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380
            P++ SI SV+ +C  L +L  G+  H   +  G + D+LV++A++DMY KCG  D A  +
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCL 976

Query: 381  FNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440
            F+    +++V W++MI  Y  +G   +A+ L+D++++  ++P   TF  VLSAC H+ L 
Sbjct: 977  FDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLL 1036

Query: 441  ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            E G+ +F  ++    I   L +YACM++LLGR+  + +AVDLI+++P +P++ IW +LL 
Sbjct: 1037 EEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLG 1096

Query: 501  VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
             C +  ++   E  A HLF L+P++AG +++LSN+YAA  RW +V  +R  M  +   K 
Sbjct: 1097 ACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKI 1156

Query: 561  AAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK 620
              +S +E DN+VHKF   DR+HP+ E +Y +L +L   ++  G+ P T  VLHD +EE K
Sbjct: 1157 QGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAK 1216

Query: 621  VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680
              ++ YHSE+LA+A+ LI    G T +RI KN+R+CGDCH  +K  S I+ R I++RD +
Sbjct: 1217 EAALSYHSERLAIAFGLINTSPGTT-LRITKNLRICGDCHNAIKLISKIVNRVILVRDMH 1275

Query: 681  RFHHFVGGNCSCKDNW 696
            RFH F  G CSC D W
Sbjct: 1276 RFHRFEDGVCSCGDYW 1291



 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/564 (32%), Positives = 314/564 (55%), Gaps = 37/564 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM- 147
           D+   +AL+  +++ G + +   +F++    D+V + + + G+       EAL +FS+M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
             D       T VS ++ACAQLL+++ G  +HG ++     G++ + N+L ++YAK G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  LF +M  ++++SW+ MI+ Y  N    + ++LF EM      P+ VTV + L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 268 -----FQTGR------------------------------IDDAGRLFHVIKEKDNVCWT 292
                 + G+                               D+A  LF  + +KD V W 
Sbjct: 318 AVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWV 377

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            ++ GY QNG    ++ +F  MLS+ ++PD  ++  ++++ ++L        +HG  V  
Sbjct: 378 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS 437

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
           G + ++ V ++LI++Y KCG   DA  +F  M  R+VV W+SMI  Y  +G+  EAL ++
Sbjct: 438 GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIF 497

Query: 413 DKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           D++++ + ++P++ TF+S+LSAC HA L E G   FD +   + + P  +H+  M++LLG
Sbjct: 498 DQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLG 557

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531
           R   + KA+D+I  +P      +W  LL  C +  +I+ GE AA++LF L+P +AG YI+
Sbjct: 558 RIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYIL 617

Query: 532 LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEE 591
           LSN+YA  G+W++VA +R+ +K + +KK    S +E+   VH F++ DR HP+++ IYE 
Sbjct: 618 LSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYEL 677

Query: 592 LSKLIKKLQEAGFSPNTKLVLHDT 615
           L KL  ++ +  + P+   +LHDT
Sbjct: 678 LRKLEAQMGKEVYIPDLDFLLHDT 701



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/464 (28%), Positives = 231/464 (49%), Gaps = 40/464 (8%)

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +F    L D      L S +A+  S+Q  R +FD+ P  +   +N+ +  +  +    E 
Sbjct: 27  VFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEET 86

Query: 141 LQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN-LGGNVFVRNALT 198
           L++F  M     E P ++T   AL ACA L  L  GK IHG     + +G ++FV +AL 
Sbjct: 87  LRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALV 146

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDE 257
           ++Y+K G++ +A  +F+     + V W  M++GY +N  P++ + LF +M ++  +  D 
Sbjct: 147 ELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDP 206

Query: 258 VTVSNILGACFQ-----------------------------------TGRIDDAGRLFHV 282
           VT+ +++ AC Q                                   TG    A  LF  
Sbjct: 207 VTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSK 266

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + EKD + W+TMI  Y  N    +AL LF+EM+ +   P+  ++ S + +CA   +L  G
Sbjct: 267 MPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEG 326

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           + +H  AV  G + D  VS+ALIDMY KC   D+A  +F  +P ++VVSW ++++GYAQN
Sbjct: 327 KKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQN 386

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G   +++ ++  +L + ++PD+   V +L+A     +F++            G   ++  
Sbjct: 387 GMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALC-LHGYVVRSGFNSNVFV 445

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            A +I L  +   +  AV L K +  + + +IWS++++   + G
Sbjct: 446 GASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHG 488



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/372 (29%), Positives = 178/372 (47%), Gaps = 40/372 (10%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R   Q+H ++    +  + F    L  +YAK   +  AR +FD   + N+  WN  +  Y
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 233 LKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGACF----------------------- 268
            +  Q ++ + LF  M    G  PD  T+   L AC                        
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGS 137

Query: 269 -------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
                        + G++ +A ++F   +  D V WT+M+ GY QN   E+AL LF++M+
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 316 SED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT 374
             D V  D  ++ SVVS+CA+L ++  G  VHG  +    D DL + ++L+++Y K G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 375 DDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
             A  +F+ MP ++V+SW++MI  YA N    EAL L+ +++++  +P+S T VS L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI 494
             +   E G+     I+   G          +I++  + S  D+AVDL + LP K + + 
Sbjct: 318 AVSRNLEEGKK-IHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP-KKDVVS 375

Query: 495 WSTLLSVCAMKG 506
           W  LLS  A  G
Sbjct: 376 WVALLSGYAQNG 387



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 134/480 (27%), Positives = 209/480 (43%), Gaps = 97/480 (20%)

Query: 40   ELAKRLQSHMDLNFYEPNTTFL---HNRLLHFYAKSGKLFYARDLFDKMPLRDIIS-WNA 95
            EL ++L++ M    Y P+  FL      +L F+ +              P  D IS ++ 
Sbjct: 676  ELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQFWQRIKATESKYKTIGSAPGTDTISCFSC 735

Query: 96   LLSAHAR---SGSVQDLRAL-------------------FDKMPIRDSVSYNTAIAGFAN 133
            L   HA+    G   D R L                   F+ +P   S  +N  I GFA 
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 134  KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
             G    +L+++S+M +   +P  +    AL +CA L DL+RGK IH  +V      ++FV
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 194  RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
              AL DMYAK G+I+ AR +FD+M  R+LVSW  MISGY  NG   + +  F  M+  G+
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 254  NPDEVTVSNILGAC----------------FQT-------------------GRIDDAGR 278
             P+ V++ ++L AC                 QT                   G +D A  
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 279  LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
            LF     KD VCW+ MI  Y  +G    A+ LF++M+   VRP   + + V+S+C+    
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS---- 1031

Query: 339  LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
             + G +  GK     + ++ +++  L +  C                         M++ 
Sbjct: 1032 -HSGLLEEGKMYFQLMTEEFVIARKLSNYAC-------------------------MVDL 1065

Query: 399  YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LH--ADLFERGQNHFDSISAVHG 455
              + GQ  EA+ L + +  E   PD+  + S+L AC +H   DL E+  +H   +  VH 
Sbjct: 1066 LGRAGQLSEAVDLIENMPVE---PDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHA 1122



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 90/211 (42%), Gaps = 17/211 (8%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +    G+  D   ++ L  +Y KC     A  VF+  P  NV  WNS +  Y +  Q
Sbjct: 23  LHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQ 82

Query: 405 DLEALALYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
             E L L+  ++      PD+FT    L AC    + E G+        +HG     D  
Sbjct: 83  WEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGK-------VIHGFAKKNDEI 135

Query: 464 -------ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
                  + ++ L  +   + +A+ + +    +P++++W+++++      D +       
Sbjct: 136 GSDMFVGSALVELYSKCGQMGEALKVFEEF-QRPDTVLWTSMVTGYQQNNDPEEALALFS 194

Query: 517 HLFELEPINAGPYIMLSNMYAACGRWEDVAS 547
            +  ++ +   P + L ++ +AC +  +V +
Sbjct: 195 QMVMMDCVVLDP-VTLVSVVSACAQLLNVKA 224



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           +  F+   L+  Y+K G L  A  LF  M +RD++ W+++++A+   G   +   +FD+M
Sbjct: 441 SNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQM 500

Query: 117 ----PIR-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
                +R ++V++ + ++  ++ G   E L++F RM  D     D  H
Sbjct: 501 VKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEH 548


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/654 (34%), Positives = 352/654 (53%), Gaps = 69/654 (10%)

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL 170
           ++F+ +   + + +NT   G A    S  AL+++  M      P  Y+    L +CA+  
Sbjct: 20  SIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAKSK 79

Query: 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE------------------------ 206
            L  G+QIHG ++      +++V  +L  MYA+ G                         
Sbjct: 80  ALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALIT 139

Query: 207 -------IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
                  I+ AR LFD ++ +++VSWN MISGY++    K+ ++L+++M    + PDE T
Sbjct: 140 GYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDEST 199

Query: 260 VSNILGACFQTGRID-----------------------------------DAGRLFHVIK 284
           +  ++ AC Q+G I+                                    A  LF  + 
Sbjct: 200 MVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLA 259

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           +KD + W T+I G+T     ++AL+LF EML     P+  ++ SV+ +CA L ++  G+ 
Sbjct: 260 KKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRW 319

Query: 345 VHG--KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +H      + GV +   + ++LIDMY KCG  + A  VF+ M TR++ SWN+MI G+A +
Sbjct: 320 IHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMH 379

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+   A  L+ K+ +  + PD  TFV +LSAC H+ + + G++ F S+S  + ITP L+H
Sbjct: 380 GKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEH 439

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y CMI+LLG      +A ++I+++P +P+ +IW +LL  C M  +++ GE  A++L ++E
Sbjct: 440 YGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIE 499

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P N G Y++LSN+YA  GRW+ VA IR+ +  K +KK    S IEID+ VH+F+  D+ H
Sbjct: 500 PENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFH 559

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           P    IY  L ++   ++E GF P+T  VL + +EE K  ++ +HSEKLA+A+ LI    
Sbjct: 560 PRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKP 619

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T + I+KN+RVC +CH   K  S I  R II RD  R H    G  SC D W
Sbjct: 620 G-TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 87/189 (46%), Gaps = 19/189 (10%)

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436
           A ++F  +   N++ WN+M  G+A N   + AL LY  ++   L P+S++F  +L +C  
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 437 ADLFERGQNHFDSISAVHG----ITPSLDHY--ACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +     GQ        +HG    +   LD Y    +I++  ++  ++ A  +     H+ 
Sbjct: 78  SKALIEGQQ-------IHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHR- 129

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSNMYAACGRWEDVASIR 549
           + + ++ L++  A +G I +    AR LF E+   +   +  + + Y     +++   + 
Sbjct: 130 HVVSYTALITGYASRGYINN----ARKLFDEISVKDVVSWNAMISGYVETCNFKEALELY 185

Query: 550 SSMKSKNVK 558
             M   NVK
Sbjct: 186 KDMMKTNVK 194


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/639 (33%), Positives = 349/639 (54%), Gaps = 43/639 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ +A+ G V   R +FD M + D +S+N  IAG    G     L++F  M +D  +
Sbjct: 234 NALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQ 293

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  S   A   L D+   K++HG  V      +V   N+L  MYA  G + +AR +
Sbjct: 294 PNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTV 353

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT-------------- 259
           F RM+ R+ +SW  MISGY KNG P K ++++  M++  ++PD++T              
Sbjct: 354 FSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSL 413

Query: 260 --------------------VSNILGACF-QTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298
                               V+N L   + ++ RID A  +F  + EKD V W++MI G+
Sbjct: 414 DVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGF 473

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             N +  +AL  F  ML+ DV+P+  +  + +++CA   +L  G+ +H   +  G+  + 
Sbjct: 474 CFNHRNFEALYYFRHMLA-DVKPNSVTFIAALAACAATGALRSGKEIHAHVLRCGIAYEG 532

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            + +ALID+Y KCG T  AW  F     ++VVSWN MI G+  +G    AL+ ++++++ 
Sbjct: 533 YLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMIAGFVAHGNGETALSFFNQMVKI 592

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
              PD  TFV++L AC    +   G   F S++  + I P+L HYACM++LL R   + +
Sbjct: 593 GECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSIVPNLKHYACMVDLLSRVGQLTE 652

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I  +P  P++ +W  LL+ C +   ++ GE+AA+++ ELEP +AG +++L ++YA 
Sbjct: 653 AYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAKYVLELEPNDAGYHVLLCDLYAD 712

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W+ +A +R +M+ K +   +  SW+E+   VH F+++D +HP+   I   L  + ++
Sbjct: 713 AGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFLTDDESHPQIREINTVLEGIYER 772

Query: 599 LQEAGFSPNTKLVLHDTQEEEKVKS--ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVC 656
           ++ +G +P    V   + E++ +K    C HSE+LA+A+ LI    G T I + KN   C
Sbjct: 773 MKASGCAP----VESHSPEDKVLKDDIFCGHSERLAVAFGLINTTPG-TSISVTKNQYTC 827

Query: 657 GDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDN 695
             CH  +K  S I+ R II+RDS + HHF  G+CSC D 
Sbjct: 828 QSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGDE 866



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 211/458 (46%), Gaps = 68/458 (14%)

Query: 6   KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRL 65
           +L QA+  L S  +   E+AY  L   C     VE   R  +H D            +R 
Sbjct: 77  QLAQALWLLESSAEPPDEDAYVALFRLCEWRRAVEPGLRACAHAD------------DRH 124

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
             F  + G                    NA+LS   R G       +F KMP RD  S+N
Sbjct: 125 AWFGLRLG--------------------NAMLSMLVRFGETWHAWRVFAKMPERDVFSWN 164

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             + G+   G   EAL ++ RM      P  YT    L +C  + D R G+++H  ++  
Sbjct: 165 VMVGGYGKAGLLEEALDLYHRMMWAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRF 224

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
                V V NAL  MYAK G++  AR +FD M   + +SWN MI+G+ +NG+    ++LF
Sbjct: 225 GFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELF 284

Query: 246 QEMQLLGLNPDEVTVSNILGAC--------------------FQT--------------- 270
             M    + P+ +T++++  A                     F T               
Sbjct: 285 LTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASL 344

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
           G +  A  +F  +  +D + WT MI GY +NG  + AL ++  M   +V PD  +I+S +
Sbjct: 345 GMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDITIASAL 404

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA L SL  G  +H  A   G    ++V++AL++MY K    D A  VF  MP ++VV
Sbjct: 405 AACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVV 464

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
           SW+SMI G+  N ++ EAL  +  +L  ++KP+S TF+
Sbjct: 465 SWSSMIAGFCFNHRNFEALYYFRHMLA-DVKPNSVTFI 501



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 44/350 (12%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N+L+  +A  G +   R +F +M  RD++S+   I+G+   GF  +AL+V++ M+
Sbjct: 330 DVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALME 389

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
            +   P D T  SAL ACA L  L  G ++H           V V NAL +MYAK   ID
Sbjct: 390 VNNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRID 449

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT--------- 259
           KA  +F  M  +++VSW+ MI+G+  N +  + +  F+ M L  + P+ VT         
Sbjct: 450 KAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACA 508

Query: 260 -----------------------------VSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290
                                        + ++   C QTG    A   F     KD V 
Sbjct: 509 ATGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGY---AWAQFCAHGAKDVVS 565

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKA 349
           W  MI G+  +G  E AL  FN+M+     PD+ +  +++ +C++   +  G ++ H   
Sbjct: 566 WNIMIAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMT 625

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVSWNSMING 398
               +  +L   + ++D+  + G   +A+   N MP T +   W +++NG
Sbjct: 626 DKYSIVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNG 675



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           L + +A++ M  + G T  AW VF  MP R+V SWN M+ GY + G   EAL LY +++ 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMW 188

Query: 418 ENLKPDSFTFVSVLSAC 434
             ++PD +TF  VL +C
Sbjct: 189 AGVRPDVYTFPCVLRSC 205


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/574 (34%), Positives = 322/574 (56%), Gaps = 51/574 (8%)

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           Y   I G     +  + + ++ +M      P  Y   S L AC   L L+ G+++H +++
Sbjct: 98  YTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVL 157

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              L  N  +R  L ++Y K G  + AR +FD M  R++V+  +MI+ Y  +G       
Sbjct: 158 KLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI------ 211

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                                     KD VCWT MI G  +NG+
Sbjct: 212 ------------------------------------------KDTVCWTAMIDGLVRNGE 229

Query: 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363
              AL +F  M  EDV P++ +I  V+S+C++L +L  G+ V        ++ +  V  A
Sbjct: 230 SNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHFVGGA 289

Query: 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423
           LI+MY +CG  D+A  VF  M  +NV+++NSMI G+A +G+ +EA+ L+  L+++   P 
Sbjct: 290 LINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPS 349

Query: 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483
           S TFV VL+AC H  L E G   F S++  +GI P ++HY CM++LLGR   +++A   I
Sbjct: 350 SVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFI 409

Query: 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543
           + +   P+ ++   LLS C + G+++  E  A+ L   +  ++G YI+LSN Y++ G+W+
Sbjct: 410 RMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNADSGTYILLSNAYSSSGKWK 469

Query: 544 DVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603
           + A +R++M+ + ++K    S IE++N++H+F+  D  HP+ E IY++L +L + L+  G
Sbjct: 470 EAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEG 529

Query: 604 FSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHLF 662
           ++P T++VLHD ++ EK  ++  HSE+LA+ Y LI  KP  +T +R++KN+RVC DCHL 
Sbjct: 530 YTPATEVVLHDIEKSEKEWALAIHSERLAICYGLISTKP--LTTLRVVKNLRVCNDCHLT 587

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +K  S+I  R I++RD NRFHHF  G CSC D W
Sbjct: 588 IKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 140/275 (50%), Gaps = 21/275 (7%)

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           +L+  Y K G    AR +FD+MP RD+++   +++ +   G             I+D+V 
Sbjct: 170 KLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHG-------------IKDTVC 216

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +   I G    G S  AL+VF  MQ++   P + T V  L+AC++L  L+ G+ +   + 
Sbjct: 217 WTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMD 276

Query: 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243
              +  N FV  AL +MY++ G+ID+A+ +F++M  +N++++N MI G+  +G+  + ++
Sbjct: 277 KHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVE 336

Query: 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGY 298
           LF+ +   G  P  VT   +L AC   G  +    +FH + +   +      +  M+   
Sbjct: 337 LFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLL 396

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            + G+ E+A      M    V PD   + +++S+C
Sbjct: 397 GRLGRLEEAYSFIRMM---KVAPDHVMLGALLSAC 428


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/450 (40%), Positives = 288/450 (64%), Gaps = 5/450 (1%)

Query: 251 LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
            GL  D    ++++     +G +D A  LF V+ E++ + W+ MI GY + G+ ++AL L
Sbjct: 93  FGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALAL 152

Query: 311 FNEML---SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367
           F EM      DVRP++F++S V+++C +L +L HG+  H      G+  D+++ +ALIDM
Sbjct: 153 FREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDM 212

Query: 368 YCKCGVTDDA-WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           Y KCG  + A W   N+ P ++V++W++MI+G A +G   E + L+ K++ + ++P++ T
Sbjct: 213 YAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVT 272

Query: 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486
           F++V  AC+H  L   G+++   ++  + I P++ HY CM++L GR+  + +A +++KS+
Sbjct: 273 FLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSM 332

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546
           P +P+ L+W  LLS   M GDI+  E+A + L ELEP N+G Y++LSN+YA  GRWEDV 
Sbjct: 333 PMEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVR 392

Query: 547 SIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP 606
            +R  M++  +KK    S IE+   +H+F   D +HPET  I+  L +++++L+  G+  
Sbjct: 393 HVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVG 452

Query: 607 NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFA 666
           NTK VL D  EE K  ++  HSEKLALAY  +K   G TPIRI+KN+R+C DCH+ +K  
Sbjct: 453 NTKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPG-TPIRIVKNLRICRDCHVAIKMI 511

Query: 667 SDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           S +  R II+RD NRFHHF  G CSC+D W
Sbjct: 512 SKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 171/363 (47%), Gaps = 57/363 (15%)

Query: 117 PIRDSVSYNTAIAGFAN-----KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           P  +S  +NT I           G +   + +F RM+    +P  +T    L + A    
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSL 79

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G+ +H +I+   L  + FV+ +L  MY+  G +D AR LF  M  RN++SW+ MI+G
Sbjct: 80  LHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMING 139

Query: 232 YLKNGQPKKCIDLFQEMQLLGLN---PDEVTVSNILGACFQTGR----------IDDAGR 278
           Y++ GQ K+ + LF+EMQ+LG+N   P+E T+S +L AC + G           ID  G 
Sbjct: 140 YVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM 199

Query: 279 LFHVI--------------------------KEKDNVCWTTMIVGYTQNGKEEDALILFN 312
              V+                            KD + W+ MI G   +G  E+ + LF+
Sbjct: 200 PVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFS 259

Query: 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV------SSALID 366
           +M+++ VRP+  +  +V  +C     ++ G V  GK  +  + +D  +         ++D
Sbjct: 260 KMINQGVRPNAVTFLAVFCAC-----VHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVD 314

Query: 367 MYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425
           +Y + G   +AW V   MP   +V+ W ++++G   +G D+E   L  K L E    +S 
Sbjct: 315 LYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG-DIETCELALKKLIELEPTNSG 373

Query: 426 TFV 428
            +V
Sbjct: 374 AYV 376



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 136/291 (46%), Gaps = 42/291 (14%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F+   L+  Y+ SG +  AR+LF  MP R++ISW+ +++ + R G  ++  ALF +M + 
Sbjct: 100 FVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQM- 158

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
                                      +  +   P ++T    L AC +L  L  GK  H
Sbjct: 159 ---------------------------LGVNDVRPNEFTMSGVLAACGRLGALEHGKWAH 191

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQP 238
             I    +  +V +  AL DMYAK G ++KA W+F  +  N+++++W+ MISG   +G  
Sbjct: 192 AYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLA 251

Query: 239 KKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT----- 293
           ++C+ LF +M   G+ P+ VT   +  AC   G + +       + E  ++  T      
Sbjct: 252 EECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGC 311

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
           M+  Y + G+ ++A   +N + S  + PD     +++S      S  HG +
Sbjct: 312 MVDLYGRAGRIKEA---WNVVKSMPMEPDVLVWGALLS-----GSRMHGDI 354



 Score = 46.2 bits (108), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 118/288 (40%), Gaps = 25/288 (8%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM-PLRDII 91
           C R+  +E  K   +++D     P    L   L+  YAK G +  A  +F  + P +D++
Sbjct: 178 CGRLGALEHGKWAHAYID-KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVM 236

Query: 92  SWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTAIAGFANKGFSREALQVFSRM 147
           +W+A++S  A  G  ++   LF KM    +R ++V++        + G   E      RM
Sbjct: 237 AWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRM 296

Query: 148 QKDRFEPTDYTHVSALNACAQLLDL--RRGKQIHGKIVVGNLG--GNVFVRNALTDMYAK 203
            +      DY+ +  +     ++DL  R G+      VV ++    +V V  AL      
Sbjct: 297 TE------DYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRM 350

Query: 204 GGEIDKARWLFDR---MNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP----D 256
            G+I+       +   +   N  ++ L+ + Y K G+ +    +   M+ +G+       
Sbjct: 351 HGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCS 410

Query: 257 EVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
            + V  +L   F         R  H++ E+  +     + GY  N KE
Sbjct: 411 LIEVGGVLHEFFVGDDSHPETRQIHMMLEE--ILERLKVEGYVGNTKE 456


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/538 (36%), Positives = 309/538 (57%), Gaps = 35/538 (6%)

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           +F+ N L +MY K   ++ A  LFD+M  RN++SW  MIS Y K    +K ++L   M  
Sbjct: 96  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 155

Query: 251 LGLNPDEVTVSNILGAC--------------------------------FQTGRIDDAGR 278
             + P+  T S++L +C                                 + G  +DA  
Sbjct: 156 DNVRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALS 215

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +   D + W ++I G+ QN + + AL LF  M       ++ +++SV+ +C  LA 
Sbjct: 216 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 275

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G   H    ++  D DL++++AL+DMYCKCG  +DA  VFN M  R+V++W++MI+G
Sbjct: 276 LELGMQAH--VHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISG 333

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            AQNG   EAL L++++     KP+  T V VL AC HA L E G  +F S+  ++GI P
Sbjct: 334 LAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDP 393

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             +HY CMI+LLG++  +D AV L+  +  +P+++ W TLL  C ++ ++   E AA+ +
Sbjct: 394 VREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 453

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
             L+P +AG Y +LSN+YA   +W+ V  IR+ M+ + +KK    SWIE++ ++H F+  
Sbjct: 454 IALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIG 513

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP+   + ++L++LI +L   G+ P T  VL D + E+   S+ +HSEKLALA+ L+
Sbjct: 514 DNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 573

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P     IRI KN+R+CGDCH+F K AS +  R+I++R   R+HHF  G CSC D W
Sbjct: 574 TLPIEKV-IRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 116/425 (27%), Positives = 195/425 (45%), Gaps = 70/425 (16%)

Query: 9   QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           +A+D+L S G  A    Y++L+  C     V     +  H+  N + P   FL N L++ 
Sbjct: 47  KAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRP-MMFLVNVLINM 105

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           Y K                     +N L  AH           LFD+MP R+ +S+ T I
Sbjct: 106 YVK---------------------FNLLNDAHQ----------LFDQMPQRNVISWTTMI 134

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           + ++     ++AL++   M +D   P  YT+ S L +C  + D+R    +H  I+   L 
Sbjct: 135 SAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVR---MLHCGIIKEGLE 191

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
            +VFVR+AL D++AK GE + A  +FD M   + + WN +I G+ +N +    ++LF+ M
Sbjct: 192 SDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRM 251

Query: 249 QLLGLNPDEVTVSNILGACF---------------------------------QTGRIDD 275
           +  G   ++ T++++L AC                                  + G ++D
Sbjct: 252 KRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLED 311

Query: 276 AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335
           A R+F+ +KE+D + W+TMI G  QNG  ++AL LF  M S   +P+  +I  V+ +C+ 
Sbjct: 312 ALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSH 371

Query: 336 LASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWN 393
              L  G         + G+D        +ID+  K G  DDA  + N M    + V+W 
Sbjct: 372 AGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWR 431

Query: 394 SMING 398
           +++  
Sbjct: 432 TLLGA 436



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 141/273 (51%), Gaps = 10/273 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+   A+ G  +D  ++FD+M   D++ +N+ I GFA    S  AL++F RM+
Sbjct: 193 DVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 252

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  F     T  S L AC  L  L  G Q H  IV      ++ + NAL DMY K G ++
Sbjct: 253 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLE 310

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F++M  R++++W+ MISG  +NG  ++ + LF+ M+  G  P+ +T+  +L AC 
Sbjct: 311 DALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACS 370

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++D    F  +K+   +      +  MI    + GK +DA+ L NEM  E   PD 
Sbjct: 371 HAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECE---PDA 427

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            +  +++ +C    ++   +    K + L  +D
Sbjct: 428 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 460



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 155/308 (50%), Gaps = 18/308 (5%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G  P    V+ ++    +   ++DA +LF  + +++ + WTTMI  Y++    + AL L 
Sbjct: 91  GHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELL 150

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML ++VRP+ ++ SSV+ SC  ++ +   +++H   +  G++ D+ V SALID++ K 
Sbjct: 151 VLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKL 207

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA +VF+ M T + + WNS+I G+AQN +   AL L+ ++ +     +  T  SVL
Sbjct: 208 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVL 267

Query: 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYA--CMINLLGRSSDVDKAVDLIKSLPHK 489
            AC    L E G       + VH +    D      ++++  +   ++ A+ +   +  +
Sbjct: 268 RACTGLALLELGMQ-----AHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322

Query: 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAAC---GRWEDV 545
            + + WST++S  A  G   + + A +    ++     P YI +  +  AC   G  ED 
Sbjct: 323 -DVITWSTMISGLAQNG---YSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 546 ASIRSSMK 553
                SMK
Sbjct: 379 WYYFRSMK 386



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 63/378 (16%)

Query: 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366
           A+   + + S  +  D  + S ++  C    +++ G ++       G    + + + LI+
Sbjct: 45  AMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLIN 104

Query: 367 MYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426
           MY K  + +DA  +F+ MP RNV+SW +MI+ Y++     +AL L   +L++N++P+ +T
Sbjct: 105 MYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYT 164

Query: 427 FVSVLSAC--------LHA------------------DLFERGQNHFDSISAV-HGITPS 459
           + SVL +C        LH                   D+F +     D++S     +T  
Sbjct: 165 YSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGD 224

