Query 005454
Match_columns 696
No_of_seqs 775 out of 4918
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 23:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5E-133 1E-137 1144.0 78.7 685 4-694 67-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-123 3E-128 1040.8 66.8 609 19-696 83-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.4E-75 9.5E-80 666.0 61.6 646 18-691 46-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.2E-66 1.1E-70 578.6 60.0 500 60-562 371-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.2E-62 2.6E-67 551.6 57.5 499 19-522 366-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 6.9E-59 1.5E-63 519.9 47.6 446 4-458 103-561 (697)
7 PF14432 DYW_deaminase: DYW fa 100.0 4.3E-37 9.2E-42 252.7 8.3 106 562-686 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.8E-31 8.3E-36 310.1 59.6 539 5-556 312-867 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 8.3E-31 1.8E-35 307.3 60.1 509 37-555 307-832 (899)
10 PRK11447 cellulose synthase su 99.9 2.8E-22 6E-27 236.0 55.8 538 4-555 44-700 (1157)
11 PRK11447 cellulose synthase su 99.9 1.8E-21 3.9E-26 229.2 58.4 506 38-557 160-743 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 9.1E-21 2E-25 212.9 54.4 514 25-556 44-707 (987)
13 PRK09782 bacteriophage N4 rece 99.9 6.4E-19 1.4E-23 198.2 51.4 528 7-557 60-742 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2.5E-20 5.4E-25 185.6 35.0 445 62-550 51-514 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 5.2E-20 1.1E-24 183.3 32.3 421 124-556 51-486 (966)
16 TIGR00990 3a0801s09 mitochondr 99.9 4E-18 8.6E-23 188.7 41.0 418 123-554 129-570 (615)
17 PRK11788 tetratricopeptide rep 99.8 6.6E-19 1.4E-23 185.1 29.1 292 129-424 43-353 (389)
18 PRK11788 tetratricopeptide rep 99.8 8.8E-18 1.9E-22 176.5 31.6 166 393-562 184-354 (389)
19 KOG2002 TPR-containing nuclear 99.8 2E-16 4.4E-21 166.5 40.2 525 26-555 165-745 (1018)
20 PRK10049 pgaA outer membrane p 99.8 3.8E-16 8.3E-21 176.0 43.1 392 126-555 20-456 (765)
21 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.7E-20 170.8 43.8 407 93-529 18-464 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-15 4.8E-20 166.9 43.7 440 92-554 129-596 (615)
23 PRK15174 Vi polysaccharide exp 99.8 3.3E-16 7.2E-21 172.7 36.1 326 158-526 44-386 (656)
24 PRK15174 Vi polysaccharide exp 99.8 6E-16 1.3E-20 170.7 37.8 346 203-556 17-382 (656)
25 PRK14574 hmsH outer membrane p 99.8 8.5E-15 1.8E-19 161.8 43.9 430 97-554 41-512 (822)
26 KOG2002 TPR-containing nuclear 99.8 7.1E-15 1.5E-19 155.0 40.0 512 37-558 211-801 (1018)
27 PRK14574 hmsH outer membrane p 99.8 2.1E-14 4.6E-19 158.7 45.0 445 60-529 36-521 (822)
28 KOG0495 HAT repeat protein [RN 99.7 6.2E-12 1.3E-16 127.3 48.4 465 96-571 412-894 (913)
29 KOG2076 RNA polymerase III tra 99.7 2.6E-11 5.6E-16 127.8 47.5 479 70-551 150-730 (895)
30 KOG2003 TPR repeat-containing 99.7 2.9E-13 6.2E-18 130.8 30.3 473 60-541 202-709 (840)
31 KOG4422 Uncharacterized conser 99.7 3.4E-12 7.5E-17 122.9 37.2 430 25-486 118-587 (625)
32 KOG4422 Uncharacterized conser 99.6 7.1E-12 1.5E-16 120.7 33.7 413 9-452 136-589 (625)
33 KOG2076 RNA polymerase III tra 99.6 3.9E-11 8.4E-16 126.5 41.6 516 37-555 151-849 (895)
34 KOG0495 HAT repeat protein [RN 99.6 3.7E-10 8.1E-15 114.7 45.0 479 40-534 391-893 (913)
35 KOG4318 Bicoid mRNA stability 99.6 1.2E-11 2.5E-16 129.5 34.9 233 325-557 493-810 (1088)
36 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3.1E-19 144.0 10.5 255 294-553 14-275 (280)
37 KOG0547 Translocase of outer m 99.5 2.8E-11 6.1E-16 118.8 29.5 403 124-553 118-564 (606)
38 KOG2003 TPR repeat-containing 99.5 8E-12 1.7E-16 121.0 23.8 442 25-475 200-709 (840)
39 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 107.0 38.3 480 65-553 79-623 (677)
40 KOG1155 Anaphase-promoting com 99.5 1.8E-09 3.8E-14 105.8 36.2 191 359-552 331-533 (559)
41 PRK10747 putative protoheme IX 99.5 6.4E-11 1.4E-15 123.3 28.5 283 204-522 97-391 (398)
42 PRK10747 putative protoheme IX 99.4 1.8E-10 3.8E-15 120.1 30.5 278 134-450 97-387 (398)
43 TIGR00540 hemY_coli hemY prote 99.4 3.3E-10 7.2E-15 118.7 32.1 223 295-520 160-398 (409)
44 KOG1126 DNA-binding cell divis 99.4 1.3E-11 2.8E-16 126.2 20.4 268 302-603 333-608 (638)
45 KOG1915 Cell cycle control pro 99.4 1.2E-08 2.7E-13 100.0 39.0 455 89-553 72-583 (677)
46 KOG1173 Anaphase-promoting com 99.4 5.7E-10 1.2E-14 112.0 29.9 262 287-554 243-517 (611)
47 TIGR00540 hemY_coli hemY prote 99.4 6.8E-10 1.5E-14 116.4 31.4 279 132-415 95-396 (409)
48 KOG1126 DNA-binding cell divis 99.4 4.7E-11 1E-15 122.1 21.0 274 273-556 335-621 (638)
49 KOG2047 mRNA splicing factor [ 99.4 4.1E-07 8.8E-12 93.0 48.2 467 60-543 139-711 (835)
50 PF13429 TPR_15: Tetratricopep 99.4 4.7E-12 1E-16 125.9 12.1 252 128-383 15-273 (280)
51 KOG4318 Bicoid mRNA stability 99.3 3.1E-09 6.7E-14 111.8 32.2 529 2-566 2-604 (1088)
52 KOG1155 Anaphase-promoting com 99.3 4.9E-09 1.1E-13 102.7 31.4 256 294-554 233-494 (559)
53 COG3071 HemY Uncharacterized e 99.3 3.6E-09 7.8E-14 102.2 29.0 278 134-417 97-389 (400)
54 KOG1173 Anaphase-promoting com 99.3 3.1E-08 6.7E-13 99.8 34.2 494 23-535 16-532 (611)
55 TIGR02521 type_IV_pilW type IV 99.3 6.6E-10 1.4E-14 107.4 21.8 197 357-554 30-231 (234)
56 KOG0985 Vesicle coat protein c 99.3 1.5E-07 3.3E-12 100.3 38.9 504 13-553 503-1247(1666)
57 COG2956 Predicted N-acetylgluc 99.3 1E-08 2.2E-13 96.1 26.7 268 133-433 47-324 (389)
58 COG3071 HemY Uncharacterized e 99.3 5.9E-09 1.3E-13 100.8 26.0 277 235-552 97-387 (400)
59 COG2956 Predicted N-acetylgluc 99.2 9.3E-09 2E-13 96.3 25.7 244 297-575 116-367 (389)
60 KOG2047 mRNA splicing factor [ 99.2 5.9E-07 1.3E-11 91.9 40.1 490 60-554 103-686 (835)
61 PF13041 PPR_2: PPR repeat fam 99.2 1.9E-11 4.2E-16 85.1 5.6 50 119-168 1-50 (50)
62 KOG1174 Anaphase-promoting com 99.2 1.4E-07 2.9E-12 91.4 33.3 293 231-529 205-508 (564)
63 PF13041 PPR_2: PPR repeat fam 99.2 3.6E-11 7.8E-16 83.7 6.8 50 387-436 1-50 (50)
64 KOG1840 Kinesin light chain [C 99.2 3E-09 6.6E-14 110.3 23.1 230 324-553 200-477 (508)
65 KOG4162 Predicted calmodulin-b 99.2 1.6E-07 3.4E-12 98.2 34.6 431 88-555 321-783 (799)
66 KOG3785 Uncharacterized conser 99.1 1.8E-07 4E-12 88.6 29.2 132 393-528 363-496 (557)
67 PRK12370 invasion protein regu 99.1 1.1E-08 2.3E-13 111.6 24.5 244 303-556 276-536 (553)
68 KOG2376 Signal recognition par 99.1 1.6E-06 3.4E-11 88.2 37.4 433 95-550 17-515 (652)
69 KOG0547 Translocase of outer m 99.1 2E-07 4.3E-12 92.3 29.3 409 94-522 119-567 (606)
70 KOG1129 TPR repeat-containing 99.1 3.1E-09 6.8E-14 99.3 15.2 228 292-556 227-459 (478)
71 PF12569 NARP1: NMDA receptor- 99.1 1.2E-06 2.5E-11 92.5 35.3 255 290-551 196-516 (517)
72 KOG2376 Signal recognition par 99.1 5E-06 1.1E-10 84.7 37.0 435 37-489 24-520 (652)
73 PRK12370 invasion protein regu 99.0 1.8E-08 3.9E-13 109.8 21.6 210 337-554 275-501 (553)
74 PRK11189 lipoprotein NlpI; Pro 99.0 1.8E-08 3.9E-13 100.4 19.8 190 358-556 64-266 (296)
75 TIGR02521 type_IV_pilW type IV 99.0 4.9E-08 1.1E-12 94.2 22.2 196 289-522 32-233 (234)
76 KOG1156 N-terminal acetyltrans 99.0 4.6E-06 9.9E-11 85.9 35.3 453 23-486 8-508 (700)
77 COG3063 PilF Tfp pilus assembl 99.0 3.4E-08 7.4E-13 88.5 17.6 162 391-557 37-204 (250)
78 KOG1840 Kinesin light chain [C 99.0 1E-07 2.3E-12 99.0 23.9 161 360-520 285-478 (508)
79 KOG1174 Anaphase-promoting com 99.0 6.4E-06 1.4E-10 80.2 33.4 313 254-600 191-519 (564)
80 KOG3616 Selective LIM binding 99.0 8E-07 1.7E-11 91.9 28.6 220 296-550 740-961 (1636)
81 PRK11189 lipoprotein NlpI; Pro 99.0 2.5E-07 5.5E-12 92.2 25.0 226 302-535 40-280 (296)
82 KOG4340 Uncharacterized conser 98.9 1.9E-06 4.1E-11 80.1 26.5 408 124-554 13-442 (459)
83 KOG3785 Uncharacterized conser 98.9 2.5E-06 5.4E-11 81.2 27.7 438 97-557 29-492 (557)
84 KOG1129 TPR repeat-containing 98.9 1.6E-07 3.5E-12 88.2 18.4 223 227-486 228-455 (478)
85 KOG3616 Selective LIM binding 98.9 3.2E-05 6.9E-10 80.5 36.2 348 162-551 738-1130(1636)
86 KOG0624 dsRNA-activated protei 98.9 4.4E-06 9.6E-11 79.2 27.1 316 194-554 41-369 (504)
87 KOG4162 Predicted calmodulin-b 98.8 3.5E-05 7.6E-10 81.2 35.0 430 56-527 319-789 (799)
88 KOG1156 N-terminal acetyltrans 98.8 1.5E-05 3.3E-10 82.2 31.4 383 168-556 19-469 (700)
89 KOG0985 Vesicle coat protein c 98.8 6.6E-05 1.4E-09 81.0 36.4 195 323-540 1104-1327(1666)
90 KOG3617 WD40 and TPR repeat-co 98.8 1.9E-05 4.2E-10 83.2 30.0 369 68-488 737-1173(1416)
91 PF12569 NARP1: NMDA receptor- 98.8 4E-06 8.6E-11 88.5 25.7 296 199-520 12-333 (517)
92 PRK04841 transcriptional regul 98.8 5.9E-05 1.3E-09 88.7 38.5 361 196-556 346-761 (903)
93 PF04733 Coatomer_E: Coatomer 98.7 1.4E-06 3E-11 85.6 20.6 157 362-525 106-269 (290)
94 KOG1125 TPR repeat-containing 98.7 4E-07 8.6E-12 92.4 16.4 216 333-554 295-526 (579)
95 COG3063 PilF Tfp pilus assembl 98.7 3.5E-06 7.6E-11 75.9 20.4 193 332-527 44-242 (250)
96 KOG1127 TPR repeat-containing 98.7 4.4E-05 9.6E-10 82.5 31.7 131 423-554 966-1103(1238)
97 KOG1914 mRNA cleavage and poly 98.7 0.00014 3E-09 73.6 33.0 70 60-130 21-95 (656)
98 KOG0548 Molecular co-chaperone 98.7 7.9E-05 1.7E-09 75.5 31.3 100 99-201 11-114 (539)
99 KOG1127 TPR repeat-containing 98.7 5.8E-05 1.3E-09 81.6 31.8 276 268-552 827-1135(1238)
100 KOG3617 WD40 and TPR repeat-co 98.7 0.00032 6.9E-09 74.4 36.2 238 22-283 725-993 (1416)
101 PF04733 Coatomer_E: Coatomer 98.7 2E-07 4.4E-12 91.4 12.5 149 397-554 110-264 (290)
102 cd05804 StaR_like StaR_like; a 98.7 2.5E-05 5.4E-10 80.9 28.4 60 497-556 269-337 (355)
103 KOG0548 Molecular co-chaperone 98.6 7.8E-05 1.7E-09 75.6 28.8 401 129-556 10-456 (539)
104 cd05804 StaR_like StaR_like; a 98.6 0.00012 2.7E-09 75.7 31.3 190 331-522 122-337 (355)
105 TIGR03302 OM_YfiO outer membra 98.5 7.7E-06 1.7E-10 79.1 19.1 179 357-555 32-232 (235)
106 PRK04841 transcriptional regul 98.5 0.00024 5.2E-09 83.6 34.2 86 400-485 664-756 (903)
107 PRK15359 type III secretion sy 98.5 3.1E-06 6.8E-11 74.2 13.1 122 410-537 14-137 (144)
108 PRK10370 formate-dependent nit 98.5 6.9E-06 1.5E-10 76.2 16.0 147 396-556 23-174 (198)
109 KOG4340 Uncharacterized conser 98.5 4.1E-05 8.8E-10 71.4 20.5 302 225-552 13-336 (459)
110 KOG1070 rRNA processing protei 98.4 1.9E-05 4.2E-10 88.0 20.9 199 356-558 1456-1666(1710)
111 PF12854 PPR_1: PPR repeat 98.4 3.1E-07 6.8E-12 57.2 4.3 33 186-218 2-34 (34)
112 PF12854 PPR_1: PPR repeat 98.4 3E-07 6.5E-12 57.3 4.2 33 252-284 2-34 (34)
113 PLN02789 farnesyltranstransfer 98.4 5.7E-05 1.2E-09 75.4 22.2 211 338-552 52-299 (320)
114 PRK15359 type III secretion sy 98.4 1.3E-05 2.9E-10 70.2 14.7 99 456-556 22-122 (144)
115 PRK15363 pathogenicity island 98.4 7.3E-06 1.6E-10 70.5 12.4 119 460-601 35-155 (157)
116 KOG1125 TPR repeat-containing 98.3 3.7E-05 8E-10 78.5 18.2 218 230-452 293-526 (579)
117 KOG1128 Uncharacterized conser 98.3 2E-05 4.4E-10 82.4 16.8 189 353-556 393-583 (777)
118 KOG1128 Uncharacterized conser 98.3 1.5E-05 3.2E-10 83.4 15.5 210 328-555 403-616 (777)
119 COG5010 TadD Flp pilus assembl 98.3 4.6E-05 9.9E-10 70.4 16.1 134 421-556 63-198 (257)
120 PRK10370 formate-dependent nit 98.3 7.6E-05 1.7E-09 69.2 18.0 157 365-532 23-184 (198)
121 PRK15179 Vi polysaccharide bio 98.3 5.1E-05 1.1E-09 83.5 19.4 141 387-531 84-227 (694)
122 KOG1070 rRNA processing protei 98.3 5.3E-05 1.1E-09 84.7 19.1 208 48-256 1447-1668(1710)
123 KOG0624 dsRNA-activated protei 98.2 0.0028 6.2E-08 60.7 27.2 303 62-388 41-371 (504)
124 TIGR03302 OM_YfiO outer membra 98.2 7.7E-05 1.7E-09 72.1 16.9 180 323-523 33-234 (235)
125 PRK15179 Vi polysaccharide bio 98.1 0.00024 5.2E-09 78.3 20.7 142 354-499 82-229 (694)
126 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 52.9 4.4 35 122-156 1-35 (35)
127 TIGR02552 LcrH_SycD type III s 98.1 2.8E-05 6E-10 67.7 10.9 96 460-555 17-114 (135)
128 COG5010 TadD Flp pilus assembl 98.1 0.00024 5.1E-09 65.8 16.6 151 362-515 70-225 (257)
129 KOG2053 Mitochondrial inherita 98.1 0.027 5.9E-07 61.2 35.7 52 267-318 200-256 (932)
130 PLN02789 farnesyltranstransfer 98.1 0.0015 3.2E-08 65.3 23.5 226 295-526 44-307 (320)
131 PRK14720 transcript cleavage f 98.1 0.00066 1.4E-08 75.6 22.7 168 220-417 29-197 (906)
132 TIGR00756 PPR pentatricopeptid 98.0 7.9E-06 1.7E-10 51.7 4.4 35 390-424 1-35 (35)
133 KOG2053 Mitochondrial inherita 98.0 0.034 7.4E-07 60.5 37.5 159 391-553 438-606 (932)
134 COG4783 Putative Zn-dependent 98.0 0.00071 1.5E-08 68.2 19.9 145 390-556 307-455 (484)
135 KOG3081 Vesicle coat complex C 98.0 0.0021 4.6E-08 59.6 20.8 115 435-553 148-269 (299)
136 COG4783 Putative Zn-dependent 98.0 0.00064 1.4E-08 68.5 18.5 120 433-554 315-436 (484)
137 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 50.3 4.3 34 121-154 1-34 (34)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00016 3.5E-09 73.6 13.4 120 429-553 174-295 (395)
139 TIGR02552 LcrH_SycD type III s 97.9 0.00023 5E-09 61.8 12.8 114 411-528 5-121 (135)
140 PF13812 PPR_3: Pentatricopept 97.9 2E-05 4.2E-10 49.5 4.3 34 222-255 1-34 (34)
141 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00041 8.8E-09 70.7 15.6 126 360-489 171-297 (395)
142 KOG3060 Uncharacterized conser 97.9 0.0031 6.8E-08 58.1 19.1 164 364-530 58-229 (289)
143 PF09976 TPR_21: Tetratricopep 97.8 0.00046 1E-08 60.7 13.3 114 437-551 24-143 (145)
144 KOG3081 Vesicle coat complex C 97.8 0.0023 4.9E-08 59.5 17.7 188 363-557 46-238 (299)
145 PRK14720 transcript cleavage f 97.8 0.0052 1.1E-07 68.8 23.4 232 120-400 30-268 (906)
146 PF13414 TPR_11: TPR repeat; P 97.7 7.1E-05 1.5E-09 56.2 5.7 64 491-554 2-66 (69)
147 cd00189 TPR Tetratricopeptide 97.7 0.00026 5.5E-09 56.7 9.3 92 463-554 3-96 (100)
148 KOG1914 mRNA cleavage and poly 97.7 0.081 1.8E-06 54.4 36.1 442 89-552 19-536 (656)
149 PF01535 PPR: PPR repeat; Int 97.7 4.7E-05 1E-09 46.5 3.5 31 122-152 1-31 (31)
150 PLN03088 SGT1, suppressor of 97.7 0.00042 9.1E-09 70.9 12.4 85 470-554 12-98 (356)
151 PF09976 TPR_21: Tetratricopep 97.7 0.0027 5.8E-08 55.8 15.7 124 392-519 15-145 (145)
152 PF04840 Vps16_C: Vps16, C-ter 97.7 0.061 1.3E-06 53.7 26.8 107 363-486 182-288 (319)
153 PF12895 Apc3: Anaphase-promot 97.7 4.7E-05 1E-09 59.7 3.8 77 474-551 3-83 (84)
154 KOG3060 Uncharacterized conser 97.6 0.0034 7.3E-08 57.9 15.8 161 392-556 55-221 (289)
155 PF13432 TPR_16: Tetratricopep 97.6 0.00012 2.6E-09 54.1 5.5 58 498-555 3-60 (65)
156 PF01535 PPR: PPR repeat; Int 97.6 6.4E-05 1.4E-09 45.9 3.2 31 223-253 1-31 (31)
157 PRK15331 chaperone protein Sic 97.6 0.0017 3.7E-08 56.4 12.8 100 455-554 31-133 (165)
158 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00074 1.6E-08 57.0 10.7 92 464-555 6-105 (119)
159 KOG0553 TPR repeat-containing 97.6 0.00098 2.1E-08 63.1 11.8 104 434-540 91-197 (304)
160 PF14938 SNAP: Soluble NSF att 97.5 0.09 1.9E-06 52.1 25.8 96 392-487 158-264 (282)
161 PF14559 TPR_19: Tetratricopep 97.5 0.00026 5.7E-09 52.8 5.9 52 503-554 2-53 (68)
162 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 54.9 11.5 103 428-530 6-114 (119)
163 KOG0550 Molecular chaperone (D 97.5 0.0021 4.6E-08 63.3 13.0 262 266-555 58-350 (486)
164 PF05843 Suf: Suppressor of fo 97.5 0.0038 8.2E-08 61.6 15.2 134 390-526 2-141 (280)
165 KOG1538 Uncharacterized conser 97.4 0.027 5.8E-07 58.8 20.8 201 227-492 603-806 (1081)
166 PF07079 DUF1347: Protein of u 97.4 0.18 3.8E-06 51.0 31.5 134 70-204 17-180 (549)
167 PRK10153 DNA-binding transcrip 97.4 0.0057 1.2E-07 65.5 16.7 139 385-554 333-481 (517)
168 PRK02603 photosystem I assembl 97.4 0.0015 3.3E-08 59.3 10.7 81 461-541 36-121 (172)
169 KOG0553 TPR repeat-containing 97.4 0.0011 2.3E-08 62.9 9.3 88 467-554 88-177 (304)
170 CHL00033 ycf3 photosystem I as 97.4 0.0016 3.5E-08 59.0 10.3 93 460-552 35-139 (168)
171 PF13371 TPR_9: Tetratricopept 97.4 0.00051 1.1E-08 52.1 6.0 58 499-556 2-59 (73)
172 PRK02603 photosystem I assembl 97.3 0.0039 8.5E-08 56.6 12.8 131 388-541 34-166 (172)
173 PLN03088 SGT1, suppressor of 97.3 0.0026 5.6E-08 65.2 12.6 104 434-539 12-117 (356)
174 PF13431 TPR_17: Tetratricopep 97.3 0.00019 4.2E-09 44.6 2.3 33 515-547 2-34 (34)
175 cd00189 TPR Tetratricopeptide 97.2 0.0028 6E-08 50.4 9.5 59 392-451 3-61 (100)
176 PF13432 TPR_16: Tetratricopep 97.2 0.0011 2.4E-08 48.8 6.3 61 466-526 3-65 (65)
177 PF04840 Vps16_C: Vps16, C-ter 97.2 0.3 6.4E-06 48.9 25.8 110 256-381 176-285 (319)
178 PF12895 Apc3: Anaphase-promot 97.2 0.0013 2.7E-08 51.5 6.6 79 402-484 2-82 (84)
179 COG4235 Cytochrome c biogenesi 97.2 0.015 3.2E-07 55.7 14.8 102 457-558 153-259 (287)
180 PF14938 SNAP: Soluble NSF att 97.2 0.076 1.6E-06 52.6 20.5 99 291-389 158-268 (282)
181 CHL00033 ycf3 photosystem I as 97.1 0.02 4.3E-07 51.8 15.0 81 389-471 35-117 (168)
182 COG4700 Uncharacterized protei 97.1 0.051 1.1E-06 47.8 15.9 131 420-554 85-221 (251)
183 PF07079 DUF1347: Protein of u 97.0 0.48 1E-05 48.0 33.1 428 100-553 16-522 (549)
184 PRK10153 DNA-binding transcrip 96.9 0.027 5.8E-07 60.5 15.8 49 508-556 400-450 (517)
185 PRK15363 pathogenicity island 96.9 0.022 4.8E-07 49.4 12.3 95 360-455 37-134 (157)
186 KOG2041 WD40 repeat protein [G 96.9 0.73 1.6E-05 49.1 25.1 228 60-316 693-951 (1189)
187 PF13281 DUF4071: Domain of un 96.9 0.1 2.2E-06 52.6 18.5 161 363-526 146-339 (374)
188 PF13414 TPR_11: TPR repeat; P 96.9 0.0023 5E-08 47.8 5.5 64 460-523 3-69 (69)
189 KOG2280 Vacuolar assembly/sort 96.9 0.94 2E-05 48.9 30.5 114 252-380 679-792 (829)
190 PF10037 MRP-S27: Mitochondria 96.8 0.02 4.3E-07 58.9 13.2 59 226-284 107-165 (429)
191 PRK10803 tol-pal system protei 96.8 0.0064 1.4E-07 58.9 9.2 94 461-554 144-245 (263)
192 PRK10866 outer membrane biogen 96.8 0.11 2.4E-06 49.9 17.6 55 499-553 182-239 (243)
193 PF14559 TPR_19: Tetratricopep 96.8 0.0011 2.5E-08 49.3 3.2 49 436-486 3-51 (68)
194 KOG1538 Uncharacterized conser 96.8 0.18 4E-06 52.9 19.4 101 299-412 727-827 (1081)
195 PF08579 RPM2: Mitochondrial r 96.8 0.015 3.3E-07 46.7 9.3 80 124-203 28-116 (120)
196 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.0052 1.1E-07 62.4 8.5 65 491-555 74-141 (453)
197 PF05843 Suf: Suppressor of fo 96.8 0.021 4.5E-07 56.4 12.6 127 123-251 3-136 (280)
198 KOG0543 FKBP-type peptidyl-pro 96.8 0.011 2.3E-07 58.8 10.2 109 467-601 215-340 (397)
199 PF12688 TPR_5: Tetratrico pep 96.8 0.034 7.4E-07 46.4 11.8 91 395-485 7-100 (120)
200 KOG2796 Uncharacterized conser 96.7 0.11 2.3E-06 48.5 15.6 139 290-430 179-325 (366)
201 KOG1130 Predicted G-alpha GTPa 96.7 0.008 1.7E-07 59.2 8.9 129 425-553 196-342 (639)
202 PF08579 RPM2: Mitochondrial r 96.7 0.032 6.8E-07 44.9 10.6 79 393-472 29-116 (120)
203 PF13428 TPR_14: Tetratricopep 96.7 0.003 6.5E-08 42.1 4.3 42 493-534 2-43 (44)
204 COG3898 Uncharacterized membra 96.6 0.82 1.8E-05 45.4 27.2 240 300-553 132-390 (531)
205 PRK10866 outer membrane biogen 96.6 0.21 4.6E-06 48.0 18.1 54 396-449 182-237 (243)
206 PF06239 ECSIT: Evolutionarily 96.6 0.026 5.7E-07 51.3 10.8 90 386-476 44-154 (228)
207 KOG2280 Vacuolar assembly/sort 96.6 1.5 3.3E-05 47.4 29.6 328 125-484 441-794 (829)
208 PF12688 TPR_5: Tetratrico pep 96.5 0.025 5.3E-07 47.2 9.5 86 467-552 8-101 (120)
209 PF10037 MRP-S27: Mitochondria 96.5 0.026 5.6E-07 58.1 11.6 76 195-270 107-186 (429)
210 KOG1258 mRNA processing protei 96.4 1.7 3.6E-05 46.0 28.7 181 357-540 296-489 (577)
211 KOG0550 Molecular chaperone (D 96.4 0.75 1.6E-05 46.1 19.8 21 529-549 417-437 (486)
212 KOG2041 WD40 repeat protein [G 96.4 1.8 4E-05 46.2 24.3 115 188-313 689-821 (1189)
213 PF06239 ECSIT: Evolutionarily 96.3 0.033 7.2E-07 50.7 9.5 88 119-206 45-153 (228)
214 PF03704 BTAD: Bacterial trans 96.3 0.065 1.4E-06 47.1 11.4 61 494-554 64-124 (146)
215 COG4700 Uncharacterized protei 96.2 0.39 8.3E-06 42.5 15.2 120 356-480 87-213 (251)
216 KOG2796 Uncharacterized conser 96.2 0.8 1.7E-05 42.9 17.8 165 361-525 139-319 (366)
217 PF13371 TPR_9: Tetratricopept 96.2 0.015 3.2E-07 43.9 5.8 64 468-531 3-68 (73)
218 PF13424 TPR_12: Tetratricopep 96.1 0.0074 1.6E-07 46.3 4.1 60 494-553 7-73 (78)
219 PRK10803 tol-pal system protei 96.0 0.1 2.3E-06 50.5 12.4 34 494-527 219-252 (263)
220 KOG2114 Vacuolar assembly/sort 96.0 3.2 7E-05 45.6 29.6 179 92-286 336-519 (933)
221 COG5107 RNA14 Pre-mRNA 3'-end 95.8 2.5 5.4E-05 43.0 31.1 134 388-525 396-535 (660)
222 PF09205 DUF1955: Domain of un 95.8 0.61 1.3E-05 38.8 13.4 139 401-558 14-152 (161)
223 KOG4555 TPR repeat-containing 95.7 0.072 1.6E-06 43.9 7.9 90 468-557 51-146 (175)
224 PF13424 TPR_12: Tetratricopep 95.5 0.022 4.8E-07 43.6 4.3 60 462-521 7-75 (78)
225 COG3898 Uncharacterized membra 95.5 3.1 6.7E-05 41.5 25.0 250 235-496 133-399 (531)
226 PF13525 YfiO: Outer membrane 95.4 0.64 1.4E-05 43.4 14.8 50 498-547 147-199 (203)
227 PF13525 YfiO: Outer membrane 95.3 1.8 4E-05 40.3 17.5 141 392-554 8-169 (203)
228 PF12921 ATP13: Mitochondrial 95.1 0.3 6.6E-06 41.2 10.2 50 419-468 47-96 (126)
229 COG0457 NrfG FOG: TPR repeat [ 95.1 3 6.6E-05 39.2 25.3 193 358-554 59-264 (291)
230 PRK11906 transcriptional regul 95.0 1.6 3.4E-05 45.1 16.7 158 390-550 252-431 (458)
231 COG4235 Cytochrome c biogenesi 94.9 0.73 1.6E-05 44.4 13.4 105 421-527 153-262 (287)
232 COG3118 Thioredoxin domain-con 94.9 0.67 1.4E-05 44.5 13.0 120 433-555 143-265 (304)
233 PF13512 TPR_18: Tetratricopep 94.9 0.43 9.4E-06 40.7 10.6 85 470-554 20-127 (142)
234 KOG0543 FKBP-type peptidyl-pro 94.9 0.23 5.1E-06 49.6 10.3 137 396-554 215-354 (397)
235 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.18 3.8E-06 51.7 9.3 62 460-521 75-141 (453)
236 KOG1130 Predicted G-alpha GTPa 94.7 0.25 5.3E-06 49.2 9.9 51 130-181 26-80 (639)
237 PF03704 BTAD: Bacterial trans 94.7 0.32 7E-06 42.6 10.0 70 392-462 65-138 (146)
238 smart00299 CLH Clathrin heavy 94.5 2.6 5.5E-05 36.5 15.2 123 161-298 12-135 (140)
239 PF13281 DUF4071: Domain of un 94.4 2.9 6.3E-05 42.4 16.8 33 301-333 195-227 (374)
240 KOG1585 Protein required for f 94.3 4.6 9.9E-05 37.7 16.3 195 328-549 36-250 (308)
241 KOG1920 IkappaB kinase complex 94.3 4.4 9.5E-05 46.5 19.3 30 254-284 788-819 (1265)
242 COG3118 Thioredoxin domain-con 94.2 3.5 7.6E-05 39.8 16.0 155 396-552 141-299 (304)
243 PF04184 ST7: ST7 protein; In 94.2 2.5 5.5E-05 43.8 15.9 55 395-450 265-321 (539)
244 PF04184 ST7: ST7 protein; In 94.1 1.1 2.4E-05 46.3 13.2 147 401-562 180-331 (539)
245 PF10300 DUF3808: Protein of u 94.1 2.5 5.4E-05 45.2 16.8 159 393-554 192-375 (468)
246 PF04053 Coatomer_WDAD: Coatom 94.1 0.62 1.3E-05 48.9 12.0 133 398-556 270-403 (443)
247 PF07719 TPR_2: Tetratricopept 94.1 0.13 2.9E-06 31.5 4.6 33 493-525 2-34 (34)
248 PF00515 TPR_1: Tetratricopept 94.1 0.097 2.1E-06 32.3 3.9 32 493-524 2-33 (34)
249 PRK11906 transcriptional regul 94.1 0.7 1.5E-05 47.6 11.9 116 439-554 273-400 (458)
250 KOG3941 Intermediate in Toll s 93.9 0.66 1.4E-05 43.9 10.2 101 376-477 52-175 (406)
251 PF04053 Coatomer_WDAD: Coatom 93.8 1.9 4.1E-05 45.4 15.0 152 203-383 273-427 (443)
252 PF08631 SPO22: Meiosis protei 93.8 7.5 0.00016 38.3 20.1 65 359-424 122-192 (278)
253 COG0457 NrfG FOG: TPR repeat [ 93.7 6.1 0.00013 37.0 24.7 195 326-524 62-268 (291)
254 KOG1941 Acetylcholine receptor 93.6 0.62 1.3E-05 45.7 9.9 162 391-552 85-272 (518)
255 KOG1258 mRNA processing protei 93.5 12 0.00026 39.9 28.3 392 24-436 46-487 (577)
256 smart00299 CLH Clathrin heavy 93.1 3.5 7.5E-05 35.7 13.5 43 327-370 11-53 (140)
257 KOG3941 Intermediate in Toll s 93.1 0.57 1.2E-05 44.4 8.5 99 108-206 52-173 (406)
258 PF12921 ATP13: Mitochondrial 93.1 0.95 2.1E-05 38.2 9.3 83 423-523 1-83 (126)
259 PRK15331 chaperone protein Sic 92.6 2.2 4.7E-05 37.5 11.0 83 369-452 48-133 (165)
260 KOG2610 Uncharacterized conser 92.6 1.1 2.3E-05 43.7 9.8 159 401-562 115-283 (491)
261 PRK09687 putative lyase; Provi 92.6 11 0.00025 37.0 25.5 122 189-316 140-262 (280)
262 KOG1920 IkappaB kinase complex 92.5 25 0.00054 40.8 22.9 152 104-283 894-1052(1265)
263 PF10300 DUF3808: Protein of u 92.4 2.1 4.5E-05 45.7 13.0 26 326-351 191-216 (468)
264 KOG4234 TPR repeat-containing 92.3 0.74 1.6E-05 41.3 7.7 90 468-557 103-199 (271)
265 COG4785 NlpI Lipoprotein NlpI, 92.3 4.4 9.5E-05 37.1 12.6 180 370-556 77-267 (297)
266 COG1729 Uncharacterized protei 92.3 0.88 1.9E-05 43.3 8.8 80 401-482 153-237 (262)
267 COG1729 Uncharacterized protei 92.2 1.1 2.3E-05 42.8 9.3 90 462-554 144-243 (262)
268 PF13512 TPR_18: Tetratricopep 92.1 4 8.7E-05 35.0 11.7 114 397-527 18-134 (142)
269 COG4105 ComL DNA uptake lipopr 92.0 11 0.00023 35.9 15.4 56 395-451 173-231 (254)
270 PF13176 TPR_7: Tetratricopept 91.9 0.27 5.8E-06 30.8 3.6 26 528-553 1-26 (36)
271 KOG2610 Uncharacterized conser 91.6 4.1 8.9E-05 39.8 12.4 180 369-552 114-312 (491)
272 KOG4555 TPR repeat-containing 91.2 0.58 1.2E-05 38.8 5.5 55 500-554 51-105 (175)
273 PRK09687 putative lyase; Provi 91.0 17 0.00037 35.8 23.6 17 357-373 141-157 (280)
274 KOG2114 Vacuolar assembly/sort 90.9 9.3 0.0002 42.3 15.6 109 401-517 380-488 (933)
275 PF13181 TPR_8: Tetratricopept 90.6 0.45 9.7E-06 29.2 3.6 31 494-524 3-33 (34)
276 PF04097 Nic96: Nup93/Nic96; 90.5 21 0.00047 39.7 18.9 17 536-552 515-531 (613)
277 PF07035 Mic1: Colon cancer-as 90.0 14 0.00029 32.9 13.8 134 410-556 15-150 (167)
278 PF04097 Nic96: Nup93/Nic96; 89.7 30 0.00066 38.5 19.2 21 470-490 515-535 (613)
279 PF09613 HrpB1_HrpK: Bacterial 89.5 1.5 3.2E-05 38.3 6.9 53 504-556 22-74 (160)
280 PF13176 TPR_7: Tetratricopept 89.3 0.63 1.4E-05 29.1 3.5 28 494-521 1-28 (36)
281 PF09205 DUF1955: Domain of un 89.2 12 0.00026 31.4 11.6 139 299-456 13-151 (161)
282 KOG4648 Uncharacterized conser 88.9 0.69 1.5E-05 45.0 5.0 113 431-550 104-219 (536)
283 TIGR02561 HrpB1_HrpK type III 88.8 1.7 3.7E-05 37.3 6.6 54 504-557 22-75 (153)
284 PF13428 TPR_14: Tetratricopep 88.6 1.5 3.2E-05 28.9 5.1 32 391-424 3-34 (44)
285 PF00637 Clathrin: Region in C 88.4 0.16 3.4E-06 44.4 0.4 82 162-246 13-94 (143)
286 PF02259 FAT: FAT domain; Int 88.4 19 0.00041 36.9 15.9 68 490-557 144-215 (352)
287 KOG3364 Membrane protein invol 88.2 5.3 0.00011 33.6 8.9 61 494-554 34-99 (149)
288 KOG2066 Vacuolar assembly/sort 87.9 49 0.0011 36.7 25.7 121 192-316 393-533 (846)
289 PF07035 Mic1: Colon cancer-as 87.7 20 0.00042 31.9 15.4 39 178-216 16-54 (167)
290 COG1747 Uncharacterized N-term 87.6 40 0.00087 35.4 19.7 155 291-452 69-233 (711)
291 COG3629 DnrI DNA-binding trans 87.3 2.5 5.3E-05 41.0 7.7 62 493-554 154-215 (280)
292 PF00515 TPR_1: Tetratricopept 87.3 1.3 2.7E-05 27.1 3.9 32 390-423 2-33 (34)
293 COG4105 ComL DNA uptake lipopr 87.0 29 0.00062 33.1 20.1 56 499-554 174-232 (254)
294 PF02259 FAT: FAT domain; Int 86.9 39 0.00084 34.5 22.1 148 388-538 145-304 (352)
295 PF14853 Fis1_TPR_C: Fis1 C-te 86.8 3.9 8.5E-05 28.3 6.4 50 529-604 4-53 (53)
296 KOG1941 Acetylcholine receptor 86.7 16 0.00035 36.3 12.7 161 290-450 85-272 (518)
297 PF07721 TPR_4: Tetratricopept 85.3 1.1 2.3E-05 25.6 2.6 24 527-550 2-25 (26)
298 KOG4648 Uncharacterized conser 85.2 2.8 6.1E-05 40.9 6.7 94 396-493 104-199 (536)
299 KOG1585 Protein required for f 85.1 34 0.00074 32.2 18.5 199 294-515 37-250 (308)
300 PF10602 RPN7: 26S proteasome 84.7 13 0.00027 33.7 10.6 60 392-451 39-100 (177)
301 COG3629 DnrI DNA-binding trans 84.7 9.2 0.0002 37.2 10.1 59 359-417 154-215 (280)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 84.7 6.3 0.00014 31.0 7.1 63 404-468 22-84 (103)
303 PF02284 COX5A: Cytochrome c o 84.2 5.1 0.00011 31.8 6.6 60 407-468 28-87 (108)
304 COG4649 Uncharacterized protei 84.2 18 0.00039 32.1 10.4 25 195-219 171-195 (221)
305 PRK10941 hypothetical protein; 83.7 7.3 0.00016 37.9 9.1 61 494-554 183-243 (269)
306 KOG0276 Vesicle coat complex C 83.7 17 0.00037 38.8 11.9 149 203-383 598-746 (794)
307 PRK11619 lytic murein transgly 83.6 81 0.0018 35.3 34.0 132 202-339 44-179 (644)
308 COG2976 Uncharacterized protei 83.2 36 0.00078 31.0 13.5 114 407-524 70-191 (207)
309 PF07719 TPR_2: Tetratricopept 83.1 2.6 5.6E-05 25.6 3.9 27 391-417 3-29 (34)
310 PF13170 DUF4003: Protein of u 82.9 25 0.00054 34.9 12.6 64 406-470 160-227 (297)
311 TIGR02508 type_III_yscG type I 82.8 12 0.00026 29.6 8.0 52 265-318 47-98 (115)
312 KOG1464 COP9 signalosome, subu 82.6 46 0.001 31.8 17.2 216 294-514 71-325 (440)
313 PF10602 RPN7: 26S proteasome 82.2 16 0.00035 33.1 10.2 93 359-451 37-140 (177)
314 PF13374 TPR_10: Tetratricopep 82.2 2.2 4.7E-05 27.4 3.6 28 527-554 3-30 (42)
315 PF14853 Fis1_TPR_C: Fis1 C-te 82.2 2.8 6.1E-05 29.0 4.0 34 497-530 6-39 (53)
316 COG3947 Response regulator con 81.4 55 0.0012 31.8 15.7 59 496-554 283-341 (361)
317 PF13174 TPR_6: Tetratricopept 81.4 2.8 6E-05 25.2 3.6 26 499-524 7-32 (33)
318 KOG4570 Uncharacterized conser 80.9 12 0.00026 36.5 8.9 96 353-452 59-163 (418)
319 PF04910 Tcf25: Transcriptiona 80.6 68 0.0015 32.9 15.2 64 491-554 99-167 (360)
320 PRK13800 putative oxidoreducta 80.3 1.3E+02 0.0028 35.5 25.5 239 211-473 624-865 (897)
321 PF09613 HrpB1_HrpK: Bacterial 79.9 37 0.00079 29.9 11.0 87 434-523 20-108 (160)
322 PF13431 TPR_17: Tetratricopep 79.8 1.6 3.5E-05 26.9 2.0 30 50-79 4-33 (34)
323 PF13181 TPR_8: Tetratricopept 79.7 3.5 7.6E-05 25.0 3.6 28 527-554 2-29 (34)
324 PF13174 TPR_6: Tetratricopept 79.6 2.1 4.6E-05 25.7 2.6 28 528-555 2-29 (33)
325 PF11207 DUF2989: Protein of u 79.3 9.6 0.00021 34.8 7.5 70 477-546 123-198 (203)
326 smart00028 TPR Tetratricopepti 78.7 4.4 9.4E-05 23.4 3.9 31 494-524 3-33 (34)
327 PRK13800 putative oxidoreducta 78.4 1.5E+02 0.0032 35.0 24.1 255 277-553 624-879 (897)
328 COG5107 RNA14 Pre-mRNA 3'-end 77.7 92 0.002 32.3 32.8 421 18-452 37-530 (660)
329 KOG4570 Uncharacterized conser 77.7 14 0.00031 35.9 8.5 99 185-284 58-162 (418)
330 PF00637 Clathrin: Region in C 77.3 1.3 2.9E-05 38.5 1.6 84 328-414 12-95 (143)
331 KOG2062 26S proteasome regulat 77.3 1.2E+02 0.0027 33.5 30.9 26 159-184 213-238 (929)
332 TIGR02508 type_III_yscG type I 77.3 35 0.00076 27.2 9.4 62 365-429 46-107 (115)
333 cd00923 Cyt_c_Oxidase_Va Cytoc 76.8 17 0.00036 28.7 7.1 46 138-183 24-69 (103)
334 PF13374 TPR_10: Tetratricopep 76.1 5.8 0.00013 25.3 4.1 28 390-417 3-30 (42)
335 KOG4279 Serine/threonine prote 75.7 38 0.00082 37.2 11.7 184 291-526 204-400 (1226)
336 TIGR02561 HrpB1_HrpK type III 75.0 31 0.00067 29.8 8.9 65 435-502 21-87 (153)
337 PF04190 DUF410: Protein of un 74.2 63 0.0014 31.4 12.4 53 189-241 88-140 (260)
338 KOG1586 Protein required for f 74.0 80 0.0017 29.7 12.3 21 335-355 166-186 (288)
339 PRK15180 Vi polysaccharide bio 73.2 23 0.00049 36.7 9.0 120 402-525 302-424 (831)
340 KOG0276 Vesicle coat complex C 73.2 59 0.0013 34.9 12.1 98 102-216 649-746 (794)
341 COG1747 Uncharacterized N-term 72.9 1.3E+02 0.0029 31.8 20.2 190 357-553 65-286 (711)
342 COG4649 Uncharacterized protei 72.7 70 0.0015 28.5 15.9 121 399-520 68-195 (221)
343 KOG2066 Vacuolar assembly/sort 72.5 1.7E+02 0.0036 32.8 26.1 149 66-222 363-536 (846)
344 PF08631 SPO22: Meiosis protei 72.1 1E+02 0.0023 30.2 24.8 19 433-451 255-273 (278)
345 KOG4642 Chaperone-dependent E3 71.7 11 0.00024 35.2 5.9 82 473-554 23-106 (284)
346 KOG1498 26S proteasome regulat 71.7 1.2E+02 0.0026 30.9 14.4 110 464-577 135-263 (439)
347 PF02284 COX5A: Cytochrome c o 71.6 25 0.00055 28.1 7.0 47 486-532 39-85 (108)
348 KOG1550 Extracellular protein 71.3 1.4E+02 0.0031 32.8 15.7 151 401-558 261-429 (552)
349 PRK12798 chemotaxis protein; R 71.1 1.3E+02 0.0029 31.0 21.8 180 371-553 125-322 (421)
350 PF06552 TOM20_plant: Plant sp 70.9 14 0.0003 33.1 6.2 46 508-553 51-100 (186)
351 PRK15180 Vi polysaccharide bio 69.9 65 0.0014 33.5 11.3 139 436-578 301-441 (831)
352 KOG1308 Hsp70-interacting prot 69.8 3.4 7.4E-05 40.6 2.4 87 472-558 126-214 (377)
353 PF11207 DUF2989: Protein of u 69.7 39 0.00085 31.0 8.9 73 406-479 123-197 (203)
354 PF14561 TPR_20: Tetratricopep 69.1 9.9 0.00022 29.8 4.5 45 512-556 8-52 (90)
355 COG4455 ImpE Protein of avirul 68.8 18 0.00038 33.4 6.4 62 465-526 6-69 (273)
356 PHA02875 ankyrin repeat protei 68.1 1.4E+02 0.003 31.3 14.6 126 148-282 22-157 (413)
357 KOG0376 Serine-threonine phosp 67.5 11 0.00025 38.9 5.7 86 468-553 12-99 (476)
358 KOG0403 Neoplastic transformat 67.2 1.6E+02 0.0035 30.5 19.2 61 292-353 513-573 (645)
359 PF09670 Cas_Cas02710: CRISPR- 66.1 94 0.002 32.2 12.2 122 398-521 140-270 (379)
360 PF13170 DUF4003: Protein of u 66.1 1.5E+02 0.0032 29.6 15.1 54 405-458 78-137 (297)
361 KOG4234 TPR repeat-containing 65.3 72 0.0016 29.2 9.4 68 466-533 140-209 (271)
362 COG4785 NlpI Lipoprotein NlpI, 64.7 1.2E+02 0.0026 28.2 18.0 61 90-150 99-162 (297)
363 KOG1586 Protein required for f 64.4 1.3E+02 0.0028 28.4 16.1 20 506-525 209-228 (288)
364 TIGR03504 FimV_Cterm FimV C-te 64.0 13 0.00027 24.6 3.5 27 530-556 3-29 (44)
365 KOG2063 Vacuolar assembly/sort 63.8 1.5E+02 0.0032 34.3 13.7 132 123-269 506-638 (877)
366 PF13934 ELYS: Nuclear pore co 63.4 79 0.0017 30.0 10.2 152 4-167 26-183 (226)
367 smart00386 HAT HAT (Half-A-TPR 63.1 12 0.00026 22.1 3.2 30 506-535 1-30 (33)
368 KOG0292 Vesicle coat complex C 62.3 20 0.00043 40.0 6.5 119 402-552 606-724 (1202)
369 PF11768 DUF3312: Protein of u 60.6 88 0.0019 33.5 10.6 57 362-418 412-473 (545)
370 KOG1464 COP9 signalosome, subu 60.5 1.6E+02 0.0035 28.3 15.3 180 300-479 39-250 (440)
371 KOG3364 Membrane protein invol 60.3 53 0.0011 27.9 7.2 34 495-528 74-107 (149)
372 smart00028 TPR Tetratricopepti 59.9 19 0.00042 20.3 3.9 27 391-417 3-29 (34)
373 PF10366 Vps39_1: Vacuolar sor 59.5 89 0.0019 25.5 8.5 27 224-250 41-67 (108)
374 KOG2063 Vacuolar assembly/sort 59.3 1.7E+02 0.0037 33.8 13.3 28 290-317 506-533 (877)
375 KOG2471 TPR repeat-containing 59.1 1.4E+02 0.003 31.5 11.3 102 366-470 248-379 (696)
376 PF09477 Type_III_YscG: Bacter 58.5 99 0.0021 25.1 8.5 80 236-318 20-99 (116)
377 PF13929 mRNA_stabil: mRNA sta 58.2 1.7E+02 0.0036 28.7 11.2 111 106-216 144-263 (292)
378 cd00280 TRFH Telomeric Repeat 57.3 46 0.00099 29.9 6.7 39 497-536 116-154 (200)
379 PF10579 Rapsyn_N: Rapsyn N-te 56.9 24 0.00052 26.7 4.3 47 436-482 18-65 (80)
380 TIGR03504 FimV_Cterm FimV C-te 56.6 26 0.00056 23.2 4.0 25 395-419 5-29 (44)
381 COG2976 Uncharacterized protei 56.4 1.6E+02 0.0035 26.9 13.3 88 332-419 98-189 (207)
382 KOG4507 Uncharacterized conser 56.2 37 0.00081 36.2 7.0 100 435-537 618-721 (886)
383 PF14427 Pput2613-deam: Pput_2 56.1 40 0.00086 27.1 5.5 59 621-680 44-102 (118)
384 KOG4077 Cytochrome c oxidase, 55.9 79 0.0017 26.5 7.4 60 407-468 67-126 (149)
385 PF12862 Apc5: Anaphase-promot 55.5 35 0.00075 27.0 5.5 52 503-554 9-69 (94)
386 PRK11619 lytic murein transgly 55.4 3.5E+02 0.0075 30.5 37.3 427 101-559 44-509 (644)
387 PF10366 Vps39_1: Vacuolar sor 55.0 1.2E+02 0.0025 24.8 9.4 27 290-316 41-67 (108)
388 PF13762 MNE1: Mitochondrial s 54.9 66 0.0014 27.9 7.3 51 119-169 77-128 (145)
389 PF13762 MNE1: Mitochondrial s 54.5 1.1E+02 0.0023 26.6 8.5 76 261-336 43-128 (145)
390 PF07163 Pex26: Pex26 protein; 53.7 1.3E+02 0.0029 29.1 9.6 87 396-485 90-183 (309)
391 PF15161 Neuropep_like: Neurop 53.7 5.7 0.00012 27.0 0.6 16 652-668 12-27 (65)
392 KOG0545 Aryl-hydrocarbon recep 52.9 76 0.0017 30.0 7.7 88 467-554 185-292 (329)
393 cd08819 CARD_MDA5_2 Caspase ac 52.9 1E+02 0.0022 24.0 7.1 65 176-242 22-86 (88)
394 PF07720 TPR_3: Tetratricopept 52.8 36 0.00078 21.3 4.0 30 495-524 4-35 (36)
395 PF14863 Alkyl_sulf_dimr: Alky 52.4 50 0.0011 28.5 6.2 64 477-543 58-121 (141)
396 PF09986 DUF2225: Uncharacteri 52.2 89 0.0019 29.3 8.4 63 494-556 120-195 (214)
397 KOG0403 Neoplastic transformat 51.1 3.1E+02 0.0067 28.6 17.7 58 362-419 513-573 (645)
398 KOG3824 Huntingtin interacting 50.2 37 0.0008 33.1 5.5 48 503-550 127-174 (472)
399 KOG4718 Non-SMC (structural ma 49.9 4.9 0.00011 36.2 -0.3 10 652-661 180-189 (235)
400 KOG3807 Predicted membrane pro 49.2 1.1E+02 0.0023 30.3 8.4 52 395-448 281-335 (556)
401 PF09477 Type_III_YscG: Bacter 48.9 1.5E+02 0.0031 24.2 9.2 86 339-428 22-107 (116)
402 PF11525 CopK: Copper resistan 48.8 6.5 0.00014 28.3 0.3 20 672-691 8-27 (73)
403 KOG2034 Vacuolar sorting prote 48.8 4.7E+02 0.01 30.0 20.5 23 291-313 533-555 (911)
404 cd08819 CARD_MDA5_2 Caspase ac 48.1 1.2E+02 0.0026 23.6 6.8 38 269-307 48-85 (88)
405 COG5159 RPN6 26S proteasome re 46.2 2.9E+02 0.0064 26.9 13.9 50 396-445 10-66 (421)
406 KOG2422 Uncharacterized conser 46.1 2.2E+02 0.0047 30.8 10.6 48 503-550 353-402 (665)
407 PF10579 Rapsyn_N: Rapsyn N-te 45.9 38 0.00083 25.6 3.9 45 504-548 18-65 (80)
408 PF11846 DUF3366: Domain of un 45.5 77 0.0017 29.1 7.0 35 489-523 141-175 (193)
409 PRK13342 recombination factor 45.2 3.9E+02 0.0085 28.1 15.0 48 391-438 229-279 (413)
410 KOG0551 Hsp90 co-chaperone CNS 44.9 82 0.0018 31.3 6.9 91 462-552 83-179 (390)
411 PF07163 Pex26: Pex26 protein; 44.3 1.3E+02 0.0027 29.3 7.9 53 193-245 120-181 (309)
412 PF04090 RNA_pol_I_TF: RNA pol 43.3 1.4E+02 0.0031 27.4 8.0 90 493-582 42-132 (199)
413 PF14561 TPR_20: Tetratricopep 42.2 1.7E+02 0.0036 23.0 7.8 62 491-552 21-85 (90)
414 PF04190 DUF410: Protein of un 42.2 3.3E+02 0.0072 26.4 15.1 83 356-453 88-170 (260)
415 PF06552 TOM20_plant: Plant sp 41.9 85 0.0018 28.3 6.1 30 406-437 52-82 (186)
416 KOG0890 Protein kinase of the 41.6 9.3E+02 0.02 31.4 33.4 310 227-557 1388-1733(2382)
417 cd00280 TRFH Telomeric Repeat 41.2 1.3E+02 0.0029 27.1 7.1 67 440-506 85-157 (200)
418 COG0735 Fur Fe2+/Zn2+ uptake r 40.9 51 0.0011 28.6 4.7 65 6-74 4-70 (145)
419 COG4455 ImpE Protein of avirul 40.8 3.1E+02 0.0068 25.7 12.4 128 392-527 4-140 (273)
420 PF11663 Toxin_YhaV: Toxin wit 40.7 36 0.00077 28.8 3.4 32 133-166 107-138 (140)
421 PF13934 ELYS: Nuclear pore co 40.7 3.2E+02 0.007 25.8 13.2 106 392-506 79-186 (226)
422 PF10345 Cohesin_load: Cohesin 40.7 5.6E+02 0.012 28.6 37.1 184 60-249 31-252 (608)
423 PF08225 Antimicrobial19: Pseu 40.4 19 0.00042 19.0 1.1 12 657-668 10-21 (23)
424 PF06957 COPI_C: Coatomer (COP 40.0 90 0.002 32.5 6.9 44 482-525 288-333 (422)
425 COG5431 Uncharacterized metal- 39.5 8.9 0.00019 30.1 -0.2 12 684-695 46-57 (117)
426 PF11846 DUF3366: Domain of un 39.5 95 0.0021 28.5 6.6 51 436-486 120-170 (193)
427 KOG2034 Vacuolar sorting prote 39.1 6.6E+02 0.014 28.9 24.5 137 225-376 507-646 (911)
428 COG4976 Predicted methyltransf 38.8 44 0.00095 31.2 4.0 57 470-526 5-63 (287)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 38.7 1.7E+02 0.0037 24.6 7.4 42 510-551 81-124 (126)
430 PRK10564 maltose regulon perip 37.9 47 0.001 32.5 4.3 43 220-262 254-297 (303)
431 TIGR02270 conserved hypothetic 36.7 5.2E+02 0.011 27.1 25.7 172 128-313 45-216 (410)
432 PF11848 DUF3368: Domain of un 36.5 1.3E+02 0.0029 20.2 5.2 33 400-432 13-45 (48)
433 PF08424 NRDE-2: NRDE-2, neces 36.5 4.6E+02 0.01 26.4 14.5 114 406-522 48-184 (321)
434 COG2912 Uncharacterized conser 36.4 2.4E+02 0.0051 27.4 8.6 59 496-554 185-243 (269)
435 KOG1524 WD40 repeat-containing 36.0 1.7E+02 0.0037 31.0 8.0 88 460-550 573-668 (737)
436 PF11663 Toxin_YhaV: Toxin wit 35.7 42 0.00091 28.4 3.1 33 400-434 106-138 (140)
437 PF15469 Sec5: Exocyst complex 35.6 3.4E+02 0.0073 24.6 11.2 25 429-453 91-115 (182)
438 PF11848 DUF3368: Domain of un 35.6 1.1E+02 0.0024 20.6 4.6 35 231-265 11-45 (48)
439 cd08326 CARD_CASP9 Caspase act 35.6 72 0.0016 24.6 4.2 57 81-137 21-77 (84)
440 KOG1550 Extracellular protein 35.1 6.5E+02 0.014 27.7 22.8 246 300-555 261-538 (552)
441 PF14689 SPOB_a: Sensor_kinase 33.9 86 0.0019 22.5 4.1 25 428-452 27-51 (62)
442 PF08424 NRDE-2: NRDE-2, neces 33.6 4.5E+02 0.0097 26.5 10.8 64 491-554 64-130 (321)
443 cd08326 CARD_CASP9 Caspase act 33.5 2.3E+02 0.0049 21.9 6.7 40 268-307 41-80 (84)
444 PRK10564 maltose regulon perip 33.2 81 0.0018 31.0 5.0 41 391-431 259-299 (303)
445 KOG4077 Cytochrome c oxidase, 33.2 1.6E+02 0.0034 24.8 5.8 27 60-86 85-111 (149)
446 KOG0991 Replication factor C, 32.9 4.4E+02 0.0095 25.1 9.6 46 211-257 228-273 (333)
447 KOG0686 COP9 signalosome, subu 32.5 5.9E+02 0.013 26.4 11.8 156 60-219 151-332 (466)
448 COG3947 Response regulator con 32.4 1.2E+02 0.0027 29.5 5.9 66 193-258 281-354 (361)
449 KOG4814 Uncharacterized conser 32.1 3.4E+02 0.0073 29.8 9.5 85 471-555 365-457 (872)
450 PF11838 ERAP1_C: ERAP1-like C 32.1 5.2E+02 0.011 25.7 21.7 98 438-535 144-245 (324)
451 COG5071 RPN5 26S proteasome re 32.0 5.1E+02 0.011 25.5 10.3 115 464-578 135-264 (439)
452 PF07575 Nucleopor_Nup85: Nup8 31.8 7.4E+02 0.016 27.4 21.7 215 332-571 306-538 (566)
453 COG4976 Predicted methyltransf 31.5 72 0.0016 29.9 4.1 56 502-557 5-60 (287)
454 KOG2168 Cullins [Cell cycle co 30.9 8.7E+02 0.019 27.9 17.8 86 467-553 629-734 (835)
455 PF00244 14-3-3: 14-3-3 protei 30.9 4.5E+02 0.0099 25.1 9.8 56 294-349 7-63 (236)
456 KOG4521 Nuclear pore complex, 30.7 1E+03 0.022 28.6 14.6 21 364-384 926-946 (1480)
457 KOG3507 DNA-directed RNA polym 30.5 15 0.00033 25.4 -0.2 11 652-662 19-29 (62)
458 COG4259 Uncharacterized protei 30.0 1.6E+02 0.0034 23.5 5.1 41 512-552 57-98 (121)
459 PF10345 Cohesin_load: Cohesin 29.5 8.3E+02 0.018 27.3 35.6 185 21-217 28-251 (608)
460 PF04090 RNA_pol_I_TF: RNA pol 29.5 4.6E+02 0.0099 24.2 9.6 35 390-425 42-76 (199)
461 PF01147 Crust_neurohorm: Crus 29.5 16 0.00035 27.1 -0.2 14 651-664 18-31 (73)
462 PF08967 DUF1884: Domain of un 28.4 67 0.0015 24.3 2.8 26 586-611 8-33 (85)
463 PRK11639 zinc uptake transcrip 28.4 3.4E+02 0.0074 24.3 8.0 63 210-272 13-75 (169)
464 KOG0890 Protein kinase of the 28.3 1.5E+03 0.032 29.8 25.7 114 196-315 1388-1510(2382)
465 TIGR02710 CRISPR-associated pr 28.2 6.8E+02 0.015 25.9 10.8 27 398-424 139-165 (380)
466 PF14689 SPOB_a: Sensor_kinase 28.1 91 0.002 22.4 3.5 24 394-417 28-51 (62)
467 PF10475 DUF2450: Protein of u 27.9 3.9E+02 0.0084 26.5 9.1 50 265-316 106-155 (291)
468 PF11768 DUF3312: Protein of u 27.8 5.9E+02 0.013 27.6 10.5 55 195-249 412-471 (545)
469 PF14376 Haem_bd: Haem-binding 27.6 18 0.00039 31.1 -0.3 8 654-661 42-49 (137)
470 PF05734 DUF832: Herpesvirus p 27.4 2.9E+02 0.0064 26.1 7.4 31 490-520 13-43 (228)
471 KOG2396 HAT (Half-A-TPR) repea 27.2 8E+02 0.017 26.3 32.0 90 463-552 463-556 (568)
472 KOG2659 LisH motif-containing 27.0 4.2E+02 0.0091 25.0 8.3 91 392-485 29-128 (228)
473 KOG3824 Huntingtin interacting 26.4 86 0.0019 30.7 3.8 59 471-529 127-187 (472)
474 COG5108 RPO41 Mitochondrial DN 26.1 3.5E+02 0.0076 29.8 8.5 46 394-439 33-80 (1117)
475 cd08332 CARD_CASP2 Caspase act 25.9 1.4E+02 0.003 23.4 4.4 47 89-135 33-79 (90)
476 PF04034 DUF367: Domain of unk 25.7 4.1E+02 0.0089 22.4 7.3 56 460-515 66-122 (127)
477 PF14669 Asp_Glu_race_2: Putat 25.5 5.3E+02 0.012 23.7 13.3 175 184-383 1-206 (233)
478 smart00777 Mad3_BUB1_I Mad3/BU 25.4 2.5E+02 0.0055 23.6 6.1 40 511-550 82-123 (125)
479 COG0790 FOG: TPR repeat, SEL1 25.3 6.5E+02 0.014 24.6 18.9 77 478-557 173-268 (292)
480 COG0735 Fur Fe2+/Zn2+ uptake r 25.1 4.4E+02 0.0095 22.9 7.8 50 222-271 20-69 (145)
481 PF08311 Mad3_BUB1_I: Mad3/BUB 24.8 4.2E+02 0.0091 22.3 8.7 44 238-281 79-123 (126)
482 PF11838 ERAP1_C: ERAP1-like C 24.5 7.1E+02 0.015 24.8 20.7 61 357-417 168-229 (324)
483 KOG4507 Uncharacterized conser 23.8 4.3E+02 0.0093 28.8 8.5 133 421-556 568-706 (886)
484 KOG3506 40S ribosomal protein 23.7 34 0.00074 23.5 0.5 9 685-693 14-22 (56)
485 COG5108 RPO41 Mitochondrial DN 23.5 4.6E+02 0.0099 29.0 8.7 25 227-251 33-57 (1117)
486 PRK10941 hypothetical protein; 23.5 7E+02 0.015 24.4 10.2 57 393-451 185-242 (269)
487 PF00322 Endothelin: Endotheli 23.0 36 0.00079 20.2 0.5 8 688-695 4-11 (31)
488 PRK11639 zinc uptake transcrip 23.0 3.5E+02 0.0075 24.2 7.0 33 126-158 30-62 (169)
489 PF12968 DUF3856: Domain of Un 22.8 4.6E+02 0.0099 22.0 9.7 22 531-552 105-126 (144)
490 smart00638 LPD_N Lipoprotein N 22.7 1.1E+03 0.023 26.2 22.5 45 271-316 323-368 (574)
491 KOG4642 Chaperone-dependent E3 22.5 6.9E+02 0.015 23.9 10.2 80 370-451 22-105 (284)
492 PF11817 Foie-gras_1: Foie gra 22.3 2.8E+02 0.0061 26.7 6.8 17 497-513 223-239 (247)
493 PF05119 Terminase_4: Phage te 22.3 1.9E+02 0.0041 22.9 4.8 34 579-612 57-90 (100)
494 PF12069 DUF3549: Protein of u 22.3 8.3E+02 0.018 24.8 12.2 85 364-451 172-257 (340)
495 KOG0686 COP9 signalosome, subu 22.2 9E+02 0.02 25.2 11.5 59 359-417 151-215 (466)
496 PF09797 NatB_MDM20: N-acetylt 22.2 2.8E+02 0.0061 28.5 7.3 61 492-552 180-243 (365)
497 TIGR02710 CRISPR-associated pr 22.1 8.9E+02 0.019 25.1 12.0 18 368-385 140-157 (380)
498 PF10255 Paf67: RNA polymerase 21.4 6.2E+02 0.013 26.4 9.2 55 362-416 126-191 (404)
499 PHA02875 ankyrin repeat protei 21.2 9.4E+02 0.02 25.0 18.3 21 64-84 37-57 (413)
500 PF03128 CXCXC: CXCXC repeat; 20.8 51 0.0011 15.7 0.7 9 685-693 4-12 (14)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-133 Score=1144.02 Aligned_cols=685 Identities=34% Similarity=0.660 Sum_probs=648.7
Q ss_pred hhHHHHHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHH
Q 005454 4 KHKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLF 82 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~ 82 (696)
..++.++++.|...|++|+..+|..++++|. ..+....+.+++..+.+.++.++ .++|+|+.+|++.|+++.|.++|
T Consensus 67 ~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f 144 (857)
T PLN03077 67 LEQALKLLESMQELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144 (857)
T ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHH
Confidence 4567788899999999999999999999998 66778888888888888877766 77777777777777777777777
Q ss_pred ccCCCCCcc----------------------------------------------------------------------h
Q 005454 83 DKMPLRDII----------------------------------------------------------------------S 92 (696)
Q Consensus 83 ~~~~~~~~~----------------------------------------------------------------------~ 92 (696)
++|++||++ +
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 224 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence 777654333 3
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+|+||.+|+++|++++|.++|++|+.+|.++||+||.+|++.|++++|+++|.+|.+.|+.||..||+.++.+|++.|++
T Consensus 225 ~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~ 304 (857)
T PLN03077 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304 (857)
T ss_pred HhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Confidence 45566677777888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..||+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHHHHHH-----------------------------------HHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 005454 253 LNPDEVTVSNILG-----------------------------------ACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297 (696)
Q Consensus 253 ~~p~~~t~~~ll~-----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 297 (696)
+.||..||+.++. +|+++|++++|.++|++|.++|+++|+++|.+
T Consensus 385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~ 464 (857)
T PLN03077 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAG 464 (857)
T ss_pred CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 9998887766655 48889999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|+++|+.++|+++|++|.. +++||..||..++.+|++.|+++.+.++|..+.+.|+.+|..++|+|+++|+++|++++|
T Consensus 465 ~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 465 LRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred HHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 9999999999999999986 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.
