Query 005454
Match_columns 696
No_of_seqs 775 out of 4918
Neff 10.6
Searched_HMMs 29240
Date Tue Mar 26 01:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.2E-40 1.1E-44 366.9 41.3 445 100-555 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.8E-39 2.3E-43 356.2 40.0 475 21-538 82-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-25 5.7E-30 234.0 39.7 370 127-541 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 7.7E-25 2.6E-29 229.0 38.0 347 200-554 8-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 1E-26 3.4E-31 247.8 21.4 183 290-473 28-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 7.9E-27 2.7E-31 248.5 15.7 193 223-437 27-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.1E-22 7.3E-27 218.7 33.5 425 123-555 8-478 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.5E-21 5E-26 213.4 33.6 426 121-556 25-492 (537)
9 2gw1_A Mitochondrial precursor 99.9 8.9E-22 3.1E-26 213.8 31.6 241 288-532 237-489 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 2.9E-21 9.9E-26 206.0 34.8 333 189-551 24-405 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2E-20 6.9E-25 199.5 32.5 376 140-544 11-443 (450)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-20 1.2E-24 202.4 26.3 435 60-530 26-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 8.8E-18 3E-22 172.8 31.0 308 225-538 6-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.4E-17 4.7E-22 171.3 32.0 294 257-554 3-334 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 175.7 21.3 368 102-510 15-406 (449)
16 3hym_B Cell division cycle pro 99.8 2.9E-17 1E-21 166.8 28.3 285 221-543 21-322 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 1.4E-14 4.7E-19 163.2 49.3 379 124-548 988-1377(1630)
18 2xm6_A Protein corresponding t 99.8 1E-15 3.4E-20 164.9 38.6 351 169-538 56-452 (490)
19 3hym_B Cell division cycle pro 99.8 9.9E-17 3.4E-21 162.8 27.7 263 287-554 21-298 (330)
20 1xi4_A Clathrin heavy chain; a 99.8 2.4E-14 8.1E-19 161.3 47.0 440 22-507 984-1476(1630)
21 2ooe_A Cleavage stimulation fa 99.8 5.2E-15 1.8E-19 161.0 41.0 208 341-554 256-491 (530)
22 2xm6_A Protein corresponding t 99.8 3.8E-15 1.3E-19 160.4 38.2 350 190-557 38-434 (490)
23 1b89_A Protein (clathrin heavy 99.7 3.3E-17 1.1E-21 166.2 18.8 377 71-486 15-414 (449)
24 1fch_A Peroxisomal targeting s 99.7 1.1E-16 3.9E-21 165.3 21.2 256 290-551 66-355 (368)
25 3mkr_A Coatomer subunit epsilo 99.7 3.9E-16 1.3E-20 155.1 23.7 267 269-549 11-288 (291)
26 4g1t_A Interferon-induced prot 99.7 2.6E-15 8.8E-20 160.9 30.1 361 192-566 52-470 (472)
27 1fch_A Peroxisomal targeting s 99.7 1.1E-15 3.7E-20 157.9 25.8 282 201-519 35-357 (368)
28 2ooe_A Cleavage stimulation fa 99.7 1.3E-14 4.6E-19 157.7 35.0 406 89-524 12-495 (530)
29 4eqf_A PEX5-related protein; a 99.7 1.2E-16 4E-21 165.2 17.0 260 288-551 65-352 (365)
30 4eqf_A PEX5-related protein; a 99.7 5.2E-16 1.8E-20 160.3 19.8 231 322-555 64-310 (365)
31 3cv0_A Peroxisome targeting si 99.7 7.4E-16 2.5E-20 156.1 18.5 255 293-552 26-312 (327)
32 3mkr_A Coatomer subunit epsilo 99.7 6.9E-15 2.4E-19 146.0 24.1 225 193-425 36-269 (291)
33 3cv0_A Peroxisome targeting si 99.6 4E-14 1.4E-18 143.3 25.0 222 225-451 24-267 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.4E-21 173.5 6.0 147 90-236 127-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.6 3.2E-16 1.1E-20 171.1 8.2 129 354-483 123-259 (1134)
36 4g1t_A Interferon-induced prot 99.6 1.4E-13 4.7E-18 147.4 28.9 383 120-533 50-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 9.9E-14 3.4E-18 135.0 19.9 224 289-554 6-235 (258)
38 2pl2_A Hypothetical conserved 99.6 9.4E-14 3.2E-18 131.5 18.2 194 355-552 2-211 (217)
39 3uq3_A Heat shock protein STI1 99.6 8.2E-14 2.8E-18 135.6 17.1 235 257-535 5-256 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-13 5.7E-18 134.9 19.5 241 300-549 17-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.5 3.8E-13 1.3E-17 142.5 22.5 339 65-452 9-386 (452)
42 3e4b_A ALGK; tetratricopeptide 99.5 7.9E-13 2.7E-17 140.1 22.2 373 165-553 12-419 (452)
43 3u4t_A TPR repeat-containing p 99.5 5.4E-13 1.8E-17 131.1 19.0 251 259-540 5-269 (272)
44 2h6f_A Protein farnesyltransfe 99.5 1.8E-12 6.1E-17 133.1 19.9 243 288-538 97-365 (382)
45 2ho1_A Type 4 fimbrial biogene 99.5 2.9E-12 9.9E-17 124.3 20.0 196 358-555 37-238 (252)
46 1ouv_A Conserved hypothetical 99.5 1.5E-11 5.3E-16 120.8 24.7 224 287-556 5-252 (273)
47 2vq2_A PILW, putative fimbrial 99.5 4.5E-12 1.6E-16 120.3 20.1 196 357-554 7-210 (225)
48 2ho1_A Type 4 fimbrial biogene 99.4 1.1E-11 3.6E-16 120.3 22.4 206 288-531 37-248 (252)
49 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-12 4.2E-17 126.0 15.6 195 357-554 22-221 (243)
50 1ouv_A Conserved hypothetical 99.4 1.7E-11 6E-16 120.5 24.1 226 256-525 5-255 (273)
51 2q7f_A YRRB protein; TPR, prot 99.4 1.3E-12 4.5E-17 125.8 15.7 181 357-540 56-241 (243)
52 2pl2_A Hypothetical conserved 99.4 5.1E-12 1.8E-16 119.5 19.0 192 289-486 6-211 (217)
53 3u4t_A TPR repeat-containing p 99.4 3.2E-11 1.1E-15 118.3 24.0 226 223-452 4-249 (272)
54 2vq2_A PILW, putative fimbrial 99.4 1.8E-11 6.1E-16 116.1 21.2 208 287-532 7-222 (225)
55 2h6f_A Protein farnesyltransfe 99.4 1.4E-11 4.7E-16 126.5 21.2 225 324-554 98-347 (382)
56 3vtx_A MAMA; tetratricopeptide 99.4 1.3E-11 4.3E-16 113.3 18.8 164 388-555 4-170 (184)