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV---CAMKGDIKHGEMAAR 516
              +  +I    ++S  D A++L K +         +TL SV   C     ++ G  A  
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 517 HLFELEP---INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
           H+ + +    +N      L +MY  CG  ED   + + MK ++V  ++      I     
Sbjct: 285 HIVKYDQDLILNNA----LVDMYCKCGSLEDALRVFNQMKERDVITWSTM----ISGLAQ 336

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
              S            +E  KL ++++ +G  PN   ++        V   C H+  L  
Sbjct: 337 NGYS------------QEALKLFERMKSSGTKPNYITIV-------GVLFACSHAGLLED 377

Query: 634 AYCL---IKKPHGVTPIR 648
            +     +KK +G+ P+R
Sbjct: 378 GWYYFRSMKKLYGIDPVR 395



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 94/185 (50%), Gaps = 16/185 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  NAL+  + + GS++D   +F++M  RD ++++T I+G A  G+S+EAL++F RM
Sbjct: 291 QDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

Query: 148 QKDRFEPTDYTHVSALNAC--AQLLD-----LRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +    +P   T V  L AC  A LL+      R  K+++G   V    G       + D+
Sbjct: 351 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYG------CMIDL 404

Query: 201 YAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
             K G++D A  L + M    + V+W  ++       Q    +  +   +++ L+P++  
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVIALDPEDAG 462

Query: 260 VSNIL 264
              +L
Sbjct: 463 TYTLL 467


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/588 (34%), Positives = 326/588 (55%), Gaps = 42/588 (7%)

Query: 112 LFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD 171
           LF ++   +   Y+  I  +A  G    ++++++ M  +   P  +T  SAL +  +   
Sbjct: 68  LFSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFT-FSALFSLLKNPS 126

Query: 172 LRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           L  G Q+H    +     +++V N +  MY K G +D AR +FD M +R++V+W  +I  
Sbjct: 127 L--GSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVA 184

Query: 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291
           Y ++G                                    +D A  LF  +  KD V W
Sbjct: 185 YARSGD-----------------------------------MDSACELFVGLPVKDMVAW 209

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH--GKA 349
           T+M+ GY+QN   + AL  F +M    V  D+ ++   +S+CA+L    +   +    ++
Sbjct: 210 TSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIAES 269

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
              G   ++ V SALIDMY KCG  ++A+ VF  M   NV S++SMI G+A +G+   A+
Sbjct: 270 SRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRARSAI 329

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
            L+ ++L+  +KP+  TFV + +AC HA + E+GQ  F ++   +G++P+ DHYACM +L
Sbjct: 330 KLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADL 389

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           LGR+  ++KA+ L++++P +PN  +W  LL    + G+    E+A+R LFELEP N G Y
Sbjct: 390 LGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNLGNY 449

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK-VHKFVSEDRTHPETEII 588
           ++LS  YA   +W+DV+ +R  M+ K ++K    SW+E  N  +H+F + D  HPE   I
Sbjct: 450 LLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEINEI 509

Query: 589 YEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIR 648
            + L  L+++L+  G+ P    V +D  +E K   +  HSEKLALAY L+    G T I+
Sbjct: 510 KKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGST-IK 568

Query: 649 IMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           IMKN+R+C DCH+ M  AS + GR II+RD+ RFHHF+ G CSC + W
Sbjct: 569 IMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 139/250 (55%), Gaps = 9/250 (3%)

Query: 41  LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH 100
           L  +L  H  L F   N  ++ N ++H Y K G L  AR +FD+MP RD+++W  L+ A+
Sbjct: 127 LGSQLHLHAFL-FGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAY 185

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV 160
           ARSG +     LF  +P++D V++ + + G++     ++ALQ F +M++      + T V
Sbjct: 186 ARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLV 245

Query: 161 SALNACAQL-----LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
            A++ACAQL      D  R  +I      G+ G NVFV +AL DMY+K G +++A  +F 
Sbjct: 246 GAISACAQLGVSGYADWIR--EIAESSRFGS-GSNVFVGSALIDMYSKCGNVEEAYNVFK 302

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275
            M   N+ S++ MI G+  +G+ +  I LF EM   G+ P+ VT   +  AC   G ++ 
Sbjct: 303 GMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQ 362

Query: 276 AGRLFHVIKE 285
             +LF  +KE
Sbjct: 363 GQQLFGAMKE 372


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 357/653 (54%), Gaps = 49/653 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            D+     L++ +++ G ++    +FD +P R+  ++ T + G+        ALQ+F +M
Sbjct: 97  EDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKM 156

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +    P++YT    LNAC+ L  +  GKQ+H  ++  ++  +  + N+L+  Y+K   +
Sbjct: 157 LEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRL 216

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A   F  +  ++++SW  +IS    NGQ  + +  F +M   G+ P+E T++++L AC
Sbjct: 217 EFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 276

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G + +A +LF  ++  + V W 
Sbjct: 277 CVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWN 336

Query: 293 TMIVGYTQ--NGKEED---------ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            MI G+ +  +  E+D         AL +F ++    ++PD F+ SSV+S C+ L +L  
Sbjct: 337 AMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQ 396

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +HG+ +  GV  D++V +AL+ MY KCG  D A   F  MP+R ++SW SMI G+A+
Sbjct: 397 GEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFAR 456

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G   +AL L++ +    +KP+  TFV VLSAC HA L +    +F+ +   + I P +D
Sbjct: 457 HGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMD 516

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           H+AC+I++  R   V++A D++  +  +PN  IWS L++ C   G    G  AA  L +L
Sbjct: 517 HFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKL 576

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           +P +   Y+ L NM+ + GRW+DV+ +R  MK + V K   +SWI I  KV+ F   D++
Sbjct: 577 KPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKS 636

Query: 582 HPETEIIYEELSKLIKKLQEAGFSP--NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
           H ++  +Y+ L  ++ +++  G+ P  + +++  +  EE  + S   HSEKLA+A+ L+ 
Sbjct: 637 HCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLN 696

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
            P   TPIR++K+I +C DCH F++F S + GR I++RDS + H F+ G CSC
Sbjct: 697 LPTA-TPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSC 748



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 173/325 (53%), Gaps = 29/325 (8%)

Query: 14  LYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + S G    E   T ++  C  +  ++L  ++ S + +     ++  + N +++ Y K G
Sbjct: 257 MLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS-LSIKLGYGSSILIKNSIMYLYLKCG 315

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
            L  A+ LF+ M   ++++WNA+++ HA+   + DL          D V+        A+
Sbjct: 316 WLIEAQKLFEGMETLNLVTWNAMIAGHAK---MMDLA--------EDDVA--------AH 356

Query: 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193
           K  S  AL +F ++ +   +P  +T  S L+ C+ L+ L +G+QIHG+I+   +  +V V
Sbjct: 357 KSGS-TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVV 415

Query: 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             AL  MY K G IDKA   F  M +R ++SW  MI+G+ ++G  ++ + LF++M+L+G+
Sbjct: 416 GTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGI 475

Query: 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDAL 308
            P++VT   +L AC   G  D+A   F +++++ N+      +  +I  Y + G+ E+A 
Sbjct: 476 KPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAF 535

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSC 333
            + ++M   +  P++   S +++ C
Sbjct: 536 DVVHKM---NFEPNETIWSMLIAGC 557



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 9/205 (4%)

Query: 239 KKCID--LFQEMQLL-------GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289
           ++CID  L  E +++       G + D   ++ ++    + G ++ A ++F  +  ++  
Sbjct: 72  QECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVN 131

Query: 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349
            WTT++ GY QN     AL LF +ML     P  +++  V+++C+ L S+  G+ VH   
Sbjct: 132 AWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYL 191

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
           +   +D D  + ++L   Y K    + A   F ++  ++V+SW S+I+    NGQ   +L
Sbjct: 192 IKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSL 251

Query: 410 ALYDKLLQENLKPDSFTFVSVLSAC 434
           + +  +L + +KP+ +T  SVLSAC
Sbjct: 252 SFFMDMLSDGMKPNEYTLTSVLSAC 276



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 23/208 (11%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
            +++HG  V  G  +DL V + L+++Y KCGV + A  VF+ +P RNV +W +++ GY Q
Sbjct: 83  ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 142

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH-----GI 456
           N   L AL L+ K+L+    P ++T   VL+AC      E G+     +   H      I
Sbjct: 143 NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSI 202

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
             SL  +        R     KA  +IK    + + + W++++S C   G       AAR
Sbjct: 203 GNSLSSFYSKFR---RLEFAIKAFKIIK----EKDVISWTSVISSCCDNGQ------AAR 249

Query: 517 HL-FELEPINAG----PYIMLSNMYAAC 539
            L F ++ ++ G     Y + S + A C
Sbjct: 250 SLSFFMDMLSDGMKPNEYTLTSVLSACC 277



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++   AL+S + + GS+      F +MP R  +S+ + I GFA  G S++ALQ+F  
Sbjct: 410 LADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFED 469

Query: 147 MQKDRFEPTDYTHVSALNACAQ---------LLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           M+    +P   T V  L+AC+            +L + KQ + K V+ +          L
Sbjct: 470 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQ-KQYNIKPVMDHFA-------CL 521

Query: 198 TDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
            DMY + G +++A  +  +MN   N   W+++I+G   +G  K  +  +   QLL L P 
Sbjct: 522 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHG--KSDLGFYAAEQLLKLKPK 579

Query: 257 EV-TVSNILGACFQTGRIDDAGRLFHVIKEK 286
           +V T  ++L      GR  D  ++  ++KE+
Sbjct: 580 DVETYVSLLNMHISAGRWKDVSKVRKLMKEE 610


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 225/695 (32%), Positives = 360/695 (51%), Gaps = 71/695 (10%)

Query: 65  LLHFYAKSGKLFYARDLFDKM----PLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           LLH   ++G L  AR L   M       D+    +L++ + R  S +D R LFD MP ++
Sbjct: 82  LLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKN 141

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
            V++   I G         AL+VF  M +    P+ YT    L+AC+    +  G+Q+HG
Sbjct: 142 VVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHG 201

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG------YLK 234
             +         + N+L  +Y K G+++     F    ++N+++W  MIS       YL 
Sbjct: 202 YSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLD 261

Query: 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--------------------------- 267
            G     + LF +M   G+ P+E T+++++  C                           
Sbjct: 262 LG-----LSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPV 316

Query: 268 --------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ--NGKEED---------AL 308
                    + G  D+A RLF  +     + W  MI GY Q  +  ++D         AL
Sbjct: 317 KNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQAL 376

Query: 309 ILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368
            LF +++  +++PD F+ SS++S C+ + +L  G+ +H   +  G   D++V+SAL++MY
Sbjct: 377 KLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMY 436

Query: 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428
            KCG  + A   F  MPTR  V+W SMI+GY+Q+G+  +A+ L++ ++    +P+  TFV
Sbjct: 437 NKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFV 496

Query: 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH 488
           S+LSAC +A L E  + +FD +   + I P +DHY CM+++  R   +D A   IK    
Sbjct: 497 SLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGF 556

Query: 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +PN  IWS+L++ C   G+++    AA  L EL+P     Y++L NMY + GRW DVA +
Sbjct: 557 EPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARV 616

Query: 549 RSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSP-- 606
           R   K ++V      SWI I +KV+ F ++D THP+   +Y+ L  L++K +  G+ P  
Sbjct: 617 RKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQ 676

Query: 607 NTKLVLHDTQEEEKVKS-------ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDC 659
           N   +L D++E +  K        I +HSE+LA+A  L++ P G T +R+ KNI +C DC
Sbjct: 677 NAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGAT-VRVTKNITMCRDC 735

Query: 660 HLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           H  +K+ S +  R I++RDS R H F  G CSC D
Sbjct: 736 HSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGD 770



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 211/475 (44%), Gaps = 88/475 (18%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           +V  L+ C +   L   + +HG +V      ++FV  +L ++Y +      AR LFD M 
Sbjct: 79  YVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMP 138

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---- 274
           ++N+V+W  +I+G+  N +P   +++F EM  LG  P   T+  +L AC    RID    
Sbjct: 139 DKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQ 198

Query: 275 ------------------------------DAG-RLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                         ++G R F    +K+ + WTTMI    ++  
Sbjct: 199 VHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDEN 258

Query: 304 EED-ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             D  L LF +ML   V P++F+++SV+S C     +  G+ V      +G + +L V +
Sbjct: 259 YLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKN 318

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ-----------NGQDLEALAL 411
           + + +Y + G TD+A  +F  M + ++++WN+MI+GYAQ             +  +AL L
Sbjct: 319 STMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKL 378

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMINLL 470
           +  L++  LKPD FTF S+LS C      E+G Q H ++I    G    +   + ++N+ 
Sbjct: 379 FRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKT--GCLSDVVVNSALVNMY 436

Query: 471 GRSSDVDKAVDLIKSLP----------------------------------HKPNSLIWS 496
            +   ++ A      +P                                   +PN + + 
Sbjct: 437 NKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFV 496

Query: 497 TLLSVCAMKGDIKHGEM---AARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548
           +LLS C+  G ++  E      R+ + +EP+    Y  + +M+   GR +D  S 
Sbjct: 497 SLLSACSYAGLVEEAERYFDMMRNEYHIEPL-VDHYGCMVDMFVRLGRLDDAFSF 550



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 29/321 (9%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G    E   T ++  C    D+ L K++Q+       E N   + N  ++ Y + G+   
Sbjct: 274 GVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLP-VKNSTMYLYLRKGETDE 332

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           A  LF++M    II+WNA++S +A     Q + +  D +  R             ++GF 
Sbjct: 333 AMRLFEEMDSSSIITWNAMISGYA-----QIMDSAKDDLHAR-------------SRGF- 373

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
            +AL++F  + +   +P  +T  S L+ C+ ++ L +G+QIH   +      +V V +AL
Sbjct: 374 -QALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSAL 432

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257
            +MY K G I+ A   F  M  R  V+W  MISGY ++G+ +  I LF++M L G  P+E
Sbjct: 433 VNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNE 492

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFN 312
           +T  ++L AC   G +++A R F +++ + ++      +  M+  + + G+ +DA   F+
Sbjct: 493 ITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDA---FS 549

Query: 313 EMLSEDVRPDKFSISSVVSSC 333
            +      P++   SS+V+ C
Sbjct: 550 FIKRTGFEPNEAIWSSLVAGC 570


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/639 (32%), Positives = 347/639 (54%), Gaps = 72/639 (11%)

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN LLSAH+R+G+                                  AL+VF R      
Sbjct: 76  WNGLLSAHSRAGA-------------------------------PGAALRVF-RALPSSA 103

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
            P   T    L ACA+L DL   + +  +      G +VFV +AL  +Y++ G +++A  
Sbjct: 104 RPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIR 163

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG- 271
           +FD M  ++ V+W+ M++G++  G+P + + ++  M+  G++ DEV +  ++ AC  TG 
Sbjct: 164 VFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGN 223

Query: 272 ----------------------------------RIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                              +D A ++F ++  +++V W+ +I G
Sbjct: 224 ARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISG 283

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           + QNG+  +AL LF E+ ++ ++P  +++ S + +CA +  L  G+ +HG  ++  ++  
Sbjct: 284 FAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHG-FILRRLEWQ 342

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
            ++ +A++DMY KCG  + A  +FN + +R++V WN++I     +G   +ALAL+ +L +
Sbjct: 343 CILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNE 402

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
             +KPD  TF S+LSA  H+ L E G+  FD +    GI P+  HY C+++LL RS  V+
Sbjct: 403 TGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVE 462

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A D++ S+  +P   IW  LLS C     ++ GE  A+ + EL P + G   ++SN+YA
Sbjct: 463 EANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYA 522

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
           A  +W+ V  IR  MK    KK   YS IE+    H FV ED++HP+   I + ++KL  
Sbjct: 523 AAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNS 582

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           ++++ G+ P T+ V HD  E++ +    YHSE+LA+A+ L+    G T + I+KN+RVCG
Sbjct: 583 EMRKLGYVPRTEFVYHDLDEDQLLS---YHSERLAIAFGLLNTSPG-TRLVIIKNLRVCG 638

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCH  +K+ S I+ R I++RD+ RFHHF  G CSC D W
Sbjct: 639 DCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 184/380 (48%), Gaps = 38/380 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +ALL  ++R G++++   +FD MP +D V+++T +AGF   G   EAL ++SRM+
Sbjct: 141 DVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMR 200

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +      +   V  + AC    + R G  +HG+++   +  +V    +L  MYAK G +D
Sbjct: 201 EHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLD 260

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A  +F  M  RN V+W+ +ISG+ +NG+  + +DLF+E+Q  GL P    + + L AC 
Sbjct: 261 VACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACA 320

Query: 269 ----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G ++ A +LF+ +  +D V W  +
Sbjct: 321 SVGFLKLGKSIHGFILRRLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAI 380

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LG 353
           I     +G   DAL LF E+    ++PD  + +S++S+ +    +  G+    + +   G
Sbjct: 381 IACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFG 440

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-WNSMINGYAQNGQDLEALALY 412
           ++        ++D+  + G+ ++A  +   M T   ++ W  +++G   N +      + 
Sbjct: 441 IEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIA 500

Query: 413 DKLLQENLKPDSFTFVSVLS 432
            K+L+  L+P+    ++++S
Sbjct: 501 KKILE--LRPEDIGVLALVS 518



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 114/268 (42%), Gaps = 53/268 (19%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84
           A    +L C  V  ++L K +   + L   E     L   +L  Y+K G L  AR LF+K
Sbjct: 311 ALVSALLACASVGFLKLGKSIHGFI-LRRLEWQC-ILGTAVLDMYSKCGSLESARKLFNK 368

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKM---PIR-DSVSYNTAIAGFANKGFSREA 140
           +  RD++ WNA+++     G   D  ALF ++    I+ D  ++ + ++  ++ G   E 
Sbjct: 369 LSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEG 428

Query: 141 LQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199
              F RM K+   EP +  +V                                    + D
Sbjct: 429 KFWFDRMIKEFGIEPAEKHYV-----------------------------------CIVD 453

Query: 200 MYAKGGEIDKARWLFDRMNNRNLVS-WNLMISGYLKNGQPKKCIDLFQEM--QLLGLNPD 256
           + A+ G +++A  +   M     ++ W +++SG L N    K ++L + +  ++L L P+
Sbjct: 454 LLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNN----KKLELGETIAKKILELRPE 509

Query: 257 EV----TVSNILGACFQTGRIDDAGRLF 280
           ++     VSN+  A  +  ++ +  +L 
Sbjct: 510 DIGVLALVSNLYAAAKKWDKVREIRKLM 537


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/542 (34%), Positives = 303/542 (55%), Gaps = 36/542 (6%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           NV   N L   Y K G+++ AR LFD M  RN+ +WN M++G   +G  ++ +  F  M+
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
             G+ PDE  + ++   C                                    + G + 
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLR 226

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           D       +   + V   T I G TQNG  E AL  F  M    V  +  +  S V+SC+
Sbjct: 227 DGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCS 286

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            LA+L  GQ +H  A+  GVD  + V ++L+ MY +CG   D+  V       ++V  ++
Sbjct: 287 DLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSA 346

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           MI+ Y  +G   +A+ L+ +++    +P+  TF+++L AC H+ L + G N F+ ++  +
Sbjct: 347 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTY 406

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
           G+ PS+ HY C+++LLGRS  +++A DLI S+P +P+ +IW TLLS C  +      E  
Sbjct: 407 GLQPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERI 466

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  + EL+P ++  Y++LSN+ A   RWEDV+ +R +M+ +NV+K    SW+E+  ++H+
Sbjct: 467 AERVIELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQ 526

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           F + D +H     I E L +++ ++++ G++P+  +V HD ++EEK  S+ +HSEKLA+A
Sbjct: 527 FCTGDESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIA 586

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
           +  +  P GV PIR+MKN+RVC DCH+ +K  S +IGR I++RD +RFHHF  G CSC D
Sbjct: 587 FAFLSLPEGV-PIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGD 645

Query: 695 NW 696
            W
Sbjct: 646 YW 647



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 172/375 (45%), Gaps = 37/375 (9%)

Query: 60  FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR 119
           F  N LL  YA  G    AR LF+++P R+++SWN L+  + ++G ++  R LFD+MP R
Sbjct: 78  FTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPAR 137

Query: 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179
           +  ++N  +AG  N G + E+L  F  M+++  +P +Y   S    CA L D+  G+Q+H
Sbjct: 138 NVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVH 197

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             +V   L  ++ V ++L  MY + G +         + + N+VS N  ISG  +NG  +
Sbjct: 198 AYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAE 257

Query: 240 KCIDLFQEMQLLGLNPDEVTVSNILGAC-------------------------------- 267
             ++ F  M+  G+  + VT  + + +C                                
Sbjct: 258 GALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLV 317

Query: 268 ---FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF 324
               + G + D+ R+       D V  + MI  Y  +G  + A+ LF +M++    P++ 
Sbjct: 318 HMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEV 377

Query: 325 SISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           +  +++ +C+       G           G+   +   + ++D+  + G  ++A  +   
Sbjct: 378 TFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILS 437

Query: 384 MPTR-NVVSWNSMIN 397
           MP + + V W ++++
Sbjct: 438 MPVQPDGVIWKTLLS 452



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I+     G+ ++AL   +    E +  +    S +  +C  L  L     +H  A   G 
Sbjct: 20  IIRLCSTGRVKEAL---HRRFREGLWSEPGLFSHIFRACQALPLLRQ---LHAFAATSGA 73

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             D   ++ L+  Y   G    A  +F  +P RNV+SWN +I GY +NG    A  L+D+
Sbjct: 74  AADRFTANHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDE 133

Query: 415 LLQENL 420
           +   N+
Sbjct: 134 MPARNV 139


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/696 (29%), Positives = 372/696 (53%), Gaps = 69/696 (9%)

Query: 38  DVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL 96
           ++++ K + SH+ +       + +  N L++FYAK  ++  A +LFD+MP R+++SW+AL
Sbjct: 44  NLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPERNVVSWSAL 103

Query: 97  LSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPT 155
           ++                               G+   GFS + +++   M  +    P 
Sbjct: 104 MT-------------------------------GYLLNGFSLKVIRLLKDMISEGNVSPN 132

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215
           +Y    A+++C     +  G+Q HG ++      + +VRNAL  MY+K   +  A  +++
Sbjct: 133 EYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWN 192

Query: 216 RMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF------- 268
            +   ++V++N ++S  ++NG  ++ +++ + M    +  D+VT  N    C        
Sbjct: 193 EVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRL 252

Query: 269 ----------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ 300
                                       + G+   A  +F  ++ ++ V WT ++    Q
Sbjct: 253 GLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQ 312

Query: 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360
           NG  E+AL LF++M  E+V+ ++F+ + ++++CA L++  +G ++HG +   G    ++V
Sbjct: 313 NGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMV 372

Query: 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420
            +ALI+MY K G  + A  VF+ M  R++++WN+MI G++ +G   +AL ++  +L    
Sbjct: 373 GNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEE 432

Query: 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480
            P+  TF  VLSAC H  L + G  +   +    G+ P L+HY C+++LL ++  +++A 
Sbjct: 433 HPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEAR 492

Query: 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540
           + +++ P K + + W TLL+ C +  +   G   A  + E++P + G Y +LSN+YA   
Sbjct: 493 NFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEK 552

Query: 541 RWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600
           RW+ V  +R  M+ K +KK    SWIEI N  H F SED  HP+    Y+++ +L+  ++
Sbjct: 553 RWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIK 612

Query: 601 EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCH 660
             G++P+   VLHD ++E+K   + YHSEKLA+AY L+K P   + I ++KN+R+C DCH
Sbjct: 613 PLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEAS-ILVIKNLRICDDCH 671

Query: 661 LFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             ++  S +  R I++RD+NRFHHF  G CSC D W
Sbjct: 672 SAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 203/427 (47%), Gaps = 58/427 (13%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLG--GNVFVRNALTDMYAKGGEIDKARWLFDRM 217
           +  L   A   +L+ GK IH  ++V +     ++   N+L + YAK  ++  A  LFDRM
Sbjct: 33  IKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRM 92

Query: 218 NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRID-- 274
             RN+VSW+ +++GYL NG   K I L ++M   G ++P+E  ++  + +C   GR++  
Sbjct: 93  PERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEG 152

Query: 275 ---------------------------------DAGRLFHVIKEKDNVCWTTMIVGYTQN 301
                                            DA  +++ +   D V + +++    +N
Sbjct: 153 RQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVEN 212

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361
           G   + L +   M+SE V+ DK +  +  S CA L  L  G  VHGK +   V+ D  VS
Sbjct: 213 GYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVS 272

Query: 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421
           SA+I+MY KCG +  A  VF+ + +RNVV W +++    QNG   EAL L+ K+ QEN+K
Sbjct: 273 SAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVK 332

Query: 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA----CMINLLGRSSDVD 477
            + FT+  +L+AC  A L  R      S+   H       H+      +IN+  +S D++
Sbjct: 333 SNEFTYAVLLNAC--AGLSARRNG---SLLHGHSEKSGFKHHVMVGNALINMYAKSGDIE 387

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP----YIMLS 533
            A  +   + H+ + + W+      AM     H  +  + L   + + A      Y+  +
Sbjct: 388 AAKKVFSDMMHR-DIITWN------AMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFT 440

Query: 534 NMYAACG 540
            + +ACG
Sbjct: 441 GVLSACG 447



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 150/306 (49%), Gaps = 40/306 (13%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C  + D+ L   +   M  +  E +  ++ + +++ Y K GK   AR +FD +  R+++ 
Sbjct: 244 CASLKDLRLGLHVHGKMLTSDVECDA-YVSSAIINMYGKCGKSLMARGVFDGLQSRNVVL 302

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           W A++++  ++G  +                               EAL +FS+M+++  
Sbjct: 303 WTAVMASCFQNGCFE-------------------------------EALNLFSKMEQENV 331

Query: 153 EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212
           +  ++T+   LNACA L   R G  +HG         +V V NAL +MYAK G+I+ A+ 
Sbjct: 332 KSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKK 391

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272
           +F  M +R++++WN MI G+  +G  KK + +FQ+M     +P+ VT + +L AC   G 
Sbjct: 392 VFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGL 451

Query: 273 IDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327
           + +     H + ++  V      +T ++   ++ G+  +A    N M +  V+ D  +  
Sbjct: 452 VQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEAR---NFMRTAPVKWDVVAWR 508

Query: 328 SVVSSC 333
           +++++C
Sbjct: 509 TLLNAC 514



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 33/192 (17%)

Query: 21  ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARD 80
           + E  Y  L+  C  ++       L  H + + ++ +   + N L++ YAKSG +  A+ 
Sbjct: 333 SNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFK-HHVMVGNALINMYAKSGDIEAAKK 391

Query: 81  LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
           +F  M  RDII+WNA+                               I GF++ G  ++A
Sbjct: 392 VFSDMMHRDIITWNAM-------------------------------ICGFSHHGLGKKA 420

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRG-KQIHGKIVVGNLGGNVFVRNALTD 199
           L VF  M      P   T    L+AC  L  ++ G   +H  +    +   +     +  
Sbjct: 421 LLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVS 480

Query: 200 MYAKGGEIDKAR 211
           + +K G++++AR
Sbjct: 481 LLSKTGQLNEAR 492


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 331/613 (53%), Gaps = 46/613 (7%)

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           N  I     +G  ++AL + S        PT  T    + + A+   L     +H  +V 
Sbjct: 42  NHLIQSLCKQGNLKQALYLLSHESN----PTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
           G    + F+   L +M+++   +D AR +FD+   R +  WN +       G+    ++L
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 245 FQEMQLLGLNPDEVTVSNILGAC---------FQTGR----------------------- 272
           +  M ++G++ D  T + +L AC          Q G+                       
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMD 217

Query: 273 -------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML--SEDVRPDK 323
                  +  A  +F  +  K+ V W+ MI  Y +NGK  +AL LF EM+  + D  P+ 
Sbjct: 218 MYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
            ++ SV+ +CA  A+L  G+++H   +  G+D  L V SALI MY +CG  +    +F+ 
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDR 337

Query: 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443
           M  ++VV WNS+I+ Y  +G   +A+ ++++++     P   +F+SVL AC H  L E G
Sbjct: 338 MHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEG 397

Query: 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA 503
           +  F+S+   HGI PS++HYACM++LLGR++ +D+A  +I+ L  +P   +W +LL  C 
Sbjct: 398 KKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACR 457

Query: 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAY 563
           +   ++  E A++ LF+LEP NAG Y++L+++YA    W++V  ++  + S+ ++K    
Sbjct: 458 IHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGR 517

Query: 564 SWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKS 623
           SWIE+  K++ F S D  +P+ E ++  L  L  ++++ G++P TKLVL+D  +EEK + 
Sbjct: 518 SWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERI 577