T Consensus 544 ~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 544 WNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999778999
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
|+..+|++|+++|++.|++++|.+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|..|+++|+
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccch
Q 005454 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQE 617 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~ 617 (696)
..|+|++|.++++.|+++|++|.||+|||++++++|.|.+||.+||+.++||..|++|..+|++.||+||+..++ +++|
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~ 781 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIE 781 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988 5588
Q ss_pred hHHhhhhhhhhHHHHHHhhhccCCCCCCcEEEEecccccCchhHHHHHHhhhcCceEEEecCCccccccCCccCCCC
Q 005454 618 EEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKD 694 (696)
Q Consensus 618 ~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~ 694 (696)
++|+..|++||||||+|||||+||+| +||||+||||||+|||+++||||+++||||||||++|||||+||+|||||
T Consensus 782 ~~k~~~~~~hse~la~a~~l~~~~~~-~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 782 VSKDDIFCGHSERLAIAFGLINTVPG-MPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHhccHHHHHHHhhhcCCCC-CeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-123 Score=1040.79 Aligned_cols=609 Identities=34% Similarity=0.598 Sum_probs=575.2
Q ss_pred CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccC-CCcc-cHHHHHHHHHHccCChHHHHHHHccCC----CCCcch
Q 005454 19 QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYE-PNTT-FLHNRLLHFYAKSGKLFYARDLFDKMP----LRDIIS 92 (696)
Q Consensus 19 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~ 92 (696)
..++..+++.++.++. ..++...|+.++..+...+ +.++ .+|+.++.+|++.++++.|.+++..|. .||+.+
T Consensus 83 ~~~~~~~~~~~i~~l~--~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 83 IRKSGVSLCSQIEKLV--ACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred CCCCceeHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 3445568999999999 7889999999999888765 5667 999999999999999999999999986 479999
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
||.|+++|+++|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999888888888888887777777777665
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHH
Q 005454 253 LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS 332 (696)
Q Consensus 253 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 332 (696)
+.| |..||++++.+
T Consensus 321 ~~p------------------------------------------------------------------d~~t~~~ll~a 334 (697)
T PLN03081 321 VSI------------------------------------------------------------------DQFTFSIMIRI 334 (697)
T ss_pred CCC------------------------------------------------------------------CHHHHHHHHHH
Confidence 554 44455555555
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
|++.|+++.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 55556666666666667777777888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS 492 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~ 492 (696)
++|.+.|+.||.+||+.++.+|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|++.|++++|.+++++++.+|+.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~ 494 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEE
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKV 572 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~ 572 (696)
.+|++|+.+|+.+|+++.|+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.||+|||++++++
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~ 574 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQD 574 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccchhHHhhhhhhhhHHHHHHhhhccCCCCCCcEEEEec
Q 005454 573 HKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKN 652 (696)
Q Consensus 573 ~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn 652 (696)
|.|.+||.+||+.++||..+.++..+|++.||+||+.+++|++++++|+..|++||||||+|||||++|+| +||||+||
T Consensus 575 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~-~~i~i~kn 653 (697)
T PLN03081 575 HSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEW-TPLQITQS 653 (697)
T ss_pred EEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCC-CeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ccccCchhHHHHHHhhhcCceEEEecCCccccccCCccCCCCCC
Q 005454 653 IRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCSCKDNW 696 (696)
Q Consensus 653 ~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~~~w 696 (696)
||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 654 lr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 654 HRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-75 Score=666.01 Aligned_cols=646 Identities=26% Similarity=0.373 Sum_probs=558.4
Q ss_pred CCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHHccCC----CCCcch
Q 005454 18 GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLFDKMP----LRDIIS 92 (696)
Q Consensus 18 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~ 92 (696)
..+|+..+++.++.+++ ..+....|..++..+...|++++ .+|..++..|.+.+.++.|.+++..+. .+++..
T Consensus 46 ~~~~~~~~~n~~i~~l~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 123 (857)
T PLN03077 46 SSSSSTHDSNSQLRALC--SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123 (857)
T ss_pred hcccchhhHHHHHHHHH--hCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchH
Confidence 35678889999999999 88899999999999999999888 999999999999999999999998765 358899
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+|+||++|+++|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||++++.+|+..+++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
+.+.+++..+.+.|+.||..++|+|+++|+++|++++|.++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCcchHHHHH-----------------------------------HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHH
Q 005454 253 LNPDEVTVSNIL-----------------------------------GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVG 297 (696)
Q Consensus 253 ~~p~~~t~~~ll-----------------------------------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 297 (696)
+.||..||+.++ .+|+++|++++|.++|++|.++|.++||++|.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 877766665555 458889999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
.++|++|.++|+++||+||.+|++.|+.++|+++|++|.. +++||..||+.++.+|++.|.++.+.+++..+.+ .|+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCC
Confidence 9999999999999999999999999999999999999986 5999999999999999999999999999999998 4999
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-PINAGPYIMLSNMY 536 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~ 536 (696)
|+..++++|+++|.++|++++|.++|+.+ +||..+|++++.+|.++|+.++|.++|++|.+.+ .+|..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 8999999999999999999999999999999866 44788999999999
Q ss_pred hhcCChhHHHHHHHHhh-hCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCcccccc
Q 005454 537 AACGRWEDVASIRSSMK-SKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDT 615 (696)
Q Consensus 537 ~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~ 615 (696)
++.|++++|.++|+.|. +.|+.|.....- ..+..+... . .+++..+.+++.+..||...|..-+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~----~lv~~l~r~----G-------~~~eA~~~~~~m~~~pd~~~~~aLl 664 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYA----CVVDLLGRA----G-------KLTEAYNFINKMPITPDPAVWGALL 664 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHH----HHHHHHHhC----C-------CHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 99999999999999998 678766432110 000001000 0 1233333444456788876652111
Q ss_pred chhHHhhhhhhhh---HHHHHHhhhccCCCCCCcEEE-Eecc-cccCchhHHHHHHhhh--------cCceEEEecCCcc
Q 005454 616 QEEEKVKSICYHS---EKLALAYCLIKKPHGVTPIRI-MKNI-RVCGDCHLFMKFASDI--------IGRTIILRDSNRF 682 (696)
Q Consensus 616 ~~~~~~~~~~~hs---e~la~~~~~~~~~~~~~~~~~-~kn~-~~c~~ch~~~k~~s~~--------~~r~i~~rd~~~~ 682 (696)
.-.. ..... |+.| --++...|......+ +-|+ --.++...+.+....+ .|+.+|.- .+..
T Consensus 665 ~ac~----~~~~~e~~e~~a--~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~-~~~~ 737 (857)
T PLN03077 665 NACR----IHRHVELGELAA--QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV-KGKV 737 (857)
T ss_pred HHHH----HcCChHHHHHHH--HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE-CCEE
Confidence 1000 00001 1111 112222333122332 2343 3457788888887755 56666543 3688
Q ss_pred ccccCCccC
Q 005454 683 HHFVGGNCS 691 (696)
Q Consensus 683 h~f~~g~cs 691 (696)
|-|..|--|
T Consensus 738 ~~f~~~d~~ 746 (857)
T PLN03077 738 HAFLTDDES 746 (857)
T ss_pred EEEecCCCC
Confidence 999766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.2e-66 Score=578.62 Aligned_cols=500 Identities=18% Similarity=0.236 Sum_probs=464.6
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCc-----chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDI-----ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 134 (696)
..|..++..|++.|++++|.++|+.|..++. ..++.++..|.+.|.+++|.++|+.|+.||..+|+.+|.+|++.
T Consensus 371 ~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 371 PEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred hHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 7788899999999999999999999987654 45567788899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHH
Q 005454 135 GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLF 214 (696)
Q Consensus 135 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 214 (696)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||++|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHH--cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---
Q 005454 215 DRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQL--LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--- 285 (696)
Q Consensus 215 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--- 285 (696)
+.|.. ||.++||.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++|.++|+.|.+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99964 8999999999999999999999999999986 68999999999999999999999999999999985
Q ss_pred -CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 286 -KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 286 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|++|
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
|++|+++|++++|.++|++|. .||+.+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l 770 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999999999999995 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----ccC-------------------CHHHHHHHHHhCC---CCCCHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLG----RSS-------------------DVDKAVDLIKSLP---HKPNSLI 494 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~~---~~p~~~~ 494 (696)
++|.++|..|.+. |+.||..+|+++++++. +++ ..++|..+|++|. ..||..+
T Consensus 771 e~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 771 DVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 9999999999885 99999999999998743 222 2367888998874 4699999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCc
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFEL-EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAA 562 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 562 (696)
|+.++.++...+..+.+..+++.+... .+++..+|..|++.+.+. .++|..++++|...|+.+...
T Consensus 850 ~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 850 LSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999998888888888888888776433 366778899999987332 368999999999999987654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-62 Score=551.56 Aligned_cols=499 Identities=15% Similarity=0.198 Sum_probs=469.7
Q ss_pred CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCC-cc-cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHH
Q 005454 19 QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPN-TT-FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNAL 96 (696)
Q Consensus 19 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 96 (696)
-.++...|..++..++ ..|+...|+.++..|...|+. ++ ..++.++..|.+.|.+++|.++|+.|..||..+|+.|
T Consensus 366 ~~~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 4456678888999998 788999999999999999864 44 7788999999999999999999999999999999999
Q ss_pred HHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 97 LSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
|.+|++.|+++.|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 999999999999999999996 4799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC------CCChhHHHHHHHHHHhCCCchHHHHHHH
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN------NRNLVSWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999995 3899999999999999999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD 322 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 322 (696)
+|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999998 46899999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMING 398 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~ 398 (696)
..+|++++.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||..+|++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------CCcHHHHHHHHHHhHHhhC
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-----------------------ADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-----------------------~g~~~~a~~~~~~m~~~~~ 455 (696)
|++.|+.++|.++|++|.+.|+.||..+|+.++..|.+ .+..++|..+|++|.+. |
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~-G 842 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA-G 842 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC-C
Confidence 99999999999999999999999999999999876542 12346799999999985 9
Q ss_pred CCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
+.||..+|+.++..+.+.+..+.+..+++.|.. .|+..+|++|+.++... .++|..+++.|.+.+
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999998865 47789999999998433 468999999999987
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.9e-59 Score=519.90 Aligned_cols=446 Identities=17% Similarity=0.295 Sum_probs=425.1
Q ss_pred hhHHHHHHHHHHHcC-CCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHH
Q 005454 4 KHKLRQAIDTLYSRG-QAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDL 81 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~ 81 (696)
..++.++|+.|...+ +.||..+|+.++.+|+ ..++...+.+++..+.+.|+.++ .+||.|+.+|++.|+++.|.++
T Consensus 103 ~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~--~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 103 HREALELFEILEAGCPFTLPASTYDALVEACI--ALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHH
Confidence 456778888998764 8899999999999999 77889999999999999999999 9999999999999999999999
Q ss_pred HccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc
Q 005454 82 FDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMP----IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157 (696)
Q Consensus 82 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 157 (696)
|++|+.||+++||++|.+|++.|++++|.++|++|. .||..+|+.++.++++.|..+.+.+++..|.+.|+.||..
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 999999999999999999999999999999999995 5789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC----CCChhHHHHHHHHHH
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN----NRNLVSWNLMISGYL 233 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 233 (696)
+|++++.+|++.|++++|.++|+.|. ++|..+||+|+.+|++.|+.++|.++|++|. .||..||++++.+|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999984 5799999999999999999999999999995 489999999999999
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
+.|++++|.+++..|.+.|+.||..+++.++.+|+++|++++|.++|+.|.++|+++||+||.+|++.|+.++|+++|++
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHH-hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-CCCchH
Q 005454 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVV-LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-TRNVVS 391 (696)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~ 391 (696)
|.+.|+.||..||+.++.+|+..|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .|+..+
T Consensus 417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~ 496 (697)
T PLN03081 417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNM 496 (697)
T ss_pred HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHH
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999997 689999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+. |+.+
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 99999999999999999999999976 5565 579999999999999999999999999875 7653
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=4.3e-37 Score=252.65 Aligned_cols=106 Identities=63% Similarity=1.130 Sum_probs=98.5
Q ss_pred ceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccccccchhHH--------hhhhhhhhHHHHH
Q 005454 562 AYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEK--------VKSICYHSEKLAL 633 (696)
Q Consensus 562 ~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 633 (696)
|+||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899987 9999999999987 566788889999999999998888766 5689999999999
Q ss_pred HhhhccCCCCCCcEEEEecc-cccCchhHHHHHHhhhcCceEEEecCCcccccc
Q 005454 634 AYCLIKKPHGVTPIRIMKNI-RVCGDCHLFMKFASDIIGRTIILRDSNRFHHFV 686 (696)
Q Consensus 634 ~~~~~~~~~~~~~~~~~kn~-~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 686 (696)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~-------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT-------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce-------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999987 899999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.8e-31 Score=310.08 Aligned_cols=539 Identities=13% Similarity=0.103 Sum_probs=343.9
Q ss_pred hHHHHHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc
Q 005454 5 HKLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84 (696)
Q Consensus 5 ~~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (696)
..+.+.++...+.. +.+...+..+...+. ..++...+......+....+.....+..+...|.+.|++++|.+.|++
T Consensus 312 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 312 EQAYQYLNQILKYA-PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555444332 233444555555555 667777777777777766655446777777888888888888888877
Q ss_pred CCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch
Q 005454 85 MPL---RDIISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158 (696)
Q Consensus 85 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 158 (696)
+.. .+...+..+...+...|++++|.+.|+.+... +...+..++..+.+.|++++|+++++++... .+++..+
T Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 467 (899)
T TIGR02917 389 ATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASL 467 (899)
T ss_pred HHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHH
Confidence 654 24556667777777777777777777766432 2344556666777777777777777777653 3445556
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 005454 159 HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKN 235 (696)
Q Consensus 159 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 235 (696)
+..+...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|.+.|+++.. .+..++..+...+.+.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 546 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRT 546 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHc
Confidence 6667777777777777777777776654 23455566667777777777777777776643 3455666677777777
Q ss_pred CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHH
Q 005454 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 236 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (696)
|+.++|...++++...+ +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|...|++++|+..|+
T Consensus 547 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 625 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625 (899)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777766543 33445566666667777777777777766652 345567777777777777777777777
Q ss_pred HhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCc
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNV 389 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~ 389 (696)
++.+.. +.+...+..+...+...|+++.|..++..+.+... .+...+..++..+...|++++|..+++.+.. .+.
T Consensus 626 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 703 (899)
T TIGR02917 626 KLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAA 703 (899)
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCh
Confidence 766532 22344555666666667777777777777666543 2455666666677777777777777666652 344
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 469 (696)
..+..+...+...|++++|++.|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..+...
T Consensus 704 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~ 779 (899)
T TIGR02917 704 LGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAEL 779 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 55666666666677777777777766663 34445555666666666666666666666665 234455666666666
Q ss_pred HhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
|.+.|++++|.+.|+++.. +++..+++.+...+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665422 2345566666666666666 556666666666666666666666666666666666666
Q ss_pred HHHHhhhCC
Q 005454 548 IRSSMKSKN 556 (696)
Q Consensus 548 ~~~~m~~~~ 556 (696)
+++++.+.+
T Consensus 859 ~~~~a~~~~ 867 (899)
T TIGR02917 859 LLRKAVNIA 867 (899)
T ss_pred HHHHHHhhC
Confidence 666665544
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.3e-31 Score=307.25 Aligned_cols=509 Identities=14% Similarity=0.092 Sum_probs=394.6
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALF 113 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f 113 (696)
..++...|...+...+...+.....+..+...+.+.|++++|...++.+... +...++.+...|.+.|++++|.+.|
T Consensus 307 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 386 (899)
T TIGR02917 307 QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386 (899)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5678888888888887776655567777888888888888888888877643 5567788888888888888888888
Q ss_pred hcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc
Q 005454 114 DKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN 190 (696)
Q Consensus 114 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 190 (696)
+++.. .+...|..+...+...|++++|++.|+++.+.... +......++..+.+.|+++.|..++..+.+.. +.+
T Consensus 387 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 464 (899)
T TIGR02917 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDN 464 (899)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence 87653 24556777778888888888888888888765321 22345556677788888888888888887653 446
Q ss_pred hhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005454 191 VFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267 (696)
Q Consensus 191 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 267 (696)
..++..+...|...|++++|.+.|+++.. .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLY 543 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 77788888888888888888888887654 345567778888888888888888888887754 34566777788888
Q ss_pred HhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHH
Q 005454 268 FQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 344 (696)
.+.|+.++|...|+++.. .+...+..++..|...|++++|+.+++++... .+.+..++..+..++...|+++.|..
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887753 34566777888888888888888888888764 34456677888888888888888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 005454 345 VHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLK 421 (696)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 421 (696)
.+..+.+... .+...+..+...|.+.|++++|..+|+++. +.+..+|..++..+...|++++|..+++.+.+.+ +
T Consensus 623 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 700 (899)
T TIGR02917 623 SFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-P 700 (899)
T ss_pred HHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 8888887654 356677788888888888888888888765 3456688888888888888888888888888764 4
Q ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 005454 422 PDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLL 499 (696)
Q Consensus 422 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll 499 (696)
++...+..+...+...|++++|...|+.+... .|+...+..++.++.+.|++++|.+.++++.. +.+..++..+.
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55667777778888888888888888888753 45557777788888888888888888876532 34566778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
..|...|+.++|...++++++..|+++..+..++.+|...|+ ++|..++++..+.
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 888888888888888888888888888888888888888888 7788888877654
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=2.8e-22 Score=235.96 Aligned_cols=538 Identities=12% Similarity=0.068 Sum_probs=306.0
Q ss_pred hhHHHHHHHHHHHcCCCC-ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccH----------------HHHHH
Q 005454 4 KHKLRQAIDTLYSRGQAA-TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFL----------------HNRLL 66 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~li 66 (696)
...+++.|+.+.. +.| ++..+..+.+.+. ..++.++|.....+..+..|..... ...+.
T Consensus 44 ~d~a~~~l~kl~~--~~p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 44 EDLVRQSLYRLEL--IDPNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred hHHHHHHHHHHHc--cCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 3445666665543 334 4556666666666 7788888888888888888766522 13334
Q ss_pred HHHHccCChHHHHHHHccCCCCCcchHH----HHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhH
Q 005454 67 HFYAKSGKLFYARDLFDKMPLRDIISWN----ALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSRE 139 (696)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~ 139 (696)
..+.+.|++++|.+.|+.....++.... .........|+.++|++.|+++.. | +...+..+...+...|++++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHH
Confidence 4678889999999998888764332221 111122245888889988888864 3 45567788888888899999
Q ss_pred HHHHHHHhHHCCC------------------C--------------CCcchHH---------------------HHHHHH
Q 005454 140 ALQVFSRMQKDRF------------------E--------------PTDYTHV---------------------SALNAC 166 (696)
Q Consensus 140 A~~l~~~m~~~g~------------------~--------------p~~~t~~---------------------~ll~~~ 166 (696)
|++.|+++.+... . |+..... .....+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 9998888754310 0 0000000 001122
Q ss_pred HccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CCh---hHHHH------------HH
Q 005454 167 AQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNL---VSWNL------------MI 229 (696)
Q Consensus 167 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li 229 (696)
...|++++|...++..++... .+...+..|...|.+.|++++|+..|++..+ |+. ..|.. ..
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 344555555555555555432 2444555555555555555555555555433 111 11111 12
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhH
Q 005454 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEED 306 (696)
Q Consensus 230 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 306 (696)
..+.+.|++++|+..|++..+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...|. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 23445555555555555555432 12233344445555555555555555555442 22333444444442 234455
Q ss_pred HHHHHHHhccCCCC--------CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 307 ALILFNEMLSEDVR--------PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 307 A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
|+..++.+...... .....+......+...|++++|...++.+++..+. +..++..+...|.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 55544443221000 00011222334455567777777777777665543 4555666677777777777777
Q ss_pred HHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHhcCCcHHHHHHH
Q 005454 379 TVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF---------TFVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 379 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~~~~a~~~ 446 (696)
..|+++. ..+...+..+...+...|+.++|+..++++......++.. .+..+...+...|+.++|..+
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 7776653 2233444444444556666666666666543322112111 122334455666777777666
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
++. .+++...+..+.+.|.+.|++++|++.+++.. ..| +...+..+...+...|+.++|+..++++++..|+
T Consensus 596 l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 596 LRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 541 13344556667777778888888887777643 234 4557777777777788888888888887777777
Q ss_pred CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 525 NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 525 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++..+..++.++...|++++|.++++++...
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 7777777788888888888888888777654
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=1.8e-21 Score=229.16 Aligned_cols=506 Identities=12% Similarity=0.055 Sum_probs=369.1
Q ss_pred chhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCcc------h-----------------HH
Q 005454 38 DVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDII------S-----------------WN 94 (696)
Q Consensus 38 ~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~-----------------~~ 94 (696)
.++...|+..+..++...|....++..+...+...|+.++|...++++...... . +.
T Consensus 160 ~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 160 PAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 456666777777776666554456666777777777777777777766432110 0 11
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC--CCcc-hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccC
Q 005454 95 ALLSAHARSGSVQDLRALFDKMPI--RDSV-SYNTAIAGFANKGFSREALQVFSRMQKDRFEP-TDYTHVSALNACAQLL 170 (696)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~ 170 (696)
..+..+-....++.|...++.... .|.. ........+...|++++|+..|++..+. .| +...+..+..++.+.|
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g 317 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQG 317 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 111111111223334444433211 0111 1123345677889999999999999875 45 5567788888999999
Q ss_pred ChHHHHHHHHHHHHcCCCCc-hhHH------------HHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 005454 171 DLRRGKQIHGKIVVGNLGGN-VFVR------------NALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLK 234 (696)
Q Consensus 171 ~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 234 (696)
++++|...+...++...... ...+ ..+...+.+.|++++|+..|++... .+...+..+...+..
T Consensus 318 ~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~ 397 (1157)
T PRK11447 318 DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA 397 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999988754322 1111 2234567899999999999999876 355678889999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCC------------hhHHHHHHHHHHhcC
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD------------NVCWTTMIVGYTQNG 302 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g 302 (696)
.|++++|++.|++..+.. +.+...+..+...|. .++.++|..+++.+.... ...+..+...+...|
T Consensus 398 ~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g 475 (1157)
T PRK11447 398 RKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQG 475 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC
Confidence 999999999999998753 233445566666664 567899999998876432 223555677888999
Q ss_pred ChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHH
Q 005454 303 KEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (696)
++++|++.|++.++. .|+ ...+..+...+...|+.++|...++.+++.... +......+...+.+.|+.++|...+
T Consensus 476 ~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l 552 (1157)
T PRK11447 476 KWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHL 552 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999874 454 455667788899999999999999999886543 4555555666678899999999999
Q ss_pred hcCCCC----Cch---------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 382 NMMPTR----NVV---------SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 382 ~~~~~~----~~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
+.+... +.. .+..+...+...|+.++|+.+++. .+++...+..+...+.+.|++++|+..|+
T Consensus 553 ~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~ 627 (1157)
T PRK11447 553 NTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQ 627 (1157)
T ss_pred HhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 988642 111 123456678899999999999872 34555677778888999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+.+. -+.+...+..++.+|...|++++|.+.++.... .| +..++..+..++...|++++|...++++++..|+++
T Consensus 628 ~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 628 RVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 99863 344578889999999999999999999998654 34 455777888889999999999999999999877655
Q ss_pred c------hHHHHHHHHhhcCChhHHHHHHHHhh-hCCC
Q 005454 527 G------PYIMLSNMYAACGRWEDVASIRSSMK-SKNV 557 (696)
Q Consensus 527 ~------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~ 557 (696)
. .+..++.++...|++++|...+++.. ..|+
T Consensus 706 ~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 706 PSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 3 56677999999999999999998775 3344
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=9.1e-21 Score=212.93 Aligned_cols=514 Identities=12% Similarity=0.007 Sum_probs=349.3
Q ss_pred HHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCc---chHHHHHHHHH
Q 005454 25 AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDI---ISWNALLSAHA 101 (696)
Q Consensus 25 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~ 101 (696)
++..++.+......|+...|...+..+++..|....++..|...|.+.|+.++|+..+++..+.|+ ..+..| +
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L----a 119 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL----A 119 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH----H
Confidence 444555555544558888999999999988887778889999999999999999999998876433 333333 2
Q ss_pred ccCChhHHHHHHhcCCC--C-CcchHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HHHHHcc
Q 005454 102 RSGSVQDLRALFDKMPI--R-DSVSYNTAIAG--------FANKGFSREALQVFSRMQKDRFEPTDYTHVSA-LNACAQL 169 (696)
Q Consensus 102 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~ 169 (696)
..++.++|..+++++.. | +...+..+... |.+. ++|.+.++ .......|+..+.... ...+...
T Consensus 120 ~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 120 AIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred HhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 22888888899988863 3 33344444443 5555 44444444 3333334445545544 7888888
Q ss_pred CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc-CCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK-GGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
++++++..++..+.+.+.. +......|..+|.. .++ +.+..+++...+.|...+..++..|.+.|+.++|.++++++
T Consensus 196 ~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~ 273 (987)
T PRK09782 196 KQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN 273 (987)
T ss_pred hCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9999999999998888743 45556667777777 466 88888877655567788888888888999999888888887
Q ss_pred HHcCCC-CCcchHHHHHHH------------------------------HHh----------------------------
Q 005454 249 QLLGLN-PDEVTVSNILGA------------------------------CFQ---------------------------- 269 (696)
Q Consensus 249 ~~~g~~-p~~~t~~~ll~~------------------------------~~~---------------------------- 269 (696)
...-.. |+..++.-++.- +.+
T Consensus 274 ~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 353 (987)
T PRK09782 274 KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSV 353 (987)
T ss_pred cccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcc
Confidence 554222 444333332221 233
Q ss_pred -----------------------------------cCCHHHHHHHHHhccC-C-----ChhHHHHHHHHHHhcCC---hh
Q 005454 270 -----------------------------------TGRIDDAGRLFHVIKE-K-----DNVCWTTMIVGYTQNGK---EE 305 (696)
Q Consensus 270 -----------------------------------~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 305 (696)
.|+.++|.++|+..-+ + +...-+-++..|.+.+. ..
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 3444444444443332 1 11112233344433333 22
Q ss_pred HHHHH----------------------HHHhcc-CCCCC---CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 306 DALIL----------------------FNEMLS-EDVRP---DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 306 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
+++.+ +..... .+..| +...+..+..++.. ++.++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 22211 000000 01111 22233333333333 66677777777776654 3433
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~ 436 (696)
....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++.++.. |+. ..+..+......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~ 588 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYI 588 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHh
Confidence 333445555789999999999987653 455567777888899999999999999998853 443 333344445566
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~ 514 (696)
.|++++|...+++..+ ..|+...|..+..++.+.|++++|...+++.. ..|+ ...+..+..++...|+.++|...
T Consensus 589 ~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 589 PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7999999999999875 45778899999999999999999999998753 3554 55788888899999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++++++|+++..+..++.+|...|++++|...+++..+..
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999887643
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=6.4e-19 Score=198.17 Aligned_cols=528 Identities=11% Similarity=0.006 Sum_probs=375.5
Q ss_pred HHHHHHHHHHc-CCCCC-hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc
Q 005454 7 LRQAIDTLYSR-GQAAT-EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK 84 (696)
Q Consensus 7 ~~~~~~~m~~~-g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (696)
..++++.+++. .+.|+ ..++..+.+.+. ..++..+|+......++..|.....+..| ..+ ++.++|..++++
T Consensus 60 ~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye~ 133 (987)
T PRK09782 60 EATAIREFEYIHQQVPDNIPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVEE 133 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHHH
Confidence 33445544332 23443 556777778888 88899999999999999887433555544 222 889999999999
Q ss_pred CCCC---CcchHHHHHHH--------HHccCChhHHHHHHhcCCCCC--cch-HHHHHHHHHhCCChhHHHHHHHHhHHC
Q 005454 85 MPLR---DIISWNALLSA--------HARSGSVQDLRALFDKMPIRD--SVS-YNTAIAGFANKGFSREALQVFSRMQKD 150 (696)
Q Consensus 85 ~~~~---~~~~~~~li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~ 150 (696)
+... +..++..+... |.+.+...+|++ .+...++ ... .-.+...|.+.|++++|++++.++.+.
T Consensus 134 l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 134 LLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 8753 45566666665 888777777776 3333333 333 444488999999999999999999987
Q ss_pred CCCCCcchHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CC---
Q 005454 151 RFEPTDYTHVSALNACAQ-LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-----RN--- 221 (696)
Q Consensus 151 g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--- 221 (696)
+.. +..-...+-.++.. .++ +.+..++.. .++.++.++..+++.|.+.|+.++|.++++++.. |+
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 532 23334455556666 355 666666442 3446888899999999999999999999988861 00
Q ss_pred --------------------------------------------------------------------------------
Q 005454 222 -------------------------------------------------------------------------------- 221 (696)
Q Consensus 222 -------------------------------------------------------------------------------- 221 (696)
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence
Q ss_pred ----------hhHHHHHHHHHHhCCCchHHHHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCC---HHHHHHH-------
Q 005454 222 ----------LVSWNLMISGYLKNGQPKKCIDLFQEMQLL-G-LNPDEVTVSNILGACFQTGR---IDDAGRL------- 279 (696)
Q Consensus 222 ----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~---~~~A~~~------- 279 (696)
....-.+.-...+.|+.++|..+|+..... + -.++.....-++..|.+.+. ...+..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 000001111223445555666666555441 1 11222233366667776665 2222222
Q ss_pred ------------------HHhcc---CC--ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhh
Q 005454 280 ------------------FHVIK---EK--DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKL 336 (696)
Q Consensus 280 ------------------~~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 336 (696)
+.... .+ +...|..+..++.. +++++|+..+.+.... .|+......+..++...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC
Confidence 11111 12 55677888887776 8999999988887754 46655444445555689
Q ss_pred cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHH---HHHHHHHcCChHHHHHHHH
Q 005454 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS---MINGYAQNGQDLEALALYD 413 (696)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~ 413 (696)
|+++.|...+..+... .|+...+..+...+.+.|+.++|...|+.....++..++. +.......|++++|+..|+
T Consensus 523 Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999987654 3344456677888999999999999998877544333333 3333445599999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-C
Q 005454 414 KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-N 491 (696)
Q Consensus 414 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~ 491 (696)
+.++ +.|+...+..+..++.+.|++++|+..+++.... -+.+...+..+...+...|++++|++.+++.. ..| +
T Consensus 601 ~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 601 RSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9998 5688888999999999999999999999999862 23346788889999999999999999998753 345 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
...+..+..++...|++++|+..++++++++|++..+....+++..+..+++.|.+-+++--.-.+
T Consensus 677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 668999999999999999999999999999999999999999999999999999998877655444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-20 Score=185.56 Aligned_cols=445 Identities=16% Similarity=0.153 Sum_probs=277.1
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCC---cchHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCC
Q 005454 62 HNRLLHFYAKSGKLFYARDLFDKMPLRD---IISWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKG 135 (696)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g 135 (696)
...|..-..+.|++.+|++--..+-..| ....-.+-..|.+..+++....--....+. -..+|..+...+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 3445555556666666666554443322 122222334445555544433222222211 2345666666666666
Q ss_pred ChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh-HHHHHHHHHHcCCCHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF-VRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~ 213 (696)
+.++|+.+++.|.+. +|+ ...|..+..++...|+.+.|.+.+...++.. |+.+ ..+-+-......|++++|...
T Consensus 131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHH
Confidence 666666666666653 333 2345555555555666666666555555432 2222 122233333344555555555
Q ss_pred HHhcCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhH
Q 005454 214 FDRMNN--RN-LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290 (696)
Q Consensus 214 ~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 290 (696)
+.+... |. .+.|+.|...+-.+|+...|+.-|++.... .|+- ...
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f------------------------------~dA 254 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNF------------------------------LDA 254 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcc------------------------------hHH
Confidence 544333 21 234555555555555555555555554432 2221 223
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
|-.|...|...+.+++|+..|.+... ..|+ ...+..+...|...|.++.|+..+++.++..+. -...|+.|.+++-
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALk 331 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALK 331 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHH
Confidence 44455555555556666655555543 2333 334444445555666666666666666654432 3556777777777
Q ss_pred hcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 445 (696)
..|++.+|...|..... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|+.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~ 409 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIM 409 (966)
T ss_pred hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHH
Confidence 77777777777776552 2345677788888888888888888888877 66764 578888888889999999999
Q ss_pred HHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 446 HFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 446 ~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+++.. .+.|+ ...|+.|...|...|+.+.|.+.+.+ +...|.- ...+.|...+...|++.+|...++.+++++
T Consensus 410 ~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 410 CYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 888876 56787 47889999999999999999988876 4556754 488999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
|+.+.+|-.++.++.-..+|.+=.+.++
T Consensus 487 PDfpdA~cNllh~lq~vcdw~D~d~~~~ 514 (966)
T KOG4626|consen 487 PDFPDAYCNLLHCLQIVCDWTDYDKRMK 514 (966)
T ss_pred CCCchhhhHHHHHHHHHhcccchHHHHH
Confidence 9999999999999888888877443333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=5.2e-20 Score=183.34 Aligned_cols=421 Identities=14% Similarity=0.155 Sum_probs=338.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK 203 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 203 (696)
-..|..-..+.|++++|++.-...-+.+ +.+..+...+-..+.+..+++...+.-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3445556677888888887655443331 1222222223333445555555444444444433 2245678889999999
Q ss_pred CCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhcCCHHHHHHH
Q 005454 204 GGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA-CFQTGRIDDAGRL 279 (696)
Q Consensus 204 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~A~~~ 279 (696)
.|++++|+..++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+. .|+.....+-+.. +...|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999876 35678999999999999999999999998874 5766655444444 4457999999998
Q ss_pred HHhccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC
Q 005454 280 FHVIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355 (696)
Q Consensus 280 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (696)
+.+..+. -.+.|+.|...+-.+|+...|+.-|++... +.|+ ...|..+...+...+.++.|...+..+....+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp- 283 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP- 283 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-
Confidence 8876643 356899999999999999999999999886 5565 34677888888888999999999888877654
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVL 431 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 431 (696)
....++..+...|..+|.+|.|+..|++... |+ ...|+.|..++-..|+..+|...|.+.+. +.|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 3567778888999999999999999998874 43 45899999999999999999999999988 56774 6889999
Q ss_pred HHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCCh
Q 005454 432 SACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSL-IWSTLLSVCAMKGDI 508 (696)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~ 508 (696)
..+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+.-+++ +.++|+.. .++.+...|...|+.
T Consensus 362 ni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 362 NIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999886 45566 46789999999999999999999987 56688765 899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-++...+-.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998886643
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=4e-18 Score=188.69 Aligned_cols=418 Identities=12% Similarity=0.039 Sum_probs=289.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
.+......+.+.|++++|+..|++..+. .|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456667788889999999999888754 6777778888888888889999988888888765 235667778888899
Q ss_pred cCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 203 KGGEIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
..|++++|...|...... +......++..+.. ..+........+.. +++...+..+ ..|......+.+..-
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 279 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAG 279 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhh
Confidence 999999988877654321 11111111211111 12222222222221 2222222222 222222111111111
Q ss_pred HHhccCCCh---hHHHHHHHH---HHhcCChhHHHHHHHHhccCC-CCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHH
Q 005454 280 FHVIKEKDN---VCWTTMIVG---YTQNGKEEDALILFNEMLSED-VRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 280 ~~~~~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (696)
++...+.+. ..+..+... ....+++++|++.|++....+ ..|+ ...+..+...+...|+++.|...+..+++
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 280 LEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred hhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111111111 111111111 123478899999999988754 2343 34566666677788999999999999988
Q ss_pred hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 005454 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTF 427 (696)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 427 (696)
..+. +...+..+...+...|++++|...|+... ..+...|..+...+...|++++|+..|++.++. .|+ ...+
T Consensus 360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 6542 46677888889999999999999998765 345778999999999999999999999999984 454 5667
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-------H-HHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNS-------L-IWSTL 498 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------~-~~~~l 498 (696)
..+..++.+.|++++|+..|+...+. .+.+...+..+..++...|++++|.+.|++. ...|+. . .++..
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a 514 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA 514 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence 77788889999999999999998863 3445788899999999999999999999873 333321 1 12222
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+..+...|++++|...++++++++|++..++..++.+|...|++++|.+.+++..+
T Consensus 515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22334469999999999999999999999999999999999999999999998865
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.6e-19 Score=185.05 Aligned_cols=292 Identities=16% Similarity=0.136 Sum_probs=172.6
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcC
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKG 204 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 204 (696)
..+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3455667777777777777765 343 33566666677777777777777777766532221 24567788888888
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhcCCHHHHH
Q 005454 205 GEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAG 277 (696)
Q Consensus 205 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~ 277 (696)
|+++.|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+...+..++. ..+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999998888865 45667888888888999999999999888876533221 12334455566667777776
Q ss_pred HHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC
Q 005454 278 RLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV 354 (696)
Q Consensus 278 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 354 (696)
..|+++.+ .+...+..+...|.+.|++++|++.|+++...+......++..+..++...|+.+.|...+..+.+..
T Consensus 201 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 201 ALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 66666542 23445555666666667777777766666643221112334444455555555555555555554443
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
|+...+..++..|.+.|++++|..+|+.+. .|+..+++.++..+.. .|+..+++.++++|.+.+++|++
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 222333444445555555555555554333 2444444444444332 23444555555555444444433
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=8.8e-18 Score=176.49 Aligned_cols=166 Identities=11% Similarity=0.093 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 471 (696)
..+...+...|++++|...|+++.+. .|+ ..++..+...+.+.|++++|.++|+++... +.......+..++.+|.
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHH
Confidence 34455555666666666666666553 233 345555556666666666666666666542 11111345566667777
Q ss_pred ccCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---cCChhHHHH
Q 005454 472 RSSDVDKAVDLIKSLP-HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA---CGRWEDVAS 547 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~ 547 (696)
+.|++++|.+.++++. ..|+...+..+...+...|++++|...++++++..|++. .+..+...+.. .|+.+++..
T Consensus 261 ~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~ 339 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLL 339 (389)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHH
Confidence 7777777777776643 246666667778888888888888888888888888765 34444444442 568889999
Q ss_pred HHHHhhhCCCcCCCc
Q 005454 548 IRSSMKSKNVKKFAA 562 (696)
Q Consensus 548 ~~~~m~~~~~~~~~~ 562 (696)
++++|.++++++.|.
T Consensus 340 ~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 340 LLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHhCCCC
Confidence 999998888888876
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2e-16 Score=166.49 Aligned_cols=525 Identities=11% Similarity=0.041 Sum_probs=381.6
Q ss_pred HHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHHH---
Q 005454 26 YTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHA--- 101 (696)
Q Consensus 26 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~--- 101 (696)
..-+-++|.....+++..++.++..++...|... .+.-.+-.++.+.|+.+.|+..|.+..+-|+...++++....
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDL 244 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHH
Confidence 3446788877788999999999999887777655 565566688899999999999999999877766666554332
Q ss_pred cc---CChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCChH
Q 005454 102 RS---GSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFE--PTDYTHVSALNACAQLLDLR 173 (696)
Q Consensus 102 ~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~ 173 (696)
.. ..+..+..++...- ..|++..+.|..-|.-.|+++.++.+...+...... .-...|--+.+++-..|+++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHH
Confidence 22 23444555554432 357888999999999999999999999888764311 11234777888899999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCC----CchHHHHHHH
Q 005454 174 RGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNG----QPKKCIDLFQ 246 (696)
Q Consensus 174 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~l~~ 246 (696)
.|..+|.+..+....-.+..+-.|..+|.+.|+++.|...|+++.. | +..+...+...|+..+ ..++|..++.
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 9999999988875443355566789999999999999999999865 3 4557777777777775 4466666666
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccC-
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK--------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE- 317 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 317 (696)
+..+.- +.|...|..+...|-...- ..++.+|.... ...+...|.+...+...|++++|...|.+....
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 665543 4456667666666554433 22244443322 346678899999999999999999999988754
Q ss_pred --CCCCCcc-----c-hHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---C
Q 005454 318 --DVRPDKF-----S-ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---T 386 (696)
Q Consensus 318 --g~~p~~~-----t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 386 (696)
-..+|.. | --.+....-..++.+.|.+.+..+++..+. -+..|--|+.+.-..+...+|...++... +
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~ 561 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS 561 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc
Confidence 2233331 2 222334445667899999999999886542 23333333333334467788888888765 4
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc------------CCcHHHHHHHHHHhHHh
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLH------------ADLFERGQNHFDSISAV 453 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~ 453 (696)
.|+..|+-+...+.....+..|.+-|....+.- ..+|..+..+|.+.|.. .+..+.|+++|..+.+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~- 640 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR- 640 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh-
Confidence 677788888888999888988988777766532 34677777777776643 2346778888887775
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCchH
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPY 529 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~ 529 (696)
.-+.|...-+.+.-.++..|++.+|.++|.+.... .+..+|-.+..+|...|++..|.++|+..++.. .+++...
T Consensus 641 -~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl 719 (1018)
T KOG2002|consen 641 -NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVL 719 (1018)
T ss_pred -cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 33455667777888899999999999999876432 345688999999999999999999999987754 4566778
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
..|+.++.+.|+|.+|.+........
T Consensus 720 ~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 720 HYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 89999999999999999988766553
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=3.8e-16 Score=176.03 Aligned_cols=392 Identities=11% Similarity=0.037 Sum_probs=230.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 005454 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205 (696)
Q Consensus 126 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 205 (696)
-.+......|+.++|++++.+..... +.+...+..+..++...|++++|..+++..++.. +.+...+..+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 33445556677777777776665421 2233345566666666666666666666666553 223444556666666666
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 005454 206 EIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 206 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
++++|...+++... | +.. |..+...+...|++++|+..++++.+. .|+ ...+..+..++...|..+.|...++
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 66666666666543 2 333 555666666666666666666666654 232 2233334444555555555555555
Q ss_pred hccCCChh--------HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc---hhHHHHHHHHH
Q 005454 282 VIKEKDNV--------CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL---YHGQVVHGKAV 350 (696)
Q Consensus 282 ~~~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~ 350 (696)
.... ++. ....++......+ ....+.+ +.|...++.+.
T Consensus 175 ~~~~-~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 175 DANL-TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADRALAQYDALE 223 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHHHHHHHHHHH
Confidence 5443 111 0000111110000 0011111 34444555554
Q ss_pred Hh-CCCCchH--HHHH---HHhhHHhcCChHHHHHHHhcCCCCC---ch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005454 351 VL-GVDDDLL--VSSA---LIDMYCKCGVTDDAWTVFNMMPTRN---VV-SWNSMINGYAQNGQDLEALALYDKLLQENL 420 (696)
Q Consensus 351 ~~-~~~~~~~--~~~~---li~~y~~~g~~~~A~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (696)
+. ...|+.. ...+ .+..+...|+.++|+..|+.+...+ +. .-..+...|...|++++|+..|+++.+..
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~- 302 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHP- 302 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcC-
Confidence 33 1111111 1111 1223345577777777777776421 11 11224567777888888888888776532
Q ss_pred CCC-----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----------CCCC---hHHHHHHHHHHhccCCHHHHHHH
Q 005454 421 KPD-----SFTFVSVLSACLHADLFERGQNHFDSISAVHG----------ITPS---LDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 421 ~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
|. ......+..++...|++++|.++++.+..... -.|+ ...+..+..++...|++++|++.
T Consensus 303 -p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 303 -ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred -CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 23455556667778888888888887765310 1122 23455677788888999999988
Q ss_pred HHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 483 IKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 483 ~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++++.. .| +...+..+...+...|+.++|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 887533 34 45688888888889999999999999999999999999889999999999999999999888764
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=170.83 Aligned_cols=407 Identities=10% Similarity=0.062 Sum_probs=280.9
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 168 (696)
..=.+......|+.++|++++.+... .+...+..+...+...|++++|.++|++..+. .|+ ...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34456677889999999999998764 24445899999999999999999999998875 454 4456677778889
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLF 245 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~ 245 (696)
.|++++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...|..++|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999874 33555 88899999999999999999999876 3 4556677888888999999999988
Q ss_pred HHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh---hHHHHHHHHhccC-CCCC
Q 005454 246 QEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE---EDALILFNEMLSE-DVRP 321 (696)
Q Consensus 246 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~p 321 (696)
+.... .|+... -+ ....+....+.. +.......+++ ++|++.++.+.+. ...|
T Consensus 174 ~~~~~---~p~~~~---~l-------~~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 174 DDANL---TPAEKR---DL-------EADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HhCCC---CHHHHH---HH-------HHHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 76553 333100 00 000111111100 11111122222 5566666665542 1222
Q ss_pred Ccc-chHH----HHHHHHhhcCchhHHHHHHHHHHhCCC-CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC-------
Q 005454 322 DKF-SISS----VVSSCAKLASLYHGQVVHGKAVVLGVD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN------- 388 (696)
Q Consensus 322 ~~~-t~~~----ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------- 388 (696)
+.. .+.. .+.++...++.++|+..++.+.+.+.+ |+ .....+...|...|++++|...|+.+...+
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 1110 123344556677777777776665432 22 122224667777788888877777654321
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhh
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQEN-----------LKPDS---FTFVSVLSACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
...+..+..++...|++++|.++++++.... -.|+. ..+..+...+...|+.++|++.++.+..
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~-- 387 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY-- 387 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 1235556667788888888888888887642 12332 2345566778889999999999999976
Q ss_pred CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
..+.+...+..+..++...|++++|++.+++.. ..|+ ...+..+...+...|++++|+.+++++++..|+++.+.
T Consensus 388 ~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 388 NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 345557888899999999999999999998754 3565 45677777788899999999999999999999988653
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.79 E-value=2.2e-15 Score=166.91 Aligned_cols=440 Identities=13% Similarity=0.062 Sum_probs=304.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHc
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQ 168 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~ 168 (696)
.+..+...|.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+.+..+. .|+ ...+..+..++..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 34567788899999999999998875 467778888999999999999999999998875 454 4477788888999
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
.|++++|..-+..+...+...+.... .++..+........+...++.-+ .+..++..+.. |........+..-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSA-QAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHH-HHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcc
Confidence 99999999888766554322222222 22222212112234444443322 23333333322 32222222222222211
Q ss_pred HHcCCCCCc-chHHHHHHH---HHhcCCHHHHHHHHHhccCC------ChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 249 QLLGLNPDE-VTVSNILGA---CFQTGRIDDAGRLFHVIKEK------DNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 249 ~~~g~~p~~-~t~~~ll~~---~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
.+ ..|+. ..+..+... ....+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.++.
T Consensus 284 ~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l- 360 (615)
T TIGR00990 284 NE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL- 360 (615)
T ss_pred cc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 11 11111 111111111 12346888999999877632 3456888888889999999999999998864
Q ss_pred CCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHH
Q 005454 319 VRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNS 394 (696)
Q Consensus 319 ~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~ 394 (696)
.|+ ...|..+...+...|++++|...+..+++... .+..++..+...|...|++++|...|+.... .+...|..
T Consensus 361 -~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 361 -DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHH
Confidence 454 44677777788889999999999999988754 3678888999999999999999999997763 35667888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--------HHHHH
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--------DHYAC 465 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--------~~~~~ 465 (696)
+...+.+.|++++|+..|++.++. .|+ ...+..+...+...|++++|+..|+..... .|+. ..++.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHH
Confidence 889999999999999999999874 454 678888888999999999999999998752 3321 11222
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
....+...|++++|.+++++. ...|+ ...+..+...+...|++++|...+++++++.+.....+ ....|.
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~ 585 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYA 585 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHH
Confidence 233344579999999999873 44554 44788999999999999999999999999887543322 233455
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|.++..+.++
T Consensus 586 ~a~~~~~~~~~ 596 (615)
T TIGR00990 586 EATRTQIQVQE 596 (615)
T ss_pred HHHHHHHHHHH
Confidence 66666554444
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.3e-16 Score=172.75 Aligned_cols=326 Identities=14% Similarity=0.044 Sum_probs=188.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHh
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLK 234 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 234 (696)
....++..+.+.|+++.|..++...+...... ...+..++......|++++|...|+++.. .+...|..+...+.+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLK 122 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34556666777777777777777777765443 33333344455567777777777777654 234456666677777
Q ss_pred CCCchHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHhcCChhHHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPD-EVTVSNILGACFQTGRIDDAGRLFHVIKE--K-DNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
.|++++|++.++++... .|+ ...+..+...+...|+.++|...++.+.. | +...+..+ ..+...|++++|+..
T Consensus 123 ~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 123 SKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred cCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 77777777777777654 233 34455555556666666666666654431 1 22222222 235555666666666
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CC
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TR 387 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 387 (696)
++.+......++.. ....+...+.+.|+.++|...|+... ..
T Consensus 200 ~~~~l~~~~~~~~~-----------------------------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~ 244 (656)
T PRK15174 200 ARALLPFFALERQE-----------------------------------SAGLAVDTLCAVGKYQEAIQTGESALARGLD 244 (656)
T ss_pred HHHHHhcCCCcchh-----------------------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66554432222222 22233344444555555555554433 12
Q ss_pred CchHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHH
Q 005454 388 NVVSWNSMINGYAQNGQDLE----ALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
+...+..+...|...|++++ |+..|++..+. .|+ ...+..+...+...|++++|...+++..+. -+.+...
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a 320 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV 320 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 33455555566666666654 66777776663 344 345666666677777777777777776642 1222445
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP-HKPNSLIW-STLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+..+..+|.+.|++++|.+.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 5566677777777777777776643 34554333 3345566777888888888888887777653
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=6e-16 Score=170.69 Aligned_cols=346 Identities=8% Similarity=0.001 Sum_probs=265.7
Q ss_pred cCCCHHHHHHHHHhcCC------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 203 KGGEIDKARWLFDRMNN------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+..+++.---.|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..++.+....|+.++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44455444444444433 122234456777888899999999988888764332 33444555666778999999
Q ss_pred HHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHh
Q 005454 277 GRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVL 352 (696)
Q Consensus 277 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (696)
...|+.+.. .+...|..+...+.+.|++++|++.|+++... .|+ ...+..+...+...|+.+.|...+..+...
T Consensus 96 ~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 96 LQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999988763 35667888888899999999999999998864 444 456677788888999999999999888776
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCC----CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTR----NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
...+.. .+..+. .+...|++++|...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+.
T Consensus 174 ~P~~~~-a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPPRGD-MIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCCCHH-HHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 654333 333333 478899999999999986542 23344556778899999999999999999853 33456777
Q ss_pred HHHHHHhcCCcHHH----HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHH
Q 005454 429 SVLSACLHADLFER----GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVC 502 (696)
Q Consensus 429 ~ll~a~~~~g~~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~ 502 (696)
.+...+...|++++ |...|+++.+. -+.+...+..+..++.+.|++++|...+++.. ..|+ ..++..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888999999986 89999988762 23346788999999999999999999998753 3454 55788889999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...|++++|...++++++.+|.++..+..++.++...|++++|...+++..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999988777778999999999999999999887654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=8.5e-15 Score=161.80 Aligned_cols=430 Identities=12% Similarity=0.070 Sum_probs=267.6
Q ss_pred HHHHHccCChhHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH-HH--HHHHHccC
Q 005454 97 LSAHARSGSVQDLRALFDKMPIRDSV---SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHV-SA--LNACAQLL 170 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~l--l~~~~~~~ 170 (696)
+-...+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+. .+ ...+...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence 34557889999999999988743222 23388888888899999999999887 34333332 23 44677789
Q ss_pred ChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 171 DLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNL--VSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 171 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
+++.|.++++.+++.... ++.++..++..|...++.++|++.++++...+. ..+-.++..+...++..+|++.++++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 999999999999888644 467777888889999999999999999887433 33433333333355665699999999
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchH
Q 005454 249 QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS 327 (696)
Q Consensus 249 ~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 327 (696)
.+.. +-+...+..+..++.+.|-...|.++..+-+.- +...+.-+ +.+.|.+..+.. ..|+..
T Consensus 196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a----~~~~~~--- 259 (822)
T PRK14574 196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMA----VLPTRS--- 259 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhc----cccccc---
Confidence 8864 334566677788888888888888877765521 11111111 011111111111 111000
Q ss_pred HHHHHHHhhcC---chhHHHHHHHHHHh-CCCCc--hHHHHHH---HhhHHhcCChHHHHHHHhcCCCCC----chHHHH
Q 005454 328 SVVSSCAKLAS---LYHGQVVHGKAVVL-GVDDD--LLVSSAL---IDMYCKCGVTDDAWTVFNMMPTRN----VVSWNS 394 (696)
Q Consensus 328 ~ll~~~~~~~~---~~~a~~~~~~~~~~-~~~~~--~~~~~~l---i~~y~~~g~~~~A~~~~~~~~~~~----~~~~~~ 394 (696)
...+ .+.|..-++.+... +..|. .....+. +-++.+.|++.++++.|+.+.... ..+-..
T Consensus 260 -------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 -------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred -------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 0001 12222222332221 11111 1112222 234556677777777777776322 224455
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----------CCCC
Q 005454 395 MINGYAQNGQDLEALALYDKLLQEN-----LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG----------ITPS 459 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~ 459 (696)
+..+|...+++++|+.+|+++.... ..++......|..++..++++++|..+++.+.+... -.|+
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 6677777777777777777775532 122233345677777777777777777777765211 0122
Q ss_pred ---hHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 ---LDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...+..++..+...|++.+|++.++++.. +-|...+..+...+...|...+|+..++.+..++|++..+...++.
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 13344456667777888888877776532 2356677777777777888888888887777777877777777788
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+...|+|++|.++.+.+.+
T Consensus 493 ~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHh
Confidence 88888888888777766654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=7.1e-15 Score=155.03 Aligned_cols=512 Identities=14% Similarity=0.126 Sum_probs=376.7
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccC---ChHHHHHHHccCC---CCCcchHHHHHHHHHccCChhHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSG---KLFYARDLFDKMP---LRDIISWNALLSAHARSGSVQDLR 110 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 110 (696)
..+....|+..+.++++.+|....++-.|.-.-.... .+..+..++.+.- ..|+++.+.|.+.|.--|++..+.
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHH
Confidence 5677888999999999888743244333333333333 3445555555543 248999999999999999999999
Q ss_pred HHHhcCCCCC------cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH--HHHHHHHHccCChHHHHHHHHHH
Q 005454 111 ALFDKMPIRD------SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH--VSALNACAQLLDLRRGKQIHGKI 182 (696)
Q Consensus 111 ~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~ 182 (696)
.+...+...+ ..+|-.+.++|-..|++++|...|.+..+. .||.+++ .-+...+...|+++.+...|+.+
T Consensus 291 ~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 291 HLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 9988776432 346888999999999999999999888754 5666544 45677889999999999999999
Q ss_pred HHcCCCCchhHHHHHHHHHHcCC----CHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHHHHHHHHH----HHc
Q 005454 183 VVGNLGGNVFVRNALTDMYAKGG----EIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEM----QLL 251 (696)
Q Consensus 183 ~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~ 251 (696)
.+.. +.+..+...|...|...+ ..+.|..++.+...+ |...|-.+...|.+. ++..++..|... ...