57 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.5E-11 5.2E-16 120.8 20.1 215 224-447 45-269 (275)
58 4a1s_A PINS, partner of inscut 99.4 2.3E-12 7.7E-17 135.2 14.5 259 294-554 54-371 (411)
59 4abn_A Tetratricopeptide repea 99.4 4.2E-12 1.4E-16 135.4 15.7 208 340-552 85-318 (474)
60 3sf4_A G-protein-signaling mod 99.4 4E-12 1.4E-16 132.7 15.1 196 359-554 88-335 (406)
61 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.6E-14 118.6 35.1 413 88-527 64-576 (679)
62 3ro2_A PINS homolog, G-protein 99.4 9.3E-12 3.2E-16 126.0 16.3 259 295-555 12-332 (338)
63 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.9E-16 129.3 16.0 153 391-543 189-364 (406)
64 2ond_A Cleavage stimulation fa 99.3 2E-10 6.7E-15 115.1 23.4 219 305-527 33-276 (308)
65 3ulq_A Response regulator aspa 99.3 8.3E-11 2.8E-15 121.9 20.8 227 294-520 109-367 (383)
66 3ro2_A PINS homolog, G-protein 99.3 3.9E-11 1.3E-15 121.4 16.6 134 391-524 185-335 (338)
67 4a1s_A PINS, partner of inscut 99.3 3.2E-11 1.1E-15 126.3 15.8 266 228-523 54-374 (411)
68 3vtx_A MAMA; tetratricopeptide 99.3 6.6E-11 2.3E-15 108.5 15.8 167 357-526 4-175 (184)
69 4e6h_A MRNA 3'-END-processing 99.3 1.6E-08 5.5E-13 110.8 35.6 227 241-471 328-585 (679)
70 4gyw_A UDP-N-acetylglucosamine 99.2 9.3E-11 3.2E-15 130.0 17.4 162 388-554 8-173 (723)
71 3as5_A MAMA; tetratricopeptide 99.2 1.6E-10 5.6E-15 105.5 16.1 157 395-554 14-172 (186)
72 3ulq_A Response regulator aspa 99.2 1E-10 3.4E-15 121.3 16.0 225 329-554 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 1.4E-11 4.7E-16 123.4 8.9 237 288-554 27-306 (311)
74 2ond_A Cleavage stimulation fa 99.2 7.9E-10 2.7E-14 110.7 21.8 213 340-557 33-272 (308)
75 4i17_A Hypothetical protein; T 99.2 4.2E-10 1.4E-14 107.2 16.6 187 357-554 6-208 (228)
76 3nf1_A KLC 1, kinesin light ch 99.2 3.5E-11 1.2E-15 120.5 9.4 238 257-524 27-310 (311)
77 4i17_A Hypothetical protein; T 99.2 1.3E-09 4.3E-14 103.8 19.3 205 321-537 5-225 (228)
78 1hz4_A MALT regulatory protein 99.2 6.3E-09 2.1E-13 107.2 25.7 260 295-554 21-321 (373)
79 4abn_A Tetratricopeptide repea 99.2 4.2E-10 1.5E-14 119.8 17.1 177 374-555 84-287 (474)
80 3as5_A MAMA; tetratricopeptide 99.2 8.6E-10 2.9E-14 100.6 16.8 168 358-528 8-180 (186)
81 3q15_A PSP28, response regulat 99.1 1E-08 3.5E-13 105.9 24.8 224 295-519 108-363 (378)
82 3q15_A PSP28, response regulat 99.0 6.9E-09 2.3E-13 107.2 19.4 216 267-486 111-362 (378)
83 3edt_B KLC 2, kinesin light ch 99.0 1.1E-09 3.6E-14 107.7 11.3 198 357-554 42-280 (283)
84 1hz4_A MALT regulatory protein 99.0 2.5E-07 8.5E-12 95.1 29.3 159 293-451 140-320 (373)
85 3qky_A Outer membrane assembly 99.0 1.4E-08 4.6E-13 98.9 17.4 204 357-601 14-247 (261)
86 1qqe_A Vesicular transport pro 99.0 7.5E-09 2.6E-13 102.6 14.7 164 360-525 79-273 (292)
87 1qqe_A Vesicular transport pro 99.0 6.4E-09 2.2E-13 103.1 14.1 200 338-552 32-266 (292)
88 4gyw_A UDP-N-acetylglucosamine 98.9 6.4E-09 2.2E-13 115.3 14.8 162 357-523 8-176 (723)
89 3mv2_B Coatomer subunit epsilo 98.9 6.8E-08 2.3E-12 93.9 19.8 175 377-556 85-283 (310)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.1E-08 2.1E-12 91.8 18.2 181 358-558 4-216 (225)
91 3qky_A Outer membrane assembly 98.9 3.3E-08 1.1E-12 96.1 15.9 204 322-545 14-251 (261)
92 2fo7_A Synthetic consensus TPR 98.9 2.3E-08 7.9E-13 85.4 13.1 129 391-554 3-131 (136)
93 2fo7_A Synthetic consensus TPR 98.9 4.4E-08 1.5E-12 83.6 14.9 121 360-483 3-126 (136)
94 4ga2_A E3 SUMO-protein ligase 98.9 2.4E-09 8.1E-14 94.3 6.8 140 398-541 6-149 (150)
95 3edt_B KLC 2, kinesin light ch 98.8 3.5E-08 1.2E-12 96.7 14.9 165 358-522 85-282 (283)
96 2pzi_A Probable serine/threoni 98.8 9.6E-09 3.3E-13 114.5 11.8 169 369-541 402-583 (681)
97 3rjv_A Putative SEL1 repeat pr 98.8 2.3E-07 8E-12 86.8 19.1 162 387-557 16-199 (212)
98 3qou_A Protein YBBN; thioredox 98.8 4.9E-08 1.7E-12 96.3 14.7 172 377-553 105-282 (287)
99 2uy1_A Cleavage stimulation fa 98.8 1.1E-06 3.8E-11 93.3 25.8 125 390-520 287-412 (493)
100 4ga2_A E3 SUMO-protein ligase 98.8 1.2E-08 4.1E-13 89.7 8.6 122 430-554 3-128 (150)
101 3mv2_B Coatomer subunit epsilo 98.8 3.5E-07 1.2E-11 88.9 19.1 180 342-529 85-290 (310)
102 2vsy_A XCC0866; transferase, g 98.7 8.5E-08 2.9E-12 104.9 14.0 159 371-533 2-169 (568)
103 4gco_A Protein STI-1; structur 98.7 1.2E-07 4E-12 80.4 11.4 94 461-554 14-109 (126)
104 2pzi_A Probable serine/threoni 98.7 4.7E-07 1.6E-11 100.8 19.4 190 334-529 402-610 (681)
105 2r5s_A Uncharacterized protein 98.7 1.4E-07 4.8E-12 85.4 12.4 75 479-553 93-171 (176)
106 2vsy_A XCC0866; transferase, g 98.7 2.3E-07 7.7E-12 101.4 16.2 147 336-486 2-154 (568)
107 2vgx_A Chaperone SYCD; alterna 98.7 5E-08 1.7E-12 85.4 8.9 95 460-554 21-117 (148)
108 3gyz_A Chaperone protein IPGC; 98.7 9.3E-08 3.2E-12 83.6 10.4 101 455-555 30-133 (151)
109 3dra_A Protein farnesyltransfe 98.7 2.2E-06 7.6E-11 84.1 21.0 149 403-554 124-286 (306)
110 3urz_A Uncharacterized protein 98.6 2.4E-07 8E-12 86.5 12.9 126 394-524 59-189 (208)
111 3dra_A Protein farnesyltransfe 98.6 5.9E-06 2E-10 81.1 23.1 226 304-535 49-302 (306)
112 4gco_A Protein STI-1; structur 98.6 2E-07 6.9E-12 78.9 10.9 115 420-536 8-125 (126)
113 2ifu_A Gamma-SNAP; membrane fu 98.6 7.3E-07 2.5E-11 88.8 16.7 221 300-548 3-254 (307)
114 3u3w_A Transcriptional activat 98.6 1.9E-06 6.5E-11 85.1 19.2 161 394-554 80-265 (293)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.6 6.2E-07 2.1E-11 83.8 14.5 123 429-556 11-151 (213)