Query: 624 ICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFH 683
           +  HSEKLA+A+ LI    G T IRI KN+R+C DCH   KF S    R I++RD NRFH
Sbjct: 578 VLGHSEKLAVAFGLINTSKGDT-IRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFH 636

Query: 684 HFVGGNCSCKDNW 696
           HF  G CSC D W
Sbjct: 637 HFKDGVCSCGDYW 649



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 188/440 (42%), Gaps = 86/440 (19%)

Query: 7   LRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSH---MDLNFYEPNTTFLHN 63
           L+QA+  L S     T++    L+L   R N   L+  L  H   +D  F +    FL  
Sbjct: 54  LKQAL-YLLSHESNPTQQTCELLILSAARRNS--LSDALDVHQLLVDGGFDQ--DPFLAT 108

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
           +L++ +++   +  AR +FDK   R I  WNAL  A A +G   D+  L+ +M +    S
Sbjct: 109 KLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSS 168

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ----LLDLRRGKQIH 179
                                     DRF     T+   L AC      +  L++GK+IH
Sbjct: 169 --------------------------DRF-----TYTYLLKACVASECLVSFLQKGKEIH 197

Query: 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPK 239
             I+    G +V V   L DMYA+ G +  A  +FD M  +N+VSW+ MI+ Y KNG+P 
Sbjct: 198 AHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPY 257

Query: 240 KCIDLFQEMQLLGLN--PDEVTVSNILGAC------------------------------ 267
           + ++LF+EM L   +  P+ VT+ ++L AC                              
Sbjct: 258 EALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISA 317

Query: 268 -----FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                 + G+++    +F  + +KD V W ++I  Y  +G    A+ +F EM+     P 
Sbjct: 318 LITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPS 377

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVL-GVDDDLLVSSALIDMYCKCGVTDDAWTV- 380
             S  SV+ +C+    +  G+ +    V   G+   +   + ++D+  +    D+A  + 
Sbjct: 378 HISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKII 437

Query: 381 --FNMMPTRNVVSWNSMING 398
               + P   V  W S++  
Sbjct: 438 EDLRIEPGPKV--WGSLLGA 455


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 342/644 (53%), Gaps = 39/644 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           ++ + N+LL+ +A+ G V D   +FD MP+RD V++N+ + G+ + G    AL  F  M 
Sbjct: 142 EVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMH 201

Query: 149 KD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +  + +      ++AL AC     L +G+++H  ++   L  +V V  +L DMY K G I
Sbjct: 202 EGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAI 261

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A  +F  M +R +V+WN MI GY  NG P++  D F +M+  G   + VT  N+L AC
Sbjct: 262 ASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAAC 321

Query: 268 FQT-----------------------------------GRIDDAGRLFHVIKEKDNVCWT 292
            QT                                   G++  +  +F  +  K  V W 
Sbjct: 322 AQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWN 381

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL 352
            MI  Y       +A+ LF E+L++ + PD F++S+VV +   L  L   + +H   V L
Sbjct: 382 NMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRL 441

Query: 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412
              ++ LV++A++ MY +CG    +  +F+ M  ++V+SWN++I GYA +GQ   AL ++
Sbjct: 442 DYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMF 501

Query: 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
            ++    L+P+  TFVSVL+AC  + + + G   F+ +   +GI P ++HY CM +LLGR
Sbjct: 502 SEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGR 561

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
           + D+ + +  I+S+P  P   IW +LL+    + DI   E AA  +FELE  N G Y++L
Sbjct: 562 AGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVIL 621

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           S+MYA  GRWEDV  IRSSM  K +++  A S +E+      FV+ D THP+++ I+E  
Sbjct: 622 SSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVS 681

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             L +K+ E  +  N    +  T     + +   HS +LA+ + LI       PI + KN
Sbjct: 682 DVLSRKIGETDYPRNLSDPISLTSRRTIIPN--KHSVRLAVVFGLISS-EARAPILVKKN 738

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +R+C  CH  +K  S    R I++ D+N +H F+ G+C C D W
Sbjct: 739 VRICNHCHHALKLISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 125/455 (27%), Positives = 205/455 (45%), Gaps = 41/455 (9%)

Query: 92  SWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151
           S  +L+ +HA +G + D  A     P  D+  +N  I GFA+ G    AL  +  M    
Sbjct: 45  SLKSLVLSHAAAGRMHDALAAVRSSP--DAFLHNVVIRGFADAGLPEAALAAYRAMLAAG 102

Query: 152 FEPTDYTHVSALNACAQLLDLRRGKQIH-GKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
             P  +T    +  CA+L  L  G+  H   I +G +G  V+  N+L   YAK G +  A
Sbjct: 103 ARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADA 162

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM-QLLGLNPDEVTVSNILGAC-- 267
             +FD M  R++V+WN M+ GY+ NG     +D F+EM + L +  D V +   L AC  
Sbjct: 163 ERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCL 222

Query: 268 ---------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTM 294
                                             + G I  A  +F  +  +  V W  M
Sbjct: 223 DSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCM 282

Query: 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
           I GY  NG  E+A   F +M +E  + +  +  +++++CA+  S  +G+ VHG       
Sbjct: 283 IGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQF 342

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
              +++ +AL++MY K G    + T+F  M  + +VSWN+MI  Y       EA+ L+ +
Sbjct: 343 LPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLE 402

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           LL + L PD FT  +V+ A +   L  + +     I  +     +L   A M ++  R  
Sbjct: 403 LLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVM-HMYARCG 461

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIK 509
           DV  +  +   +  K + + W+T++   A+ G  K
Sbjct: 462 DVVSSRKIFDKMAGK-DVISWNTIIMGYAIHGQGK 495



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 35/282 (12%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+    +LL  + + G++     +F  MP R  V++N  I G+A  G   EA   F +M
Sbjct: 243 QDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQM 302

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           + +  +    T ++ L ACAQ      G+ +HG +       +V +  AL +MY+K G++
Sbjct: 303 KAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKV 362

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA- 266
             +  +F +M N+ LVSWN MI+ Y+      + I LF E+    L PD  T+S ++ A 
Sbjct: 363 KSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAF 422

Query: 267 --------CFQ--------------------------TGRIDDAGRLFHVIKEKDNVCWT 292
                   C Q                           G +  + ++F  +  KD + W 
Sbjct: 423 VLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWN 482

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           T+I+GY  +G+ + AL +F+EM S  ++P++ +  SV+++C+
Sbjct: 483 TIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACS 524



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 116/217 (53%), Gaps = 4/217 (1%)

Query: 68  FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTA 127
            Y +S   +  R  F    L  ++   ALL  +++ G V+    +F +M  +  VS+N  
Sbjct: 328 LYGRSVHGYVTRSQF----LPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNM 383

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL 187
           IA +  K    EA+ +F  +      P  +T  + + A   L  LR+ +Q+H  IV  + 
Sbjct: 384 IAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDY 443

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
           G N  V NA+  MYA+ G++  +R +FD+M  ++++SWN +I GY  +GQ K  +++F E
Sbjct: 444 GENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSE 503

Query: 248 MQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           M+  GL P+E T  ++L AC  +G  D+    F++++
Sbjct: 504 MKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQ 540



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 31/109 (28%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           T + N ++H YA+ G +  +R +FDKM  +D+ISW                         
Sbjct: 447 TLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISW------------------------- 481

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA 167
                 NT I G+A  G  + AL++FS M+ +  +P + T VS L AC+
Sbjct: 482 ------NTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACS 524


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/687 (33%), Positives = 362/687 (52%), Gaps = 84/687 (12%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHM---DLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLF 82
           +  L+  C R + +   K+L + +    L    PNT FL N L H YA  G    AR LF
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNT-FLLNALHHLYASCGVTSSARHLF 76

Query: 83  DKMPL--RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140
            ++P   +D+  W  LL++  + G+                                 E 
Sbjct: 77  YQIPRSHKDVTDWTTLLTSLVQHGTKPS------------------------------EG 106

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
              F  M+K+     D   +S    C ++ DL  G+Q  G +V   LG  V V NA+ +M
Sbjct: 107 FFFFKEMRKEGVVLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNM 166

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G +++ R +F  MN RN+VSW+ ++ G +K                          
Sbjct: 167 YVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVK-------------------------- 200

Query: 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM-LSEDV 319
                   + GR+     +F  + E++ V WT MI GY  NG   +  +L +EM L   +
Sbjct: 201 ----WEGVENGRV-----VFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRL 251

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAW 378
             +  ++SS++S+CA+   +  G+ VH  A+  +G +  ++V +AL+DMY KCG  D A+
Sbjct: 252 GLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAF 311

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438
            VF  +P RNVV+WN+M+ G A +G+    L ++ K+++E  KPD  TF++VLSAC H+ 
Sbjct: 312 KVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEA-KPDDLTFMAVLSACSHSG 370

Query: 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498
           L ++G ++F S+ + +G TP ++HYACM+++LGR+  +++AV LIK +P  PN ++  +L
Sbjct: 371 LVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSL 430

Query: 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558
           L  C   G ++ GE   + L +++  N   +++LSNMY   G+ +   S+R  +KSK ++
Sbjct: 431 LGSCNAHGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIR 490

Query: 559 KFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTK---LVLHDT 615
           K    S I +   +H+F + D++HP T+ IY  L+ +I++L+ AG+ PNT        D 
Sbjct: 491 KVPGVSSIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDG 550

Query: 616 QE------EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDI 669
           +E      EEK +++  HSEKLA+ +  I    G  P+ I KN+R+C DCH  +K  S I
Sbjct: 551 REGSSEEMEEKEQALFLHSEKLAVCFGHISTKPG-APLYIFKNLRICQDCHSAIKIVSKI 609

Query: 670 IGRTIILRDSNRFHHFVGGNCSCKDNW 696
             R I++RD NRFH F  G+CSC D W
Sbjct: 610 YNREIVIRDRNRFHCFKHGSCSCSDYW 636



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 166/332 (50%), Gaps = 20/332 (6%)

Query: 25  AYTQLVLDCTRVNDVELAKRLQS---HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDL 81
           A   + + CTRV D+ + ++ Q     M L         + N +++ Y K G +   R +
Sbjct: 124 AMISVFVLCTRVEDLGMGRQAQGCLVKMGLGL----GVKVCNAIMNMYVKCGLVEEVRRV 179

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREAL 141
           F +M  R+++SW+ LL    +   V++ R +FD+MP R+ V +   IAG+   GFSRE  
Sbjct: 180 FCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGF 239

Query: 142 QVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGG--NVFVRNALT 198
            +   M  + R      T  S L+ACAQ  D+  G+ +H   + G +G   ++ V  AL 
Sbjct: 240 LLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKG-MGREMHIMVGTALV 298

Query: 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258
           DMYAK G ID A  +F  +  RN+V+WN M+ G   +G+ K  +D+F +M +    PD++
Sbjct: 299 DMYAKCGPIDMAFKVFKYLPKRNVVAWNAMLGGLAMHGRGKFVLDIFPKM-IEEAKPDDL 357

Query: 259 TVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNE 313
           T   +L AC  +G +D     F  ++ +         +  M+    + G  E+A++L  +
Sbjct: 358 TFMAVLSACSHSGLVDQGYHYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKK 417

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVV 345
           M    + P++  + S++ SC     L  G+ +
Sbjct: 418 M---PMCPNEVVLGSLLGSCNAHGKLQLGERI 446


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/600 (35%), Positives = 337/600 (56%), Gaps = 43/600 (7%)

Query: 137 SREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNA 196
           S   L V   +     EP    +   L  C  L  L++GK +H  ++      ++ ++N+
Sbjct: 72  STTGLHVLDLINNGSLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNS 131

Query: 197 LTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG---QPKKCIDLFQEMQLLGL 253
           +  MYAK G ++ AR +FD M  +++V+W  MI+GY ++G        + LF EM   GL
Sbjct: 132 ILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGL 191

Query: 254 NPDEVTVSNI------LGAC--------------FQ---------------TGRIDDAGR 278
            P+E  +S++      LG+C              FQ                G + ++  
Sbjct: 192 RPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRL 251

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  ++ K+ V W  +I G+ + G+ E+AL LF +M  E     +F+ S+++ S +   S
Sbjct: 252 VFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGS 311

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +H   +  G      V + L+ MY K G   DA  VF+ +   +VVS NSM+ G
Sbjct: 312 LEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIG 371

Query: 399 YAQNGQDLEALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457
           YAQ+G   EA+ L++++ L   ++P+  TF+SVL+AC HA L + G  +F+ +   +G+ 
Sbjct: 372 YAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLE 430

Query: 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517
           P L HY  +++L GR+  +D+A   I+ +P +PN+ IW  LL    M  + + G  AA+ 
Sbjct: 431 PKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQK 490

Query: 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577
           + EL+P   G + +LSN+YA+ G+W+DVA +R  MK   +KK  A SW+EI+N VH F +
Sbjct: 491 VLELDPFYPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSA 550

Query: 578 EDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCL 637
            D +HP+   +YE    L +K++E G+ P+T  V     ++EK  ++ YHSEKLALA+ L
Sbjct: 551 NDISHPQKNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFAL 610

Query: 638 IK-KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           +  KP  V  IRIMKNIRVCGDCH  +K+ S ++ R II+RD+NRFHHF  G+CSC+D W
Sbjct: 611 LNTKPGSV--IRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 203/424 (47%), Gaps = 46/424 (10%)

Query: 55  EPNTTFLHNRLLHFYAKSGKLFYAR----DLFDKMPLRDIISWNALLSAHARSGSVQDLR 110
           EP+ T ++N+LL      GKL   +     L +     D++  N++L  +A+ GS++  R
Sbjct: 88  EPDRT-IYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 111 ALFDKMPIRDSVSYNTAIAGFANKGFSREA---LQVFSRMQKDRFEPTDYTHVSALNACA 167
            +FD+M ++D V++ + I G++  G++  A   L +F  M +D   P ++   S +  C 
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNL 227
            L     GKQIHG         NVFV ++L DMYA+ GE+ ++R +FD + ++N VSWN 
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID------------- 274
           +ISG+ + G+ ++ + LF +MQ  G    E T S +L +   TG ++             
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326

Query: 275 ----------------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
                                 DA ++F  + + D V   +M++GY Q+G  ++A+ LF 
Sbjct: 327 KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFE 386

Query: 313 E-MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           E ML  ++ P+  +  SV+++C+    L  G          G++  L   + ++D++ + 
Sbjct: 387 EMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRA 446

Query: 372 GVTDDAWTVFNMMPTR-NVVSWNSMINGYA-QNGQDLEALALYDKLLQENLKPDSFTFVS 429
           G+ D A +    MP   N   W +++         ++ A A    L  +   P + T +S
Sbjct: 447 GLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLS 506

Query: 430 VLSA 433
            + A
Sbjct: 507 NIYA 510



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 17  RGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLF 76
            G  ATE  Y+ L+   +    +E  K L +HM +   +    ++ N LLH YAKSG + 
Sbjct: 290 EGFGATEFTYSALLCSSSTTGSLEQGKWLHAHM-MKSGKKLVGYVGNTLLHMYAKSGNIC 348

Query: 77  YARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI-----RDSVSYNTAIAGF 131
            A+ +FD++   D++S N++L  +A+ G  ++   LF++M +      + +++ + +   
Sbjct: 349 DAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTAC 408

Query: 132 ANKGFSREALQVFSRMQKDRFEP--TDYTHVSALNACAQLLD 171
           ++ G   E L  F  M+K   EP  + YT V  L   A LLD
Sbjct: 409 SHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLD 450


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/764 (30%), Positives = 381/764 (49%), Gaps = 109/764 (14%)

Query: 8   RQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQS-HMDLNFYEPNTTFLHN 63
           RQA++  +   S G    E ++  ++  C R+ D+EL  +L +  + + F   N TF+ N
Sbjct: 153 RQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFL--NYTFVSN 210

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L+  Y K                                G +  +  LFD+MP RD  S
Sbjct: 211 ALMGLYGKC-------------------------------GYLDSVLQLFDEMPHRDIAS 239

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +NT I+    +     A ++F  M++      D+  +S +   A+ L    G++IH  ++
Sbjct: 240 WNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMVGREIHAHVI 299

Query: 184 VGNLGGNVFVRNALTDMYAKGGEI-------------------------------DKARW 212
                 N+ V NAL   Y K G I                               D A  
Sbjct: 300 KIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALE 359

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +FD+M  RN +S+N ++SG+ +NG+  K +  F  M   G+   + T++ +L AC     
Sbjct: 360 VFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLME 419

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDN--VCWTTMI 295
                                          + GR+ DA ++F       +  + WT+MI
Sbjct: 420 AKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMI 479

Query: 296 VGYTQNGKEEDALILF-NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
            GY +N + E+A+ LF    L   +  DK + ++V+  C  LA    G+ +H  A+  G 
Sbjct: 480 CGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGF 539

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             DL V +++I MY KC   DDA  VFN+MP  ++VSWN +I G+  + Q  EAL+++ K
Sbjct: 540 LSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSK 599

Query: 415 LLQENLKPDSFTFVSVLSACLH--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           + +  +KPD+ TFV ++SA  H  ++L +  +  F S+  ++ I P+++HY  ++ +LG 
Sbjct: 600 MEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGY 659

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
              +++A ++I  +P +P + +W  LL  C +  +   G+ AA+HL  ++P++   YI++
Sbjct: 660 WGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILV 719

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+Y+A GRW     +R  M+ K  +K    SWI  +NKVH F + D++HP+ + I+  L
Sbjct: 720 SNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 779

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             LI +  +AG+ P+T  VLH+ +E +K   + YHS K+A  Y L+    G  PIRI+KN
Sbjct: 780 ELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPG-RPIRIVKN 838

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I +CGDCH F+K+ S + GR I LRD++  H F+ G CSCKD W
Sbjct: 839 ILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 882



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 203/469 (43%), Gaps = 72/469 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   NAL+ A+ + G V +   +F  +   + VSY   I+GFA     R+A+++F RM+
Sbjct: 104 DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMR 163

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               E  +++ V+ L  C +LLDL  G Q+H  ++        FV NAL  +Y K G +D
Sbjct: 164 SSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLD 223

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC 267
               LFD M +R++ SWN +IS  +K    ++  +LF++M+ + G   D  T+S IL A 
Sbjct: 224 SVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA 283

Query: 268 --------------------------------FQT--GRIDDAGRLFHVIKEKDNVCWTT 293
                                           F T  G I     LF  ++ +D + WT 
Sbjct: 284 RGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTE 343

Query: 294 MIV-------------------------------GYTQNGKEEDALILFNEMLSEDVRPD 322
           MI                                G+ QNG+   AL  F  M+ E V   
Sbjct: 344 MITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELT 403

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV-- 380
            F+++ V+++C  L      + +HG  +  G   +  + +AL+DM  +CG   DA  +  
Sbjct: 404 DFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFS 463

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALY-DKLLQENLKPDSFTFVSVLSACLHADL 439
                    + W SMI GYA+N Q  EA++L+    L+  +  D     +VL  C     
Sbjct: 464 QGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAF 523

Query: 440 FERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            E G Q H  ++ +  G    L     +I +  + S++D A+ +   +P
Sbjct: 524 HEMGKQIHCHALKS--GFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMP 570



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 70/343 (20%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           H   L+   +  D+   K +H  I    L  ++ + NAL   Y K G +  A  +F  ++
Sbjct: 75  HYYLLDLSVRYDDVELIKAVHASIF--KLAEDIHLANALIVAYLKLGMVPNAYKVFVGLS 132

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------- 268
             N+VS+  MISG+ K+ + ++ +++F  M+  G+  +E +   IL  C           
Sbjct: 133 CPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 192

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G +D   +LF  +  +D   W T+I    +   
Sbjct: 193 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 252

Query: 304 EEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
            E A  LF +M   D  R D F++S+++ +   LAS+  G+ +H   + +G + ++ V +
Sbjct: 253 YERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVIN 311

Query: 363 ALIDMYCKC-------------------------------GVTDDAWTVFNMMPTRNVVS 391
           ALI  Y KC                               G+TD A  VF+ MP RN +S
Sbjct: 312 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSIS 371

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           +N++++G+ QNG+  +ALA + ++++E ++   FT   VL+AC
Sbjct: 372 YNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNAC 414



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 85/153 (55%), Gaps = 4/153 (2%)

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           A +  + +D+ +++ALI  Y K G+  +A+ VF  +   NVVS+ +MI+G+A++ ++ +A
Sbjct: 96  ASIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQA 155

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISAVHGITPSLDHYACMI 467
           + ++ ++    ++ + F+FV++L+ C+     E G Q H  +I    G          ++
Sbjct: 156 MEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLH--AIVIKMGFLNYTFVSNALM 213

Query: 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
            L G+   +D  + L   +PH+ +   W+T++S
Sbjct: 214 GLYGKCGYLDSVLQLFDEMPHR-DIASWNTVIS 245


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 233/764 (30%), Positives = 381/764 (49%), Gaps = 109/764 (14%)

Query: 8   RQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQS-HMDLNFYEPNTTFLHN 63
           RQA++  +   S G    E ++  ++  C R+ D+EL  +L +  + + F   N TF+ N
Sbjct: 171 RQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFL--NYTFVSN 228

Query: 64  RLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVS 123
            L+  Y K                                G +  +  LFD+MP RD  S
Sbjct: 229 ALMGLYGKC-------------------------------GYLDSVLQLFDEMPHRDIAS 257

Query: 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183
           +NT I+    +     A ++F  M++      D+  +S +   A+ L    G++IH  ++
Sbjct: 258 WNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMVGREIHAHVI 317

Query: 184 VGNLGGNVFVRNALTDMYAKGGEI-------------------------------DKARW 212
                 N+ V NAL   Y K G I                               D A  
Sbjct: 318 KIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALE 377

Query: 213 LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC----- 267
           +FD+M  RN +S+N ++SG+ +NG+  K +  F  M   G+   + T++ +L AC     
Sbjct: 378 VFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLME 437

Query: 268 ------------------------------FQTGRIDDAGRLFHVIKEKDN--VCWTTMI 295
                                          + GR+ DA ++F       +  + WT+MI
Sbjct: 438 AKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMI 497

Query: 296 VGYTQNGKEEDALILF-NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354
            GY +N + E+A+ LF    L   +  DK + ++V+  C  LA    G+ +H  A+  G 
Sbjct: 498 CGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGF 557

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
             DL V +++I MY KC   DDA  VFN+MP  ++VSWN +I G+  + Q  EAL+++ K
Sbjct: 558 LSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSK 617

Query: 415 LLQENLKPDSFTFVSVLSACLH--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472
           + +  +KPD+ TFV ++SA  H  ++L +  +  F S+  ++ I P+++HY  ++ +LG 
Sbjct: 618 MEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGY 677

Query: 473 SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532
              +++A ++I  +P +P + +W  LL  C +  +   G+ AA+HL  ++P++   YI++
Sbjct: 678 WGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILV 737

Query: 533 SNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEEL 592
           SN+Y+A GRW     +R  M+ K  +K    SWI  +NKVH F + D++HP+ + I+  L
Sbjct: 738 SNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGL 797

Query: 593 SKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652
             LI +  +AG+ P+T  VLH+ +E +K   + YHS K+A  Y L+    G  PIRI+KN
Sbjct: 798 ELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPG-RPIRIVKN 856

Query: 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           I +CGDCH F+K+ S + GR I LRD++  H F+ G CSCKD W
Sbjct: 857 ILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 900



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 126/469 (26%), Positives = 203/469 (43%), Gaps = 72/469 (15%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           DI   NAL+ A+ + G V +   +F  +   + VSY   I+GFA     R+A+++F RM+
Sbjct: 122 DIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMR 181

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               E  +++ V+ L  C +LLDL  G Q+H  ++        FV NAL  +Y K G +D
Sbjct: 182 SSGIELNEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLD 241

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVTVSNILGAC 267
               LFD M +R++ SWN +IS  +K    ++  +LF++M+ + G   D  T+S IL A 
Sbjct: 242 SVLQLFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAA 301

Query: 268 --------------------------------FQT--GRIDDAGRLFHVIKEKDNVCWTT 293
                                           F T  G I     LF  ++ +D + WT 
Sbjct: 302 RGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDVITWTE 361

Query: 294 MIV-------------------------------GYTQNGKEEDALILFNEMLSEDVRPD 322
           MI                                G+ QNG+   AL  F  M+ E V   
Sbjct: 362 MITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEEGVELT 421

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV-- 380
            F+++ V+++C  L      + +HG  +  G   +  + +AL+DM  +CG   DA  +  
Sbjct: 422 DFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMADAQKMFS 481

Query: 381 FNMMPTRNVVSWNSMINGYAQNGQDLEALALY-DKLLQENLKPDSFTFVSVLSACLHADL 439
                    + W SMI GYA+N Q  EA++L+    L+  +  D     +VL  C     
Sbjct: 482 QGSFSQSGSIIWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAF 541

Query: 440 FERG-QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
            E G Q H  ++ +  G    L     +I +  + S++D A+ +   +P
Sbjct: 542 HEMGKQIHCHALKS--GFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMP 588



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 70/343 (20%)

Query: 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218
           H   L+   +  D+   K +H  I    L  ++ + NAL   Y K G +  A  +F  ++
Sbjct: 93  HYYLLDLSVRYDDVELIKAVHASIF--KLAEDIHLANALIVAYLKLGMVPNAYKVFVGLS 150

Query: 219 NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF---------- 268
             N+VS+  MISG+ K+ + ++ +++F  M+  G+  +E +   IL  C           
Sbjct: 151 CPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQ 210

Query: 269 -------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGK 303
                                    + G +D   +LF  +  +D   W T+I    +   
Sbjct: 211 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 270

Query: 304 EEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
            E A  LF +M   D  R D F++S+++ +   LAS+  G+ +H   + +G + ++ V +
Sbjct: 271 YERAFELFRDMRRIDGFRIDHFTLSTILVAARGLASMV-GREIHAHVIKIGFESNISVIN 329

Query: 363 ALIDMYCKC-------------------------------GVTDDAWTVFNMMPTRNVVS 391
           ALI  Y KC                               G+TD A  VF+ MP RN +S
Sbjct: 330 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSIS 389

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           +N++++G+ QNG+  +ALA + ++++E ++   FT   VL+AC
Sbjct: 390 YNAILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNAC 432



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 83/152 (54%), Gaps = 2/152 (1%)

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408
           A +  + +D+ +++ALI  Y K G+  +A+ VF  +   NVVS+ +MI+G+A++ ++ +A
Sbjct: 114 ASIFKLAEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQA 173

Query: 409 LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468
           + ++ ++    ++ + F+FV++L+ C+     E G     +I    G          ++ 
Sbjct: 174 MEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELG-CQLHAIVIKMGFLNYTFVSNALMG 232

Query: 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLS 500
           L G+   +D  + L   +PH+ +   W+T++S
Sbjct: 233 LYGKCGYLDSVLQLFDEMPHR-DIASWNTVIS 263


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 357/653 (54%), Gaps = 49/653 (7%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
            D+     L++ +++ G ++    +FD +P R+  ++ T + G+        ALQ+F +M
Sbjct: 91  EDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKM 150

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +    P++YT    LNAC+ L  +  GKQ+H  ++  ++  +  + N+L+  Y+K   +
Sbjct: 151 LEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRL 210

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A   F  +  ++++SW  +IS    NGQ  + +  F +M   G+ P+E T++++L AC
Sbjct: 211 EFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSAC 270

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G + +A +LF  ++  + V W 
Sbjct: 271 CVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWN 330

Query: 293 TMIVGYTQ--NGKEED---------ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341
            MI G+ +  +  E+D         AL +F ++    ++PD F+ SSV+S C+ L +L  
Sbjct: 331 AMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQ 390

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ +HG+ +  GV  D++V +AL+ MY KCG  D A   F  MP+R ++SW SMI G+A+
Sbjct: 391 GEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFAR 450

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461
           +G   +AL L++ +    +KP+  TFV VLSAC HA L +    +F+ +   + I P +D
Sbjct: 451 HGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMD 510

Query: 462 HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
           H+AC+I++  R   V++A D++  +  +PN  IWS L++ C   G    G  AA  L +L
Sbjct: 511 HFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHGKSDLGFYAAEQLLKL 570

Query: 522 EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRT 581
           +P +   Y+ L NM+ + GRW+DV+ +R  MK + V K   +SWI I  KV+ F   D++
Sbjct: 571 KPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSWISIKEKVYSFKPNDKS 630

Query: 582 HPETEIIYEELSKLIKKLQEAGFSP--NTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
           H ++  +Y+ L  ++ +++  G+ P  + +++  +  EE  + S   HSEKLA+A+ L+ 
Sbjct: 631 HCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSSTVLHSEKLAIAFGLLN 690

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
            P   TPIR++K+I +C DCH F++F S + GR I++RDS + H F+ G CSC
Sbjct: 691 LPTA-TPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHKFLNGYCSC 742



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 178/337 (52%), Gaps = 30/337 (8%)

Query: 2   KAKHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL 61
           +A   L   +D L S G    E   T ++  C  +  ++L  ++ S + +     ++  +
Sbjct: 240 QAARSLSFFMDML-SDGMKPNEYTLTSVLSACCVMLTLDLGAQIHS-LSIKLGYGSSILI 297

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            N +++ Y K G L  A+ LF+ M   ++++WNA+++ HA+   + DL          D 
Sbjct: 298 KNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAK---MMDLA--------EDD 346

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
           V+        A+K  S  AL +F ++ +   +P  +T  S L+ C+ L+ L +G+QIHG+
Sbjct: 347 VA--------AHKSGS-TALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQ 397

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
           I+   +  +V V  AL  MY K G IDKA   F  M +R ++SW  MI+G+ ++G  ++ 
Sbjct: 398 IIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQA 457

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIV 296
           + LF++M+L+G+ P++VT   +L AC   G  D+A   F +++++ N+      +  +I 
Sbjct: 458 LQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQKQYNIKPVMDHFACLID 517

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
            Y + G+ E+A  + ++M   +  P++   S +++ C
Sbjct: 518 MYLRLGRVEEAFDVVHKM---NFEPNETIWSMLIAGC 551



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 98/183 (53%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G + D   ++ ++    + G ++ A ++F  +  ++   WTT++ GY QN     AL LF
Sbjct: 88  GFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLF 147

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            +ML     P  +++  V+++C+ L S+  G+ VH   +   +D D  + ++L   Y K 
Sbjct: 148 IKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKF 207

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
              + A   F ++  ++V+SW S+I+    NGQ   +L+ +  +L + +KP+ +T  SVL
Sbjct: 208 RRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVL 267

Query: 432 SAC 434
           SAC
Sbjct: 268 SAC 270



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 23/208 (11%)

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
            +++HG  V  G  +DL V + L+++Y KCGV + A  VF+ +P RNV +W +++ GY Q
Sbjct: 77  ARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRRNVNAWTTLLTGYVQ 136

Query: 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH-----GI 456
           N   L AL L+ K+L+    P ++T   VL+AC      E G+     +   H      I
Sbjct: 137 NSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDTSI 196

Query: 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAAR 516
             SL  +        R     KA  +IK    + + + W++++S C   G       AAR
Sbjct: 197 GNSLSSFYSKFR---RLEFAIKAFKIIK----EKDVISWTSVISSCCDNGQ------AAR 243

Query: 517 HL-FELEPINAG----PYIMLSNMYAAC 539
            L F ++ ++ G     Y + S + A C
Sbjct: 244 SLSFFMDMLSDGMKPNEYTLTSVLSACC 271



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 21/211 (9%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++   AL+S + + GS+      F +MP R  +S+ + I GFA  G S++ALQ+F  
Sbjct: 404 LADVVVGTALVSMYNKCGSIDKASKAFLEMPSRTMISWTSMITGFARHGLSQQALQLFED 463

Query: 147 MQKDRFEPTDYTHVSALNACAQ---------LLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           M+    +P   T V  L+AC+            +L + KQ + K V+ +          L
Sbjct: 464 MRLVGIKPNQVTFVGVLSACSHAGLADEALYYFELMQ-KQYNIKPVMDHFA-------CL 515

Query: 198 TDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256
            DMY + G +++A  +  +MN   N   W+++I+G   +G  K  +  +   QLL L P 
Sbjct: 516 IDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSHG--KSDLGFYAAEQLLKLKPK 573

Query: 257 EV-TVSNILGACFQTGRIDDAGRLFHVIKEK 286
           +V T  ++L      GR  D  ++  ++KE+
Sbjct: 574 DVETYVSLLNMHISAGRWKDVSKVRKLMKEE 604


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 326/591 (55%), Gaps = 52/591 (8%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N+   +  LLH YA    L           +  +   +ALL  + ++G + + R +F +M
Sbjct: 129 NSDVNYGELLHGYAVKTGL-----------VNSVFVGSALLDMYTKNGKIFEGRRVFHEM 177

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P+R+ VS+   I G    G+++EAL  FS M + R E   YT   AL ACA    L  G+
Sbjct: 178 PMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGR 237

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH + +      + FV N L  MY K G+++    LF++M+ R++VSW  +I+  ++ G
Sbjct: 238 EIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMG 297

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---------------------- 274
           Q +  +  F  M+   ++P+E T + ++  C    RI+                      
Sbjct: 298 QEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVEN 357

Query: 275 -------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                         +  +FH +  +D V W+T+I GY+Q G   +A  L + M  E  +P
Sbjct: 358 SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKP 417

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
            +F+++SV+S+C  +A L HG+ +H   + +G++   +V SALI+MYCKCG  ++A  +F
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           +     ++VSW +MINGYA++G   E + L++K+ +  L+PDS TF+ VLSAC HA L +
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G  +F+++S  + I+PS +HY CMI+LL R+  +  A  +I+++P   + ++WSTLL  
Sbjct: 538 LGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C + GD++ G   A  + +LEP  AG +I L+N+YA+ G+W + A IR  MKSK V K  
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK------LQEAGFSP 606
            +SWI++ + V  FV+ DR+HP+ E IY  L  L  +      +QE GF P
Sbjct: 658 GWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCVQETGFLP 708



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 152/561 (27%), Positives = 249/561 (44%), Gaps = 110/561 (19%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL--HNRLLHFYAKSGKLFYARDLFD 83
           +T   +  T   D+++ +R   ++  N +  + T L   N+ L    K+G L  AR +FD
Sbjct: 14  FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           KM  +D ISW  L+S                               G+ N   S EAL +
Sbjct: 74  KMSQKDEISWTTLIS-------------------------------GYVNANDSSEALLL 102

Query: 144 FSRMQKD---RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           F  M+ +   R +P  +    A  AC    D+  G+ +HG  V   L  +VFV +AL DM
Sbjct: 103 FKNMRVESGLRIDP--FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDM 160

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G+I + R +F  M  RN+VSW  +I+G ++ G  K+ +  F EM    +  D  T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 261 SNILGACFQTGRIDDAGR------------------------------------LFHVIK 284
           +  L AC  +G + + GR                                    LF  + 
Sbjct: 221 AIALKACADSGAL-NYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +D V WTT+I    Q G+EE A+  F  M   DV P++++ ++V+S CA LA +  G+ 
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H   + LG+   L V ++++ MY KCG    +  +F+ M  R++VSW+++I GY+Q G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGH 399

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EA  L   +  E  KP  F   SVLSAC +  + E G+     + ++ G+  +    +
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-GLEHTAMVLS 458

Query: 465 CMINLLGRSSDVDKA-------------------------------VDLIKSLPH---KP 490
            +IN+  +   +++A                               +DL + +P    +P
Sbjct: 459 ALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRP 518

Query: 491 NSLIWSTLLSVCAMKGDIKHG 511
           +S+ +  +LS C+  G +  G
Sbjct: 519 DSVTFIGVLSACSHAGLVDLG 539


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 326/562 (58%), Gaps = 37/562 (6%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   N L+  + +   V+  R LFD+M +++ +S+ T I+G+    F  EA+++F  M 
Sbjct: 172 DVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMN 231

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  ++P  +   S L +C  L  L +G+Q+H   +  NL  N FV+N L DMYAK   + 
Sbjct: 232 RLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLX 291

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD M  +N++S+N MI GY    +  + ++LF EM++    P  +T  ++LG   
Sbjct: 292 DAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSA 351

Query: 269 -----------------------------------QTGRIDDAGRLFHVIKEKDNVCWTT 293
                                              +   + DA  +F  + EKD V W  
Sbjct: 352 SLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNA 411

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           M  GYTQ+ + E+AL L++ +     +P++F+ ++++++ + LASL HGQ  H + V +G
Sbjct: 412 MFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 471

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
           +D    V++AL+DMY KCG  ++A  +FN    R+VV WNSMI+ +AQ+G+  EAL ++ 
Sbjct: 472 LDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFR 531

Query: 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473
           ++++E ++P+  TFV+VLSAC HA   E G NHF+S+    GI P  +HYAC+++LLGRS
Sbjct: 532 EMMKEGIQPNYVTFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRS 590

Query: 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533
             + +A + I+ +P +P +++W +LLS C + G+++ G+ AA      +P ++G YI+LS
Sbjct: 591 GKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLS 650

Query: 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELS 593
           N++A+ G W DV  +R  M S  V K    SWIE++NKV+ F++   TH E ++I   L 
Sbjct: 651 NIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARXTTHREADMIGSVLD 710

Query: 594 KLIKKLQEAGFSPN-TKLVLHD 614
            LI+ ++ AG+ P+ T L+++D
Sbjct: 711 ILIQHIKGAGYVPDATALLMND 732



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 148/522 (28%), Positives = 252/522 (48%), Gaps = 48/522 (9%)

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           F  R  FD+    D+    +L+  ++++G ++  R +FD++  + +V++ T IAG+   G
Sbjct: 62  FVVRSGFDQ----DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCG 117

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
            S  +L++F++M++    P  Y   S L+AC+ L  L  GKQIH  ++      +V V N
Sbjct: 118 RSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVN 177

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            L D Y K   +   R LFD+M  +N++SW  MISGY++N    + + LF EM  LG  P
Sbjct: 178 VLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKP 237

Query: 256 DEVTVSNILGAC--------------------------FQTGRID---------DAGRLF 280
           D    +++L +C                           + G ID         DA ++F
Sbjct: 238 DGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVF 297

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            V+ E++ + +  MI GY+   K  +AL LF+EM      P   +  S++   A L +L 
Sbjct: 298 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALE 357

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
             + +HG  +  GV  DL   SALID+Y KC    DA  VF  M  +++V WN+M  GY 
Sbjct: 358 LSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYT 417

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN-HFDSISAVHGITPS 459
           Q+ ++ EAL LY  L     KP+ FTF ++++A  +      GQ  H   +       P 
Sbjct: 418 QHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF 477

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           + +   ++++  +   +++A  +  S   + + + W++++S  A  G+ +      R + 
Sbjct: 478 VTN--ALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMISTHAQHGEAEEALGMFREMM 534

Query: 520 ELEPINAGPYIMLSNMYAAC---GRWEDVASIRSSMKSKNVK 558
           + E I    Y+    + +AC   G  ED  +  +SM    +K
Sbjct: 535 K-EGIQPN-YVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIK 574



 Score =  208 bits (530), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 152/553 (27%), Positives = 258/553 (46%), Gaps = 102/553 (18%)

Query: 133 NKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNV 191
           ++G+S EAL VF  +Q+   E P ++   S + AC QL  + +G Q+HG +V      +V
Sbjct: 13  DEGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDV 72

Query: 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251
           +V  +L D Y+K G+I+ AR +FD++  +  V+W  +I+GY K G+    ++LF +M+  
Sbjct: 73  YVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMRET 132

Query: 252 GLNPDEVTVSNILGAC----FQTG-------------------------------RIDDA 276
            + PD   VS++L AC    F  G                               R+   
Sbjct: 133 NVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAG 192

Query: 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
            +LF  +  K+ + WTTMI GY QN  + +A+ LF EM     +PD F+ +SV++SC  L
Sbjct: 193 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSL 252

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            +L  G+ VH   +   ++ +  V + LIDMY K  +  DA  VF++M  +NV+S+N+MI
Sbjct: 253 EALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMI 312

Query: 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456
            GY+   +  EAL L+ ++      P   TFVS+L   + A LF       +    +HG+
Sbjct: 313 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLG--VSASLFA-----LELSKQIHGL 365

Query: 457 T----PSLDHYA--CMINLLGRSSDV-------------------------------DKA 479
                 SLD +A   +I++  + S V                               ++A
Sbjct: 366 IIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEA 425

Query: 480 VDLIKSLP---HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM--LSN 534
           + L  +L     KPN   ++ L++  +    ++HG+     L ++  ++  P++   L +
Sbjct: 426 LKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM-GLDFCPFVTNALVD 484

Query: 535 MYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSK 594
           MYA CG  E+   + +S   ++V       W       +  +S    H E     EE   
Sbjct: 485 MYAKCGSIEEARKMFNSSIWRDV-----VCW-------NSMISTHAQHGEA----EEALG 528

Query: 595 LIKKLQEAGFSPN 607
           + +++ + G  PN
Sbjct: 529 MFREMMKEGIQPN 541


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 339/594 (57%), Gaps = 38/594 (6%)

Query: 139 EALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           EAL++F  ++ +  ++    T+ + ++AC  L  +R  K++   ++   L  + ++RN +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--------- 248
             M+ K G +  AR LFD M  +N++SWN +I G +  G   +   LF  M         
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGS 232

Query: 249 --------------------QL------LGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
                               QL       G+  D      ++    + G I+DA  +F  
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + EK  V W ++I GY  +G  E+AL ++ EM    V+ D F+ S ++  CA+LASL H 
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +  H   V  G   D++ ++AL+D+Y K G  +DA  VF+MMP +NV+SWN++I GY  +
Sbjct: 353 KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNH 412

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+ +EA+ +++++L E + P+  TF++VLSAC ++ L +RG   F+S+S  H I P   H
Sbjct: 413 GRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMH 472

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           YACMI LLGR   +D+A  LIK  P KP   +W+ LL+ C +  + + G+ AA  L+ + 
Sbjct: 473 YACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMG 532

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P     Y++L N+Y   GR E+ A++  ++K + ++   A SWIEI  + + F+S D+ H
Sbjct: 533 PEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCH 592

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
            +++ IY++L +L+ ++ + G+ P  K +L D  E+E+ + + YHSEKLA+A+ LI    
Sbjct: 593 AQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEE-RVLLYHSEKLAIAFGLINTSD 651

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             TP++I+++ R+CGDCH  +K  + +  R I++RD++RFHHF  G+CSC D W
Sbjct: 652 W-TPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/507 (24%), Positives = 217/507 (42%), Gaps = 114/507 (22%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E Y  LV  C  +  +   K++ ++M  +  +P+  +L NR+L  + K G +  AR LFD
Sbjct: 132 ETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDE-YLRNRVLLMHVKCGMMIDARRLFD 190

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP ++I+SW                               NT I G  + G   EA ++
Sbjct: 191 EMPEKNILSW-------------------------------NTIIGGLVDAGDYFEAFRL 219

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M +   +      V+ + A A L  +  G+Q+H   +   +GG+VFV  AL DMY+K
Sbjct: 220 FLMMWQXFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSK 279

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I+ A+ +FD+M  +  V WN +I+GY  +G  ++ + ++ EM+  G+  D  T S I
Sbjct: 280 CGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSII 339

Query: 264 LGACFQT-----------------------------------GRIDDAGRLFHVIKEKDN 288
           +  C +                                    GRI+DA  +F ++  K+ 
Sbjct: 340 IRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV 399

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + W  +I GY  +G+  +A+ +F  ML E + P+  +  +V+S+C+              
Sbjct: 400 ISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS-------------- 445

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMINGYAQNG 403
                                  G++D  W +F  M   + +      +  MI    + G
Sbjct: 446 ---------------------YSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREG 484

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDH 462
              EA AL   +     KP    + ++L+AC     FE G+    +   ++G+ P  L +
Sbjct: 485 LLDEAFAL---IKDAPFKPTVNMWAALLTACRVHKNFELGKF---AAEKLYGMGPEKLSN 538

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHK 489
           Y  ++N+   S  +++A  +I++L  +
Sbjct: 539 YVVLLNIYNXSGRLEEAAAVIQTLKRR 565



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 158/307 (51%), Gaps = 11/307 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  +++ GS++D + +FD+MP + +V +N+ IAG+A  G+S EAL ++  M+
Sbjct: 266 DVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMR 325

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +  ++T    +  CA+L  L   KQ H  +V    G ++    AL D+Y+K G I+
Sbjct: 326 DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIE 385

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD M ++N++SWN +I+GY  +G+  + +++F+ M   G+ P+ VT   +L AC 
Sbjct: 386 DAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445

Query: 269 QTGRIDDAGRLF------HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
            +G  D    +F      H IK +  + +  MI    + G  ++A  L  +      +P 
Sbjct: 446 YSGLSDRGWEIFESMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIKD---APFKPT 501

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
               ++++++C    +   G+    K   +G  + L     L+++Y   G  ++A  V  
Sbjct: 502 VNMWAALLTACRVHKNFELGKFAAEKLYGMG-PEKLSNYVVLLNIYNXSGRLEEAAAVIQ 560

Query: 383 MMPTRNV 389
            +  R +
Sbjct: 561 TLKRRGL 567


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/647 (33%), Positives = 346/647 (53%), Gaps = 39/647 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           ++++  NAL+  +++ G + + + +F     ++ VS+NT + GF+ +G +     V  +M
Sbjct: 325 KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384

Query: 148 --QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
               +  +  + T ++A+  C     L   K++H   +      N  V NA    YAK G
Sbjct: 385 LAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 444

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A+ +F  + ++ + SWN +I G+ ++  P+  +D   +M++ GL PD  TV ++L 
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                      G +     LF  +++K  V 
Sbjct: 505 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVS 564

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W T+I GY QNG  + AL +F +M+   ++    S+  V  +C+ L SL  G+  H  A+
Sbjct: 565 WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYAL 624

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              ++DD  ++ +LIDMY K G    +  VFN +  ++  SWN+MI GY  +G   EA+ 
Sbjct: 625 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIK 684

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L++++ +    PD  TF+ VL+AC H+ L   G  + D + +  G+ P+L HYAC+I++L
Sbjct: 685 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 744

Query: 471 GRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           GR+  +DKA+ ++ + +  + +  IW +LLS C +  +++ GE  A  LFELEP     Y
Sbjct: 745 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENY 804

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LSN+YA  G+WEDV  +R  M   +++K A  SWIE++ KV  FV  +R     E I 
Sbjct: 805 VLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIK 864

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
              S L  K+ + G+ P+T  V HD  EEEK++ +  HSEKLAL Y LIK   G T IR+
Sbjct: 865 SLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTT-IRV 923

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R+C DCH   K  S ++ R I++RD+ RFHHF  G CSC D W
Sbjct: 924 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 172/381 (45%), Gaps = 42/381 (11%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEP 154
           +++ +A  GS  D R +FD +  ++   +N  I+ ++      E L+ F  M       P
Sbjct: 126 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 185

Query: 155 TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214
             +T+   + ACA + D+  G  +HG +V   L  +VFV NAL   Y   G +  A  LF
Sbjct: 186 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLF 245

Query: 215 DRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL----GLNPDEVTVSNILGACF-- 268
           D M  RNLVSWN MI  +  NG  ++   L  EM          PD  T+  +L  C   
Sbjct: 246 DIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCARE 305

Query: 269 ---------------------------------QTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G I +A  +F +   K+ V W TM+
Sbjct: 306 REIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 365

Query: 296 VGYTQNGKEEDALILFNEMLS--EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
            G++  G       +  +ML+  EDV+ D+ +I + V  C   + L   + +H  ++   
Sbjct: 366 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQE 425

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYD 413
              + LV++A +  Y KCG    A  VF+ + ++ V SWN++I G+AQ+     +L  + 
Sbjct: 426 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 485

Query: 414 KLLQENLKPDSFTFVSVLSAC 434
           ++    L PDSFT  S+LSAC
Sbjct: 486 QMKISGLLPDSFTVCSLLSAC 506



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 197/437 (45%), Gaps = 79/437 (18%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLH-----FYAKSGKLFYARDLFDKMPLRDIISWNALLSA 99
           L S  +L+ Y     F++N L+       YAK G L YA+ +F  +  + + SWNAL+  
Sbjct: 411 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 470

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           HA+S                                  R +L    +M+     P  +T 
Sbjct: 471 HAQSND-------------------------------PRLSLDAHLQMKISGLLPDSFTV 499

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
            S L+AC++L  LR GK++HG I+   L  ++FV  ++  +Y   GE+   + LFD M +
Sbjct: 500 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 559

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------ 267
           ++LVSWN +I+GYL+NG P + + +F++M L G+    +++  + GAC            
Sbjct: 560 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 619

Query: 268 -----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                   + G I  + ++F+ +KEK    W  MI+GY  +G  
Sbjct: 620 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 679

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSA 363
           ++A+ LF EM      PD  +   V+++C     ++ G + +       G+  +L   + 
Sbjct: 680 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 739

Query: 364 LIDMYCKCGVTDDAWTVF--NMMPTRNVVSWNSMING--YAQNGQDLEALALYDKLLQ-E 418
           +IDM  + G  D A  V    M    +V  W S+++     QN +  E +A   KL + E
Sbjct: 740 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA--AKLFELE 797

Query: 419 NLKPDSFTFVSVLSACL 435
             KP+++  +S L A L
Sbjct: 798 PEKPENYVLLSNLYAGL 814



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 133/270 (49%), Gaps = 20/270 (7%)

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFN 312
           L  D+V  + I+      G  DD+  +F  ++ K+   W  +I  Y++N   ++ L  F 
Sbjct: 116 LRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFI 175

Query: 313 EMLSE-DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
           EM+S  D+ PD F+   V+ +CA ++ +  G  VHG  V  G+ +D+ V +AL+  Y   
Sbjct: 176 EMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTH 235

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN----LKPDSFTF 427
           G   DA  +F++MP RN+VSWNSMI  ++ NG   E+  L  ++++EN      PD  T 
Sbjct: 236 GFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATL 295

Query: 428 VSVLSACLHADLFERGQNHFDSISAVHG--ITPSLDHYACMINLL----GRSSDVDKAVD 481
           V+VL  C        G+        VHG  +   LD    + N L     +   +  A  
Sbjct: 296 VTVLPVCAREREIGLGK-------GVHGWAVKLRLDKELVLNNALMDMYSKCGCITNA-Q 347

Query: 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           +I  + +  N + W+T++   + +GD  HG
Sbjct: 348 MIFKMNNNKNVVSWNTMVGGFSAEGD-THG 376


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/439 (41%), Positives = 279/439 (63%), Gaps = 1/439 (0%)

Query: 258 VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317
           V+++ ++    + G ID+A  LF  ++E+D +CW  MI GY Q+G   + L+LF +ML+ 
Sbjct: 7   VSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNA 66

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
            VRP++ ++ +V+S+C +  +L  G+ VH      G+  ++ V ++LIDMY KCG  +DA
Sbjct: 67  KVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDA 126

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437
             VF  +  ++VV+WNSM+ GYA +G   +AL L+ ++     +P   TF+ VL+AC HA
Sbjct: 127 RLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHA 186

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497
            L   G   F S+   +GI P ++HY CM+NLLGR+  +++A +L+K++    + ++W T
Sbjct: 187 GLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGT 246

Query: 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
           LL  C + G+I  GE  A +L      N+G Y++LSN+YAA G WE VA +R+ MK    
Sbjct: 247 LLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGF 306

Query: 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617
           +K    S IE++NKVH+F++ D  HP++  IYE L ++   L+  G++P T +VLHD ++
Sbjct: 307 EKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLED 366

Query: 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILR 677
            +K +S+  HSEKLALA+ LI    G T I+I+KN+RVC DCH   K  S I GR +++R
Sbjct: 367 AQKERSLGVHSEKLALAFGLITTKPGTT-IKIVKNLRVCADCHAVTKLISKITGRKVVMR 425

Query: 678 DSNRFHHFVGGNCSCKDNW 696
           D NRFHHFV G CSC D W
Sbjct: 426 DRNRFHHFVNGLCSCGDYW 444



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/205 (32%), Positives = 121/205 (59%)

Query: 85  MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF 144
           MP + ++S  A+++ +A+ G + + R LFD +  RD++ +N  I G+A  G   E L +F
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 145 SRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKG 204
            +M   +  P + T ++ L+AC Q   L  G+ +H  I    +G NV V  +L DMY+K 
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264
           G ++ AR +F+R++N+++V+WN M+ GY  +G  +  + LF+EM ++G  P ++T   +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 265 GACFQTGRIDDAGRLFHVIKEKDNV 289
            AC   G + +  + F+ +K++  +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGI 205



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 83/152 (54%), Gaps = 2/152 (1%)

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414
           +  L+  +A+I  Y K G+ D+A  +F+ +  R+ + WN MI+GYAQ+G   E L L+ +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 415 LLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474
           +L   ++P+  T ++VLSAC      E G+     I   +GI  ++     +I++  +  
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIEN-NGIGINVRVGTSLIDMYSKCG 121

Query: 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
            ++ A  + + + +K + + W++++   AM G
Sbjct: 122 SLEDARLVFERISNK-DVVAWNSMVVGYAMHG 152



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 32/136 (23%)

Query: 33  CTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS 92
           C +   +E  + + S+++ N    N   +   L+  Y+K G L  AR +F+++  +D+++
Sbjct: 82  CGQTGALETGRWVHSYIENNGIGINVR-VGTSLIDMYSKCGSLEDARLVFERISNKDVVA 140

Query: 93  WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRF 152
           WN+++  +A  G                               FS++AL++F  M    +
Sbjct: 141 WNSMVVGYAMHG-------------------------------FSQDALRLFKEMCMIGY 169

Query: 153 EPTDYTHVSALNACAQ 168
           +PTD T +  LNAC+ 
Sbjct: 170 QPTDITFIGVLNACSH 185


>gi|326524233|dbj|BAK00500.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 688

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/663 (33%), Positives = 324/663 (48%), Gaps = 107/663 (16%)

Query: 101 ARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM-QKDRFEPTDYTH 159
           AR     D R L D+ P R + ++   IAG A  G   + +  F+ M  +    P  +  
Sbjct: 63  ARGCHFHDARWLLDETPKRSAAAWTAVIAGCARAGRHADGMGAFAEMLAEGGAAPNAFVL 122

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG-------------E 206
            + L  C+ L D+  GK+IHG ++   +  +  + NA+ DMYAK G             E
Sbjct: 123 AAVLRCCSGLGDVESGKRIHGWLLRNGVHLDRVLCNAVLDMYAKSGDYELTKRAFRAMVE 182

Query: 207 IDKARW------------------LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248
           +D   W                  LFD    R+  SWN +ISG ++NG   K +D    M
Sbjct: 183 VDAVSWNIVISACLQSGDILGSTQLFDESPVRDTSSWNTIISGLMRNGCAAKALDRLYHM 242

Query: 249 QLLGLNPDEVTVSNILGACFQTGRIDDA----GRLFHVIKEKD----------------- 287
              G+  +  T S  L        +D      GR+     E D                 
Sbjct: 243 ARAGVEFNHYTYSTALALAGMLSMLDLGRQLHGRVLTSALEADAFVRSSLMDMYCKCSSI 302

Query: 288 -----------------NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330
                               W+TMI GY QNG+EE+A   F  ML E V  D+F+++S V
Sbjct: 303 KTAVLVFERWSHLTGDMKFAWSTMIAGYVQNGREEEAFEFFRLMLCEGVAADQFTLTSAV 362

Query: 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV 390
           ++CA       G V  G+                               +F++ PT+NV 
Sbjct: 363 AACANA-----GMVEQGR-------------------------------MFDIAPTKNVA 386

Query: 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSI 450
            W SM+  YA +G+   A+ L++++  E +KP+  T V VLSAC H  L   G++ F  +
Sbjct: 387 LWTSMLCSYASHGKGRMAIKLFNRMTAEKIKPNEVTLVGVLSACSHGRLVSEGEHFFKLM 446

Query: 451 SAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510
              +GI PS++HY CM++L GR+  +DKA   I     K  S++W TLLS C +  D++H
Sbjct: 447 QEEYGIVPSIEHYNCMVDLYGRAGLLDKANIFINENKIKHESIVWKTLLSACRVHKDMEH 506

Query: 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDN 570
            ++A+  L +LE  +AG Y+MLSNMYA   +W D + +RS M  + V+K    SWI + N
Sbjct: 507 AKLASESLIQLEQCDAGSYVMLSNMYATHSKWRDTSKLRSLMLERGVRKQPGRSWIHLKN 566

Query: 571 KVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEK 630
            VH FV+ D  HP +  IY  L KL+++L+E G++    LV HD +EE++  ++ +HSEK
Sbjct: 567 TVHTFVAGDAAHPRSSEIYTYLEKLMERLKELGYTSRIDLVAHDVEEEQRETALKFHSEK 626

Query: 631 LALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNC 690
           LA+A+ +I  P G TP+RI KN+R+C DCH  +K+ S    R I++RD  RFHHF    C
Sbjct: 627 LAMAFGIISTPSG-TPLRIFKNLRICVDCHEAIKYVSRATDREIVVRDLYRFHHFKDAKC 685

Query: 691 SCK 693
           SC+
Sbjct: 686 SCE 688



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 220/431 (51%), Gaps = 21/431 (4%)