T Consensus 369 ~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 369 LKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESK 446 (1018)
T ss_pred HHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc
Confidence 9875 446667777777777765 567788888777663 455676666666554 444447766654 455
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-------Ch------hHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-------DN------VCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
+-++.....|.+...+...|.++.|...|.+.... |. .+--.+...+-..++++.|.+.|..+...
T Consensus 447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke- 525 (1018)
T KOG2002|consen 447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE- 525 (1018)
T ss_pred CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 66677888999999999999999999999876522 22 12334566677788999999999999874
Q ss_pred CCCCccc-hHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHH
Q 005454 319 VRPDKFS-ISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSW 392 (696)
Q Consensus 319 ~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~ 392 (696)
.|.-+. |.-++......+...+|...+..+....- .++.+++.+.+.|.+...+.-|.+-|..+. .+|..+.
T Consensus 526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl 603 (1018)
T KOG2002|consen 526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL 603 (1018)
T ss_pred -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence 344332 22232222334678888888888887543 467777778889999988888888665543 2466666
Q ss_pred HHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 005454 393 NSMINGYAQ------------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460 (696)
Q Consensus 393 ~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 460 (696)
-+|.+.|.+ .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|.+..+. .....
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~ 680 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFE 680 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCC
Confidence 566665542 345678999999988853 445677777878889999999999999999874 33456
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP----HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
.+|-.+...|..+|++-.|+++|+... .+.+..+...|..++...|.+.+|.+.+..+..+.|.++..-..++-+.
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 778889999999999999999997632 2457778899999999999999999999999999999988766665554
Q ss_pred hh-------------------cCChhHHHHHHHHhhhCCCc
Q 005454 537 AA-------------------CGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 537 ~~-------------------~g~~~~A~~~~~~m~~~~~~ 558 (696)
.+ .+..++|.++|..|...+-+
T Consensus 761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 34567888888888765543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.77 E-value=2.1e-14 Score=158.70 Aligned_cols=445 Identities=10% Similarity=0.046 Sum_probs=308.9
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcch---HHHHHHHHHccCChhHHHHHHhcCCCCCcchH-HHH--HHHHHh
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS---WNALLSAHARSGSVQDLRALFDKMPIRDSVSY-NTA--IAGFAN 133 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~l--i~~~~~ 133 (696)
..|...| ...+.|+++.|...|++..+.++.. ...++..+...|+.++|+..+++...|+...+ ..+ ...|..
T Consensus 36 ~~y~~ai-i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLI-IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHH-HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 4444444 4458999999999999998754442 34888999999999999999999987744443 333 447788
Q ss_pred CCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW 212 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 212 (696)
.|++++|+++|+++.+. .|+ ...+..++..+...++.++|.+.+..+.+.. |+...+..++..+...++..+|++
T Consensus 115 ~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 115 EKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred cCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 89999999999999976 344 4556677788889999999999999998764 445555556666666777767999
Q ss_pred HHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 005454 213 LFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289 (696)
Q Consensus 213 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (696)
.++++.+ | +...+..+..++.+.|-...|+++..+ .|+.++-...... ..+.|.+..+....++..
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc
Confidence 9999976 4 456778888999999999999988765 3443332222110 111222222111101000
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccC-CCCCCccc-h----HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFS-I----SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSA 363 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t-~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 363 (696)
.-. +---.+.|+.-++.+... +..|.... | .--+-++...++..+++..++.+...+.+....+-.+
T Consensus 260 ----~~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a 332 (822)
T PRK14574 260 ----ETE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRW 332 (822)
T ss_pred ----chh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHH
Confidence 000 000124455555554431 11122111 1 1234456667777777777777777776655667777
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCC---------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTR---------NVVSWNSMINGYAQNGQDLEALALYDKLLQENL-----------KPD 423 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~ 423 (696)
+.++|...++.++|..+|+.+... +......|.-+|...+++++|..+++++.+... .||
T Consensus 333 ~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn 412 (822)
T PRK14574 333 AASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPN 412 (822)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCC
Confidence 888888888888888888776421 222346677888888888888888888877311 122
Q ss_pred --HH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC-HHHHHHH
Q 005454 424 --SF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN-SLIWSTL 498 (696)
Q Consensus 424 --~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~l 498 (696)
-. .+..++..+...|++.+|++.++.+.. .-+-|......+.+++...|.+.+|++.++.... .|+ ..+....
T Consensus 413 ~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~ 490 (822)
T PRK14574 413 DDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQ 490 (822)
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHH
Confidence 22 344456678889999999999999975 4556788899999999999999999999987543 454 4577778
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
+.+....+++++|+.+.+.+++..|+++.+-
T Consensus 491 ~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 491 AETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8888899999999999999999999988553
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=6.2e-12 Score=127.26 Aligned_cols=465 Identities=14% Similarity=0.077 Sum_probs=384.1
Q ss_pred HHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHH----hHHCCCCCCcchHHHHHHHHHc
Q 005454 96 LLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSR----MQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 96 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.-+|++..-++.|.+++++..+ .+...|-+-...--.+|+.+....+..+ +...|+..|...|..=..+|-.
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34466777778888888877653 4777888888877889998888887655 4567889999999988899999
Q ss_pred cCChHHHHHHHHHHHHcCCCC--chhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGG--NVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCID 243 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 243 (696)
.|..-.+..|....+..|++. -..+|+.-.+.|.+.+.++-|+.+|....+ .+...|...+..--..|..++-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999888888753 346788888899999999999999988876 456678887777777899999999
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 005454 244 LFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320 (696)
Q Consensus 244 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 320 (696)
+|++.... ++-....|......+-..|++..|+.++.+.-+ .+...|-+-+.....+.++++|..+|.+... ..
T Consensus 572 llqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 572 LLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 99999876 344555666666678888999999999988764 3566798999999999999999999999885 56
Q ss_pred CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-CchHHHHHHH
Q 005454 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVVSWNSMIN 397 (696)
Q Consensus 321 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~ 397 (696)
|+...|..-+..--.++..++|.++++..++.-. .-...|-.+...+-+.++++.|...|..-.+ | .+..|-.+..
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 7777777777777778999999999999988643 3466788889999999999999999986653 3 4557888888
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (696)
.--+.|+.-.|..++++..-.+ +-|...|...++.-.+.|+.++|..+..++.+ ..+.+...|..-|.+..+.++-.
T Consensus 728 leEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkT 804 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKT 804 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccch
Confidence 8888999999999999998865 55678899999999999999999999999987 56677788999999999999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
.+.+.+++....| .+..++...+.....++.|..-|+++++.+|++..+|..+...+...|.-++-.+++++....
T Consensus 805 ks~DALkkce~dp--hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~-- 880 (913)
T KOG0495|consen 805 KSIDALKKCEHDP--HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA-- 880 (913)
T ss_pred HHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--
Confidence 8888888876554 455567777888899999999999999999999999999999999999999999999877653
Q ss_pred cCCCceeEEEECCE
Q 005454 558 KKFAAYSWIEIDNK 571 (696)
Q Consensus 558 ~~~~~~s~i~~~~~ 571 (696)
.|..|..|..+...
T Consensus 881 EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 881 EPTHGELWQAVSKD 894 (913)
T ss_pred CCCCCcHHHHHhhh
Confidence 35567788765443
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=2.6e-11 Score=127.82 Aligned_cols=479 Identities=13% Similarity=0.092 Sum_probs=315.1
Q ss_pred HccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcC---CCCCcchHHHHHHHHHhCCChhHHHHH
Q 005454 70 AKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKM---PIRDSVSYNTAIAGFANKGFSREALQV 143 (696)
Q Consensus 70 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l 143 (696)
...|++++|.+++.++++. +...|-.|...|-..|+.+++...+-.. ...|...|-.+.....+.|++.+|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3448888888888887753 5677888888888888888887765433 344667788888888888888888888
Q ss_pred HHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH----HHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 144 FSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN----ALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 144 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.. ..+..|...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 88888752 3333333444556677888888888888887765433333222 234556667777888888877654
Q ss_pred -----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC---------------------------CCCCcchHHHHHHHH
Q 005454 220 -----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG---------------------------LNPDEVTVSNILGAC 267 (696)
Q Consensus 220 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------~~p~~~t~~~ll~~~ 267 (696)
-+...+|.++..|.+...++.|......+.... +.++...+ -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhh
Confidence 234568888888888888888888888776611 22222221 111223
Q ss_pred H--hcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchh
Q 005454 268 F--QTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 268 ~--~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 341 (696)
. +.+...+++.-|.... ..++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..++...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 3 3344444443332222 224557888999999999999999999999876555567788889999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch------------HHHHHHHHHHHcCChHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV------------SWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~------------~~~~li~~~~~~g~~~~A~ 409 (696)
|.+.+..++...+. +..+-..|...|.+.|+.++|.+++..+..||.. .--.....|.+.|+.++=+
T Consensus 468 A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 468 AIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999987654 5666778889999999999999999998766522 1122345567788887766
Q ss_pred HHHHHHHHCC-----CCC-----------------CHHHHHHHHHHHhcCCcHHHHHHHH-----HHhHHhhCCCCC--h
Q 005454 410 ALYDKLLQEN-----LKP-----------------DSFTFVSVLSACLHADLFERGQNHF-----DSISAVHGITPS--L 460 (696)
Q Consensus 410 ~l~~~m~~~g-----~~p-----------------~~~t~~~ll~a~~~~g~~~~a~~~~-----~~m~~~~~~~p~--~ 460 (696)
.+-.+|+..+ +.| ...+...++.+-.+.++........ .......++.-+ -
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 6555554321 112 1122223333333333211111100 011111244433 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-----CCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-----KPNS---LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG 527 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~ 527 (696)
..+.-++..+.+.|++++|+.+...+.. .++. ..-...+.++...++...|...++.++.. +|--..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 5667788899999999999999876532 2222 12344566677889999999999999887 666566
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHH
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
.|+...+...+.|+----.+++..
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677666666666654433344333
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=2.9e-13 Score=130.83 Aligned_cols=473 Identities=12% Similarity=0.072 Sum_probs=300.1
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcch-----HHHHHHHHHccCChhHHHHHHhcCC----CCC----cchHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIIS-----WNALLSAHARSGSVQDLRALFDKMP----IRD----SVSYNT 126 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~f~~~~----~~~----~~~~~~ 126 (696)
.++..|.+-|.......+|...++-+.+...+. --.+.+.|.+...+.+|++.+.... .-+ +...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 455667788888888899999988877532221 1224567888889999999876543 222 223455
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH--------HHHHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV--------RNALT 198 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--------~~~li 198 (696)
+--.|.+.|.++.|+.-|+...+. .||..+-..|+-.+-..|+-+..++.|..++.....+|..- -..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555688999999999999998865 68877766666666677899999999999987643332221 11222
Q ss_pred HHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHh---CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH
Q 005454 199 DMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK---NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD 275 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 275 (696)
.--.+...+...++--..+.++-+.|-.-+|.-... .--.+-+++.++.-....+..+ .-..-...|.+.|+++.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d--lei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID--LEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh--hhhhHHHHHHhccCHHH
Confidence 222121111111000000000000000000000000 0001112222221111000000 00011123778888998
Q ss_pred HHHHHHhccCCChhHHHH----HHHH-HHh-cCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHH
Q 005454 276 AGRLFHVIKEKDNVCWTT----MIVG-YTQ-NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349 (696)
Q Consensus 276 A~~~~~~~~~~~~~~~~~----li~~-~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 349 (696)
|.+++.-+..+|..+-++ |-.. |.+ ..++..|...-+..+.. -+-+......-.......|+++.|...++++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 888888777665443222 2222 222 33556666655554432 1111111111122233468899999999988
Q ss_pred HHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
+...-......|| +.-.+.+.|++++|+..|-++. ..++.....+...|-...+...|++++-+.... ++.|+..
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 8754433333333 3335778999999999998765 456777778888999999999999999887763 4555678
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-Hh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVC-AM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~-~~ 504 (696)
+..|...|-+.|+-.+|.+++..--+ -++-+.++..-|...|....-+++|+.+|++. ..+|+..-|..++..| ++
T Consensus 595 lskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 88888999999999999987765443 45667888888888999999999999999885 4589999999998877 56
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
.|++++|..+++......|.+......|..+....|.
T Consensus 673 sgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 7999999999999999999999999999988888874
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=3.4e-12 Score=122.87 Aligned_cols=430 Identities=14% Similarity=0.173 Sum_probs=275.2
Q ss_pred HHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHH--HHccCCh-HHHHHHHccCCC---CCcchHHHHH
Q 005454 25 AYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHF--YAKSGKL-FYARDLFDKMPL---RDIISWNALL 97 (696)
Q Consensus 25 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~--~~~~g~~-~~a~~~~~~~~~---~~~~~~~~li 97 (696)
+=+.|++--. .+....+.-++..+...|.+.+ .+--.|+.. |....++ -.-++.|-.|.. ....+|
T Consensus 118 ~E~nL~kmIS---~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW---- 190 (625)
T KOG4422|consen 118 TENNLLKMIS---SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW---- 190 (625)
T ss_pred chhHHHHHHh---hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc----
Confidence 4455555443 4455556666666666666655 444444332 2223333 233445655554 244455
Q ss_pred HHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHH
Q 005454 98 SAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQ 177 (696)
Q Consensus 98 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 177 (696)
|.|.+.+ -+|+. ..++..+|..||.++++-...+.|.+++++......+.+..+|+.+|.+.+-. .++.
T Consensus 191 ----K~G~vAd--L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD--LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKK 259 (625)
T ss_pred ----ccccHHH--HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHH
Confidence 4455444 34444 44456788999999999988999999999988877888888999988876533 3378
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHH----HHHhcCC----CChhHHHHHHHHHHhCCCchH-HHHHHHHH
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARW----LFDRMNN----RNLVSWNLMISGYLKNGQPKK-CIDLFQEM 248 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 248 (696)
+..+|+...+.||..++|+++.+.++.|+++.|.+ ++.+|++ |...+|..+|..+.+.+++.+ |..++.+.
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 88888888889999999999999999998876654 4455543 788889999998888888754 33344443
Q ss_pred H----HcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhHHHHHHHHHHhcCChhHHHH
Q 005454 249 Q----LLGLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEK-----------DNVCWTTMIVGYTQNGKEEDALI 309 (696)
Q Consensus 249 ~----~~g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~ 309 (696)
. .+.++| |..-|...+..|.+..+.+-|.++..-+... ...-|..+....++....+.-+.
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~ 419 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK 419 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233443 3445667777788888888888887665532 12236667788899999999999
Q ss_pred HHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc
Q 005454 310 LFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV 389 (696)
Q Consensus 310 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 389 (696)
.|+.|.-.-.-|+..+...++++....+.++-..+++..++..|.........-+...+++.. ..|+.
T Consensus 420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~t 487 (625)
T KOG4422|consen 420 WYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLT 487 (625)
T ss_pred HHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCC
Confidence 999999888889999999999999999999999999999988875544333333333333221 01221
Q ss_pred hHHHHHHHHHHHc-CChHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH-
Q 005454 390 VSWNSMINGYAQN-GQDLE-ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM- 466 (696)
Q Consensus 390 ~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l- 466 (696)
..-..+-...++. -++.+ ....-.+|.+..+.|. ..+.++-.+.+.|..++|.++|..+.+.++-.|.....++|
T Consensus 488 p~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t--~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 488 PEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPAT--SLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChh--HHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 1111111111110 01111 1222334444444443 34444445677888888888888776555555555555544
Q ss_pred --HHHHhccCCHHHHHHHHHhC
Q 005454 467 --INLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 467 --i~~~~~~g~~~~A~~~~~~~ 486 (696)
++.-.+......|...++-+
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 44455667777777777655
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=7.1e-12 Score=120.75 Aligned_cols=413 Identities=11% Similarity=0.063 Sum_probs=271.5
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHH-HhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC
Q 005454 9 QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQ-SHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL 87 (696)
Q Consensus 9 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 87 (696)
=+++.|++.|++.++..-..|++-.+.....+..-+.+ .+..+.+.|-++..+| +.|++.+ ++-+...
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd---L~~E~~P 204 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD---LLFETLP 204 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH---HHHhhcC
Confidence 46788999999999988888888766444444443332 2333444443333333 4565544 4444555
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSAL 163 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 163 (696)
+...++..||.+.+|--..+.|+.++.+-.. -+..++|.+|.+-+-.. ..+++.+|....+.||..||++++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 5778999999999999999999999998864 36678898887644332 278999999999999999999999
Q ss_pred HHHHccCChHH----HHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHH-HHHHHHHhcCC------------CChhHHH
Q 005454 164 NACAQLLDLRR----GKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEID-KARWLFDRMNN------------RNLVSWN 226 (696)
Q Consensus 164 ~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~------------~~~~~~~ 226 (696)
++.++.|+++. +.+++.+|.+.|++|...+|..+|..+.+.++.. .|..++..+.. .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998776 4678899999999999999999999999888764 35544444421 3455678
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcC----CCCC---cchHHHHHHHHHhcCCHHHHHHHHHhccC----CChhHHHHHH
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQLLG----LNPD---EVTVSNILGACFQTGRIDDAGRLFHVIKE----KDNVCWTTMI 295 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~---~~t~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li 295 (696)
..+..|.+..+.+-|.++-.-+.... +.|+ .+-|..+..+.+.....+.-...++.|.+ ++..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 88888888888888888766554321 3333 23467777788888999999999999885 3556666777
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-Ch
Q 005454 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VT 374 (696)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 374 (696)
.+..-.|.++-.-+++.++...|...+... .+.++..+.+..+.|+...-..+-...+++- ++
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l----------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDL----------------REEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHH----------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 788888888888888888877654333222 2333333444333333222222222222221 11
Q ss_pred HHH-HHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 375 DDA-WTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN----LKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 375 ~~A-~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
.++ ...-.++. +-.....+.+...+.+.|..++|.++|.-..+.+ ..|......-++.+-.......+|...+
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 111 01111111 2233455556666667777777777777765443 2233333445555666667777777777
Q ss_pred HHhHH
Q 005454 448 DSISA 452 (696)
Q Consensus 448 ~~m~~ 452 (696)
+-|..
T Consensus 585 Q~a~~ 589 (625)
T KOG4422|consen 585 QLASA 589 (625)
T ss_pred HHHHH
Confidence 76654
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=3.9e-11 Score=126.52 Aligned_cols=516 Identities=14% Similarity=0.157 Sum_probs=318.4
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc---CCCCCcchHHHHHHHHHccCChhHHHHHH
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK---MPLRDIISWNALLSAHARSGSVQDLRALF 113 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~f 113 (696)
..|+...|..+.+.+++..|.....|-.|...|-+.|+..++...+-. ....|...|-.+.....+.|+++.|+-.|
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 458999999999999999998889999999999999999998875433 34458899999999999999999999999
Q ss_pred hcCCCCCcchHH---HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hH----HHHHHHHHccCChHHHHHHHHHHHHc
Q 005454 114 DKMPIRDSVSYN---TAIAGFANKGFSREALQVFSRMQKDRFEPTDY-TH----VSALNACAQLLDLRRGKQIHGKIVVG 185 (696)
Q Consensus 114 ~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~----~~ll~~~~~~~~~~~a~~~~~~~~~~ 185 (696)
.+..+.+..-|- --+..|-+.|+...|++-|.++.+... |... -+ -.++..+...++-+.|.+.+......
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 998764443343 345678889999999999999987632 3322 22 23445566667778888887776653
Q ss_pred -CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--------------------------CChhHHH----HHHHHHHh
Q 005454 186 -NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--------------------------RNLVSWN----LMISGYLK 234 (696)
Q Consensus 186 -g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------------~~~~~~~----~li~~~~~ 234 (696)
+-..+...++.++.+|.+...++.|......+.. ++..+|+ -++-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 3344566778888889888888888776655432 1111111 11222333
Q ss_pred CCCchHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHHH
Q 005454 235 NGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDAL 308 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 308 (696)
....+....+.....+.. +.-+...|.-+..+|...|++.+|..+|..+... +...|-.+..+|...|..++|+
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 333333333334444444 2333445666666677777777777777666532 4456666667777777777777
Q ss_pred HHHHHhccCCCCCCc-cchHHHHHHHHhhcCchhHHHHHHHHH--------HhCCCCchHHHHHHHhhHHhcCChHHHHH
Q 005454 309 ILFNEMLSEDVRPDK-FSISSVVSSCAKLASLYHGQVVHGKAV--------VLGVDDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 309 ~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
+.|...+.. .|+. ..-.++-..+...|+.++|.+.+..+. ..+..|+..+.-...+.|.+.|+.++=..
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 777666642 3332 233344445556666666666666532 22233344444444455555555443222
Q ss_pred HHhcCC-----------------------------------------------------------------CCCchHH--
Q 005454 380 VFNMMP-----------------------------------------------------------------TRNVVSW-- 392 (696)
Q Consensus 380 ~~~~~~-----------------------------------------------------------------~~~~~~~-- 392 (696)
+-..|. .-...-|
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 111110 0011122
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHH
Q 005454 393 --NSMINGYAQNGQDLEALALYDKLLQENL--KPDSF--TF-VSVLSACLHADLFERGQNHFDSISAVHGITPS---LDH 462 (696)
Q Consensus 393 --~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~--t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 462 (696)
.-++.++++.++.++|+.+...+..... .++.. .+ ...+.++...+++..|..++..|...++...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3457788899999999999988877542 22221 22 33456677889999999999988875443322 234
Q ss_pred HHHHHHHHh-----------------------------------ccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHH----
Q 005454 463 YACMINLLG-----------------------------------RSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVC---- 502 (696)
Q Consensus 463 ~~~li~~~~-----------------------------------~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~---- 502 (696)
|++....+. ..+.+..|+..+-+ ....||....+.++..-
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 443222222 23444555443322 11234433333322211
Q ss_pred -------HhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 503 -------AMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 503 -------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
.+|-.+-.+...+.+-.++... ...++..++.+|-..|-..-|..++++..+-
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 1222344566666666665533 5678899999999999999999999988763
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=3.7e-10 Score=114.68 Aligned_cols=479 Identities=12% Similarity=0.093 Sum_probs=372.6
Q ss_pred hHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcC
Q 005454 40 ELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKM 116 (696)
Q Consensus 40 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 116 (696)
+...|+-++.++...-|.+.. |..+|++..-++.|.++++...+ .+...|.+-...--..|+.+...++.++-
T Consensus 391 ~~~darilL~rAveccp~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444466666666665544323 44556667778888888887764 48888887777777889998888888764
Q ss_pred C--------CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--chHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 005454 117 P--------IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD--YTHVSALNACAQLLDLRRGKQIHGKIVVGN 186 (696)
Q Consensus 117 ~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 186 (696)
. .-|...|-.=...+-..|..-.+..+......-|+.-.. .||..-...|.+.+.++-++.+|...++.
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv- 545 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV- 545 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-
Confidence 3 124455666666777778887788888777776665433 48888889999999999999999999886
Q ss_pred CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHH
Q 005454 187 LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNI 263 (696)
Q Consensus 187 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 263 (696)
++.+..+|...+..--..|..+.-..+|++... ...+.|-...+.+...|+...|..++....+.. +-+...|..-
T Consensus 546 fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaa 624 (913)
T KOG0495|consen 546 FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAA 624 (913)
T ss_pred ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 355778888888887788999999999988865 455678778888999999999999999998875 3367788888
Q ss_pred HHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCch
Q 005454 264 LGACFQTGRIDDAGRLFHVIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLY 340 (696)
Q Consensus 264 l~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 340 (696)
+........++.|+.+|.+... ++...|.--+....-.++.++|++++++.++. -|+ ...|..+.+.+-+.++++
T Consensus 625 vKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 8889999999999999988764 56667877777777889999999999998874 344 345666777788888889
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.|+..|..-.+.- +..+..|-.|...-.+.|.+-.|..+|++.. ..|...|-..|..-.+.|..+.|..+.-+.++
T Consensus 703 ~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888887665543 3467788889999999999999999999776 35778999999999999999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCH-HHH
Q 005454 418 ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNS-LIW 495 (696)
Q Consensus 418 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~ 495 (696)
. .+-+...|..-|...-+.++-......+. ...-|..+.-.+..+|-...++++|.+.|.+. ...||. .+|
T Consensus 782 e-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 782 E-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred h-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 5 34455667666666656555433333332 34556777778888999999999999999874 445654 489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.-+..-+..||.-+.-..++.+...-+|.....|...+.
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence 889999999999999999999999999988877776653
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.58 E-value=1.2e-11 Score=129.54 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=131.3
Q ss_pred chHHHHHHHHhhcCchhHHHHHHHHHHh--CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC-chHHHHHH
Q 005454 325 SISSVVSSCAKLASLYHGQVVHGKAVVL--GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN-VVSWNSMI 396 (696)
Q Consensus 325 t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li 396 (696)
.|..++.-+.....++.|..+.++.... .+..|...+..+.+...+.+...++..++.++.+ ++ ..+.--++
T Consensus 493 ~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~l 572 (1088)
T KOG4318|consen 493 LYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLL 572 (1088)
T ss_pred HHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHH
Confidence 3555666666666666666666655432 2334556677778888888888888888877763 11 12333455
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCC------------------------------CCHHHHHHHHHHH------------
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLK------------------------------PDSFTFVSVLSAC------------ 434 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~------------------------------p~~~t~~~ll~a~------------ 434 (696)
.+.+..|+.+...++++-+...|+. |.+.....+.+..
T Consensus 573 ns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~m 652 (1088)
T KOG4318|consen 573 NSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTM 652 (1088)
T ss_pred hhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHH
Confidence 5556666666666666555544422 2211111111111
Q ss_pred ---------hcCCcHHHHHHHHHHh--HHhhC---------CCCC---------hHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 435 ---------LHADLFERGQNHFDSI--SAVHG---------ITPS---------LDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 435 ---------~~~g~~~~a~~~~~~m--~~~~~---------~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
.+.|++.++.++.+-= ..+++ +.|- ......|+..|.+.|+++.|..++.+
T Consensus 653 Dls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK 732 (1088)
T KOG4318|consen 653 DLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNK 732 (1088)
T ss_pred hhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhh
Confidence 1112221221111100 00000 0000 01122366678888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 486 LPHKPNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 486 ~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
++..|+..+...|+..++++. |+-++....+++.++.|..+ ..|.-.+-...+....+-|.+.+.+..++..
T Consensus 733 ~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 733 DQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred CcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 887788887777777776654 45566666666666665443 3455556666666677788999999888744
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.55 E-value=1.4e-14 Score=144.01 Aligned_cols=255 Identities=15% Similarity=0.123 Sum_probs=110.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHH-HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSV-VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
+...+.+.|++++|++++++......+|+...|-.+ ...+...++.+.|...+..+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 345566677777777777655443223444444333 33444567777777777777766544 45556666666 6888
Q ss_pred ChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 373 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
++++|..++...- .++...+..++..+...++++++.++++++.... .+++...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887654 3566778888888999999999999999977633 345666777788888999999999999999
Q ss_pred hHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 450 ISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 450 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
..+. .| +......++..+...|+.+++.++++.... +.|...|..+..++...|+.++|...++++.+..|+|+
T Consensus 172 al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 172 ALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9863 45 477888899999999999998777765422 34556788999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.....+++++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987664
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.8e-11 Score=118.77 Aligned_cols=403 Identities=14% Similarity=0.126 Sum_probs=249.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 201 (696)
+...-.-|.++|.+++|++.|.+..+. .|| ...|...-.+|...|+++.+.+--...++.. |+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444556688889999999999998864 677 5556666666778899988887777766543 33 34455556677
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHH--------HHH-cC--CCCCcchHHHHHHHHHhc
Q 005454 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQE--------MQL-LG--LNPDEVTVSNILGACFQT 270 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~-~g--~~p~~~t~~~ll~~~~~~ 270 (696)
-..|++++|+.-. |-..+..++....-.--+.+++++ -.. .+ +-|+.....+....+-..
T Consensus 194 E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 7788888776421 111222222222111112222221 111 11 223333333332221100
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHH----Hh-cCChhHHHHHHHHhccCC-CCCCcc---------chHHHHHH--H
Q 005454 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGY----TQ-NGKEEDALILFNEMLSED-VRPDKF---------SISSVVSS--C 333 (696)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~li~~~----~~-~g~~~~A~~~~~~m~~~g-~~p~~~---------t~~~ll~~--~ 333 (696)
-. ..+..+...+...+..++ .. ...+.+|.+.+.+-.... ..++.- .-..++.+ .
T Consensus 265 ~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 265 PK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred cc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 000000000111111111 00 012233333332211100 000000 11111111 2
Q ss_pred HhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALA 410 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 410 (696)
.-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3357777788888888887655333 35556667888888888888888765 3466678777777888889999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 005454 411 LYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PH 488 (696)
Q Consensus 411 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 488 (696)
=|++.++ +.|+. ..|..+--+..+.+.+++++..|+..++ .++.-++.|+-....+...+++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988 56654 5777777777788899999999999987 55666789999999999999999999999763 33
Q ss_pred CCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 489 KPN---------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 489 ~p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|+ +.+-.+++-. .-.+|+..|+.+++++++++|....+|..|+.+-.+.|+.++|+++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 443 2333333333 244899999999999999999999999999999999999999999998764
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=8e-12 Score=121.00 Aligned_cols=442 Identities=13% Similarity=0.132 Sum_probs=289.0
Q ss_pred HHHHHH---HHhhccCchhHHHHHHHhhhhhccCCCcc--cHHHHHHHHHHccCChHHHHHHHccCCC--C------Ccc
Q 005454 25 AYTQLV---LDCTRVNDVELAKRLQSHMDLNFYEPNTT--FLHNRLLHFYAKSGKLFYARDLFDKMPL--R------DII 91 (696)
Q Consensus 25 ~~~~ll---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~--~------~~~ 91 (696)
||+.|+ +.+. .+.-..+|+..+.-+++...-|+ .+--.+-..+.+.+.+.+|++.+.-... | ...
T Consensus 200 tfsvl~nlaqqy~--~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYE--ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhh--hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 555444 3343 44556777777777776654444 4444456677888889999887765443 1 223
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc------------c
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMP--IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD------------Y 157 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------------~ 157 (696)
..+.+.-.+.+.|++++|+..|+... .||..+--.|+-++..-|+.++..+.|.+|..-...||. .
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555556788999999999999875 467665445555566678899999999999764333332 2
Q ss_pred hHHHHHHH-----HHccC--ChHHHHHHHHHHHHcCCCCchh-------------HH--------HHHHHHHHcCCCHHH
Q 005454 158 THVSALNA-----CAQLL--DLRRGKQIHGKIVVGNLGGNVF-------------VR--------NALTDMYAKGGEIDK 209 (696)
Q Consensus 158 t~~~ll~~-----~~~~~--~~~~a~~~~~~~~~~g~~~~~~-------------~~--------~~li~~~~~~g~~~~ 209 (696)
..+..|.. .-+.+ +-+.+.-.-..++.--+.|+-. .+ -.-.--|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222211 11111 1111111111111111111110 00 011235889999999
Q ss_pred HHHHHHhcCCCChhHHHHH-----HHHHHhC-CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 210 ARWLFDRMNNRNLVSWNLM-----ISGYLKN-GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 210 A~~~~~~~~~~~~~~~~~l-----i~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
|.+++.-....|..+-.+. +--|.+- .++..|...-+...... .-+....+.-.......|++++|.+.+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 9999888776554432222 2223333 34556665555443321 112222222222345679999999999998
Q ss_pred cCCChhHHHHHH---HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KEKDNVCWTTMI---VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
...|...-.+|. -.+-..|+.++|++.|-++..- +..+...+..+.+.|....+...|++++.++... ++.|+.+
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i 594 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI 594 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence 877665444433 3466789999999999887542 3445666777888888888999999988887654 4568899
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~ 436 (696)
.+-|.+.|-+.|+-..|.+.+-.-- ..|+.+..-|...|....-+++|+..|++..- +.|+..-|..++..| .+
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHh
Confidence 9999999999999999988754332 45777777788888889999999999998876 799999998888765 46
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.|+++.|.+++..+.+ .++-+.+...-|+...+..|.
T Consensus 673 sgnyqka~d~yk~~hr--kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cccHHHHHHHHHHHHH--hCccchHHHHHHHHHhccccc
Confidence 8999999999999876 677788888888888877774
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=1.2e-09 Score=107.01 Aligned_cols=480 Identities=14% Similarity=0.115 Sum_probs=330.9
Q ss_pred HHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChh
Q 005454 65 LLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSR 138 (696)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 138 (696)
..+.=-..+++..|..+|++... ++...|-.-+.+=.++..+..|+.+++.... | -...|--.+..--..|+..
T Consensus 79 YaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 79 YAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 33444456778888889988875 4677787888888899999999999987642 2 1234555555556678899
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 139 EALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 139 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
.|.++|++-.+ ..|+...|.+.++.=.+.+.++.|+.+++..+-. .|++..|-.....=.++|.+..|+.+|+...
T Consensus 159 gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999988775 4799999999998888888999999999887764 4788888888888888999999999998776
Q ss_pred C--C----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhcCCHHHHHHH--------HH
Q 005454 219 N--R----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE---VTVSNILGACFQTGRIDDAGRL--------FH 281 (696)
Q Consensus 219 ~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~g~~~~A~~~--------~~ 281 (696)
+ . +...+++....=.++..++.|.-+|+-.++. -|.. ..|......--+.|+....... ++
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 4 1 2234555555555677788888888877765 2332 3333333333344554433332 22
Q ss_pred hccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc-------chHHHHHHH---HhhcCchhHHHHHHH
Q 005454 282 VIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-------SISSVVSSC---AKLASLYHGQVVHGK 348 (696)
Q Consensus 282 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~ 348 (696)
.+... |-.+|-..+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+.++++.
T Consensus 313 ~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~ 391 (677)
T KOG1915|consen 313 KEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQA 391 (677)
T ss_pred HHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222 5557777777777889999999999999875 666321 222222222 346788899999999
Q ss_pred HHHhCCCCchHHHHHHHhhH----HhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005454 349 AVVLGVDDDLLVSSALIDMY----CKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422 (696)
Q Consensus 349 ~~~~~~~~~~~~~~~li~~y----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (696)
.++. ++....++.-+=-+| .++.++..|.+++.... -|....+-..|..-.+.++++....+|++.++-+ +-
T Consensus 392 ~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe 469 (677)
T KOG1915|consen 392 CLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PE 469 (677)
T ss_pred HHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hH
Confidence 8883 333455555554444 46889999999998765 3566677888888888999999999999999843 33
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSV 501 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~ 501 (696)
|-.+|......-...|+.+.|..+|+-+.+...+......|.+.|+-=...|.++.|..+++++.. .+...+|-++..-
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~f 549 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKF 549 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 457777777766788999999999998887433333345677777777889999999999988644 4556677776543
Q ss_pred HH-----hcC-----------ChHHHHHHHHHHHhcC----CCCC--chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 CA-----MKG-----------DIKHGEMAARHLFELE----PINA--GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 ~~-----~~g-----------~~~~a~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
-. ..+ ++..|..+|+++...- |... ......-+.-...|.-.+...+-++|.
T Consensus 550 e~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 550 EASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred hccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 32 223 5678888888876533 2211 122233444455666666666666663
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.8e-09 Score=105.77 Aligned_cols=191 Identities=9% Similarity=0.106 Sum_probs=117.8
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
.+...+.+-|.-.++.+.|...|++..+ .....|+-|..-|....+...|++-++..++-+ +-|...|-.|.++|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 3444555566666666666666665543 233466666666776677777777777766642 445566667777777
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
-.++..-|+-+|++... --+-|...|.+|.+.|.+.++.++|++-|++... ..+...+..|...+.+-++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 66766667766666653 2233456677777777777777777777666433 2233566666777777777777777
Q ss_pred HHHHHHh-------cCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 514 AARHLFE-------LEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 514 ~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.+++-++ .+|....+-.-|+.-+.+.++|++|..+....
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7766655 22333334445666677777777777665444
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=6.4e-11 Score=123.34 Aligned_cols=283 Identities=11% Similarity=0.053 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHhcCCC--Chh-HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCCHHHHHH
Q 005454 204 GGEIDKARWLFDRMNNR--NLV-SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS--NILGACFQTGRIDDAGR 278 (696)
Q Consensus 204 ~g~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~A~~ 278 (696)
.|+++.|++.+....+. ++. .|-.......+.|+++.|.+.+.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765542 222 2322233446778888888888887663 45544333 22445667777777777
Q ss_pred HHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC
Q 005454 279 LFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD 355 (696)
Q Consensus 279 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 355 (696)
.++.+.+ .++.....+...|.+.|++++|++++..+.+.+..++. ....+-
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------- 228 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------- 228 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH-------------------------
Confidence 7776653 35556667777777777777777777777765433211 110000
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
...+..++.......+.+...++++.++ +.++.....+...+...|+.++|.+++++..+. .||... .++.
T Consensus 229 --~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~ 302 (398)
T PRK10747 229 --QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLI 302 (398)
T ss_pred --HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHH
Confidence 0122223333333445566666666665 346677888888999999999999999888873 455522 2334
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+....++.+++.+..+...+. .+-|...+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++|
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred hhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 444568899999999888863 3455667888899999999999999999875 4469999888999999999999999
Q ss_pred HHHHHHHHhcC
Q 005454 512 EMAARHLFELE 522 (696)
Q Consensus 512 ~~~~~~~~~~~ 522 (696)
...+++.+.+-
T Consensus 381 ~~~~~~~l~~~ 391 (398)
T PRK10747 381 AAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHhhh
Confidence 99999987754
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=1.8e-10 Score=120.09 Aligned_cols=278 Identities=14% Similarity=0.106 Sum_probs=161.7
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|++++|.+.+....+..-.| ...|.....+..+.|+++.+...+..+.+................+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777766655432111 1223333344467777888888887776643332223323446677888888888888
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 214 FDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 214 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 888765 35567778888888888888888888888877654322 12333344444445556666666666
Q ss_pred cC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
+. .++.....+...+...|+.++|.+++.+..+. .||.. ..++.+....++.+.+.+..+...+..+. |...
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l 330 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLL 330 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-CHHH
Confidence 52 35666777777777778888887777777652 33321 11122222335555555555555444332 3333
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+..+...+.+.|++++|.+.|+...+ ..|+..++..+..++.+.|+.
T Consensus 331 -------------------------------~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 331 -------------------------------WSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred -------------------------------HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCH
Confidence 44444555555555555555555554 345555555555555555555
Q ss_pred HHHHHHHHHh
Q 005454 441 ERGQNHFDSI 450 (696)
Q Consensus 441 ~~a~~~~~~m 450 (696)
++|.+++++.
T Consensus 378 ~~A~~~~~~~ 387 (398)
T PRK10747 378 EEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.43 E-value=3.3e-10 Score=118.70 Aligned_cols=223 Identities=11% Similarity=0.008 Sum_probs=120.8
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH-------HHHHHhh
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV-------SSALIDM 367 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~ 367 (696)
...+.+.|++++|++.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555554432 11223344444445555555555555555555443222111 1111111
Q ss_pred HHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHhcCCcHH
Q 005454 368 YCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF---VSVLSACLHADLFE 441 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~ 441 (696)
-......+.....++..+. .++..+..+...+...|+.++|.+++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1122233444555555553 47778888888888889999999998888884 4554321 11111223346667
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS---LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777776665322222224455666667777777777777762 333566666666666666777777776666665
Q ss_pred Hh
Q 005454 519 FE 520 (696)
Q Consensus 519 ~~ 520 (696)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 43
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.3e-11 Score=126.16 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=198.2
Q ss_pred CChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC--CCchHHHHHHHhhHHhcCChHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV--DDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
-+..+|+.+|...... +.-+......+..+|-..++.++++.+|+.+.+... -.+..+|++.+--+-+.=.+..--+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888884432 444445566777888888888889888888877543 2356677766543332222211112
Q ss_pred HHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 380 VFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 380 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
-+-.+.+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|.... ..
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~ 484 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GV 484 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cC
Confidence 22223345678999999999999999999999999988 667 46788887777788888999999997665 35
Q ss_pred ChHHHHH---HHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 459 SLDHYAC---MINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 459 ~~~~~~~---li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+..+|++ +.-.|.+.++++.|+-.|++. .+.| +.++...+...+.+.|+.++|.+++++++.++|.|+..-...+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 6666665 456788999999999998774 4556 4556777778888899999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcC
Q 005454 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAG 603 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g 603 (696)
.++...+++++|+..++++++- -|+..-++..+..+.++|...-
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--------------------------vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--------------------------VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--------------------------CcchHHHHHHHHHHHHHHccch
Confidence 9999999999999999998762 2444456667777777775543
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.2e-08 Score=100.05 Aligned_cols=455 Identities=11% Similarity=0.064 Sum_probs=322.8
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALN 164 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 164 (696)
+...|-.-...=-..+++..|+.+|+.... ++...|---+..-.++.....|..++++.... -|-+. .|---+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 444555555555567888899999998874 57778888889999999999999999998864 34332 2223333
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHH
Q 005454 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCI 242 (696)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~ 242 (696)
.=-..|++..|+++|+.-.. ..|+...|++.|+.=.+...++.|+.++++..- |++.+|--....=.++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 33467899999999998876 579999999999999999999999999999764 99999999999889999999999
Q ss_pred HHHHHHHHc-C-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CC-ChhHHHHHHHHHHhcCChhHHHHH-----
Q 005454 243 DLFQEMQLL-G-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EK-DNVCWTTMIVGYTQNGKEEDALIL----- 310 (696)
Q Consensus 243 ~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~----- 310 (696)
.+|....+. | -..+...++++..--.++..++.|.-+|.-.. .. ....|..+..-=-+-|+.....+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999887764 1 01122334444444456777888888876443 22 233444444444445554443332
Q ss_pred ---HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch-HHHHHHHh--------hHHhcCChHHHH
Q 005454 311 ---FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL-LVSSALID--------MYCKCGVTDDAW 378 (696)
Q Consensus 311 ---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~--------~y~~~g~~~~A~ 378 (696)
|+.+... -+-|-.+|--.++.-...|+.+...++++.++..-++... ..+.-.|. .-....+.+.+.
T Consensus 308 k~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2333332 3456667777777778889999999999999875443221 11211111 113467888888
Q ss_pred HHHhcCC---CCCchHHHHHHH----HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 379 TVFNMMP---TRNVVSWNSMIN----GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 379 ~~~~~~~---~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
++|+... +....|+..+-- --.++.+...|.+++...+. .-|-..+|...|..-.+.+.++....+++...
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8887654 334445444433 33467888999999887764 68888999999988889999999999999987
Q ss_pred HhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 452 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
. --+-+..+|.....+=...|+.+.|..+|+-...+|. ...|.+.+.--...|.++.|..+++++++..+...
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 5 2233457787778877889999999999987766653 34677777777788999999999999999887544
Q ss_pred hHHHHHHHHh-----hcC-----------ChhHHHHHHHHhh
Q 005454 528 PYIMLSNMYA-----ACG-----------RWEDVASIRSSMK 553 (696)
Q Consensus 528 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 553 (696)
.+...+.--. +.| ....|.++|++..
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 6666666544 334 4567777777654
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=5.7e-10 Score=111.96 Aligned_cols=262 Identities=12% Similarity=0.043 Sum_probs=207.7
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
++.....-..-+...+++.+.++++....+. .++....+..-|.++...|+...-..+-..+++.-+ ..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHH
Confidence 4444555566677889999999999998875 455555566666677788887777777667776544 46778888888
Q ss_pred hHHhcCChHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 005454 367 MYCKCGVTDDAWTVFNMMPTRN---VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (696)
.|.-.|+.++|++.|.+...-| ...|-....+|+-.|..++|+..+...-+. ++-....+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888999999999999876443 348999999999999999999999887762 122233344455568889999999
Q ss_pred HHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHHhcCChHHHHH
Q 005454 444 QNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH--------KP-NSLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~p-~~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
.++|.+.. ++.|+ +..++-+.-+....+.+.+|..+|+.... ++ -..+|+.|..+|++.+.+++|..
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999886 55554 56777777777888999999999876421 12 34578999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+++++.+.|.++.+|..++-+|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987643
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=6.8e-10 Score=116.37 Aligned_cols=279 Identities=17% Similarity=0.102 Sum_probs=175.7
Q ss_pred HhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHH
Q 005454 132 ANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKA 210 (696)
Q Consensus 132 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 210 (696)
...|+++.|.+.+.+..+. .|+.. .+.....+..+.|+.+.+.+++....+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578899999888877664 45433 33444566677889999999998887654333334455567888889999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHH-------HhcCCHHHHHHHH
Q 005454 211 RWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGAC-------FQTGRIDDAGRLF 280 (696)
Q Consensus 211 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-------~~~g~~~~A~~~~ 280 (696)
...++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+.......-..++ ......+.....+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988876 355678888999999999999999999999887543332211111111 2222344555566
Q ss_pred HhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchH-HHHHHH--HhhcCchhHHHHHHHHHHhCC
Q 005454 281 HVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSIS-SVVSSC--AKLASLYHGQVVHGKAVVLGV 354 (696)
Q Consensus 281 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~--~~~~~~~~a~~~~~~~~~~~~ 354 (696)
...+. .++..+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++.+.+.+.++...+..+
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 66653 47788888999999999999999999999874 34443210 122221 223455555555555554432
Q ss_pred CCch--HHHHHHHhhHHhcCChHHHHHHHhc--C--CCCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 355 DDDL--LVSSALIDMYCKCGVTDDAWTVFNM--M--PTRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 355 ~~~~--~~~~~li~~y~~~g~~~~A~~~~~~--~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
. |+ ....++...+.+.|++++|.+.|+. . ..|+...+..+...+.+.|+.++|.++|++.
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 23 4444555555555555555555552 2 1344444555555555555555555555543
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=4.7e-11 Score=122.14 Aligned_cols=274 Identities=15% Similarity=0.083 Sum_probs=187.7
Q ss_pred HHHHHHHHHhccCC--C-hhHHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCCccchHHHHHHHHhhcCchhHHHHHH
Q 005454 273 IDDAGRLFHVIKEK--D-NVCWTTMIVGYTQNGKEEDALILFNEMLSED--VRPDKFSISSVVSSCAKLASLYHGQVVHG 347 (696)
Q Consensus 273 ~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 347 (696)
..+|...|..++.. | ......+..+|...+++++|.++|+.+.+.. ..-+..+|++.+-.+-+. .+...+.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La 410 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA 410 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence 45555555554321 2 2233344556666666666666666665421 111334555555433221 1122222
Q ss_pred -HHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 348 -KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN---VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 348 -~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+.| ..+|+-+..-+.....++.|...|+..+. +.|+
T Consensus 411 q~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r 487 (638)
T KOG1126|consen 411 QDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR 487 (638)
T ss_pred HHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence 222222 3467888888889988899999999988877543 45777777777888888888888888866 4454
Q ss_pred H-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 005454 424 S-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLL 499 (696)
Q Consensus 424 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll 499 (696)
. ..|..+...|.+.++++.|.-.|+.+. .+.|. .....++...+-+.|+.++|++++++.- ..| |+..--.-+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 4 467777778888999999998888876 45565 4566677788888999999999998742 233 444444445
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+...+++++|...+|++.++-|++...|.+++.+|.+.|+.+.|+.-|.-+.+-.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 566778899999999999999999999999999999999999999998888776644
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.38 E-value=4.1e-07 Score=93.01 Aligned_cols=467 Identities=13% Similarity=0.146 Sum_probs=262.9
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCC----------CcchHHHHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR----------DSVSYNTAIA 129 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----------~~~~~~~li~ 129 (696)
.+|.-.+......|-++-+.+++++..+-++..-+--|..+++.+++++|.+.+...... +-..|+.+-.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 455555666666666667777777766666666666777777777777777766655321 2223444444
Q ss_pred HHHhCCChhHHH---HHHHHhHHCCCCCCcc--hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc-
Q 005454 130 GFANKGFSREAL---QVFSRMQKDRFEPTDY--THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK- 203 (696)
Q Consensus 130 ~~~~~g~~~~A~---~l~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 203 (696)
..+++.+.-..+ .+++.+.. .-||.. .|.+|..-|.+.|.++.|..+++..+..-. .+.-++.+-+.|+.
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHH
Confidence 444332222211 12222221 123322 344455555555555555555554443311 11111222222211
Q ss_pred ---------------CC------CHHHHHHHHHhcCC---------------CChhHHHHHHHHHHhCCCchHHHHHHHH
Q 005454 204 ---------------GG------EIDKARWLFDRMNN---------------RNLVSWNLMISGYLKNGQPKKCIDLFQE 247 (696)
Q Consensus 204 ---------------~g------~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~ 247 (696)
.| +++-...-|+.+.. .++..|..-+.. ..|+..+-...|.+
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHH
Confidence 11 12223333333332 233445444433 35677788888888
Q ss_pred HHHcCCCCC------cchHHHHHHHHHhcCCHHHHHHHHHhccCCCh-------hHHHHHHHHHHhcCChhHHHHHHHHh
Q 005454 248 MQLLGLNPD------EVTVSNILGACFQTGRIDDAGRLFHVIKEKDN-------VCWTTMIVGYTQNGKEEDALILFNEM 314 (696)
Q Consensus 248 m~~~g~~p~------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m 314 (696)
.... +.|. ...|..+.+.|-..|+++.|+.+|++..+-+- .+|-.-...=.+..+++.|+++.++.
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 7764 3332 23477788889999999999999998875432 24555566667788899999998887
Q ss_pred ccCCCCCC-----------------ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 315 LSEDVRPD-----------------KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 315 ~~~g~~p~-----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
....-.|. ...|+..+..--..|-++..+.+++.+++..+.....+. .....+....-++++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~-NyAmfLEeh~yfees 530 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIII-NYAMFLEEHKYFEES 530 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhhHHHHHH
Confidence 64211111 112344444445567888888999999988775333332 233344556667889
Q ss_pred HHHHhcCC----CCCch-HHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hcCCcHHHHHHHH
Q 005454 378 WTVFNMMP----TRNVV-SWNSMINGYAQN---GQDLEALALYDKLLQENLKPDSFTFVSVLSAC--LHADLFERGQNHF 447 (696)
Q Consensus 378 ~~~~~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~ 447 (696)
.++|++-. -|++. .|++.+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+-+- ..-|....|+.++
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99998765 25554 788877766642 467899999999999 6777765444444432 2458888999999
Q ss_pred HHhHHhhCCCCC--hHHHHHHHHH----Hh---ccCCHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHH
Q 005454 448 DSISAVHGITPS--LDHYACMINL----LG---RSSDVDKAVDLIKSLPHKPNSLI---WSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 448 ~~m~~~~~~~p~--~~~~~~li~~----~~---~~g~~~~A~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~ 515 (696)
+++.. ++.+. ...|+..|.- |+ ..+-+++|++. + ||..+ ---....-.+.|.+++|..++
T Consensus 610 erat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L---p~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 610 ERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L---PDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 98765 55554 3456655532 22 11223333332 2 23221 122223335667777777777
Q ss_pred HHHHhcCCC--CCchHHHHHHHHhhcCChh
Q 005454 516 RHLFELEPI--NAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 516 ~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 543 (696)
...-++-|+ +...|...-+--.+.|+-+
T Consensus 682 a~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 682 AHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 766665533 2334555555566666633
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.36 E-value=4.7e-12 Score=125.93 Aligned_cols=252 Identities=17% Similarity=0.113 Sum_probs=77.6
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN-ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 128 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
...+.+.|++++|++++.+......+|+...|-.++. .+...++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4556666777777777654443322344444433332 334456666666666666665433 44555555555 56677
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 207 IDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 207 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
+++|.+++...-+ ++...+..++..+.+.++++++.++++...... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777766655433 445556666666777777777777777765432 2344455555556666666666666666655
Q ss_pred cC--C-ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE--K-DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
.+ | |....+.++..+...|+.+++.+++....... +.|...+..+..++...|+.+.|...+....+.... |+.+
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-d~~~ 250 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD-DPLW 250 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-cccc
Confidence 42 2 45556666666666666666666666655432 344445555566666666666666666666554432 5555
Q ss_pred HHHHHhhHHhcCChHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
...+.+.+...|+.++|..+.+.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccc
Confidence 55566666666666666655543
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=3.1e-09 Score=111.83 Aligned_cols=529 Identities=10% Similarity=0.025 Sum_probs=311.4
Q ss_pred hhhhHHH--HHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc-cHHHHHHHHHHccCChHHH
Q 005454 2 KAKHKLR--QAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT-FLHNRLLHFYAKSGKLFYA 78 (696)
Q Consensus 2 ~~~~~~~--~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a 78 (696)
.+...+. .+|..+..+|+.|+..||.+++..++ ..|+.+.|- ++..+.....+.. .+++.++......++.+.+
T Consensus 2 qne~kf~ptnfla~~e~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp 78 (1088)
T KOG4318|consen 2 QNEVKFFPTNFLALHEISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP 78 (1088)
T ss_pred CcccccCcchHHHHHHHhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC
Confidence 3444455 78889999999999999999999999 888988887 6666666666666 8999999999999998887
Q ss_pred HHHHccCCCCCcchHHHHHHHHHccCChhH---HHHHHhcCCC---------C-------------CcchHHHHHHHHHh
Q 005454 79 RDLFDKMPLRDIISWNALLSAHARSGSVQD---LRALFDKMPI---------R-------------DSVSYNTAIAGFAN 133 (696)
Q Consensus 79 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~f~~~~~---------~-------------~~~~~~~li~~~~~ 133 (696)
. +|-..+|+.|..+|.+.|++.. .++.+..+.. + ....-...+....-
T Consensus 79 k-------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 79 K-------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred C-------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 7 7788999999999999998765 2221211110 0 01112234444555
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|.++.+++++..|......- ++...|+-+..... -.+++.......--.|+..++.++++.-...|+++.|..+
T Consensus 152 eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 667777777776665332110 12123444443332 2233333222221158999999999999999999999999
Q ss_pred HHhcCCCCh----hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 005454 214 FDRMNNRNL----VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV 289 (696)
Q Consensus 214 ~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 289 (696)
+.+|.+... .-|..|+-+ .+....+..+++-|.+.|+.|+..|+..-+-.+...|....+....+.-.--...
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAa 303 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAA 303 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHH
Confidence 999987432 234455544 7888889999999999999999999988887777766533332221111111122
Q ss_pred HHHHHHHHHHhcCCh-----hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC---CchHHH
Q 005454 290 CWTTMIVGYTQNGKE-----EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD---DDLLVS 361 (696)
Q Consensus 290 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~ 361 (696)
.+..+..+...+.+. .-....+.+..-.|+......|..... ....|.-+..+++-..+..-... .++..+
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 233333331111111 112222222222333333322322222 22356666666666665442211 122333
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH---------------cCChHHHHHHHHHHHHC----CCCC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ---------------NGQDLEALALYDKLLQE----NLKP 422 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---------------~g~~~~A~~l~~~m~~~----g~~p 422 (696)
..++. +.|.+...+....-.-...+... .-+...++.-+..+... -..|
T Consensus 383 ~~~lr------------qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~ 450 (1088)
T KOG4318|consen 383 GALLR------------QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEP 450 (1088)
T ss_pred HHHHH------------HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhccccc
Confidence 33333 33333332221111001111111 11111111111111110 0111
Q ss_pred -------CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC-----C
Q 005454 423 -------DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK-----P 490 (696)
Q Consensus 423 -------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----p 490 (696)
=...-+.++..|...-+..++...-+.... +-+ ...|..||+.+....++++|..+..+...+ -
T Consensus 451 ~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~L 526 (1088)
T KOG4318|consen 451 WPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHL 526 (1088)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhc
Confidence 112334455555555555555544333322 111 267899999999999999999998876532 3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFEL---EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
|..-+..+.....+++....+..+++.+.+. .|........+.+..+..|+.+...++.+-+...|+.- .|.-|.
T Consensus 527 d~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 527 DLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM 604 (1088)
T ss_pred ccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence 4455677788888888888888888877652 23334556778888899999999999999998888865 355553
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-09 Score=102.74 Aligned_cols=256 Identities=11% Similarity=0.073 Sum_probs=200.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC--CchHHHHHHHhhHHhc
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD--DDLLVSSALIDMYCKC 371 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~ 371 (696)
+..++....+.++++.-.......|++.+...-+....+.-...+++.|+.+|+.+.+..+- .|..+|+.++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 34456666678888888888887777655555555555566778999999999999887542 3667777666433333
Q ss_pred CChH-HHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 372 GVTD-DAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 372 g~~~-~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
.++. -|..++ .+.+--+.|.-.+.+-|.-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|++-+..
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2332 233333 23333445666677888899999999999999998 45664 5677777889999999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
+.+ --+.|-..|-.|..+|.-.+...-|+-+|++... +| |...|.+|...|.+.++.++|++.|.+++..+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 985 2345678899999999999999999999988643 55 6779999999999999999999999999999988889
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|..|+++|-+.++.++|...+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987765
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=3.6e-09 Score=102.23 Aligned_cols=278 Identities=14% Similarity=0.096 Sum_probs=208.3
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWL 213 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 213 (696)
.|++.+|+.+..+-.+.+-.| ...|.....+.-+.||.+.+-+++..+.+..-+++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588999999988877765443 3456666677778899999999999988875577788888888888999999998877
Q ss_pred HHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-------chHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 214 FDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-------VTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 214 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
.++... .+.........+|.+.|++.+...++.+|.+.|+-.|+ .+|..+++-....+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 766543 67778889999999999999999999999998865554 36777777777777777766777777
Q ss_pred cC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 284 KE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 284 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...+-.+.+.++.+.-++..+...+.... ++..
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L 330 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLL 330 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhH
Confidence 63 3566677788888999999999999999888877776 22233455566666666666665554332 4467
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
+.+|...|.+.+.|.+|...|+... .++..+|+-+..++.+.|+..+|.+.+++...
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777777777777777777777554 46677777777777777777777777776554
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.1e-08 Score=99.80 Aligned_cols=494 Identities=11% Similarity=0.060 Sum_probs=299.0
Q ss_pred hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHcc--CCCCCcchHHHHHHHH
Q 005454 23 EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDK--MPLRDIISWNALLSAH 100 (696)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~ 100 (696)
..-+..+++-+. .......|+.+-.++...+.+|...| -+.+++.-.|+...|..+... +...|..+.......+
T Consensus 16 ~~~~~~~~r~~l--~q~~y~~a~f~adkV~~l~~dp~d~~-~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l 92 (611)
T KOG1173|consen 16 LEKYRRLVRDAL--MQHRYKTALFWADKVAGLTNDPADIY-WLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCL 92 (611)
T ss_pred HHHHHHHHHHHH--HHHhhhHHHHHHHHHHhccCChHHHH-HHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 344555665444 44556666666666666665554333 356777777777777666544 3456777777777888
Q ss_pred HccCChhHHHHHHhcCCC-CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 005454 101 ARSGSVQDLRALFDKMPI-RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179 (696)
Q Consensus 101 ~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 179 (696)
.+..+++.|..++..-+. .+..+|..-=. ...-..+.+. ++.. +.-....+..--..+....+.++|+..+
T Consensus 93 ~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y 164 (611)
T KOG1173|consen 93 VKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKY 164 (611)
T ss_pred HHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHH
Confidence 888888888888874321 01111100000 0000000000 0000 0000011111112233445566666666
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcC-CCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKG-GEIDKARWLFDRMNN-----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 253 (696)
.+.+... +.-+.++...-... -...+-..+|+...- .++...-.+.....-...-++....-.+-.-.|.
T Consensus 165 ~~Al~~D----~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 165 KEALLAD----AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGL 240 (611)
T ss_pred HHHHhcc----hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhh
Confidence 6665443 22222222111110 001112222222110 1111111111111000000111111111111233
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChh---HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 254 NPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNV---CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
.-+......-..-+...+++.+..++++.+.+.|+. .+..-|..+...|+..+-..+=.+|.+. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 445555555666678889999999999988865544 4556677888899988888888888875 555678899998
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHH
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 407 (696)
--|...|...+|++.+.+....... -...|-++...|+-.|.-|+|...+....+ ..-..+--+..-|.+.+..+-
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 8888999999999999998776543 345788889999999999999887765432 121222234556788899999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh-CCC----CChHHHHHHHHHHhccCCHHHHHH
Q 005454 408 ALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH-GIT----PSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
|.+.|.+... +-|+ +...+-+.-...+.+.+.+|..+|+.....- .+. -...+++.|..+|.+.+++++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 5555 4555555555566889999999999876310 111 134568899999999999999999
Q ss_pred HHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 482 LIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 482 ~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+++.. . +.+..++.++.-.+...|+++.|...|.+++.+.|++..+-..|..+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 998743 2 45778999999999999999999999999999999987766666544
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=6.6e-10 Score=107.42 Aligned_cols=197 Identities=12% Similarity=0.045 Sum_probs=161.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
....+..+...|...|++++|...|+... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 35566777888888999999998888665 2345678888889999999999999999988853 3445677778888
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|...++.+.+..........+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 889999999999999987632222345667778889999999999999998743 234 456788889999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...++++++..|.++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888888999999999999999999887754
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.5e-07 Score=100.31 Aligned_cols=504 Identities=12% Similarity=0.122 Sum_probs=290.4
Q ss_pred HHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC-----
Q 005454 13 TLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL----- 87 (696)
Q Consensus 13 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----- 87 (696)
-..+-|..|| |..+|+...+ -+++.+.+..+.+....++ ..-.+.+...+...+....+...+-.+.+
T Consensus 503 Y~kKvGyTPd---ymflLq~l~r---~sPD~~~qFa~~l~Q~~~~-~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd 575 (1666)
T KOG0985|consen 503 YAKKVGYTPD---YMFLLQQLKR---SSPDQALQFAMMLVQDEEP-LADIEQIVDLFMELNLIQQCTSFLLDALKLNSPD 575 (1666)
T ss_pred HHHHcCCCcc---HHHHHHHHHc---cChhHHHHHHHHhhccCCC-cccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChh
Confidence 3456688888 5556666652 3466666666666654432 22234444444433333333322222111
Q ss_pred ----------------C------------CcchHHHHHHHHHccCChhHHHHHHhcCCCC-CcchHHHH-----HHHHHh
Q 005454 88 ----------------R------------DIISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTA-----IAGFAN 133 (696)
Q Consensus 88 ----------------~------------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l-----i~~~~~ 133 (696)
| ...-|..+.+.|.+.|-...|++.|..+..- -++..+.+ +-.|.-
T Consensus 576 ~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg 655 (1666)
T KOG0985|consen 576 EGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFG 655 (1666)
T ss_pred hhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHH
Confidence 1 1223667888999999999999988877531 11112222 234555
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHc-----------CCCCchhHHHHHHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVG-----------NLGGNVFVRNALTDMYA 202 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~ 202 (696)
.-.++.+++.++.|...+++.|..+...+..-|...-..+...++|+..... ++.-|+.+.-..|.+.+
T Consensus 656 ~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~ 735 (1666)
T KOG0985|consen 656 SLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAAC 735 (1666)
T ss_pred hcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHH
Confidence 5678889999999998888877766655555554444444444444443321 34567777778899999
Q ss_pred cCCCHHHHHHHHHhcCC-------------------------------CChhHH------HHHHHHHHh-----------
Q 005454 203 KGGEIDKARWLFDRMNN-------------------------------RNLVSW------NLMISGYLK----------- 234 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~-------------------------------~~~~~~------~~li~~~~~----------- 234 (696)
+.|++.+.+++-++-.- +|.+.| .-.|..|.+
T Consensus 736 kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~Vv 815 (1666)
T KOG0985|consen 736 KTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVV 815 (1666)
T ss_pred hhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhh
Confidence 99999888877655430 011110 012222222
Q ss_pred -----------------------------------CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---------
Q 005454 235 -----------------------------------NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT--------- 270 (696)
Q Consensus 235 -----------------------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--------- 270 (696)
.++..--+..++.....|. .|..|++++...|..+
T Consensus 816 G~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLk 894 (1666)
T KOG0985|consen 816 GALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLK 894 (1666)
T ss_pred hhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcc
Confidence 2222223333444455553 3667777776662211
Q ss_pred -------------------------------------------------------CCHHHHHHHH-----------Hhcc
Q 005454 271 -------------------------------------------------------GRIDDAGRLF-----------HVIK 284 (696)
Q Consensus 271 -------------------------------------------------------g~~~~A~~~~-----------~~~~ 284 (696)
.+.+--.+++ ++..