116 2uy1_A Cleavage stimulation fa 98.6 5.1E-05 1.7E-09 80.5 30.4 200 208-417 196-412 (493)
117 2xcb_A PCRH, regulatory protei 98.6 5E-07 1.7E-11 78.3 11.9 95 460-554 18-114 (142)
118 3qou_A Protein YBBN; thioredox 98.6 1.5E-06 5E-11 85.6 16.6 153 329-483 123-278 (287)
119 2qfc_A PLCR protein; TPR, HTH, 98.6 1.3E-06 4.4E-11 86.4 16.1 163 391-553 77-264 (293)
120 2yhc_A BAMD, UPF0169 lipoprote 98.5 1.5E-06 5.1E-11 82.1 15.5 183 324-527 5-219 (225)
121 3rjv_A Putative SEL1 repeat pr 98.5 2.2E-06 7.5E-11 80.1 16.4 173 341-523 4-199 (212)
122 2c2l_A CHIP, carboxy terminus 98.5 1.6E-07 5.6E-12 92.1 9.0 191 357-555 3-199 (281)
123 1hh8_A P67PHOX, NCF-2, neutrop 98.5 3.2E-06 1.1E-10 78.8 17.2 145 361-525 9-154 (213)
124 2r5s_A Uncharacterized protein 98.5 2.5E-06 8.5E-11 77.0 15.7 154 259-416 8-171 (176)
125 3urz_A Uncharacterized protein 98.5 1.3E-06 4.5E-11 81.3 14.1 135 361-500 57-198 (208)
126 1a17_A Serine/threonine protei 98.5 9.5E-07 3.3E-11 78.5 12.4 125 427-553 16-144 (166)
127 1na0_A Designed protein CTPR3; 98.5 1.1E-06 3.7E-11 73.6 11.5 113 426-540 11-125 (125)
128 3upv_A Heat shock protein STI1 98.5 7.6E-07 2.6E-11 75.2 10.4 95 460-554 4-100 (126)
129 2lni_A Stress-induced-phosphop 98.5 1.1E-06 3.9E-11 74.6 11.6 114 426-541 18-133 (133)
130 2ifu_A Gamma-SNAP; membrane fu 98.5 1E-06 3.5E-11 87.7 12.7 197 335-553 3-222 (307)
131 2e2e_A Formate-dependent nitri 98.5 1.1E-06 3.9E-11 79.3 11.9 120 435-556 21-145 (177)
132 2vyi_A SGTA protein; chaperone 98.5 1.2E-06 4E-11 74.1 11.3 116 426-543 14-131 (131)
133 4f3v_A ESX-1 secretion system 98.5 4.9E-07 1.7E-11 86.7 9.4 137 393-534 106-249 (282)
134 1p5q_A FKBP52, FK506-binding p 98.4 1.8E-06 6E-11 87.2 12.4 144 388-553 146-292 (336)
135 4f3v_A ESX-1 secretion system 98.4 4E-06 1.4E-10 80.4 14.0 181 370-555 18-237 (282)
136 1wao_1 Serine/threonine protei 98.4 1.7E-06 5.9E-11 91.7 12.4 117 433-551 15-135 (477)
137 3gw4_A Uncharacterized protein 98.4 6.2E-06 2.1E-10 76.0 14.3 61 494-554 109-175 (203)
138 3u3w_A Transcriptional activat 98.3 4.2E-05 1.5E-09 75.3 20.5 158 364-521 81-266 (293)
139 2kck_A TPR repeat; tetratricop 98.3 2.4E-06 8.3E-11 69.9 9.6 98 460-557 6-108 (112)
140 1hxi_A PEX5, peroxisome target 98.3 1.4E-06 4.9E-11 72.9 7.9 95 462-556 19-115 (121)
141 3q49_B STIP1 homology and U bo 98.3 3.8E-06 1.3E-10 71.9 10.6 98 458-555 7-106 (137)
142 2e2e_A Formate-dependent nitri 98.3 3.9E-06 1.3E-10 75.7 11.0 129 400-531 21-154 (177)
143 2vgx_A Chaperone SYCD; alterna 98.3 1.8E-06 6E-11 75.4 8.4 105 425-531 22-128 (148)
144 3sz7_A HSC70 cochaperone (SGT) 98.3 2.8E-06 9.5E-11 75.6 9.7 95 460-554 11-107 (164)
145 3gyz_A Chaperone protein IPGC; 98.2 5.1E-06 1.7E-10 72.5 10.3 105 420-526 31-138 (151)
146 2fbn_A 70 kDa peptidylprolyl i 98.2 5E-06 1.7E-10 76.6 10.8 169 367-556 13-187 (198)
147 4gcn_A Protein STI-1; structur 98.2 3.6E-06 1.2E-10 71.2 8.9 94 461-554 9-111 (127)
148 1elw_A TPR1-domain of HOP; HOP 98.2 6.7E-06 2.3E-10 67.9 10.5 94 461-554 5-100 (118)
149 3rkv_A Putative peptidylprolyl 98.2 6.9E-06 2.4E-10 72.8 11.2 63 492-554 63-125 (162)
150 1elw_A TPR1-domain of HOP; HOP 98.2 9.8E-06 3.4E-10 66.8 11.5 109 426-536 6-116 (118)
151 3q7a_A Farnesyltransferase alp 98.2 6.4E-05 2.2E-09 74.5 18.8 209 342-554 73-330 (349)
152 2lni_A Stress-induced-phosphop 98.2 5.9E-06 2E-10 70.0 10.1 97 458-554 14-112 (133)
153 1na0_A Designed protein CTPR3; 98.2 6E-06 2.1E-10 68.9 9.9 96 460-555 9-106 (125)
154 3q7a_A Farnesyltransferase alp 98.2 0.0003 1E-08 69.8 23.2 231 298-534 64-345 (349)
155 2qfc_A PLCR protein; TPR, HTH, 98.2 1.8E-05 6.2E-10 78.0 14.7 162 360-521 77-266 (293)
156 2dba_A Smooth muscle cell asso 98.2 1.2E-05 4E-10 69.7 11.8 95 460-554 28-127 (148)
157 2vyi_A SGTA protein; chaperone 98.2 1E-05 3.5E-10 68.1 11.0 97 459-555 11-109 (131)
158 1a17_A Serine/threonine protei 98.2 1.9E-05 6.4E-10 69.9 13.0 127 391-520 15-145 (166)
159 2dba_A Smooth muscle cell asso 98.2 2E-05 6.9E-10 68.2 12.9 78 461-538 66-145 (148)
160 3gw4_A Uncharacterized protein 98.2 2.4E-05 8.2E-10 72.0 13.9 133 390-522 27-177 (203)
161 3sz7_A HSC70 cochaperone (SGT) 98.2 1.2E-05 4.2E-10 71.3 11.3 108 425-534 12-121 (164)
162 3upv_A Heat shock protein STI1 98.2 9.9E-06 3.4E-10 68.2 9.9 108 427-536 7-122 (126)
163 2xcb_A PCRH, regulatory protei 98.2 7.4E-06 2.5E-10 70.8 9.3 108 426-535 20-129 (142)
164 2hr2_A Hypothetical protein; a 98.1 7.9E-06 2.7E-10 70.6 8.4 62 493-554 58-130 (159)
165 3dss_A Geranylgeranyl transfer 98.1 0.0003 1E-08 69.4 20.6 229 299-534 40-317 (331)
166 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.2E-05 7.6E-10 82.7 13.3 144 389-554 268-414 (457)
167 3k9i_A BH0479 protein; putativ 98.1 2.5E-06 8.5E-11 71.0 4.8 82 473-554 3-89 (117)
168 2fbn_A 70 kDa peptidylprolyl i 98.1 3.8E-06 1.3E-10 77.4 6.5 94 461-554 39-150 (198)
169 3dss_A Geranylgeranyl transfer 98.1 0.00031 1.1E-08 69.3 19.9 216 335-554 41-303 (331)
170 1elr_A TPR2A-domain of HOP; HO 98.0 2.6E-05 8.8E-10 65.6 10.6 94 461-554 5-107 (131)
171 3q49_B STIP1 homology and U bo 98.0 1.9E-05 6.5E-10 67.4 9.8 99 424-524 9-109 (137)
172 2xev_A YBGF; tetratricopeptide 98.0 1.6E-05 5.5E-10 67.0 8.7 89 466-554 8-104 (129)
173 1p5q_A FKBP52, FK506-binding p 98.0 3.4E-05 1.2E-09 77.6 12.0 115 336-452 126-258 (336)