Query: 10  AIDTLYSRGQAATEEAYTQLVLDC-TRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHF 68
           A   + + G AA        VL C + + DVE  KR+   +  N    +   L N +L  
Sbjct: 105 AFAEMLAEGGAAPNAFVLAAVLRCCSGLGDVESGKRIHGWLLRNGVHLDRV-LCNAVLDM 163

Query: 69  YAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAI 128
           YAKSG     +  F  M   D +SWN ++SA  +SG +     LFD+ P+RD+ S+NT I
Sbjct: 164 YAKSGDYELTKRAFRAMVEVDAVSWNIVISACLQSGDILGSTQLFDESPVRDTSSWNTII 223

Query: 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG 188
           +G    G + +AL     M +   E   YT+ +AL     L  L  G+Q+HG+++   L 
Sbjct: 224 SGLMRNGCAAKALDRLYHMARAGVEFNHYTYSTALALAGMLSMLDLGRQLHGRVLTSALE 283

Query: 189 GNVFVRNALTDMYAKGGEIDKARWLFDR---MNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            + FVR++L DMY K   I  A  +F+R   +      +W+ MI+GY++NG+ ++  + F
Sbjct: 284 ADAFVRSSLMDMYCKCSSIKTAVLVFERWSHLTGDMKFAWSTMIAGYVQNGREEEAFEFF 343

Query: 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEE 305
           + M   G+  D+ T+++ + AC   G ++  GR+F +   K+   WT+M+  Y  +GK  
Sbjct: 344 RLMLCEGVAADQFTLTSAVAACANAGMVEQ-GRMFDIAPTKNVALWTSMLCSYASHGKGR 402

Query: 306 DALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVV-HGKAVV------LGVDDDL 358
            A+ LFN M +E ++P++ ++  V+S+C+      HG++V  G+          G+   +
Sbjct: 403 MAIKLFNRMTAEKIKPNEVTLVGVLSACS------HGRLVSEGEHFFKLMQEEYGIVPSI 456

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRN-VVSWNSMINGYAQNGQDLEALALYDKLLQ 417
              + ++D+Y + G+ D A    N    ++  + W ++++   +  +D+E   L  + L 
Sbjct: 457 EHYNCMVDLYGRAGLLDKANIFINENKIKHESIVWKTLLSA-CRVHKDMEHAKLASESLI 515

Query: 418 ENLKPDSFTFV 428
           +  + D+ ++V
Sbjct: 516 QLEQCDAGSYV 526



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 156/394 (39%), Gaps = 83/394 (21%)

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-GLNPDEVT 259
           +A+G     ARWL D    R+  +W  +I+G  + G+    +  F EM    G  P+   
Sbjct: 62  FARGCHFHDARWLLDETPKRSAAAWTAVIAGCARAGRHADGMGAFAEMLAEGGAAPNAFV 121

Query: 260 VSNILGACFQTGRIDDAGRL-----------------------------------FHVIK 284
           ++ +L  C   G ++   R+                                   F  + 
Sbjct: 122 LAAVLRCCSGLGDVESGKRIHGWLLRNGVHLDRVLCNAVLDMYAKSGDYELTKRAFRAMV 181

Query: 285 EKDNVCW-------------------------------TTMIVGYTQNGKEEDALILFNE 313
           E D V W                                T+I G  +NG    AL     
Sbjct: 182 EVDAVSWNIVISACLQSGDILGSTQLFDESPVRDTSSWNTIISGLMRNGCAAKALDRLYH 241

Query: 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
           M    V  + ++ S+ ++    L+ L  G+ +HG+ +   ++ D  V S+L+DMYCKC  
Sbjct: 242 MARAGVEFNHYTYSTALALAGMLSMLDLGRQLHGRVLTSALEADAFVRSSLMDMYCKCSS 301

Query: 374 TDDAWTVF---NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
              A  VF   + +      +W++MI GY QNG++ EA   +  +L E +  D FT  S 
Sbjct: 302 IKTAVLVFERWSHLTGDMKFAWSTMIAGYVQNGREEEAFEFFRLMLCEGVAADQFTLTSA 361

Query: 431 LSACLHADLFERGQNHFDSISAVHGI---TPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487
           ++AC +A + E+G+  FD I+    +   T  L  YA      G+     K  + + +  
Sbjct: 362 VAACANAGMVEQGRM-FD-IAPTKNVALWTSMLCSYASH----GKGRMAIKLFNRMTAEK 415

Query: 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521
            KPN +    +LS C+    +  GE    H F+L
Sbjct: 416 IKPNEVTLVGVLSACSHGRLVSEGE----HFFKL 445


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 220/659 (33%), Positives = 355/659 (53%), Gaps = 55/659 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D      L++ +A+ G+++  R +FD++P R+ VS+ T + G+ +      A+QVF  M
Sbjct: 102 KDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREM 161

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
            +    PT+YT  +AL+A + L     GKQIHG  +   +  +  + N+L  +Y+K G +
Sbjct: 162 LEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSL 221

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A   F R+ ++N++SW  +IS +  NG+    +  F EM    + P+E T+++ L  C
Sbjct: 222 ECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLC 281

Query: 268 -----------------------------------FQTGRIDDAGRLFHVIKEKDNVCWT 292
                                               + G I +A +LF  ++    V W 
Sbjct: 282 CVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWN 341

Query: 293 TMIVGYT-------------QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
            MI G+              Q G E  AL +F ++    ++PD F+ SSV+S C+ L +L
Sbjct: 342 AMIAGHARMMDFAKDDLAAHQCGTE--ALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVAL 399

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             G+ VH + +  G   D++V +AL++MY KCG  + A   F  M  R ++SW SMI GY
Sbjct: 400 EQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGY 459

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
           AQNGQ  +AL L++ +    ++P+  TFV VLSAC HA + +   ++F  +   + ITP 
Sbjct: 460 AQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPV 519

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           +DHYAC+I++  R   +D+A D IK +  +PN  IWS L++ C  +G ++ G  AA  L 
Sbjct: 520 MDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGFYAAEQLL 579

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
            L+P +   Y +L NMY + G+W++V+ +R  MK + + +   +SWI I +K++ F    
Sbjct: 580 NLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKIYSFKRNA 639

Query: 580 RTHPETEIIYEELSKLIKKLQEAGF----SPNTKLVLHDTQEEEKVKSICYHSEKLALAY 635
           R+H ++  +YE L  L +K +  G+    S        D  EE+ + SI YHSEKLA+A+
Sbjct: 640 RSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHSEKLAIAF 699

Query: 636 CLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
            L+   + V PIR+ K+I +C DCH F++  S +  R II+RDS R H F+ G+CSC D
Sbjct: 700 GLLNTSNAV-PIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGHCSCGD 757



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 185/388 (47%), Gaps = 46/388 (11%)

Query: 18  GQAATE-EAYTQLVLDCTRVNDVELAKRLQ-----SHMDLNF----------YEPNTTFL 61
           G+AAT  + + +++ +C   N+  L   L        +D+            +E N   +
Sbjct: 250 GEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLP-I 308

Query: 62  HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDS 121
            N +++ Y K G +  A+ LFD+M    +++WNA+++ HAR                   
Sbjct: 309 KNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHAR------------------- 349

Query: 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181
              + A    A      EAL +F ++ +   +P  +T  S L+ C+ L+ L +G+Q+H +
Sbjct: 350 -MMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQ 408

Query: 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241
            +      +V V  AL +MY K G I++A   F  M+ R L+SW  MI+GY +NGQP++ 
Sbjct: 409 TIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQA 468

Query: 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIV 296
           + LF++M+L G+ P+++T   +L AC   G +D+A   F ++K +  +      +  +I 
Sbjct: 469 LLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKNEYKITPVMDHYACLID 528

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            + + G+ ++A     EM   D+ P++F  S +++ C     L  G     + + L    
Sbjct: 529 MFVRLGRLDEAFDFIKEM---DLEPNEFIWSILIAGCRSQGKLELGFYAAEQLLNLK-PK 584

Query: 357 DLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           D    + L++MY   G   +   V  MM
Sbjct: 585 DTETYNLLLNMYLSAGKWKEVSRVRKMM 612



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 100/183 (54%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G + D   ++ ++    + G ++ A ++F  +  ++ V WTT++ GY  + K E A+ +F
Sbjct: 99  GAHKDAFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVF 158

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
            EML     P  +++ + +S+ + L S   G+ +HG ++   ++ D  + ++L  +Y KC
Sbjct: 159 REMLEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKC 218

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  + A   F  +  +NV+SW ++I+ +  NG+    L  + ++L E ++P+ FT  S L
Sbjct: 219 GSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSAL 278

Query: 432 SAC 434
           S C
Sbjct: 279 SLC 281



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 9/216 (4%)

Query: 301 NGKEEDALILFNEMLS---EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           +G  E   + F E LS   E  + +      ++  C     +   Q +H   V  G   D
Sbjct: 44  DGVSEARCLDFREALSFIREGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKD 103

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             + + L+++Y KCG  + A  VF+ +P RNVVSW +++ GY  + +   A+ ++ ++L+
Sbjct: 104 AFLMTFLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLE 163

Query: 418 ENLKPDSFTFVSVLSAC--LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475
               P ++T  + LSA   LH+    + Q H  SI        S+ +  C  +L  +   
Sbjct: 164 AGAYPTNYTLGTALSASSDLHSKELGK-QIHGYSIKYRIEFDASIGNSLC--SLYSKCGS 220

Query: 476 VDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
           ++ AV   + +  K N + W+T++S     G+   G
Sbjct: 221 LECAVKAFRRIRDK-NVISWTTVISAWGDNGEAATG 255



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 27/214 (12%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D++   AL++ + + GS++     F +M IR  +S+ + I G+A  G  ++AL +F  
Sbjct: 415 LSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISWTSMITGYAQNGQPQQALLLFED 474

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN----------- 195
           M+     P   T V  L+AC+           H  +V   L     ++N           
Sbjct: 475 MRLAGVRPNKITFVGVLSACS-----------HAGMVDEALDYFQMMKNEYKITPVMDHY 523

Query: 196 -ALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253
             L DM+ + G +D+A      M+   N   W+++I+G    G+ +  +  +   QLL L
Sbjct: 524 ACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLE--LGFYAAEQLLNL 581

Query: 254 NPDEVTVSN-ILGACFQTGRIDDAGRLFHVIKEK 286
            P +    N +L      G+  +  R+  ++KE+
Sbjct: 582 KPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEE 615


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/575 (35%), Positives = 338/575 (58%), Gaps = 42/575 (7%)

Query: 76  FYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135
           F  R  FD+    D+    +L+  ++++G++++ R +FD++  + +V++ T IAG+   G
Sbjct: 176 FVVRSGFDQ----DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCG 231

Query: 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN 195
            S  +L++F++M++    P  Y   S L+AC+ L  L  GKQIH  ++      +V V N
Sbjct: 232 RSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVN 291

Query: 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255
            L D Y K   +   R LFD+M  +N++SW  MISGY++N    + + LF EM  LG  P
Sbjct: 292 VLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKP 351

Query: 256 DEVTVSNILGAC--------------------------FQTGRID---------DAGRLF 280
           D    +++L +C                           + G ID         DA ++F
Sbjct: 352 DGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVF 411

Query: 281 HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340
            V+ E++ + +  MI GY+   K  +AL LF+EM     +P++F+ ++++++ + LASL 
Sbjct: 412 DVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLR 471

Query: 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
           HGQ  H + V +G+D    V++AL+DMY KCG  ++A  +FN    R+VV WNSMI+ +A
Sbjct: 472 HGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHA 531

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
           Q+G+  EAL ++ ++++E ++P+  TFV+VLSAC HA   E G NHF+S+    GI P  
Sbjct: 532 QHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGF-GIKPGT 590

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HYAC+++LLGRS  + +A + I+ +P +P +++W +LLS C + G+++ G+ AA     
Sbjct: 591 EHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAIS 650

Query: 521 LEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDR 580
            +P ++G YI+LSN++A+ G W DV  +R  M S  V K    SWIE++NKV+ F++ D 
Sbjct: 651 TDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEPGRSWIEVNNKVNVFIARDT 710

Query: 581 THPETEIIYEELSKLIKKLQEAGFSPN-TKLVLHD 614
           TH E + I   L  LI+ ++ AG+ P+ T L+++D
Sbjct: 711 THREAD-IGSVLDILIQHIKGAGYVPDATALLMND 744



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 266/540 (49%), Gaps = 76/540 (14%)

Query: 59  TFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPI 118
           TFL N L++  +KS ++  AR +FDKMP +++I+W++++S                    
Sbjct: 84  TFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSM------------------- 124

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRGKQ 177
                       ++ +G+S EAL VF  +Q+   E P ++   S + AC QL  + +G Q
Sbjct: 125 ------------YSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQ 172

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           +HG +V      +V+V  +L D Y+K G I++AR +FD+++ +  V+W  +I+GY K G+
Sbjct: 173 LHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGR 232

Query: 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGAC----FQTG---------------------- 271
               ++LF +M+   + PD   VS++L AC    F  G                      
Sbjct: 233 SAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNV 292

Query: 272 ---------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
                    R+    +LF  +  K+ + WTTMI GY QN  + +A+ LF EM     +PD
Sbjct: 293 LIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPD 352

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
            F+ +SV++SC    +L  G+ VH   +   ++ D  V + LIDMY K  +  DA  VF+
Sbjct: 353 GFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFD 412

Query: 383 MMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442
           +M  +NV+S+N+MI GY+   +  EAL L+ ++     KP+ FTF ++++A  +      
Sbjct: 413 VMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRH 472

Query: 443 GQN-HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
           GQ  H   +       P + +   ++++  +   +++A  +  S   + + + W++++S 
Sbjct: 473 GQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMFNSSIWR-DVVCWNSMIST 529

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC---GRWEDVASIRSSMKSKNVK 558
            A  G+ +      R + + E I    Y+    + +AC   GR ED  +  +SM    +K
Sbjct: 530 HAQHGEAEEALGMFREMMK-EGIQPN-YVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIK 587



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 238/503 (47%), Gaps = 88/503 (17%)

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
           K IHG+I+V  L  + F+ N L ++ +K   +D AR +FD+M ++NL++W+ M+S Y + 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 236 GQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQ------------------------- 269
           G  ++ + +F ++Q   G +P+E  +++++ AC Q                         
Sbjct: 129 GYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYV 188

Query: 270 ----------TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                      G I++A  +F  + EK  V WTT+I GYT+ G+   +L LF +M   +V
Sbjct: 189 GTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNV 248

Query: 320 RPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
            PD++ +SSV+S+C+ L  L  G+ +H   +  G + D+ V + LID Y KC        
Sbjct: 249 VPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRK 308

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           +F+ M  +N++SW +MI+GY QN  D EA+ L+ ++ +   KPD F   SVL++C   + 
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREA 368

Query: 440 FERG-QNHFDSISA--------VHGIT---------------------PSLDHYACMINL 469
            E+G Q H  +I A         +G+                       ++  Y  MI  
Sbjct: 369 LEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEG 428

Query: 470 LGRSSDVDKAVDLIKSLP---HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526
                 + +A++L   +     KPN   ++ L++  +    ++HG+     L ++  ++ 
Sbjct: 429 YSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM-GLDF 487

Query: 527 GPYIM--LSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPE 584
            P++   L +MYA CG  E+   + +S   ++V       W       +  +S    H E
Sbjct: 488 CPFVTNALVDMYAKCGSIEEARKMFNSSIWRDV-----VCW-------NSMISTHAQHGE 535

Query: 585 TEIIYEELSKLIKKLQEAGFSPN 607
                EE   + +++ + G  PN
Sbjct: 536 A----EEALGMFREMMKEGIQPN 554



 Score = 82.8 bits (203), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 117/230 (50%), Gaps = 11/230 (4%)

Query: 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377
           ++RP +   ++++        + H +++HG+ +V G+  D  +++ LI++  K    D+A
Sbjct: 44  NLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNA 103

Query: 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK-PDSFTFVSVLSACLH 436
             VF+ MP +N+++W+SM++ Y+Q G   EAL ++  L +++ + P+ F   SV+ AC  
Sbjct: 104 RVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQ 163

Query: 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWS 496
             + E+G           G    +     +I+   ++ ++++A  +   L  K  ++ W+
Sbjct: 164 LGVVEKGA-QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEK-TAVTWT 221

Query: 497 TLLSVCAMKGDIKHGEMAAR-HLF-ELEPINAGP-YIMLSNMYAACGRWE 543
           T+++     G  K G  A    LF ++   N  P   ++S++ +AC   E
Sbjct: 222 TIIA-----GYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLE 266


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/647 (33%), Positives = 346/647 (53%), Gaps = 39/647 (6%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           ++++  NAL+  +++ G + + + +F     ++ VS+NT + GF+ +G +     V  +M
Sbjct: 75  KELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 134

Query: 148 --QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
               +  +  + T ++A+  C     L   K++H   +      N  V NA    YAK G
Sbjct: 135 LAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 194

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +  A+ +F  + ++ + SWN +I G+ ++  P+  +D   +M++ GL PD  TV ++L 
Sbjct: 195 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 254

Query: 266 AC-----------------------------------FQTGRIDDAGRLFHVIKEKDNVC 290
           AC                                      G +     LF  +++K  V 
Sbjct: 255 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVS 314

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           W T+I GY QNG  + AL +F +M+   ++    S+  V  +C+ L SL  G+  H  A+
Sbjct: 315 WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYAL 374

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              ++DD  ++ +LIDMY K G    +  VFN +  ++  SWN+MI GY  +G   EA+ 
Sbjct: 375 KHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIK 434

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470
           L++++ +    PD  TF+ VL+AC H+ L   G  + D + +  G+ P+L HYAC+I++L
Sbjct: 435 LFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDML 494

Query: 471 GRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529
           GR+  +DKA+ ++ + +  + +  IW +LLS C +  +++ GE  A  LFELEP     Y
Sbjct: 495 GRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENY 554

Query: 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIY 589
           ++LSN+YA  G+WEDV  +R  M   +++K A  SWIE++ KV  FV  +R     E I 
Sbjct: 555 VLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIK 614

Query: 590 EELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRI 649
              S L  K+ + G+ P+T  V HD  EEEK++ +  HSEKLAL Y LIK   G T IR+
Sbjct: 615 SLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTT-IRV 673

Query: 650 MKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            KN+R+C DCH   K  S ++ R I++RD+ RFHHF  G CSC D W
Sbjct: 674 YKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 197/437 (45%), Gaps = 79/437 (18%)

Query: 45  LQSHMDLNFYEPNTTFLHNRLLH-----FYAKSGKLFYARDLFDKMPLRDIISWNALLSA 99
           L S  +L+ Y     F++N L+       YAK G L YA+ +F  +  + + SWNAL+  
Sbjct: 161 LPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGG 220

Query: 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH 159
           HA+S                                  R +L    +M+     P  +T 
Sbjct: 221 HAQSND-------------------------------PRLSLDAHLQMKISGLLPDSFTV 249

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
            S L+AC++L  LR GK++HG I+   L  ++FV  ++  +Y   GE+   + LFD M +
Sbjct: 250 CSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMED 309

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------------ 267
           ++LVSWN +I+GYL+NG P + + +F++M L G+    +++  + GAC            
Sbjct: 310 KSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA 369

Query: 268 -----------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304
                                   + G I  + ++F+ +KEK    W  MI+GY  +G  
Sbjct: 370 HAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLA 429

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSA 363
           ++A+ LF EM      PD  +   V+++C     ++ G + +       G+  +L   + 
Sbjct: 430 KEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYAC 489

Query: 364 LIDMYCKCGVTDDAWTVF--NMMPTRNVVSWNSMING--YAQNGQDLEALALYDKLLQ-E 418
           +IDM  + G  D A  V    M    +V  W S+++     QN +  E +A   KL + E
Sbjct: 490 VIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVA--AKLFELE 547

Query: 419 NLKPDSFTFVSVLSACL 435
             KP+++  +S L A L
Sbjct: 548 PEKPENYVLLSNLYAGL 564



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 150/315 (47%), Gaps = 46/315 (14%)

Query: 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSED----VRPDKFSISSVVSSCAKLASLYH 341
           ++ V W +MI  ++ NG  E++ +L  EM+ E+      PD  ++ +V+  CA+   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ 401
           G+ VHG AV L +D +L++++AL+DMY KCG   +A  +F M   +NVVSWN+M+ G++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 402 NGQDLEALALYDKLLQ--ENLKPDSFTFVSVLSACLH----------------------- 436
            G       +  ++L   E++K D  T ++ +  C H                       
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 437 --ADLFERGQNHFDSIS----AVHGI-TPSLDHYACMINLLGRSSDVDKAVDL---IKSL 486
             A+ F        S+S      HGI + +++ +  +I    +S+D   ++D    +K  
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 487 PHKPNSLIWSTLLSVCAMKGDIKHGE----MAARHLFELEPINAGPYIMLSNMYAACGRW 542
              P+S    +LLS C+    ++ G+       R+  E +      Y+ + ++Y  CG  
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLF---VYLSVLSLYIHCGEL 297

Query: 543 EDVASIRSSMKSKNV 557
             V ++  +M+ K++
Sbjct: 298 CTVQALFDAMEDKSL 312


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 304/534 (56%), Gaps = 37/534 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L AC    D R   Q H KI+    G    +  +L   YA    +D A  L D       
Sbjct: 66  LEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLD------- 118

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
                                   EM   G   D +T + I+ +  + G  D A R+F  
Sbjct: 119 ------------------------EMPYWGF--DLITANLIIASLMKVGEFDFAKRVFRK 152

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +  +D V W +MI G  +N + E+AL  F EML+ +V PD F+ +SV++ CA+L S +H 
Sbjct: 153 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 212

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           ++VHG  +   +  + ++SSALID+Y KCG  + A  VFN +   +V  WNSMING A +
Sbjct: 213 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 272

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G  L+A+ ++ ++  E++ PDS TF+ +L+AC H  L E+G+ +FD +   + I P L+H
Sbjct: 273 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 332

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y  M++LLGR+  V++A  +IK++P +P+ +IW  LLS C    + K+ E+    + ++ 
Sbjct: 333 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACR---NFKNPELGEVAIAKIS 389

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
            +N+G YI+LSNMY +  +W+    +R  MK   V+K    SW+E+   +H+F + DR+H
Sbjct: 390 HLNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSH 449

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           PET  IY+ L  LI++ +  GF P T LVL D  +EE+ +++  HSEKLALAY ++K   
Sbjct: 450 PETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSP 509

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T IR+ KN+R C DCH +MK  S ++ R II+RD  RFH F GG CSC+D W
Sbjct: 510 G-TEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 562



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 15/353 (4%)

Query: 45  LQSHMDL-NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR--DIISWNALLSAHA 101
            QSH  +  F       L   L+  YA    L  A  L D+MP    D+I+ N ++++  
Sbjct: 79  FQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLM 138

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
           + G     + +F KM  RD V++N+ I G        EAL+ F  M     EP  +T  S
Sbjct: 139 KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFAS 198

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
            +N CA+L      + +HG ++   +  N  + +AL D+Y+K G I+ A+ +F+ + + +
Sbjct: 199 VINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDD 258

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281
           +  WN MI+G   +G     I +F +M++  ++PD +T   IL AC   G ++   R F 
Sbjct: 259 VSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFD 318

Query: 282 VIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
           +++   ++      +  M+    + G  E+A  +   M  E   PD     +++S+C   
Sbjct: 319 LMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPME---PDIVIWRALLSACRNF 375

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            +   G+V   K   L   D +L+S    +MYC     D A  V  MM    V
Sbjct: 376 KNPELGEVAIAKISHLNSGDYILLS----NMYCSLEKWDSAERVREMMKRDGV 424


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/594 (34%), Positives = 339/594 (57%), Gaps = 38/594 (6%)

Query: 139 EALQVFSRMQKD-RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNAL 197
           EAL++F  ++ +  ++    T+ + ++AC  L  +R  K++   ++   L  + ++RN +
Sbjct: 113 EALELFEILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRV 172

Query: 198 TDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--------- 248
             M+ K G +  AR LFD M  +N++SWN +I G +  G   +   LF  M         
Sbjct: 173 LLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGS 232

Query: 249 --------------------QL------LGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
                               QL       G+  D      ++    + G I+DA  +F  
Sbjct: 233 RMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQ 292

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           + EK  V W ++I GY  +G  E+AL ++ EM    V+ D F+ S ++  CA+LASL H 
Sbjct: 293 MPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHA 352

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           +  H   V  G   D++ ++AL+D+Y K G  +DA  VF+MMP +NV+SWN++I GY  +
Sbjct: 353 KQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNH 412

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G+ +EA+ +++++L E + P+  TF++VLSAC ++ L +RG   F+S+S  H I P   H
Sbjct: 413 GRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMH 472

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           YACMI LLGR   +D+A  LIK  P KP   +W+ LL+ C +  + + G+ AA  L+ + 
Sbjct: 473 YACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMG 532

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
           P     Y++L N+Y   GR E+ A++  ++K + ++   A SWIEI  + + F+S D+ H
Sbjct: 533 PEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCH 592

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
            +++ IY++L +L+ ++ + G+ P  K +L D  E+E+ + + YHSEKLA+A+ LI    
Sbjct: 593 AQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEE-RVLLYHSEKLAIAFGLINTSD 651

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             TP++I+++ R+CGDCH  +K  + +  R I++RD++RFHHF  G+CSC D W
Sbjct: 652 W-TPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 219/507 (43%), Gaps = 114/507 (22%)

Query: 24  EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFD 83
           E Y  LV  C  +  +   K++ ++M  +  +P+  +L NR+L  + K G +  AR LFD
Sbjct: 132 ETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDE-YLRNRVLLMHVKCGMMIDARRLFD 190

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           +MP ++I+SW                               NT I G  + G   EA ++
Sbjct: 191 EMPEKNILSW-------------------------------NTIIGGLVDAGDYFEAFRL 219

Query: 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203
           F  M +D  +      V+ + A A L  +  G+Q+H   +   +GG+VFV  AL DMY+K
Sbjct: 220 FLMMWQDFSDAGSRMFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSK 279

Query: 204 GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263
            G I+ A+ +FD+M  +  V WN +I+GY  +G  ++ + ++ EM+  G+  D  T S I
Sbjct: 280 CGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSII 339

Query: 264 LGACFQT-----------------------------------GRIDDAGRLFHVIKEKDN 288
           +  C +                                    GRI+DA  +F ++  K+ 
Sbjct: 340 IRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNV 399

Query: 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGK 348
           + W  +I GY  +G+  +A+ +F  ML E + P+  +  +V+S+C+              
Sbjct: 400 ISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS-------------- 445

Query: 349 AVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS-----WNSMINGYAQNG 403
                                  G++D  W +F  M   + +      +  MI    + G
Sbjct: 446 ---------------------YSGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREG 484

Query: 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDH 462
              EA AL   +     KP    + ++L+AC     FE G+    +   ++G+ P  L +
Sbjct: 485 LLDEAFAL---IKDAPFKPTVNMWAALLTACRVHKNFELGKF---AAEKLYGMGPEKLSN 538

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHK 489
           Y  ++N+  RS  +++A  +I++L  +
Sbjct: 539 YVVLLNIYNRSGRLEEAAAVIQTLKRR 565



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 159/307 (51%), Gaps = 11/307 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+    AL+  +++ GS++D + +FD+MP + +V +N+ IAG+A  G+S EAL ++  M+
Sbjct: 266 DVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMR 325

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +  ++T    +  CA+L  L   KQ H  +V    G ++    AL D+Y+K G I+
Sbjct: 326 DSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIE 385

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            A+ +FD M ++N++SWN +I+GY  +G+  + +++F+ M   G+ P+ VT   +L AC 
Sbjct: 386 DAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACS 445

Query: 269 QTGRIDDAGRLF------HVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
            +G  D    +F      H IK +  + +  MI    + G  ++A  L  +      +P 
Sbjct: 446 YSGLSDRGWEIFESMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIKD---APFKPT 501

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382
               ++++++C    +   G+    K   +G  + L     L+++Y + G  ++A  V  
Sbjct: 502 VNMWAALLTACRVHKNFELGKFAAEKLYGMG-PEKLSNYVVLLNIYNRSGRLEEAAAVIQ 560

Query: 383 MMPTRNV 389
            +  R +
Sbjct: 561 TLKRRGL 567


>gi|225456505|ref|XP_002280974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50990
           [Vitis vinifera]
          Length = 523

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/534 (37%), Positives = 304/534 (56%), Gaps = 37/534 (6%)

Query: 163 LNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL 222
           L AC    D R   Q H KI+    G    +  +L   YA    +D A  L D       
Sbjct: 27  LEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLD------- 79