T Consensus 895 eN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv 974 (1666)
T KOG0985|consen 895 ENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVV 974 (1666)
T ss_pred cCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHH
Confidence 1111111111 1100
Q ss_pred ------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccc----hHHHHHHHHhhcCchhHHHHHHHHHHh--
Q 005454 285 ------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS----ISSVVSSCAKLASLYHGQVVHGKAVVL-- 352 (696)
Q Consensus 285 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~-- 352 (696)
..|+..-+..+.++...+-+.+-+++++++.-. |+.+. +..++-.-+-..+.....+...++-..
T Consensus 975 ~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa 1051 (1666)
T KOG0985|consen 975 QTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA 1051 (1666)
T ss_pred HhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc
Confidence 113444455566677777777777777776532 22211 111111111111111111111111110
Q ss_pred ---------------------CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHH
Q 005454 353 ---------------------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALAL 411 (696)
Q Consensus 353 ---------------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 411 (696)
.+..+....+.|++ ..+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-
T Consensus 1052 ~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1052 PDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHH
Confidence 11112222222221 23344444444444333 45799999999999999999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC
Q 005454 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN 491 (696)
Q Consensus 412 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~ 491 (696)
|-+. -|...|..++..+.+.|.+++-.+++....++ .-+|.++ +.|+-+|++.+++.+-++++. -||
T Consensus 1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN 1193 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPN 1193 (1666)
T ss_pred HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCC
Confidence 7542 35678999999999999999999999877664 6666655 478999999999999777663 477
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..-...+..-|...|.++.|.-++. +.+.|..|+..+...|.+..|...-++..
T Consensus 1194 ~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1194 VANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred chhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7778888899999999998887776 34567888888888888888776554443
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1e-08 Score=96.07 Aligned_cols=268 Identities=13% Similarity=0.109 Sum_probs=155.9
Q ss_pred hCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc---hhHHHHHHHHHHcCCCHH
Q 005454 133 NKGFSREALQVFSRMQKDRFEPT-DYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN---VFVRNALTDMYAKGGEID 208 (696)
Q Consensus 133 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~ 208 (696)
-++++++|.++|-+|.+. .|. ..+-.+|-+.+.+.|..+.|..+|+.+.++.--+. ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 346888999999999874 232 23445666778888889999999888876531111 223445677788888888
Q ss_pred HHHHHHHhcCCCC---hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC
Q 005454 209 KARWLFDRMNNRN---LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE 285 (696)
Q Consensus 209 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 285 (696)
.|+.+|..+.+.+ ..+...|+..|-+..++++|++.-+++...+-++..+-..
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA------------------------ 180 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA------------------------ 180 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH------------------------
Confidence 8888888887633 2356678888888888888888888777765443322111
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 286 KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 286 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
..|--+...+....+.+.|..++.+..+.+ |+.+-- ..+.+.....|+++.|.+.++.+.+.+..--..+...|
T Consensus 181 ---qfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 181 ---QFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ---HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 123335555556667777777777776542 322222 22333445556666666666666555544444455555
Q ss_pred HhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
..+|.+.|+.++....+.++.+ +++..-+.+...-....-.+.|...+.+-+. -+|+...|..++..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 5555555555555555544431 2333333333333333333344443333333 25555555555554
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=5.9e-09 Score=100.75 Aligned_cols=277 Identities=16% Similarity=0.092 Sum_probs=150.7
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCChhHHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK----DNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
.|++.+|+++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..++ +....-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888877665333 223334444455677777777777766543 334455666677777777777777
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH-------HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL-------VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
+.++.+.+.. +.........+|...|++.....+...+.+.+.-.+.. +++.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777764322 33445566667777777777777777777766544432 233333333333333333334444
Q ss_pred CC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh
Q 005454 384 MP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL 460 (696)
Q Consensus 384 ~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 460 (696)
.+ +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+-. .+-.+.+.++...-++..+...+
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~-------- 322 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLK-------- 322 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHH--------
Confidence 44 1233344444444555555555555555555544444411 11123333433333333333333
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..+..| ..+.+|...|.+++.+.+|...++.+++..| +...|..++.++.+.|
T Consensus 323 ------------------------~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g 375 (400)
T COG3071 323 ------------------------QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLG 375 (400)
T ss_pred ------------------------hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcC
Confidence 333333 4555555556666666666666665555555 3455566666666666
Q ss_pred ChhHHHHHHHHh
Q 005454 541 RWEDVASIRSSM 552 (696)
Q Consensus 541 ~~~~A~~~~~~m 552 (696)
+..+|..++++.
T Consensus 376 ~~~~A~~~r~e~ 387 (400)
T COG3071 376 EPEEAEQVRREA 387 (400)
T ss_pred ChHHHHHHHHHH
Confidence 666666655544
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=9.3e-09 Score=96.34 Aligned_cols=244 Identities=14% Similarity=0.131 Sum_probs=131.0
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc----hHHHHHHHhhHHhcC
Q 005454 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD----LLVSSALIDMYCKCG 372 (696)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~y~~~g 372 (696)
-|...|-+|.|..+|..+.+.|. .-......++..|-...+++.|..+-..+.+.+..+. ...|.-|...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 34444444444444444443211 1112233344444444444444444444444333221 123334444555556
Q ss_pred ChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 373 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
+.+.|..++.+..+ ..+..--.+...+...|++++|++.++...+.+..--..+...|..+|.+.|+.+++...+.+
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 66777777766552 233344445666777788888888888877754333345666677777788888888877777
Q ss_pred hHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 450 ISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI-KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+.+. .+....-..+.+......-.+.|..++ +.+..+|+...+..|+..-...
T Consensus 275 ~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d----------------------- 328 (389)
T COG2956 275 AMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD----------------------- 328 (389)
T ss_pred HHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc-----------------------
Confidence 7653 234444444444444444444444443 3455566666555555432111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEE
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKF 575 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f 575 (696)
+.-|++.+...+++.|....++..|.+..-..+-..|.|
T Consensus 329 --------aeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l 367 (389)
T COG2956 329 --------AEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTL 367 (389)
T ss_pred --------ccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceee
Confidence 123456777777888887777777766655555555554
No 60
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.23 E-value=5.9e-07 Score=91.87 Aligned_cols=490 Identities=12% Similarity=0.129 Sum_probs=262.2
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC-----CCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL-----RDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANK 134 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 134 (696)
..+-..+....+.|++...+..|++... .....|...+......|-++-+.+++++..+-+...-+.-|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555555666677777777777776543 24456777777777777777777777777665555666777777777
Q ss_pred CChhHHHHHHHHhHHCC------CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC--Cc--hhHHHHHHHHHHcC
Q 005454 135 GFSREALQVFSRMQKDR------FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG--GN--VFVRNALTDMYAKG 204 (696)
Q Consensus 135 g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~--~~~~~~li~~~~~~ 204 (696)
+++++|.+.+....... .+.+...|..+-...++..+.-....+ +.+++.|+. +| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 77777777776654321 233334455444444444332222211 222223322 22 35677888888888
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHhC----------------CC------chHHHHHHHHHHHcCC-------
Q 005454 205 GEIDKARWLFDRMNN--RNLVSWNLMISGYLKN----------------GQ------PKKCIDLFQEMQLLGL------- 253 (696)
Q Consensus 205 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~----------------g~------~~~A~~l~~~m~~~g~------- 253 (696)
|.++.|..+|++..+ -.+.-|..+-.+|++- |+ ++-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 888888888876554 1222233333333321 11 1111222222222110
Q ss_pred ----CCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---C------ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 005454 254 ----NPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---K------DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR 320 (696)
Q Consensus 254 ----~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 320 (696)
+-+..+|..-. -...|+..+-...+.+... | -...|..+...|-.+|+.+.|..+|.+..+-..+
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 00011111111 1112333333333333221 1 1124667777777777777777777776543211
Q ss_pred CC---ccchHHHHHHHHhhcCchhHHHHHHHHHHhC-----------CCC------chHHHHHHHhhHHhcCChHHHHHH
Q 005454 321 PD---KFSISSVVSSCAKLASLYHGQVVHGKAVVLG-----------VDD------DLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 321 p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
-- ..+|......=.+..+++.|..+.+.+...- .++ +..+|+..++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 10 0111111222223445555655555543211 011 123444455555566667777777
Q ss_pred HhcCCCCCchHHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH---hcCCcHHHHHHHHHHhHHh
Q 005454 381 FNMMPTRNVVSWNSM---INGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSAC---LHADLFERGQNHFDSISAV 453 (696)
Q Consensus 381 ~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~ 453 (696)
|+++.+--+.|-..+ ..-+-.+.-++++.+.|++-+..--.|+. ..|+..+.-+ .....++.|..+|++..+
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 776654322222111 12233456677777777776664334554 3444444332 234568999999999987
Q ss_pred hCCCCChH--HHHHHHHHHhccCCHHHHHHHHHhCCCC--CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 454 HGITPSLD--HYACMINLLGRSSDVDKAVDLIKSLPHK--PN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 454 ~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
+.+|.-. .|-.....=-+-|....|++++++.... +. ...|+..+.--...=-+.....+++++++.-|++-.
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~ 657 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKA 657 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHH
Confidence 7776532 2322233334568888899999886543 22 236777765444333344567788999988776543
Q ss_pred h--HHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 528 P--YIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 528 ~--~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
- -...+++-.+.|..+.|..++.--.+
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3 44567888899999999999865543
No 61
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=1.9e-11 Score=85.07 Aligned_cols=50 Identities=36% Similarity=0.590 Sum_probs=47.3
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 119 RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 119 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999864
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-07 Score=91.43 Aligned_cols=293 Identities=10% Similarity=0.028 Sum_probs=208.8
Q ss_pred HHHhCCCchHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHH---HHHHHHhcCChhH
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTT---MIVGYTQNGKEED 306 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~ 306 (696)
+.+-.++...|...+-.+.... ++-|......+...+...|+.++|...|++..--|+.+... ..-.+.+.|+.+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 3344566666666665555443 44556667788888888899999999998877554443332 2344567888888
Q ss_pred HHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-
Q 005454 307 ALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP- 385 (696)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 385 (696)
...+...+... .+-+...|..-+...-...+++.|..+-++.++.... +...+-.-...+...|+.++|.-.|+...
T Consensus 285 ~~~L~~~Lf~~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAK-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhh-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 88888777643 1222333333334444567777887777777765543 34444444566778899999999998765
Q ss_pred --CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-cCCcHHHHHHHHHHhHHhhCCCCC-h
Q 005454 386 --TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-SACL-HADLFERGQNHFDSISAVHGITPS-L 460 (696)
Q Consensus 386 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~ 460 (696)
+-+..+|..|+.+|...|.+.+|.-+-+..... ++.+..+...+. ..|. ....-++|..++++.. .+.|+ .
T Consensus 363 Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~ 438 (564)
T KOG1174|consen 363 LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYT 438 (564)
T ss_pred cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccH
Confidence 347789999999999999999999887776553 344455555552 3333 2334578888888765 45676 4
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
...+.+..++.+.|+.++++.++++ +...||....+.|...++..+.+++|...|..++.++|++..+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 5677788999999999999999987 45579999999999999999999999999999999999875543
No 63
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.6e-11 Score=83.70 Aligned_cols=50 Identities=32% Similarity=0.666 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.21 E-value=3e-09 Score=110.27 Aligned_cols=230 Identities=14% Similarity=0.160 Sum_probs=168.5
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHh-----CC-CCch-HHHHHHHhhHHhcCChHHHHHHHhcCCC----------
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVL-----GV-DDDL-LVSSALIDMYCKCGVTDDAWTVFNMMPT---------- 386 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~---------- 386 (696)
.|...+...|...|+++.|...++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555667777777777777777776654 21 1222 2233467788899999999988887652
Q ss_pred C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhC--C
Q 005454 387 R-NVVSWNSMINGYAQNGQDLEALALYDKLLQE-----N-LKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHG--I 456 (696)
Q Consensus 387 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 456 (696)
| -..+++.|...|.+.|++++|...+++..+- | ..|... -++.+...|...+.+++|..++....+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1236788888899999999988888776541 2 223332 455666778899999999999998766543 2
Q ss_pred CCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC---------CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 005454 457 TPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH---------KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL- 521 (696)
Q Consensus 457 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 521 (696)
.++ ..+++.|..+|...|++++|+++++++.. .+. ...++.|...|...+++++|.++|.+...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 233 36799999999999999999999987521 122 346788899999999999999999877553
Q ss_pred ---CCCCC---chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 522 ---EPINA---GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 522 ---~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|+.+ .+|..|+.+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35544 468899999999999999999988775
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=1.6e-07 Score=98.23 Aligned_cols=431 Identities=13% Similarity=0.085 Sum_probs=233.6
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-HHHHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT-HVSAL 163 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll 163 (696)
.|...|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|.-..|+.++++-....-.|+..+ +-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3777888888899999999999999998753 3456799999999999999999999988765432354443 33333
Q ss_pred HHHH-ccCChHHHHHHHHHHHHcC--C--CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCc
Q 005454 164 NACA-QLLDLRRGKQIHGKIVVGN--L--GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQP 238 (696)
Q Consensus 164 ~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 238 (696)
..|. +.+..+++..+-..++... . ......+..+.-+|...-. +.+..+ .+....
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR~~~h 460 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ERDALH 460 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HHHHHH
Confidence 3443 4566777776666665521 1 1112222222222221100 000000 000112
Q ss_pred hHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 239 KKCIDLFQEMQLLG-LNPDEVTVSNILGACFQTGRIDDAGRLFHVIK----EKDNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 239 ~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
.++++.+++..+.+ -.|+..-|.+ --|+-.++++.|.+...+.. ..+...|..+.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444555544432 1222222221 22445555555555544433 23455566666666666666666666665
Q ss_pred hccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCC
Q 005454 314 MLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRN 388 (696)
Q Consensus 314 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~ 388 (696)
.... ..-|......-+..-...++.+++......+...--. ..-. ...|+-....+.+..+. ..+
T Consensus 539 al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~--~~~~-------q~~~~~g~~~~lk~~l~la~~q~~~ 608 (799)
T KOG4162|consen 539 ALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEA--EYGV-------QQTLDEGKLLRLKAGLHLALSQPTD 608 (799)
T ss_pred HHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHh--hhhH-------hhhhhhhhhhhhhcccccCcccccc
Confidence 5442 1111111111111112234444444433333321100 0000 00001112222222221 011
Q ss_pred ch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC
Q 005454 389 VV-SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS--------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459 (696)
Q Consensus 389 ~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 459 (696)
.. ++..+ .+... -+.+.+..-.. |...-+.|.. ..|......+...+..++|...+.+..+ -..-.
T Consensus 609 a~s~sr~l-s~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~ 683 (799)
T KOG4162|consen 609 AISTSRYL-SSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLS 683 (799)
T ss_pred cchhhHHH-HHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhh
Confidence 11 11111 11111 11110000000 1111122221 1233444566777888888877776654 22334
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCCchHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-LIWSTLLSVCAMKGDIKHGEM--AARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
...|......+...|.+++|.+.|.. ....|+. .+..++...+...|+...|+. ++..+++++|.++.+|..|+.+
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 56677777888899999999988865 4456754 488899999999999888888 9999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
+.+.|+.++|...|....+-
T Consensus 764 ~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 764 FKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHccchHHHHHHHHHHHhh
Confidence 99999999999999877653
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.8e-07 Score=88.63 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=88.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-HHHHHHh
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA-CMINLLG 471 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~li~~~~ 471 (696)
.+|.+.+.-..++++.+-.+.....- +.-|.+--..+.+|.+..|.+.+|.++|-++... .+ .+..+|. .|...|.
T Consensus 363 QsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 363 QSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYI 439 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHH
Confidence 34555555556666666666665553 2233333335677888888899999888776531 22 3344454 4567888
Q ss_pred ccCCHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 472 RSSDVDKAVDLIKSLPHKPNSLIW-STLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+.|+.+.|++++-++..+.+..+. ..+..-|.+.+.+--|-++|+.+-.++|. |+.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEn 496 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PEN 496 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-ccc
Confidence 999999999998888765555544 44456788889888888999888888873 443
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1.1e-08 Score=111.62 Aligned_cols=244 Identities=14% Similarity=0.038 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHhccCCCCCCcc-chHHHHHHHH---------hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 303 KEEDALILFNEMLSEDVRPDKF-SISSVVSSCA---------KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
..++|+++|++..+ ..|+.. .+..+..++. ..++.+.|...++.+++..+. +...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 45788888888875 345443 3333333322 223467888999998887654 6778888888999999
Q ss_pred ChHHHHHHHhcCCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT--R-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 373 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++++|...|++... | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998663 3 456788899999999999999999999998 456543 33344445666899999999999
Q ss_pred HhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 449 SISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 449 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
++.+. ..|+ ...+..+...|...|++++|...++++.. .|+.. .++.+...+...| +.|...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88753 2343 45677788899999999999999988543 45544 4555555666666 47888888877755333
Q ss_pred CchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 526 AGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 526 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+.....+..+|.-.|+-+.+..+ +++.+.+
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33344477788888998888877 7776654
No 68
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.6e-06 Score=88.19 Aligned_cols=433 Identities=12% Similarity=0.119 Sum_probs=249.1
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH--Hcc
Q 005454 95 ALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQL 169 (696)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~ 169 (696)
+=++.+.+.|++++|.+..+++.. .+...+..-+-+..+.+.+++|+.+.+.=.. ...+.+-+ +=.+| .+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~--fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFF--FEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhh--HHHHHHHHHc
Confidence 346677778888888887777653 2455566666677888888888855443221 01111111 12333 467
Q ss_pred CChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHh-CCCchHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLK-NGQPKKCIDLFQE 247 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~ 247 (696)
+..++|...+. |..++ ..+...-...+.+.|++++|..+|+.+...+...+..-+.+-+- .+-...+ ..
T Consensus 93 nk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~----~~ 163 (652)
T KOG2376|consen 93 NKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV----QL 163 (652)
T ss_pred ccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH----HH
Confidence 77777777666 33333 33555556667788888888888888766554444433332111 1100111 12
Q ss_pred HHHcCCCCCcchHHHHHH---HHHhcCCHHHHHHHHHhcc--------CCCh-----h-----HHHHHHHHHHhcCChhH
Q 005454 248 MQLLGLNPDEVTVSNILG---ACFQTGRIDDAGRLFHVIK--------EKDN-----V-----CWTTMIVGYTQNGKEED 306 (696)
Q Consensus 248 m~~~g~~p~~~t~~~ll~---~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g~~~~ 306 (696)
|......| ..+|..+.+ .+...|++.+|+++++... +.|. . .---|...+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 33333334 345554444 3667899999999988772 2111 1 11224456777899999
Q ss_pred HHHHHHHhccCCCCCCccchHHHHH---HHHhhcCchh--HHHHHHHHH-----------HhCCCCchHHHHHHHhhHHh
Q 005454 307 ALILFNEMLSEDVRPDKFSISSVVS---SCAKLASLYH--GQVVHGKAV-----------VLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 307 A~~~~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~li~~y~~ 370 (696)
|..++...++.. .+|........+ +...-.++.. +...++... ..........-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988763 444432222211 1111111111 111111110 0000111222344555554
Q ss_pred cCChHHHHHHHhcCCCCC-chHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPTRN-VVSWNSMINGYA--QNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~ 445 (696)
+..+.+.+.-...+... ...+.+++.... +.....+|.+++...-+. .|.. +.....++.....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45567777777776432 233444443322 233577888888887764 4444 445555666778999999999
Q ss_pred HHH--------HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh--------CCCCCC-HHHHHHHHHHHHhcCCh
Q 005454 446 HFD--------SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS--------LPHKPN-SLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 446 ~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--------~~~~p~-~~~~~~ll~~~~~~g~~ 508 (696)
++. .+.+ +.-.+.+...++.++.+.+.-+.|..++.+ +..++. ..+|.-+..--.++|+.
T Consensus 398 il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 4432 223345667788888888876666555543 222322 22444444445678999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
++|...++++++.+|++......+.-+|++.. .+.|..+=+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 99999999999999999999999999998764 556665543
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2e-07 Score=92.29 Aligned_cols=409 Identities=12% Similarity=0.053 Sum_probs=252.4
Q ss_pred HHHHHHHHccCChhHHHHHHhcCC--CCC-cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHcc
Q 005454 94 NALLSAHARSGSVQDLRALFDKMP--IRD-SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQL 169 (696)
Q Consensus 94 ~~li~~~~~~g~~~~A~~~f~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~ 169 (696)
-...+-|.+.|.+++|++.+.+.. .|| .+-|.....+|...|++++..+.-.+..+. .|+-+ .+..-.++.-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhh
Confidence 345677888999999999999886 467 778899999999999999999888877754 56533 344444566677
Q ss_pred CChHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHH
Q 005454 170 LDLRRGKQIHGKIVV-GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEM 248 (696)
Q Consensus 170 ~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 248 (696)
|++.++..=.....- .|+. +..+ ..+++--.+.--...+.+-|.+-..|...+ ++.|..|...-..+- ...+
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS-~~fi~syf~sF~~~~----~~~~ 269 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKLKENRPPVLPS-ATFIASYFGSFHADP----KPLF 269 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhhcccCCCCCCc-HHHHHHHHhhccccc----cccc
Confidence 777776532222111 1111 1111 111111111111223333333211122211 222222322110000 0000
Q ss_pred HHcCCCCCcchHHHHHHHH----Hh-cCCHHHHHHHHHhc-------cCC---Chh------HHHHHHHHHHhcCChhHH
Q 005454 249 QLLGLNPDEVTVSNILGAC----FQ-TGRIDDAGRLFHVI-------KEK---DNV------CWTTMIVGYTQNGKEEDA 307 (696)
Q Consensus 249 ~~~g~~p~~~t~~~ll~~~----~~-~g~~~~A~~~~~~~-------~~~---~~~------~~~~li~~~~~~g~~~~A 307 (696)
..+.......+..++ .. ...+..|...+.+- ... |.. +...-..-+.-.|+.-.|
T Consensus 270 ----~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 270 ----DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred ----cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000001111111110 00 01122222222111 111 111 111111224457889999
Q ss_pred HHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-
Q 005454 308 LILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT- 386 (696)
Q Consensus 308 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 386 (696)
...|+..+.....++. .|..+...|....+.++..+.|..+.+.+.. ++.+|..-..++.-.+++++|..-|++...
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999875433332 2777778899999999999999999998875 677787888888999999999999998774
Q ss_pred --CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----
Q 005454 387 --RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----- 459 (696)
Q Consensus 387 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 459 (696)
.++..|-.+..+.-+.++++++...|++.++. ++--+..|+.....+...++++.|.+.|+..+. +.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 35566777777777889999999999999885 344467888888999999999999999998874 3444
Q ss_pred --hHH--HHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 460 --LDH--YACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 460 --~~~--~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
... .-.++ .+.-.+++.+|.+++++.. ..| ....+.+|...-.+.|+.++|.++|++...+-
T Consensus 500 v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 111 11121 1223489999999998754 455 35589999999999999999999999987754
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=3.1e-09 Score=99.33 Aligned_cols=228 Identities=17% Similarity=0.155 Sum_probs=145.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc
Q 005454 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC 371 (696)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 371 (696)
+-|..+|.+.|.+.+|.+.|+.-+.. .|-+.||..+-.+|.+...++.|..++...++.-+ .|+.........+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhHHHHHHH
Confidence 34556667777777777777666553 34444555566666666666666666655554322 2333333444445555
Q ss_pred CChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 372 GVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 372 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++.++|.++|+...+ .|+.+...+..+|.-.++++-|+..|+++++.| .-+...|..+.-+|...++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 555555555554432 234444444555555666666666666666655 2344555555555555555555555555
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+.... +. +|+ ..+|-.|.......||+..|.+.|+-++..+|++.
T Consensus 383 RAlst--------------------------------at-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------AT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------cc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 54431 11 232 34788888888889999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++.|+-+-.+.|+.++|..++...++..
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999999999999999999999999887644
No 71
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.07 E-value=1.2e-06 Score=92.48 Aligned_cols=255 Identities=14% Similarity=0.144 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
++.-+...|-..|++++|++.+++.++. .|+ +..|..-.+.+-..|++.+|....+.+...... |..+-+-.+..+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHH
Confidence 3455677788899999999999988875 455 446667777888899999999999998887764 777778888888
Q ss_pred HhcCChHHHHHHHhcCCCCCch----------HH--HHHHHHHHHcCChHHHHHHHHHHHHC--CC-------------C
Q 005454 369 CKCGVTDDAWTVFNMMPTRNVV----------SW--NSMINGYAQNGQDLEALALYDKLLQE--NL-------------K 421 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~-------------~ 421 (696)
.++|+.++|.+++....+++.. .| .....+|.+.|++..|++.|....+. .+ +
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK 352 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRK 352 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhh
Confidence 9999999999988877754421 33 33467888999999988877665542 11 1
Q ss_pred CCHHHHHHHHHHHhcCC-------cHHHHHHHHHHhHHhhCCCCCh-----------HHHHHHHHHH---hccCCHHHHH
Q 005454 422 PDSFTFVSVLSACLHAD-------LFERGQNHFDSISAVHGITPSL-----------DHYACMINLL---GRSSDVDKAV 480 (696)
Q Consensus 422 p~~~t~~~ll~a~~~~g-------~~~~a~~~~~~m~~~~~~~p~~-----------~~~~~li~~~---~~~g~~~~A~ 480 (696)
.+..+|..++.-.-+.. -...|.+++-.+.......... .--..+-.-- .+...-+++.
T Consensus 353 ~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~ 432 (517)
T PF12569_consen 353 MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAE 432 (517)
T ss_pred ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22233444443322111 1223344444333210000000 0000000000 0001111111
Q ss_pred HHHHh-----------C----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 481 DLIKS-----------L----PH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 481 ~~~~~-----------~----~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
..-.+ . +. .||+.- ..|+ ....=+++|.+.++-+.+..|++..+|..--.+|.+.|++-
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~G-ekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~L 508 (517)
T PF12569_consen 433 KAAKKEPKKQQNKSKKKEKVEPKKKDDDPLG-EKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYL 508 (517)
T ss_pred HHHhhhhhhhhccccccccccCCcCCCCccH-HHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHH
Confidence 10000 0 01 122211 1121 22334688999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 005454 544 DVASIRSS 551 (696)
Q Consensus 544 ~A~~~~~~ 551 (696)
-|++.+++
T Consensus 509 LaLqaL~k 516 (517)
T PF12569_consen 509 LALQALKK 516 (517)
T ss_pred HHHHHHHh
Confidence 88887653
No 72
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=5e-06 Score=84.69 Aligned_cols=435 Identities=12% Similarity=0.048 Sum_probs=260.6
Q ss_pred CchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHHHHH--HccCChhHHHHHHh
Q 005454 37 NDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALLSAH--ARSGSVQDLRALFD 114 (696)
Q Consensus 37 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~f~ 114 (696)
..++++++.+....++..+|.+..++..-+-+..+.+.+++|..+.+.-....+...-.+=.+| .+.+..++|...++
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 6788999999999999998666677788888899999999999776655432221111134444 57899999999999
Q ss_pred cCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH
Q 005454 115 KMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV 193 (696)
Q Consensus 115 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 193 (696)
...+-+..+-..-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-.. ... ..+......| ..+
T Consensus 104 ~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~-~~~q~v~~v~-e~s 174 (652)
T KOG2376|consen 104 GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQV-QLLQSVPEVP-EDS 174 (652)
T ss_pred cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhH-HHHHhccCCC-cch
Confidence 6655565566666778899999999999999998765332111 11111111110 011 1122222222 222
Q ss_pred HHH---HHHHHHcCCCHHHHHHHHHhcC--------CCCh-----h-----HHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 194 RNA---LTDMYAKGGEIDKARWLFDRMN--------NRNL-----V-----SWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 194 ~~~---li~~~~~~g~~~~A~~~~~~~~--------~~~~-----~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
|.. ....+...|++.+|+++++... +.|. . .--.|.-.+-..|+.++|..++...+...
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 222 3445678999999999998872 2111 1 12234456777899999999999998875
Q ss_pred CCCCcchHHHHHH---HHHhcCCHH--HHHHHHHhccCC--------------ChhH-HHHHHHHHHhcCChhHHHHHHH
Q 005454 253 LNPDEVTVSNILG---ACFQTGRID--DAGRLFHVIKEK--------------DNVC-WTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 253 ~~p~~~t~~~ll~---~~~~~g~~~--~A~~~~~~~~~~--------------~~~~-~~~li~~~~~~g~~~~A~~~~~ 312 (696)
.+|........+ +......+- .++..++..... ..+. -+.++..| .+.-+.+.++-.
T Consensus 255 -~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a 331 (652)
T KOG2376|consen 255 -PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSA 331 (652)
T ss_pred -CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHH
Confidence 445433222221 122211111 223333332211 1111 12223322 233444555444
Q ss_pred HhccCCCCCCccchHHHHHHHHhh--cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh--------
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKL--ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN-------- 382 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~-------- 382 (696)
... +..|. ..+.+++..+... .....+..++....+........+.-.++......|+++.|.+++.
T Consensus 332 ~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 332 SLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred hCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 433 22333 3344455444332 2355666666666655544445666677788888999999999888
Q ss_pred cCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHhcCCcHHHHHHHHHHhHHhh
Q 005454 383 MMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVL----SACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 383 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll----~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
.+.+ ..+.+-.++...|.+.++.+.|..++.+.+.- .-.+.......++ .--.+.|..++|...++.+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k-- 486 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK-- 486 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--
Confidence 4432 23334455666677777777777777766541 1122223333333 333456999999999999987
Q ss_pred CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC
Q 005454 455 GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK 489 (696)
Q Consensus 455 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 489 (696)
-.++|..+..++|.+|.+. +.+.|..+-+.++..
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 4568889999999999865 578888888777543
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=1.8e-08 Score=109.82 Aligned_cols=210 Identities=12% Similarity=0.024 Sum_probs=163.2
Q ss_pred cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH---------hcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCC
Q 005454 337 ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC---------KCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQ 404 (696)
Q Consensus 337 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 404 (696)
++++.|...++++++..+. +...+..+..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467889999999887654 4556666665554 23457899999987763 466788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHH
Q 005454 405 DLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 482 (696)
+++|+..|++.++. .|+ ...+..+..++...|++++|...++++.+. .|+. ..+..+...+...|++++|...
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999994 565 567777888899999999999999999853 4543 2333345556778999999999
Q ss_pred HHhCCC--CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 483 IKSLPH--KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 483 ~~~~~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++... .|+ ...+..+..++...|+.++|...++++....|.+......++..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 987532 354 4456777788889999999999999998888888888888888888888 588887877755
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=1.8e-08 Score=100.41 Aligned_cols=190 Identities=18% Similarity=0.169 Sum_probs=116.7
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSA 433 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 433 (696)
...+..+...|.+.|+.+.|...|+... ..+...|+.+...+...|++++|++.|++.++ +.|+ ..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3445666667777777777777777554 23556777777777888888888888887776 4555 4566666667
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|.+.|+...+. .|+..........+...++.++|.+.+++... .|+...| . ......|+...+
T Consensus 142 l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~-~--~~~~~lg~~~~~ 215 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW-N--IVEFYLGKISEE 215 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH-H--HHHHHccCCCHH
Confidence 77778888888877777653 34322112222233456677888777754322 2222222 1 222234444333
Q ss_pred HHHHHHHH-------hcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 512 EMAARHLF-------ELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 512 ~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..++.+. ++.|..+.+|..++.+|...|++++|...|++..+.+
T Consensus 216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333333 4445566778888888888888888888888776644
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.03 E-value=4.9e-08 Score=94.22 Aligned_cols=196 Identities=16% Similarity=0.168 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..+..+...+...|++++|.+.+++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 44556666666667777777766666543 122 233334444455
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
...|++++|.+.|+... +.+...+..+...+...|++++|.+.|++.......| ....+..+...+...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555554433 2233455555666666666666666666666532222 2234455555666677777777
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..+....+. .+.+...+..+...+...|++++|.+.+++... +++...+..+...+...|+.+.|....+.+.+..
T Consensus 156 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 156 KYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 777766542 222345566666777777777777776665321 2344455566666677777777777776665543
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=4.6e-06 Score=85.86 Aligned_cols=453 Identities=12% Similarity=0.026 Sum_probs=276.3
Q ss_pred hHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHH
Q 005454 23 EEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSA 99 (696)
Q Consensus 23 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 99 (696)
...|..+++++- .+....++.....+++..+....+.....-.+...|+.++|.......... +.+.|..+.-.
T Consensus 8 ~~lF~~~lk~yE---~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYE---TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHH---HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 345667777774 566777888877788755554455554445556778999999888877664 56788888888
Q ss_pred HHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHH
Q 005454 100 HARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGK 176 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 176 (696)
+-...++++|++.|.... ..|...|.-+.-.-++.++++...+.-.+..+.. +.....|.....+.--.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998765 3466778777777778888888888777776641 234456777778888889999999
Q ss_pred HHHHHHHHcCC-CCchhHHHHH------HHHHHcCCCHHHHHHHHHhcCC--CChh-HHHHHHHHHHhCCCchHHHHHHH
Q 005454 177 QIHGKIVVGNL-GGNVFVRNAL------TDMYAKGGEIDKARWLFDRMNN--RNLV-SWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 177 ~~~~~~~~~g~-~~~~~~~~~l------i~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
.+.+...+... .|+...+.-. .....+.|.++.|.+.+..... -|-. .-.+-...+.+.+++++|..++.
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~ 243 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYR 243 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence 99998887652 4555444332 2345678889999988877654 1222 33455677889999999999999
Q ss_pred HHHHcCCCCCcchHHHHHH-HHHhcCCHHHHH-HHHHhccCC---ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 005454 247 EMQLLGLNPDEVTVSNILG-ACFQTGRIDDAG-RLFHVIKEK---DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~A~-~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (696)
.+... .||...|...+. ++.+..+.-++. .+|....+. ....-..=+.......-.+..-+.+..+.+.|+++
T Consensus 244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~ 321 (700)
T KOG1156|consen 244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS 321 (700)
T ss_pred HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence 99886 477776655554 444444444444 666655421 11000000111111122233445566677777765
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHH----hC----------CCCchHHHH--HHHhhHHhcCChHHHHHHHhcCC
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVV----LG----------VDDDLLVSS--ALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~~--~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
--..+ .+-+-.....+-.+++.-.... .| -+|....|+ .++..|-+.|+++.|...++...
T Consensus 322 vf~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 322 VFKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hhhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 43333 2222221111111111111111 00 134444443 45667778888888888888776
Q ss_pred CCCch---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC--CCCh
Q 005454 386 TRNVV---SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI--TPSL 460 (696)
Q Consensus 386 ~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~ 460 (696)
...+. .|..-...+...|+.++|..++++..+.. .||...=..-..-..++++.++|.++.....+. |. ..+.
T Consensus 399 dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L 476 (700)
T KOG1156|consen 399 DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNL 476 (700)
T ss_pred ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhH
Confidence 43322 34444567777888888888888877754 344332223334445677788888877776653 43 1111
Q ss_pred HHHHHH------HHHHhccCCHHHHHHHHHhC
Q 005454 461 DHYACM------INLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 461 ~~~~~l------i~~~~~~g~~~~A~~~~~~~ 486 (696)
.-..|| ..+|.|.|++.+|++-|..+
T Consensus 477 ~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 477 AEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 111222 35677777777776555443
No 77
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.01 E-value=3.4e-08 Score=88.54 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMIN 468 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 468 (696)
+...+..+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ +.|+ -.+.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 3455777889999999999999999884 5664 6788888889999999999999988875 3444 578888888
Q ss_pred HHhccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 469 LLGRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
-++..|++++|...|++....|+ ..+|..+..+..+.|+.+.|+..+++.++++|+.+.+...++....+.|++-.
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999988766554 34888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCC
Q 005454 545 VASIRSSMKSKNV 557 (696)
Q Consensus 545 A~~~~~~m~~~~~ 557 (696)
|..+++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999999877665
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.00 E-value=1e-07 Score=99.03 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=114.3
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC----------CCCch-HHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH-
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP----------TRNVV-SWNSMINGYAQNGQDLEALALYDKLLQE---NLKPDS- 424 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~- 424 (696)
+++.|...|.+.|++++|...++... .+.+. .++.++..+...+++++|..+++...+. -+.++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445556677777666665554332 12222 3566777788888899888888876542 123333
Q ss_pred ---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhh----C-CCCC-hHHHHHHHHHHhccCCHHHHHHHHHhC--------C
Q 005454 425 ---FTFVSVLSACLHADLFERGQNHFDSISAVH----G-ITPS-LDHYACMINLLGRSSDVDKAVDLIKSL--------P 487 (696)
Q Consensus 425 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~ 487 (696)
.++..+...+.+.|++++|.++|+++.+.. + ..+. ...++.|...|.+.+++++|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 478888889999999999999999887643 1 1222 456788888999999999888888653 1
Q ss_pred CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 488 HKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 488 ~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
..|+.. +|..|...|...|+++.|+++.+++..
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 235544 899999999999999999999988864
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.4e-06 Score=80.15 Aligned_cols=313 Identities=12% Similarity=0.015 Sum_probs=199.1
Q ss_pred CCCcchHHHHHHHHHhc--CCHHHHHHHHHhcc-----CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch
Q 005454 254 NPDEVTVSNILGACFQT--GRIDDAGRLFHVIK-----EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 326 (696)
+|...+....+.+++.+ ++-..|...+-.+. ..|+.....+...+...|+.++|+..|++.+. +.|+..+-
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~ 268 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEA 268 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhh
Confidence 34444445555555543 33333333332222 34666778888888888888888888888764 44543331
Q ss_pred HHH-HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHc
Q 005454 327 SSV-VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQN 402 (696)
Q Consensus 327 ~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 402 (696)
.-+ .-.+...|+.+....+...+....-. ....|..-........+...|..+-++..+ +++..+-.-...+.+.
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhc
Confidence 111 11234556666666665555443211 122222223334455667777777666553 3444555455677788
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH-HHHh-ccCCHHHH
Q 005454 403 GQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI-NLLG-RSSDVDKA 479 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A 479 (696)
|+.++|.-.|+..+. +.| +...|..|+..|...|.+.+|.-.-....+ -+..+..+...+. +.+. ...--++|
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKA 423 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKA 423 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHH
Confidence 889999888888877 454 457888899988888888888877666654 2333444443332 2222 22334778
Q ss_pred HHHHHh-CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 480 VDLIKS-LPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 480 ~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
.+++++ +..+|+-. ..+.+...|...|..+.+..++++.+...| |...++.|++++...+.+.+|...|.....
T Consensus 424 Kkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--- 499 (564)
T KOG1174|consen 424 KKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--- 499 (564)
T ss_pred HHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh---
Confidence 888876 45577754 667777888888999999999999988887 456788899999999999999988876654
Q ss_pred cCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 005454 558 KKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600 (696)
Q Consensus 558 ~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~ 600 (696)
..|+.+...+-+..+.++|+
T Consensus 500 -----------------------~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 500 -----------------------QDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -----------------------cCccchHHHHHHHHHHhccC
Confidence 35666666677777777776
No 80
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=8e-07 Score=91.90 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=115.1
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChH
Q 005454 296 VGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTD 375 (696)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 375 (696)
.+......|.+|+.+++.++.+.. -.--|..+...|+..|+++.|.++|-.. ..++-.|+||.+.|+|.
T Consensus 740 eaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 344556666777777766665422 2233555666677777777776666542 22345566777777777
Q ss_pred HHHHHHhcCCCCC--chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 376 DAWTVFNMMPTRN--VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 376 ~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
+|.++-.+...|. +..|-+-..-+-.+|++.+|.++|-... .|+. .++.|-+.|..+..+++.++-..
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~- 878 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG- 878 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh-
Confidence 7777666655442 3345555555556666666666654331 3432 34445556666665555443211
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
..-.++...+..-|...|++.+|.+-|-+.+ -|.+-++.|...+-++.|-++.+ ..+..|..-.+...
T Consensus 879 ---d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~fl 946 (1636)
T KOG3616|consen 879 ---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFL 946 (1636)
T ss_pred ---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHH
Confidence 1112333444555666666666666554443 24445555555555555444322 22333444444444
Q ss_pred HHHhhcCChhHHHHHHH
Q 005454 534 NMYAACGRWEDVASIRS 550 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~ 550 (696)
++-+-.| +.|.+++.
T Consensus 947 waksigg--daavklln 961 (1636)
T KOG3616|consen 947 WAKSIGG--DAAVKLLN 961 (1636)
T ss_pred HHHhhCc--HHHHHHHH
Confidence 4444444 34555554
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=2.5e-07 Score=92.22 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=150.5
Q ss_pred CChhHHHHHHHHhccCC-CCCC--ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 302 GKEEDALILFNEMLSED-VRPD--KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...+..+++..+. +...++.+...|...|+++.|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 45566666666666431 1222 233555555667777888888877777776543 6788888999999999999999
Q ss_pred HHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC
Q 005454 379 TVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 379 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 455 (696)
..|+...+ .+..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99987753 3456888888899999999999999999988 456543222222234456789999999977654 3
Q ss_pred CCCChHHHHHHHHHHhccCCH--HHHHHHHHh-CCCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 456 ITPSLDHYACMINLLGRSSDV--DKAVDLIKS-LPHK----P-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~-~~~~----p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
..|+...+ .++..+ .|+. +++.+.+.+ .... | ...+|..+...+...|++++|...|+++++.+|.+..
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33443222 333333 4444 333333332 2221 2 2358999999999999999999999999999975433
Q ss_pred -hHHHHHHH
Q 005454 528 -PYIMLSNM 535 (696)
Q Consensus 528 -~~~~l~~~ 535 (696)
.-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 33334433
No 82
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=1.9e-06 Score=80.08 Aligned_cols=408 Identities=12% Similarity=0.066 Sum_probs=211.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHH-HHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRFEP-TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRN-ALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 201 (696)
+++.+..+.+..+++.|++++..-.+. .| +....+.+--.|....++..|...++++...-+ ...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHH
Confidence 556666667777777777777665554 34 444455555555666777777777777655432 222111 123334
Q ss_pred HcCCCHHHHHHHHHhcCCC-ChhHHHHHH--HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNR-NLVSWNLMI--SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGR 278 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~-~~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~ 278 (696)
.+.+.+.+|+++...|.+. +...-..-+ ......+++..+..++++....| +..+.+.......+.|+.+.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 4566677777777766652 222111111 12234566666666666544322 33444444444556677777777
Q ss_pred HHHhccCC----ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhC
Q 005454 279 LFHVIKEK----DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLG 353 (696)
Q Consensus 279 ~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 353 (696)
-|+...+- ....||..+ +..+.|+++.|++...++++.|++..+..- .....+ .....+..-..++...+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal--- 240 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL--- 240 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH---
Confidence 66665532 334455433 334556677777777777666654322110 000000 00000000011111100
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
+..+|.-...+.+.|+.+.|.+.+..|++ .|++|...+.-. -..+++.+..+-++-+.+.+ +-...||.
T Consensus 241 ----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFA 314 (459)
T KOG4340|consen 241 ----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFA 314 (459)
T ss_pred ----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHH
Confidence 12233334456788999999999999985 377777665432 22455555555566666643 23457999
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHh-ccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-Hhc
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGIT-PSLDHYACMINLLG-RSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC-AMK 505 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~-~~~ 505 (696)
.++-.|++..-++.|-.++.+-... -.. .+...|+ |++++. -.-..++|.+-++.+...-....-..-+..- .++
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~ 392 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARH 392 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888888876432110 000 1122232 344443 3445666665554432110000000001100 112
Q ss_pred CC----hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 506 GD----IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 506 g~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+ ...+.+-++..+++. ..+.+..+++|.+..++..+.++|..-.+
T Consensus 393 ~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 393 NRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 22 123344445555544 12466778889999999999999976654
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.5e-06 Score=81.15 Aligned_cols=438 Identities=11% Similarity=0.020 Sum_probs=241.5
Q ss_pred HHHHHccCChhHHHHHHhcCCCCC---c-chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh
Q 005454 97 LSAHARSGSVQDLRALFDKMPIRD---S-VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL 172 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 172 (696)
+.-+....++..|+.+++.-..-+ . .+---+...+.+.|++++|+..+.-+.+.. .|+...+..+.-..--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 344445567777777766543211 1 111123445667777777777777766543 44444444444444455666
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 005454 173 RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG 252 (696)
Q Consensus 173 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 252 (696)
.+|+++-... +.++.--..|.+.-.+.|+-++-..+-+.+.+.. .---+|.+.....-.+.+|++++......+
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666665443 2223333334455555666555554444443311 111122232222335677777777766542
Q ss_pred CCCCcchHHHHHH-HHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHH
Q 005454 253 LNPDEVTVSNILG-ACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS 328 (696)
Q Consensus 253 ~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 328 (696)
|+-...+.-+. .|.+..-++-+.+++.--. ..++..-|.......+.=+-..|.+-.+++...+-.. |-
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~- 254 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP- 254 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-
Confidence 33333333222 3455555555555444322 2234444444444333322223333333333321110 11
Q ss_pred HHHHHHhh-----cCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcC
Q 005454 329 VVSSCAKL-----ASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNG 403 (696)
Q Consensus 329 ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 403 (696)
.+.-.++. .+-+.|.+++-.+.+.- +..--.|+-.|.+.+++.+|..+.++..+..+.-|-.-.-.++..|
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhh
Confidence 11112221 23456666665555432 2233456777999999999999999988766655544444444544
Q ss_pred C-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 404 Q-------DLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 404 ~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
+ ..-|.+.|+-.-+++..-|.+ --.++.+++.-.-++++.+-++.++.. +=...|...+ .+..++...|.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcC
Confidence 4 234555555444455444432 233455555556678999999999876 3334444444 57899999999
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhcC-CCCC-chHHHHHHHHhhcCChhHHHHHHH
Q 005454 476 VDKAVDLIKSLPHK--PNSLIWSTLLSVC-AMKGDIKHGEMAARHLFELE-PINA-GPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 476 ~~~A~~~~~~~~~~--p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+.+|+++|-.+... .|..+|.+++.-| .+.|..+.|.. .+++.+ |.+. .....+++-+.+++.+--|.+.|+
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~---~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd 485 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWD---MMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFD 485 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHH---HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999877542 4667777766554 56677776654 456665 3222 335577888999999999999999
Q ss_pred HhhhCCC
Q 005454 551 SMKSKNV 557 (696)
Q Consensus 551 ~m~~~~~ 557 (696)
.+...+.
T Consensus 486 ~lE~lDP 492 (557)
T KOG3785|consen 486 ELEILDP 492 (557)
T ss_pred HHHccCC
Confidence 8876444
No 84
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=1.6e-07 Score=88.16 Aligned_cols=223 Identities=13% Similarity=0.035 Sum_probs=117.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhHHHHHHHHHHhcCC
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--K-DNVCWTTMIVGYTQNGK 303 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~ 303 (696)
.|..+|.+.|.+.+|...|+.-... .|-..||..|-++|.+..+.+.|+.+|.+-.+ | |+....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4555666666666666666555543 34445555555555555555555555554442 1 22233344555555666
Q ss_pred hhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhc
Q 005454 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
.++|+++|+...+. -..+......+...|.-.++++.|..++..++..|.. ++..|
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf---------------------- 361 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELF---------------------- 361 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHH----------------------
Confidence 67777777666653 2233444444555555566666666666666666654 33444
Q ss_pred CCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH
Q 005454 384 MPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD 461 (696)
Q Consensus 384 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 461 (696)
+.+.-+|.-.++++-++.-|++.+..--.|+. ..|..+.......|++..|.+.|.-... .-....+
T Consensus 362 ---------~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~e 430 (478)
T KOG1129|consen 362 ---------CNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGE 430 (478)
T ss_pred ---------hhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHH
Confidence 44444444445555555555555443223332 2344444444555666666666655543 2223345
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
.++.|.-+-.+.|++++|..++...
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHh
Confidence 5555555555566666665555543
No 85
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.89 E-value=3.2e-05 Score=80.46 Aligned_cols=348 Identities=16% Similarity=0.173 Sum_probs=205.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHH
Q 005454 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241 (696)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (696)
.+.+......+..|..+++.+.... .-...|..+.+-|+..|+++.|.++|-+.. .++-.|..|.++|+++.|
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444455667777777777665543 223446677888999999999999987643 466778889999999998
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 005454 242 IDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321 (696)
Q Consensus 242 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (696)
.++-.+. .|.......|..-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++..+-...-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~--- 880 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDH--- 880 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhh---
Confidence 8876554 34444555666666667788999999998888877764 3677888888888888887643211
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc-----hHHHHH-
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV-----VSWNSM- 395 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~l- 395 (696)
-..|...+..-+...|++..|..-|-.+.. +.+-++||-..+.|++|.++-+.---.|. ..|..-
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 123445566667778888888876655433 56778899999999999888765432221 223211
Q ss_pred -----HHHHHHcCChHHH-------------HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 396 -----INGYAQNGQDLEA-------------LALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 396 -----i~~~~~~g~~~~A-------------~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
+..+.++|..+++ .++-+-..+. -.|.. ...+..-+...|.+++|-+.+-...+-+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~v--hlk~a~~ledegk~edaskhyveaikln--- 1025 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLN--- 1025 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhcc---
Confidence 1223333333333 3333222221 12222 1222233456788888876665554321
Q ss_pred CChHHHHHHH-----HHHhccC-CHHHHHHHH-------------HhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHH
Q 005454 458 PSLDHYACMI-----NLLGRSS-DVDKAVDLI-------------KSLPHKPNSL--IWSTLLSVCAMKGDIKHGEMAAR 516 (696)
Q Consensus 458 p~~~~~~~li-----~~~~~~g-~~~~A~~~~-------------~~~~~~p~~~--~~~~ll~~~~~~g~~~~a~~~~~ 516 (696)
.-..+|...+ --+.|.| +.++|.++| +.-- ||.. ++..-..+....||+.+|+-.+-
T Consensus 1026 tynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fll 1103 (1636)
T KOG3616|consen 1026 TYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFLL 1103 (1636)
T ss_pred cccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhhee
Confidence 0011111110 1133444 455555444 3221 2221 33333344455677777776543
Q ss_pred HHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 517 HLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 517 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
++ ..|+ ...+-|...+.|.+|+++-+.
T Consensus 1104 ra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1104 RA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred ec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 32 1232 345667888999999987653
No 86
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=4.4e-06 Score=79.22 Aligned_cols=316 Identities=11% Similarity=0.121 Sum_probs=182.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHh
Q 005454 194 RNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMI---SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS-NILGACFQ 269 (696)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~ 269 (696)
.--|-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=+....+ .+||-..-. .-...+.+
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh
Confidence 334566677788999999999988887777776664 477888888888887877776 366643221 12223678
Q ss_pred cCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHH
Q 005454 270 TGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKA 349 (696)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 349 (696)
.|.++.|..-|+.+.+.++.- +....++.+ +.+.+++. .....+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~-~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSN-GLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCc-chhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHHH
Confidence 888888888888876543310 000011111 11111111 1222333445567777777777777
Q ss_pred HHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcC---CCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM---PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
++..+ .|...+..-..+|...|.+..|+.-++.. ...|.....-+-..+-..|+.+.++...++-++ +.||...
T Consensus 182 lEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 77543 47777888888888889888887666544 355666666677777888999999988888887 6788642
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH-----HHHHHHHH
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS-----LIWSTLLS 500 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~-----~~~~~ll~ 500 (696)
....- ..+....+.+++|.+ ..+.+++.++.+..++ |..+|.. ..+..+-.
T Consensus 259 Cf~~Y------KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 259 CFPFY------KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHH------HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 21111 111222222222222 1223333344333332 2222321 12223333
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++..+++.+|.+...++++++|+|..++.--+.+|.-...+|+|+.-++...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555555555555555555555555443
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.84 E-value=3.5e-05 Score=81.17 Aligned_cols=430 Identities=14% Similarity=0.057 Sum_probs=237.9
Q ss_pred CCcc-cHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHH
Q 005454 56 PNTT-FLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTA 127 (696)
Q Consensus 56 ~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~l 127 (696)
+..+ .+|..|.-+...+|++..+.+.|++... .....|+.+...|.-+|.-..|..+.++-.. |+..+--.|
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3445 8888999999999999999999998765 3567899999999999998999998876542 333333333
Q ss_pred H-HHHH-hCCChhHHHHHHHHhHHC--C----CCCCcchHHHHHHHHHcc-----------CChHHHHHHHHHHHHcCCC
Q 005454 128 I-AGFA-NKGFSREALQVFSRMQKD--R----FEPTDYTHVSALNACAQL-----------LDLRRGKQIHGKIVVGNLG 188 (696)
Q Consensus 128 i-~~~~-~~g~~~~A~~l~~~m~~~--g----~~p~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g~~ 188 (696)
+ ..|. +.+.+++++++-.+.... + +.| ..|..+--+|... .....+.+.++..++.+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~--~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKP--RGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3 2333 457788888777776651 1 222 2333333333211 1244577788888777643
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNIL 264 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 264 (696)
|+.+.-.|.--|+..++++.|.....+... .+...|..+.-.+...+++.+|+.+.+...+.- .-|......-+
T Consensus 477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI 554 (799)
T ss_pred -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence 333334455567888999999888776654 577889999999999999999999988766541 11122222222
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC--CccchHHHHHHHHhhcC-chh
Q 005454 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP--DKFSISSVVSSCAKLAS-LYH 341 (696)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~-~~~ 341 (696)
..-...++.++|......+.. .|... .+..+.++-...+++...+.-.--.| ...++..+..-....+. ..-
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s 629 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS 629 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence 223346777777666554431 11110 01122223333444444433211111 12233222221111100 000
Q ss_pred HHHHHHHHHHhCCCCchH-HHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 005454 342 GQVVHGKAVVLGVDDDLL-VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL 420 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 420 (696)
... +.+....|... .+..+ ...|......+.+.++.++|...+.+... +
T Consensus 630 e~~----Lp~s~~~~~~~~~~~~~------------------------~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~ 679 (799)
T KOG4162|consen 630 ELK----LPSSTVLPGPDSLWYLL------------------------QKLWLLAADLFLLSGNDDEARSCLLEASK--I 679 (799)
T ss_pred ccc----cCcccccCCCCchHHHH------------------------HHHHHHHHHHHHhcCCchHHHHHHHHHHh--c
Confidence 000 11111111110 00000 12344444444555555555544444443 2
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHH--HHHh-CCCCC-CHHH
Q 005454 421 KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVD--LIKS-LPHKP-NSLI 494 (696)
Q Consensus 421 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~-~~~~p-~~~~ 494 (696)
.|- ...|......+...|...+|.+.|.... .+.|+ +....++..++.+.|+..-|.. ++.. ....| +...
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ea 756 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEA 756 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHH
Confidence 222 2333333344455566666666555543 33443 3455556666666665544444 4443 33344 5678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
|-.|...+.+.|+.+.|...|.-++++++.+|.
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999998876663
No 88
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=1.5e-05 Score=82.16 Aligned_cols=383 Identities=13% Similarity=0.099 Sum_probs=190.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHH
Q 005454 168 QLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDL 244 (696)
Q Consensus 168 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 244 (696)
..+++..+....+.+++. .+....+.....-.+...|+.++|......-.. .+.+.|..+.-.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 334455555555555442 222222222222234456777777766665544 3445677777666667777777777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC-CC
Q 005454 245 FQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED-VR 320 (696)
Q Consensus 245 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~ 320 (696)
|+.....+ +-|...+.-+--.-++.|+++.....-..+. ......|..++.++.-.|+...|..++++..+.. -.
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 77776643 2233334333333344555555444433333 3345567777777777888888888877776643 23
Q ss_pred CCccchHHHHH------HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHH
Q 005454 321 PDKFSISSVVS------SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSW 392 (696)
Q Consensus 321 p~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~ 392 (696)
|+...+..... .....|.++.|.+.+......-+ .....-..-.+.+.+.|++++|..++..+.. ||...|
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y 255 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY 255 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence 44444433222 22345555555555444333211 1222223345667777888888888877664 333333
Q ss_pred HH-HHHHHHHcCChHHHH-HHHHHH----------------------------------HHCCCCCCHHHHHHHHHHHhc
Q 005454 393 NS-MINGYAQNGQDLEAL-ALYDKL----------------------------------LQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 393 ~~-li~~~~~~g~~~~A~-~l~~~m----------------------------------~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+- +..++.+-.+..+++ .+|... .+.|++|-...+.++ +-.
T Consensus 256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~ 332 (700)
T KOG1156|consen 256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKD 332 (700)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---Hhc
Confidence 32 333332222222233 333333 333332222222111 111
Q ss_pred CCcHHH----HHHHHHHhHHhh--------C-CCCChH--HHHHHHHHHhccCCHHHHHHHHHhC-CCCCCHH-HHHHHH
Q 005454 437 ADLFER----GQNHFDSISAVH--------G-ITPSLD--HYACMINLLGRSSDVDKAVDLIKSL-PHKPNSL-IWSTLL 499 (696)
Q Consensus 437 ~g~~~~----a~~~~~~m~~~~--------~-~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll 499 (696)
-...+- +..+...+.... . -+|... ++-.++..|-+.|+++.|..+++.. ...|+.+ .|..=.
T Consensus 333 p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~Ka 412 (700)
T KOG1156|consen 333 PEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKA 412 (700)
T ss_pred hhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHH
Confidence 111110 111111111000 0 023332 2334556666677777777776653 3345544 343444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+...|+++.|...++++.++|-.|...-..-++-..++++.++|.++.......|
T Consensus 413 RI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 413 RIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 555666677777777777777665554444445555666677777777666665544
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=6.6e-05 Score=80.99 Aligned_cols=195 Identities=16% Similarity=0.141 Sum_probs=115.8
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHHHHHHHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWNSMINGYA 400 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 400 (696)
+..|+.+..+-.+.|.+.+|.+-+-++ .|+..|...++...+.|.+++-.+.+....+ +.+..=+.+|-+|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 345666666666666666665544332 3556666677777777777776666654332 12223345666777
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.++..+..++. .-||..-...+..-|...|.++.|.-+|.... .|..|...+...|.++.|.
T Consensus 1178 kt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS----------N~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1178 KTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS----------NFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred HhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHH
Confidence 777666655443 35666666666677777777776666664432 3455555566666666665
Q ss_pred HHHHhCCC---------------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 481 DLIKSLPH---------------------------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 481 ~~~~~~~~---------------------------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+.-++... --...-..-|+.-|...|-+++-..+++..+.++....+.|..|+
T Consensus 1241 D~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELa 1320 (1666)
T KOG0985|consen 1241 DAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELA 1320 (1666)
T ss_pred HHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHH
Confidence 55444320 011222344555566667777777777777777777777777777
Q ss_pred HHHhhcC
Q 005454 534 NMYAACG 540 (696)
Q Consensus 534 ~~~~~~g 540 (696)
-.|++-.