174 2kck_A TPR repeat; tetratricop 98.0 3.8E-05 1.3E-09 62.5 10.2 99 426-526 8-111 (112)
175 4b4t_Q 26S proteasome regulato 98.0 6.6E-05 2.3E-09 78.5 14.4 163 391-553 57-243 (434)
176 1wao_1 Serine/threonine protei 98.0 4.2E-05 1.4E-09 81.0 12.5 117 364-484 12-134 (477)
177 2c2l_A CHIP, carboxy terminus 98.0 3.2E-05 1.1E-09 75.6 10.6 106 423-530 3-110 (281)
178 1elr_A TPR2A-domain of HOP; HO 97.9 3.2E-05 1.1E-09 65.0 8.7 114 391-537 6-123 (131)
179 3n71_A Histone lysine methyltr 97.9 5.1E-05 1.8E-09 79.8 11.7 124 434-557 319-466 (490)
180 3ro3_A PINS homolog, G-protein 97.9 6.6E-05 2.2E-09 65.8 10.7 61 494-554 91-157 (164)
181 4gcn_A Protein STI-1; structur 97.9 0.00013 4.5E-09 61.3 12.0 60 391-452 10-70 (127)
182 1dce_A Protein (RAB geranylger 97.9 0.00045 1.5E-08 74.5 18.7 169 373-544 44-244 (567)
183 2if4_A ATFKBP42; FKBP-like, al 97.9 2.3E-05 7.8E-10 79.0 7.8 147 389-555 179-328 (338)
184 1hxi_A PEX5, peroxisome target 97.8 5.4E-05 1.8E-09 63.2 8.7 95 430-526 23-119 (121)
185 2xev_A YBGF; tetratricopeptide 97.8 0.00013 4.6E-09 61.2 11.3 102 433-534 11-118 (129)
186 3ma5_A Tetratricopeptide repea 97.8 6.4E-05 2.2E-09 60.2 8.7 65 490-554 5-69 (100)
187 4b4t_Q 26S proteasome regulato 97.8 0.00034 1.2E-08 73.1 16.7 159 327-485 59-241 (434)
188 1ihg_A Cyclophilin 40; ppiase 97.8 8.4E-05 2.9E-09 75.7 11.3 136 391-548 225-363 (370)
189 2l6j_A TPR repeat-containing p 97.8 7E-06 2.4E-10 67.1 2.7 93 459-551 3-103 (111)
190 2hr2_A Hypothetical protein; a 97.8 3.1E-05 1.1E-09 66.9 6.7 116 391-532 13-142 (159)
191 3ro3_A PINS homolog, G-protein 97.8 0.00011 3.7E-09 64.3 10.6 132 391-522 11-159 (164)
192 1ihg_A Cyclophilin 40; ppiase 97.8 9.4E-05 3.2E-09 75.3 11.3 64 491-554 272-335 (370)
193 2if4_A ATFKBP42; FKBP-like, al 97.8 6E-05 2E-09 75.9 9.4 152 358-526 179-333 (338)
194 3rkv_A Putative peptidylprolyl 97.8 4.6E-05 1.6E-09 67.4 7.6 77 460-536 63-142 (162)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00017 5.8E-09 75.9 12.2 95 461-555 269-380 (457)
196 3k9i_A BH0479 protein; putativ 97.7 3.8E-05 1.3E-09 63.6 5.6 93 437-530 3-99 (117)
197 1na3_A Designed protein CTPR2; 97.6 0.00014 4.6E-09 56.7 7.6 81 460-540 9-91 (91)
198 3bee_A Putative YFRE protein; 97.6 0.00053 1.8E-08 53.7 10.5 69 489-557 3-74 (93)
199 2kat_A Uncharacterized protein 97.6 0.0001 3.5E-09 60.7 6.7 77 478-554 3-81 (115)
200 3n71_A Histone lysine methyltr 97.6 0.00019 6.3E-09 75.6 9.7 116 468-601 317-450 (490)
201 3qwp_A SET and MYND domain-con 97.5 0.00029 9.8E-09 73.0 9.3 116 467-600 294-427 (429)
202 1zu2_A Mitochondrial import re 97.5 5.4E-05 1.8E-09 65.3 3.1 84 473-556 15-121 (158)
203 2l6j_A TPR repeat-containing p 97.4 0.00036 1.2E-08 56.6 7.6 66 491-556 3-68 (111)
204 1klx_A Cysteine rich protein B 97.4 0.0016 5.6E-08 55.4 11.8 88 467-556 32-127 (138)
205 1na3_A Designed protein CTPR2; 97.2 0.00081 2.8E-08 52.1 7.3 63 492-554 9-71 (91)
206 1klx_A Cysteine rich protein B 97.2 0.0022 7.4E-08 54.7 10.1 113 402-523 8-128 (138)
207 3qww_A SET and MYND domain-con 97.1 0.001 3.4E-08 68.8 8.6 82 473-554 311-410 (433)
208 1zu2_A Mitochondrial import re 97.1 0.00026 8.9E-09 61.0 3.4 102 400-528 13-127 (158)
209 2kat_A Uncharacterized protein 97.1 0.00074 2.5E-08 55.3 6.0 81 443-525 4-86 (115)
210 1dce_A Protein (RAB geranylger 97.1 0.0058 2E-07 65.8 14.4 148 403-554 43-220 (567)
211 1pc2_A Mitochondria fission pr 96.9 0.0028 9.5E-08 53.9 8.2 90 490-605 30-124 (152)
212 3ma5_A Tetratricopeptide repea 96.9 0.0039 1.3E-07 49.5 8.2 64 388-452 6-69 (100)
213 3mkq_A Coatomer beta'-subunit; 96.8 0.054 1.8E-06 61.4 20.6 152 201-383 609-761 (814)
214 3qww_A SET and MYND domain-con 96.8 0.0063 2.1E-07 62.8 11.0 94 436-529 310-424 (433)
215 2kc7_A BFR218_protein; tetratr 96.8 0.0026 8.9E-08 50.2 6.5 52 502-553 10-62 (99)
216 3ly7_A Transcriptional activat 96.7 0.036 1.2E-06 54.8 15.2 141 386-554 191-338 (372)
217 1wy6_A Hypothetical protein ST 96.6 0.11 3.7E-06 42.4 14.1 139 401-558 19-157 (172)
218 2kc7_A BFR218_protein; tetratr 96.6 0.0071 2.4E-07 47.6 7.7 78 466-551 6-86 (99)
219 3qwp_A SET and MYND domain-con 96.5 0.013 4.3E-07 60.6 11.4 95 436-530 299-414 (429)
220 3ly7_A Transcriptional activat 96.2 0.039 1.3E-06 54.6 12.2 39 518-556 269-307 (372)
221 3lvg_A Clathrin heavy chain 1; 96.2 0.00018 6.1E-09 72.4 -4.6 358 158-550 85-478 (624)
222 3mkq_A Coatomer beta'-subunit; 96.1 0.084 2.9E-06 59.8 16.0 45 369-415 663-707 (814)
223 3u64_A Protein TP_0956; tetrat 95.8 0.03 1E-06 53.1 8.9 86 476-561 179-275 (301)
224 2v5f_A Prolyl 4-hydroxylase su 95.7 0.049 1.7E-06 43.3 8.8 70 463-532 8-86 (104)
225 1pc2_A Mitochondria fission pr 95.6 0.11 3.7E-06 44.1 10.6 92 407-531 16-110 (152)
226 1nzn_A CGI-135 protein, fissio 95.4 0.052 1.8E-06 44.3 7.6 70 458-527 33-109 (126)
227 3lvg_A Clathrin heavy chain 1; 95.4 0.011 3.7E-07 59.8 4.2 113 357-482 409-534 (624)
228 3bee_A Putative YFRE protein; 95.1 0.11 3.7E-06 40.3 8.4 76 457-533 3-83 (93)
229 1y8m_A FIS1; mitochondria, unk 95.1 0.45 1.5E-05 39.5 12.3 91 489-605 36-130 (144)
230 3mkq_B Coatomer subunit alpha; 94.2 0.82 2.8E-05 39.8 12.5 127 368-518 15-141 (177)
231 3mkq_B Coatomer subunit alpha; 93.6 3.3 0.00011 35.9 17.2 102 267-385 15-116 (177)
232 2v5f_A Prolyl 4-hydroxylase su 93.5 0.21 7.2E-06 39.5 7.2 64 491-554 4-74 (104)
233 4gns_B Protein CSD3, chitin bi 93.1 0.38 1.3E-05 52.7 10.5 54 500-553 345-398 (754)
