BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005454
         (696 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O99|A Chain A, Crystal Structure Of The S62a Mutant Of Phosphoglycerate
           Mutase From Bacillus Stearothermophilus Complexed With
           2-Phosphoglycerate
          Length = 511

 Score = 30.4 bits (67), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT--DMYAKGGEIDKARWL 213
           +Y H + L AC + + L  G+  + ++   N+G    V  +LT  ++  + GE D+    
Sbjct: 39  EYPHTT-LKACGEAVGLPEGQMGNAEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETF 97

Query: 214 FDRMNNRNLVSWNLMISGYLKNG 236
              MN+      +L + G L +G
Sbjct: 98  LAAMNHVKQHGTSLHLFGLLSDG 120


>pdb|1EJJ|A Chain A, Crystal Structural Analysis Of Phosphoglycerate Mutase
           Cocrystallized With 3-Phosphoglycerate
 pdb|1EQJ|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Bacillus
           Stearothermophilus Complexed With 2-Phosphoglycerate
 pdb|1O98|A Chain A, 1.4a Crystal Structure Of Phosphoglycerate Mutase From
           Bacillus Stearothermophilus Complexed With
           2-Phosphoglycerate
          Length = 511

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 156 DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT--DMYAKGGEIDKARWL 213
           +Y H + L AC + + L  G+  + ++   N+G    V  +LT  ++  + GE D+    
Sbjct: 39  EYPHTT-LKACGEAVGLPEGQMGNSEVGHLNIGAGRIVYQSLTRINIAIREGEFDRNETF 97

Query: 214 FDRMNNRNLVSWNLMISGYLKNG 236
              MN+      +L + G L +G
Sbjct: 98  LAAMNHVKQHGTSLHLFGLLSDG 120


>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
          Length = 285

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 81/165 (49%), Gaps = 28/165 (16%)

Query: 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ-----LLDLRRGKQIHGKIVVGNL 187
           N G +R+ L  F RM+ D +E    T++++L    Q     +++ R G+ I+   +VG L
Sbjct: 128 NAGITRDNL--FLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVG-L 184

Query: 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE 247
            GNV   N  +   +K G I   + L   + +RN ++ N +  G++ +    K  +  ++
Sbjct: 185 TGNVGQANYSS---SKAGVIGFTKSLAKELASRN-ITVNAIAPGFISSDMTDKISEQIKK 240

Query: 248 MQLLGL------NPDEVTVSNILGACF----QTGRIDDAGRLFHV 282
             +  +       P+E  V+N+  ACF    ++G I+  GR+F +
Sbjct: 241 NIISNIPAGRMGTPEE--VANL--ACFLSSDKSGYIN--GRVFVI 279


>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Trigonal Crystal Form)
 pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
           (Orthorombic Crystal Form)
          Length = 136

 Score = 28.9 bits (63), Expect = 9.4,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 468 NLLGRSSDVDKAVDLI-KSLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525
           N   +  D D+A++   K+L   P S   W  L +    +GD        +   EL+P +
Sbjct: 9   NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68

Query: 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHK 574
           A  +  L N Y   G +++  +I    K+  +   +A +W  + N  +K
Sbjct: 69  AEAWYNLGNAYYKQGDYDE--AIEYYQKALELDPRSAEAWYNLGNAYYK 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,327,152
Number of Sequences: 62578
Number of extensions: 820542
Number of successful extensions: 1900
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1897
Number of HSP's gapped (non-prelim): 18
length of query: 696
length of database: 14,973,337
effective HSP length: 106
effective length of query: 590
effective length of database: 8,340,069
effective search space: 4920640710
effective search space used: 4920640710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)