T Consensus 1321 iLYskyk 1327 (1666)
T KOG0985|consen 1321 ILYSKYK 1327 (1666)
T ss_pred HHHHhcC
Confidence 7777643
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.9e-05 Score=83.16 Aligned_cols=369 Identities=12% Similarity=0.103 Sum_probs=174.1
Q ss_pred HHHccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCC-----------Cc-chHHHHHHHHHhCC
Q 005454 68 FYAKSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR-----------DS-VSYNTAIAGFANKG 135 (696)
Q Consensus 68 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----------~~-~~~~~li~~~~~~g 135 (696)
.|...|++|.|.+-...+. +..+|..|.+++.+..+++-|.-.+-.|... |. ..=.-..-.....|
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 3445566666655544443 3355666777776666666666555555310 00 11111112223445
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFD 215 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 215 (696)
..++|+.+|++-.+. -.+=..|-..|.+++|.++-+.--+..+. .+|-.-..-+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHH
Confidence 555555555555432 11112233344555554443322111111 112222222333444555555444
Q ss_pred hcCC-----------------------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 005454 216 RMNN-----------------------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272 (696)
Q Consensus 216 ~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 272 (696)
+... +|...|.-...-+-..|+.+.|+.+|...+. |-++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 4321 1111111122222234444445444444332 2333344444455
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch------------
Q 005454 273 IDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY------------ 340 (696)
Q Consensus 273 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~------------ 340 (696)
.++|-++-++- .|......+...|-..|++.+|...|.+.+ +|...|+.|-..+--+
T Consensus 954 ~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 954 TDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred chHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 55554444332 245556667777888888888888887765 3445555443322111
Q ss_pred ---hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--------------CCCchHHHHHHHHHHHcC
Q 005454 341 ---HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--------------TRNVVSWNSMINGYAQNG 403 (696)
Q Consensus 341 ---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------------~~~~~~~~~li~~~~~~g 403 (696)
.|..+|++ .|. .....+-.|-+.|.+..|+++-=+-. ..|+...+.-..-++.+.
T Consensus 1023 d~v~aArYyEe---~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEE---LGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHH---cch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 11111111 111 11223345666777666665421111 135555566666677777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 479 (696)
++++|..++-...+ |...+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.++|.+..|
T Consensus 1095 qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 88888877765544 334444444433 22233333333222112233 24566677888888888888
Q ss_pred HHHHHhCCC
Q 005454 480 VDLIKSLPH 488 (696)
Q Consensus 480 ~~~~~~~~~ 488 (696)
-+-|...+.
T Consensus 1165 tKKfTQAGd 1173 (1416)
T KOG3617|consen 1165 TKKFTQAGD 1173 (1416)
T ss_pred HHHHhhhhh
Confidence 877776653
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=4e-06 Score=88.54 Aligned_cols=296 Identities=12% Similarity=0.105 Sum_probs=135.0
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChhH-HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHH-h-----
Q 005454 199 DMYAKGGEIDKARWLFDRMNN--RNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACF-Q----- 269 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~----- 269 (696)
..+...|++++|++.+++-.. .|..+ .......+.+.|+.++|..+|..+...+ |+...|-..+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888877554 44444 4455667778888888888888888764 56665544444333 1
Q ss_pred cCCHHHHHHHHHhccCCChh--HHHHHHHHHHhcCCh-hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHH
Q 005454 270 TGRIDDAGRLFHVIKEKDNV--CWTTMIVGYTQNGKE-EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346 (696)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 346 (696)
....+....+++++...-+. +...+.-.+.....+ ..+...+..++..|+++ +|+.+-..|...........++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 12355556666655432111 111111111111122 23334444555555543 3333333333332222222222
Q ss_pred HHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-
Q 005454 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW--NSMINGYAQNGQDLEALALYDKLLQENLKPD- 423 (696)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 423 (696)
....... ...|...... =..-..|....| .-+...|-..|++++|++..++.++. .|+
T Consensus 167 ~~~~~~l---------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 167 EEYVNSL---------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHhh---------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 2222110 0000000000 000001222223 23344455556666666666655552 344
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCC-----C----HHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKP-----N----SLI 494 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-----~----~~~ 494 (696)
...|..-...+-+.|++.+|.+.++.... --.-|...-+-.+..+.|+|++++|.+.+.....+. | ..+
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~ 305 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCM 305 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHH
Confidence 23444444555566666666665555543 112233333444555556666666655554433211 1 112
Q ss_pred H--HHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 495 W--STLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 495 ~--~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
| .....+|.+.|++..|.+-+..+.+
T Consensus 306 Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 306 WFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 2223455556666666555554433
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.75 E-value=5.9e-05 Score=88.70 Aligned_cols=361 Identities=12% Similarity=0.040 Sum_probs=222.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHhcCCCChhH--HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 005454 196 ALTDMYAKGGEIDKARWLFDRMNNRNLVS--WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273 (696)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 273 (696)
.....|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|+.
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 33445666777777777666665432221 1122234455677777777766552221122223333344445678899
Q ss_pred HHHHHHHHhccC----CC---h---h--HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCc----cchHHHHHHHHhhc
Q 005454 274 DDAGRLFHVIKE----KD---N---V--CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK----FSISSVVSSCAKLA 337 (696)
Q Consensus 274 ~~A~~~~~~~~~----~~---~---~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~ 337 (696)
++|...+..... .+ . . ....+...+...|++++|...+++....-...+. .....+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 998888775531 11 1 1 1122334556789999999999987653111111 12334445566789
Q ss_pred CchhHHHHHHHHHHhCCC-----CchHHHHHHHhhHHhcCChHHHHHHHhcCCC-------CC----chHHHHHHHHHHH
Q 005454 338 SLYHGQVVHGKAVVLGVD-----DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-------RN----VVSWNSMINGYAQ 401 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~ 401 (696)
+++.|...+..+....-. ........+...+...|+++.|...+++... ++ ...+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999988887653211 1123445667778889999999988775431 11 1234455566777
Q ss_pred cCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHH-----HHHHHHHhc
Q 005454 402 NGQDLEALALYDKLLQE--NLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHY-----ACMINLLGR 472 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~ 472 (696)
.|++++|...+++.... ...|. ..++..+.......|+.++|.+.+..+............+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999999887653 11222 2334445556778899999999988875421111111111 112244556
Q ss_pred cCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHHhhcC
Q 005454 473 SSDVDKAVDLIKSLPHK--PNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEP------INAGPYIMLSNMYAACG 540 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g 540 (696)
.|+.+.|.+++...... ... ..+..+..++...|+.++|...++++++... ....++..++.+|...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 89999999998765431 111 1245666778889999999999999887531 12246778899999999
Q ss_pred ChhHHHHHHHHhhhCC
Q 005454 541 RWEDVASIRSSMKSKN 556 (696)
Q Consensus 541 ~~~~A~~~~~~m~~~~ 556 (696)
+.++|...+.+..+..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887643
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=1.4e-06 Score=85.62 Aligned_cols=157 Identities=11% Similarity=0.099 Sum_probs=86.2
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----C
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH----A 437 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~ 437 (696)
.....+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..| .+...+..++.. .
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHhCc
Confidence 33345566778888877777665 3455555567777778888888888888776 3333 333344444322 2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCh-HHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPN-SLIWSTLLSVCAMKGDI-KHGEMA 514 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~ll~~~~~~g~~-~~a~~~ 514 (696)
+.+.+|..+|+++.. ...++..+.+.+.-+....|++++|.+++++ +...|+ ..++..++......|+. +.+.+.
T Consensus 181 e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 356677777777654 3345555556666666666666666666554 222232 22444444444444544 445555
Q ss_pred HHHHHhcCCCC
Q 005454 515 ARHLFELEPIN 525 (696)
Q Consensus 515 ~~~~~~~~p~~ 525 (696)
..++....|..
T Consensus 259 l~qL~~~~p~h 269 (290)
T PF04733_consen 259 LSQLKQSNPNH 269 (290)
T ss_dssp HHHCHHHTTTS
T ss_pred HHHHHHhCCCC
Confidence 55555555543
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.73 E-value=4e-07 Score=92.42 Aligned_cols=216 Identities=17% Similarity=0.144 Sum_probs=172.8
Q ss_pred HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHH
Q 005454 333 CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 333 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 409 (696)
+.+.|++..|.-.|+.+++..+. +...|--|...-+..++-..|+..+++..+ .|....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 35677888888888888887764 778888888888888888888888887653 45667777888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHH
Q 005454 410 ALYDKLLQENLKPDSFTFVSVL-----------SACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll-----------~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 478 (696)
..++.-+... |... .+. ....+...+....++|-.+....+..+|.+++.+|.-+|.-.|.+++
T Consensus 374 ~~L~~Wi~~~--p~y~---~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKYV---HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhC--ccch---hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999887632 1110 000 12233344566677777777666767899999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 479 AVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 479 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.+.|+.. ..+| |..+||-|...+....+.++|..+|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999874 5567 5669999999999999999999999999999999999999999999999999999999876654
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.73 E-value=3.5e-06 Score=75.90 Aligned_cols=193 Identities=14% Similarity=0.061 Sum_probs=108.8
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 408 (696)
.|...|+...|+.-++++++..+. +..++..+...|.+.|..+.|.+.|+... +.+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 344444444444444444444332 44455555566666666666666666443 33444566666666666677777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
...|++....-.-|. ..||..+.-+..+.|+.+.|..+|++..+. .+-.......+.......|++..|..+++...
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 777766665322222 346666666666667777777777666541 12223445556666666777777766666543
Q ss_pred C--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 488 H--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 488 ~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
. .++..+.-..+..-...||.+.+.+.-.++....|.+..
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 2 245544444455555667776666666666666665443
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=4.4e-05 Score=82.46 Aligned_cols=131 Identities=11% Similarity=0.015 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH----HHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL 498 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 498 (696)
+...|........+.+.+..|.+...+...-...+-+...|+. ...++...|.++.|..-+...+..-+..+-.+-
T Consensus 966 ~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~ 1045 (1238)
T KOG1127|consen 966 LCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTD 1045 (1238)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhh
Confidence 3456666666666666666666665554432222334444443 334455567777776666555444444433333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.. .-.|+++.+...|++++.+-..+... ...++.....++.-+.|...+-+...
T Consensus 1046 l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1046 LTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 333 44678999999999998877555443 33445555667777778777655543
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.70 E-value=0.00014 Score=73.63 Aligned_cols=70 Identities=9% Similarity=0.140 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcCCC--CCcchHHHHHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKMPI--RDSVSYNTAIAG 130 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~ 130 (696)
.+|+.||+-+... ..++++..++++..+ .+..|..-|..-.+..+++..+++|.+-.. -++..|..-|+-
T Consensus 21 ~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~Y 95 (656)
T KOG1914|consen 21 DSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSY 95 (656)
T ss_pred HHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 6777777766555 777777777777653 455677777777777777777777766543 356666666653
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=7.9e-05 Score=75.51 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=60.0
Q ss_pred HHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHH
Q 005454 99 AHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRR 174 (696)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~ 174 (696)
+....|+++.|..+|-+.. .+|-+.|+.-..+|+..|++++|++=-.+-++ +.|+-. -|...-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 3345566666666665543 23555666666677777777766665555543 245433 45666666666677777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 175 GKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 175 a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
|..-|..-++.. +.+...++.|.+++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 777776666654 33555666666665
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.70 E-value=5.8e-05 Score=81.58 Aligned_cols=276 Identities=11% Similarity=0.059 Sum_probs=148.2
Q ss_pred HhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC-CccchHHHHHHHHhhcCchhHH
Q 005454 268 FQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP-DKFSISSVVSSCAKLASLYHGQ 343 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~ 343 (696)
...|.+.-|...|-.-. +.+..+|..+...+.++.+++-|...|...+. +.| |...|..........|+.-+..
T Consensus 827 sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444443222 23455566666666677777777777777664 333 3333333333334456555666
Q ss_pred HHHHHHH--H--hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-------------CCCchHHHHHHHHHHHcCChH
Q 005454 344 VVHGKAV--V--LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-------------TRNVVSWNSMINGYAQNGQDL 406 (696)
Q Consensus 344 ~~~~~~~--~--~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~ 406 (696)
.++..-. . .|--++...+-+........|+.++-+..-+.+. +.+...|.......-+.+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 6555522 1 2223344334333334445565555444444433 124456777777777778888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHH----HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH--hccCCHHHH
Q 005454 407 EALALYDKLLQE-NLKPDSFTFVSV----LSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL--GRSSDVDKA 479 (696)
Q Consensus 407 ~A~~l~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A 479 (696)
+|.++..+.+.- ..+-|..+|+.+ .+.++..|.++.|..- .+..|-...-..+...+ .-.++++++
T Consensus 985 ~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a-------~~~~~~evdEdi~gt~l~lFfkndf~~s 1057 (1238)
T KOG1127|consen 985 AALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA-------SWKEWMEVDEDIRGTDLTLFFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh-------hcccchhHHHHHhhhhHHHHHHhHHHHH
Confidence 888877775431 123344455432 2233445555544433 33333322212222222 336889999
Q ss_pred HHHHHhCCC----CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 480 VDLIKSLPH----KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 480 ~~~~~~~~~----~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.+.|++.-. +.| ++....++.+....+..+.|...+-+...+.|.+......|.-++.-..+-.....+.++.
T Consensus 1058 l~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls~~~~~sll~L~A~~ild~da~~ssaileel 1135 (1238)
T KOG1127|consen 1058 LEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLSKVQASSLLPLPAVYILDADAHGSSAILEEL 1135 (1238)
T ss_pred HHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhCccchhhHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 999987532 234 3355566666677888888988888888888888777776666655444433333333333
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=0.00032 Score=74.35 Aligned_cols=238 Identities=12% Similarity=0.079 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC-----------Cc
Q 005454 22 TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR-----------DI 90 (696)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----------~~ 90 (696)
|..|-..++.--....-|+.+.|....+.+. ++.+|..+.++|.+..++|-|.-.+..|... |.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 4555555654433235566666655444332 2378999999999999999998888887631 22
Q ss_pred -chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 005454 91 -ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169 (696)
Q Consensus 91 -~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 169 (696)
..-....-.-...|.+++|..++.+-.+ |..|=..|-..|.+++|+++-+.=.+--+ ..||..-..-+...
T Consensus 800 ~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 800 EEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEAR 871 (1416)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhh
Confidence 2222222233456777777777776543 33344455566777777776544322111 12444444444455
Q ss_pred CChHHHHHHHHHHH----------HcCC---------CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHH
Q 005454 170 LDLRRGKQIHGKIV----------VGNL---------GGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230 (696)
Q Consensus 170 ~~~~~a~~~~~~~~----------~~g~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 230 (696)
+|.+.|.+.|+..- +..+ ..|...|.--....-..|++|.|+.+|.... -|-.++.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~Vr 946 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVR 946 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhhee
Confidence 56666665554321 1110 1234444444444556788888888887654 3455555
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
..|-.|+.++|-++-++ .-|....-.+.+.|-..|++.+|..+|-+.
T Consensus 947 I~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred eEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55556666666655443 123344445555566666666666655544
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=2e-07 Score=91.44 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=116.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH---HHHHHHHHHhcc
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD---HYACMINLLGRS 473 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~ 473 (696)
..+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+..+.-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCc
Confidence 4456679999999988642 3556667788899999999999999999974 445532 233344444444
Q ss_pred CCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh-hHHHHHHH
Q 005454 474 SDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW-EDVASIRS 550 (696)
Q Consensus 474 g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 550 (696)
+.+.+|..+|+++..+ +++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5899999999997654 67788899999999999999999999999999999999999999999999999 66788888
Q ss_pred Hhhh
Q 005454 551 SMKS 554 (696)
Q Consensus 551 ~m~~ 554 (696)
+++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 8876
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.66 E-value=2.5e-05 Score=80.89 Aligned_cols=60 Identities=12% Similarity=-0.001 Sum_probs=41.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC---------CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEP---------INAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
....++...|+.+.|...++.+....- .........+.++...|++++|.+.+......+
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445556667777777777776644221 123456677888999999999999998876644
No 103
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.8e-05 Score=75.57 Aligned_cols=401 Identities=12% Similarity=0.044 Sum_probs=229.3
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCc-hhHHHHHHHHHHcCCCH
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGN-VFVRNALTDMYAKGGEI 207 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 207 (696)
.+.+..|+++.|+.+|.+..... ++|.+.|+.-..+++..|+++.|.+=-..-++. .|+ ..-|+.+..++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34567788888988888887654 447777888888888888888877655555443 344 34677777777778888
Q ss_pred HHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHH-HHHHHHH-HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 208 DKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKC-IDLFQEM-QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 208 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A-~~l~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
++|...|.+-.+. |...++-+..++ ..+.+ .+.|..- .-.++.-++.|-. +...-.+-.-+..+..
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~----~~~~~~~~~~~~p~~~~~l~~~p~t~~-----~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAY----LEDYAADQLFTKPYFHEKLANLPLTNY-----SLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhh----hHHHHhhhhccCcHHHHHhhcChhhhh-----hhccHHHHHHHHHhhc
Confidence 8888888776652 334555555555 11111 1111100 0001111111111 1111111111111111
Q ss_pred ccCCChhH---HHHHHHHHHhcCChhH-HHHHHHHhc-cCCCCC---------C-------------ccchHHHHHHHHh
Q 005454 283 IKEKDNVC---WTTMIVGYTQNGKEED-ALILFNEML-SEDVRP---------D-------------KFSISSVVSSCAK 335 (696)
Q Consensus 283 ~~~~~~~~---~~~li~~~~~~g~~~~-A~~~~~~m~-~~g~~p---------~-------------~~t~~~ll~~~~~ 335 (696)
.+. ++-. ...++.+.......+. ....-..+. ..+..| . ..-...+.++..+
T Consensus 158 ~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 158 NPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred CcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 110 0000 0011111110000000 000000000 000111 0 1123445556666
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch----------HHHHHHHHHHHcCCh
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV----------SWNSMINGYAQNGQD 405 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~~~~~g~~ 405 (696)
..+++.+.+-+....+.. .+...++....+|...|........-....+..-. +...+..+|.+.+++
T Consensus 237 kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDY 314 (539)
T ss_pred hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhH
Confidence 777888888888888776 46666777777888888777666554443322111 222344567777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhccCCHHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
+.|+..|++.+.....||..+ +....+++....+... -+.|... -...-...+.+.|++..|+..+.
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 999999988776555554322 2223344444433332 2334431 11222667788999999999987
Q ss_pred hCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 485 SLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 485 ~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++.. .| |...|.....+|.+.|++..|..-.+..++++|+....|..=+.++....+|++|.+.|.+-.+..
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7433 45 566889999999999999999999999999999999999999999999999999999998776533
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=0.00012 Score=75.70 Aligned_cols=190 Identities=14% Similarity=0.064 Sum_probs=101.7
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCc--hHHHHHHHHHHHcC
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNV--VSWNSMINGYAQNG 403 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g 403 (696)
..+...|+++.|...++...+..+. +...+..+...|...|++++|...++...+ ++. ..|..+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 3455566666666666666665432 355566667777777777777777766542 111 23455677777888
Q ss_pred ChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHhcCCcHHHHHHH--HHHhHHhhCCC--CChHHHHHHHHHHhccCC
Q 005454 404 QDLEALALYDKLLQENL-KPDSFTF-V--SVLSACLHADLFERGQNH--FDSISAVHGIT--PSLDHYACMINLLGRSSD 475 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~~--p~~~~~~~li~~~~~~g~ 475 (696)
+.++|+.+|++...... .+..... . .++.-+...|..+.+.++ ....... ... .........+.++...|+
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCC
Confidence 88888888887754321 1111111 1 222223333433333322 1111110 111 111122245666778888
Q ss_pred HHHHHHHHHhCCC--CC---C------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 476 VDKAVDLIKSLPH--KP---N------SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 476 ~~~A~~~~~~~~~--~p---~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.++|..+++.+.. +. . ....-...-++...|+.+.|.+.+..++.+-
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888866422 11 1 1112222334567899999999988887644
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.54 E-value=7.7e-06 Score=79.06 Aligned_cols=179 Identities=10% Similarity=0.034 Sum_probs=110.7
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-c---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----H
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-V---VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF----T 426 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 426 (696)
....+..++..|.+.|+++.|...|+++.. |+ . ..|..+..+|...|++++|+..++++++. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 345555666667777777777777765542 21 1 24566666777777777777777777663 33321 3
Q ss_pred HHHHHHHHhcC--------CcHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH
Q 005454 427 FVSVLSACLHA--------DLFERGQNHFDSISAVHGITPSLD-HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST 497 (696)
Q Consensus 427 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 497 (696)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333444433 5566667766666643 23321 11111110 0000000 001124
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999987654 68899999999999999999999888654
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.00024 Score=83.58 Aligned_cols=86 Identities=7% Similarity=0.078 Sum_probs=41.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHh---hCCCCC-hHHHHHHHHHHhc
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDS---FTFVSVLSACLHADLFERGQNHFDSISAV---HGITPS-LDHYACMINLLGR 472 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~ 472 (696)
...|+.+.|..++............ .....+..++...|+.++|...++..... .+..++ ..+...+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3455666666665544321111110 01233444555566666666666655432 122222 2344555566666
Q ss_pred cCCHHHHHHHHHh
Q 005454 473 SSDVDKAVDLIKS 485 (696)
Q Consensus 473 ~g~~~~A~~~~~~ 485 (696)
.|+.++|...+.+
T Consensus 744 ~G~~~~A~~~L~~ 756 (903)
T PRK04841 744 QGRKSEAQRVLLE 756 (903)
T ss_pred cCCHHHHHHHHHH
Confidence 6766666666654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.48 E-value=3.1e-06 Score=74.15 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H 488 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~ 488 (696)
.+|++.++ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 34553 33455566677777777777777664 223345667777777777777777777776642 2
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 489 KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 489 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
.| +...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 55677777777777888888888888888888888777777666543
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.47 E-value=6.9e-06 Score=76.17 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=107.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
+..|...|+++......+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456677777665444322211 11 012235566777777776665 335567888888888889999
Q ss_pred HHHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 476 VDKAVDLIKSLP-HKP-NSLIWSTLLSVC-AMKGD--IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 476 ~~~A~~~~~~~~-~~p-~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+++|...+++.. ..| +..++..+..++ ...|+ .++|..+++++++.+|+++.++..++..+...|++++|...++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988887743 344 556777777764 66676 5999999999999999999999999999999999999999999
Q ss_pred HhhhCC
Q 005454 551 SMKSKN 556 (696)
Q Consensus 551 ~m~~~~ 556 (696)
++.+..
T Consensus 169 ~aL~l~ 174 (198)
T PRK10370 169 KVLDLN 174 (198)
T ss_pred HHHhhC
Confidence 997744
No 109
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=4.1e-05 Score=71.45 Aligned_cols=302 Identities=11% Similarity=0.117 Sum_probs=168.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhHHHH-HHHHHHh
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACFQTGRIDDAGRLFHVIKEK--DNVCWTT-MIVGYTQ 300 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~-li~~~~~ 300 (696)
+.+.+..+.+..+++.|++++..-.+.. | +....+.+...|....++..|-..++++... ...-|.. -...+-+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 4555666677777888888777666543 3 4455566666677777788888887777642 2223322 2345666
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHH--HHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSS--CAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
.+.+..|+++...|... |+...-..-+.+ ....+++..++.+.++... +.+..+.+.......+.|+.+.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHH
Confidence 77777788777777642 221111111111 1123444444444443321 123333333344444555555555
Q ss_pred HHHhcCCC----CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh
Q 005454 379 TVFNMMPT----RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH 454 (696)
Q Consensus 379 ~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 454 (696)
+-|+...+ .....||.-+ +..+.|+++.|+++..+.++.|++.-+. + .-|...++..+ .
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-l--------gIGm~tegiDv-r------ 227 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-L--------GIGMTTEGIDV-R------ 227 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-c--------CccceeccCch-h------
Confidence 55555442 1223444322 2333455555555555555555321111 0 00111111000 0
Q ss_pred CC-CCChHHHHHHH-------HHHhccCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 455 GI-TPSLDHYACMI-------NLLGRSSDVDKAVDLIKSLPH----KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 455 ~~-~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+ .|-..+-+.++ -.+.+.|+++.|.+.+..||- +.|++|...+.-. -..++...+.+-+.-+++++
T Consensus 228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC
Confidence 00 01112223333 345788999999999999875 3577777665432 23566777777788889999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|-.++++..+.-+|++..-++-|..++.+-
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 988899999999999999999999887543
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.45 E-value=1.9e-05 Score=87.95 Aligned_cols=199 Identities=11% Similarity=0.130 Sum_probs=165.0
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC--------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--------RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTF 427 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 427 (696)
.....|-..+......++.+.|++++++... .-...|.++++.-...|.-+...++|+++.+- --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3556677777777888889999888887652 12347888888888889888999999999883 2234678
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP---NSLIWSTLLSVCA 503 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~ 503 (696)
..|...|...+.+++|.++++.|.++++ -....|..+++.+.+..+-++|..++++. ..-| ......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8889999999999999999999999665 66788999999999999999999998763 3223 3445556666678
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
++||.+++..+|+.++.-.|.....|..+++.-.+.|..+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999887763
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3.1e-07 Score=57.18 Aligned_cols=33 Identities=39% Similarity=0.541 Sum_probs=25.9
Q ss_pred CCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 186 NLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 186 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677788888888888888888888888887774
No 112
>PF12854 PPR_1: PPR repeat
Probab=98.45 E-value=3e-07 Score=57.28 Aligned_cols=33 Identities=36% Similarity=0.649 Sum_probs=23.7
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 284 (696)
|+.||..||++++.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777663
No 113
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=5.7e-05 Score=75.35 Aligned_cols=211 Identities=9% Similarity=0.007 Sum_probs=126.9
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh--HHHHHH
Q 005454 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD--LEALAL 411 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l 411 (696)
..+.|......+++..+. +..+++....++.+.| ++++++..++.+. .++..+|+.....+.+.|+. ++++.+
T Consensus 52 ~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 334444444444443322 2233333333444444 4566666665544 23444566554445555542 566777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc---CCH----HHHHHHH-
Q 005454 412 YDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS---SDV----DKAVDLI- 483 (696)
Q Consensus 412 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~- 483 (696)
++++++.. +-|..+|.....++.+.|.++++++.++++.+. -.-+...|+....++.+. |.. +++.++.
T Consensus 131 ~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 77777643 334566766666677777777777777777753 223344555554444433 222 4566666
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC------------------
Q 005454 484 KSLPHKP-NSLIWSTLLSVCAMK----GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG------------------ 540 (696)
Q Consensus 484 ~~~~~~p-~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------ 540 (696)
+.+...| |...|+.+...+... ++..+|...+.+++..+|.++.+...|+++|+...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 3344455 566898888888774 34567888899999999999999999999998743
Q ss_pred ChhHHHHHHHHh
Q 005454 541 RWEDVASIRSSM 552 (696)
Q Consensus 541 ~~~~A~~~~~~m 552 (696)
..++|.++++.+
T Consensus 288 ~~~~a~~~~~~l 299 (320)
T PLN02789 288 DSTLAQAVCSEL 299 (320)
T ss_pred cHHHHHHHHHHH
Confidence 236677777777
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=1.3e-05 Score=70.15 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=87.0
Q ss_pred CCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 456 ITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 456 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+.|+ .+..+...+...|++++|...|+... ..| +...|..+..++...|++++|...++++++++|.++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3455 35567888999999999999998743 344 6779999999999999999999999999999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCC
Q 005454 534 NMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.++...|++++|...+++..+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.38 E-value=7.3e-06 Score=70.46 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
.+..-.+...+...|++++|..+|+-... .| +..-|-.|..+|...|++++|...|.++..++|++|.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 45555667778899999999999987533 45 56688999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 538 ACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..|+.+.|.+-|+...... ..+|+..++..+.+..++.|.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhhc
Confidence 9999999999999886522 1357777777777777666643
No 116
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=3.7e-05 Score=78.53 Aligned_cols=218 Identities=18% Similarity=0.195 Sum_probs=154.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhH
Q 005454 230 SGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEED 306 (696)
Q Consensus 230 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 306 (696)
.-+.++|++.+|.-.|+...... +-+...|..|.......++-..|...+.+..+ .|....-+|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 34567788888888888777664 33456677777777777777777777766653 356667777778888888889
Q ss_pred HHHHHHHhccCCCC--------CCccchHHHHHHHHhhcCchhHHHHHHHH-HHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 307 ALILFNEMLSEDVR--------PDKFSISSVVSSCAKLASLYHGQVVHGKA-VVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 307 A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
|+..++.-+....+ ++..+-.. ........+....++|-.+ ...+..+|+.+...|.-.|--.|+++.|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99888877543210 01110000 1111122233444444444 4445457888999999999999999999
Q ss_pred HHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 378 WTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 378 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
...|+... +.|...||.|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-.+..
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999776 34677999999999999999999999999999 789863 455566678999999999988876553
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=2e-05 Score=82.40 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=117.6
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
.++|-...-..+...+.++|-...|..+|++. ..|-..|.+|+..|+..+|..+..+-.+ -+||+..|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34455566667788888888888888888864 5677788888888888888888888777 4788888888888
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKP-NSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~ 510 (696)
......-+++|.++++..... .-..+.....+.++++++.+.++. +...| ...+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 777777777787777665432 011111222334555555555543 33333 23355555555555555555
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
|.+.|.+.+.++|++...|+.++-+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 5555555555555555555555555555555555555555554433
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=1.5e-05 Score=83.40 Aligned_cols=210 Identities=10% Similarity=0.037 Sum_probs=139.6
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCCh
Q 005454 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQD 405 (696)
Q Consensus 328 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 405 (696)
.+...+...|-...|..+++.. ..+...+.+|+..|+.+.|..+...-. +|+...|-.+.+......-+
T Consensus 403 ~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 3444455556666666666543 234456667777777777766655333 45666666666666666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
++|.++++..... .-..+.......++++++.+.|+.-.+-+ +....+|-.+..+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 7777776654321 11111111233677788877777655422 22345666667777778888888877765
Q ss_pred -CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 486 -LPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 486 -~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
....||.. .||++-.+|.+.|+..+|...++++++-+-++...+....-...+.|.|++|.+.+.++.+-
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 44566554 89999999999999999999999988888777777777777788889999999988888653
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=4.6e-05 Score=70.43 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC--CCCCHHHHHHH
Q 005454 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP--HKPNSLIWSTL 498 (696)
Q Consensus 421 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l 498 (696)
.|+......+-.++...|+-+....+...... .-..+.......+....+.|++.+|...+.+.. .+||...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433225555667777777777777766543 334455666668888899999999999998753 35788899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..+|-+.|+.+.|...+.+++++.|.++.++..|+..|.-.|+.++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999988776544
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.28 E-value=7.6e-05 Score=69.22 Aligned_cols=157 Identities=10% Similarity=0.103 Sum_probs=117.0
Q ss_pred HhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
+-.|.+.|+++.+....+.+..+. ..+...++.++++..+++.++.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446788888877655554332221 01223567788888888887753 556678888888999999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHH-hccCC--HHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLL-GRSSD--VDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
..|++..+. .+.+...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999988752 234577888888864 67777 599999998754 345 56688889999999999999999999999
Q ss_pred hcCCCCCchHHHH
Q 005454 520 ELEPINAGPYIML 532 (696)
Q Consensus 520 ~~~p~~~~~~~~l 532 (696)
++.|++..-+..+
T Consensus 172 ~l~~~~~~r~~~i 184 (198)
T PRK10370 172 DLNSPRVNRTQLV 184 (198)
T ss_pred hhCCCCccHHHHH
Confidence 9998877655433
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.28 E-value=5.1e-05 Score=83.46 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=116.0
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
.++..+-.|.....+.|..++|+.+++...+ +.||. .....+..++.+.+.+++|....++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577788888899999999999999999998 67886 4667777889999999999999998875 33334677788
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+..++...|++++|.++|++.. ..|+ ..+|.++..++...|+.++|...|+++++...+....|..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 8899999999999999999865 3454 6689999999999999999999999999987555454443
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.27 E-value=5.3e-05 Score=84.65 Aligned_cols=208 Identities=18% Similarity=0.226 Sum_probs=164.7
Q ss_pred hhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC--------CcchHHHHHHHHHccCChhHHHHHHhcCCCC
Q 005454 48 HMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR--------DIISWNALLSAHARSGSVQDLRALFDKMPIR 119 (696)
Q Consensus 48 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~ 119 (696)
+.+.+.+.|.....|-..+......+++++|++++++.... -...|.++++.-..-|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 34445555555588888888889999999999999987653 3457888888888888888888999888653
Q ss_pred -C-cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CchhHHHH
Q 005454 120 -D-SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG-GNVFVRNA 196 (696)
Q Consensus 120 -~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 196 (696)
| ...|..|...|.+.+.+++|-++|+.|.+. .......|...+..+.+..+-+.|..++..+++.-++ -.......
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 2 346888899999999999999999999864 3345567888888888888888999999888876433 13455666
Q ss_pred HHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 197 LTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
.+.+-.++|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 77778899999999999988875 3456899999999999999999999999988877654
No 123
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.24 E-value=0.0028 Score=60.75 Aligned_cols=303 Identities=13% Similarity=0.087 Sum_probs=185.2
Q ss_pred HHHHHHHHHccCChHHHHHHHccCCCCCcchHHHHH---HHHHccCChhHHHHHHhcCCCCCcchHHHHH---HHHHhCC
Q 005454 62 HNRLLHFYAKSGKLFYARDLFDKMPLRDIISWNALL---SAHARSGSVQDLRALFDKMPIRDSVSYNTAI---AGFANKG 135 (696)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g 135 (696)
.--|-+.+...|.+..|..-|....+-|+..|-++- ..|...|+-..|+.-|++..+.-...+.+-| ..+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 344667777888888898888888888877776654 4677778777777777666532222223222 3567888
Q ss_pred ChhHHHHHHHHhHHCCCCCCcch----------------HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYT----------------HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTD 199 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t----------------~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 199 (696)
.+++|..=|+...+. .|+..+ ....+..+...||...+......+++.. +.|...+..-..
T Consensus 121 ele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 889998888888765 332221 1122333444556666666666665543 345566666666
Q ss_pred HHHcCCCHHHHHHHHHhc---CCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 200 MYAKGGEIDKARWLFDRM---NNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+|...|++..|+.-+... .+.++.++--+-..+...|+.+.++..+++-.. +.||....-.. |-+ +.+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---YKk---lkKv 269 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---YKK---LKKV 269 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---HHH---HHHH
Confidence 666666666665544333 234555555555566666666666666665554 23554332211 111 1111
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch---HHHHHHHHhhcCchhHHHHHHHHHHhC
Q 005454 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI---SSVVSSCAKLASLYHGQVVHGKAVVLG 353 (696)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 353 (696)
.+.++. +......++|.++++..+...+.......+++ ..+-.++..-+.+.+|++.-.+++...
T Consensus 270 ~K~les------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 270 VKSLES------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred HHHHHH------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 111111 12345677888888888887765433233333 334455667788888888888887754
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN 388 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 388 (696)
. .|+.++.--..+|.-...+|+|+.-|+...+.|
T Consensus 338 ~-~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 P-DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred c-hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3 257788778888999999999999998876543
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=7.7e-05 Score=72.06 Aligned_cols=180 Identities=10% Similarity=-0.026 Sum_probs=125.6
Q ss_pred ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCC--chHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-Cch---HHHH
Q 005454 323 KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD--DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVV---SWNS 394 (696)
Q Consensus 323 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 394 (696)
...+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+.+.+ | +.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 3456667778889999999999999998876432 124667788999999999999999998763 2 222 4566
Q ss_pred HHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 395 MINGYAQN--------GQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 395 li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
+..++... |+.++|.+.|+++... .|+.. ....+... .. . .... ......
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHH---------HHHHHH
Confidence 66666654 7889999999999884 56543 22211111 00 0 0000 011225
Q ss_pred HHHHHhccCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP----HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
+.+.|.+.|++++|...++... ..| ....|..+..++...|++++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6677889999999998887642 233 345888999999999999999998888766554
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.13 E-value=0.00024 Score=78.30 Aligned_cols=142 Identities=11% Similarity=0.043 Sum_probs=114.5
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVS 429 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ 429 (696)
...+...+..|.......|..++|..+++...+ | +...+..++.++.+.+++++|+..+++... ..|+.. ....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 445688888999999999999999999998763 4 455788899999999999999999999998 467765 4555
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLL 499 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll 499 (696)
+..++.+.|.+++|..+|+++.. ..+-+...+..+..++.+.|+.++|...|++... .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 56678899999999999999986 2333478888999999999999999999988532 34455555544
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.5e-06 Score=52.86 Aligned_cols=35 Identities=40% Similarity=0.636 Sum_probs=32.4
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 005454 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTD 156 (696)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 156 (696)
++||++|.+|++.|++++|.++|.+|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.12 E-value=2.8e-05 Score=67.70 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
......++..+...|++++|.+.++.... .| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34555667777778888888888776422 34 56688888888888999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhC
Q 005454 538 ACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~ 555 (696)
..|++++|.+.+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999877663
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.09 E-value=0.00024 Score=65.85 Aligned_cols=151 Identities=15% Similarity=0.105 Sum_probs=76.2
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 438 (696)
..+-..+...|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 344445555555555555555433 2233344445555666666666666666665532 444555655556666666
Q ss_pred cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 439 LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 439 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
++++|..-|.+..+- ..-+...++.|.-.|.-.|+++.|..++...... .|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666655555431 1122334444544555555555555555443221 13444444444455555555555443
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.027 Score=61.21 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=27.9
Q ss_pred HHhcCCHHHHHHHHHh-c----cCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 267 CFQTGRIDDAGRLFHV-I----KEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
+...|..++|..++.. . ..-+...-+--+..+...+++.+..++-.++...|
T Consensus 200 L~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 200 LELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 4456667777666621 1 12233333344555566666666666666666543
No 130
>PLN02789 farnesyltranstransferase
Probab=98.08 E-value=0.0015 Score=65.30 Aligned_cols=226 Identities=10% Similarity=0.044 Sum_probs=139.2
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc-CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
-..+...++.++|+.++.++++ +.|+..| |..--.++...+ .++++...+..+++.... +..+|+...-.+.+.|
T Consensus 44 ra~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 3344556677777777777765 3444332 333333344444 457777777777776554 4445555544455555
Q ss_pred Ch--HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---Cc----H
Q 005454 373 VT--DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA---DL----F 440 (696)
Q Consensus 373 ~~--~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~---g~----~ 440 (696)
+. +++...++.+. .+|..+|+...-.+...|+++++++.++++++.+ .-|...|+.....+.+. |. .
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccH
Confidence 42 55666666554 4577788888888888899999999999998865 33345555555444443 22 2
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc----CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC--------
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRS----SDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG-------- 506 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g-------- 506 (696)
++...+...+.. -.+-+...|+.+..+|... ++..+|.+++.+.. ..| +......|+..+....
T Consensus 200 e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~ 277 (320)
T PLN02789 200 DSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD 277 (320)
T ss_pred HHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence 456777766654 2334567788787777763 44566877776643 244 4557777888776532
Q ss_pred ----------ChHHHHHHHHHHHhcCCCCC
Q 005454 507 ----------DIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 507 ----------~~~~a~~~~~~~~~~~p~~~ 526 (696)
..++|..+++.+-+.||-..
T Consensus 278 ~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~ 307 (320)
T PLN02789 278 TVDTLAEELSDSTLAQAVCSELEVADPMRR 307 (320)
T ss_pred hhhccccccccHHHHHHHHHHHHhhCcHHH
Confidence 23567777777765666433
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.07 E-value=0.00066 Score=75.64 Aligned_cols=168 Identities=15% Similarity=0.159 Sum_probs=97.6
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHH
Q 005454 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS-NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGY 298 (696)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 298 (696)
.+...|..|+..|...+++++|.++.+...+. .|+...+- .+...+...++.+++..+ .++...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 45567888888888888888888888866554 45544332 222244455554444322 233333
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
....++.-...+...|.. ..-+...+..+..+|.+.|+.+++..+++++++..+ .|+.+.|.+...|+.. +++.|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHH
Confidence 344444333333444443 222333556666666677777777777777777663 3666666666666666 666666
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.++.+. +..|...+++.++.++|.++..
T Consensus 170 ~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 170 TYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHHH-----------HHHHHhhhcchHHHHHHHHHHh
Confidence 665542 2335555666666777766666
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=7.9e-06 Score=51.70 Aligned_cols=35 Identities=34% Similarity=0.756 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999973
No 133
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.04 E-value=0.034 Score=60.49 Aligned_cols=159 Identities=11% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDL---EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+-+.|+..+-+.++.. +|+-+++.-.... +-|..+-..++..|+-.|-+..|.+.|..+--+ .+.-|...|- +.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-HH
Confidence 3466777777777655 4555555544432 344556667778888888888888888877543 5555544332 23
Q ss_pred HHHhccCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHHhhcC
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI----NAGPYIMLSNMYAACG 540 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g 540 (696)
..+...|++..+...++.... ..-..+-..+..| .++|.+....+...---.+.-. -..+=..........+
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556677766666554211 0001111222223 3456655544433221122211 1122345666777888
Q ss_pred ChhHHHHHHHHhh
Q 005454 541 RWEDVASIRSSMK 553 (696)
Q Consensus 541 ~~~~A~~~~~~m~ 553 (696)
+.++-.+.+..|+
T Consensus 594 ~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 594 RGTQLLKLLESMK 606 (932)
T ss_pred cHHHHHHHHhccc
Confidence 8888888887776
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.00071 Score=68.22 Aligned_cols=145 Identities=17% Similarity=0.177 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-SACLHADLFERGQNHFDSISAVHGITPS-LDHYACMI 467 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 467 (696)
..+....-.+...|+.++|+..++.++.. .||...|..+. ..+...++.++|.+.++.+.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 34444445566779999999999998884 67766665554 578889999999999999875 3566 55666788
Q ss_pred HHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
++|.+.|++.+|..+++.... +-|+..|..|..+|...|+..++... .+..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 999999999999999987543 34677999999999999998777654 45668889999999
Q ss_pred HHHHHHhhhCC
Q 005454 546 ASIRSSMKSKN 556 (696)
Q Consensus 546 ~~~~~~m~~~~ 556 (696)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887754
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0021 Score=59.65 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=77.0
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH----HHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCh
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMIN----LLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDI 508 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~ 508 (696)
.+..+++-|.+.++.|.+- .+-.+.+.|.. ...-.+++.+|.-+|+++.. .|+..+.+..+.++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 3444555555555555431 12223333333 33334567777777777755 47778888888888889999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH-HHHHhh
Q 005454 509 KHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS-IRSSMK 553 (696)
Q Consensus 509 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 553 (696)
++|+.+++.++..++.+|.+...++-+-...|+-.++.. .+.+.+
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 999999999999999999988888888888887766543 444443
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00064 Score=68.55 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=104.5
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN-SLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~ 510 (696)
.....|.+++|+..+..+.. ..+-|........+.+.+.++.++|.+.++++. ..|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34567899999999999886 444556666778899999999999999998864 3576 6688889999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|...++....-+|+++..|..|+.+|...|+..+|..-+.++..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877643
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=50.34 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 005454 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEP 154 (696)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 154 (696)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999988887
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.92 E-value=0.00016 Score=73.60 Aligned_cols=120 Identities=13% Similarity=0.168 Sum_probs=89.7
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 506 (696)
.|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++.. ..| +...+.....-|...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 3444555566677777777776653 244 33345666666666777777766532 234 4556666667788999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+++.|..+++++.++.|.+..+|..|+.+|...|++++|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999998885
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.91 E-value=0.00023 Score=61.85 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CC
Q 005454 411 LYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PH 488 (696)
Q Consensus 411 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 488 (696)
+|++.+. ..|+. .....+...+...|++++|.+.|+.+... -+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 44543 44555666777888899999888888752 2446677888888888889999998888764 23
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 489 KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 489 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
.| +...+..+...+...|+.+.|...++++++++|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 56678888888999999999999999999999987653
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=2e-05 Score=49.48 Aligned_cols=34 Identities=29% Similarity=0.669 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 005454 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP 255 (696)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 255 (696)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.88 E-value=0.00041 Score=70.69 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=93.6
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (696)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++.. +-|...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334556666677888888888888887766667777888888888888888888888642 3344445545556778888
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCCC
Q 005454 440 FERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPHK 489 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 489 (696)
++.|..+.+++.. ..|+ ..+|..|+..|...|++++|+-.++.+|..
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 8888888888874 3444 568888888888888888888888887754
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0031 Score=58.09 Aligned_cols=164 Identities=16% Similarity=0.160 Sum_probs=111.7
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCCCchHHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNS---MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+.-+...+|+.+.|...++.+...=+.++.. -..-+-..|++++|+++++.+++.+ +.|.+++..=+-..-..|..
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCc
Confidence 3344455666666666666544211111111 1123445788899999999988875 55567776666666667777
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---ChHHHHHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG---DIKHGEMAA 515 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g---~~~~a~~~~ 515 (696)
-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++. ..| ++..+..+...+...| +.+.|.+.+
T Consensus 137 l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788888877776 567888999999999999999999988888753 345 4445566665554443 778899999
Q ss_pred HHHHhcCCCCCchHH
Q 005454 516 RHLFELEPINAGPYI 530 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~ 530 (696)
.+++++.|.+...+.
T Consensus 215 ~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 215 ERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHhChHhHHHHH
Confidence 999999986654443
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.83 E-value=0.00046 Score=60.69 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhcCChHH
Q 005454 437 ADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPHK-PNS----LIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~----~~~~~ll~~~~~~g~~~~ 510 (696)
.++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.+... ||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445555555555554322111 0122223445555566666666655553321 222 233444555566666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
|...++.. .-.+-.+..+..++++|.+.|++++|...|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666442 22233445566777777777777777777654
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0023 Score=59.45 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=129.2
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
-+...|...|.......-...-..+.......+.......++-++-+ ++.+.+.......|......-...|.+.|+++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD 125 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence 34455556665543333222222233333333333333344444443 44555555544445444444455699999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARH 517 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~ 517 (696)
+|.+..+.. -+.+....=+..+.+..+++-|.+.++.|..-.+..+.+.|..++.+ .+.+..|.-+|+.
T Consensus 126 eAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE 198 (299)
T KOG3081|consen 126 EALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEE 198 (299)
T ss_pred HHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 999987652 24455555577788999999999999999876777788888877764 3468899999999
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
+-+.-|+++...+..+.+....|+|++|..+++...++..
T Consensus 199 ~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 199 LSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9998888999999999999999999999999999887554
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0052 Score=68.76 Aligned_cols=232 Identities=11% Similarity=0.123 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHH
Q 005454 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALN-ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALT 198 (696)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 198 (696)
+...|..|+..|...+++++|.++.+...+. .|+...+..... .+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445666666666666666666666644433 444443322222 22233332222211 222
Q ss_pred HHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 199 DMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
+......++.....+...|.. .+..++-.+..+|-+.|+.++|..+++++.+.. +-|....+.+.-.|+.. ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222233333222222222222 122345556666666666666666666666654 33455556666666666 66666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHh-CCC
Q 005454 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-GVD 355 (696)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~ 355 (696)
.+++.+. +..|....++.++.+++.++... .|+...+ -.++.+.+... +..
T Consensus 169 ~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 169 ITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFT 220 (906)
T ss_pred HHHHHHH-----------HHHHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccc
Confidence 6655443 22355566677777777776653 2322211 11111122111 222
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYA 400 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 400 (696)
--..++-.|-..|-+..+++++..+|+.+.+ .|.....-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 2233444455556666666666666665542 34444555555554
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.74 E-value=7.1e-05 Score=56.15 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-ChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG-RWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 554 (696)
+..+|..+...+...|++++|+..|+++++++|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46688899999999999999999999999999999999999999999999 79999999987754
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.72 E-value=0.00026 Score=56.66 Aligned_cols=92 Identities=21% Similarity=0.241 Sum_probs=74.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
+..+...+...|++++|.+.++... ..| +...+..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456667777888888888887643 233 34577778888888899999999999999999988888999999999999
Q ss_pred ChhHHHHHHHHhhh
Q 005454 541 RWEDVASIRSSMKS 554 (696)
Q Consensus 541 ~~~~A~~~~~~m~~ 554 (696)
++++|...++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 148
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.71 E-value=0.081 Score=54.42 Aligned_cols=442 Identities=13% Similarity=0.116 Sum_probs=242.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 165 (696)
|+.+|+.||.-+... .+++++..++++.. | ....|..-|..-....+++....+|.+....-.. ...|..-|.-
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn--lDLW~lYl~Y 95 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN--LDLWKLYLSY 95 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh--HhHHHHHHHH
Confidence 888999999887766 89999999999864 3 4567999999999999999999999998865333 3344444433
Q ss_pred HHc-cCChHH----HHHHHHHH-HHcCCCCc-hhHHHHHHHHH---------HcCCCHHHHHHHHHhcCCCChh----HH
Q 005454 166 CAQ-LLDLRR----GKQIHGKI-VVGNLGGN-VFVRNALTDMY---------AKGGEIDKARWLFDRMNNRNLV----SW 225 (696)
Q Consensus 166 ~~~-~~~~~~----a~~~~~~~-~~~g~~~~-~~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~~~~----~~ 225 (696)
-.+ .++... ..+.|+.. .+.|+++- -..|+..+..+ ....+++..++++.++...... .|
T Consensus 96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW 175 (656)
T KOG1914|consen 96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW 175 (656)
T ss_pred HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence 322 222222 22333333 34454432 33455555433 3344566677777777652222 34
Q ss_pred HHHHHH-------H------HhCCCchHHHHHHHHHHH--cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhH
Q 005454 226 NLMISG-------Y------LKNGQPKKCIDLFQEMQL--LGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVC 290 (696)
Q Consensus 226 ~~li~~-------~------~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 290 (696)
+-...- . -+...+..|.++++++.. .|..-+..++ -..|-.++..+ +..
T Consensus 176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~v-------p~~~T~~e~~q---------v~~ 239 (656)
T KOG1914|consen 176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAV-------PPKGTKDEIQQ---------VEL 239 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCC-------CCCCChHHHHH---------HHH
Confidence 422110 0 011223334444444322 1211111110 00000011000 011
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHh-ccCCCCCCccc-hHHHH----HHHHhhcCc-------hhHHHHHHHH
Q 005454 291 WTTMIVGYTQNGKE--------EDALILFNEM-LSEDVRPDKFS-ISSVV----SSCAKLASL-------YHGQVVHGKA 349 (696)
Q Consensus 291 ~~~li~~~~~~g~~--------~~A~~~~~~m-~~~g~~p~~~t-~~~ll----~~~~~~~~~-------~~a~~~~~~~ 349 (696)
|-.+|..=..++-- ....-.+++. +-.+..|+..- +...+ ..+...|+. +++..+++..
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~ 319 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA 319 (656)
T ss_pred HHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence 22222211111000 0000011111 11112222110 00000 112222322 3445555555
Q ss_pred HHhCCCCchHHHHHHHhhHHhcC---ChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 005454 350 VVLGVDDDLLVSSALIDMYCKCG---VTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP 422 (696)
Q Consensus 350 ~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 422 (696)
+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-.++..-.+....+.|..+|.+..+.+..+
T Consensus 320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 54433334455554443221111 1334444444443 1223467777777778888999999999999988777
Q ss_pred -CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC---CCC--HHHHH
Q 005454 423 -DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH---KPN--SLIWS 496 (696)
Q Consensus 423 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~p~--~~~~~ 496 (696)
+.....+++.-++ +++..-|.++|+.-.+.+| .+...-.+.++-+...++-..|..+|++... .|| ..+|.
T Consensus 400 hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~ 476 (656)
T KOG1914|consen 400 HHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWD 476 (656)
T ss_pred chhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHH
Confidence 5566677776554 4778899999998777543 4445567788999999999999999988643 233 45999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.++.--..-||...+.++-++....-|.+. ..-..+.+-|.-.+.+..-..-++.|
T Consensus 477 r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 477 RMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 999988999999999999998887766322 23445666777777766555555544
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.7e-05 Score=46.48 Aligned_cols=31 Identities=39% Similarity=0.697 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 005454 122 VSYNTAIAGFANKGFSREALQVFSRMQKDRF 152 (696)
Q Consensus 122 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 152 (696)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 150
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.69 E-value=0.00042 Score=70.92 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=48.3
Q ss_pred HhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
+...|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 344555555555554432 222 334555555556666666666666666666666666666666666666666666666
Q ss_pred HHHHhhh
Q 005454 548 IRSSMKS 554 (696)
Q Consensus 548 ~~~~m~~ 554 (696)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 6655544
No 151
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.67 E-value=0.0027 Score=55.81 Aligned_cols=124 Identities=16% Similarity=0.257 Sum_probs=82.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--HHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDS----FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--DHYAC 465 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 465 (696)
|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|.. ...-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 44445444 3677777877888887753 332 23333445677788888888888888763 322222 23445
Q ss_pred HHHHHhccCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
+...+...|++++|+..++..+.. .....+..+...+...|+.++|...|++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 677788888888888888775443 344566677778888888888888887753
No 152
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.67 E-value=0.061 Score=53.72 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=78.1
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..+.-+...|+...|.++-.+..-|+...|-..+.+|+..++|++-.++... +-.++-|..++.+|...|...+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHH
Confidence 3345556678888888888888888888888888888888888877665432 2234778888888888888888
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
|..+...+. +..-+.+|.++|.+.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888776531 134577888888888887665443
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=4.7e-05 Score=59.71 Aligned_cols=77 Identities=17% Similarity=0.274 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHH
Q 005454 474 SDVDKAVDLIKSLPH-KP---NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 474 g~~~~A~~~~~~~~~-~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
|++++|+.+++++.. .| +...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555544321 12 334555566777777777777777777 6666666666667778888888888888777
Q ss_pred HH
Q 005454 550 SS 551 (696)
Q Consensus 550 ~~ 551 (696)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 154
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0034 Score=57.89 Aligned_cols=161 Identities=12% Similarity=0.143 Sum_probs=125.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS-ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
|..++-+....|+.+-|...++++... + |.+.-...+-. -+...|++++|+++++++.++ -+.|..+|-.-+-++
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 444555667789999999999998885 2 55432222221 245678999999999999874 355677787777788
Q ss_pred hccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC---ChhHH
Q 005454 471 GRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG---RWEDV 545 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 545 (696)
-..|+--+|++-+..... ..|...|.-|...|...|+++.|.-.+++++=..|-++..+..+++++.-.| +.+-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888888877765432 3588899999999999999999999999999999999999999999988777 55667
Q ss_pred HHHHHHhhhCC
Q 005454 546 ASIRSSMKSKN 556 (696)
Q Consensus 546 ~~~~~~m~~~~ 556 (696)
.+++.+..+-.
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 78887776543
No 155
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.63 E-value=0.00012 Score=54.08 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=48.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...+...|++++|...++++++.+|.++.++..++.++...|++++|..++++..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556778888899999999999988888888889999999999999999888887653
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=6.4e-05 Score=45.89 Aligned_cols=31 Identities=42% Similarity=0.763 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGL 253 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 253 (696)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887764
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.0017 Score=56.39 Aligned_cols=100 Identities=14% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 455 GITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 455 ~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
|++++. +..-....-+...|++++|..+|+-+.. .-+..-|..|..+|...++++.|...|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 555442 2222334445689999999999986432 3456678899999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+.+|...|+.+.|...|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987765
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.60 E-value=0.00074 Score=57.00 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=50.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 005454 464 ACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNM 535 (696)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 535 (696)
-.++..+.+.|++++|.+.++.+.. .|+ ...+..+..++...|+++.|...++.++...|.+ +..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555555555555544321 122 2244445555666666666666666666665553 3345566666
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
|...|++++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 66666666666666666543
No 159
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.57 E-value=0.00098 Score=63.11 Aligned_cols=104 Identities=14% Similarity=0.148 Sum_probs=73.3
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCChHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSL-IWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~~~ 510 (696)
..+.+++.+|+..|..++. +.| |...|..-..+|.+.|.++.|++-.+. +...|... +|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456777777777777764 344 345555567777788888777776665 34456544 88888889999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
|++.|+++++++|++......|-.+--+.+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 999999999999988866666654443333
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.09 Score=52.09 Aligned_cols=96 Identities=14% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHh-hCCCCC--hHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLK-----PDSF-TFVSVLSACLHADLFERGQNHFDSISAV-HGITPS--LDH 462 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 462 (696)
+..+...+.+.|++++|+++|++....... ++.. .|...+-++...|++..|.+.|+..... .++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 344666777888888888888887664322 1221 2333344556678888888888876532 122222 234
Q ss_pred HHHHHHHHh--ccCCHHHHHHHHHhCC
Q 005454 463 YACMINLLG--RSSDVDKAVDLIKSLP 487 (696)
Q Consensus 463 ~~~li~~~~--~~g~~~~A~~~~~~~~ 487 (696)
...|++++- ....+++|..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 455666663 3446677777777664
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.50 E-value=0.00026 Score=52.83 Aligned_cols=52 Identities=13% Similarity=0.291 Sum_probs=45.7
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...|++++|...++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999987765
No 162
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.50 E-value=0.0016 Score=54.90 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSV 501 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~ 501 (696)
..+...+...|++++|...|..+.+.+.-.| ....+..+..++.+.|++++|.+.++.+.. .|+ ..++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3444445555566666666655554321111 123444466666666666666666665322 222 3456777777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+...|+.+.|...++++++..|+++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 88888888888888888888887765443
No 163
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0021 Score=63.29 Aligned_cols=262 Identities=11% Similarity=0.069 Sum_probs=154.8
Q ss_pred HHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchh
Q 005454 266 ACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 341 (696)
.+.+..++.+|+..+.... ..+..-|..-+..+..-|++++|+--.+.-.+ ++|. ..+..-.-+++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHHH
Confidence 3455566666666665443 23444566666666666666666655554443 2222 1233333444444444444
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHHHHH-HHHHHHcCChHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSWNSM-INGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m 415 (696)
|.+.++.- ..+ ....|...++... +|...+|-.+ ..++...|++++|...--..
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i 195 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI 195 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence 44444310 000 0111112222221 1222334333 23455677777777766665
Q ss_pred HHCCCCCCHHHHHHHHH--HHhcCCcHHHHHHHHHHhHHhhCCCCChHH-------------HHHHHHHHhccCCHHHHH
Q 005454 416 LQENLKPDSFTFVSVLS--ACLHADLFERGQNHFDSISAVHGITPSLDH-------------YACMINLLGRSSDVDKAV 480 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A~ 480 (696)
++. .++. .+..+++ ++...++.+.|...|++..+ +.|+-.. +..=.+-..+.|++.+|.
T Consensus 196 lkl--d~~n-~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 196 LKL--DATN-AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred Hhc--ccch-hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 552 2222 2222332 23356677777777776652 3344221 112234567899999999
Q ss_pred HHHHh-CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 481 DLIKS-LPHK-----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 481 ~~~~~-~~~~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+.+ +... |+...|.....+..+.|+.++|..-.+.+++++|.-..+|..-++++...++|++|.+-+++..+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99976 4443 45566777777788999999999999999999999999999999999999999999999988765
Q ss_pred C
Q 005454 555 K 555 (696)
Q Consensus 555 ~ 555 (696)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 3
No 164
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0038 Score=61.59 Aligned_cols=134 Identities=13% Similarity=0.204 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998643 3334445444443 33457777799999999985 4567788899999
Q ss_pred HHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 469 LLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+.+.|+.+.|..+|++... -|.. .+|...+.--.+.|+.+....+.+++.+.-|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999998543 2333 4999999999999999999999999999988743
No 165
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.44 E-value=0.027 Score=58.76 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=110.6
Q ss_pred HHHHHHHhCCC--chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 005454 227 LMISGYLKNGQ--PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304 (696)
Q Consensus 227 ~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (696)
..-.+|.+..+ +-+.+--+++|++.|-.|+..... ..++-.|.+.+|-++|. ++|..
T Consensus 603 ~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EAAklFk------------------~~G~e 661 (1081)
T KOG1538|consen 603 TARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEAAKLFK------------------RSGHE 661 (1081)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHHHHHHH------------------HcCch
Confidence 33344444333 233444567788888888876543 34667788888877764 45666
Q ss_pred hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcC
Q 005454 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMM 384 (696)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 384 (696)
..|+++|.+|.-- -..+-+...|..++-+.+...-.+- .-+..--.+...++...|+.++|..+.
T Consensus 662 nRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~--- 726 (1081)
T KOG1538|consen 662 NRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC--- 726 (1081)
T ss_pred hhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh---
Confidence 7777777666421 1122233334433333322221110 000001123345555666666665542
Q ss_pred CCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH
Q 005454 385 PTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA 464 (696)
Q Consensus 385 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 464 (696)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+.-|-++|.+|-. ..
T Consensus 727 ---------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~k 777 (1081)
T KOG1538|consen 727 ---------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LK 777 (1081)
T ss_pred ---------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HH
Confidence 344545555555444422 2334444454455566677778888877743 23
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC-CCCH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH-KPNS 492 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~-~p~~ 492 (696)
.++++....+++.+|..+-++.|. .||+
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccc
Confidence 577888889999999988888775 3443
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.42 E-value=0.18 Score=50.96 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=81.4
Q ss_pred HccCChHHHHHHHccCCCC---C------cchHHHHHHHHHccCChhHHHHHHhcCCCC-CcchHHHHHHH--HHhCCCh
Q 005454 70 AKSGKLFYARDLFDKMPLR---D------IISWNALLSAHARSGSVQDLRALFDKMPIR-DSVSYNTAIAG--FANKGFS 137 (696)
Q Consensus 70 ~~~g~~~~a~~~~~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~--~~~~g~~ 137 (696)
-+.+++.+|.++|.++... + .+.-+.++++|.-. +++..........+. ....|-.+..+ +.+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 4677888888888877642 1 22334567777543 344444444433321 13345555554 3567888
Q ss_pred hHHHHHHHHhHHC--CCCC------------CcchHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CchhHHHHHHH
Q 005454 138 REALQVFSRMQKD--RFEP------------TDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLG----GNVFVRNALTD 199 (696)
Q Consensus 138 ~~A~~l~~~m~~~--g~~p------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~ 199 (696)
.+|++.+..-... +-.| |-.-=...+..+...|.+.+|+.++..+...=++ .+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 8888888766543 2221 1111234455667889999999888887765444 78888888777
Q ss_pred HHHcC
Q 005454 200 MYAKG 204 (696)
Q Consensus 200 ~~~~~ 204 (696)
++++.