234 3lpz_A GET4 (YOR164C homolog); 93.0 7 0.00024 37.9 19.5 137 93-240 38-185 (336)
235 1nzn_A CGI-135 protein, fissio 92.5 1.5 5.2E-05 35.6 10.8 88 401-491 13-106 (126)
236 3o48_A Mitochondria fission 1 92.1 0.64 2.2E-05 38.0 8.0 65 490-554 38-106 (134)
237 4b4t_P 26S proteasome regulato 92.0 12 0.00042 38.3 19.9 164 225-388 140-325 (445)
238 1qsa_A Protein (soluble lytic 92.0 15 0.00052 39.3 31.3 250 261-520 76-347 (618)
239 3u64_A Protein TP_0956; tetrat 91.0 0.41 1.4E-05 45.4 6.7 51 474-524 218-272 (301)
240 4ady_A RPN2, 26S proteasome re 90.9 24 0.00082 39.6 23.2 25 194-218 233-257 (963)
241 1wy6_A Hypothetical protein ST 88.9 8.5 0.00029 31.5 12.8 140 298-456 17-156 (172)
242 2wpv_A GET4, UPF0363 protein Y 87.8 20 0.00069 34.4 19.2 137 93-240 36-186 (312)
243 4h7y_A Dual specificity protei 87.7 6.3 0.00021 33.0 10.5 119 219-364 10-135 (161)
244 1v54_E Cytochrome C oxidase po 86.5 3 0.0001 32.1 7.3 63 404-468 25-87 (109)
245 4h7y_A Dual specificity protei 86.3 5.5 0.00019 33.4 9.5 106 285-423 10-128 (161)
246 3ffl_A Anaphase-promoting comp 85.3 1.8 6.3E-05 36.9 6.4 121 418-552 12-148 (167)
247 2ff4_A Probable regulatory pro 83.5 2.3 7.7E-05 43.0 7.5 67 495-561 174-245 (388)
248 3ffl_A Anaphase-promoting comp 83.4 6.1 0.00021 33.7 8.8 24 465-488 127-150 (167)
249 2wpv_A GET4, UPF0363 protein Y 83.2 33 0.0011 32.9 19.6 83 356-453 132-217 (312)
250 4b4t_P 26S proteasome regulato 83.0 44 0.0015 34.1 20.9 184 361-557 180-388 (445)
251 2uwj_G Type III export protein 82.6 14 0.00049 28.2 9.4 86 339-429 22-107 (115)
252 2p58_C Putative type III secre 82.6 12 0.00041 28.7 8.9 78 237-318 22-99 (116)
253 4ady_A RPN2, 26S proteasome re 81.8 73 0.0025 35.8 32.4 247 267-519 384-656 (963)
254 3lpz_A GET4 (YOR164C homolog); 81.3 41 0.0014 32.6 20.8 83 355-452 133-215 (336)
255 4fhn_B Nucleoporin NUP120; pro 81.2 43 0.0015 39.2 18.1 165 260-442 815-989 (1139)
256 4gns_B Protein CSD3, chitin bi 80.9 12 0.00041 41.0 12.3 53 332-385 346-398 (754)
257 2uwj_G Type III export protein 80.3 11 0.00039 28.7 8.2 78 237-318 21-98 (115)
258 2ff4_A Probable regulatory pro 80.3 10 0.00035 38.1 11.1 69 393-462 175-247 (388)
259 2y69_E Cytochrome C oxidase su 80.1 7.6 0.00026 31.6 7.6 63 404-468 68-130 (152)
260 4fhn_B Nucleoporin NUP120; pro 79.9 52 0.0018 38.4 18.3 78 260-339 902-987 (1139)
261 1wdy_A 2-5A-dependent ribonucl 78.6 32 0.0011 32.0 13.7 208 64-281 7-240 (285)
262 2p58_C Putative type III secre 77.6 22 0.00074 27.3 10.3 86 339-429 23-108 (116)
263 1v54_E Cytochrome C oxidase po 76.7 14 0.00047 28.4 7.8 48 486-533 39-86 (109)
264 2l0z_A Glycoprotein G2; zinc-b 74.8 0.96 3.3E-05 27.6 0.8 10 686-695 20-29 (42)
265 1y8m_A FIS1; mitochondria, unk 74.5 23 0.00079 29.3 9.3 37 494-530 79-115 (144)
266 3ltm_A Alpha-REP4; protein eng 72.9 50 0.0017 29.2 19.7 91 356-451 93-183 (211)
267 3o48_A Mitochondria fission 1 72.8 37 0.0013 27.7 10.7 37 494-530 80-116 (134)
268 3ltm_A Alpha-REP4; protein eng 70.4 57 0.0019 28.8 17.4 17 190-206 125-141 (211)
269 1zbp_A Hypothetical protein VP 69.9 7.4 0.00025 36.3 6.0 58 468-525 5-64 (273)
270 1zbp_A Hypothetical protein VP 67.6 36 0.0012 31.7 10.1 119 398-528 6-136 (273)
271 3txn_A 26S proteasome regulato 67.4 1E+02 0.0036 30.6 15.6 160 325-484 21-205 (394)
272 1wdy_A 2-5A-dependent ribonucl 66.5 62 0.0021 29.9 12.5 16 367-382 225-240 (285)
273 3eiq_C Programmed cell death p 65.3 68 0.0023 31.4 12.2 63 260-322 220-287 (358)
274 3ltj_A Alpharep-4; protein eng 64.4 72 0.0025 27.8 18.4 52 85-136 54-105 (201)
275 2qx5_A Nucleoporin NIC96; mRNA 62.9 31 0.001 37.2 10.0 17 536-552 548-564 (661)
276 2y69_E Cytochrome C oxidase su 62.6 36 0.0012 27.8 7.8 49 485-533 81-129 (152)
277 3ltj_A Alpharep-4; protein eng 59.2 90 0.0031 27.1 18.3 16 423-438 151-166 (201)
278 3mv2_A Coatomer subunit alpha; 58.1 60 0.0021 31.1 9.9 60 482-555 195-256 (325)
279 3esl_A Checkpoint serine/threo 56.3 76 0.0026 28.0 9.6 88 494-607 82-171 (202)
280 1oyz_A Hypothetical protein YI 54.0 1.4E+02 0.0047 27.7 19.1 16 357-372 141-156 (280)
281 2k0q_A Putative uncharacterize 50.5 5 0.00017 28.0 0.9 20 672-691 8-27 (74)
282 4b4t_R RPN7, 26S proteasome re 50.4 84 0.0029 31.8 10.6 92 362-453 135-237 (429)
283 4b4t_R RPN7, 26S proteasome re 49.9 49 0.0017 33.6 8.7 95 391-485 133-233 (429)
284 3hra_A Ankyrin repeat family p 49.0 1.3E+02 0.0044 25.9 11.1 59 199-258 111-174 (201)
285 2hgo_A CASSIICOLIN; toxin, dis 48.2 3.3 0.00011 21.7 -0.2 13 684-696 8-22 (27)
286 3kea_A K1L; tropism, ANK repea 47.2 1.6E+02 0.0053 27.5 11.5 8 106-113 12-19 (285)
287 3bqo_A Telomeric repeat-bindin 47.2 93 0.0032 27.2 8.4 69 476-544 94-169 (211)
288 3jxi_A Vanilloid receptor-rela 44.1 43 0.0015 30.8 6.8 28 129-156 10-37 (260)
289 4a1g_A Mitotic checkpoint seri 42.9 1.4E+02 0.0049 24.9 8.8 49 511-559 84-134 (152)
290 1n11_A Ankyrin; clathrin, BAND 41.9 2.7E+02 0.0094 27.6 15.8 49 66-115 18-69 (437)
291 2nsz_A Programmed cell death p 41.7 1.4E+02 0.0047 24.1 8.6 61 261-321 11-76 (129)
292 2nsz_A Programmed cell death p 40.8 1.1E+02 0.0037 24.8 7.7 63 93-155 10-77 (129)
293 3eu9_A Huntingtin-interacting 36.2 1.9E+02 0.0065 25.5 9.9 15 70-84 17-31 (240)
294 2lo3_A SAGA-associated factor 36.0 8.2 0.00028 23.8 0.1 11 651-661 15-25 (44)
295 3esl_A Checkpoint serine/threo 35.4 2.3E+02 0.0079 24.9 10.1 83 208-321 61-148 (202)