Query: 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282
                                   EM   G   D +T + I+ +  + G  D A R+F  
Sbjct: 80  ------------------------EMPYWGF--DLITANLIIASLMKVGEFDFAKRVFRK 113

Query: 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG 342
           +  +D V W +MI G  +N + E+AL  F EML+ +V PD F+ +SV++ CA+L S +H 
Sbjct: 114 MLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHA 173

Query: 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN 402
           ++VHG  +   +  + ++SSALID+Y KCG  + A  VFN +   +V  WNSMING A +
Sbjct: 174 ELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIH 233

Query: 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462
           G  L+A+ ++ ++  E++ PDS TF+ +L+AC H  L E+G+ +FD +   + I P L+H
Sbjct: 234 GLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFDLMRRHYSIQPQLEH 293

Query: 463 YACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522
           Y  M++LLGR+  V++A  +IK++P +P+ +IW  LLS C    + K+ E+    + ++ 
Sbjct: 294 YGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSACR---NFKNPELGEVAIAKIS 350

Query: 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTH 582
            +N+G YI+LSNMY +  +W+    +R  MK   V+K    SW+E+   +H+F + DR+H
Sbjct: 351 HLNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSWVELGGVIHQFKAGDRSH 410

Query: 583 PETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPH 642
           PET  IY+ L  LI++ +  GF P T LVL D  +EE+ +++  HSEKLALAY ++K   
Sbjct: 411 PETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLNSHSEKLALAYVILKTSP 470

Query: 643 GVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           G T IR+ KN+R C DCH +MK  S ++ R II+RD  RFH F GG CSC+D W
Sbjct: 471 G-TEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFEGGLCSCRDYW 523



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 15/353 (4%)

Query: 45  LQSHMDL-NFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR--DIISWNALLSAHA 101
            QSH  +  F       L   L+  YA    L  A  L D+MP    D+I+ N ++++  
Sbjct: 40  FQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGFDLITANLIIASLM 99

Query: 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVS 161
           + G     + +F KM  RD V++N+ I G        EAL+ F  M     EP  +T  S
Sbjct: 100 KVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPDGFTFAS 159

Query: 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRN 221
            +N CA+L      + +HG ++   +  N  + +AL D+Y+K G I+ A+ +F+ + + +
Sbjct: 160 VINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFNSIQHDD 219

Query: 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281
           +  WN MI+G   +G     I +F +M++  ++PD +T   IL AC   G ++   R F 
Sbjct: 220 VSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQGRRYFD 279

Query: 282 VIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336
           +++   ++      +  M+    + G  E+A  +   M  E   PD     +++S+C   
Sbjct: 280 LMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPME---PDIVIWRALLSACRNF 336

Query: 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389
            +   G+V   K   L   D +L+S    +MYC     D A  V  MM    V
Sbjct: 337 KNPELGEVAIAKISHLNSGDYILLS----NMYCSLEKWDSAERVREMMKRDGV 385


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/478 (39%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLF 280
           +L+  +  ISG  + G+   C     ++  +G   D +  + +L    + G +++A  LF
Sbjct: 34  SLILRSCAISGEAQLGEAFHC-----QIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLF 88

Query: 281 HVIKEKDN--VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
             + E+++  V W TMI  Y Q G+   A+ +F +M SE+V+P + ++ S++S+CA L +
Sbjct: 89  DNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGA 148

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G+ +HG      +  D+++ +ALIDMYCKCG  + A  VF+ +  +N+  WNS+I G
Sbjct: 149 LDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVG 208

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
              NG+  EA+A +  + +E +KPD  TFV +LS C H+ L   GQ +F  +  V+G+ P
Sbjct: 209 LGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEP 268

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
            ++HY CM++LLGR+  + +A++LI+++P KPNS++  +LL  C +  D K GE   + L
Sbjct: 269 GVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQL 328

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
            EL+P + G Y+ LSN+YA+  RW+DV + R  M  + V K    S IE++N VH+FV+ 
Sbjct: 329 LELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAG 388

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP+   I   L ++ K+L+  G  PNT  VLHD +EEEK  +I YHSE++A+A+ L+
Sbjct: 389 DTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLM 448

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
             P G T IR++KN+R C DCH  MK  S+   R II+RD  RFHHF  G+CSC D W
Sbjct: 449 STPPGKT-IRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 140/272 (51%), Gaps = 13/272 (4%)

Query: 70  AKSGKLFYARDLFDKMPLR-DIISWNALLSAHARSGSVQDLRALFDKMPIRDS--VSYNT 126
           A+ G+ F+ + +  KM    D+I    LL  +A+ G V++ R LFD M  R+S  V++NT
Sbjct: 46  AQLGEAFHCQIM--KMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNT 103

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
            I+ +   G    A+ +F +MQ +  +PT+ T VS L+ACA L  L  G+ IHG I    
Sbjct: 104 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR 163

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
           L  +V + NAL DMY K G ++ A  +F  ++ +N+  WN +I G   NG+ ++ I  F 
Sbjct: 164 LKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFI 223

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI-----KEKDNVCWTTMIVGYTQN 301
            M+  G+ PD VT   IL  C  +G +    R F  +      E     +  M+    + 
Sbjct: 224 VMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRA 283

Query: 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
           G  ++AL L   M    ++P+   + S++ +C
Sbjct: 284 GYLKEALELIRAM---PMKPNSMVLGSLLRAC 312



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 42/302 (13%)

Query: 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR 194
           G   + L  +S M ++   P+  +    L +CA   + + G+  H +I+      ++ ++
Sbjct: 9   GVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQ 68

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNR--NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
             L D YAK G +++AR LFD M  R  N V+WN MIS Y++ G+    I +FQ+MQ   
Sbjct: 69  TGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSEN 128

Query: 253 LNPDEVTVSNILGACFQTGRID-----------------------------------DAG 277
           + P EVT+ ++L AC   G +D                                    A 
Sbjct: 129 VKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAI 188

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
            +FH +  K+  CW ++IVG   NG+ E+A+  F  M  E ++PD  +   ++S C+   
Sbjct: 189 DVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSG 248

Query: 338 SLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMI 396
            L  GQ    + + V G++  +     ++D+  + G   +A  +   MP +     NSM+
Sbjct: 249 LLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKP----NSMV 304

Query: 397 NG 398
            G
Sbjct: 305 LG 306



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 19/243 (7%)

Query: 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353
           MI    ++G   D L  ++ ML  DV P K S S ++ SCA       G+  H + + +G
Sbjct: 1   MIRVSLESGVCPDFLGFYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMG 60

Query: 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR--NVVSWNSMINGYAQNGQDLEALAL 411
            + D+++ + L+D Y K G  ++A  +F+ M  R  N V+WN+MI+ Y Q G+   A+++
Sbjct: 61  FEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISM 120

Query: 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYA--C 465
           + ++  EN+KP   T VS+LSAC H    + G+        +HG   +    +D      
Sbjct: 121 FQQMQSENVKPTEVTMVSLLSACAHLGALDMGE-------WIHGYIRTKRLKIDVVLGNA 173

Query: 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           +I++  +   ++ A+D+   L  K N   W++++    M G    GE A      +E   
Sbjct: 174 LIDMYCKCGALEAAIDVFHGLSRK-NIFCWNSIIVGLGMNG---RGEEAIAAFIVMEKEG 229

Query: 526 AGP 528
             P
Sbjct: 230 IKP 232



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 6/170 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  NAL+  + + G+++    +F  +  ++   +N+ I G    G   EA+  F  M+
Sbjct: 167 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 226

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFVRNALTDMYAKGGEI 207
           K+  +P   T V  L+ C+    L  G++   +++ V  L   V     + D+  + G +
Sbjct: 227 KEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL 286

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLGLNP 255
            +A  L   M  +     ++++   L+  Q  K   L +++  QLL L+P
Sbjct: 287 KEALELIRAMPMK---PNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDP 333


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 325/602 (53%), Gaps = 34/602 (5%)

Query: 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLD--LRRGKQIHGKIVVG 185
           +  +      ++ALQ+F +   +  +    T+V+ L +CA L D  L  GK+IH   +  
Sbjct: 1   MGAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQ 60

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
             G ++ V+N+L  MYAK G    A  +FD+M  +NL+S+  MI  Y    +  +  +L+
Sbjct: 61  GFGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELY 120

Query: 246 QEMQLLGLNPDEVTVSNILGAC-------------------------------FQTGRID 274
           ++M   G+ PD    +  L  C                                + GRI 
Sbjct: 121 KKMLSEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIA 180

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
            A  +F  I+ KD   +  MI  + +      A+ L+ EM   ++ P+ ++ +SV+ +C+
Sbjct: 181 SAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACS 240

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
           KL +L  G+ +H K        D+  ++AL++MY KCG   +A  VFN    +NV +W S
Sbjct: 241 KLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTS 300

Query: 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454
           +++ Y+Q GQ    L  Y ++  E + PD  TF ++ +AC H+ L + G  +F ++   H
Sbjct: 301 LMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDH 360

Query: 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514
            I P   HY CMI+LLGR   + +A +L++++P+ P+ + W+ LLS C + GD+K G  A
Sbjct: 361 WIVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARA 420

Query: 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
            + + EL P ++GPY+++ NMYA  G+W DVA ++  +K + + K    S IE   ++H+
Sbjct: 421 YKRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHE 480

Query: 575 FVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALA 634
           FV  D  HP  + I   L ++ ++L  AG+ P+TK VL D  EE K + + +HSE++AL 
Sbjct: 481 FVCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALG 540

Query: 635 YCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694
             L+    G T + I+KN+R+C DCH F K  S ++ R +++RDS+RFH F  G+CSC D
Sbjct: 541 LGLLTSDAGAT-LHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGD 599

Query: 695 NW 696
            W
Sbjct: 600 YW 601



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 15/311 (4%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R  +  NAL+  + R G +   + +FD +  +D  SYN  IA FA      +A+ ++  M
Sbjct: 161 RTPVCSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEM 220

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +    EP  +T+ S L+AC++L  L  GK+IH K+  G+   +V    AL +MYAK G  
Sbjct: 221 EGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSA 280

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            +AR +F+    +N+ +W  ++S Y + GQ +  ++ +Q M   G+ PD+VT + I  AC
Sbjct: 281 HEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNAC 340

Query: 268 FQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322
             +G  D+    F  ++E   +      +T MI    + G+  +A  L   M      PD
Sbjct: 341 SHSGLPDEGLLYFRAMREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTM---PYSPD 397

Query: 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD---LLVSSALIDMYCKCGVTDDAWT 379
             + + ++S+C     L  G   + +   L   D    LL+     +MY K G   D   
Sbjct: 398 VVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLLMG----NMYAKAGKWADVAE 453

Query: 380 VFNMMPTRNVV 390
           V  M+  R + 
Sbjct: 454 VKKMIKQRGLA 464



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 196/410 (47%), Gaps = 29/410 (7%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D++  N+L+  +A+ GS +    +FDKM  ++ +SY + I  + +     EA +++ +M 
Sbjct: 65  DLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKML 124

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV-RNALTDMYAKGGEI 207
            +   P  Y + +AL  C     +R G+ IH K+  GN      V  NAL  MY + G I
Sbjct: 125 SEGIMPDIYAYAAALAVCPT---IREGEAIHVKL--GNHERRTPVCSNALVGMYGRFGRI 179

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             A+W+FD +  ++L S+N MI+ + K     K I L+ EM+   L P+  T +++L AC
Sbjct: 180 ASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDAC 239

Query: 268 FQTGRIDDAGRLFHVIKEKD---NVCWTTMIVG-YTQNGKEEDALILFNEMLSEDVRPDK 323
            + G + +   +   +K  D   +V + T +V  Y + G   +A  +FN+   ++V    
Sbjct: 240 SKLGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNV---- 295

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383
           F+ +S++S+ ++     +    + +    GV  D +  +A+ +     G+ D+    F  
Sbjct: 296 FTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRA 355

Query: 384 MPTRNVV-----SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHA 437
           M   + +      +  MI+   + G+  EA  L   +      PD  T+  +LSAC ++ 
Sbjct: 356 MREDHWIVPLQPHYTCMIDLLGRVGRLREAEELVRTM---PYSPDVVTWTILLSACKVYG 412

Query: 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLL---GRSSDVDKAVDLIK 484
           DL + G   +  I+ ++   P    Y  M N+    G+ +DV +   +IK
Sbjct: 413 DL-KIGARAYKRITELN--PPDSGPYLLMGNMYAKAGKWADVAEVKKMIK 459



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM 85
           YT ++  C+++  +   K +   +     +P     +  L++ YAK G    AR +F+  
Sbjct: 232 YTSVLDACSKLGALTEGKEIHKKVK-GGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDC 290

Query: 86  PLRDIISWNALLSAHARSGSVQDLRALFDKM----PIRDSVSYNTAIAGFANKGFSREAL 141
            L+++ +W +L+SA+++ G  Q     + +M     I D V++       ++ G   E L
Sbjct: 291 GLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGL 350

Query: 142 QVFSRMQKDRF 152
             F  M++D +
Sbjct: 351 LYFRAMREDHW 361


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/543 (36%), Positives = 307/543 (56%), Gaps = 37/543 (6%)

Query: 190 NVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQ 249
           N    N L + Y + G++  AR +FD M +R L +WN MI+G ++    ++ + LF+EM 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 250 LLGLNPDEVTVSNILGAC-----------------------------------FQTGRID 274
            LG +PDE T+ ++                                        + G++ 
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 275 DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCA 334
           D   +   +  ++ V W T+I+G  QNG  E  L L+  M     RP+K +  +V+SSC+
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS 394
            LA    GQ +H +A+ +G    + V S+LI MY KCG   DA   F+     + V W+S
Sbjct: 204 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 263

Query: 395 MINGYAQNGQDLEALALYDKLL-QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453
           MI+ Y  +GQ  EA+ L++ +  Q  ++ +   F+++L AC H+ L ++G   FD +   
Sbjct: 264 MISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEM 513
           +G  P L HY C+++LLGR+  +D+A  +IKS+P KP+ +IW TLLS C +  + +  + 
Sbjct: 324 YGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQK 383

Query: 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVH 573
             + + E++P ++  Y++L+N++A+  RW DV+ +R SM+ KNVKK A  SW E   +VH
Sbjct: 384 VFKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVH 443

Query: 574 KFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLAL 633
           +F   DR+  +++ IY  L +L  +++  G+ P+T  VLHD  EEEK   +  HSEKLA+
Sbjct: 444 QFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAV 503

Query: 634 AYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCK 693
           A+ L+  P G  PIRI+KN+RVC DCH+  K+ S I+ R I LRD +RFHHF+ G CSC 
Sbjct: 504 AFALMILPEG-APIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCG 562

Query: 694 DNW 696
           D W
Sbjct: 563 DYW 565



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 176/371 (47%), Gaps = 38/371 (10%)

Query: 66  LHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYN 125
           +  Y+K G L  A  L+++M  ++ +S N L++ + R+G +   R +FD+MP R   ++N
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG 185
             IAG     ++ E L +F  M    F P +YT  S  +  A L  +  G+QIHG  +  
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKY 120

Query: 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLF 245
            L  ++ V ++L  MY + G++     +   M  RNLV+WN +I G  +NG P+  + L+
Sbjct: 121 GLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLY 180

Query: 246 QEMQLLGLNPDEVTVSNILGAC-----------------------------------FQT 270
           + M++ G  P+++T   +L +C                                    + 
Sbjct: 181 KMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKC 240

Query: 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSV 329
           G + DA + F   +++D V W++MI  Y  +G+ ++A+ LFN M  + ++  ++ +  ++
Sbjct: 241 GCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNL 300

Query: 330 VSSCAKLASLYHGQVVHGKAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR- 387
           + +C+       G  +    V   G    L   + ++D+  + G  D A  +   MP + 
Sbjct: 301 LYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKP 360

Query: 388 NVVSWNSMING 398
           + V W ++++ 
Sbjct: 361 DPVIWKTLLSA 371



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 32/227 (14%)

Query: 61  LHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRD 120
           +++ L H Y ++GKL     +   MP+R++++WN L+  +A++G  + +  L+  M I  
Sbjct: 128 VNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISG 187

Query: 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHG 180
                                            P   T V+ L++C+ L    +G+QIH 
Sbjct: 188 C-------------------------------RPNKITFVTVLSSCSDLAIRGQGQQIHA 216

Query: 181 KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240
           + +       V V ++L  MY+K G +  A   F    + + V W+ MIS Y  +GQ  +
Sbjct: 217 EAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDE 276

Query: 241 CIDLFQEM-QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286
            I LF  M +   +  +EV   N+L AC  +G  D    LF ++ EK
Sbjct: 277 AIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/591 (34%), Positives = 326/591 (55%), Gaps = 52/591 (8%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N+   +  LLH YA    L           +  +   +ALL  + ++G + + R +F +M
Sbjct: 129 NSDVNYGELLHGYAVKTGL-----------VNSVFVGSALLDMYTKNGKIFEGRRVFHEM 177

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
           P+R+ VS+   I G    G+++EAL  FS M + R E   YT   AL ACA    L  G+
Sbjct: 178 PMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGR 237

Query: 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG 236
           +IH + +      + FV N L  MY K G+++    LF++M+ R++VSW  +I+  ++ G
Sbjct: 238 EIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMG 297

Query: 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRID---------------------- 274
           Q +  +  F  M+   ++P+E T + ++  C    RI+                      
Sbjct: 298 QEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVEN 357

Query: 275 -------------DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321
                         +  +FH +  +D V W+T+I GY Q G   +A  L + M  E  +P
Sbjct: 358 SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKP 417

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
            +F+++SV+S+C  +A L HG+ +H   + +G++   +V SALI+MYCKCG  ++A  +F
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
           +     ++VSW +MINGYA++G   E + L++K+ +  L+PDS TF+ VLSAC HA L +
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVD 537

Query: 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV 501
            G ++F+++S  + I+PS +HY CMI+LL R+  +  A  +I+++P   + ++WSTLL  
Sbjct: 538 LGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRA 597

Query: 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFA 561
           C + GD++ G   A  + +LEP  AG +I L+N+YA+ G+W + A IR  MKSK V K  
Sbjct: 598 CRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEP 657

Query: 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK------LQEAGFSP 606
            +SWI++ + V  FV+ DR+HP+ E IY  L  L  +      +QE GF P
Sbjct: 658 GWSWIKVKDLVFAFVAGDRSHPQGEDIYNMLDLLASRTELADCVQETGFLP 708



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 152/561 (27%), Positives = 248/561 (44%), Gaps = 110/561 (19%)

Query: 26  YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL--HNRLLHFYAKSGKLFYARDLFD 83
           +T   +  T   D+++ +R   ++  N +  + T L   N+ L    K+G L  AR +FD
Sbjct: 14  FTAPAVASTECIDLQVLERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFD 73

Query: 84  KMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV 143
           KM  +D ISW  L+S                               G+ N   S EAL +
Sbjct: 74  KMSQKDEISWTTLIS-------------------------------GYVNANDSSEALLL 102

Query: 144 FSRMQKD---RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           F  M+ +   R +P  +    A  AC    D+  G+ +HG  V   L  +VFV +AL DM
Sbjct: 103 FKNMRVESGLRIDP--FILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDM 160

Query: 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV 260
           Y K G+I + R +F  M  RN+VSW  +I+G ++ G  K+ +  F EM    +  D  T 
Sbjct: 161 YTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTF 220

Query: 261 SNILGACFQTGRIDDAGR------------------------------------LFHVIK 284
           +  L AC  +G + + GR                                    LF  + 
Sbjct: 221 AIALKACADSGAL-NYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMS 279

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344
            +D V WTT+I    Q G+EE A+  F  M   DV P++++ ++V+S CA LA +  G+ 
Sbjct: 280 MRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQ 339

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H   + LG+   L V ++++ MY KCG    +  +F+ M  R++VSW+++I GY Q G 
Sbjct: 340 LHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGH 399

Query: 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464
             EA  L   +  E  KP  F   SVLSAC +  + E G+     + ++ G+  +    +
Sbjct: 400 VSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSI-GLEHTAMVLS 458

Query: 465 CMINLLGRSSDVDKA-------------------------------VDLIKSLPH---KP 490
            +IN+  +   +++A                               +DL + +P    +P
Sbjct: 459 ALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRP 518

Query: 491 NSLIWSTLLSVCAMKGDIKHG 511
           +S+ +  +LS C+  G +  G
Sbjct: 519 DSVTFIGVLSACSHAGLVDLG 539


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/551 (34%), Positives = 308/551 (55%), Gaps = 35/551 (6%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N L+  + +   +   R LFD M  R+ VS+ T I+G+    F+ EA+ +F  M +  ++
Sbjct: 260 NVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQ 319

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   S LN+C  L  + +G+QIH  ++  +L  + +V+NAL DMYAK   + +AR +
Sbjct: 320 PDGFACTSILNSCGSLAAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAV 379

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC------ 267
           FD +   + +S+N MI GY KN    + +++FQ M+   L P  +T  ++LG        
Sbjct: 380 FDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAI 439

Query: 268 ----------FQTGR-------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
                      ++G                    ++DA  +F+++  KD V W +MI G+
Sbjct: 440 ELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGH 499

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
            QN + E+A+ LFN++L   + P++F+  ++V+  + LAS++HGQ  H   +  GVD+D 
Sbjct: 500 AQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDP 559

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            VS+ALIDMY KCG   +   +F      +V+ WNSMI  YAQ+G   EAL ++  + + 
Sbjct: 560 HVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEA 619

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            ++P+  TFV VLSAC HA     G NHF+S+ + + I P ++HYA ++NL GRS  +  
Sbjct: 620 EVEPNYVTFVGVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHA 679

Query: 479 AVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538
           A + I+ +P KP + +W +LLS C + G+ + G  AA      +P ++GPY++LSN+YA+
Sbjct: 680 AKEFIERMPIKPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYAS 739

Query: 539 CGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKK 598
            G W DV ++R  M S    K    SWIE+  +VH F+   R HPE E+IY  L +L   
Sbjct: 740 KGLWADVHNLRQQMDSSGTVKETGCSWIEVTKEVHTFIVRGREHPEAELIYSVLDELTSL 799

Query: 599 LQEAGFSPNTK 609
           ++  G+ P+T 
Sbjct: 800 IKNLGYVPDTS 810



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 143/485 (29%), Positives = 237/485 (48%), Gaps = 45/485 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            AL++ +A+ G + +   +F  +P+R  V++NT I G+A  G    AL++F RM  +   
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P  +   SA++AC+ L  L  G+QIHG         +  V N L D+Y K   +  AR L
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKL 278

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-----F 268
           FD M  RNLVSW  MISGY++N    + I +F  M   G  PD    ++IL +C      
Sbjct: 279 FDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAI 338

Query: 269 QTGR------------------------------IDDAGRLFHVIKEKDNVCWTTMIVGY 298
             GR                              + +A  +F  + E D + +  MI GY
Sbjct: 339 WQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGY 398

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
           ++N    +A+ +F  M    +RP   +  S++   +   ++   + +HG  +  G   DL
Sbjct: 399 SKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDL 458

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
             +SALID+Y KC + +DA TVFNM+  +++V WNSMI G+AQN Q  EA+ L+++LL  
Sbjct: 459 YAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLS 518

Query: 419 NLKPDSFTFVSVLS-ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
            + P+ FTFV++++ A   A +F   Q H   I A     P + +   +I++  +   + 
Sbjct: 519 GMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSN--ALIDMYAKCGFIK 576

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL--FELEPINAGPYIMLSNM 535
           +   L +S   + + + W+++++  A  G  +      R +   E+EP     Y+    +
Sbjct: 577 EGRMLFESTCGE-DVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEP----NYVTFVGV 631

Query: 536 YAACG 540
            +AC 
Sbjct: 632 LSACA 636



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 136/455 (29%), Positives = 230/455 (50%), Gaps = 50/455 (10%)

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
           L D+   N LL  ++  G ++D R LFD+MP R+ VS+ + I+ +   G    A+ +F  
Sbjct: 50  LDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVA 109

Query: 147 MQKDRFE-PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205
            QK   E P ++   S L AC Q   +  G+Q+HG  V  +L  NV+V  AL ++YAK G
Sbjct: 110 FQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLG 169

Query: 206 EIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265
            +D+A  +F  +  R  V+WN +I+GY + G     ++LF  M + G+ PD   +++ + 
Sbjct: 170 CMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVS 229

Query: 266 ACFQTG-----------------------------------RIDDAGRLFHVIKEKDNVC 290
           AC   G                                   R+  A +LF  ++ ++ V 
Sbjct: 230 ACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVS 289

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350
           WTTMI GY QN    +A+ +F  M     +PD F+ +S+++SC  LA+++ G+ +H   +
Sbjct: 290 WTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVI 349

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
              ++ D  V +ALIDMY KC    +A  VF+ +   + +S+N+MI GY++N    EA+ 
Sbjct: 350 KADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVN 409

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT----PSLDHYA-- 464
           ++ ++   +L+P   TFVS+L            Q   +    +HG+      SLD YA  
Sbjct: 410 IFQRMRFFSLRPSLLTFVSLLGV-------SSSQLAIELSKQIHGLIIKSGTSLDLYAAS 462

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            +I++  + S V+ A  +   L H  + +IW++++
Sbjct: 463 ALIDVYSKCSLVNDAKTVFNML-HYKDMVIWNSMI 496



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 150/298 (50%), Gaps = 36/298 (12%)

Query: 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGY 232
           R    IH +  V     ++F+ N L   Y+  G +  AR LFDRM +RNLVSW  +IS Y
Sbjct: 35  RLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMY 94

Query: 233 LKNGQPKKCIDLFQEMQLLGLN-PDEVTVSNILGACFQT--------------------- 270
            ++G+    I LF   Q      P+E  ++++L AC Q+                     
Sbjct: 95  TQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDAN 154

Query: 271 --------------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316
                         G +D+A  +FH +  +  V W T+I GY Q G    AL LF+ M  
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 317 EDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376
           E VRPD+F ++S VS+C+ L  L  G+ +HG A     + D  V + LID+YCKC     
Sbjct: 215 EGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSA 274

Query: 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434
           A  +F+ M  RN+VSW +MI+GY QN  + EA+ ++  + Q   +PD F   S+L++C
Sbjct: 275 ARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSC 332



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 141/249 (56%), Gaps = 8/249 (3%)

Query: 256 DEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEM 314
           D++ ++N+L   +   GR+ DA  LF  +  ++ V W ++I  YTQ+G+++ A+ LF   
Sbjct: 51  DDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAF 110

Query: 315 LSEDVR-PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
                  P++F ++SV+ +C +  ++  G+ VHG AV L +D ++ V +ALI++Y K G 
Sbjct: 111 QKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGC 170

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            D+A  VF+ +P R  V+WN++I GYAQ G    AL L+D++  E ++PD F   S +SA
Sbjct: 171 MDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSA 230

Query: 434 CLHADLFERGQ--NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491
           C      E G+  + +   SA    T  ++    +I+L  + S +  A  L   + ++ N
Sbjct: 231 CSALGFLEGGRQIHGYAYRSATETDTSVIN---VLIDLYCKCSRLSAARKLFDCMEYR-N 286

Query: 492 SLIWSTLLS 500
            + W+T++S
Sbjct: 287 LVSWTTMIS 295



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 126/250 (50%), Gaps = 8/250 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+ + +AL+  +++   V D + +F+ +  +D V +N+ I G A      EA+++F+++ 
Sbjct: 457 DLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLL 516

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
                P ++T V+ +   + L  +  G+Q H  I+   +  +  V NAL DMYAK G I 
Sbjct: 517 LSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIK 576

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
           + R LF+     +++ WN MI+ Y ++G  ++ + +F+ M    + P+ VT   +L AC 
Sbjct: 577 EGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACA 636

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G + +    F+ +K   ++      + +++  + ++GK   A      M    ++P  
Sbjct: 637 HAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERM---PIKPAA 693

Query: 324 FSISSVVSSC 333
               S++S+C
Sbjct: 694 AVWRSLLSAC 703



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 15/169 (8%)

Query: 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQ 404
           +H +A V G  DDL +++ L+  Y   G   DA  +F+ MP RN+VSW S+I+ Y Q+G+
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 405 DLEALALYDKLLQENLK-PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY 463
           D  A++L+    + + + P+ F   SVL AC  +     G+        VHGI   LD  
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQ-------VHGIAVKLDLD 152

Query: 464 A------CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           A       +INL  +   +D+A+ +  +LP +   + W+T+++  A  G
Sbjct: 153 ANVYVGTALINLYAKLGCMDEAMLVFHALPVR-TPVTWNTVITGYAQIG 200