T Consensus 176 mlsrS 180 (549)
T PF07079_consen 176 MLSRS 180 (549)
T ss_pred HHhHH
Confidence 77654
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.0057 Score=65.46 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=73.0
Q ss_pred CCCCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 385 PTRNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 385 ~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
...|...|...+.+.... +...+|..+|++.++ ..|+.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345677787777775432 236688888888888 567753 333322221110 01111
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKS---LP-HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~---~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.. .+++..+.+..++ ++ ...+..+|.++.-.....|++++|...++++++++| +..+|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 0112222222222 11 122334555554444555666666666666666666 4556666666
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|+.++|...+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666665544
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.0015 Score=59.34 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP---N-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
..+..+...+.+.|++++|...+++.. ..| + ...|..+...+...|+++.|...++++++..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566666667777777777776542 112 2 35778888888899999999999999999999988888888999
Q ss_pred HhhcCC
Q 005454 536 YAACGR 541 (696)
Q Consensus 536 ~~~~g~ 541 (696)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.38 E-value=0.0011 Score=62.91 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=78.0
Q ss_pred HHHHhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 467 INLLGRSSDVDKAVDLIKS-LPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
.+-+.+.+++++|+..+.+ +...| |.+.|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 3456778999999999977 44455 677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh
Q 005454 545 VASIRSSMKS 554 (696)
Q Consensus 545 A~~~~~~m~~ 554 (696)
|.+.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987755
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.36 E-value=0.0016 Score=58.97 Aligned_cols=93 Identities=10% Similarity=-0.057 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...|..++..+...|++++|...+++.. ..|+ ..+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4556667777778888888888887642 2222 3478889999999999999999999999999999998889998
Q ss_pred HHh-------hcCChhHHHHHHHHh
Q 005454 535 MYA-------ACGRWEDVASIRSSM 552 (696)
Q Consensus 535 ~~~-------~~g~~~~A~~~~~~m 552 (696)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 988 888888776666544
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.36 E-value=0.00051 Score=52.10 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...+...++++.|.++++++++++|.++..+...+.+|...|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999887644
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.35 E-value=0.0039 Score=56.64 Aligned_cols=131 Identities=12% Similarity=0.142 Sum_probs=87.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
....+..+...+...|++++|...|++.++....|+ ...+..+...+.+.|++++|...+.+..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566777778888888888888888876432222 356777777788888888888888887752 1223455666
Q ss_pred HHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
+..+|...|+...+..-++.. ...+++|...++++++++|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 677777777666554332221 123677888999999988876 5566666665554
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.33 E-value=0.0026 Score=65.19 Aligned_cols=104 Identities=11% Similarity=0.046 Sum_probs=64.4
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|++.|.++.+. -+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|+++.|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 33455556666655555541 1223445555556666666666666666553 2233 455677777777888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAAC 539 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 539 (696)
...++++++++|.++.....+..+..+.
T Consensus 90 ~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 90 KAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 8888888888888877766665554433
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.28 E-value=0.00019 Score=44.55 Aligned_cols=33 Identities=33% Similarity=0.560 Sum_probs=30.9
Q ss_pred HHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 515 ARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 515 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
++++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 175
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.23 E-value=0.0028 Score=50.40 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666665532 1222344444444455555555555555444
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.22 E-value=0.0011 Score=48.83 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+...+.+.|++++|.+.|+.+.. .|+ ...|..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788888888888887533 464 45888899999999999999999999999999864
No 177
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.3 Score=48.88 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh
Q 005454 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK 335 (696)
Q Consensus 256 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 335 (696)
...+.+..+.-+...|+...|.++-....-|+...|-..+.+|+..++|++-.++-.. +-.+..|..++.+|..
T Consensus 176 ~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 176 VGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred hcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3456677777788899999999999999889999999999999999999987775432 2245888889999999
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVF 381 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 381 (696)
.|...+|..+...+ .+..-+.+|.++|++.+|.+.-
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 99888887776651 1245678888999888887653
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.18 E-value=0.0013 Score=51.55 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHH
Q 005454 402 NGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 479 (696)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4566666666666665321 11233333455566666666666666655 1 11121 12222335555566666666
Q ss_pred HHHHH
Q 005454 480 VDLIK 484 (696)
Q Consensus 480 ~~~~~ 484 (696)
++.++
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.015 Score=55.72 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=85.5
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMK---GDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+-|.+.|-.|...|.+.|+++.|..-|.+.. . .++...+..+..++... ....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 4567899999999999999999999987643 2 34566777777766543 35679999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 532 LSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
|+-.+...|++.+|...|+.|.+....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999886653
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.15 E-value=0.076 Score=52.62 Aligned_cols=99 Identities=8% Similarity=0.120 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc------chHHHHHHHHhhcCchhHHHHHHHHHHhC--CCCc--hHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF------SISSVVSSCAKLASLYHGQVVHGKAVVLG--VDDD--LLV 360 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~ 360 (696)
+..+...+.+.|++++|+++|++........+.. .+...+-.+...|+...|...++...... +..+ ..+
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4455667777788888888887776532221111 11222223344556666666666554332 2211 233
Q ss_pred HHHHHhhHHh--cCChHHHHHHHhcCCCCCc
Q 005454 361 SSALIDMYCK--CGVTDDAWTVFNMMPTRNV 389 (696)
Q Consensus 361 ~~~li~~y~~--~g~~~~A~~~~~~~~~~~~ 389 (696)
...|+.+|-. ...++.|..-|+.+.+.|.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 4445555533 3455566666666665544
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.13 E-value=0.02 Score=51.75 Aligned_cols=81 Identities=10% Similarity=0.015 Sum_probs=51.0
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 466 (696)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|++++|+..++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566677777778888888888888876432221 236666777777788888888888777642 12223444444
Q ss_pred HHHHh
Q 005454 467 INLLG 471 (696)
Q Consensus 467 i~~~~ 471 (696)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.051 Score=47.79 Aligned_cols=131 Identities=12% Similarity=0.119 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC------CCCHH
Q 005454 420 LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH------KPNSL 493 (696)
Q Consensus 420 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~p~~~ 493 (696)
..|+..--..|..+....|+..+|...|++... .-+.-|....-.+..+....+++.+|...++.+.. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 467776667788888888888888888888776 13445667777788888888888888888877432 2443
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
-..+..++...|..+.|+..|+.++.-.| ++..-...+..+.++|+.++|..-+..+.+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34566788889999999999999999888 567777888889999999988776655544
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.01 E-value=0.48 Score=47.99 Aligned_cols=428 Identities=11% Similarity=0.089 Sum_probs=207.9
Q ss_pred HHccCChhHHHHHHhcCCCC---C------cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH--Hc
Q 005454 100 HARSGSVQDLRALFDKMPIR---D------SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC--AQ 168 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~~~---~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~ 168 (696)
.-+.+++.+|.++|.++-+. + .+.-+-+|++|..++ .+.....+....+. .| ...|..+..++ .+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 35778999999999888632 2 223456777777653 34444444444432 34 45566776664 57
Q ss_pred cCChHHHHHHHHHHHHc--CCC------------CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--------CChhHHH
Q 005454 169 LLDLRRGKQIHGKIVVG--NLG------------GNVFVRNALTDMYAKGGEIDKARWLFDRMNN--------RNLVSWN 226 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~ 226 (696)
.+.+..|.+.+..-... +-. +|-..-+..++.+.+.|++.+++.++++|.. -++.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888888877766544 221 2333445667788888999999888888754 3667777
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHH---cCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhccCCChhHHHHHHHHHHh--
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQL---LGLNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQ-- 300 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~-- 300 (696)
.++-.+.+. .|-++.+ ..+-||- | -++-.|.+. ...|. .. ++... |.......++.-..-
T Consensus 172 ~~vlmlsrS--------YfLEl~e~~s~dl~pdy--Y-emilfY~kki~~~d~-~~-Y~k~~-peeeL~s~imqhlfi~p 237 (549)
T PF07079_consen 172 RAVLMLSRS--------YFLELKESMSSDLYPDY--Y-EMILFYLKKIHAFDQ-RP-YEKFI-PEEELFSTIMQHLFIVP 237 (549)
T ss_pred HHHHHHhHH--------HHHHHHHhcccccChHH--H-HHHHHHHHHHHHHhh-ch-HHhhC-cHHHHHHHHHHHHHhCC
Confidence 755555442 2222211 1222221 1 122222221 11111 00 00000 000001111111100
Q ss_pred cCChhHHHHHHHHhccCCCCCCccch-HHHHHHHHhhcCchhHHHHHHHHHHhCCC----CchHHHHHHHhhHHhcCChH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSI-SSVVSSCAKLASLYHGQVVHGKAVVLGVD----DDLLVSSALIDMYCKCGVTD 375 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~y~~~g~~~ 375 (696)
..+..--++++..-...-+.|+.... ..+...... +.+.+..+-+.+....+. --...+..++....+.++..
T Consensus 238 ~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~ 315 (549)
T PF07079_consen 238 KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTE 315 (549)
T ss_pred HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 00111111111111222244442211 111111111 333333333332222111 01234455555566666666
Q ss_pred HHHHHHhcCC--CCCch-------HHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH---HhcCC
Q 005454 376 DAWTVFNMMP--TRNVV-------SWNSMINGYA----QNGQDLEALALYDKLLQENLKPDSFT-FVSVLSA---CLHAD 438 (696)
Q Consensus 376 ~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a---~~~~g 438 (696)
.|.+.+.-+. +|+.. +-.++-+..+ ..-+..+-+.+|+...... .|..- ...++.+ +-+.|
T Consensus 316 ~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~g 393 (549)
T PF07079_consen 316 EAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEIG 393 (549)
T ss_pred HHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhcC
Confidence 6666655443 22221 0111112222 1122233445555555533 33221 1122221 22333
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChHHHHHHHH-----HHhcc---C---CHHHHHHHHHhCCCCC----CHHHHHHHHHH-
Q 005454 439 -LFERGQNHFDSISAVHGITPSLDHYACMIN-----LLGRS---S---DVDKAVDLIKSLPHKP----NSLIWSTLLSV- 501 (696)
Q Consensus 439 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~-----~~~~~---g---~~~~A~~~~~~~~~~p----~~~~~~~ll~~- 501 (696)
.-+.|..+++.+.+ +.|.-.-....+. .|..+ . ++-+-..+++..+..| +...-|.|..|
T Consensus 394 ~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAE 470 (549)
T PF07079_consen 394 QCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAE 470 (549)
T ss_pred CccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHH
Confidence 36777777776654 2222111111121 12111 1 1122334455555543 34455666555
Q ss_pred -HHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 -CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 -~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+..+|++.++.-...-+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4689999999999999999999 89999999999999999999999997653
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.93 E-value=0.027 Score=60.46 Aligned_cols=49 Identities=8% Similarity=0.026 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHhc--CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 508 IKHGEMAARHLFEL--EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 508 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...+.+.+++...+ +|.++..|..++-.+...|++++|...+++..+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 44556666666664 67788889999999999999999999999998766
No 185
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.93 E-value=0.022 Score=49.37 Aligned_cols=95 Identities=11% Similarity=0.035 Sum_probs=73.1
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
..-.+...+...|++++|.++|+-+. ..+..-|..|..++-..|++++|+..|....... +-|..++-.+..++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 33445556678889999999888665 3456678888888888999999999999888854 3345777788888888
Q ss_pred CCcHHHHHHHHHHhHHhhC
Q 005454 437 ADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~ 455 (696)
.|+.+.|++.|+......+
T Consensus 116 lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 116 CDNVCYAIKALKAVVRICG 134 (157)
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 9999999999988876543
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.73 Score=49.10 Aligned_cols=228 Identities=14% Similarity=0.075 Sum_probs=113.2
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC-CCc------------chHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL-RDI------------ISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNT 126 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 126 (696)
..|..|...-.+.-.++.|+..|-+... +.+ ..-.+=|.+| -|++++|.+++-.|.++|..
T Consensus 693 rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDLA---- 766 (1189)
T KOG2041|consen 693 RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDLA---- 766 (1189)
T ss_pred HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhhh----
Confidence 5666666655555566666666655432 111 1111112222 37888888888888777653
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCc----chHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTD----YTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
|..+.+.|++-...++++.- |-..|. ..|..+-..++....++.|.+.+..--. ....+++|.
T Consensus 767 -ielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly 833 (1189)
T KOG2041|consen 767 -IELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLY 833 (1189)
T ss_pred -HHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHH
Confidence 45555666666555554321 111111 2455555555555566666655543211 123445555
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
+..++++-+.+-..+++ |....-.|...+...|..++|.+.|-+- + .| ...+..|...+++.+|.++-+.
T Consensus 834 ~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 834 RLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555444443 2233445556666666666666554321 1 11 1233445555666666666655
Q ss_pred ccCCChhHHHH--------------HHHHHHhcCChhHHHHHHHHhcc
Q 005454 283 IKEKDNVCWTT--------------MIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 283 ~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..-|.+.+.-+ -|..+.+.|++-.|-+++.+|.+
T Consensus 904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 55443332111 12334455555555555555543
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.90 E-value=0.1 Score=52.58 Aligned_cols=161 Identities=15% Similarity=0.088 Sum_probs=102.7
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCC---C----chHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTR---N----VVSWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
.|+-.|-...+++.-+++.+.+... + ...-....-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577788888888888877643 1 1122233445556 7899999999998666666788888877776
Q ss_pred HHhc---------CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH----HHHHHH---H----hC---CCC
Q 005454 433 ACLH---------ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD----KAVDLI---K----SL---PHK 489 (696)
Q Consensus 433 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~----~~---~~~ 489 (696)
.|-. ....++|+..|.+.- .+.|+..+--.++.++...|.-. +..++- . +- ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6531 234677887776553 45566543333344444444322 222222 1 11 112
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.|--.+.+++.++.-.||.+.|.+++++++++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4555678999999999999999999999999987643
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.90 E-value=0.0023 Score=47.79 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKG-DIKHGEMAARHLFELEP 523 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 523 (696)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455666777777777777777777653 2345 4558888888888888 79999999999998887
No 189
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.94 Score=48.90 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=78.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHH
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (696)
|..-...|.+-.+.-+...|+..+|.++-.+..-+|-..|-.-+.+++..+++++-+++-+.+. .+..|.-...
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 4445556667777777788888888888888888888888777888888888887666655543 2556666777
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
+|.+.|+.++|..+...... +.-.+.+|.++|++.+|.++
T Consensus 753 ~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred HHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 77777777777766554321 11456667777777666554
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.83 E-value=0.02 Score=58.86 Aligned_cols=59 Identities=14% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc
Q 005454 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK 284 (696)
Q Consensus 226 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 284 (696)
.++|..|.+.|..++++.+++.=...|+-||..|++.|+..+.+.|++..|.++...|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555544443
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.82 E-value=0.0064 Score=58.87 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIML 532 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 532 (696)
..|...+..+.+.|++++|...|+.+.. -|+. .++-.+..++...|+++.|...|+++++..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455555555666777777777765432 2332 3566677777888888888888888888777654 455666
Q ss_pred HHHHhhcCChhHHHHHHHHhhh
Q 005454 533 SNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 533 ~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+|...|++++|.++++++.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 7788888888888888887765
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.81 E-value=0.11 Score=49.94 Aligned_cols=55 Identities=7% Similarity=0.052 Sum_probs=46.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..-|.+.|++.-|..-++.+++..|+.+. +...+..+|...|..++|.++.....
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34577889999999999999998887654 57788899999999999999887654
No 193
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0011 Score=49.30 Aligned_cols=49 Identities=8% Similarity=0.107 Sum_probs=24.2
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
..|++++|+++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566666666655542 1223444444555555555555555555554
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.18 Score=52.89 Aligned_cols=101 Identities=14% Similarity=0.067 Sum_probs=57.7
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
..+|-.+-+.++-+++-. .+..+...+..-+.+...+..|.++|..+-.. ..++++....++|++|.
T Consensus 727 ~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAF 793 (1081)
T ss_pred hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhH
Confidence 344545555555444432 23334444444445566667777777766432 35777888889999999
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
.+-++.++--...|.....-++...++++|.+.|
T Consensus 794 alAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 794 ALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 9988888533333333344445555555554433
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.79 E-value=0.015 Score=46.66 Aligned_cols=80 Identities=13% Similarity=0.021 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCchhHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRF-EPTDYTHVSALNACAQLL--------DLRRGKQIHGKIVVGNLGGNVFVR 194 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 194 (696)
-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 999999999999887553 233566788889999999999999
Q ss_pred HHHHHHHHc
Q 005454 195 NALTDMYAK 203 (696)
Q Consensus 195 ~~li~~~~~ 203 (696)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988877654
No 196
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.78 E-value=0.0052 Score=62.44 Aligned_cols=65 Identities=15% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+...|+.+..+|...|++++|...++++++++|++..+ |..++.+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45577777777777777777777777777777777643 777777777777777777777776653
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.77 E-value=0.021 Score=56.36 Aligned_cols=127 Identities=19% Similarity=0.128 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA-CAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
.|-.+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666666666666777777777776432 1112222222222 22345666677787777766 455777788888888
Q ss_pred HcCCCHHHHHHHHHhcCC--C----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHc
Q 005454 202 AKGGEIDKARWLFDRMNN--R----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 251 (696)
.+.|+.+.|+.+|++... + ....|...+..=.+.|+.+.+..+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888765 2 2346888888777788888888887777764
No 198
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.011 Score=58.83 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=86.2
Q ss_pred HHHHhccCCHHHHHHHHHhCC--------C---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 467 INLLGRSSDVDKAVDLIKSLP--------H---------KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~--------~---------~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
.+.|.+.|++..|..-|++.. . ..-..++..|..+|.+.+++..|.+...++++++|+|.-+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 345666676666666655421 0 12244677888888999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..-+.+|...|+++.|+..|+++.+ ..|.+..|..++..+.+++++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999976 246667788888777777765
No 199
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.76 E-value=0.034 Score=46.37 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=64.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHh
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLG 471 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 471 (696)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45667788999999999999999886655 34666777888899999999999988876431111 1222233445677
Q ss_pred ccCCHHHHHHHHHh
Q 005454 472 RSSDVDKAVDLIKS 485 (696)
Q Consensus 472 ~~g~~~~A~~~~~~ 485 (696)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888776643
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.11 Score=48.48 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCC-----CCchHHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGV-----DDDLLVSSAL 364 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l 364 (696)
.-+.++..+...|.+.-.+..+++.++...+.++...+.+.+...+.|+.+.+...++...+..- .....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45667777888899999999999999876667777888888888999999999999998776433 3333344444
Q ss_pred HhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 430 (696)
...|.-.+++..|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|++ ..|...+-.++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhH
Confidence 4556777888889999987773 4666777766667778999999999999998 45665544433
No 201
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.72 E-value=0.008 Score=59.17 Aligned_cols=129 Identities=9% Similarity=0.021 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHH---hHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhC-------CCC-CCH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDS---ISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSL-------PHK-PNS 492 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 492 (696)
..|..|.+.|.-.|+++.|+...+. +.+.+|-.. ....+..+.+.+.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566666666677889999877654 223344332 2457788888999999999999888752 221 233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFEL----E--PINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.+--+|..+|....+++.|...+.+-+.+ + .....++..|+++|...|..+.|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35567788888888888888887765443 2 2345678899999999999999998876654
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.71 E-value=0.032 Score=44.90 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhcCC--------cHHHHHHHHHHhHHhhCCCCChHHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENL-KPDSFTFVSVLSACLHAD--------LFERGQNHFDSISAVHGITPSLDHY 463 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~~ 463 (696)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. .+.+.+.+++.|... +++|+.++|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 3456666667999999999999999999 899999999998866432 355677888888874 899999999
Q ss_pred HHHHHHHhc
Q 005454 464 ACMINLLGR 472 (696)
Q Consensus 464 ~~li~~~~~ 472 (696)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887754
No 203
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.70 E-value=0.003 Score=42.10 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+|..+..++...|++++|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888999999999999999999999999999998888764
No 204
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.65 E-value=0.82 Score=45.41 Aligned_cols=240 Identities=18% Similarity=0.204 Sum_probs=154.1
Q ss_pred hcCChhHHHHHHHHhccCCCCCCc--cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 300 QNGKEEDALILFNEMLSEDVRPDK--FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
-.|+++.|.+-|+.|... |.. ..+..+.-...+.|+.+.|+++-+..-..... -.....+++...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHH
Confidence 357777777777777642 221 11222333334567777777777776665433 345667788888899999999
Q ss_pred HHHHhcCC-----CCCch--HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCcHHHHHHH
Q 005454 378 WTVFNMMP-----TRNVV--SWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDSFT-FVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 378 ~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 446 (696)
+++.+.-. ++++. .--.|+.+-+. ..+...|...-.+..+ +.||.+. -..-..++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 98887543 34443 22233333222 2456666666666655 6787643 33344678899999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHH--H--HHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKA--V--DLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~--~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
++.+-+. .|....+...+ +.|.|+.... . +-++.| +|| .....++..+-...|++..|..-.+.+..+
T Consensus 286 lE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 286 LETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 9998753 56555543322 3455543222 1 122333 444 446667778888899999999999999999
Q ss_pred CCCCCchHHHHHHHHhhc-CChhHHHHHHHHhh
Q 005454 522 EPINAGPYIMLSNMYAAC-GRWEDVASIRSSMK 553 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~ 553 (696)
.|. ...|.+|+++-... |+-.++...+.+..
T Consensus 359 ~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 359 APR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred Cch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 984 56788899886655 99998888876554
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.63 E-value=0.21 Score=48.00 Aligned_cols=54 Identities=9% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 396 INGYAQNGQDLEALALYDKLLQE--NLKPDSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
..-|.+.|.+..|+.-|+.+++. +.+........+..++...|..++|..+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455556666666666655552 1111223444445555555555555554443
No 206
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.61 E-value=0.026 Score=51.30 Aligned_cols=90 Identities=14% Similarity=0.252 Sum_probs=68.7
Q ss_pred CCCchHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC----------------CcHHHHH
Q 005454 386 TRNVVSWNSMINGYAQ-----NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA----------------DLFERGQ 444 (696)
Q Consensus 386 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----------------g~~~~a~ 444 (696)
.++..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||..+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566666667766664 356666667778888888888888888888876542 2356789
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
+++++|.. +|+-||.+++..+++.+++.+..
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 99999987 69999999999999999887754
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=1.5 Score=47.39 Aligned_cols=328 Identities=13% Similarity=0.101 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 125 NTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLL---DLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 125 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
..+|.-+...+.+..|+++-..|...-..- ...|........+.. +.+.+..+-+++... . .+...|..+..-.
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~-~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L-TPGISYAAIARRA 517 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C-CCceeHHHHHHHH
Confidence 445666667777777777766664321111 344444444443332 222233333333221 2 2334455566666
Q ss_pred HcCCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH
Q 005454 202 AKGGEIDKARWLFDRMNNR--------NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI 273 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 273 (696)
..+|+.+.|..+++.=+.. +..-+...+.-..+.|+.+-...++-.|...- +...+... ..+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~ 588 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQ 588 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhc
Confidence 6788888888877654431 22234455566666777777666666554421 11111111 1122
Q ss_pred HHHHHHHHhccC-CChhHHHHHHHHHHhcCChhHHHHHHHH-h-cc-CCCCCCccchHHHHHHHHhhcCchhHHHHHH--
Q 005454 274 DDAGRLFHVIKE-KDNVCWTTMIVGYTQNGKEEDALILFNE-M-LS-EDVRPDKFSISSVVSSCAKLASLYHGQVVHG-- 347 (696)
Q Consensus 274 ~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-- 347 (696)
..|..++..... .|..+ +- .+.+.++..+++.-|.. - .. .-+.+-.........++++........+..+
T Consensus 589 p~a~~lY~~~~r~~~~~~---l~-d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 589 PLALSLYRQFMRHQDRAT---LY-DFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred hhhhHHHHHHHHhhchhh---hh-hhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 333333333222 11111 11 11222222222222211 0 00 0011222223334445554443222211111
Q ss_pred --------HHH-HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 348 --------KAV-VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 348 --------~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
.+. +.|......+.+--+.-+...|+...|.++-.+..-||-..|---+.+++..+++++-+++-+.+..
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 111 1122222223333444566778888899988888888888888888888888888877766554431
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 005454 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 419 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
+.-|.....+|.+.|+.++|.+++-+.. |. . -.+.+|.+.|++.+|.++--
T Consensus 744 -----PIGy~PFVe~c~~~~n~~EA~KYiprv~---~l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 744 -----PIGYLPFVEACLKQGNKDEAKKYIPRVG---GL---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -----CCCchhHHHHHHhcccHHHHhhhhhccC---Ch---H----HHHHHHHHhccHHHHHHHHH
Confidence 4567778888999999999988876542 11 1 46788888888888876643
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.53 E-value=0.025 Score=47.22 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=55.7
Q ss_pred HHHHhccCCHHHHHHHHHhCCC---C-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHhh
Q 005454 467 INLLGRSSDVDKAVDLIKSLPH---K-PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI---NAGPYIMLSNMYAA 538 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~---~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 538 (696)
..++-..|+.++|+.++++... . ++ ...+-.+.++++..|++++|..++++.++..|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3445556666666666654321 1 11 225556677777788888888888887777676 55556667777788
Q ss_pred cCChhHHHHHHHHh
Q 005454 539 CGRWEDVASIRSSM 552 (696)
Q Consensus 539 ~g~~~~A~~~~~~m 552 (696)
.|++++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887776443
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.52 E-value=0.026 Score=58.07 Aligned_cols=76 Identities=24% Similarity=0.270 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 005454 195 NALTDMYAKGGEIDKARWLFDRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT 270 (696)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 270 (696)
.++|+.|.+.|..+.+..++..=.+ ||..++|.||..+.+.|++..|.++..+|...+...+..|+..-+.++.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 3444445555555554444443322 444455555555555555555555555555554444555555444444444
No 210
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.39 E-value=1.7 Score=45.99 Aligned_cols=181 Identities=14% Similarity=0.093 Sum_probs=125.2
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTR---NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..+|..-++.-.+.|+.+.+.-.|++..-| -...|-..+.-....|+.+-|..++....+-..+-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888899999999999887644 2235666666566668888888888777664333333222222223
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHH---HHHHhCC-CCCCHHHHHHHHH-----HHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAV---DLIKSLP-HKPNSLIWSTLLS-----VCA 503 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~-~~p~~~~~~~ll~-----~~~ 503 (696)
+-..|+++.|..+++.+.++ . |+. ..-..-+....+.|..+.+. +++.... .+-+..+...+.- .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 56788999999999999874 3 654 34444567778899999888 5555432 2223222222222 234
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..++.+.|..++.++.+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999998877766
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.75 Score=46.08 Aligned_cols=21 Identities=5% Similarity=0.029 Sum_probs=13.3
Q ss_pred HHHHHHHHhhcCChhHHHHHH
Q 005454 529 YIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~ 549 (696)
+...+.+|...++.+++.+..
T Consensus 417 FkevgeAy~il~d~~kr~r~d 437 (486)
T KOG0550|consen 417 FKEVGEAYTILSDPMKRVRFD 437 (486)
T ss_pred HHHHHHHHHHhcCHHHHhhcc
Confidence 445666777777776666543
No 212
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=1.8 Score=46.23 Aligned_cols=115 Identities=12% Similarity=0.068 Sum_probs=70.1
Q ss_pred CCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CChhH------------HHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 005454 188 GGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNLVS------------WNLMISGYLKNGQPKKCIDLFQEMQLLGLN 254 (696)
Q Consensus 188 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 254 (696)
.|.+..|..|.......-.++.|+..|-+... +.+.. -.+=|.+| .|++++|.++|-+|-+..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 57788888888877777788888888877654 22211 11222222 4788888888877755432
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 255 PDEVTVSNILGACFQTGRIDDAGRLFHVIKEK-----DNVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 255 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
.+..+.+.|++-...++++.-... -...|+.+...+...-.|++|.+.|..
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456667776666666543211 123566666666666666666666654
No 213
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.30 E-value=0.033 Score=50.69 Aligned_cols=88 Identities=9% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc----------------CChHHHHH
Q 005454 119 RDSVSYNTAIAGFANK-----GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL----------------LDLRRGKQ 177 (696)
Q Consensus 119 ~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~~~~a~~ 177 (696)
+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+-+. .+.+.|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4444444455444322 44444444555555555555555555555544221 23455677
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 77777777777777777777777755544
No 214
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.26 E-value=0.065 Score=47.06 Aligned_cols=61 Identities=18% Similarity=0.264 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+...++..+...|+++.|...+++++..+|-+-..|..++.+|...|+..+|.++++++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5566777788999999999999999999999999999999999999999999999988853
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.23 E-value=0.39 Score=42.52 Aligned_cols=120 Identities=10% Similarity=0.104 Sum_probs=66.8
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPDSFTFV 428 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~ 428 (696)
|++..--.|.+.....|+..+|...|++.. ..|....-.+..+....+++.+|...++.+-+.+ -.|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 444444455555666666666666665443 2344555555555666666666666666665532 1222 333
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
.+...+...|.+.+|+.-|+....- -|+...-......+.++|+.++|.
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~---ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY---YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcchhHHH
Confidence 4455566666777777766666542 355444444455666666666554
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.8 Score=42.94 Aligned_cols=165 Identities=9% Similarity=0.059 Sum_probs=97.0
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCC--CCch--------HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPT--RNVV--------SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSV 430 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 430 (696)
+++|...|.-..-+.+-...|+.-.. ..+. .-+.++..+.-+|.+.-.+.++++.++..-+.+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555544444444444443222 1222 3355666666778888888889988886655566777777
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhh----CCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHh
Q 005454 431 LSACLHADLFERGQNHFDSISAVH----GITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHK--PNSLIWSTLLSVCAM 504 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~ll~~~~~ 504 (696)
.+.-.+.|+.+.|..+|+...+.. ++.-.......+...|.-+.++.+|...+.+++.. .|+...|+-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 788888999999999998776542 22222233333334455566666776666665542 233333333323333
Q ss_pred cCChHHHHHHHHHHHhcCCCC
Q 005454 505 KGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.|+...|.+..+.+.+..|..
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 566667777777777666643
No 217
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.16 E-value=0.015 Score=43.94 Aligned_cols=64 Identities=13% Similarity=0.240 Sum_probs=49.8
Q ss_pred HHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
..|.+.+++++|.+.++.+. ..| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 46777888888888887743 234 45577888888899999999999999999999987665444
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.14 E-value=0.0074 Score=46.34 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC---CCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELE----PI---NAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+++.+...+...|++++|+..+++++++. +. -..++..++.+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666667777777777777777766542 11 23457788888888888888888887654
No 219
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.04 E-value=0.1 Score=50.55 Aligned_cols=34 Identities=15% Similarity=0.156 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.+..+...+...|+.+.|...++++++..|++..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 4444555666778888888888888888886553
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=3.2 Score=45.63 Aligned_cols=179 Identities=11% Similarity=0.019 Sum_probs=118.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHhcCCCCCcch---HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 92 SWNALLSAHARSGSVQDLRALFDKMPIRDSVS---YNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 92 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
....-|++..+...++-|..+-..-..+.... ...-.+-+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34456777788888888888776654322111 222234456789999999988776632 233 235555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChh--HHHHHHHHHHhCCCchHHHHHHH
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLV--SWNLMISGYLKNGQPKKCIDLFQ 246 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 246 (696)
......-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+.... ... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55666667778888888876 555567899999999999998888887762 222 24456677777777777776655
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 005454 247 EMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEK 286 (696)
Q Consensus 247 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 286 (696)
+... .......+ +-..+++++|.+.+..++.+
T Consensus 488 k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 488 KFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred Hhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHH
Confidence 4322 22222222 45678899999999998854
No 221
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.83 E-value=2.5 Score=42.95 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=99.8
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH-HHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~ 465 (696)
-...|-..+..-.+....+.|..+|-+..+.| +.++...+.+++.-++ .|+..-|..+|+.-... + ||.. .-.-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f-~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--F-PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--C-CCchHHHHH
Confidence 34567777777777888888999999998888 6677778888887554 47778888888876653 2 4433 3345
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH--KPN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~--~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.++-+.+.++-+.|..+|+.... ..+ ..+|..++.--..-|+...+..+-+++.++-|+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888999999999985432 122 4588888888888899988888888888888864
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.77 E-value=0.61 Score=38.78 Aligned_cols=139 Identities=14% Similarity=0.190 Sum_probs=77.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
-.|..++..++..+...+ .+..-++-++--...+-+-+-..+.++.+-+.+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 346666677777666553 233334444433333333344445555544322222 233444433
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
.-+-.+. .+......-+......|+-+.-.+++..+.+-+..+|.....++++|.+.|...++.+++++.-++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333332 233344556777888999999999999988766678889999999999999999999999999998874
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.67 E-value=0.072 Score=43.86 Aligned_cols=90 Identities=12% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHhccCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC----chHHHHHHHHhhcCC
Q 005454 468 NLLGRSSDVDKAVDLIKSL-PHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA----GPYIMLSNMYAACGR 541 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 541 (696)
-++...|+++.|++.|.+. ..- .....||.-..+++..|+.++|..-+++++++..+.. .+|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888663 223 3667899999999999999999999999999874333 258888899999999
Q ss_pred hhHHHHHHHHhhhCCC
Q 005454 542 WEDVASIRSSMKSKNV 557 (696)
Q Consensus 542 ~~~A~~~~~~m~~~~~ 557 (696)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999998877664
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.48 E-value=0.022 Score=43.65 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC-------CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL-------PH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
.|+.+...|.+.|++++|++.+++. +. .|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444445555555555554444332 11 122 346667777777777777777777776653
No 225
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.47 E-value=3.1 Score=41.55 Aligned_cols=250 Identities=16% Similarity=0.146 Sum_probs=136.9
Q ss_pred CCCchHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHhccCC---ChhHHHHHHHHHHhcCChhHHHH
Q 005454 235 NGQPKKCIDLFQEMQLLGLNPDEVT--VSNILGACFQTGRIDDAGRLFHVIKEK---DNVCWTTMIVGYTQNGKEEDALI 309 (696)
Q Consensus 235 ~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 309 (696)
.|+++.|.+-|+.|... |.... +..|.-.--+.|..+.|.+.-+..-.. -...+.+.+...+..|+|+.|++
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 46666666666666542 11111 112222233567777777666655432 34567788888888899999998
Q ss_pred HHHHhccCC-CCCCccc--hHHHHHHHHh---hcCchhHHHHHHHHHHhCCCCchHHH-HHHHhhHHhcCChHHHHHHHh
Q 005454 310 LFNEMLSED-VRPDKFS--ISSVVSSCAK---LASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 310 ~~~~m~~~g-~~p~~~t--~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~ 382 (696)
+++.-.... +.++..- -..++.+-.. ..+...|+..-.+..+. .||..-. ..-...|.+.|++.++-.+++
T Consensus 210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 888765432 3333321 1223322211 12344455554444443 3333222 223456778888888888887
Q ss_pred cCCC--CCchHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC
Q 005454 383 MMPT--RNVVSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 383 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 458 (696)
.+-+ |.+..| .+-.+++.|+ -++.-+++... ..++||. .+...+..+-...|++..|..--+... ...|
T Consensus 288 ~aWK~ePHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~p 360 (531)
T COG3898 288 TAWKAEPHPDIA--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAP 360 (531)
T ss_pred HHHhcCCChHHH--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCc
Confidence 7764 333322 2222334443 34444444322 1256664 566666777777888877776655554 4567
Q ss_pred ChHHHHHHHHHHh-ccCCHHHHHHHHHhCCCCCCHHHHH
Q 005454 459 SLDHYACMINLLG-RSSDVDKAVDLIKSLPHKPNSLIWS 496 (696)
Q Consensus 459 ~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~ 496 (696)
....|..|.+.-. ..|+-.++...+-+....|....|.
T Consensus 361 res~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 361 RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 7777777777654 4477777777776544333333343
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.42 E-value=0.64 Score=43.39 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHH
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 547 (696)
+..-|.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 345577889999999999999999987754 46678888999998885443
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.31 E-value=1.8 Score=40.31 Aligned_cols=141 Identities=13% Similarity=0.157 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+-.....+...|++.+|.+.|+++... -|+ ......+..++.+.|++++|...++...+.+.-.|... +....
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~ 84 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYM 84 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHH
Confidence 344455666778888888888887764 222 23455566677777888888888887776654444321 11111
Q ss_pred HHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----------------HH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----------------YI 530 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----------------~~ 530 (696)
.+......... .+ ......+....|...++.+++..|+++.+ -.
T Consensus 85 ~g~~~~~~~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL 145 (203)
T ss_dssp HHHHHHHHHHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 00 00122233455666666666666665532 34
Q ss_pred HHHHHHhhcCChhHHHHHHHHhhh
Q 005454 531 MLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..|.+.|.+..|..-++.+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 578889999999999999998876
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.08 E-value=0.3 Score=41.19 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 419 NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 419 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
.+.|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677777777777777777777777777777777776666666666554
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.08 E-value=3 Score=39.15 Aligned_cols=193 Identities=17% Similarity=0.143 Sum_probs=122.3
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC-----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP-----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
..........+...+....+...+.... ......+......+...+...++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455555666666666666666665543 23344555566666667777777777777766432221 11222222
Q ss_pred -HHhcCCcHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC--HHHHHHHHHHHHh
Q 005454 433 -ACLHADLFERGQNHFDSISAVHGITP----SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN--SLIWSTLLSVCAM 504 (696)
Q Consensus 433 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~--~~~~~~ll~~~~~ 504 (696)
.+...|.++.+...+..... ..| ....+......+...++.++|...+..... .|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677788888887777743 222 233344444446667788888877766432 333 5567777777788
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++.+.|...+...++..|.....+..++..+...|.++++...+.+...
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888887556666777777777778888887776655
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=94.96 E-value=1.6 Score=45.06 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=96.1
Q ss_pred hHH--HHHHHHHHHc-----CChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHh---------cCCcHHHHHHHHHHhH
Q 005454 390 VSW--NSMINGYAQN-----GQDLEALALYDKLLQ-ENLKPDSF-TFVSVLSACL---------HADLFERGQNHFDSIS 451 (696)
Q Consensus 390 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~---------~~g~~~~a~~~~~~m~ 451 (696)
..| ..++.+.... ...+.|+.+|.+.+. +.+.|+.. .|..+..++. ......+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 556 5556655542 234578888998882 23677743 3333222211 1233455666666655
Q ss_pred HhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 452 AVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 452 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
+ --.-|......+..++.-.|+++.|..+|++.. ..||.. +|......+.-.|+.++|.+.+++.++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 223345566666676777777888888887753 356544 666666667778888888888888888888766554
Q ss_pred HH--HHHHHhhcCChhHHHHHHH
Q 005454 530 IM--LSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 530 ~~--l~~~~~~~g~~~~A~~~~~ 550 (696)
+. .++.|+..+ .++|.+++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 43 333455544 566666653
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.73 Score=44.45 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=67.8
Q ss_pred CCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc-C--CHHHHHHHHHhCC-CCC-CHHHH
Q 005454 421 KPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS-S--DVDKAVDLIKSLP-HKP-NSLIW 495 (696)
Q Consensus 421 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g--~~~~A~~~~~~~~-~~p-~~~~~ 495 (696)
+-|...|..|..+|...|+++.|..-|....+- -.++.+.+..+..++... | .-.++.++|+++. ..| |..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 334566666777777777777777777666542 233445555555554332 2 3356677777643 344 44566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
..|...+...|++.+|...++.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66777888899999999999999998876543
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.93 E-value=0.67 Score=44.53 Aligned_cols=120 Identities=11% Similarity=0.119 Sum_probs=85.4
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWST---LLSVCAMKGDIK 509 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---ll~~~~~~g~~~ 509 (696)
.....|++.+|...|...... .+-+...--.|+..|...|+.++|..++..++.+-...-|.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 456778888888888888763 233456667788999999999999999999887543333333 222233333333
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+..+
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 234456678999999999999999999999999988777554
No 233
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.89 E-value=0.43 Score=40.74 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=56.5
Q ss_pred HhccCCHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch---HHHHHHHHhhcCC
Q 005454 470 LGRSSDVDKAVDLIKSLPH----KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP---YIMLSNMYAACGR 541 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 541 (696)
..+.|++++|.+.|+.+.. .| ...+-..|+.++.+.|+++.|...+++.+++.|.++.+ +...+-++..+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 3456777777777766532 22 23355678888999999999999999999999887754 3344444444443
Q ss_pred ---------------hhHHHHHHHHhhh
Q 005454 542 ---------------WEDVASIRSSMKS 554 (696)
Q Consensus 542 ---------------~~~A~~~~~~m~~ 554 (696)
..+|..-|+.+.+
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5566666666544
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.23 Score=49.62 Aligned_cols=137 Identities=12% Similarity=0.029 Sum_probs=95.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.+.|.+.|++..|...|++.+.. |. +...-+.++..... ..-...+..+.-.|.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677788888888888776551 00 00111111111111 1223456667778889999
Q ss_pred HHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH-HHHHHHh
Q 005454 476 VDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV-ASIRSSM 552 (696)
Q Consensus 476 ~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m 552 (696)
+.+|++.-+... . ++|.-..--=..+|...|+++.|...|+++++++|.|-.+-..|+.+-.+..+..+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877643 3 356666666778899999999999999999999999999999999888887776655 7788888
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
-.
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 54
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.76 E-value=0.18 Score=51.71 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
...+..+..+|...|++++|+..|++ +...|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45666667777777777777777765 4445553 24777777777777777777777777775
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.73 E-value=0.25 Score=49.17 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcc----hHHHHHHHHHccCChHHHHHHHHH
Q 005454 130 GFANKGFSREALQVFSRMQKDRFEPTDY----THVSALNACAQLLDLRRGKQIHGK 181 (696)
Q Consensus 130 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~ 181 (696)
-+++.|+.+..+.+|+...+.|. -|.. .|..|-++|.-.+|++.|.++|..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 36788888888888888887762 2333 344455566666778888777653
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.67 E-value=0.32 Score=42.58 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH----hhCCCCChHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA----VHGITPSLDH 462 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 462 (696)
...++..+...|++++|+.+.+.+.... +-|...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3345555666777777777777776642 33456677777777777777777777766532 3567776554
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.47 E-value=2.6 Score=36.52 Aligned_cols=123 Identities=13% Similarity=0.097 Sum_probs=59.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchH
Q 005454 161 SALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 161 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 240 (696)
.++..+...+.......+++.+.+.+ ..+....|.++..|++.+ .......+.. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444455555555555555554 245556666666666543 2333444442 1223333445555555565655
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhccCCChhHHHHHHHHH
Q 005454 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQT-GRIDDAGRLFHVIKEKDNVCWTTMIVGY 298 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~ 298 (696)
+.-++.++.. +...+..+... ++.+.|.+++.+. .+...|..++..+
T Consensus 88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~ 135 (140)
T smart00299 88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKAL 135 (140)
T ss_pred HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 5555554421 11122222222 5555665555542 2344555555443
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.39 E-value=2.9 Score=42.43 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=19.0
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (696)
.|+.++|++++..+......+++.|+..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 566666666666654444555555555555443
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.32 E-value=4.6 Score=37.74 Aligned_cols=195 Identities=14% Similarity=0.095 Sum_probs=101.0
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCC--chHHHHHHHHHHHcCCh
Q 005454 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRN--VVSWNSMINGYAQNGQD 405 (696)
Q Consensus 328 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~~ 405 (696)
....++....+++.+...+..+.+. .+.+...|. ....++.|.-+.+++.+-+ +..|+--...|..+|.+
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gsp 107 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSP 107 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCc
Confidence 3344555666666666655555431 111211111 1122333333444443322 22445556677777777
Q ss_pred HHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhccCCHHHH
Q 005454 406 LEALALYDKLLQ--ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG----ITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 406 ~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
+-|-..+++.-+ .++.|+ +|++++++...... ...-.+.|......|.+..++++|
T Consensus 108 dtAAmaleKAak~lenv~Pd------------------~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 108 DTAAMALEKAAKALENVKPD------------------DALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred chHHHHHHHHHHHhhcCCHH------------------HHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 766665555433 223443 33333333322100 011124455566777888888888
Q ss_pred HHHHHhCCC-------CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHhhcCChhHHHH
Q 005454 480 VDLIKSLPH-------KPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFELE----PINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 480 ~~~~~~~~~-------~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
-..|.+-.. -|+. ..+-+.+-.+....|+..|++.++.--+.. |++..+...|+.+| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 766654321 1333 134445555666678888888888765543 56666666776665 4577777776
Q ss_pred HH
Q 005454 548 IR 549 (696)
Q Consensus 548 ~~ 549 (696)
+.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 65
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.31 E-value=4.4 Score=46.48 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.6
Q ss_pred CCCcchHHHHHHHHHhcC--CHHHHHHHHHhcc
Q 005454 254 NPDEVTVSNILGACFQTG--RIDDAGRLFHVIK 284 (696)
Q Consensus 254 ~p~~~t~~~ll~~~~~~g--~~~~A~~~~~~~~ 284 (696)
.|+ .-...+|.+|.+.+ .+++|+....++.
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 34445666666665 5666665555544
No 242
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=3.5 Score=39.80 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=100.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSD 475 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 475 (696)
.......|+..+|..+|....+.. +-+...-..+..++...|+++.|..++..+-.+ .-.........-+..+.+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 345567788888888888887742 223455666777888889999998888776432 111111222334566666666
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhH-HHHHHHH
Q 005454 476 VDKAVDLIKSLPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPYIMLSNMYAACGRWED-VASIRSS 551 (696)
Q Consensus 476 ~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~ 551 (696)
..+..++-.+.-..| |...-..|...+...|+.+.|...+=.++..+ -.+..+-..|..++...|.-|. +.+.+++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 666666666665566 55566677788888899988888777776654 4566677777777777774443 3333443
Q ss_pred h
Q 005454 552 M 552 (696)
Q Consensus 552 m 552 (696)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.20 E-value=2.5 Score=43.76 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHh
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACLHADLFERGQNHFDSI 450 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m 450 (696)
+..+.-+.|+.++|++.|++|.+.. ++ +......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444445566666666666665432 11 1223444555555555555555555443
No 244
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.11 E-value=1.1 Score=46.32 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=88.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH---
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD--- 477 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--- 477 (696)
+..+...-+++-++.++ +.||-.+...++ +-..+..+.++.+++++..+... . .|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhccc
Confidence 34555555666666666 566654433333 23345567888888888765310 0 011111000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
...+.+.+-..+|-..+-..|..++++.|+.++|.+.++.+++..|. +......|+..|...+++.++..++.+--+-
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111112233444456777788899999999999999887765 4557888999999999999999999887554
Q ss_pred CCcCCCc
Q 005454 556 NVKKFAA 562 (696)
Q Consensus 556 ~~~~~~~ 562 (696)
...+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 4444433
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.10 E-value=2.5 Score=45.17 Aligned_cols=159 Identities=10% Similarity=0.101 Sum_probs=98.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCChHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQEN-LKPDS-----FTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
..++....-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.+.++++.+.+.| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 334455555566666666666654422 11111 123333332222 456777888888887643 66555
Q ss_pred HHHH-HHHHhccCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH-HHHH
Q 005454 463 YACM-INLLGRSSDVDKAVDLIKSLPH-K-----PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI-MLSN 534 (696)
Q Consensus 463 ~~~l-i~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~~ 534 (696)
|... ...+...|++++|.+.|++... + -....+--+...+....++++|...+.++.+...-+...|. ..+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4333 4556678888888888886432 1 12334445556677889999999999999987765555544 5566
Q ss_pred HHhhcCCh-------hHHHHHHHHhhh
Q 005454 535 MYAACGRW-------EDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~-------~~A~~~~~~m~~ 554 (696)
+|...|+. ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 67788888 888888887754
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.10 E-value=0.62 Score=48.92 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=86.1
Q ss_pred HHHHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 398 GYAQNGQDLEALALYD-KLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
.....|+++++.++.+ .-.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 3445677887766664 11111122 33456677777788888888876543332 24667789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 477 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+.|.++.+... +...|..|.......|+++.|++.+++.- -+..|+-+|...|+-+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99988877764 77799999999999999999999988754 36678888888898887777776666655
No 247
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.10 E-value=0.13 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888888864
No 248
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.10 E-value=0.097 Score=32.28 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888885
No 249
>PRK11906 transcriptional regulator; Provisional
Probab=94.09 E-value=0.7 Score=47.55 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHh---------ccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 005454 439 LFERGQNHFDSISAVHGITPSL-DHYACMINLLG---------RSSDVDKAVDLIKSL-PH-KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 439 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g 506 (696)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. .. .-|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4567888898888544667763 44544443332 122345566666553 23 346777777777778888
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.+.|...|+++..++|+.+.+|...+....-+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999987544
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.85 E-value=0.66 Score=43.92 Aligned_cols=101 Identities=11% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHhcCC--CCCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----------
Q 005454 376 DAWTVFNMMP--TRNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD---------- 438 (696)
Q Consensus 376 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 438 (696)
..+..|..+. ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456666666 67778888888887654 556666777889999999999999999998875533
Q ss_pred ------cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH
Q 005454 439 ------LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477 (696)
Q Consensus 439 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (696)
+-+=++.++++|.. +|+.||-++-..+++++++.+..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 23457899999986 799999999999999999998653
No 251
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.85 E-value=1.9 Score=45.41 Aligned_cols=152 Identities=12% Similarity=0.064 Sum_probs=93.0
Q ss_pred cCCCHHHHHHHHH--hcC-CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 203 KGGEIDKARWLFD--RMN-NRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 203 ~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
-.|+++++.+... ++. .-+..-.+.++.-+-+.|.++.|+++..+-.. -.....++|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 4567777544443 111 11234477788888888888888887544221 23445688999999888
Q ss_pred HHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
.+++. +...|..|.....++|+++-|.+.|.+... +..++-.|...|+.+.-.++...+...|-
T Consensus 341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~----- 404 (443)
T PF04053_consen 341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD----- 404 (443)
T ss_dssp CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----
Confidence 77665 566899999999999999999999988653 55666677777887777777766666553
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
+|....++...|+.++..+++.+
T Consensus 405 -~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 -INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334444555666665555543
No 252
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.81 E-value=7.5 Score=38.34 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC-C--CchHHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-R--NVVSWNSMINGY---AQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
.++-.-+....+.++.+.+.+++..|.. . ....+..++..+ .. .....|...++.++...+.|..
T Consensus 122 ~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 122 EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 3333334444445666666666665542 1 122333333333 22 2233455555555444344443
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.68 E-value=6.1 Score=36.96 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=123.4
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHHh-CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCc-hHHHHHHH-HHH
Q 005454 326 ISSVVSSCAKLASLYHGQVVHGKAVVL-GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNV-VSWNSMIN-GYA 400 (696)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~ 400 (696)
+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ........ .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333344444444455444444444432 2223444455555566666667777777665553 211 22333333 678
Q ss_pred HcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKP----DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 475 (696)
..|+.+.|...|.+... ..| ....+......+...+..+.+...+..... .... ....+..+...+...+.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 88899999999988855 333 233444444446677888999998888875 2333 46777888888888889
Q ss_pred HHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 476 VDKAVDLIKSLPH-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 476 ~~~A~~~~~~~~~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+++|...+..... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999888876533 444 445555556666677899999999999998886
No 254
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.61 E-value=0.62 Score=45.73 Aligned_cols=162 Identities=12% Similarity=0.110 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC----ChHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDS---FTFVSVLSACLHADLFERGQNHFDSISAVHGITP----SLDH 462 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~ 462 (696)
+|-.+..++-+.-++.+++.+-..-.. .|..|.. ....++..+....+.++++.+.|+...+--.-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 445555555555555555555444332 2223311 2223344566666678888888887764211111 2357
Q ss_pred HHHHHHHHhccCCHHHHHHHHH-------hCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCc-
Q 005454 463 YACMINLLGRSSDVDKAVDLIK-------SLPHKPNS-----LIWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAG- 527 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~-------~~~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~- 527 (696)
+..|...|++..++++|.-+.. ....+.-. .+.-.+.-+++..|....|.+..+++.++. ..|..
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7788888888888887755443 33322111 233344557788888888888887775543 33333
Q ss_pred ---hHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 528 ---PYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 528 ---~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
....++++|...|+.|.|..-++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3456888888888888777766543
No 255
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.54 E-value=12 Score=39.88 Aligned_cols=392 Identities=11% Similarity=0.039 Sum_probs=204.6
Q ss_pred HHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHH
Q 005454 24 EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAH 100 (696)
Q Consensus 24 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~ 100 (696)
..+..|+..-. ...+...+...+...+..-|-....|......=.+.|..+.+.++|++-.. ..+..|.......
T Consensus 46 ~~wt~li~~~~--~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQEND--SIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccC--chhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555565444 334445555555555544332224555555555678889999999998765 3666676666655
Q ss_pred Hc-cCChhHHHHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHH---c--
Q 005454 101 AR-SGSVQDLRALFDKMPI------RDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA---Q-- 168 (696)
Q Consensus 101 ~~-~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~---~-- 168 (696)
.. .|+.+..++.|+.... .....|...|.--..++++.....+|++..+. |. ..|+....-+. +
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~l~~~ 199 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQLLNQN 199 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHHHhcC
Confidence 43 4677777888877653 34567888888888888999999999888764 21 11222222111 1
Q ss_pred ----cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC-HHHHHHHHHhcCCCCh---hHH-------HHHHHHHH
Q 005454 169 ----LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE-IDKARWLFDRMNNRNL---VSW-------NLMISGYL 233 (696)
Q Consensus 169 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~---~~~-------~~li~~~~ 233 (696)
....++..++-....... .-...+. .+.-....+....+.. ... +..-..+-
T Consensus 200 ~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~ 266 (577)
T KOG1258|consen 200 EEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQ 266 (577)
T ss_pred ChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 112233222222221100 0000011 1111111111111110 001 11111222
Q ss_pred hCCCchHHHHHHHHHHHc---CCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC
Q 005454 234 KNGQPKKCIDLFQEMQLL---GLNP----DEVTVSNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK 303 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~ 303 (696)
..-...+..-.|+.-... .++| +..+|..-+.--.+.|+.+...-+|++..-+- ...|--.+.-....|+
T Consensus 267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc
Confidence 222222333333332222 1222 33456666666677888888888888776542 2345555555555688
Q ss_pred hhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH---HH
Q 005454 304 EEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW---TV 380 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~---~~ 380 (696)
.+-|..++....+--++-.+.+-..-..-+-..|+...|..+++.+...- +.-..+-.--+.+..+.|+.+.+. .+
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 88888777776654333222222222222345678899999998887765 222333334456667778888777 44
Q ss_pred HhcCCC--CCchHHHHHHHHH-----HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 381 FNMMPT--RNVVSWNSMINGY-----AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 381 ~~~~~~--~~~~~~~~li~~~-----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+....+ .+....+.+..-+ .-.++.+.|..++.++.+. ++++..-|..++.-+..
T Consensus 426 ~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 426 YSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred HHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 443331 2222223332222 2357788888888888774 35555666666655443
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.11 E-value=3.5 Score=35.68 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
..++..+...+.......+++.+.+.+. .+....+.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3445555555555555555555555442 344455555555544
No 257
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.09 E-value=0.57 Score=44.35 Aligned_cols=99 Identities=13% Similarity=0.095 Sum_probs=64.1
Q ss_pred HHHHHHhcCC--CCCcchHHHHHHHHHhC-----CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc-----------
Q 005454 108 DLRALFDKMP--IRDSVSYNTAIAGFANK-----GFSREALQVFSRMQKDRFEPTDYTHVSALNACAQL----------- 169 (696)
Q Consensus 108 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----------- 169 (696)
..++.|...+ ++|-.+|-+++..|... +..+---..++.|.+.|+.-|..+|..||+.+-+-
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3445565555 55666666666655433 44454555567777777777777787777765332
Q ss_pred -----CChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCC
Q 005454 170 -----LDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGE 206 (696)
Q Consensus 170 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 206 (696)
.+-+-+..++++|..+|+.||-.+-..|++++.+.|-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1234566777778888888887777777777766664
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.08 E-value=0.95 Score=38.22 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVC 502 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 502 (696)
|..++..++.++++.|+++....+.+.. +|+.++...- .+. +-..-+..|+..+..+++.++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4667888888888888888888877654 3554432110 000 111123347777777777777
Q ss_pred HhcCChHHHHHHHHHHHhcCC
Q 005454 503 AMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p 523 (696)
...|++..|.++.+...+..|
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcC
Confidence 777777777777777766554
No 259
>PRK15331 chaperone protein SicA; Provisional
Probab=92.63 E-value=2.2 Score=37.51 Aligned_cols=83 Identities=17% Similarity=0.045 Sum_probs=40.1
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 445 (696)
...|++++|..+|+-+. .-|..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 34555555555555433 1234445555555555555555555555544322 1222333344444555555555555
Q ss_pred HHHHhHH
Q 005454 446 HFDSISA 452 (696)
Q Consensus 446 ~~~~m~~ 452 (696)
.|+....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 5554443
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.62 E-value=1.1 Score=43.68 Aligned_cols=159 Identities=17% Similarity=0.073 Sum_probs=115.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH----HHHHHhccCCH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC----MINLLGRSSDV 476 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 476 (696)
-.|...+|...++++++. .+.|...+.-.=.+|...|+...-...++++.. ...|+...|.. +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888999999999885 566777777777899999999988888888875 44666644443 34455689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 477 DKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI----NAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 477 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
++|++.-++. ..+| |.-.-.++.......|+..++.+..++--..=.. -...|-..+-.|...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998774 4443 5556677888888899999998886654322111 12346677777888899999999998
Q ss_pred HhhhCCCcCCCc
Q 005454 551 SMKSKNVKKFAA 562 (696)
Q Consensus 551 ~m~~~~~~~~~~ 562 (696)
+=.-+.+.+..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 765444444443
No 261
>PRK09687 putative lyase; Provisional
Probab=92.56 E-value=11 Score=36.98 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=59.9
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-CchHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNG-QPKKCIDLFQEMQLLGLNPDEVTVSNILGAC 267 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 267 (696)
++..+--..+.++.+.|+.+....+..-+..+|...-...+.++.+.+ ....+...+..+.. .+|...-...+.++
T Consensus 140 ~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL 216 (280)
T PRK09687 140 KSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL 216 (280)
T ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence 355555666666666666433333333333444444444444444432 13345555555543 34555555556666
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
++.|+......+.+.+..++ .....+.++...|.. +|+..+.++.+
T Consensus 217 g~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 217 ALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 66666443333334433333 223445555555553 45555555554
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.51 E-value=25 Score=40.77 Aligned_cols=152 Identities=11% Similarity=0.093 Sum_probs=71.0
Q ss_pred CChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHH----ccCChHHHHHHH
Q 005454 104 GSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACA----QLLDLRRGKQIH 179 (696)
Q Consensus 104 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~ 179 (696)
+++++|+.-+.++. ...|.-.+..--++|.+.+|+.++ .|+...+..+..+|+ ....++.|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444444444432 223444444444555555555543 566666655555443 334444444443
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-ChhH--HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-NLVS--WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
+..-+. ..-+.+|..+|++.+|+.+-.++... |... -..|+.-+...+++-+|-++..+....
T Consensus 963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----- 1028 (1265)
T KOG1920|consen 963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----- 1028 (1265)
T ss_pred HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----
Confidence 332111 12344555555555555555555442 2221 145556666666666666665554321
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhc
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVI 283 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~ 283 (696)
..-.+..|++...+++|.++-...
T Consensus 1029 ---~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred ---HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 112223344555555555544333
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.36 E-value=2.1 Score=45.72 Aligned_cols=26 Identities=12% Similarity=-0.084 Sum_probs=14.3
Q ss_pred hHHHHHHHHhhcCchhHHHHHHHHHH
Q 005454 326 ISSVVSSCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 326 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 351 (696)
+..++....-.||-+.|.+.+....+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~ 216 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASK 216 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence 34445555555666666666655544
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.29 E-value=0.74 Score=41.32 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=69.8
Q ss_pred HHHhccCCHHHHHHHHHhC----CCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 468 NLLGRSSDVDKAVDLIKSL----PHK---PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~----~~~---p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
+-+.+.|++++|..-|... +.. -..+.|..-..+..+.+..+.|.....++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4456677777776666442 111 123456666677788999999999999999999998888888899999999
Q ss_pred ChhHHHHHHHHhhhCCC
Q 005454 541 RWEDVASIRSSMKSKNV 557 (696)
Q Consensus 541 ~~~~A~~~~~~m~~~~~ 557 (696)
++++|+.-++++.+...
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 99999999999987543
No 265
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.27 E-value=4.4 Score=37.12 Aligned_cols=180 Identities=16% Similarity=0.146 Sum_probs=97.6
Q ss_pred hcCChHHHHHHHhcCC--CC-CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMP--TR-NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 445 (696)
..|-++-|+--|.... .| -+..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++.-.|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHH
Confidence 3344444444444322 23 345677777777888888888888888877 34432 222222223445677887777
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 446 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
-|...-+.-.-.|-...|-.++. +.-+..+|..-+.+--.+.|..-|...+-.+.-- .+. -+.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KIS-EETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hcc-HHHHHHHHHhhccch
Confidence 66555432122232333332222 2335566654443222234555565555444321 111 122333333322222
Q ss_pred -------CchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 526 -------AGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 526 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.++|..|+.-|...|+.++|..+|+.....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999776544
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.27 E-value=0.88 Score=43.32 Aligned_cols=80 Identities=18% Similarity=0.213 Sum_probs=37.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKPDS----FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~ 475 (696)
+.|++.+|...|...++.. |+. ..+--|..++...|++++|..+|..+.++++-.|.. +.+--|.....+.|+
T Consensus 153 ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 4455666666666666532 221 233345555555566666666665555544333332 333333333333333
Q ss_pred HHHHHHH
Q 005454 476 VDKAVDL 482 (696)
Q Consensus 476 ~~~A~~~ 482 (696)
.++|...