296 2wvi_A Mitotic checkpoint seri 34.6 2.1E+02 0.0072 24.2 8.8 49 511-559 79-129 (164)
297 2ion_A PDCD4, programmed cell 34.6 1.2E+02 0.0041 25.4 7.2 62 260-321 12-78 (152)
298 1qc6_A EVH1 domain from ENA/VA 34.5 14 0.00049 30.2 1.4 39 645-691 45-87 (130)
299 2qx5_A Nucleoporin NIC96; mRNA 32.4 5E+02 0.017 27.8 21.5 39 95-133 157-198 (661)
300 1k1a_A B-cell lymphoma 3-encod 32.2 2.6E+02 0.009 24.6 12.8 12 203-214 18-29 (241)
301 2pk8_A Uncharacterized protein 32.1 95 0.0032 23.2 5.1 74 584-680 14-87 (103)
302 2ion_A PDCD4, programmed cell 31.7 1E+02 0.0036 25.7 6.4 62 93-154 12-78 (152)
303 2d2s_A Exocyst complex compone 31.6 1.7E+02 0.0057 26.6 8.3 23 127-149 24-46 (235)
304 2d2s_A Exocyst complex compone 31.5 1.2E+02 0.0041 27.6 7.3 85 396-484 25-115 (235)
305 3eu9_A Huntingtin-interacting 30.5 1.4E+02 0.0048 26.5 7.9 175 64-247 44-232 (240)
306 3ljn_A Hypothetical protein; a 30.4 2.4E+02 0.0082 27.2 10.2 82 64-146 22-106 (364)
307 1k1a_A B-cell lymphoma 3-encod 30.3 2.3E+02 0.008 25.0 9.5 27 129-155 14-40 (241)
308 2r9g_A AAA ATPase, central reg 30.1 2.8E+02 0.0097 24.3 9.6 44 395-439 17-63 (204)
309 1j0t_A MIH, MOLT-inhibiting ho 30.0 10 0.00034 27.6 -0.2 14 651-664 20-33 (78)
310 1oyz_A Hypothetical protein YI 29.4 3.3E+02 0.011 24.9 20.9 19 285-303 139-157 (280)
311 4b4t_S RPN3, 26S proteasome re 27.4 1.5E+02 0.0053 30.5 7.9 61 425-485 232-295 (523)
312 3aji_A 26S proteasome non-ATPa 27.1 3.1E+02 0.01 24.0 9.6 19 97-115 10-28 (231)
313 3mkr_B Coatomer subunit alpha; 26.4 1.9E+02 0.0064 27.6 7.7 61 482-556 186-248 (320)
314 3b7b_A Euchromatic histone-lys 25.2 2.4E+02 0.0081 24.9 8.5 50 66-116 48-100 (237)
315 3bge_A Predicted ATPase; struc 24.5 3.3E+02 0.011 23.9 8.2 45 395-439 10-57 (201)
316 3bu8_A Telomeric repeat-bindin 24.1 2.8E+02 0.0096 24.7 7.7 68 440-507 88-162 (235)
317 1ug3_A EIF4GI, eukaryotic prot 23.9 2E+02 0.0067 27.9 7.8 25 63-87 15-39 (339)
318 3ygs_P Procaspase 9; apoptosis 23.7 94 0.0032 23.6 4.3 39 205-243 51-89 (97)
319 3ygs_P Procaspase 9; apoptosis 23.3 1.2E+02 0.004 23.1 4.8 38 271-308 51-88 (97)
320 3eiq_C Programmed cell death p 23.0 5.3E+02 0.018 25.1 16.0 71 61-132 56-130 (358)
321 2fr5_A Cytidine deaminase; tet 22.6 1.7E+02 0.0059 24.2 6.0 86 589-679 15-120 (146)
322 2fe3_A Peroxide operon regulat 22.5 2.5E+02 0.0084 23.1 7.1 49 223-271 22-70 (145)
323 2r9g_A AAA ATPase, central reg 21.8 3.3E+02 0.011 23.9 7.7 39 299-338 25-63 (204)
324 1ya0_A SMG-7 transcript varian 21.6 2E+02 0.0069 29.6 7.6 44 505-548 165-208 (497)
325 3hra_A Ankyrin repeat family p 21.1 3.8E+02 0.013 22.7 11.9 39 244-282 54-94 (201)
326 2b7e_A PRE-mRNA processing pro 21.1 83 0.0029 21.4 3.0 30 137-166 2-31 (59)
327 2zu6_B Programmed cell death p 20.8 5.4E+02 0.018 24.4 13.7 62 260-321 169-235 (307)
328 3qye_A TBC1 domain family memb 20.8 4.9E+02 0.017 24.8 10.0 40 178-217 210-249 (331)
329 2xig_A Ferric uptake regulatio 20.0 3.5E+02 0.012 22.3 7.6 52 220-271 24-75 (150)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.2e-40 Score=366.93 Aligned_cols=445 Identities=11% Similarity=-0.020 Sum_probs=364.6
Q ss_pred HHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHH
Q 005454 100 HARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIH 179 (696)
Q Consensus 100 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 179 (696)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45566777777777777777777888888888888888888888888774 3567777777888888888888888887
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCC-------------------ChhHHHHHHHHHHhCCCchH
Q 005454 180 GKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNR-------------------NLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 180 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~ 240 (696)
..+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|++++
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 218 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR 218 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence 776543 567778888888888888888888888854433 36778888888888888888
Q ss_pred HHHHHHHHHHcCCCCCcc-h--------------------------------------HHHHHHHHHhcCCHHHHHHHHH
Q 005454 241 CIDLFQEMQLLGLNPDEV-T--------------------------------------VSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~-t--------------------------------------~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
|+++|++|.+.+ |+.. . |+.++..|.+.|++++|.++|+
T Consensus 219 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 219 AKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 888888887754 3322 2 2233555778899999999999
Q ss_pred hccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 282 VIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 282 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
++.+ ++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.++...|+.++|..++..+.+... .+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHH
Confidence 9987 799999999999999999999999999999764 34778899999999999999999999999997654 4788
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 453 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ 453 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999875 4567899999999999999999999999999864 4578899999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCC
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-------PHKPN--SLIWSTLLSVCAMKGD 507 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~ 507 (696)
.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...|+
T Consensus 454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 531 (597)
T 2xpi_A 454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531 (597)
T ss_dssp HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999874 3456889999999999999999999999876 45677 7899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 508 IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999773
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-39 Score=356.18 Aligned_cols=475 Identities=10% Similarity=-0.007 Sum_probs=332.9
Q ss_pred CChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCCCcccHHHHHHHHHHccCChHHHHHHHccC--CCCCcchHHHHHH
Q 005454 21 ATEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEPNTTFLHNRLLHFYAKSGKLFYARDLFDKM--PLRDIISWNALLS 98 (696)
Q Consensus 21 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~ 98 (696)
++...|..+++.+. ..++...|...+..+....|++ ..+..++.+|.+.|++++|..+|+++ ..+++.+++.++.
T Consensus 82 ~~~~~~~~~~~~~~--~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDAL--MQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 45566777777776 5667777777777666544422 55566777777777777777777776 3456777777777
Q ss_pred HHHccCChhHHHHHHhcCC-CC------------------CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-
Q 005454 99 AHARSGSVQDLRALFDKMP-IR------------------DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYT- 158 (696)
Q Consensus 99 ~~~~~g~~~~A~~~f~~~~-~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t- 158 (696)
+|.++|++++|.++|+++. .. +..+|+.++.+|.+.|++++|+++|++|.+. .|+..+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 236 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEA 236 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHH
Confidence 7777777777777777433 22 3567777777777777777777777777654 344332
Q ss_pred HHHHHHHHHccCChH--HHHHH-HHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC--CChhHHHHHHHHHH
Q 005454 159 HVSALNACAQLLDLR--RGKQI-HGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN--RNLVSWNLMISGYL 233 (696)
Q Consensus 159 ~~~ll~~~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~ 233 (696)
+..+...+...+..+ .+..+ +..+...+..+...+++.++.+|.+.|++++|.++|+++.. ++..+|+.++.+|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 222222221111111 11111 33334444444455566667777777777777777777776 67777777777777
Q ss_pred hCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHH
Q 005454 234 KNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 234 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|+.++|..+|+.+. +.+..+|+.++..|.+.|++++|.++
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 7777777777777777654 2355666666666666666666666666554 23455566666666666666666666
Q ss_pred HHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CC
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TR 387 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~ 387 (696)
|+++.+ ... .+..+++.++.+|.+.|++++|.++|+++. ..
T Consensus 396 ~~~~~~-----------------------------------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 396 FSKSST-----------------------------------MDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHH-----------------------------------HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHH-----------------------------------hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 666553 221 245567777777777777777777777654 34
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CCCCC--hHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVH---GITPS--LDH 462 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 462 (696)
+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+.. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 77888888899999999999999999988753 4467888889999999999999999999887642 55777 689
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
|..++.+|.+.|++++|.+.++++.. .| +..+|..+..+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 99999999999999999999987532 34 788999999999999999999999999999999999999999998864
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.7e-25 Score=234.03 Aligned_cols=370 Identities=14% Similarity=0.157 Sum_probs=272.4
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC
Q 005454 127 AIAGFANKGFSREALQVFSRMQKDRFEPTDY-THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG 205 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 205 (696)
+...+.+.|++++|++.+.++.+. .|+.. .+..+...+...|+++.|...+...++.. +.+...+..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667788888888888887764 45544 44445555667788888888887777664 446677778888888888
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHH
Q 005454 206 EIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 206 ~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
++++|...|+++.. | +..+|..+...+.+.|++++|++.|+++.+.. |+.. .+..+...+...|++++|...|+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888877653 3 34567777778888888888888887777643 4433 34444455555666666666665
Q ss_pred hcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 282 VIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 282 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
++. +.+..+|..+...+...|++++|+..|+++.+ ..+ .+.