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 34/163 (20%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           N   + N L+  YAK G +   R LF+     D+I WN++++                  
Sbjct: 557 NDPHVSNALIDMYAKCGFIKEGRMLFESTCGEDVICWNSMITT----------------- 599

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176
                         +A  G + EALQVF  M +   EP   T V  L+ACA    +  G 
Sbjct: 600 --------------YAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACAHAGFVGEGL 645

Query: 177 QIHGKIVVGNLGGNVFVRN--ALTDMYAKGGEIDKARWLFDRM 217
             H   +  N      + +  ++ +++ + G++  A+   +RM
Sbjct: 646 N-HFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERM 687


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/701 (31%), Positives = 360/701 (51%), Gaps = 90/701 (12%)

Query: 82  FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSRE-A 140
           F K  L+ + S N LL+ + +S ++     LFD++  +++ ++   I+GFA    S E  
Sbjct: 59  FKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELV 118

Query: 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
             +F  MQ D   P  YT  S L  C++  +++ GK IH  I+   +GG+V + N++ D+
Sbjct: 119 FSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDL 178

Query: 201 YAK-------------------------------GGEIDKARWLFDRMNNRNLVSWNLMI 229
           Y K                                G+++K+  +F    N+++VSWN +I
Sbjct: 179 YLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTII 238

Query: 230 SGYLKNGQPKKCID-----------------------------------LFQEMQLLGLN 254
            G ++ G  +  ++                                   L   +   GLN
Sbjct: 239 DGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLN 298

Query: 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDN------------VCWTTMIVGY 298
            D    S+++    + GR+D A  +   +      K N            V W++M+ GY
Sbjct: 299 SDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGY 358

Query: 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358
             NGK ED +  F  M+ E +  D  ++++++S+CA    L  G+ +H     +G+  D 
Sbjct: 359 VWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDA 418

Query: 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418
            V S+LIDMY K G  DDA  +F  +   NVV W SMI+G A +GQ  EA++L++ +L  
Sbjct: 419 YVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNL 478

Query: 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478
            + P+  TFV VL+AC H  L E G  +F  +   + I P ++HY  M+NL GR+  + +
Sbjct: 479 GIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIE 538

Query: 479 AVDLI--KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536
           A + I   S+ H  +  +W + LS C +  +   G+  +  L +  P +   YI+LSNM 
Sbjct: 539 AKNFIFENSISHFTS--VWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMC 596

Query: 537 AACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLI 596
           ++  +W++ A +RS M  + VKK    SW+++ +++H F   DR+HP+ + IY  L  LI
Sbjct: 597 SSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLI 656

Query: 597 KKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRV 655
            +L+E G+S + KLV+ D +EE+    I +HSEKLAL + +I   P   TPIRIMKN+R+
Sbjct: 657 GRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPR--TPIRIMKNLRI 714

Query: 656 CGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           C DCH F K+AS ++ R II+RD++RFHHF   +CSC + W
Sbjct: 715 CNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 149/303 (49%), Gaps = 24/303 (7%)

Query: 8   RQAIDTLY---SRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           R A++ LY   + G   +   ++  ++  + ++ VE+ ++L   + L F   +  ++ + 
Sbjct: 248 RLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRV-LTFGLNSDGYIRSS 306

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  Y K G++  A  +   +PL  +           R G+      +  K P    VS+
Sbjct: 307 LVEMYGKCGRMDKASTILKDVPLNFL-----------RKGNF----GVTCKEPKARMVSW 351

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
           ++ ++G+   G   + ++ F  M  +       T  + ++ACA    L  GKQIH  I  
Sbjct: 352 SSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQK 411

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  + +V ++L DMY+K G +D A  +F+++   N+V W  MISG   +GQ K+ I L
Sbjct: 412 IGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISL 471

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYT 299
           F+ M  LG+ P+EVT   +L AC   G I++  R F ++K+  ++      +T+M+  Y 
Sbjct: 472 FEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYG 531

Query: 300 QNG 302
           + G
Sbjct: 532 RAG 534



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 42/208 (20%)

Query: 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR 387
           S + S   + S    + +HG     G    L  ++ L+ +Y K    D A  +F+ +  +
Sbjct: 37  SFLHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHK 96

Query: 388 NVVSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPDSFTFVSVLSAC-----------L 435
           N  +W  +I+G+A+     E   +L+ ++  +   P+ +T  SVL  C           +
Sbjct: 97  NTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGI 156

Query: 436 HA------------------DL------FERGQNHFDSISAVHGITPSLDHYACMINLLG 471
           HA                  DL      FE  ++ F+ +     I   +  +  MI    
Sbjct: 157 HAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELM-----IEKDVVSWNIMIGAYL 211

Query: 472 RSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
           R  DV+K++++ ++ P+K + + W+T++
Sbjct: 212 REGDVEKSLEMFRNFPNK-DVVSWNTII 238


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/639 (35%), Positives = 341/639 (53%), Gaps = 37/639 (5%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           NAL++ ++ +G + D   LF  M  RD +S+NT I+ +   G + +AL+   ++      
Sbjct: 286 NALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEG 345

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
           P   T  SAL AC+    L  G+ +H   +  +L  N+ V N+L  MY K   I+ A  +
Sbjct: 346 PDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERI 405

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-------- 265
           F  M N ++VS N++I  Y       K + +F  M+   +  + +T+ NILG        
Sbjct: 406 FQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDL 465

Query: 266 -------------ACF---------------QTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                        A F               + G ++ +  +F  I  +  V W  MI  
Sbjct: 466 RNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAA 525

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
             Q+G  E++L LF +M  +    D   ++  +SS A LASL  G  +HG  +  G+ +D
Sbjct: 526 NVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGND 585

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
             V +A +DMY KCG  D+   +      R    WN++I+GYA+ G   EA   +  ++ 
Sbjct: 586 SHVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMIS 645

Query: 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477
               PD  TFV++LSAC HA L ++G ++++S+S+V G++P + H  C++++LGR     
Sbjct: 646 VGRTPDYVTFVTLLSACSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFA 705

Query: 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537
           +A   I+ +P  PN LIW +LLS      ++  G  AA+ L EL+P +   Y++LSN+YA
Sbjct: 706 EAEKFIEDMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYA 765

Query: 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIK 597
              RW DV  +RS MK+ N+ K  A SW++   +V  F   D +H   + IY +L +++ 
Sbjct: 766 TSARWSDVDRVRSHMKTINLNKIPACSWLKQKKEVSTFGIGDHSHKHADKIYMKLDEILL 825

Query: 598 KLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCG 657
           KL+E G+  +T   LHDT EE+K +++  HSEKLALAY LI  P G T +RI KN+RVC 
Sbjct: 826 KLREVGYVADTSSALHDTDEEQKEQNLWNHSEKLALAYGLITVPEGCT-VRIFKNLRVCA 884

Query: 658 DCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
           DCHL  K  S +  R I+LRD  RFHHF GG+CSC D W
Sbjct: 885 DCHLVFKLVSMVFDREIVLRDPYRFHHFKGGSCSCSDFW 923



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 36/376 (9%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
            ALL  +     V D + LF +MP R+ VS+   +   ++ G   EAL  + RM+++R  
Sbjct: 83  TALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRMRRERIA 142

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
                  + ++ C  L D   G Q+   ++V  L   V V N+L  M    G +  A  L
Sbjct: 143 CNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRVHDAEKL 202

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL-NPDEVTVSNILGACFQT-- 270
           F RM  R+ VSWN ++S Y   G   K   +F +M+  GL   D  T+ +++  C  +  
Sbjct: 203 FYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISVCASSDY 262

Query: 271 ---------------------------------GRIDDAGRLFHVIKEKDNVCWTTMIVG 297
                                            G++ DA  LF  +  +D + W TMI  
Sbjct: 263 VSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLISWNTMISS 322

Query: 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD 357
           Y QNG   DAL    ++L  +  PD+ + SS + +C+   +L  G++VH   + L +  +
Sbjct: 323 YVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTLQLSLHHN 382

Query: 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417
           LLV ++LI MY KC   +DA  +F +MP  +VVS N +I  YA      +A+ ++  + +
Sbjct: 383 LLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMRR 442

Query: 418 ENLKPDSFTFVSVLSA 433
             +K +  T V++L +
Sbjct: 443 GEVKLNYITIVNILGS 458



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 127/495 (25%), Positives = 216/495 (43%), Gaps = 53/495 (10%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           R +   N+L+S     G V D   LF +M  RD+VS+N  ++ ++++G   ++ +VFS M
Sbjct: 178 RQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDM 237

Query: 148 QKDRFEPTDYTHVSAL-NACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206
           ++      D T + +L + CA    +  G  +H   +   L   + V NAL +MY+  G+
Sbjct: 238 RRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGK 297

Query: 207 IDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA 266
           +  A +LF  M+ R+L+SWN MIS Y++NG     +    ++      PD +T S+ LGA
Sbjct: 298 LADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGA 357

Query: 267 CFQTG-----------------------------------RIDDAGRLFHVIKEKDNVCW 291
           C   G                                    I+DA R+F ++   D V  
Sbjct: 358 CSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSC 417

Query: 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY-HGQVVHGKAV 350
             +I  Y        A+ +F  M   +V+ +  +I +++ S      L  +G  +H   +
Sbjct: 418 NILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTI 477

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALA 410
             G   D  VS++LI MY KCG  + +  VF  +  R+VVSWN+MI    Q+G   E+L 
Sbjct: 478 HAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLK 537

Query: 411 LYDKLLQENLKPDSFTFVSVLSACLHADLFERG-QNHFDSISA-----VHGITPSLDHYA 464
           L+  +  +    D       +S+       E G Q H   +        H +  ++D Y 
Sbjct: 538 LFMDMRHDGNGLDHICLAECMSSSASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMY- 596

Query: 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524
                 G+   +D+ + ++     +P    W+TL+S  A  G  K  E   +H+  +   
Sbjct: 597 ------GKCGKMDEMLKMLPDPAIRPQQ-CWNTLISGYARYGYFKEAEETFKHMISVG-- 647

Query: 525 NAGPYIMLSNMYAAC 539
               Y+    + +AC
Sbjct: 648 RTPDYVTFVTLLSAC 662



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 183/412 (44%), Gaps = 50/412 (12%)

Query: 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRR-GKQ 177
           R   S+ TAI+G    G    A  +   M++     + +   S + AC +  + R  G  
Sbjct: 6   RTPSSWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAA 65

Query: 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237
           IH       L  NV++  AL  +Y     +  A+ LF  M  RN+VSW  ++     NG 
Sbjct: 66  IHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGH 125

Query: 238 PKKCIDLFQEMQ----------------LLGLNPDEV----TVSNILGACFQT------- 270
            ++ +  ++ M+                L G   DEV      S+++ +  Q        
Sbjct: 126 LEEALGYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANS 185

Query: 271 --------GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRP 321
                   GR+ DA +LF+ ++E+D V W  ++  Y+  G    +  +F++M     +R 
Sbjct: 186 LISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRH 245

Query: 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381
           D  ++ S++S CA    + +G  VH   +  G+   + V +AL++MY   G   DA  +F
Sbjct: 246 DATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAGKLADAEFLF 305

Query: 382 NMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441
             M  R+++SWN+MI+ Y QNG +++AL    +LL  N  PD  TF S L AC       
Sbjct: 306 WNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALM 365

Query: 442 RGQNHFDSISAVHGITPSLDHY------ACMINLLGRSSDVDKAVDLIKSLP 487
            G+        VH +T  L  +        +I + G+ + ++ A  + + +P
Sbjct: 366 DGR-------MVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMP 410



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 156/347 (44%), Gaps = 38/347 (10%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           +++  N+L++ + +  S++D   +F  MP  D VS N  I  +A      +A+QVF  M+
Sbjct: 382 NLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAMQVFFWMR 441

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRR-GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +   +    T V+ L +     DLR  G  +H   +      + +V N+L  MYAK G++
Sbjct: 442 RGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLITMYAKCGDL 501

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE-------------------- 247
           + +  +F R+ NR++VSWN MI+  +++G  ++ + LF +                    
Sbjct: 502 ESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHICLAECMSSS 561

Query: 248 ---------MQL------LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT 292
                    MQL       GL  D   V+  +    + G++D+  ++      +   CW 
Sbjct: 562 ASLASLEEGMQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMDEMLKMLPDPAIRPQQCWN 621

Query: 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVV 351
           T+I GY + G  ++A   F  M+S    PD  +  +++S+C+    +  G    +  + V
Sbjct: 622 TLISGYARYGYFKEAEETFKHMISVGRTPDYVTFVTLLSACSHAGLVDKGIDYYNSMSSV 681

Query: 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMIN 397
            GV   +     ++D+  + G   +A      MP   N + W S+++
Sbjct: 682 FGVSPGIKHCVCIVDILGRLGRFAEAEKFIEDMPVLPNDLIWRSLLS 728



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA-SLYHGQVVHGKA 349
           W T I G  + G++  A  +   M    V    F+++S+V++C +       G  +H   
Sbjct: 11  WYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACERWEEGRACGAAIHALT 70

Query: 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL 409
              G+  ++ + +AL+ +Y       DA  +F  MP RNVVSW +++   + NG   EAL
Sbjct: 71  QKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEAL 130

Query: 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469
             Y ++ +E +  ++  F +V+S C   +    G   F  +  V G+   +     +I++
Sbjct: 131 GYYRRMRRERIACNANAFATVVSLCGSLEDEVAGLQVFSHV-IVSGLQRQVSVANSLISM 189

Query: 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506
           LG    V  A  L   +  + +++ W+ L+S+ + +G
Sbjct: 190 LGNLGRVHDAEKLFYRMEER-DTVSWNALVSMYSHEG 225


>gi|41469322|gb|AAS07178.1| putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
 gi|108709518|gb|ABF97313.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 654

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 306/566 (54%), Gaps = 45/566 (7%)

Query: 175 GKQIHGKIVV-GNLGGN--VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           G Q+H + VV G LGG+    +  A+   YA   E D AR +FD M  RN V+WN +I G
Sbjct: 90  GAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKG 149

Query: 232 YLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTG------------------ 271
           Y + G+ ++ I LF++M+  G  + PD  T   +L    + G                  
Sbjct: 150 YAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIK 209

Query: 272 ---------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                 ++DA   F  +   D + W++MI  Y    +EE AL++
Sbjct: 210 AGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLI 269

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  ML +D++P +F  S+V S C ++  L  G+ VH  ++    + D  + +AL+ MY  
Sbjct: 270 FFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSD 329

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  +DA  VF+     NV+S+NSMI+   Q+G   EAL  + ++    L PD  T +++
Sbjct: 330 CGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNL 389

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +S+  HA L   G   F+S+  + GI P   HYAC++++L RS ++ KA+  I  +P + 
Sbjct: 390 ISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEA 449

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            + +W  +L  C+   DI+ G+  A  LFE+EP  A  YI+L N+YA  GRW +   +RS
Sbjct: 450 EAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRS 509

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M  + V K  A+SWIE+  + ++F  +DR+HP +  IY  L +LI  ++ AG+ P+   
Sbjct: 510 LMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVPDISF 569

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
             H+ Q + K +S+ YH EKLA A+  +  P G T +RIMKN+RVCGDCH   K+ S + 
Sbjct: 570 AAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGT-LRIMKNLRVCGDCHCAYKYFSLVT 628

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR IILRD+ RFHHF  G CSC D W
Sbjct: 629 GREIILRDNQRFHHFNSGFCSCGDYW 654



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD     +L+S +A   +++D +  FD++   D + +++ I+ + N      AL +F  M
Sbjct: 214 RDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNM 273

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT + + +  + C ++  L  GKQ+H   +  N   +  + NAL  MY+  G I
Sbjct: 274 LCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCI 333

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A+ +F   +  N++S+N MIS   ++G PK+ ++ F++M+  GL PDEVT+ N++ + 
Sbjct: 334 NDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSF 393

Query: 268 FQTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
              G + +  ++F+ + + + +        C   M+    + GK   A+   NEM  E  
Sbjct: 394 NHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGK---AMKTINEMPFEAE 450

Query: 320 RP 321
            P
Sbjct: 451 AP 452



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 50/297 (16%)

Query: 313 EMLSEDVRPDKFSI-----SSVVSSCAKLASLYHGQVVHGKAVV---LGVDDDLLVSSAL 364
           ++L++D  P  FS      SS  S   + +SL  G  +H +AVV   LG DD  ++++A+
Sbjct: 56  DLLADDPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAV 115

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKP 422
           +  Y  C   D A  VF+ MP RN V+WN++I GYAQ G+  EA+ L+  + +E  ++ P
Sbjct: 116 LSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAP 175

Query: 423 DSFTFVSVLS---------------ACLHADLFERG--QNHF--DSISAVHGITPSLDHY 463
           D +TF ++LS                 LHA + + G  ++ F   S+ +++    +L+  
Sbjct: 176 DRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDA 235

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPH-------------------KPNSLIWSTLLSVCAM 504
               + +G SSD      +I +  +                   KP   ++ST+ SVC  
Sbjct: 236 KVAFDQVG-SSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGR 294

Query: 505 KGDIKHGEMAARH-LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            G ++ G+    H L      +A  +  L  MY+ CG   D   + SS    NV  +
Sbjct: 295 MGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISY 351



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 156/389 (40%), Gaps = 65/389 (16%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++T L   +L FYA   +   AR +FD MP R+ ++WNAL+  +A++G  ++   LF  M
Sbjct: 107 DSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDM 166

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRG 175
                                RE     S +  DR+  P   + +       + L+L  G
Sbjct: 167 --------------------KREG----SHVAPDRYTFPALLSGIGREGGSGRTLEL--G 200

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             +H  ++   L  + FV  +L  +YA    ++ A+  FD++ + + + W+ MIS Y+  
Sbjct: 201 GALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNC 260

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDN------- 288
            + +  + +F  M    + P +   S +   C + G I + G+  H    K N       
Sbjct: 261 EEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMG-ILEMGKQVHAHSLKSNTEKDAAM 319

Query: 289 -----------------------------VCWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
                                        + + +MI    Q+G  ++AL  F +M    +
Sbjct: 320 FNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGL 379

Query: 320 RPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378
            PD+ ++ +++SS      ++ G Q+ +    + G+       + ++DM  + G    A 
Sbjct: 380 MPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAM 439

Query: 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLE 407
              N MP         ++ G     +D+E
Sbjct: 440 KTINEMPFEAEAPLWRIVLGACSKHRDIE 468


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 335/598 (56%), Gaps = 52/598 (8%)

Query: 110 RALFDKMP-IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD---YTHVSALNA 165
           R +FD+ P +  ++ +N  I  ++    S+E+L +F +M      PT    YT      A
Sbjct: 107 RIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTA 165

Query: 166 CAQLLDLR-RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVS 224
           C++   LR  G+ +HG +V      ++FV N+L +MY+    +  A+ +FD M  R++++
Sbjct: 166 CSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVIT 225

Query: 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284
           W  ++ GY   G+                                   +  A  LF ++ 
Sbjct: 226 WTSVVKGYAMRGE-----------------------------------LVRARELFDMMP 250

Query: 285 EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VRPDKFSISSVVSSCAKLASLYHGQ 343
            +++V W  M+ GY  +    +AL  FN+ML  D V+P++  + S++S+CA L +L  G+
Sbjct: 251 GRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGK 310

Query: 344 VVHGKAVVLGVDDDLL---VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYA 400
            +H   V +  +  LL   +S+ALIDMY KCG  D A  VF+ +  R++++W SMI+G +
Sbjct: 311 WIH---VYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 367

Query: 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460
            +G   E L  + ++L E  KPD  T + VL+ C H+ L E G + F  +  + GI P L
Sbjct: 368 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKL 427

Query: 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           +HY C+I+LLGR+  ++ A + IKS+P +P+ + W  LLS C + GD+  GE    H+ E
Sbjct: 428 EHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487

Query: 521 LEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
           L P  + G Y++LSN+YA+ G+WE V  +R +M  +  +     SWIEID  VH+F++ D
Sbjct: 488 LCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAAD 547

Query: 580 RTHPETEIIYEELSKLIKKLQ-EAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           + HP    I ++L+++++++  E G+ P+TK VL D  EE+K +++ +HSEKLA+A+ L+
Sbjct: 548 KLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLL 607

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
               G   IRI KN+R C DCH  MK  S +  R I++RD +RFH F  GNCSC D W
Sbjct: 608 STQEGT--IRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 179/347 (51%), Gaps = 22/347 (6%)

Query: 15  YSRGQAATEEAYTQLVLDCTRVNDVE-LAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG 73
           + R  +A +  +T +   C+R   +    + +   +  + YE +  F+ N L++ Y+   
Sbjct: 148 HGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDI-FVGNSLVNMYSIFS 206

Query: 74  KLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFAN 133
           ++  A+ +FD+MP RD+I+W +++  +A  G +   R LFD MP R+ VS+   +AG+  
Sbjct: 207 RMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVG 266

Query: 134 KGFSREALQVFSRMQ-KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF 192
             F  EALQ F+ M   D  +P +   VS L+ACA L  L +GK IH  I    +  +  
Sbjct: 267 HRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSN 326

Query: 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252
           +  AL DMYAK G ID AR +FD ++ R+L++W  MISG   +G   +C+  F EM   G
Sbjct: 327 ISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEG 386

Query: 253 LNPDEVTVSNILGACFQTGRIDDAGRLFH--------VIKEKDNVCWTTMIVGYTQNGKE 304
             PD++T+  +L  C  +G +++   +FH        V K +   C   ++    + G+ 
Sbjct: 387 FKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLL---GRAGRL 443

Query: 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV 351
           E A   F  + S  + PD  +  +++S+C       HG V  G+ ++
Sbjct: 444 ESA---FEAIKSMPMEPDVVAWRALLSACR-----IHGDVDLGERII 482



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 176/419 (42%), Gaps = 103/419 (24%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMP-LRDIISWNALLSAHARSGSVQDLRALFDK 115
           NT+ L   L+H Y     L +AR +FD+ P L   I WN ++ A++++ S Q+   LF +
Sbjct: 86  NTSLL-GPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKTPSSQESLYLFHQ 144

Query: 116 MPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD-YTHVSALNACAQLLDLR- 173
           M                              +   R    D YT      AC++   LR 
Sbjct: 145 M------------------------------LAHGRPTSADKYTFTFVFTACSRHPTLRG 174

Query: 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYA---------------------------KG-- 204
            G+ +HG +V      ++FV N+L +MY+                           KG  
Sbjct: 175 YGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYA 234

Query: 205 --GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVS 261
             GE+ +AR LFD M  RN VSW +M++GY+ +    + +  F +M     + P+E  + 
Sbjct: 235 MRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLV 294

Query: 262 NILGAC-----------------------------------FQTGRIDDAGRLFHVIKEK 286
           +IL AC                                    + GRID A R+F  + ++
Sbjct: 295 SILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKR 354

Query: 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVV 345
           D + WT+MI G + +G   + L  F+EML+E  +PD  ++  V++ C+    +  G  + 
Sbjct: 355 DLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIF 414

Query: 346 HGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMINGYAQNG 403
           H    + G+   L     LID+  + G  + A+     MP   +VV+W ++++    +G
Sbjct: 415 HDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG 473



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 26/211 (12%)

Query: 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384
           S S+ V    K  SL   + +H + V  G+  +  +   LI  Y  C     A  VF+  
Sbjct: 54  SHSTFVQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQF 113

Query: 385 PT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP---DSFTFVSVLSAC-LHADL 439
           P+    + WN MI  Y++     E+L L+ ++L    +P   D +TF  V +AC  H  L
Sbjct: 114 PSLPPTIIWNLMIQAYSKTPSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTACSRHPTL 172

Query: 440 FERGQNHFDSISAVHGITPSLDHYA-------CMINLLGRSSDVDKAVDLIKSLPHKPNS 492
              G+N       VHG+    D Y         ++N+    S +  A  +   +P + + 
Sbjct: 173 RGYGEN-------VHGMVVK-DGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQR-DV 223

Query: 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523
           + W++++   AM+G++    + AR LF++ P
Sbjct: 224 ITWTSVVKGYAMRGEL----VRARELFDMMP 250


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  380 bits (977), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/534 (37%), Positives = 305/534 (57%), Gaps = 35/534 (6%)

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           +F+ N L +MY K   ++ A  LFD+M  RN++SW  MIS Y K    +K ++L   M  
Sbjct: 48  MFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR 107

Query: 251 LGLNPDEVTVSNILGAC--------------------------------FQTGRIDDAGR 278
            G+ P+  T S++L AC                                 + G  +DA  
Sbjct: 108 DGVRPNVYTYSSVLRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALS 167

Query: 279 LFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338
           +F  +   D + W ++I G+ QN + + AL LF  M       ++ +++SV+ +C  LA 
Sbjct: 168 VFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLAL 227

Query: 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMING 398
           L  G   H    ++  D DL++++AL+DMYCKCG  +DA  VFN M  R+V++W++MI+G
Sbjct: 228 LELGMQAH--VHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISG 285

Query: 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458
            AQNG   EAL L++ +     KP+  T V VL AC HA L E G  +F S+  ++GI P
Sbjct: 286 LAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINP 345

Query: 459 SLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518
             +HY CMI+LLG++  +D AV L+  +  +P+++ W TLL  C ++ ++   E AA+ +
Sbjct: 346 GREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKV 405

Query: 519 FELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578
             L+P +AG Y +LSN+YA   +W+ V  IR  M+   +KK    SWIE++ ++H F+  
Sbjct: 406 IALDPEDAGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIG 465

Query: 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLI 638
           D +HP+   + ++L++LI +L   G+ P T  VL D + E+   S+ +HSEKLALA+ L+
Sbjct: 466 DESHPQIVEVNKKLNQLIHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLM 525

Query: 639 KKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSC 692
             P     IRI KN+R+CGDCH+F K AS +  R I++RD  R+HHF  G CSC
Sbjct: 526 TLP-SEKVIRIRKNLRICGDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 114/423 (26%), Positives = 194/423 (45%), Gaps = 70/423 (16%)

Query: 11  IDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYA 70
           +D+L S G  A    Y++L+  C     V     +  H+  N ++P   FL N L++ Y 
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQP-MMFLVNVLINMYV 59

Query: 71  KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAG 130
           K                     +N L  AH           LFD+MP R+ +S+ T I+ 
Sbjct: 60  K---------------------FNLLNDAHQ----------LFDQMPQRNVISWTTMISA 88

Query: 131 FANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190
           ++     ++AL++   M +D   P  YT+ S L AC  + D+R    +H  I+   L  +
Sbjct: 89  YSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVR---MLHCGIIKEGLESD 145

Query: 191 VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQL 250
           V+VR+AL D++AK GE + A  +FD M   + + WN +I G+ +N +    ++LF+ M+ 
Sbjct: 146 VYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKR 205

Query: 251 LGLNPDEVTVSNILGACF---------------------------------QTGRIDDAG 277
            G   ++ T++++L AC                                  + G ++DA 
Sbjct: 206 AGFIAEQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDAR 265

Query: 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLA 337
           R+F+ +KE+D + W+TMI G  QNG  ++AL LF  M S   +P+  +I  V+ +C+   
Sbjct: 266 RVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAG 325

Query: 338 SLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSM 395
            L  G         + G++        +ID+  K G  DDA  + N M    + V+W ++
Sbjct: 326 LLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTL 385

Query: 396 ING 398
           +  
Sbjct: 386 LGA 388



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 142/273 (52%), Gaps = 10/273 (3%)

Query: 89  DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQ 148
           D+   +AL+   A+ G  +D  ++FD+M   D++ +N+ I GFA    S  AL++F RM+
Sbjct: 145 DVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMK 204

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
           +  F     T  S L AC  L  L  G Q H  IV      ++ + NAL DMY K G ++
Sbjct: 205 RAGFIAEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLILNNALVDMYCKCGSLE 262

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR +F++M  R++++W+ MISG  +NG  ++ + LF+ M+  G  P+ +T+  +L AC 
Sbjct: 263 DARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACS 322

Query: 269 QTGRIDDAGRLFHVIKEKDNVC-----WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G ++D    F  +K+   +      +  MI    + GK +DA+ L NEM  E   PD 
Sbjct: 323 HAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECE---PDA 379

Query: 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356
            +  +++ +C    ++   +    K + L  +D
Sbjct: 380 VTWRTLLGACRVQRNMVLAEYAAKKVIALDPED 412



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 165/337 (48%), Gaps = 36/337 (10%)

Query: 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311
           G  P    V+ ++    +   ++DA +LF  + +++ + WTTMI  Y++    + AL L 
Sbjct: 43  GHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELL 102

Query: 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371
             ML + VRP+ ++ SSV+ +C  ++ +   +++H   +  G++ D+ V SALID++ K 
Sbjct: 103 VLMLRDGVRPNVYTYSSVLRACNGMSDV---RMLHCGIIKEGLESDVYVRSALIDVFAKL 159