T Consensus 231 ~d~A~at 237 (262)
T COG1729 231 TDEACAT 237 (262)
T ss_pred HHHHHHH
Confidence 3333333
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.25 E-value=1.1 Score=42.77 Aligned_cols=90 Identities=16% Similarity=0.240 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHH
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSL----PH---KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIM 531 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~----~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~ 531 (696)
.|+.-++.| ..|++.+|...|... |. .||..- -|..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 455444433 455576666666543 22 133333 36677778888888888888877766554 455777
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|+.+..+.|+.++|..+++++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888888877765
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.13 E-value=4 Score=34.99 Aligned_cols=114 Identities=14% Similarity=0.086 Sum_probs=53.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPD---SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
....+.|++++|.+.|+.+...- +.. ...-..++.++.+.+++++|...+++.++.+.-.|+ ..|.....++..-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 33445566666666666655531 111 234444555555666666666666665554333333 2222222222211
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 474 SDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 474 g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
...+.+ +..+. ..=+-.+....|...|++++..-|++..
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 111111 11110 0001112356788888899998897653
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.01 E-value=11 Score=35.88 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=34.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPDS---FTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
+..-|.+.|.+-.|..-+++|++. .+-.. ..+-.+..+|...|..++|...-.-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 345677778888888888887775 22222 234445556666666666666554443
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.94 E-value=0.27 Score=30.85 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=20.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788899999999999999988743
No 271
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.59 E-value=4.1 Score=39.81 Aligned_cols=180 Identities=10% Similarity=0.115 Sum_probs=116.2
Q ss_pred HhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHH--HHHhcCCcHH
Q 005454 369 CKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT--FVSVL--SACLHADLFE 441 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll--~a~~~~g~~~ 441 (696)
-..|+..+|...++++. +.|..+|+--=.++...|+...-...+++.+.. ..||... |..=+ .++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34677788777777766 357888888889999999999999999998764 2455533 33222 3456789999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCChHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-------SLIWSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~ 514 (696)
+|++.-++..+.+ +.|.-.-.+....+.-.|+..++.+++.+-...-+ ..-|.. .-.+...+.++.|+.+
T Consensus 193 dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHH
Confidence 9999877766421 23344555677888889999999999987653211 112222 1223455889999999
Q ss_pred HHHH--HhcCCCCCch---HHHHHHHHhhcCChhHHHHHHHHh
Q 005454 515 ARHL--FELEPINAGP---YIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 515 ~~~~--~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|++= .+++.+|..+ |.-+-.+..+.-.|.+-.++-+.+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l 312 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSL 312 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhh
Confidence 9754 3455555533 333444445555555544444333
No 272
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.16 E-value=0.58 Score=38.77 Aligned_cols=55 Identities=16% Similarity=0.058 Sum_probs=51.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
-+....|+.+.|.+.|.+.+.+-|.++++|+.-+.+|.-+|+.++|+.-+++..+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999988765
No 273
>PRK09687 putative lyase; Provisional
Probab=90.95 E-value=17 Score=35.75 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=7.8
Q ss_pred chHHHHHHHhhHHhcCC
Q 005454 357 DLLVSSALIDMYCKCGV 373 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~ 373 (696)
+..+-...+.++.+.|+
T Consensus 141 ~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 141 STNVRFAVAFALSVIND 157 (280)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 33444444444444444
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.90 E-value=9.3 Score=42.26 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=49.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.|++++|...|-+-+.. +.|.. ++.-+..+....+-..+++.+.+. |+ .+..+-..|+.+|.+.++.++-.
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq~IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQRIKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHHHHHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHH
Confidence 445555555555444332 22321 233334444444444555555442 22 23444455555666666665555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (696)
++++.....--..-....+..|++.+-.++|..+..+
T Consensus 452 efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 452 EFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 5555543110011123444455555555555554443
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.55 E-value=0.45 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888888877773
No 276
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.53 E-value=21 Score=39.65 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=13.2
Q ss_pred HhhcCChhHHHHHHHHh
Q 005454 536 YAACGRWEDVASIRSSM 552 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m 552 (696)
+...|+|++|++.++++
T Consensus 515 ~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHTT-HHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 67889999999888765
No 277
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.96 E-value=14 Score=32.94 Aligned_cols=134 Identities=15% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC--CHHHHHHHHHhCC
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS--DVDKAVDLIKSLP 487 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 487 (696)
+..+.+.+.+++|+...+..+++.+.+.|.+..-.+++ + +++-||.....+.+-.++... -.+-|.++++++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 44455555666677667777777777766655544433 2 355555554444433332211 1344555555554
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 488 HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 488 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.. +..++..+...|++-+|.+..++....+. .....+..+-...++..--..+++-..+++
T Consensus 90 ~~-----~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 TA-----YEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hh-----HHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22 23444555566777666666655433221 122334444444444444444444443433
No 278
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.73 E-value=30 Score=38.49 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=14.8
Q ss_pred HhccCCHHHHHHHHHhCCCCC
Q 005454 470 LGRSSDVDKAVDLIKSLPHKP 490 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~~p 490 (696)
+...|++++|++.+++++.-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 467888999999998887766
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.47 E-value=1.5 Score=38.34 Aligned_cols=53 Identities=17% Similarity=0.215 Sum_probs=34.5
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..++.+.++.++..+.-+.|..+..-..-++++...|+|.+|.++++.+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 45566666666666666666666666666666666666666666666665443
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.26 E-value=0.63 Score=29.13 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
+|..|...|...|++++|..++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886544
No 281
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.25 E-value=12 Score=31.42 Aligned_cols=139 Identities=10% Similarity=0.104 Sum_probs=73.1
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHH
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAW 378 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 378 (696)
.-.|..++..++..+.... .+..-++.++--.....+-+...++++. .|--.|. ..||++....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~Lds---IGkiFDi----------s~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDS---IGKIFDI----------SKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHH---HGGGS-G----------GG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHH---HhhhcCc----------hhhcchHHHH
Confidence 4457777777777776643 2333344444333333332222222222 2221121 3455555555
Q ss_pred HHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 379 TVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 379 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
..+-.+.. +......-+..+...|+-+.-.+++.++.+. -.|++.....+..||.+.|+..++.+++..+-+. |+
T Consensus 77 ~C~~~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 77 ECYAKRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 55444332 2234455577788888888888888888763 3778888888888999999999998888888763 54
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.94 E-value=0.69 Score=44.97 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=78.9
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~ 507 (696)
.+-|.+.|.+++|+..|.... .+.| +..++..-..+|.+..++..|+.--..... +.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999998776 3456 778888888999999999888765544321 1112245555555556788
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
..+|.+-++.+++++|.+.+ |-..|.+.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 99999999999999998644 4444555555555544443
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.79 E-value=1.7 Score=37.26 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=45.7
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
..++.+.++.++..+.-+.|+.+..-..-+.++...|+|++|.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 378888888888888888898888888888889999999999999988876553
No 284
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.56 E-value=1.5 Score=28.91 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
+|..+...|...|++++|.++|++.++. .|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 4666777777777777777777777773 4554
No 285
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.45 E-value=0.16 Score=44.41 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=51.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHH
Q 005454 162 ALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241 (696)
Q Consensus 162 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (696)
++..+.+.+.++....+++.+.+.+...+....+.|+..|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666667777777666566788888888888888777777777764332 3334555666666666666
Q ss_pred HHHHH
Q 005454 242 IDLFQ 246 (696)
Q Consensus 242 ~~l~~ 246 (696)
.-++.
T Consensus 90 ~~Ly~ 94 (143)
T PF00637_consen 90 VYLYS 94 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.40 E-value=19 Score=36.87 Aligned_cols=68 Identities=15% Similarity=0.249 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP----INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
....+|..+...+++.|+++.|...+.++...++ ..+.....-+..+...|+.++|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3455899999999999999999999999988662 2466777889999999999999999988876333
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=88.19 E-value=5.3 Score=33.61 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhc---CChHHHHHHHHHHHh-cCCCCC-chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMK---GDIKHGEMAARHLFE-LEPINA-GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+--.+..++.+. .|++++..+++.+++ -.|... .....|+-.+++.|+++.++++.+...+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444433 345566777777765 223322 2334556667777777777777776655
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=49 Score=36.69 Aligned_cols=121 Identities=15% Similarity=0.148 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 005454 192 FVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271 (696)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 271 (696)
.++..+|+.+...|++++|-...-.|...+..-|.--+..+...++......++ ....-..+...|-.+|..+.. .
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~ 468 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-S 468 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCCcccCchHHHHHHHHHHH-H
Confidence 445566666777777777777777776666666666666666655554433221 111111223334444444333 1
Q ss_pred CHHHHHHH--------------HHhccC------CChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 272 RIDDAGRL--------------FHVIKE------KDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 272 ~~~~A~~~--------------~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
+...-.++ .+..+. .+...-..|+..|...+++..|+.++-..++
T Consensus 469 ~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 469 DVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111111 111110 1222234477888888888888888877653
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.72 E-value=20 Score=31.95 Aligned_cols=39 Identities=13% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (696)
+...+.+.+++++..++..+++.+.+.|++..-..++.-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~ 54 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY 54 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 344445556666666666666666666666555555443
No 290
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.56 E-value=40 Score=35.38 Aligned_cols=155 Identities=14% Similarity=0.117 Sum_probs=81.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
.-+++..+.++..+.-...+..+|+.-| .+...|..++..|... ..+.-..+|.++++..+. |+.....|++.|.+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 3445555666666666666666666532 3445566666666655 445556666666666654 56666667776666
Q ss_pred cCChHHHHHHHhcCCC------CCc---hHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhcCCcH
Q 005454 371 CGVTDDAWTVFNMMPT------RNV---VSWNSMINGYAQNGQDLEALALYDKLLQ-ENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
++...+...|.++.. .+. ..|..++..- ..+.+..+.+...... .|..--.+.+.-+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 666777666665431 011 1333333211 1233444444444433 22222234444444555566666
Q ss_pred HHHHHHHHHhHH
Q 005454 441 ERGQNHFDSISA 452 (696)
Q Consensus 441 ~~a~~~~~~m~~ 452 (696)
++|++++..+.+
T Consensus 222 ~eai~Ilk~il~ 233 (711)
T COG1747 222 TEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHhh
Confidence 666666665554
No 291
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.31 E-value=2.5 Score=41.01 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..++..+...|+.+.+...++++++.+|-+-..|..+..+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566777788888888889999999999998888899999999999999999998888865
No 292
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.30 E-value=1.3 Score=27.13 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777778888888888877776 4454
No 293
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.01 E-value=29 Score=33.09 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAG---PYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..-|.+.|.+.-|..-++.+++--|+.+. ++..+..+|...|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 34577899999999999999998776554 466778889999999999998876654
No 294
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.93 E-value=39 Score=34.52 Aligned_cols=148 Identities=9% Similarity=0.001 Sum_probs=71.9
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC--hHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP---DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS--LDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 462 (696)
...+|..++..+.+.|+++-|...+.++...+..+ +......-....-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 44567777777777888888887777776643111 2222333334444567777777777666551 11111 111
Q ss_pred HHHHHHHHhccCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 463 YACMINLLGRSSDVDKAVDL-IKSLPHKPNSLIWSTLLSVCAM------KGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
...+...+.. ..+..... ........-..++..+..-+.. .++.+.+...++.+.++.|....+|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 0000000001122222222222 3778888999999999999887777777666
Q ss_pred Hhh
Q 005454 536 YAA 538 (696)
Q Consensus 536 ~~~ 538 (696)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 295
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.78 E-value=3.9 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCC
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGF 604 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~ 604 (696)
...++-++.+.|++++|.+..+.+.+ ..|...+....-..+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45678889999999999999998876 346666666666667777877763
No 296
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.72 E-value=16 Score=36.29 Aligned_cols=161 Identities=10% Similarity=0.049 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc-CCCCCCc---cchHHHHHHHHhhcCchhHHHHHHHHHHhCCC-----CchHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLS-EDVRPDK---FSISSVVSSCAKLASLYHGQVVHGKAVVLGVD-----DDLLV 360 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~ 360 (696)
.|..+..++-+--++.+++.+-..-.. .|..|.. ....++-.+....+.++.+.+.|+.+.+.... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 455566666666666666665544332 2233311 22334555666667777777777776653221 23456
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC-------CCCch------HHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP-------TRNVV------SWNSMINGYAQNGQDLEALALYDKLLQ----ENLKPD 423 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 423 (696)
+.+|...|.+..++++|.-...+.. -.|.. +...|.-++...|....|.+.-++..+ .|-.|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 7777777877777777654433221 12222 122234455556666555555555332 231211
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHh
Q 005454 424 -SFTFVSVLSACLHADLFERGQNHFDSI 450 (696)
Q Consensus 424 -~~t~~~ll~a~~~~g~~~~a~~~~~~m 450 (696)
......+...|...|+.+.|+.-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122333444455566666655555544
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.32 E-value=1.1 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhcCChhHHHHHHH
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888765
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=85.15 E-value=2.8 Score=40.94 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=62.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 474 (696)
..-|.++|.+++|+..|...+. +.| |.+++..-..+|.+...+..|..-......-. ..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 5779999999999999998877 567 89999999999999988888776665554310 011223333333334445
Q ss_pred CHHHHHHHHHhC-CCCCCHH
Q 005454 475 DVDKAVDLIKSL-PHKPNSL 493 (696)
Q Consensus 475 ~~~~A~~~~~~~-~~~p~~~ 493 (696)
...+|.+-.+.. ..+|+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH
Confidence 566665555542 3356633
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.11 E-value=34 Score=32.24 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV 373 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 373 (696)
-..+|....++++|..-+.+..+. ...|...| ....+ .+.+..+.+++.+. .--+..++--..+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hAAKa------yEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HAAKA------YEQAAMLAKELSKL--SEVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HHHHH------HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCC
Confidence 344566666777776665555421 11111111 11111 22333333333321 1123456667778889998
Q ss_pred hHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 374 TDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENL--KPDS---FTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 374 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~---~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
.+.|-..+++.-+ ...+-++++|+++|++...-=. .-+. .-+..+-..+.+...+++|-..|.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 8877766654321 2234567777777776543100 1111 223333445556666777665554
Q ss_pred HhHHh---hCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHh---CCC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 449 SISAV---HGITPSL-DHYACMINLLGRSSDVDKAVDLIKS---LPH---KPNSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 449 ~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~---~~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
+-... ..--|+. ..|-..|-.+.-..++..|...++. ++. ..+..+...|+.+| ..||.++...++
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 32110 0111221 3355556666777899999999987 433 23566888888886 567887776664
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.74 E-value=13 Score=33.74 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...+++..+..+..++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444555555555555555555544333332 233444455555555555555544443
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=84.69 E-value=9.2 Score=37.18 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.++..++..+..+|+.+.+...+++... -+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455566666666666666666655542 2444566666666666666666666665544
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.68 E-value=6.3 Score=30.96 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=48.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+.++.+ ...+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 44456677777777788999999999999999999999999999988753 3334456666554
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.24 E-value=5.1 Score=31.79 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+- .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~--~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC--GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--cChHHHHHHHHH
Confidence 566667777777889999999999999999999999999999988643 344447776655
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.18 E-value=18 Score=32.06 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 195 NALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
.+|.-+-.+.|++..|.+.|..+..
T Consensus 171 EALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHHHc
Confidence 3444444455555555555555443
No 305
>PRK10941 hypothetical protein; Provisional
Probab=83.70 E-value=7.3 Score=37.87 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++...+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4566777889999999999999999999999999999999999999999999998877765
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.67 E-value=17 Score=38.78 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=95.3
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 203 KGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
-.|+++.|..++..+++ ..-+.++..+.+.|..++|+++ .+|...- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 35778888777766653 2345566777778888888765 2332221 1224577888888877654
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHH
Q 005454 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSS 362 (696)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (696)
. .+..-|..|..+....+++..|.+-|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 663 ~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N 725 (794)
T KOG0276|consen 663 A--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------N 725 (794)
T ss_pred h--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------c
Confidence 3 4567799999999999999999998887664 455666666677766555555555554432 2
Q ss_pred HHHhhHHhcCChHHHHHHHhc
Q 005454 363 ALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~ 383 (696)
....+|...|+++++.+++.+
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 223345555666666555543
No 307
>PRK11619 lytic murein transglycosylase; Provisional
Probab=83.64 E-value=81 Score=35.34 Aligned_cols=132 Identities=9% Similarity=0.027 Sum_probs=64.9
Q ss_pred HcCCCHHHHHHHHHhcCCCChh---HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCCHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNRNLV---SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNP-DEVTVSNILGACFQTGRIDDAG 277 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~A~ 277 (696)
.+.|++..+.++...+...... .|..+..... ...+++....++ +..--| ....-...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~---~~~~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIR---ANPTLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHH---HCCCCchHHHHHHHHHHHHHHccCHHHHH
Confidence 3567777777777666542222 2332222111 112333333322 221111 1122223334456677777777
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 278 RLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 278 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
.++.. ...+...-.....+....|+.++|......+-..|. ..+.....++..+.+.|.+
T Consensus 120 ~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 120 AFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred HhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCC
Confidence 63322 234444445566677778887777777777655442 2344555666666554443
No 308
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.21 E-value=36 Score=30.96 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHH--HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhccCCHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSV--LSACLHADLFERGQNHFDSISAVHGITPSLDHYA-----CMINLLGRSSDVDKA 479 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A 479 (696)
+.....+++...+-+....++..| .......|++++|...++..... |.-+.+. .|.......|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 455555566554322222233332 34566788888888877765531 2223333 344567788888999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 480 VDLIKSLPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 480 ~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+..++....+. .......-...+...|+-++|...|++.++.++.
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 88888765331 1222333356777888888999999888887743
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.10 E-value=2.6 Score=25.56 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666777777777777777777766
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=82.90 E-value=25 Score=34.90 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhcCCc--HHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSF--TFVSVLSACLHADL--FERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
+.+...|+.+.+.|+..+.. ....++..+..... +..+.++++.+.+. ++++...+|..+.-+-
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 45677788888877766543 33333333322222 45778888888774 8888888877665443
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.83 E-value=12 Score=29.60 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=39.1
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 005454 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSED 318 (696)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 318 (696)
..+...|++++|..+.+.+..||...|-++... +.|..+++..-+.+|...|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 346788899999999888888898888877654 5666676766776776654
No 312
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.62 E-value=46 Score=31.77 Aligned_cols=216 Identities=17% Similarity=0.178 Sum_probs=107.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccC---CCC--CCccchHHHHHHHHhhcCchhHHHHHHHHHHh-----CCCCchHHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSE---DVR--PDKFSISSVVSSCAKLASLYHGQVVHGKAVVL-----GVDDDLLVSSA 363 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~ 363 (696)
+|..+.+.|++++.++.|.+|+.- .+. -.....++++.-.+...+.+....+++.-++. +-..=..+-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 455555555555555555555321 111 12233444555444444444444444332221 00000112234
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC------------C---CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT------------R---NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFV 428 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~------------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 428 (696)
|...|...|.+..-.++++.+.. + -...|..=|..|....+-.+...+|++.+...-........
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 55566666666666666554431 1 12245556777777777777778888766532222223344
Q ss_pred HHHHHHh-----cCCcHHHHHHHHHHhHHhhCCC--CCh---HHHHHHHHHHhccC----CHHHHHHHHHhCCCCCCHHH
Q 005454 429 SVLSACL-----HADLFERGQNHFDSISAVHGIT--PSL---DHYACMINLLGRSS----DVDKAVDLIKSLPHKPNSLI 494 (696)
Q Consensus 429 ~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~--p~~---~~~~~li~~~~~~g----~~~~A~~~~~~~~~~p~~~~ 494 (696)
.+++-|. +.|.+++|..-|-.+.+.+.-. |.. --|-.|.+++.+.| +-++| +-....|....
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEA----KPyKNdPEIlA 306 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEA----KPYKNDPEILA 306 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCccccc----CCCCCCHHHHH
Confidence 5666664 5678888876555554434322 222 23555666776665 22222 11223466778
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 005454 495 WSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~ 514 (696)
...|+.+|.. +++.+-+++
T Consensus 307 MTnlv~aYQ~-NdI~eFE~I 325 (440)
T KOG1464|consen 307 MTNLVAAYQN-NDIIEFERI 325 (440)
T ss_pred HHHHHHHHhc-ccHHHHHHH
Confidence 8888888854 444443333
No 313
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.25 E-value=16 Score=33.08 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=60.1
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCCCC------chHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPTRN------VVSWNSMINGYAQNGQDLEALALYDKLLQE---NLKPDSFTFVS 429 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ 429 (696)
..+..+.+.|++.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+.... |-.++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678899999999999999999987543 235677788888889999988887776542 22222222112
Q ss_pred HHHH--HhcCCcHHHHHHHHHHhH
Q 005454 430 VLSA--CLHADLFERGQNHFDSIS 451 (696)
Q Consensus 430 ll~a--~~~~g~~~~a~~~~~~m~ 451 (696)
+..+ +...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2221 234556666666554443
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.23 E-value=2.2 Score=27.38 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.++..|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888999999999999999887754
No 315
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=82.16 E-value=2.8 Score=28.99 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556788999999999999999999998866543
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.41 E-value=55 Score=31.82 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+.....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456788999999999999999999999999999999999999998888888888754
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.40 E-value=2.8 Score=25.16 Aligned_cols=26 Identities=15% Similarity=0.033 Sum_probs=13.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
..++...|+.++|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444555555555555555555553
No 318
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=12 Score=36.49 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-C--------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-R--------NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
|......+...+++.-....+++++...+-++.. | ..++|-.+ +..-++++++.++..=++-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 3444445555666666667788888887766652 2 22233322 233467789999988899999999
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
..|+..++..+.+.+++.+|.++.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999999887776655
No 319
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=80.60 E-value=68 Score=32.95 Aligned_cols=64 Identities=14% Similarity=0.213 Sum_probs=50.7
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTL---LSVCAMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA-ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 554 (696)
|...|.+| +..+.+.|-+..|.+..+-++.++|. ||..-...++.|+ ++++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455554 55678899999999999999999998 8888888888876 57788888888876654
No 320
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.30 E-value=1.3e+02 Score=35.48 Aligned_cols=239 Identities=13% Similarity=0.015 Sum_probs=109.0
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCH-HHHHHHHHhccCCChh
Q 005454 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRI-DDAGRLFHVIKEKDNV 289 (696)
Q Consensus 211 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~ 289 (696)
..+...+.++|...-...+..+.+.+.. ++...+..+... +|...-...+.++.+.+.. .....+...+..+|..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~ 699 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPV 699 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHH
Confidence 3455555567777777777777776653 355555555432 3433333444444443221 1122233334445665
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
.-...+..+...+..+ .. .+-+++. .+|...-...+.++...+..+. + ...--+++..+-...+.++.
T Consensus 700 VR~~A~~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~---l----~~~l~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 700 VRAAALDVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES---V----AGAATDENREVRIAVAKGLA 767 (897)
T ss_pred HHHHHHHHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH---H----HHHhcCCCHHHHHHHHHHHH
Confidence 5555556655443221 12 2222332 3444444444555554433221 1 11222345555555555555
Q ss_pred hcCChHH-H-HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 370 KCGVTDD-A-WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 370 ~~g~~~~-A-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
..+..+. + ..+...+.++|...-.+.+.++...|....+...+..+.+ .+|...-...+.++...+. +++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHH
Confidence 5554332 1 2223333455555555566666666655444333444433 3344444444555554443 2333333
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
..+.+ .|+...-...+.++++.
T Consensus 844 ~~~L~----D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 844 VEALT----DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHhc----CCCHHHHHHHHHHHhcc
Confidence 33332 24444444444555443
No 321
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.89 E-value=37 Score=29.90 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=48.4
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a 511 (696)
-...++.+++..++..+. -+.|.. +.-..-+..+.+.|++.+|..+|+++... |....-.+|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 345667777777777665 345553 22233345567788888888888887654 4444445555555443322222
Q ss_pred HHHHHHHHhcCC
Q 005454 512 EMAARHLFELEP 523 (696)
Q Consensus 512 ~~~~~~~~~~~p 523 (696)
....+.+++.++
T Consensus 97 r~~A~evle~~~ 108 (160)
T PF09613_consen 97 RRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHhcCC
Confidence 333444444443
No 322
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.80 E-value=1.6 Score=26.89 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=18.1
Q ss_pred hhhccCCCcccHHHHHHHHHHccCChHHHH
Q 005454 50 DLNFYEPNTTFLHNRLLHFYAKSGKLFYAR 79 (696)
Q Consensus 50 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (696)
++++..|....+|+.|...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344445444466666667777777666664
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.70 E-value=3.5 Score=25.02 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=24.9
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999988754
No 324
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.60 E-value=2.1 Score=25.68 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=24.6
Q ss_pred hHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 528 PYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999998763
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.25 E-value=9.6 Score=34.81 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=49.5
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CCchHHHHHHHHhhcCChhHHH
Q 005454 477 DKAVDLIKSLPHKP--NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI----NAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 477 ~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
++|.+.|-.+...| +....-.-+..|....|.+++..++-+++++.+. |+..+..|+.+|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45665555554433 2233334445566688899999999999987633 5788999999999999999875
No 326
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.68 E-value=4.4 Score=23.41 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.|..+...+...|+++.|...+++.++.+|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3455555666666677777766666666553
No 327
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.35 E-value=1.5e+02 Score=35.02 Aligned_cols=255 Identities=8% Similarity=-0.060 Sum_probs=125.0
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCC
Q 005454 277 GRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD 356 (696)
Q Consensus 277 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 356 (696)
..+...+..+|+..-...+..+.+.+. +++...+.+++.. +|...-...+.++...+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555556666666666666666654 3344544455432 33333334444444432211112222223222 4
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
|..+-...++.+...+..+ ...+...+..+|...-...+.++.+.+..+. +.... -.+|...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 5555555566555443211 2234455556666555555666665544322 12222 24555555555566655
Q ss_pred CCcHHH-HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 437 ADLFER-GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 437 ~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
.+..+. +...+..+.+ .++...-...+.++++.|..+.+...+......+|..+-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 2333434433 355666677777777777765554444444445565555556666666654 3344444
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 516 RHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..+++ +| +...-..-+.++.+.+.-.++...+....
T Consensus 844 ~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 844 VEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44442 22 34444455555555432334555554443
No 328
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=77.75 E-value=92 Score=32.30 Aligned_cols=421 Identities=10% Similarity=0.057 Sum_probs=205.3
Q ss_pred CCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccCCCC--CcchHHH
Q 005454 18 GQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKMPLR--DIISWNA 95 (696)
Q Consensus 18 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 95 (696)
.-|.|..+|-.|++-+. ..+..+..++.+.++...-|-.+.++..-++.-....++.....+|.+.... ++..|..
T Consensus 37 dNPtnI~S~fqLiq~~~--tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLE--TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHh--hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 34567788888888888 7777877777777776554433377777777777778888888888887653 5666766
Q ss_pred HHHHHHccCC---------hhHHHHHHhc-CC-C-CCcchHHHHHHHHH---hCC------ChhHHHHHHHHhHHCCCCC
Q 005454 96 LLSAHARSGS---------VQDLRALFDK-MP-I-RDSVSYNTAIAGFA---NKG------FSREALQVFSRMQKDRFEP 154 (696)
Q Consensus 96 li~~~~~~g~---------~~~A~~~f~~-~~-~-~~~~~~~~li~~~~---~~g------~~~~A~~l~~~m~~~g~~p 154 (696)
-++.--+.+. +-+|.++.-. +. + .....|+..+..+- ..| +.+...+.+.+|....+..
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 6654444321 1222222111 11 1 23334555443221 122 3344455555655432111
Q ss_pred ------CcchHHHHHHHHH---ccC----ChHHHHHHHHHHHH--cCCC----CchhHHHH-----------HHHHHHc-
Q 005454 155 ------TDYTHVSALNACA---QLL----DLRRGKQIHGKIVV--GNLG----GNVFVRNA-----------LTDMYAK- 203 (696)
Q Consensus 155 ------~~~t~~~ll~~~~---~~~----~~~~a~~~~~~~~~--~g~~----~~~~~~~~-----------li~~~~~- 203 (696)
|-..|..-++... -.| -+-.|++.++++.. .|+. .+..++|. .|..=..
T Consensus 195 leklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en 274 (660)
T COG5107 195 LEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMEN 274 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcC
Confidence 0011111111110 011 13345555555432 2321 11122221 2221111
Q ss_pred ----CCCH--HHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH-HHHhcCCH
Q 005454 204 ----GGEI--DKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG-ACFQTGRI 273 (696)
Q Consensus 204 ----~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~ 273 (696)
.|+. ....-+|++... -....|----.-+...++-+.|+.....-.. ..|. .+..+. .|.-..+-
T Consensus 275 ~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 275 GLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred CcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---hheeHHHHHhhcccH
Confidence 1121 112223333332 1223344444444556677777766554322 1222 222232 33444555
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHH---hcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHH
Q 005454 274 DDAGRLFHVIKEKDNVCWTTMIVGYT---QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAV 350 (696)
Q Consensus 274 ~~A~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 350 (696)
+.....|+...+.=..-|. ++.+=+ ..|+++..-+++-.=.. -=...|...+++..+...++.|+.+|.++.
T Consensus 350 e~v~~~fdk~~q~L~r~ys-~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYS-MGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHHhhhHHHHHHHHHHHHh-hhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5556666554321000010 111000 02233222222211111 113345556666666666777777777777
Q ss_pred HhC-CCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H
Q 005454 351 VLG-VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSW-NSMINGYAQNGQDLEALALYDKLLQENLKPD--S 424 (696)
Q Consensus 351 ~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~ 424 (696)
+.+ ..+++.++++++..|+ .|+...|..+|+.-. -+|...| +..+.-+...++-+.|..+|+..+.. +..+ .
T Consensus 425 k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k 502 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLK 502 (660)
T ss_pred ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhh
Confidence 766 4566777777776554 356666777776432 2444333 44555566667777777777755442 2222 3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
..|..+|.--+.-|++..+..+=+++..
T Consensus 503 ~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 503 RIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4666777766677777777776666654
No 329
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=14 Score=35.92 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=72.1
Q ss_pred cCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-CCh-----hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc
Q 005454 185 GNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-RNL-----VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV 258 (696)
Q Consensus 185 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 258 (696)
.|.+....+...++..-....+++.+...+-++.. ++. .+-.+.+..+ -.-++++++-++..=++.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 34555666667777777777888888888877654 221 1112223333 2347789999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcc
Q 005454 259 TVSNILGACFQTGRIDDAGRLFHVIK 284 (696)
Q Consensus 259 t~~~ll~~~~~~g~~~~A~~~~~~~~ 284 (696)
++..+++.+.+.+++.+|.++.-.|.
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999999999888766554
No 330
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.33 E-value=1.3 Score=38.48 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHH
Q 005454 328 SVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 328 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 407 (696)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666667777777888888888776666788888888888888777777777763332 222334445555555555
Q ss_pred HHHHHHH
Q 005454 408 ALALYDK 414 (696)
Q Consensus 408 A~~l~~~ 414 (696)
|.-++.+
T Consensus 89 a~~Ly~~ 95 (143)
T PF00637_consen 89 AVYLYSK 95 (143)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 5554443
No 331
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.26 E-value=1.2e+02 Score=33.54 Aligned_cols=26 Identities=19% Similarity=0.069 Sum_probs=16.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHH
Q 005454 159 HVSALNACAQLLDLRRGKQIHGKIVV 184 (696)
Q Consensus 159 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 184 (696)
|..+..++....+.+.+.++++.+.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 34455555666666777777766665
No 332
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=77.26 E-value=35 Score=27.17 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=46.1
Q ss_pred HhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVS 429 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (696)
+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 344667889999999988888889888877644 45677777777777887776 666665544
No 333
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.80 E-value=17 Score=28.69 Aligned_cols=46 Identities=20% Similarity=0.187 Sum_probs=34.1
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHH
Q 005454 138 REALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIV 183 (696)
Q Consensus 138 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 183 (696)
-++.+-++.+....+.|+.....+.|++|.+.+|+..|.++++-+.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455556666666777888888888888888888888888887666
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.12 E-value=5.8 Score=25.28 Aligned_cols=28 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777788888888888888877654
No 335
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.74 E-value=38 Score=37.22 Aligned_cols=184 Identities=18% Similarity=0.277 Sum_probs=104.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----------ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNEMLSEDVRPD----------KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
-..++-.|....+++..+++.+.+... || .+.|...++---+-|+-+.|..+.-.+++..-..
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v---- 276 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV---- 276 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC----
Confidence 344566677777777777777776642 22 1234334444444566777776665555532211
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHhcC
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT---FVSVLSACLHA 437 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~a~~~~ 437 (696)
.-++||-||++ |+.|- +-+.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+
T Consensus 277 ---apDm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~- 335 (1226)
T KOG4279|consen 277 ---APDMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE- 335 (1226)
T ss_pred ---CCceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh-
Confidence 12456777753 33322 12234455666778888888877 6776543 3344433211
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (696)
.++...++ .. .-..|-.+++|.|.++.-.++++-. ..+.+-...+|+.+|.++.+.
T Consensus 336 -~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 336 -HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred -hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHH
Confidence 11111111 11 1122446678999988877776432 344556678899999999999
Q ss_pred HHhcCCCCC
Q 005454 518 LFELEPINA 526 (696)
Q Consensus 518 ~~~~~p~~~ 526 (696)
|+++.|+.-
T Consensus 392 mfKLk~P~W 400 (1226)
T KOG4279|consen 392 MFKLKPPVW 400 (1226)
T ss_pred HhccCCcee
Confidence 999998654
No 336
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.96 E-value=31 Score=29.85 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=42.0
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHKPNS-LIWSTLLSVC 502 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 502 (696)
...++.+++..+++.|. -+.|+. +.-..-+..+...|++++|..+|++....+.. ..-.+|+.-|
T Consensus 21 L~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 21 LRSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HhcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 45788888888888875 445653 22233355667889999999999888765433 3333444444
No 337
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.22 E-value=63 Score=31.40 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=32.8
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKC 241 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 241 (696)
.++.....+...|.+.|++.+|+..|-.-.+++...+-.++..+...|...++
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 46788888999999999999999888665444444443455544555555444
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.98 E-value=80 Score=29.73 Aligned_cols=21 Identities=10% Similarity=0.077 Sum_probs=10.7
Q ss_pred hhcCchhHHHHHHHHHHhCCC
Q 005454 335 KLASLYHGQVVHGKAVVLGVD 355 (696)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~ 355 (696)
..++...|..+++++.+....
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555554443
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.23 E-value=23 Score=36.67 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=74.1
Q ss_pred cCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 402 NGQDLEAL-ALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 402 ~g~~~~A~-~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
.|+.-.|- +++.-+....-.|+.+...+.| ..+.|.++.+.+.+..... -+.....+..+++....+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45554443 4444455444466666555544 4577888888887776654 34455667778888888888888888
Q ss_pred HHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 481 DLIKSLPHK--PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 481 ~~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.+-+.|... .+..+...-.......|-++++...+++++.+.|+.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777665321 122222233333455667788888888888887653
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.22 E-value=59 Score=34.94 Aligned_cols=98 Identities=13% Similarity=-0.015 Sum_probs=50.6
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 005454 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181 (696)
Q Consensus 102 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 181 (696)
+.|+++.|.++..+. .+..-|..|-++..+.+++..|.+.|..... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555544332 2445566666666666777666666665542 33444445555555444444444
Q ss_pred HHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 005454 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216 (696)
Q Consensus 182 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (696)
..+.|.. |.-.-+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444421 2222334455666666665544
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.89 E-value=1.3e+02 Score=31.79 Aligned_cols=190 Identities=11% Similarity=0.122 Sum_probs=106.8
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC--CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
|.....++++.+...-.+.-...+-.+|. ..+-..|..++.+|..+ ..++-..+|+++.+. .-|.+.+..-+-.+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 44445566666666666666666655555 34555677777777777 566677777777773 34444444444444
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCC------hHHHHHHHHHHhccCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHh
Q 005454 435 LHADLFERGQNHFDSISAVHGITPS------LDHYACMINLLGRSSDVDKAVDLIKSLP----HKPNSLIWSTLLSVCAM 504 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~ 504 (696)
...++.+.+..+|..+.. .+.|. .+.|.-++..-+ .+.+.-..+...+. ...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444677777777777664 33442 234444444322 23444444443332 22233344444455666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHH--------------------HHHHHHhhcCChhHHHHHHHHhh
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYI--------------------MLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..|+++|.+++..+++.+..|..+-- ..+++-..-.++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 77777888877777776655544433 33333333556667776666553
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.68 E-value=70 Score=28.53 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=78.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChH-HHHHH--HHHHhccC
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLD-HYACM--INLLGRSS 474 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 474 (696)
+++.+..++|+.-|..+.+.|..--++ ..........+.|+...|...|+.+-.+ .-.|... -...| .-++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 456788888888888888866432221 1222233456788888888888888764 2223221 11112 23456788
Q ss_pred CHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 475 DVDKAVDLIKSLPHKPN---SLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 475 ~~~~A~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
.+++.....+.+..+.+ ...-.+|.-+-.+.|++..|.+.|+.+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888877654322 23556777777788999999998888776
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.53 E-value=1.7e+02 Score=32.81 Aligned_cols=149 Identities=12% Similarity=0.062 Sum_probs=77.9
Q ss_pred HHHHHccCChHHHHHHHccCCCC-----CcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 005454 66 LHFYAKSGKLFYARDLFDKMPLR-----DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140 (696)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 140 (696)
|+.+.+.+.+++|..+-+..... -...+...|..+.-.|++++|-.+.-.|-..+..-|..-+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45556666777777666655432 2235566666777777777777777777666666666666666665554433
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHH--------------------cCCCCchhHHHHHHHH
Q 005454 141 LQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVV--------------------GNLGGNVFVRNALTDM 200 (696)
Q Consensus 141 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--------------------~g~~~~~~~~~~li~~ 200 (696)
..+ +....-..+...|..+|..+.. .+. ...++...+ .. .-+..+...|+..
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~L 514 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAHL 514 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHHH
Confidence 322 2221111233345555544443 111 111111110 00 1122233447777
Q ss_pred HHcCCCHHHHHHHHHhcCCCCh
Q 005454 201 YAKGGEIDKARWLFDRMNNRNL 222 (696)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~ 222 (696)
|...+++..|..++-...++++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHccChHHHHHHHHhccChHH
Confidence 7777777777777766665443
No 344
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.06 E-value=1e+02 Score=30.25 Aligned_cols=19 Identities=5% Similarity=0.151 Sum_probs=12.1
Q ss_pred HHhcCCcHHHHHHHHHHhH
Q 005454 433 ACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~ 451 (696)
.+.+.+++++|.++|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456677777777776443
No 345
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.75 E-value=11 Score=35.21 Aligned_cols=82 Identities=12% Similarity=0.132 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHH-hCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 473 SSDVDKAVDLIK-SLPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 473 ~g~~~~A~~~~~-~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
..+++.|..-+. .+...|+.. -|..=+-.+.+.++++.+..-..+++++.|+..-....++........+++|+..+.
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ 102 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 345555655443 355567764 445555566778888888888889999999888888889999999999999999888
Q ss_pred Hhhh
Q 005454 551 SMKS 554 (696)
Q Consensus 551 ~m~~ 554 (696)
+..+
T Consensus 103 ra~s 106 (284)
T KOG4642|consen 103 RAYS 106 (284)
T ss_pred HHHH
Confidence 7744
No 346
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=71.70 E-value=1.2e+02 Score=30.86 Aligned_cols=110 Identities=12% Similarity=0.224 Sum_probs=80.9
Q ss_pred HHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCC-----
Q 005454 464 ACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTL------------LSVCAMKGDIKHGEMAARHLFELEPINA----- 526 (696)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~p~~~----- 526 (696)
..|...+-..|++++|.+++.+.+.+ ||+++ +..|...+|+-.|.-+.+++....-+++
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 34667788899999999999988653 22222 4567888999999888877755332222
Q ss_pred --chHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEe
Q 005454 527 --GPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVS 577 (696)
Q Consensus 527 --~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 577 (696)
..|..++.+..+.+.+=++.+.++..-+.|-.+....-|+.+-..+..|+.
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 358899999999999999999999998877766655558776666656654
No 347
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.64 E-value=25 Score=28.05 Aligned_cols=47 Identities=13% Similarity=0.080 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 486 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
+..-|++.+..+-+.+|++.+|+..|.++++-+...-.+....|-.+
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 44468999999999999999999999999998866554444355554
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.33 E-value=1.4e+02 Score=32.77 Aligned_cols=151 Identities=10% Similarity=0.090 Sum_probs=74.3
Q ss_pred HcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 401 QNGQDLEALALYDKLLQ-------ENLKPDSFTFVSVLSACLHAD-----LFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
...+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++...... | .|+....-....
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHHHHHHHHH
Confidence 34455555555555544 33 2223334444444422 445566666655441 2 233333222222
Q ss_pred HHhc-cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc-CCh
Q 005454 469 LLGR-SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCA----MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC-GRW 542 (696)
Q Consensus 469 ~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~ 542 (696)
..+. -.+...|.++|...-..-.....-.+...+. ...+.+.|...++++-+.++ +.+...+...+.-. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccc
Confidence 2222 2345667777766543323332222222221 23467788888888887773 33333333333222 788
Q ss_pred hHHHHHHHHhhhCCCc
Q 005454 543 EDVASIRSSMKSKNVK 558 (696)
Q Consensus 543 ~~A~~~~~~m~~~~~~ 558 (696)
+.+.-.+..+.+.|..
T Consensus 414 ~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 414 DTALALYLYLAELGYE 429 (552)
T ss_pred cHHHHHHHHHHHhhhh
Confidence 8888877777776653
No 349
>PRK12798 chemotaxis protein; Reviewed
Probab=71.10 E-value=1.3e+02 Score=31.04 Aligned_cols=180 Identities=12% Similarity=0.158 Sum_probs=117.9
Q ss_pred cCChHHHHHHHhcCCC----CCchHHHHHHHHHH-HcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhcCCcHH
Q 005454 371 CGVTDDAWTVFNMMPT----RNVVSWNSMINGYA-QNGQDLEALALYDKLLQENLKPDS----FTFVSVLSACLHADLFE 441 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 441 (696)
.|+..+|.+.+..+.. +....+-.|+.+-. ...++.+|+++|++..- ..|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888899999888873 34456667766544 46788999999998766 45543 23444455567889999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHH-HHHHHhc---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYAC-MINLLGR---SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARH 517 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~---~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 517 (696)
++..+-.+..+.|.-.|=...|.. ++.++.+ .-..+.-..++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877777776665565443322 3333333 334455556666665433455888888888999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHh-----hcCChhHHHHHHHHhh
Q 005454 518 LFELEPINAGPYIMLSNMYA-----ACGRWEDVASIRSSMK 553 (696)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~ 553 (696)
+..+... ...-...+..|. -..+.++|.+.+..+-
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9988733 222233333332 2345677777665543
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=70.93 E-value=14 Score=33.06 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC----hhHHHHHHHHhh
Q 005454 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGR----WEDVASIRSSMK 553 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m~ 553 (696)
+++|..-+++++.++|+...++..++++|...+. ..+|..+|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4667778888999999999999999999988764 334445554443
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.87 E-value=65 Score=33.53 Aligned_cols=139 Identities=8% Similarity=-0.008 Sum_probs=93.5
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
..|+.-.|-+-+....+.+.-.|+.... ....+...|.++.+...+..... .....+...++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566665554444444434445554333 33445678999999999866432 2345577788888889999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEec
Q 005454 514 AARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578 (696)
Q Consensus 514 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~ 578 (696)
..+.++.-+-.+++....-+..--..|-+|++.-.|+++..-. +....-|+..-.....|-.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCc
Confidence 9999999887777776666666667789999999999886533 33334466554444445433
No 352
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.81 E-value=3.4 Score=40.59 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=57.1
Q ss_pred ccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHH
Q 005454 472 RSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
..|.+++|++.+... +..| ....|.--.+++.+.+....|++-+..+++++|+....|-.-..+....|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 355566666666543 3333 33344444556666777777777777777777777777777777777777777777777
Q ss_pred HHhhhCCCc
Q 005454 550 SSMKSKNVK 558 (696)
Q Consensus 550 ~~m~~~~~~ 558 (696)
....+.++.
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 777665553
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.68 E-value=39 Score=30.99 Aligned_cols=73 Identities=8% Similarity=-0.049 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhccCCHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHG--ITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
++|.+.|-++...+.--+......|..-|. ..+.++++.++.+..+-+. -.+|++.+.+|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555443333333333333333 3445555555555543221 134455555555555555555554
No 354
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.06 E-value=9.9 Score=29.85 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
...+++.++.+|+|...-..++..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345666777888888888888888888888888888877776543
No 355
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=68.75 E-value=18 Score=33.44 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=42.9
Q ss_pred HHHHHHhccCCHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 465 CMINLLGRSSDVDKAVDLIKS-LPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.-+..+.+.+++++|+...+. +..+|. ...-..|+..++..|++++|..-++-+-++.|+..
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566777788888777654 455553 34556677777888888888888887777777654
No 356
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.15 E-value=1.4e+02 Score=31.34 Aligned_cols=126 Identities=12% Similarity=0.016 Sum_probs=56.3
Q ss_pred HHCCCCCCcch--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCchh--HHHHHHHHHHcCCCHHHHHHHHHhcCCCC--
Q 005454 148 QKDRFEPTDYT--HVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF--VRNALTDMYAKGGEIDKARWLFDRMNNRN-- 221 (696)
Q Consensus 148 ~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 221 (696)
.+.|..|+... -.+.+..++..|+.+. .+.+++.|..++.. .....+...++.|+.+.+..+++.-...+
T Consensus 22 l~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 97 (413)
T PHA02875 22 LDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDV 97 (413)
T ss_pred HHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCccccc
Confidence 34455554322 2233334444555543 33344445433321 11223444556777777766665433211
Q ss_pred --hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHh
Q 005454 222 --LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV--SNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 222 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
..-+ +.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|+.+-+..+++.
T Consensus 98 ~~~~g~-tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 98 FYKDGM-TPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred ccCCCC-CHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 1111 222223344544 445555566665543321 2234444566666666555544
No 357
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=67.54 E-value=11 Score=38.93 Aligned_cols=86 Identities=20% Similarity=0.164 Sum_probs=60.1
Q ss_pred HHHhccCCHHHHHHHHHh-CCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTL-LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
+-+...+.++.|..++.+ +...||-..|-+. ..++.+.+++..|..=+.++++++|...-.|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 334455666777766654 3445655443332 36677788888888888888888888888888888888888888888
Q ss_pred HHHHHHhh
Q 005454 546 ASIRSSMK 553 (696)
Q Consensus 546 ~~~~~~m~ 553 (696)
...++..+
T Consensus 92 ~~~l~~~~ 99 (476)
T KOG0376|consen 92 LLDLEKVK 99 (476)
T ss_pred HHHHHHhh
Confidence 88876554
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=67.21 E-value=1.6e+02 Score=30.54 Aligned_cols=61 Identities=11% Similarity=0.026 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhC
Q 005454 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLG 353 (696)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 353 (696)
..|+.-|...|+..+|-..++++--- .-...+.+-+++.+.-+.++-.....+++...+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34556666667777776666665321 11233445555556666665555555555554444
No 359
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=66.13 E-value=94 Score=32.22 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=63.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--cCCcHHHHHHHHHHhHHhhCCC--CChHHHHHHHHHHh
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSF--TFVSVLSACL--HADLFERGQNHFDSISAVHGIT--PSLDHYACMINLLG 471 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~li~~~~ 471 (696)
.+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++..... ... -....+..++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~-~~~l~~~~~~l~~~~~~~~ 217 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR-DKALNQEREGLKELVEVLK 217 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHH
Confidence 344778999999999998886 555554 3333444443 456788888888877653 111 11222333333222
Q ss_pred ccCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHH--hcCChHHHHHHHHHHHhc
Q 005454 472 RSSDVDKAVDLIKSLPHKPNS-LIWSTLLSVCA--MKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 472 ~~g~~~~A~~~~~~~~~~p~~-~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~ 521 (696)
....+.........-..++.. .+...+.++-+ ..|+++.|...+-+++|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 218 ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222211111111211 23344444444 368888887777666663
No 360
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=66.10 E-value=1.5e+02 Score=29.57 Aligned_cols=54 Identities=17% Similarity=0.368 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--C----CcHHHHHHHHHHhHHhhCCCC
Q 005454 405 DLEALALYDKLLQENLKPDSFTFVSVLSACLH--A----DLFERGQNHFDSISAVHGITP 458 (696)
Q Consensus 405 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~----g~~~~a~~~~~~m~~~~~~~p 458 (696)
+++.+.+++.|.+.|++-+..+|.+....... . .....+..+|+.|++.|.+--
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 34566788899999988888777664333222 2 235678889999988765443
No 361
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.32 E-value=72 Score=29.18 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=38.5
Q ss_pred HHHHHhccCCHHHHHHHHHh-CCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 466 MINLLGRSSDVDKAVDLIKS-LPHKPNSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~-~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
-.-++.+.+.++.|++--.+ +...|... ....-..+|.+...++.|..-|+++++.+|....+-...+
T Consensus 140 raaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 140 RAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred hHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 33445555666666544432 33334221 2222344566677788888888888888887655444433
No 362
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=64.68 E-value=1.2e+02 Score=28.19 Aligned_cols=61 Identities=18% Similarity=0.128 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHccCChhHHHHHHhcCCCCCc-chHHHHHHH--HHhCCChhHHHHHHHHhHHC
Q 005454 90 IISWNALLSAHARSGSVQDLRALFDKMPIRDS-VSYNTAIAG--FANKGFSREALQVFSRMQKD 150 (696)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~l~~~m~~~ 150 (696)
+.++|-|.--+...|+++.|.+.|+...+-|. .-|..+=++ +.--|+++-|.+-|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 34566666666677777777777776655432 223333222 22346777776666665543
No 363
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.43 E-value=1.3e+02 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=14.5
Q ss_pred CChHHHHHHHHHHHhcCCCC
Q 005454 506 GDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~ 525 (696)
.|.-.+..++++-.+++|.=
T Consensus 209 ~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcc
Confidence 56667777778888888753
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.00 E-value=13 Score=24.62 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=22.1
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 457888999999999999998887543
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.80 E-value=1.5e+02 Score=34.27 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=63.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
-|..|+..|...|+.++|++++.+.....-.-|. +. .+.-..+.+.+.+.+-+ +..+.-...+ +.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~-~~------------~~~~e~ii~YL~~l~~~-~~~Li~~y~~-wv 570 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDS-FQ------------LDGLEKIIEYLKKLGAE-NLDLILEYAD-WV 570 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcccccccc-ch------------hhhHHHHHHHHHHhccc-chhHHHHHhh-hh
Confidence 4788888899999999999998888753100111 00 01111233333333311 1111111111 11
Q ss_pred cCCCHHHHHHHHHhcCCCChhHHH-HHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005454 203 KGGEIDKARWLFDRMNNRNLVSWN-LMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 269 (696)
-..+.+...++|..-......+.+ .-+-.|......+-+...++.+....-.++..-.+.++..|..
T Consensus 571 l~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 571 LNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 233444455555441100001111 1223455566677777777777766555666666666666654
No 366
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.37 E-value=79 Score=29.96 Aligned_cols=152 Identities=13% Similarity=0.113 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHcCCCCCh--HHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHH--HccCChHHHH
Q 005454 4 KHKLRQAIDTLYSRGQAATE--EAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFY--AKSGKLFYAR 79 (696)
Q Consensus 4 ~~~~~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~ 79 (696)
...++.+++.+...++.... ..+-.+|.-+.. ..+ ....-......++++. +..+++++ ...++++.|.
T Consensus 26 ~~~L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~-~~~----~~~~~~Fa~~f~ip~~--~~~~~~g~W~LD~~~~~~A~ 98 (226)
T PF13934_consen 26 DNDLRALLDLILSSNVSLLKKHSLFYYLLLDLDD-TRP----SELAESFARAFGIPPK--YIKFIQGFWLLDHGDFEEAL 98 (226)
T ss_pred HHHHHHHHHHHhcCCcCHHHhHHHHHHHHHhcCc-ccc----ccHHHHHHHHhCCCHH--HHHHHHHHHHhChHhHHHHH
Confidence 45577778877776653321 122223333321 111 1122223334454443 33444444 5667888888
Q ss_pred HHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCC--CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc
Q 005454 80 DLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIR--DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDY 157 (696)
Q Consensus 80 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 157 (696)
+.+..-... ..-..-++..+...|+.+.|.+++..+..+ +...-..++.. ..++.+.+|+.+-+...+.. ...
T Consensus 99 ~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~ 173 (226)
T PF13934_consen 99 ELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRR 173 (226)
T ss_pred HHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHH
Confidence 877544222 112234777777789999999988887543 22222333333 67788888888776665421 123
Q ss_pred hHHHHHHHHH
Q 005454 158 THVSALNACA 167 (696)
Q Consensus 158 t~~~ll~~~~ 167 (696)
.+..++..|.
T Consensus 174 l~e~l~~~~~ 183 (226)
T PF13934_consen 174 LFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 367
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=63.12 E-value=12 Score=22.05 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=23.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
|+.+.+..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888999999998888888777766543
No 368
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.31 E-value=20 Score=40.05 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=79.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
+.++++.+.+.+...--| .++|..+.+.|..+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 355666655544332222 13444556677777776655433322 244567899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 482 LIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 482 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.-+++. |..+|..|.......|+.+.|+..|++.... ..|+-+|.-.|+.++-.++.+..
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf--------ekLsfLYliTgn~eKL~Km~~ia 724 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF--------EKLSFLYLITGNLEKLSKMMKIA 724 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh--------hheeEEEEEeCCHHHHHHHHHHH
Confidence 988875 7789999999999999999999999987653 34556677777776655544433
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.65 E-value=88 Score=33.49 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCC--CCchH---HHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPT--RNVVS---WNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
..|+.-|.+.+++++|..++..|.= -.... .+.+.+.+.+..-..+....++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3567788899999999999888861 12222 333344444444444555555555443
No 370
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.55 E-value=1.6e+02 Score=28.26 Aligned_cols=180 Identities=11% Similarity=0.123 Sum_probs=86.5
Q ss_pred hcCChhHHHHHHHHhccCCCCCCcc---chHHHHHHHHhhcCchhHHHHHHHHHH---hCC--CCchHHHHHHHhhHHhc
Q 005454 300 QNGKEEDALILFNEMLSEDVRPDKF---SISSVVSSCAKLASLYHGQVVHGKAVV---LGV--DDDLLVSSALIDMYCKC 371 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~y~~~ 371 (696)
+...+++|+.-|.+.++....-... .+..++....+.+++++....+.+++. ..+ .-+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888998888887632222222 223345556667777766666665532 111 12334455555555555
Q ss_pred CChHHHHHHHhcCC-----CCCchHH----HHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CH-------HHHHHHH
Q 005454 372 GVTDDAWTVFNMMP-----TRNVVSW----NSMINGYAQNGQDLEALALYDKLLQENLKP----DS-------FTFVSVL 431 (696)
Q Consensus 372 g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~-------~t~~~ll 431 (696)
.+.+--...|+.-. .+|...| +.+...|...|.+.+..++++++.++--.- |. ..|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 55554444443221 1222222 345555666666666666666665432111 11 1344444
Q ss_pred HHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH----HHHHhccCCHHHH
Q 005454 432 SACLHADLFERGQNHFDSISAVHGITPSLDHYACM----INLLGRSSDVDKA 479 (696)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A 479 (696)
+.|....+-..-..++++......-.|.+.....+ ..+..+.|++++|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~A 250 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKA 250 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHH
Confidence 44544455455555555544332333443333222 1233445555555
No 371
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.25 E-value=53 Score=27.92 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
.-.|.-++.+.|+++.+.+..+.+++.+|+|..+
T Consensus 74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3345567889999999999999999999987543
No 372
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.94 E-value=19 Score=20.34 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.|..+...+...|++++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455566666667777777777766654
No 373
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=59.52 E-value=89 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.410 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHH
Q 005454 224 SWNLMISGYLKNGQPKKCIDLFQEMQL 250 (696)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 250 (696)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999998877
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.34 E-value=1.7e+02 Score=33.76 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccC
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSE 317 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (696)
.|..|+..|...|+.++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788889999999999999999988753
No 375
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.07 E-value=1.4e+02 Score=31.48 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=66.6
Q ss_pred hhHHhcCChHHHHHHHhcCC---------CC---CchHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH--
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---------TR---NVVSWNSMINGYAQNGQDLEALALYDKLLQ-------ENLKPDS-- 424 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---------~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~p~~-- 424 (696)
+.+.-.|+...|.+++.... .| .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 44566788999988886543 11 233578887777788888777777776653 4655542
Q ss_pred ---------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 425 ---------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 425 ---------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.+|+.= -.+.+.|++-.|.+.|....+.+. .++..|-.|.+.+
T Consensus 328 tls~nks~eilYNcG-~~~Lh~grPl~AfqCf~~av~vfh--~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCG-LLYLHSGRPLLAFQCFQKAVHVFH--RNPRLWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHhhh-HHHHhcCCcHHHHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 233332 246788888899888888877543 4445565555554
No 376
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=58.47 E-value=99 Score=25.09 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhc
Q 005454 236 GQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEML 315 (696)
Q Consensus 236 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 315 (696)
...++|..+.+.+...+- -....-..-+..+.+.|++++|...=.....||...|-+|.. .+.|-.+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777766543 122222233344778888888855555555778888876654 46777888888888776
Q ss_pred cCC
Q 005454 316 SED 318 (696)
Q Consensus 316 ~~g 318 (696)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 377
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=58.24 E-value=1.7e+02 Score=28.74 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhHHHHHHh-----cCCCCCcchHHHHHHHHHh-CCChhHHHHHHHHhHHCC--CCCCcchHHHHHHHHHccCChHHHHH
Q 005454 106 VQDLRALFD-----KMPIRDSVSYNTAIAGFAN-KGFSREALQVFSRMQKDR--FEPTDYTHVSALNACAQLLDLRRGKQ 177 (696)
Q Consensus 106 ~~~A~~~f~-----~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~ 177 (696)
+.+|.++|+ +-.-.|...-..+++.... .+.--.|+--+-...... -.++..+...+|..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHc-CCCCchhHHHHHHHHHHcCCCHHHHHHHHHh
Q 005454 178 IHGKIVVG-NLGGNVFVRNALTDMYAKGGEIDKARWLFDR 216 (696)
Q Consensus 178 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 216 (696)
++...... +...|...|..+|+.-.+.|+..-..++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.29 E-value=46 Score=29.94 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=27.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
..+..|.+.|.+++|.+++++.++ +|++...-..|..+-
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 345578888888888888888888 776665544444443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.90 E-value=24 Score=26.66 Aligned_cols=47 Identities=4% Similarity=-0.004 Sum_probs=27.5
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
+....++|+..|....+...-.|+ ..++.+++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777666653222222 24566666777777777666554
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.65 E-value=26 Score=23.16 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=17.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 005454 395 MINGYAQNGQDLEALALYDKLLQEN 419 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g 419 (696)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777776544
No 381
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.43 E-value=1.6e+02 Score=26.95 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=49.5
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCc--hHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchH--HHHHHHHHHHcCChHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVS--WNSMINGYAQNGQDLE 407 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 407 (696)
.+...++++.|...++.......+.+ ..+--.|.......|..|+|...++....++-.+ ...-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34455666666666655543221111 1111234455666777777777777766554332 2233456777777777
Q ss_pred HHHHHHHHHHCC
Q 005454 408 ALALYDKLLQEN 419 (696)
Q Consensus 408 A~~l~~~m~~~g 419 (696)
|..-|.+.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 777777777654
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.16 E-value=37 Score=36.19 Aligned_cols=100 Identities=13% Similarity=-0.019 Sum_probs=64.1
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhccCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSL--DHYACMINLLGRSSDVDKAVDLIKSL-PH-KPNSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~ 510 (696)
...|+...|...+..+.. ..|.. .....|..++.+.|...+|-.++... .. ...+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 345677777777666542 33322 23345566666777777777766542 11 2334566677777777888888
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
|.+.++.+++++|+++..-..|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 888888888888888877666655544
No 383
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=56.14 E-value=40 Score=27.07 Aligned_cols=59 Identities=24% Similarity=0.227 Sum_probs=47.2
Q ss_pred hhhhhhhhHHHHHHhhhccCCCCCCcEEEEecccccCchhHHHHHHhhhcCceEEEecCC
Q 005454 621 VKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFMKFASDIIGRTIILRDSN 680 (696)
Q Consensus 621 ~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn~~~c~~ch~~~k~~s~~~~r~i~~rd~~ 680 (696)
+..|..|.|.-++--=-.+..+| ..+-|---.+-|..|..++.-.|.-.|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~G-d~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPG-DRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCC-ceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 34578899988874433444458 778888888999999999999999999999988754
No 384
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.89 E-value=79 Score=26.45 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+..+-+..+..-.+.|+......-+.||.+.+++..|.++|+.++. ...+.-..|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 3445556666667899999999999999999999999999998875 34444445665554
No 385
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=55.45 E-value=35 Score=27.00 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=36.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCC---------CchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 503 AMKGDIKHGEMAARHLFELEPIN---------AGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+.||+..|...+.+.++....+ ..+...++.++...|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677777777777766644221 12345677888899999999999887754
No 386
>PRK11619 lytic murein transglycosylase; Provisional
Probab=55.36 E-value=3.5e+02 Score=30.46 Aligned_cols=427 Identities=9% Similarity=-0.029 Sum_probs=192.6
Q ss_pred HccCChhHHHHHHhcCCCCCcc---hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH-HHHHHHHHccCChHHHH
Q 005454 101 ARSGSVQDLRALFDKMPIRDSV---SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTH-VSALNACAQLLDLRRGK 176 (696)
Q Consensus 101 ~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~ 176 (696)
.+.|++..+.++-..+...-.. .|..|..... ...+++....+++-. -.|-...+ ...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQVTNFIRANP---TLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888877777533222 2333332211 223444444333322 12222221 22333444555555444
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcC---CCChhHHHHHHHHHHhCCCchHHHHHHHHH---HH
Q 005454 177 QIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMN---NRNLVSWNLMISGYLKNGQPKKCIDLFQEM---QL 250 (696)
Q Consensus 177 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m---~~ 250 (696)
..+. ..+.+......+..+....|+.++|......+= ......++.++..+.+.|...... ++.+| ..
T Consensus 120 ~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~ 193 (644)
T PRK11619 120 AFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMK 193 (644)
T ss_pred HhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHH
Confidence 4221 124455555667777777888776655555442 134566777777777666554432 22222 22
Q ss_pred cCC-----------CCCcch-HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHH--hcCChhHHHHHHHHhcc
Q 005454 251 LGL-----------NPDEVT-VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYT--QNGKEEDALILFNEMLS 316 (696)
Q Consensus 251 ~g~-----------~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~ 316 (696)
.|- .++... ...++..+ .+...+...+.... ++...-...+.++. ...+.+.|..++.....
T Consensus 194 ~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~ 269 (644)
T PRK11619 194 AGNTGLVTYLAKQLPADYQTIASALIKLQ---NDPNTVETFARTTG-PTDFTRQMAAVAFASVARQDAENARLMIPSLVR 269 (644)
T ss_pred CCCHHHHHHHHHhcChhHHHHHHHHHHHH---HCHHHHHHHhhccC-CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 221 111110 00111111 11122222222211 11111111111111 23445667777766533
Q ss_pred C-CCCCCcc--chHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCch
Q 005454 317 E-DVRPDKF--SISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVV 390 (696)
Q Consensus 317 ~-g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~ 390 (696)
. +..++.. ....+.......+....+...+....... .+......-+..-.+.++++.+...+..|+. ....
T Consensus 270 ~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~r 347 (644)
T PRK11619 270 AQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDE 347 (644)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHh
Confidence 2 1222111 11111111111111333433333322221 1333334444455577777777777777753 1122
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh------HHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL------DHYA 464 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~~ 464 (696)
-..=+..++...|+.++|...|+++.. . .+|-.++.+- +.|..-. .. ....|.. .--.
T Consensus 348 w~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa~-~Lg~~~~-~~--------~~~~~~~~~~~~~~~~~ 411 (644)
T PRK11619 348 WRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAAQ-RLGEEYP-LK--------IDKAPKPDSALTQGPEM 411 (644)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHHH-HcCCCCC-CC--------CCCCCchhhhhccChHH
Confidence 223345665667777777777777633 1 1344433221 1121100 00 0000000 0011
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCchHHHHHHHHhhcCC
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE---PINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~ 541 (696)
.-+..+...|...+|...+..+....+......+.......|..+.+..+..+....+ -.-|..|......+++.-.
T Consensus 412 ~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~ 491 (644)
T PRK11619 412 ARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKG 491 (644)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcC
Confidence 2345667788999988888765545555556666666677888888877775543321 1123356666666666666
Q ss_pred hhHHHHHHHHhhhCCCcC
Q 005454 542 WEDVASIRSSMKSKNVKK 559 (696)
Q Consensus 542 ~~~A~~~~~~m~~~~~~~ 559 (696)
.+.+.-.--...+.++.+
T Consensus 492 v~~~lv~ai~rqES~f~p 509 (644)
T PRK11619 492 IPQSYAMAIARQESAWNP 509 (644)
T ss_pred CCHHHHHHHHHHhcCCCC
Confidence 776664433334666644
No 387
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.95 E-value=1.2e+02 Score=24.85 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478889999999999999999999876
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.91 E-value=66 Score=27.86 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=39.3
Q ss_pred CCcchHHHHHHHHHhCCC-hhHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 005454 119 RDSVSYNTAIAGFANKGF-SREALQVFSRMQKDRFEPTDYTHVSALNACAQL 169 (696)
Q Consensus 119 ~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 169 (696)
.+..+|+.++.+.++..- ---+..+|.-|.+.+.+++..-|..++.+|.+-
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888866655 345678888888888888888899999887654
No 389
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.47 E-value=1.1e+02 Score=26.58 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc---------CCChhHHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 261 SNILGACFQTGRIDDAGRLFHVIK---------EKDNVCWTTMIVGYTQNGK-EEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 261 ~~ll~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
+.++.-....+.......+++.+. ..+..+|.+++.+..+..- ---+..+|+-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444432 1244566777776655544 345566777777666777777777777
Q ss_pred HHHHhh
Q 005454 331 SSCAKL 336 (696)
Q Consensus 331 ~~~~~~ 336 (696)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 776654
No 390
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=53.73 E-value=1.3e+02 Score=29.13 Aligned_cols=87 Identities=16% Similarity=0.094 Sum_probs=51.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh--
Q 005454 396 INGYAQNGQDLEALALYDKLLQ--ENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG-- 471 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-- 471 (696)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.+.+....++-....+. .-.-+..-|..++++|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 6677777777777765544433 2244444333333 366777777777776666653 11222334666666553
Q ss_pred ---ccCCHHHHHHHHHh
Q 005454 472 ---RSSDVDKAVDLIKS 485 (696)
Q Consensus 472 ---~~g~~~~A~~~~~~ 485 (696)
=.|.+++|++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 46888888888743
No 391
>PF15161 Neuropep_like: Neuropeptide-like
Probab=53.70 E-value=5.7 Score=27.01 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=11.3
Q ss_pred cccccCchhHHHHHHhh
Q 005454 652 NIRVCGDCHLFMKFASD 668 (696)
Q Consensus 652 n~~~c~~ch~~~k~~s~ 668 (696)
.-|-|.|||.+- |+-+
T Consensus 12 esRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCchhhHHHH-HHHH
Confidence 457899999764 5543
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.95 E-value=76 Score=30.03 Aligned_cols=88 Identities=15% Similarity=0.075 Sum_probs=65.2
Q ss_pred HHHHhccCCHHHHHHHHHh---------CCCCCCHHHHH-----------HHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 467 INLLGRSSDVDKAVDLIKS---------LPHKPNSLIWS-----------TLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~---------~~~~p~~~~~~-----------~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+-+.+.|++.+|..-+.. +..+|...-|- .+-.++...|++-++++....++...|.|.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH
Confidence 4456677777777655543 23345444443 233445577999999999999999999999
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+|..-+.+.+..=+.++|..-+....+
T Consensus 265 KA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 265 KAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 9999999998888888888888887765
No 393
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.95 E-value=1e+02 Score=23.98 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHH
Q 005454 176 KQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCI 242 (696)
Q Consensus 176 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 242 (696)
.+++......|+- +......+-.+-...|+.+.|.++++.++ +..-.|...+.++-..|+-.-|.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4555566665532 22333333333335688888888888888 77788888888888877765554
No 394
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=52.81 E-value=36 Score=21.29 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHhcCCC
Q 005454 495 WSTLLSVCAMKGDIKHGEMA--ARHLFELEPI 524 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 524 (696)
|-++...+...|++++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44556666677777777777 3366666554
No 395
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.38 E-value=50 Score=28.51 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 477 DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 477 ~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
+.|.++++-|+ .....-.........|++..|.++.+.++..+|+|..+-...+++|...|.-.
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45666666665 22333344455677999999999999999999999999889988887766443
No 396
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=52.19 E-value=89 Score=29.31 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChH-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 494 IWSTLLSVCAMKGDIK-------HGEMAARHLFELE--PIN----AGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.+.-+...|+..|+.+ .|...|+++++.+ |.. ......++.++.+.|+.++|.+.+.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4444555666666643 4555555555544 222 2456788999999999999999999887644
No 397
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.08 E-value=3.1e+02 Score=28.62 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=42.0
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCC---CchHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTR---NVVSWNSMINGYAQNGQDLEALALYDKLLQEN 419 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 419 (696)
..|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.++++.-.+|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667778888888888888876644 44567778888888887777777777766655
No 398
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.19 E-value=37 Score=33.06 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=31.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
.+.|+.++|..+|+.++.+.|.++.+...++...-..++.-+|..++-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 456677777777777777777777766666666555555555555553
No 399
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=49.90 E-value=4.9 Score=36.24 Aligned_cols=10 Identities=40% Similarity=1.032 Sum_probs=7.8
Q ss_pred cccccCchhH
Q 005454 652 NIRVCGDCHL 661 (696)
Q Consensus 652 n~~~c~~ch~ 661 (696)
|+..|.-||.
T Consensus 180 nlk~Cn~Ch~ 189 (235)
T KOG4718|consen 180 NLKNCNLCHC 189 (235)
T ss_pred HHHHHhHhHH
Confidence 7778888885
No 400
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.15 E-value=1.1e+02 Score=30.30 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=28.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHhcCCcHHHHHHHHH
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPDSF---TFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
+..+-.+.|+..+|.+.|+.+.+. .|-.. .-..++.+|.....+.+...++-
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445678888888888776653 23111 22345666665555544444443
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.92 E-value=1.5e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=43.7
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
.++|..|.+.+...+. ....+.-.-+..+...|++++|...=.....||...|-++-. .+.|..+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3455555555544432 122222223344567777777755545555677777765533 4667777777777777665
Q ss_pred CCCCCHHHHH
Q 005454 419 NLKPDSFTFV 428 (696)
Q Consensus 419 g~~p~~~t~~ 428 (696)
| .|....|.
T Consensus 99 g-~~~~q~Fa 107 (116)
T PF09477_consen 99 G-SPELQAFA 107 (116)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 5 44444443
No 402
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=48.83 E-value=6.5 Score=28.30 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.0
Q ss_pred ceEEEecCCccccccCCccC
Q 005454 672 RTIILRDSNRFHHFVGGNCS 691 (696)
Q Consensus 672 r~i~~rd~~~~h~f~~g~cs 691 (696)
..|=+.|.+-.|+|+||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45678899999999999864
No 403
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.82 E-value=4.7e+02 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 005454 291 WTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 291 ~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
|..++.-+.+.+.+++|++++..
T Consensus 533 ~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 533 YEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455556666666666666654
No 404
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.12 E-value=1.2e+02 Score=23.61 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=26.4
Q ss_pred hcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 005454 269 QTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307 (696)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 307 (696)
..|+.+.|.++++.++ +.+..|...+.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4567777777777777 6677777777777776665544
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.24 E-value=2.9e+02 Score=26.93 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=33.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhcCCcHHHHHH
Q 005454 396 INGYAQNGQDLEALALYDKLLQENLKPDSF-------TFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~a~~~~g~~~~a~~ 445 (696)
.+-..+.+++++|+..+.+....|+..|.. |...+...|...|+...-.+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 344556788888888888888888766654 44455666666666544433
No 406
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.06 E-value=2.2e+02 Score=30.77 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=21.2
Q ss_pred HhcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHh-hcCChhHHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPI-NAGPYIMLSNMYA-ACGRWEDVASIRS 550 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~ 550 (696)
.+.|=+..|.+..+-++.++|. ||..-..+++.|+ ++.++.--+++++
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444444455555555555544 4444444444443 2333433333333
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.92 E-value=38 Score=25.62 Aligned_cols=45 Identities=9% Similarity=0.140 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHH---HHHHHHhhcCChhHHHHH
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYI---MLSNMYAACGRWEDVASI 548 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~---~l~~~~~~~g~~~~A~~~ 548 (696)
...+.+.|...++++++..++.+.-+. .|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777776655544333 455566777777776665
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.55 E-value=77 Score=29.08 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
.|+..++..++.++...|+.++|.+..+++..+.|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 35555555555555556666666666665555555
No 409
>PRK13342 recombination factor protein RarA; Reviewed
Probab=45.24 E-value=3.9e+02 Score=28.09 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC
Q 005454 391 SWNSMINGYAQ---NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD 438 (696)
Q Consensus 391 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 438 (696)
....+++++.+ .++.+.|+..+..|++.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34445555554 4789999999999999998888766555555554443
No 410
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.89 E-value=82 Score=31.33 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHh-CCC---CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKS-LPH---KP--NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~-~~~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
+|--=.+-|.+..++..|...|.+ +.. .| +.+.|+.-..+-.--||+..+..-..+++.++|.+.-+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 444445678888899999998865 222 23 345677767677778999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHh
Q 005454 536 YAACGRWEDVASIRSSM 552 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m 552 (696)
+....++++|....++.
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999988887766554
No 411
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.25 E-value=1.3e+02 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCC----CChhHHHHHHHHHHh-----CCCchHHHHHH
Q 005454 193 VRNALTDMYAKGGEIDKARWLFDRMNN----RNLVSWNLMISGYLK-----NGQPKKCIDLF 245 (696)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~-----~g~~~~A~~l~ 245 (696)
+...-|-.|+|.|+...+.++-..-.+ .+...|.+++..|.. .|.+++|.++.
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 333344456666666555554433322 233445555544433 35555555544
No 412
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=43.27 E-value=1.4e+02 Score=27.45 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCE
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~ 571 (696)
.....++..|...||++.|-++|--++...+-|... |..=+.++.+.+.-....+.++.|...-.............+.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~~~~~ 121 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYNRRII 121 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhhhhcc
Confidence 355677888888888888888888888777655543 3344455666666555556666664321111000111111223
Q ss_pred EEEEEecCCCC
Q 005454 572 VHKFVSEDRTH 582 (696)
Q Consensus 572 ~~~f~~~~~~~ 582 (696)
.+.|-.|...|
T Consensus 122 ~pvfrsGs~t~ 132 (199)
T PF04090_consen 122 APVFRSGSRTH 132 (199)
T ss_pred cccccCCCccc
Confidence 45677777666
No 413
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=42.19 E-value=1.7e+02 Score=22.96 Aligned_cols=62 Identities=13% Similarity=0.058 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHhhcCChh-HHHHHHHHh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN--AGPYIMLSNMYAACGRWE-DVASIRSSM 552 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~m 552 (696)
|....-.+...+...|+++.|...+-.+++.+|.. ..+-..|+.++...|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44566677777888888888888888888777543 556677777777777643 555555544
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=42.16 E-value=3.3e+02 Score=26.42 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=44.2
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
-|+.....+...|.+.|++.+|+.-|-.-.+++...+..++.-....|...++ |...-..++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 46778888889999999999988877554443333332223222222222222 122222233 345
Q ss_pred cCCcHHHHHHHHHHhHHh
Q 005454 436 HADLFERGQNHFDSISAV 453 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~ 453 (696)
..+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888877766653
No 415
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=41.91 E-value=85 Score=28.29 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcC
Q 005454 406 LEALALYDKLLQENLKPDS-FTFVSVLSACLHA 437 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 437 (696)
++|+.-|++.+. +.|+. .++..+..++...
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 345555555555 66775 6777777766543
No 416
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.59 E-value=9.3e+02 Score=31.43 Aligned_cols=310 Identities=12% Similarity=0.116 Sum_probs=166.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHH----HHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-ccCCChhHHHHHHHHHHhc
Q 005454 227 LMISGYLKNGQPKKCIDLFQEM----QLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-IKEKDNVCWTTMIVGYTQN 301 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~ 301 (696)
++..+-.+.+.+.+|+..++.- .... ....-+-.+...|+.-+++|...-+... ...++. ...|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhh
Confidence 4444556677788888877772 2211 1112233333367777777777666652 333322 2344556678
Q ss_pred CChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHH-HHHHhhHHhcCChHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS-SALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~ 379 (696)
|++..|..-|+.+.+. .|+ ..+++.++......+.+....-..+....... +...-+ +.=+.+--+.+++|....
T Consensus 1463 g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred ccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhhhh
Confidence 9999999999999864 344 66777777777667776666554443333222 222222 222444466777777666
Q ss_pred HHhcCCCCCchHHHHH-H-HHHHHc--CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH------
Q 005454 380 VFNMMPTRNVVSWNSM-I-NGYAQN--GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDS------ 449 (696)
Q Consensus 380 ~~~~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~------ 449 (696)
... ..+..+|.+. + ..+.+. .+.-.-.++.+.+.+.-+.| +.+|+..|.+..+.++.-.
T Consensus 1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHH
Confidence 655 5566666655 2 222221 11111122333333211111 2223333222222222111
Q ss_pred ----hHHhhCCCCCh------HHHHHHHHHHhccCCHHHHHHHHHh------CCC---CCCHHHHHHHHHHHHhcCChHH
Q 005454 450 ----ISAVHGITPSL------DHYACMINLLGRSSDVDKAVDLIKS------LPH---KPNSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 450 ----m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~------~~~---~p~~~~~~~ll~~~~~~g~~~~ 510 (696)
.....+..++. ..|..-+..-....+..+-+--+++ |.. ..-..+|......++..|.++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 11112333332 2222222111111112221111111 110 1234589999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
|..+.-.+.+.. -+..+...+..+...|+-..|..++++-.+...
T Consensus 1689 A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 999887777766 467899999999999999999999998876543
No 417
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.19 E-value=1.3e+02 Score=27.09 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhHHhhCCCCCh-H-----HHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005454 440 FERGQNHFDSISAVHGITPSL-D-----HYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~~-~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 506 (696)
++.|..+|+.+.++...+-+. + .-...+-.|.+.|.+++|.+++++.-..|+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHcc
Confidence 455666666666543211010 1 112234567778888888888887655666555554444444333
No 418
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.87 E-value=51 Score=28.64 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcc--cHHHHHHHHHHccCC
Q 005454 6 KLRQAIDTLYSRGQAATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTT--FLHNRLLHFYAKSGK 74 (696)
Q Consensus 6 ~~~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~ 74 (696)
...++.+.+++.|.++++.-. .+++.+. ..++...|..++..+.+.+|+.+ .+|++| +.+...|-
T Consensus 4 ~~~~~~~~lk~~glr~T~qR~-~vl~~L~--~~~~~~sAeei~~~l~~~~p~islaTVYr~L-~~l~e~Gl 70 (145)
T COG0735 4 TLEDAIERLKEAGLRLTPQRL-AVLELLL--EADGHLSAEELYEELREEGPGISLATVYRTL-KLLEEAGL 70 (145)
T ss_pred hHHHHHHHHHHcCCCcCHHHH-HHHHHHH--hcCCCCCHHHHHHHHHHhCCCCCHhHHHHHH-HHHHHCCC
Confidence 355677888999998886544 3666666 44445788899999988887765 778764 55655553
No 419
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=40.77 E-value=3.1e+02 Score=25.71 Aligned_cols=128 Identities=14% Similarity=0.179 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh-hCCCCChHHHHHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV-HGITPSLDHYACMINLL 470 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~ 470 (696)
.+.-++.+.+.+...+++...++-++.. +.|..+-..+++.++-.|++++|..-++-.-+- -...+....|..+|..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 3445667777888888888887777752 334455666777788888888887666554321 0222334555555542
Q ss_pred hccCCHHHHH-HHHHh--CCC---CCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcCCCCCc
Q 005454 471 GRSSDVDKAV-DLIKS--LPH---KPNSLIWSTLLSVCAMK--GDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 471 ~~~g~~~~A~-~~~~~--~~~---~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
+.+. ++|.. .|. .|...=...|+.+..-+ |..+....+-+..++..|..++
T Consensus 82 ------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 82 ------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred ------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 2222 23322 121 23333233444444333 3455566666777777765443
No 420
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.69 E-value=36 Score=28.80 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=24.1
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 005454 133 NKGFSREALQVFSRMQKDRFEPTDYTHVSALNAC 166 (696)
Q Consensus 133 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 166 (696)
..|.-..|-.+|++|.+.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 345566789999999999999984 56666554
No 421
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.68 E-value=3.2e+02 Score=25.84 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=56.9
Q ss_pred HHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 005454 392 WNSMINGYA--QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469 (696)
Q Consensus 392 ~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 469 (696)
|...+.|+- .++++++|++.+-. ..+.|+.. ..++.++...|+.+.|..++..+.. ...+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHHH
Confidence 444455543 45666666666521 11222222 1356666667777888877765431 11222333333333
Q ss_pred HhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005454 470 LGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g 506 (696)
...|.+.||..+.+....+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 556788888888777664333446666666665443
No 422
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=40.66 E-value=5.6e+02 Score=28.63 Aligned_cols=184 Identities=15% Similarity=0.086 Sum_probs=95.7
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCC---CCCcchHHHHHHHHH-ccCChhHHHHHHhcCC----CCCcc-----hHHH
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMP---LRDIISWNALLSAHA-RSGSVQDLRALFDKMP----IRDSV-----SYNT 126 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~ 126 (696)
.-|..||..-.++ + ..+++... ..+..++-.+.+.+. ...+++.|+..+++.. +++.. .-..
T Consensus 31 ~~Y~kLI~~ai~C--L---~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l 105 (608)
T PF10345_consen 31 KQYYKLIATAIKC--L---EAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFL 105 (608)
T ss_pred HHHHHHHHHHHHH--H---HHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6677777655443 1 12222211 125556666777766 5678999998888653 12111 1234
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCC----CCcchHHHH-HHHHHccCChHHHHHHHHHHHHcC---CCCchhHHHHHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFE----PTDYTHVSA-LNACAQLLDLRRGKQIHGKIVVGN---LGGNVFVRNALT 198 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li 198 (696)
++..+.+.+... |....++..+.--. +-...|..+ +..+...+|...|.+.++.+...- -.+...++-.++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 455666665555 88888877653111 111222222 111222368888888877766542 233444444444
Q ss_pred HHHH--cCCCHHHHHHHHHhcCC-------------CChhHHHHHHHH--HHhCCCchHHHHHHHHHH
Q 005454 199 DMYA--KGGEIDKARWLFDRMNN-------------RNLVSWNLMISG--YLKNGQPKKCIDLFQEMQ 249 (696)
Q Consensus 199 ~~~~--~~g~~~~A~~~~~~~~~-------------~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~ 249 (696)
.+.. +.+..+++.+.++++.. |-..+|..++.. +...|++..+...++++.
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4332 34555556555554411 123456666553 445677667766666554
No 423
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=40.39 E-value=19 Score=18.96 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=8.5
Q ss_pred CchhHHHHHHhh
Q 005454 657 GDCHLFMKFASD 668 (696)
Q Consensus 657 ~~ch~~~k~~s~ 668 (696)
..-|+++|+||-
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 456888888873
No 424
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.99 E-value=90 Score=32.53 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=29.7
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 482 LIKSLPHKPNS--LIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 482 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
+|.....+|.. .++.+-+..+.+++|+..|-...++++++.|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 34444445433 366777788889999999999999999998853
No 425
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=39.53 E-value=8.9 Score=30.14 Aligned_cols=12 Identities=50% Similarity=0.949 Sum_probs=9.6
Q ss_pred cccCCccCCCCC
Q 005454 684 HFVGGNCSCKDN 695 (696)
Q Consensus 684 ~f~~g~csc~~~ 695 (696)
-.+.|.|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 356889999986
No 426
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=39.52 E-value=95 Score=28.47 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=25.6
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 436 HADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
...+.+......+.+.+.....|+...|..++.++...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333344556666666666666666666665555543
No 427
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.08 E-value=6.6e+02 Score=28.95 Aligned_cols=137 Identities=7% Similarity=0.022 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCCh
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKE 304 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 304 (696)
..+.-..+...|+.++.+.+-.-|.. |..++..+...+.+++|++++..-..+... --..-.+ ....+
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~~~el~--yk~ap~L-i~~~p 574 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQRNPELF--YKYAPEL-ITHSP 574 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhccchhhH--HHhhhHH-HhcCc
Confidence 33444455556676666655444433 455666777888888888777665332211 1000001 11223
Q ss_pred hHHHHHHHHhccCCCCCCccchHHHHHHHHhhcC---chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHH
Q 005454 305 EDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS---LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376 (696)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 376 (696)
.+....+..+.+ ..+..-...++..+.+.+. ...+...++.....-...++..+|.++..|++..+-+.
T Consensus 575 ~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~l 646 (911)
T KOG2034|consen 575 KETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDL 646 (911)
T ss_pred HHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccch
Confidence 333333333322 1222233344444444422 23344444444444445688899999999987665443
No 428
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.80 E-value=44 Score=31.22 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=38.8
Q ss_pred HhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 470 LGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
....|+.+.|.+++.+... .| ....|-.+...-.+.|+++.|.+.+++.++++|++.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 4456666677777765432 23 445777777777778888888888888888887654
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.66 E-value=1.7e+02 Score=24.65 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 510 HGEMAARHLFELE--PINAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 510 ~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
.+..+|+.|...+ ...+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777888776644 55566788899999999999999998864
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.90 E-value=47 Score=32.53 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=33.8
Q ss_pred CChhH-HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHH
Q 005454 220 RNLVS-WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSN 262 (696)
Q Consensus 220 ~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 262 (696)
+|..+ ||..|..-.+.|++++|+.++++.++.|+.--..||..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 34443 77999999999999999999999999997655555443
No 431
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=36.74 E-value=5.2e+02 Score=27.12 Aligned_cols=172 Identities=10% Similarity=0.016 Sum_probs=84.0
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCH
Q 005454 128 IAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI 207 (696)
Q Consensus 128 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 207 (696)
|+++...| +.+++.+....... ++...+.....++....+......+.+.+ -.++..+....+.++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCCch
Confidence 55666666 45566555555321 22233333333333222222122222222 234555667777777777776
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 005454 208 DKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD 287 (696)
Q Consensus 208 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 287 (696)
+....+..-....+.......+.++...+. .+...+....+ .+|...-..-+.++...++.+....+-..+...|
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~ 191 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRLSESTLRLYLRDSD 191 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhccccchHHHHHHHcCCC
Confidence 666655555555555554445555554332 12333333332 3455555555566665555444443333344555
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHH
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNE 313 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~ 313 (696)
...-..-+.+....|. .+|...+..
T Consensus 192 ~~VR~aA~~al~~lG~-~~A~~~l~~ 216 (410)
T TIGR02270 192 PEVRFAALEAGLLAGS-RLAWGVCRR 216 (410)
T ss_pred HHHHHHHHHHHHHcCC-HhHHHHHHH
Confidence 5555555666666666 455555444
No 432
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.54 E-value=1.3e+02 Score=20.18 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
.+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777776666666655553
No 433
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.52 E-value=4.6e+02 Score=26.41 Aligned_cols=114 Identities=12% Similarity=0.121 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc---cCCHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR---SSDVDKAVDL 482 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 482 (696)
+.-+.++++.++.+ +-+......++..+.+....++..+-|+.+...+ +-+...|...++.... .-.+++..++
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 44556667766652 2334455556666666666677677777776531 2244555555554332 2234444444
Q ss_pred HHh-------CCCC--------C--CHHHH---HHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 483 IKS-------LPHK--------P--NSLIW---STLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 483 ~~~-------~~~~--------p--~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
|.+ .... | +.... ..+..-+...|..+.|..+++-+++++
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 432 1111 1 11122 222333467899999999999999987
No 434
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=36.43 E-value=2.4e+02 Score=27.41 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+=.++...++++.|....++.+.++|.++....--+-+|.+.|-..-|.+-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 44456778889999999999999999999998888899999999999999988876544
No 435
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.00 E-value=1.7e+02 Score=31.04 Aligned_cols=88 Identities=18% Similarity=0.266 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--------CCchHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--------NAGPYIM 531 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--------~~~~~~~ 531 (696)
+..|...+.-|+..+++++|.++-+-.. +...|.+|......+.+..-++.+|..+.+.+.- -+.--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3446666777788888888888877665 5567888887777788887777777776665421 1122234
Q ss_pred HHHHHhhcCChhHHHHHHH
Q 005454 532 LSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~ 550 (696)
++....-.|+..||.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4445556677777776664
No 436
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.71 E-value=42 Score=28.40 Aligned_cols=33 Identities=24% Similarity=0.484 Sum_probs=25.1
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
-..|.-.+|..+|++|++.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999985 55666543
No 437
>PF15469 Sec5: Exocyst complex component Sec5
Probab=35.60 E-value=3.4e+02 Score=24.56 Aligned_cols=25 Identities=16% Similarity=0.460 Sum_probs=17.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 429 SVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
.-|.-|...|+++.+...|.++...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 3455667778888887777776653
No 438
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.57 E-value=1.1e+02 Score=20.56 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=27.4
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 265 (696)
...+.|-..++..++++|.+.|+..+...+..+++
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888889999999999998888777776654
No 439
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=35.57 E-value=72 Score=24.63 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCCh
Q 005454 81 LFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFS 137 (696)
Q Consensus 81 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 137 (696)
+++.+...++.+....-...+...+.+.|.++++.++.+...+|.....++-..|..
T Consensus 21 v~~~L~~~~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 21 LWDHLLSRGVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred HHHHHHhcCCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 333334444444444444444555566666666666666666666666666555543
No 440
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.10 E-value=6.5e+02 Score=27.73 Aligned_cols=246 Identities=11% Similarity=0.024 Sum_probs=112.9
Q ss_pred hcCChhHHHHHHHHhcc-------CCCCCCccchHHHHHHHHhhc-----CchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 300 QNGKEEDALILFNEMLS-------EDVRPDKFSISSVVSSCAKLA-----SLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...+.+.|+..|+.+.. .| +.....-+..+|.+.. +.+.|..++....+.|.+ +....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 44556666666665544 33 2223334444444422 345566666666666543 22222222211
Q ss_pred HHh-cCChHHHHHHHhcCCC-CCchHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 368 YCK-CGVTDDAWTVFNMMPT-RNVVSWNSMINGYA----QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 368 y~~-~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
... ..+...|.++|..... ..+.+.-.+..+|. ...+...|..++.+..+.| .|-..--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 2345667777765543 23333333322222 2345667777777777766 3332222223333333 5555
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHH-----hc--cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLL-----GR--SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKH 510 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 510 (696)
.+.-.+..+.. .+.+--...-..+.+.. .+ ..+.+.+..++.+...+-+......|...|.. ..+.+.
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 55444444433 12221111111111111 11 22445555555555444444444444444332 235666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHhhc---CChhHHHHHHHHhhhC
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNMYAAC---GRWEDVASIRSSMKSK 555 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 555 (696)
|...+.++.+.. +.....++.++-.. ..+..|.++++...+.
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 766666666554 44555555555331 1257777777766553
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.87 E-value=86 Score=22.49 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 428 VSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
..++.++...|++++|.++.+.+..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555555555555555555543
No 442
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.56 E-value=4.5e+02 Score=26.49 Aligned_cols=64 Identities=9% Similarity=-0.060 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh---cCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA---CGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~ 554 (696)
+...+..++..+.+.-+.+...+-+++++...|.++..|..+++.... .-.+++...+|.+...
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 455677777777777788888888888888888888887777666544 3356677777665543
No 443
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=33.51 E-value=2.3e+02 Score=21.93 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=29.6
Q ss_pred HhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHH
Q 005454 268 FQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDA 307 (696)
Q Consensus 268 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 307 (696)
+...+.+.+.++++.++.++..+|.....++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3455678888888888888888888888888777655433
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=33.21 E-value=81 Score=30.98 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL 431 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 431 (696)
-||..|..-.+.|++++|+.++++..+.|+.--..||..-+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 56788999999999999999999999998766556665544
No 445
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.18 E-value=1.6e+02 Score=24.80 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=13.5
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMP 86 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~ 86 (696)
.+-..-+++|-+-+|+..|.++|+-+.
T Consensus 85 kvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 85 KVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 444444455555555555555555443
No 446
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.90 E-value=4.4e+02 Score=25.08 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=33.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc
Q 005454 211 RWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE 257 (696)
Q Consensus 211 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 257 (696)
..+|.-..+|.+.....|+..+. .+++++|.+++.++-+.|..|..
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 34454455577776777776554 57899999999999999987754
No 447
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.46 E-value=5.9e+02 Score=26.42 Aligned_cols=156 Identities=14% Similarity=0.011 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCCC------CcchHHHHHHHHHccCChhHHHHHHhcCCC-------------CC
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPLR------DIISWNALLSAHARSGSVQDLRALFDKMPI-------------RD 120 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-------------~~ 120 (696)
..+.-+.+.|..+|+++.|.+.+.+...= -+..|-.+|..-.-.|+|......-.+... +-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 57788889999999999999999995531 122233333333334555444433333221 11
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCC------CCCCcchHHHHHHHHHccCChHHHHHHHHHHH-HcCCCCchhH
Q 005454 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDR------FEPTDYTHVSALNACAQLLDLRRGKQIHGKIV-VGNLGGNVFV 193 (696)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~ 193 (696)
...+..+... ..+++..|...|-.....- +.|...+....+.+++..+.-+.-..+..... +.=++..+.+
T Consensus 231 l~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 2223333332 2336666766664443211 34555544455555544433222212111100 0012334555
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 194 RNALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
...|...| .+++....++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 55555555 3667777777777754
No 448
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=32.37 E-value=1.2e+02 Score=29.55 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCchHHHHHHHHHHH-----cCCCCCcc
Q 005454 193 VRNALTDMYAKGGEIDKARWLFDRMNNR---NLVSWNLMISGYLKNGQPKKCIDLFQEMQL-----LGLNPDEV 258 (696)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 258 (696)
+.+.....|..+|.+.+|.++-++...- +...|-.++..++..|+--.|..-++.+.+ .|+..|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 4556677888999999999988887763 445688889999999998888877777743 35554443
No 449
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.10 E-value=3.4e+02 Score=29.85 Aligned_cols=85 Identities=11% Similarity=0.037 Sum_probs=62.5
Q ss_pred hccCCHHHHHHHHHh-CCCCC-----C--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh
Q 005454 471 GRSSDVDKAVDLIKS-LPHKP-----N--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~-~~~~p-----~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 542 (696)
.+..++..+.++|+. +..-| + ......|.-+|....+.+.|.++++++-+.+|.++..-..+..+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 355667777777653 32211 1 224566666677778899999999999999999888888888888899999
Q ss_pred hHHHHHHHHhhhC
Q 005454 543 EDVASIRSSMKSK 555 (696)
Q Consensus 543 ~~A~~~~~~m~~~ 555 (696)
++|+......+..
T Consensus 445 e~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 445 EEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHhh
Confidence 9999888777654
No 450
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=32.09 E-value=5.2e+02 Score=25.74 Aligned_cols=98 Identities=12% Similarity=-0.024 Sum_probs=63.8
Q ss_pred CcHHHHHHHHHHhHHhhCC---CCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGI---TPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA 514 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 514 (696)
+-.++|.+.|+.......- ..+......+.....+.|..++-..+++.....++...-..++.+.....+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 3467888888888763112 3455666677777788888777666666666666788888999999999999999999
Q ss_pred HHHHHhcC-CCCCchHHHHHHH
Q 005454 515 ARHLFELE-PINAGPYIMLSNM 535 (696)
Q Consensus 515 ~~~~~~~~-p~~~~~~~~l~~~ 535 (696)
++.++.-+ -.....+..+..+
T Consensus 224 l~~~l~~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 224 LDLLLSNDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHCTSTS-TTTHHHHHHHH
T ss_pred HHHHcCCcccccHHHHHHHHHH
Confidence 99998843 2233344444444
No 451
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=5.1e+02 Score=25.55 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=77.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHhCCCCC------CHHHH--HHHHHHHHhcCChHHHHHHHHHHHhcC---CC----CCch
Q 005454 464 ACMINLLGRSSDVDKAVDLIKSLPHKP------NSLIW--STLLSVCAMKGDIKHGEMAARHLFELE---PI----NAGP 528 (696)
Q Consensus 464 ~~li~~~~~~g~~~~A~~~~~~~~~~p------~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~ 528 (696)
.-|...+-.+|++++|.+++...|.+. +..+- .--+..|...+|+-.|-...+++.+.. |+ ....
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlky 214 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKY 214 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 446677888999999999998877531 11111 112456788999999988877776643 22 1235
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEec
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSE 578 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~ 578 (696)
|..+..+......+-+|.++++..-.....+.....|-.+-..+..|+.-
T Consensus 215 YeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~iL 264 (439)
T COG5071 215 YELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFALL 264 (439)
T ss_pred HHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeEEe
Confidence 77777777777788888877777755554444445677776666677643
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=31.76 E-value=7.4e+02 Score=27.38 Aligned_cols=215 Identities=12% Similarity=0.067 Sum_probs=57.6
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH-HHHHh--cCC-----------CCCchHHHHHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA-WTVFN--MMP-----------TRNVVSWNSMIN 397 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A-~~~~~--~~~-----------~~~~~~~~~li~ 397 (696)
...-.|++..+.+....... |..+...+.+.+.++|-++.. ..-+. .+. -.+...|..-+.
T Consensus 306 ~~i~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~ 380 (566)
T PF07575_consen 306 LAIFEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIG 380 (566)
T ss_dssp HHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 34446777777666554322 444555666666666665510 00000 000 012223444444
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVD 477 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 477 (696)
.+...++.. ....+.++..-.-.+......++..|.+.|..+.+.++.+.+-.+. -....|..-+.-+.++|+..
T Consensus 381 yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~ 455 (566)
T PF07575_consen 381 YLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYS 455 (566)
T ss_dssp HHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH------
T ss_pred HHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHH
Confidence 333333222 4444444443223345566777788888888888888877665431 11223444444444555443
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCCCchHHHHHHHH--hhcCChhHHHHHHHHhh
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL--EPINAGPYIMLSNMY--AACGRWEDVASIRSSMK 553 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 553 (696)
....+ +| .++..|...|... ...+.+.+..- -.+....|..+-..| .+.|++.+|.+.+-.+.
T Consensus 456 ~v~~i-----------~~-~ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll 522 (566)
T PF07575_consen 456 LVTRI-----------AD-RLLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLL 522 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-----------HH-HHHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33222 22 2333444444321 11111111000 011122233333332 34588888887776665
Q ss_pred hCCCcCCCceeEEEECCE
Q 005454 554 SKNVKKFAAYSWIEIDNK 571 (696)
Q Consensus 554 ~~~~~~~~~~s~i~~~~~ 571 (696)
...+ .|..-|..+-..
T Consensus 523 ~~~~--~Pk~f~~~LL~d 538 (566)
T PF07575_consen 523 KSPI--APKSFWPLLLCD 538 (566)
T ss_dssp ------------------
T ss_pred CCCC--CcHHHHHHHHHH
Confidence 5444 344556544333
No 453
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.51 E-value=72 Score=29.90 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=50.7
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
....+|.+.+.+++.+++++-|+....|..++..--++|+.+.|.+-+++..+-..
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 35678999999999999999999999999999999999999999999998877543
No 454
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=30.91 E-value=8.7e+02 Score=27.92 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=43.2
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhc----CChHH---HHHHHHHHHhcCCCCCc-----hHHH
Q 005454 467 INLLGRSSDVDKAVDLIKSLPHKPNSL--IWSTLLS-VCAMK----GDIKH---GEMAARHLFELEPINAG-----PYIM 531 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~~p~~~--~~~~ll~-~~~~~----g~~~~---a~~~~~~~~~~~p~~~~-----~~~~ 531 (696)
.+-.-..|.+++|..++...+ ++|.. +.+.+++ +.... .+.+. -......+.+-+|.++. ++..
T Consensus 629 A~~a~~~G~~~~sI~LY~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~l 707 (835)
T KOG2168|consen 629 ASEADEDGLFEDAILLYHLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLSL 707 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHHH
Confidence 344556677777777776655 22322 2233332 11111 11121 12222333444444433 3445
Q ss_pred HHHH-----HhhcCChhHHHHHHHHhh
Q 005454 532 LSNM-----YAACGRWEDVASIRSSMK 553 (696)
Q Consensus 532 l~~~-----~~~~g~~~~A~~~~~~m~ 553 (696)
|.+. ....|+|++|+..++...
T Consensus 708 Ll~~~~~f~~y~~~~~e~aL~~le~l~ 734 (835)
T KOG2168|consen 708 LLDLVSFFDLYHNGEWEEALSILEHLD 734 (835)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 5544 457899999999988764
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=30.90 E-value=4.5e+02 Score=25.05 Aligned_cols=56 Identities=5% Similarity=-0.001 Sum_probs=30.9
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh-hcCchhHHHHHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKA 349 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~ 349 (696)
++..+-+.|+++++...++++...+...+..--+.+-.+|-. .|....+..++..+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 556667778888888888888777665555444444444432 23333444444443
No 456
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.71 E-value=1e+03 Score=28.62 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=13.8
Q ss_pred HHhhHHhcCChHHHHHHHhcC
Q 005454 364 LIDMYCKCGVTDDAWTVFNMM 384 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~ 384 (696)
+..+|..+|...+|...|.+.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a 946 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSA 946 (1480)
T ss_pred hheeeecCCchHHHHHHHHHH
Confidence 334566777777777777654
No 457
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=30.49 E-value=15 Score=25.43 Aligned_cols=11 Identities=45% Similarity=0.924 Sum_probs=8.3
Q ss_pred cccccCchhHH
Q 005454 652 NIRVCGDCHLF 662 (696)
Q Consensus 652 n~~~c~~ch~~ 662 (696)
-.-||+|||.-
T Consensus 19 miYiCgdC~~e 29 (62)
T KOG3507|consen 19 MIYICGDCGQE 29 (62)
T ss_pred EEEEecccccc
Confidence 35789999953
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.99 E-value=1.6e+02 Score=23.49 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=27.7
Q ss_pred HHHHHHHHhcC-CCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 512 EMAARHLFELE-PINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 512 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
++.++++-..+ +..|+.+..|+-+|++.|+-|.|.+-|+.=
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 33444443333 555777888888888888888888877643
No 459
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.55 E-value=8.3e+02 Score=27.28 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHhhccCchhHHHHHHHhhhhh-ccCCCcc---cHHHHHHHHHH-ccCChHHHHHHHccCCC----CC--
Q 005454 21 ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLN-FYEPNTT---FLHNRLLHFYA-KSGKLFYARDLFDKMPL----RD-- 89 (696)
Q Consensus 21 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~---~~~~~li~~~~-~~g~~~~a~~~~~~~~~----~~-- 89 (696)
.+...|..||+... .....+. +..++|. .++-.+...+. ...+++.|+..+++... ++
T Consensus 28 ~~l~~Y~kLI~~ai-----------~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~ 96 (608)
T PF10345_consen 28 EQLKQYYKLIATAI-----------KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLT 96 (608)
T ss_pred hhHHHHHHHHHHHH-----------HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34556777765433 3333333 3334433 55666677666 56789999998887632 11
Q ss_pred ---cchHHHHHHHHHccCChhHHHHHHhcCCC----CCcchHHHHH-----HHHHhCCChhHHHHHHHHhHHCC---CCC
Q 005454 90 ---IISWNALLSAHARSGSVQDLRALFDKMPI----RDSVSYNTAI-----AGFANKGFSREALQVFSRMQKDR---FEP 154 (696)
Q Consensus 90 ---~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g---~~p 154 (696)
-.....++..|.+.+... |.+..++..+ .....|.-.. ..+...+++..|++.++.....- ..|
T Consensus 97 d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~ 175 (608)
T PF10345_consen 97 DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDP 175 (608)
T ss_pred HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCH
Confidence 112335667777777655 8777776542 1122333222 22233479999999998886532 344
Q ss_pred CcchHHHHHHHHH--ccCChHHHHHHHHHHHHcCC---------CCchhHHHHHHHH--HHcCCCHHHHHHHHHhc
Q 005454 155 TDYTHVSALNACA--QLLDLRRGKQIHGKIVVGNL---------GGNVFVRNALTDM--YAKGGEIDKARWLFDRM 217 (696)
Q Consensus 155 ~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~ 217 (696)
-...+..++.+.. ..+..+.+.+..+.+..... .|...++..+++. +...|+++.+...++++
T Consensus 176 ~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 176 AVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666654 33445556565555533221 2345566666654 44577777776665554
No 460
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.54 E-value=4.6e+02 Score=24.24 Aligned_cols=35 Identities=11% Similarity=0.027 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF 425 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 425 (696)
...+.++..+...|+++.|-+.|--++... ..|..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 466788888999999999999999998753 44543
No 461
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=29.51 E-value=16 Score=27.13 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=10.9
Q ss_pred ecccccCchhHHHH
Q 005454 651 KNIRVCGDCHLFMK 664 (696)
Q Consensus 651 kn~~~c~~ch~~~k 664 (696)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 34599999999864
No 462
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=28.44 E-value=67 Score=24.31 Aligned_cols=26 Identities=38% Similarity=0.581 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCCCcc
Q 005454 586 EIIYEELSKLIKKLQEAGFSPNTKLV 611 (696)
Q Consensus 586 ~~i~~~l~~l~~~m~~~g~~~~~~~~ 611 (696)
.++...+++..++++..|+.||...+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45677888889999999999997665
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=28.35 E-value=3.4e+02 Score=24.27 Aligned_cols=63 Identities=16% Similarity=0.017 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 005454 210 ARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272 (696)
Q Consensus 210 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 272 (696)
+.++++...-+.+..-..++..+...+..-.|.++++.+.+.+..++..|.--.|..+...|-
T Consensus 13 ~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333443333333444445555555566677788888888887776676666556666655553
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.29 E-value=1.5e+03 Score=29.79 Aligned_cols=114 Identities=10% Similarity=0.101 Sum_probs=75.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHhc----CCCCh--hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005454 196 ALTDMYAKGGEIDKARWLFDRM----NNRNL--VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQ 269 (696)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 269 (696)
.|..+=.+|+.+..|...+++- .+.+. .-+-.+...|..-+++++..-+...-.. + ..+..-+-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~-~sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----D-PSLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----C-ccHHHHHHHHHh
Confidence 4555677899999999999883 22221 2344455588899999887776653111 1 123334445678
Q ss_pred cCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCChhHHHHHHHHhc
Q 005454 270 TGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGKEEDALILFNEML 315 (696)
Q Consensus 270 ~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 315 (696)
.|+++.|...|+.+.+.+ ..+++-++......|.++.++-..+-..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 899999999999998543 4567777777667777777666444433
No 465
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=28.24 E-value=6.8e+02 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.030 Sum_probs=16.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDS 424 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~ 424 (696)
.+.+.+++..|.++|+++.+..++|..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhh
Confidence 344566777777777777665444443
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.15 E-value=91 Score=22.36 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
.+|.||.+.|++++|.+..+++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 467788888888888888877654
No 467
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=27.85 E-value=3.9e+02 Score=26.48 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=29.2
Q ss_pred HHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 265 GACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 265 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..+-+..++......+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 106 ~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 106 RLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 33444444444444444432 223334456777788999999988887764
No 468
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.83 E-value=5.9e+02 Score=27.57 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHhcCCC--Ch---hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 005454 195 NALTDMYAKGGEIDKARWLFDRMNNR--NL---VSWNLMISGYLKNGQPKKCIDLFQEMQ 249 (696)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~l~~~m~ 249 (696)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+.+.+.+..--.+....++.+.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~al 471 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAAL 471 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 35777899999999999999988621 11 233444445555443444444444443
No 469
>PF14376 Haem_bd: Haem-binding domain
Probab=27.61 E-value=18 Score=31.06 Aligned_cols=8 Identities=50% Similarity=1.119 Sum_probs=6.5
Q ss_pred cccCchhH
Q 005454 654 RVCGDCHL 661 (696)
Q Consensus 654 ~~c~~ch~ 661 (696)
+-|.||||
T Consensus 42 ~~CydCHS 49 (137)
T PF14376_consen 42 NSCYDCHS 49 (137)
T ss_pred ccccccCC
Confidence 45999995
No 470
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=27.38 E-value=2.9e+02 Score=26.08 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
.+...|+.++..+..++|+..+...+.+.+.
T Consensus 13 ~~~~~w~~i~~~F~~~~~v~~~~~~l~r~f~ 43 (228)
T PF05734_consen 13 ENEEEWRNILSNFSTHGNVSATLRSLRRIFK 43 (228)
T ss_pred hhHHHHHHHHHHhhcCCCHHHHHHHHHHHhc
Confidence 3556888888888889999888888888877
No 471
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=27.24 E-value=8e+02 Score=26.31 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=58.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCA--MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
-+.+++-+.+.|-..+|...+.++.. +|+...+..++.--. ..-+...+.+.++.++.-...++..|......-..
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 35567777788888888888877644 345556666554221 22236667777777766555677777766666667
Q ss_pred cCChhHHHHHHHHh
Q 005454 539 CGRWEDVASIRSSM 552 (696)
Q Consensus 539 ~g~~~~A~~~~~~m 552 (696)
.|+.+.+-.++-+.
T Consensus 543 ~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 543 LGRPENCGQIYWRA 556 (568)
T ss_pred CCCcccccHHHHHH
Confidence 77777666665443
No 472
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=27.03 E-value=4.2e+02 Score=24.98 Aligned_cols=91 Identities=13% Similarity=0.211 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 005454 392 WNSMINGYAQNGQDLEALALYDKLLQENLKP---DSFTF--VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466 (696)
Q Consensus 392 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 466 (696)
.|.|+--|.-+..+.+|.+.|..- .|+.| |..++ ..-+......|++++|++...+.... -+.-|.+.+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 445555454444445555444332 22333 22222 22334445666667666666555432 222332222111
Q ss_pred H----HHHhccCCHHHHHHHHHh
Q 005454 467 I----NLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 467 i----~~~~~~g~~~~A~~~~~~ 485 (696)
. --+.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 1 113567778888888765
No 473
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.39 E-value=86 Score=30.68 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=32.8
Q ss_pred hccCCHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 471 GRSSDVDKAVDLIKS-LPHKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~-~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
.+.|+.++|..+|+. +...|+. .+..-+..-...++++-+|.+.+-+++...|.+..+.
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 356666666666654 2233332 2333333333445666677777777777777666543
No 474
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.10 E-value=3.5e+02 Score=29.84 Aligned_cols=46 Identities=15% Similarity=0.106 Sum_probs=24.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhcCCc
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQEN--LKPDSFTFVSVLSACLHADL 439 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~ 439 (696)
++..+|..+|++..+.++++.....+ -+.=...++..++...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 55666666666666666666665532 11112344555555555554
No 475
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=25.91 E-value=1.4e+02 Score=23.43 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=26.5
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCC
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKG 135 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 135 (696)
++.+-...-...+..-+.+.+.++++.++.+...+|..+..++-..+
T Consensus 33 gvlt~~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 33 DILTDSMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CCCCHHHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 33343333334444455666667777666666666666666664433
No 476
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=25.70 E-value=4.1e+02 Score=22.43 Aligned_cols=56 Identities=14% Similarity=-0.017 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLI-WSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~ 515 (696)
..+..++.-++.=.|..++|.+++......++-.. -.-++..|....+-++..++-
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q 122 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQ 122 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34444555555566666666666666655444332 234555555555554444443
No 477
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=25.49 E-value=5.3e+02 Score=23.67 Aligned_cols=175 Identities=14% Similarity=0.084 Sum_probs=0.0
Q ss_pred HcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC------------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHc
Q 005454 184 VGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN------------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL 251 (696)
Q Consensus 184 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 251 (696)
+.|..++...++.++..+....-...-...+-.|.. -|..+.-.-+..|-+.|++.+--.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHH-----HHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccch
Q 005454 252 GLNPDEVTVSNILGACFQTGRIDD-----AGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSI 326 (696)
Q Consensus 252 g~~p~~~t~~~ll~~~~~~g~~~~-----A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 326 (696)
+-+.++++. |+.+....+++..+.|-.....-++.-+.+++-+.|--=. -
T Consensus 81 ---------------ce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRi----------G 135 (233)
T PF14669_consen 81 ---------------CEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRI----------G 135 (233)
T ss_pred ---------------cCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHH----------H
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHh--------------CCCCchHHHHHHHhhHHhcCChHHHHHHHhc
Q 005454 327 SSVVSSCAKLASLYHGQVVHGKAVVL--------------GVDDDLLVSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
.+++-.|.+..++..++.++..+.+. +..+.-.+.|.....+.++|.+|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 478
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.39 E-value=2.5e+02 Score=23.64 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=30.0
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 511 GEMAARHLFELE--PINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 511 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
...+|..|...+ ..-+..|...+..+-..|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456677776544 4455668888888999999999998885
No 479
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=25.28 E-value=6.5e+02 Score=24.62 Aligned_cols=77 Identities=13% Similarity=-0.014 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC-------------
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCA----MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG------------- 540 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------- 540 (696)
.|...+.+.-..-+......|...|. ...|.++|...++++-+.+. ......++ .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~ 249 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAK 249 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhccccc
Confidence 45555554332223333333332222 23367777777777777665 44455555 455444
Q ss_pred --ChhHHHHHHHHhhhCCC
Q 005454 541 --RWEDVASIRSSMKSKNV 557 (696)
Q Consensus 541 --~~~~A~~~~~~m~~~~~ 557 (696)
+...|...+......+.
T Consensus 250 ~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 250 EEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 56666666666655443
No 480
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.07 E-value=4.4e+02 Score=22.85 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 005454 222 LVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271 (696)
Q Consensus 222 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 271 (696)
+..-..++..+.+.+..-.|.++++++.+.+...+..|.-..|..+...|
T Consensus 20 T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 20 TPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33445666677777777778888888887766555555544444444444
No 481
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.80 E-value=4.2e+02 Score=22.27 Aligned_cols=44 Identities=9% Similarity=0.156 Sum_probs=27.3
Q ss_pred chHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHH
Q 005454 238 PKKCIDLFQEMQLLGLNPDE-VTVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 238 ~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
.+.+.++|..|...|+--.. .-|......+...|++++|.++|.
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34888899999888765443 334444455556666666666654
No 482
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.47 E-value=7.1e+02 Score=24.77 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=23.8
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC-CCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
++.....+.....+.|+.+.-..+++.... ++......++.+++...+.+...++++....
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 333444444444444444433333333322 2333344444444444444444444444444
No 483
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=23.81 E-value=4.3e+02 Score=28.78 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=87.0
Q ss_pred CCCHHHHHHHHHHHhcC--CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-ccCCHHHHHHHHHhC-CCCCC--HHH
Q 005454 421 KPDSFTFVSVLSACLHA--DLFERGQNHFDSISAVHGITPSLDHYACMINLLG-RSSDVDKAVDLIKSL-PHKPN--SLI 494 (696)
Q Consensus 421 ~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~~-~~~p~--~~~ 494 (696)
-|+..|...++.-...- ..-+-|-.++..|.. .+.|-=...| +..+|- -.|+...|...+... ..+|. .+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 46666665555433322 223445555555543 3334322222 234444 478888888877653 33442 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.-.|.....+.|-...|..++.+.+.+....|-++..++++|....+.+.|++-++...+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44566666777777889999999999988888899999999999999999999998776543
No 484
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=23.71 E-value=34 Score=23.46 Aligned_cols=9 Identities=44% Similarity=0.903 Sum_probs=8.3
Q ss_pred ccCCccCCC
Q 005454 685 FVGGNCSCK 693 (696)
Q Consensus 685 f~~g~csc~ 693 (696)
|..|+|||.
T Consensus 14 fg~GsrsC~ 22 (56)
T KOG3506|consen 14 FGQGSRSCR 22 (56)
T ss_pred cCCCCccee
Confidence 999999995
No 485
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.55 E-value=4.6e+02 Score=29.01 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHc
Q 005454 227 LMISGYLKNGQPKKCIDLFQEMQLL 251 (696)
Q Consensus 227 ~li~~~~~~g~~~~A~~l~~~m~~~ 251 (696)
+|..+|..+|++..+.++++.....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~ 57 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDH 57 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC
Confidence 5666777777777777766666543
No 486
>PRK10941 hypothetical protein; Provisional
Probab=23.48 E-value=7e+02 Score=24.37 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=26.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcCCcHHHHHHHHHHhH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSF-TFVSVLSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 451 (696)
+.+-.+|.+.++++.|+...+.+.. +.|+.. -+.--...+.+.|.+..|..=++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4444555556666666666665555 344422 22222223444444444444444443
No 487
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=22.99 E-value=36 Score=20.20 Aligned_cols=8 Identities=38% Similarity=0.850 Sum_probs=4.9
Q ss_pred CccCCCCC
Q 005454 688 GNCSCKDN 695 (696)
Q Consensus 688 g~csc~~~ 695 (696)
+.|||.++
T Consensus 4 pRCsC~s~ 11 (31)
T PF00322_consen 4 PRCSCASW 11 (31)
T ss_dssp --ECCSSS
T ss_pred cceecCCC
Confidence 57999875
No 488
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.97 E-value=3.5e+02 Score=24.23 Aligned_cols=33 Identities=6% Similarity=-0.007 Sum_probs=14.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch
Q 005454 126 TAIAGFANKGFSREALQVFSRMQKDRFEPTDYT 158 (696)
Q Consensus 126 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 158 (696)
.++..+...+..-.|.++++++.+.+..++..|
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 333333333344444444544444443333333
No 489
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.80 E-value=4.6e+02 Score=21.98 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=14.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHh
Q 005454 531 MLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.-+.++...|+.++|.+.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 4455677788888888887643
No 490
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=22.69 E-value=1.1e+03 Score=26.16 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 271 GRIDDAGRLFHVIKEKD-NVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 271 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
=+.++-.++++++.. . ...|..++++....|-.....-+.+.+..
T Consensus 323 ~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 323 LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 344555555555444 2 45666777777777765554444444443
No 491
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=6.9e+02 Score=23.93 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=54.6
Q ss_pred hcCChHHHHHHHhcCC--CCCc-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhcCCcHHHHHH
Q 005454 370 KCGVTDDAWTVFNMMP--TRNV-VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVL-SACLHADLFERGQN 445 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~ 445 (696)
...+++.|+..|.+.. .|++ .-|+.-+.++.+..+++.+.+--.+.++ +.||.+--...+ .+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3345566666555443 4555 4566677888888899888888887777 788876444443 45567777888888
Q ss_pred HHHHhH
Q 005454 446 HFDSIS 451 (696)
Q Consensus 446 ~~~~m~ 451 (696)
.+.+..
T Consensus 100 ~Lqra~ 105 (284)
T KOG4642|consen 100 VLQRAY 105 (284)
T ss_pred HHHHHH
Confidence 887764
No 492
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.34 E-value=2.8e+02 Score=26.67 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=7.4
Q ss_pred HHHHHHHhcCChHHHHH
Q 005454 497 TLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~ 513 (696)
.+..++...|+.+....
T Consensus 223 ~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 223 RLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHhCCHHHHHH
Confidence 33344444455444433
No 493
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=22.27 E-value=1.9e+02 Score=22.93 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=27.3
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCcCCCCccc
Q 005454 579 DRTHPETEIIYEELSKLIKKLQEAGFSPNTKLVL 612 (696)
Q Consensus 579 ~~~~p~~~~i~~~l~~l~~~m~~~g~~~~~~~~~ 612 (696)
-..||.....-....++.+-..+.|..|....-+
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl 90 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKL 90 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhc
Confidence 4679988888788888888889999998765544
No 494
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=22.27 E-value=8.3e+02 Score=24.77 Aligned_cols=85 Identities=16% Similarity=0.120 Sum_probs=37.1
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA-LALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
+.+..++.++.+.+..+-+.+..-......++..++-...-.+.. ..+++.+... ||......++++.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 344445555444444444444332223333343333333322222 2233333332 666666666666665554444
Q ss_pred HHHHHHHhH
Q 005454 443 GQNHFDSIS 451 (696)
Q Consensus 443 a~~~~~~m~ 451 (696)
....++.+.
T Consensus 249 ~~~~i~~~L 257 (340)
T PF12069_consen 249 VAILIDALL 257 (340)
T ss_pred HHHHHHHHh
Confidence 444344443
No 495
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.21 E-value=9e+02 Score=25.16 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC------CCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT------RNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
....-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3455678889999999999999988653 1233566666666666777776666655554
No 496
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=22.17 E-value=2.8e+02 Score=28.52 Aligned_cols=61 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChH---HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 492 SLIWSTLLSVCAMKGDIK---HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
..+-..++..+...++.+ +|..+++..+...|.|...-..|+.+|...|-.+.|.+.+..+
T Consensus 180 lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 180 LLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
No 497
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.07 E-value=8.9e+02 Score=25.06 Aligned_cols=18 Identities=6% Similarity=-0.320 Sum_probs=8.8
Q ss_pred HHhcCChHHHHHHHhcCC
Q 005454 368 YCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~ 385 (696)
+.+.+++..|.++|+.+.
T Consensus 140 l~n~~dy~aA~~~~~~L~ 157 (380)
T TIGR02710 140 AINAFDYLFAHARLETLL 157 (380)
T ss_pred HHHhcChHHHHHHHHHHH
Confidence 334455555555555444
No 498
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=21.44 E-value=6.2e+02 Score=26.44 Aligned_cols=55 Identities=15% Similarity=0.230 Sum_probs=38.9
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCC-----------CCCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMP-----------TRNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
..|++.++-.|++..|.++++.+. .-.+.++.-+.-+|...+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777788888877776554 1244466667778888888888888887654
No 499
>PHA02875 ankyrin repeat protein; Provisional
Probab=21.19 E-value=9.4e+02 Score=25.01 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=10.5
Q ss_pred HHHHHHHccCChHHHHHHHcc
Q 005454 64 RLLHFYAKSGKLFYARDLFDK 84 (696)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~ 84 (696)
+.+...++.|+.+-+.-+++.
T Consensus 37 tpL~~A~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 37 SPIKLAMKFRDSEAIKLLMKH 57 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHhC
Confidence 334444555665555544443
No 500
>PF03128 CXCXC: CXCXC repeat; InterPro: IPR004153 This repeat contains the conserved pattern CXCXC where X can be any amino acid. The repeat is found in up to five copies in Vascular endothelial growth factor C []. In the salivary glands of the dipteran Chironomus tentans, a specific messenger ribonucleoprotein (mRNP) particle, the Balbiani ring (BR) granule, can be visualized during its assembly on the gene and during its nucleocytoplasmic transport. This repeat is found over 70 copies in the balbiani ring protein 3 (Q03376 from SWISSPROT). It is also found in some silk proteins [].
Probab=20.84 E-value=51 Score=15.71 Aligned_cols=9 Identities=22% Similarity=0.981 Sum_probs=7.0
Q ss_pred ccCCccCCC
Q 005454 685 FVGGNCSCK 693 (696)
Q Consensus 685 f~~g~csc~ 693 (696)
|.+.+|+|+
T Consensus 4 wn~~tC~C~ 12 (14)
T PF03128_consen 4 WNDDTCQCE 12 (14)
T ss_pred ecCCCcCcc
Confidence 677888885
Done!