Query: 372 GVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431
           G  +DA +VF+ M T + + WNS+I G+AQN +   AL L+ ++ +     +  T  SVL
Sbjct: 160 GEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVL 219

Query: 432 SACLHADLFERG-QNHF------------DSISAVHGITPSLDH---------------Y 463
            AC    L E G Q H             +++  ++    SL+                +
Sbjct: 220 RACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITW 279

Query: 464 ACMINLL---GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520
           + MI+ L   G S +  K  +L+KS   KPN +    +L  C+  G ++ G    R + +
Sbjct: 280 STMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKK 339

Query: 521 LEPINAGP--YIMLSNMYAACGRWEDVASIRSSMKSK 555
           L  IN G   Y  + ++    G+ +D   + + M+ +
Sbjct: 340 LYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECE 376



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 67/280 (23%), Positives = 124/280 (44%), Gaps = 37/280 (13%)

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
            + + S  +  D  + S ++  C    +++ G ++       G    + + + LI+MY K
Sbjct: 1   MDSLQSHGLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVK 60

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
             + +DA  +F+ MP RNV+SW +MI+ Y++     +AL L   +L++ ++P+ +T+ SV
Sbjct: 61  FNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSV 120

Query: 431 LSAC--------LHA------------------DLFERGQNHFDSISAV-HGITPSLDHY 463
           L AC        LH                   D+F +     D++S     +T     +
Sbjct: 121 LRACNGMSDVRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVW 180

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSV---CAMKGDIKHGEMAARHLFE 520
             +I    ++S  D A++L K +         +TL SV   C     ++ G  A  H+ +
Sbjct: 181 NSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK 240

Query: 521 LEP---INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557
            +    +N      L +MY  CG  ED   + + MK ++V
Sbjct: 241 YDQDLILNNA----LVDMYCKCGSLEDARRVFNQMKERDV 276



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 95/185 (51%), Gaps = 16/185 (8%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           +D+I  NAL+  + + GS++D R +F++M  RD ++++T I+G A  G+S+EAL++F  M
Sbjct: 243 QDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELM 302

Query: 148 QKDRFEPTDYTHVSALNAC--AQLLD-----LRRGKQIHGKIVVGNLGGNVFVRNALTDM 200
           +    +P   T V  L AC  A LL+      R  K+++G     N G   +    + D+
Sbjct: 303 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI----NPGREHY--GCMIDL 356

Query: 201 YAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVT 259
             K G++D A  L + M    + V+W  ++       Q    +  +   +++ L+P++  
Sbjct: 357 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGAC--RVQRNMVLAEYAAKKVIALDPEDAG 414

Query: 260 VSNIL 264
              +L
Sbjct: 415 TYTVL 419


>gi|125544635|gb|EAY90774.1| hypothetical protein OsI_12377 [Oryza sativa Indica Group]
          Length = 653

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/566 (35%), Positives = 306/566 (54%), Gaps = 45/566 (7%)

Query: 175 GKQIHGKIVV-GNLGGN--VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231
           G Q+H + VV G LGG+    +  A+   YA   E D AR +FD M  RN V+WN +I G
Sbjct: 89  GAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKG 148

Query: 232 YLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTG------------------ 271
           Y + G+ ++ I LF++M+  G  + PD  T   +L    + G                  
Sbjct: 149 YAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIK 208

Query: 272 ---------------------RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310
                                 ++DA   F  +   D + W++MI  Y    +EE AL++
Sbjct: 209 AGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLI 268

Query: 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370
           F  ML +D++P +F  S+V S C ++  L  G+ VH  ++    + D  + +AL+ MY  
Sbjct: 269 FFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSD 328

Query: 371 CGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430
           CG  +DA  VF+     NV+S+NSMI+   Q+G   EAL  + ++    L PD  T +++
Sbjct: 329 CGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNL 388

Query: 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP 490
           +S+  HA L   G   F+S+  + GI P   HYAC++++L RS ++ KA+  I  +P + 
Sbjct: 389 ISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEA 448

Query: 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550
            + +W  +L  C+   DI+ G+  A  LFE+EP  A  YI+L N+YA  GRW +   +RS
Sbjct: 449 EAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRS 508

Query: 551 SMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKL 610
            M  + V K  A+SWIE+  + ++F  +DR+HP +  IY  L +LI  ++ AG+ P+   
Sbjct: 509 LMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVPDISF 568

Query: 611 VLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDII 670
             H+ Q + K +S+ YH EKLA A+  +  P G T +RIMKN+RVCGDCH   K+ S + 
Sbjct: 569 AAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGT-LRIMKNLRVCGDCHCAYKYFSLVT 627

Query: 671 GRTIILRDSNRFHHFVGGNCSCKDNW 696
           GR IILRD+ RFHHF  G CSC D W
Sbjct: 628 GREIILRDNQRFHHFNSGFCSCGDYW 653



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 123/242 (50%), Gaps = 11/242 (4%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD     +L+S +A   +++D +  FD++   D + +++ I+ + N      AL +F  M
Sbjct: 213 RDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNM 272

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
                +PT + + +  + C ++  L  GKQ+H   +  N   +  + NAL  MY+  G I
Sbjct: 273 LCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCI 332

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
           + A+ +F   +  N++S+N MIS   ++G PK+ ++ F++M+  GL PDEVT+ N++ + 
Sbjct: 333 NDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSF 392

Query: 268 FQTGRIDDAGRLFHVIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDV 319
              G + +  ++F+ + + + +        C   M+    + GK   A+   NEM  E  
Sbjct: 393 NHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGK---AMKTINEMPFEAE 449

Query: 320 RP 321
            P
Sbjct: 450 AP 451



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 137/297 (46%), Gaps = 50/297 (16%)

Query: 313 EMLSEDVRPDKFSI-----SSVVSSCAKLASLYHGQVVHGKAVV---LGVDDDLLVSSAL 364
           ++L++D  P  FS      SS  S   + +SL  G  +H +AVV   LG DD  ++++A+
Sbjct: 55  DLLADDPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAV 114

Query: 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKP 422
           +  Y  C   D A  VF+ MP RN V+WN++I GYAQ G+  EA+ L+  + +E  ++ P
Sbjct: 115 LSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAP 174

Query: 423 DSFTFVSVLS---------------ACLHADLFERG--QNHF--DSISAVHGITPSLDHY 463
           D +TF ++LS                 LHA + + G  ++ F   S+ +++    +L+  
Sbjct: 175 DRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDA 234

Query: 464 ACMINLLGRSSDVDKAVDLIKSLPH-------------------KPNSLIWSTLLSVCAM 504
               + +G SSD      +I +  +                   KP   ++ST+ SVC  
Sbjct: 235 KVAFDQVG-SSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGR 293

Query: 505 KGDIKHGEMAARH-LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKF 560
            G ++ G+    H L      +A  +  L  MY+ CG   D   + SS    NV  +
Sbjct: 294 MGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISY 350



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/388 (20%), Positives = 157/388 (40%), Gaps = 63/388 (16%)

Query: 57  NTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKM 116
           ++T L   +L FYA   +   AR +FD MP R+ ++WNAL+  +A++G  ++   LF  M
Sbjct: 106 DSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDM 165

Query: 117 PIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-PTDYTHVSALNACAQLLDLRRG 175
                                RE     S +  DR+  P   + +       + L+L  G
Sbjct: 166 --------------------KREG----SHVAPDRYTFPALLSGIGREGGSGRTLEL--G 199

Query: 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN 235
             +H  ++   L  + FV  +L  +YA    ++ A+  FD++ + + + W+ MIS Y+  
Sbjct: 200 GALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNC 259

Query: 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR----------------------- 272
            + +  + +F  M    + P +   S +   C + G                        
Sbjct: 260 EEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMF 319

Query: 273 ------------IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320
                       I+DA ++F      + + + +MI    Q+G  ++AL  F +M    + 
Sbjct: 320 NALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLM 379

Query: 321 PDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379
           PD+ ++ +++SS      ++ G Q+ +    + G+       + ++DM  + G    A  
Sbjct: 380 PDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMK 439

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLE 407
             N MP         ++ G     +D+E
Sbjct: 440 TINEMPFEAEAPLWRIVLGACSKHRDIE 467


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/563 (35%), Positives = 320/563 (56%), Gaps = 42/563 (7%)

Query: 175 GKQIHG-KIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYL 233
           G+Q+H   I  G    + F  +AL  MY        AR  FD + + N V    M SGY+
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 234 KNGQPKKCIDLFQEMQL-------------------------------------LGLNPD 256
           +N      + LF+++                                        GL+ D
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 257 EVTVSNILGACFQTGRID-DAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315
              V+ +L A  + GR D  A R      EKD V W +MI  Y QNG   DAL L+ +ML
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFDTMEKDVVSWNSMIALYAQNGMSADALGLYRKML 287

Query: 316 --SEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373
             S  ++ +  ++S+++ +CA   ++  G+ +H + V +G+++++ V ++++DMY KCG 
Sbjct: 288 NVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGR 347

Query: 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433
            + A   F  +  +N++SW++MI GY  +G   EAL +++++ +    P+  TF+SVL+A
Sbjct: 348 VEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAA 407

Query: 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSL 493
           C HA L ++G+  ++++    GI P ++HY CM++LLGR+  +D+A  LIK +  KP++ 
Sbjct: 408 CSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAA 467

Query: 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553
           IW  LLS C +  +++  E++A+ LFEL+  N G Y++LSN+YA  G W+DV  +R  +K
Sbjct: 468 IWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVK 527

Query: 554 SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLH 613
           ++ ++K   YS +E+  + H F   D++HP+ + IY  L KL++K+QEAG+ PNT  VLH
Sbjct: 528 TRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLH 587

Query: 614 DTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRT 673
           D  EEEK  ++  HSEKLA+A+ L+    G + I ++KN+RVC DCH  +K  + I  R 
Sbjct: 588 DLDEEEKASALHIHSEKLAIAFALMNSVPG-SVIHVIKNLRVCTDCHTAIKLITKIAQRE 646

Query: 674 IILRDSNRFHHFVGGNCSCKDNW 696
           II+RD  RFHHF  G+CSC D W
Sbjct: 647 IIVRDLQRFHHFKDGSCSCGDYW 669



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 136/250 (54%), Gaps = 15/250 (6%)

Query: 94  NALLSAHARSGSVQDL---RALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM--Q 148
           N +L A+A+ G  +DL   R +FD M  +D VS+N+ IA +A  G S +AL ++ +M   
Sbjct: 232 NTMLDAYAKGGR-RDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRKMLNV 289

Query: 149 KDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID 208
               +    T  + L ACA    ++ GK IH ++V   L  NV+V  ++ DMY+K G ++
Sbjct: 290 SGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVE 349

Query: 209 KARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF 268
            AR  F ++  +N++SW+ MI+GY  +G  ++ +D+F EM   G NP+ +T  ++L AC 
Sbjct: 350 MARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACS 409

Query: 269 QTGRIDDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK 323
             G +D     ++ +K++  +      +  M+    + G  ++A  L  EM    V+PD 
Sbjct: 410 HAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM---KVKPDA 466

Query: 324 FSISSVVSSC 333
               +++S+C
Sbjct: 467 AIWGALLSAC 476



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 83/207 (40%), Gaps = 34/207 (16%)

Query: 27  TQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMP 86
           + ++L C     ++  K + + +     E N  ++   ++  Y+K G++  AR  F K+ 
Sbjct: 301 SAILLACAHAGTIQTGKCIHNQVVRMGLEENV-YVGTSVVDMYSKCGRVEMARKAFQKIK 359

Query: 87  LRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSR 146
            ++I+SW+A+                               I G+   G  +EAL +F+ 
Sbjct: 360 EKNILSWSAM-------------------------------ITGYGMHGHGQEALDIFNE 388

Query: 147 MQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-NLGGNVFVRNALTDMYAKGG 205
           M +    P   T +S L AC+    L +G+  +  +     +   V     + D+  + G
Sbjct: 389 MCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAG 448

Query: 206 EIDKARWLFDRMNNR-NLVSWNLMISG 231
            +D+A  L   M  + +   W  ++S 
Sbjct: 449 CLDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 301/537 (56%), Gaps = 36/537 (6%)

Query: 195 NALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254
           N L   Y K G+++ AR LFD M  RN+ +WN M++G   +G  ++ +  F  M+  G+ 
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQ 63

Query: 255 PDEVTVSNILGAC-----------------------------------FQTGRIDDAGRL 279
           PDE  + ++   C                                    + G + D    
Sbjct: 64  PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAA 123

Query: 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339
              +   + V   T I G TQNG  E AL  F  M    V  +  +  S V+SC+ LA+L
Sbjct: 124 LRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAAL 183

Query: 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGY 399
             GQ +H  A+  GVD  + V ++L+ MY +CG   D+  V       ++V  ++MI+ Y
Sbjct: 184 AQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAY 243

Query: 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459
             +G   +A+ L+ +++    +P+  TF+++L AC H+ L + G N F+ ++  +G+ PS
Sbjct: 244 GFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPS 303

Query: 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519
           + HY C+++LLGRS  +++A DLI S+P +P+ +IW TLLS C  +      E  A  + 
Sbjct: 304 VKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363

Query: 520 ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSED 579
           EL+P ++  Y++LSN+ A   RWEDV+ +R +M+ +NV+K    SW+E+  ++H+F + D
Sbjct: 364 ELDPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGD 423

Query: 580 RTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIK 639
            +H     I E L +++ ++++ G++P+  +V HD ++EEK  S+ +HSEKLA+A+  + 
Sbjct: 424 ESHSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLS 483

Query: 640 KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            P GV PIR+MKN+RVC DCH+ +K  S +IGR I++RD +RFHHF  G CSC D W
Sbjct: 484 LPEGV-PIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 154/344 (44%), Gaps = 37/344 (10%)

Query: 91  ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150
           +SWN L+  + ++G ++  R LFD+MP R+  ++N  +AG  N G + E+L  F  M+++
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210
             +P +Y   S    CA L D+  G+Q+H  +V   L  ++ V ++L  MY + G +   
Sbjct: 61  GMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDG 120

Query: 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC--- 267
                 + + N+VS N  ISG  +NG  +  ++ F  M+  G+  + VT  + + +C   
Sbjct: 121 EAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDL 180

Query: 268 --------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMI 295
                                            + G + D+ R+       D V  + MI
Sbjct: 181 AALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMI 240

Query: 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHG-QVVHGKAVVLGV 354
             Y  +G  + A+ LF +M++    P++ +  +++ +C+       G           G+
Sbjct: 241 SAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGL 300

Query: 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMIN 397
              +   + ++D+  + G  ++A  +   MP + + V W ++++
Sbjct: 301 QPSVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLS 344



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 123/253 (48%), Gaps = 12/253 (4%)

Query: 88  RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRM 147
           RD+   ++L   + R G ++D  A    +P  + VS NT I+G    G +  AL+ F  M
Sbjct: 99  RDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLM 158

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           +    E    T VSA+ +C+ L  L +G+QIH   +   +   V V  +L  MY++ G +
Sbjct: 159 RGAGVEANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCL 218

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
             +  +    +  +LV  + MIS Y  +G  +K + LF++M   G  P+EVT   +L AC
Sbjct: 219 GDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYAC 278

Query: 268 FQTGRIDDAGRLFHVIKE----KDNVCWTTMIV---GYTQNGKEEDALILFNEMLSEDVR 320
             +G  D+    F ++ +    + +V   T IV   G +    E + LI     LS  V+
Sbjct: 279 SHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLI-----LSMPVQ 333

Query: 321 PDKFSISSVVSSC 333
           PD     +++S+C
Sbjct: 334 PDGVIWKTLLSAC 346


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 321/574 (55%), Gaps = 42/574 (7%)

Query: 160 VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219
           ++A++ C+ +   R    +H +++      + F+ + L   Y + G    A  LFD + +
Sbjct: 45  ITAISTCSSISYCR---ALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPD 101

Query: 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQL-LGLNPDEVTVSNILGACFQTGRIDDAGR 278
           ++LVSWN +ISG+ +      C+ L   M+  +GL P+EVTV  ++ AC   G +D  G+
Sbjct: 102 KDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELD-VGK 160

Query: 279 LFHVIKEKDN------------------------------------VCWTTMIVGYTQNG 302
             H I  K                                      V W +M+  +   G
Sbjct: 161 CIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMG 220

Query: 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362
             E  +  F  M    +  D+ ++ S++ +C  L      + VHG  +  G+D +L +++
Sbjct: 221 LAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIAT 280

Query: 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422
           AL+D+Y K G   D+  VF  M   + V+W +M++ YA +G+  EA+  ++ +++E + P
Sbjct: 281 ALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVP 340

Query: 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482
           D  TF  +LSAC H+ L E G+N+F  +   +G+   ++HY+CM++LLGRS  ++ A  L
Sbjct: 341 DHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKL 400

Query: 483 IKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542
           IKS+P +PNS +W  L+  C ++G+I+ G+  A  LF L+P ++  YI LSNMY+A G+W
Sbjct: 401 IKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQW 460

Query: 543 EDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEA 602
            D + +R+ MK + + +    S+IE  NK+H FV  D++HP+TE IY +L +L++K +E 
Sbjct: 461 RDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNREV 520

Query: 603 GFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLF 662
           GF+  T+ VLHD  EE K   I  HSEKLA+A+ L+    G+ P+ I KNIR+CGDCH F
Sbjct: 521 GFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGM-PLIITKNIRICGDCHGF 579

Query: 663 MKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696
            K  S I  RTII+RD+ RFHHF  G CSC D W
Sbjct: 580 AKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 167/348 (47%), Gaps = 54/348 (15%)

Query: 96  LLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE-- 153
           L+S++   G  +D   LFD++P +D VS+N+ I+GF+ +      L +  RM   RFE  
Sbjct: 79  LVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRADLGICLGLLFRM---RFEMG 135

Query: 154 --PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKAR 211
             P + T +  ++ACA + +L  GK IHG  V   +   V V N+L ++Y K G ++ A 
Sbjct: 136 LKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAAC 195

Query: 212 WLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC---- 267
            LF+ M+ ++LVSWN M++ ++  G  +K I  F  M+  G+N D+ TV ++L AC    
Sbjct: 196 CLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLG 255

Query: 268 -------------------------------FQTGRIDDAGRLFHVIKEKDNVCWTTMIV 296
                                           + G + D+ ++F  +   D V WT M+ 
Sbjct: 256 VRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLS 315

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV------ 350
            Y  +G+  +A+  F  M+ E V PD  + + ++S+C+     + G V  GK        
Sbjct: 316 SYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACS-----HSGLVEEGKNYFKIMYE 370

Query: 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR-NVVSWNSMIN 397
             GV+  +   S ++D+  + G  +DA+ +   MP   N   W ++I 
Sbjct: 371 FYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIG 418



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 155/326 (47%), Gaps = 11/326 (3%)

Query: 94  NALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE 153
           N+L++ + + G ++    LF+ M ++  VS+N+ +A   + G + + +  F  M++    
Sbjct: 179 NSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGIN 238

Query: 154 PTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213
               T VS L AC  L   +  + +HG I+ G L GN+ +  AL D+YAK G +  +  +
Sbjct: 239 SDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKV 298

Query: 214 FDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273
           F  M N + V+W  M+S Y  +G+ ++ I+ F+ M   G+ PD VT +++L AC  +G +
Sbjct: 299 FGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLV 358

Query: 274 DDAGRLFHVIKEKDNV-----CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328
           ++    F ++ E   V      ++ M+    ++G   DA  L   M  E   P+     +
Sbjct: 359 EEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPME---PNSGVWGA 415

Query: 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388
           ++ +C    ++  G+ V  +   L   D     + L +MY   G   DA  V  +M  R 
Sbjct: 416 LIGACRVRGNIELGKEVAERLFSLDPSDSRNYIT-LSNMYSAAGQWRDASKVRALMKERV 474

Query: 389 VVSWNSMINGYAQNGQDLEALALYDK 414
           ++        Y ++G  +    + D+
Sbjct: 475 LIRNPGC--SYIEHGNKIHCFVMGDQ 498



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 93/178 (52%), Gaps = 5/178 (2%)

Query: 326 ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385
           +S+++++ +  +S+ + + +H + +     +   +   L+  Y + G T DA  +F+ +P
Sbjct: 41  VSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELP 100

Query: 386 TRNVVSWNSMINGYAQNGQDLEALALYDKL-LQENLKPDSFTFVSVLSACLHADLFERGQ 444
            +++VSWNS+I+G+++       L L  ++  +  LKP+  T + V+SAC      + G+
Sbjct: 101 DKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGK 160

Query: 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSV 501
                I+   G+   +     +INL G+   ++ A  L + +     SL+ W+++++V
Sbjct: 161 C-IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGM--SVQSLVSWNSMVAV 215



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 113/278 (40%), Gaps = 49/278 (17%)

Query: 18  GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFY 77
           G  + +     L+L C  +   +LA+ +  ++ LN        +   LL  YAK G L  
Sbjct: 236 GINSDQATVVSLLLACENLGVRKLAEAVHGYI-LNGGLDGNLAIATALLDLYAKLGTLSD 294

Query: 78  ARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137
           +  +F  M   D ++W A+LS++A  G                                 
Sbjct: 295 SCKVFGGMINPDAVAWTAMLSSYAMHGR-------------------------------G 323

Query: 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVR--N 195
           REA++ F  M ++   P   T    L+AC+    +  GK  + KI+    G  + V   +
Sbjct: 324 REAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKN-YFKIMYEFYGVELRVEHYS 382

Query: 196 ALTDMYAKGGEIDKARWLFDRMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEM--QLLG 252
            + D+  + G ++ A  L   M    N   W  +I      G     I+L +E+  +L  
Sbjct: 383 CMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGN----IELGKEVAERLFS 438

Query: 253 LNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKEK 286
           L+P +    +T+SN+  A    G+  DA ++  ++KE+
Sbjct: 439 LDPSDSRNYITLSNMYSA---AGQWRDASKVRALMKER 473


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/665 (32%), Positives = 344/665 (51%), Gaps = 71/665 (10%)

Query: 69  YAKSGKLFYARDLFDKMPLR--DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126
           YA++G L  A       P     I +WNALL+AH+R  S                     
Sbjct: 46  YARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGAS--------------------- 84

Query: 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGN 186
                       EAL+VF R       P   T   AL+ACA+L DL  G+ +  +     
Sbjct: 85  ----------PHEALRVF-RALPPAARPDSTTFTLALSACARLGDLATGEVVTDRASGAG 133

Query: 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQ 246
            G ++FV +++ ++YAK G +D A  +FDRM  R+ V+W+ M++G++  GQP + I+++ 
Sbjct: 134 YGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYM 193

Query: 247 EMQLLGLNPDEVTVSNILGACFQTGR---------------------------------- 272
            M+  GL  DEV +  ++ AC  TG                                   
Sbjct: 194 RMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNG 253

Query: 273 -IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331
             D A R+F ++  +++V W+ +I    Q G  ++AL LF  M    + P+   +   + 
Sbjct: 254 LFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALL 313

Query: 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS 391
           +C+ L  L  G+ +HG  ++  ++ D +V +A+IDMY KCG    A  +F+ + +R+++S
Sbjct: 314 ACSDLGLLKLGKSIHG-FILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLIS 372

Query: 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451
           WN MI     +G+  +AL+L+ ++ +  ++PD  TF S+LSA  H+ L E G+  F+ + 
Sbjct: 373 WNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMV 432

Query: 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511
             +GI P   H  C+++LL RS  V++A  L+ SL  KP   I   LLS C     ++ G
Sbjct: 433 NEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELG 492

Query: 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571
           E  A  + EL+P + G   ++SN+YAA   W  V  +R  MK    KK    S IEI   
Sbjct: 493 ESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGA 552

Query: 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKL 631
           +H FV ED++HP+   I + + KL  ++++ G+ P T+ V HD +E  K + +  HSE+L
Sbjct: 553 LHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERL 612

Query: 632 ALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691
           A A+ L+    G T + ++KN+RVCGDCH  +K+ S I  R I++RD+ RFHHF  G CS
Sbjct: 613 ATAFGLLNTSPG-TRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACS 671

Query: 692 CKDNW 696
           C D W
Sbjct: 672 CGDYW 676



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 52/337 (15%)

Query: 9   QAIDTLYSR----GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNR 64
           QAI+ +Y R    G  A E     ++  C    D  +   +  ++ L         +   
Sbjct: 187 QAIE-MYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYL-LRHAMQMDVVISTS 244

Query: 65  LLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSY 124
           L+  YAK+G    AR +F+ MP R+ +SW+AL+S                          
Sbjct: 245 LVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQ------------------------- 279

Query: 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV 184
                  A  G + EAL +F  MQ     P     V AL AC+ L  L+ GK IHG  ++
Sbjct: 280 ------LAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHG-FIL 332

Query: 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDL 244
             L  +  V  A+ DMY+K G +  A+ LFD++ +R+L+SWN+MI+    +G+ +  + L
Sbjct: 333 RTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSL 392

Query: 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI--------KEKDNVCWTTMIV 296
           FQEM+   + PD  T +++L A   +G +++    F+ +         EK  VC   ++ 
Sbjct: 393 FQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLL- 451

Query: 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333
              ++G  E+A  L   + S   +P    + +++S C
Sbjct: 452 --ARSGLVEEANGLVASLHS---KPTISILVALLSGC 483


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 221/680 (32%), Positives = 374/680 (55%), Gaps = 71/680 (10%)

Query: 31  LDCTRVNDVELAKRLQSHMDLNFYEPNTTFLH-NRLLHFYAKSGKLFYARDLFDKMPLRD 89
           + C    +V L  R  +H          +FLH  R LH    +  L        K P R 
Sbjct: 1   MKCLSYQNVRLLLRQSAH---------RSFLHPGRELHAVLTTSGL-------KKAP-RS 43

Query: 90  IISWNALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAGFANKGFSREALQVFSRM 147
            +S NAL   +A SG +   + LFD++P+  +D+V + T ++ F+  G    ++++F  M
Sbjct: 44  YLS-NALFQFYASSGEIATAQKLFDEIPLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEM 102

Query: 148 QKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207
           ++ R E    + V     CA+L DLR G+Q HG  V      +V V NAL DMY K G +
Sbjct: 103 RRKRVEIDHVSLVCLFGVCAKLEDLRFGEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFV 162

Query: 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267
            + + +F  +  +++VSW +++   +K    K+  ++F EM                   
Sbjct: 163 SEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEM------------------- 203

Query: 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-SI 326
                            E++ V WT M+ GY   G   + L L  EM+        F ++
Sbjct: 204 ----------------PERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTL 247

Query: 327 SSVVSSCAKLASLYHGQVVH----GKAVVLGVD---DDLLVSSALIDMYCKCGVTDDAWT 379
            S++S+CA+  +L  G+ VH     KA+++G +   D ++V +AL+DMY KCG  D +  
Sbjct: 248 CSMLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIK 307

Query: 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439
           VF +M  RNVV+WN++ +G A +G+    + ++ ++++E +KPD  TF ++LSAC H  +
Sbjct: 308 VFRLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGM 366

Query: 440 FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499
            + G   F S+   +G+ P +DHYACM+++LGR+  +++A  L++ +P  PN ++  +LL
Sbjct: 367 VDEGWRCFHSLQ-FYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLL 425

Query: 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559
             C++ G ++  E   R L ++ P +    I++SNMY A GR +    +R S++++ ++K
Sbjct: 426 GSCSVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRK 485

Query: 560 FAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE-- 617
               S I +++ VH+F S DR+HP T+ +Y +L+++I++++ AG+ P+   ++  ++   
Sbjct: 486 IPGLSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDL 545

Query: 618 EEKVKSICYHSEKLALAYCLIK-KPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIIL 676
           EEK +++C HSEKLA+ + L++ KP   TP+ + KN+R+C DCH  MK  S +  R II+
Sbjct: 546 EEKEQALCCHSEKLAVCFGLLETKPR--TPLLVFKNLRICRDCHSAMKIVSKVYDREIII 603

Query: 677 RDSNRFHHFVGGNCSCKDNW 696
           RD NRFH F GG+CSC D W
Sbjct: 604 RDRNRFHQFKGGSCSCSDYW 623


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,854,333,651
Number of Sequences: 23463169
Number of extensions: 448657334
Number of successful extensions: 1325605
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9489
Number of HSP's successfully gapped in prelim test: 2731
Number of HSP's that attempted gapping in prelim test: 1081623
Number of HSP's gapped (non-prelim): 76195
length of query: 696
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 546
effective length of database: 8,839,720,017
effective search space: 4826487129282
effective search space used: 4826487129282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)