T Consensus 160 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~p-~~~ 203 (388)
T 1w3b_A 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LDP-NFL 203 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HCT-TCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cCC-CcH
Confidence 554 22344555555556666666666665555554 332 134
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSAC 434 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 434 (696)
..+..+...+...|++++|...|++.. +.+..+|..+...|...|++++|++.|+++.+. .|+ ..++..+..++
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Confidence 555666667777777777777776543 335678888889999999999999999999884 444 67888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|...|+.+.+. .+++...+..++..+.+.|++++|.+.++++.. .| +..+|..+..++...|++++|.
T Consensus 282 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999873 356678899999999999999999999988543 34 5678999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 513 MAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
..++++++++|.++.+|..++.+|...|+
T Consensus 360 ~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 360 MHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.7e-25 Score=229.00 Aligned_cols=347 Identities=14% Similarity=0.070 Sum_probs=267.5
Q ss_pred HHHcCCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH
Q 005454 200 MYAKGGEIDKARWLFDRMNN--R-NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA 276 (696)
Q Consensus 200 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A 276 (696)
.+.+.|++++|.+.++++.. | +...+..+...+.+.|++++|...++...... +.+..++..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34445555555555544432 2 23344444455555555555555555554432 33445566666666666666666
Q ss_pred HHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCcc-chHHHHHHHHhhcCchhHHHHHHHHHHh
Q 005454 277 GRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKF-SISSVVSSCAKLASLYHGQVVHGKAVVL 352 (696)
Q Consensus 277 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 352 (696)
...|+++. +.+...|..+..++...|++++|++.|+++.+. .|+.. .+..+...+...|++++|...+..+.+.
T Consensus 87 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666554 234456777888888888888888888888763 45543 4455666777788888888888888877
Q ss_pred CCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHH
Q 005454 353 GVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFV 428 (696)
Q Consensus 353 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~ 428 (696)
.+. +..++..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++.... .|+ ..++.
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 241 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHH
Confidence 543 67888999999999999999999999876 345678999999999999999999999999884 554 67888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g 506 (696)
.+..++...|++++|...|+.+.+. -+.+...|..++..|.+.|++++|.+.++++.. +++..+|..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999863 233467899999999999999999999987532 457789999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999876
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1e-26 Score=247.79 Aligned_cols=183 Identities=11% Similarity=0.177 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcC---------chhHHHHHHHHHHhCCCCchHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS---------LYHGQVVHGKAVVLGVDDDLLV 360 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 360 (696)
.++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4677888888888888888899999888899999999999988876554 5778889999999999999999
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999998886 578899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
.|++++|.++|++|.+. +..|+..+|+.+++.|...
T Consensus 188 ~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999874 9999999999998888653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=7.9e-27 Score=248.55 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNG 302 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 302 (696)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+...++ ...+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------------------~~~~ 84 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------------------SPNP 84 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS----------------------SCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh----------------------hhcc
Confidence 458889999999999999999999999999999999999999998887653321 2345
Q ss_pred ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh
Q 005454 303 KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 303 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 382 (696)
..++|.++|++|...|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+|++||.+|++.|++++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC----CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 383 MMP----TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 383 ~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
+|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+...
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 886 5899999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-22 Score=218.69 Aligned_cols=425 Identities=10% Similarity=0.014 Sum_probs=291.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 005454 123 SYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYA 202 (696)
Q Consensus 123 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 202 (696)
.|..+...+.+.|++++|+..|+++.+.. ||..++..+..++...|+++.|...+..+++.+ +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 44555566666777777777777766543 566666666666667777777777777666654 234556666677777
Q ss_pred cCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHH---HHhcCCHHHH
Q 005454 203 KGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGA---CFQTGRIDDA 276 (696)
Q Consensus 203 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~---~~~~g~~~~A 276 (696)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-... .........+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777666543 22223333333333322222222222222221111111111110000 0011111111
Q ss_pred HHHHHhcc---------CC-ChhHHHHHHHHHHh---cCChhHHHHHHHHhcc-----CCCCCC--------ccchHHHH
Q 005454 277 GRLFHVIK---------EK-DNVCWTTMIVGYTQ---NGKEEDALILFNEMLS-----EDVRPD--------KFSISSVV 330 (696)
Q Consensus 277 ~~~~~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p~--------~~t~~~ll 330 (696)
...+.... .+ +...+......+.. .|++++|+..|+++.. ....|+ ..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 22222211 11 23444445554554 8999999999999887 322232 34566777
Q ss_pred HHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHH
Q 005454 331 SSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 331 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 407 (696)
..+...|+++.|...+..+.+.... ...+..+...|...|++++|...|+.+. +.+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 7888999999999999999988765 8888899999999999999999998765 3467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 408 ALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
|+..|++..+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++.
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999853 334678888889999999999999999999874 23456788899999999999999999998752
Q ss_pred C----CCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 488 H----KPN----SLIWSTLLSVCAM---KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 488 ~----~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
. .|+ ..+|..+...+.. .|++++|...++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 222 3488999999999 999999999999999999999999999999999999999999999988763
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=1.5e-21 Score=213.44 Aligned_cols=426 Identities=10% Similarity=0.015 Sum_probs=312.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 005454 121 SVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDM 200 (696)
Q Consensus 121 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 200 (696)
...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456677777888888888888888877652 3345567777777788888888888888887775 3367778888888
Q ss_pred HHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCCHHHHHH
Q 005454 201 YAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLG--LNPDEVTVSNILGACFQTGRIDDAGR 278 (696)
Q Consensus 201 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~A~~ 278 (696)
|...|++++|...|+.+. .+....+..+..+...+...+|...++++.... ..+........+..+....+.+.+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 888899999998886443 222233334455556666678888888875431 11111222344455667777777777
Q ss_pred HHHhccCCChh---HHHHHHHHHHhc--------CChhHHHHHHHHhccCCCCCCc--------cchHHHHHHHHhhcCc
Q 005454 279 LFHVIKEKDNV---CWTTMIVGYTQN--------GKEEDALILFNEMLSEDVRPDK--------FSISSVVSSCAKLASL 339 (696)
Q Consensus 279 ~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~ 339 (696)
.+......+.. .+..+...+... |++++|+.+|+++.+. .|+. .++..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 77666655443 344444333322 4789999999998864 3442 2355566677788999
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+.|...+..+.+.... ...+..+...|...|++++|...|+.+. +.+..+|..+...|...|++++|+..|++..
T Consensus 260 ~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 260 LDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999987644 7788889999999999999999998765 3467789999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CC--
Q 005454 417 QENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH----KP-- 490 (696)
Q Consensus 417 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p-- 490 (696)
+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...|...|++++|.+.++++.. .+
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 853 334578888889999999999999999999874 244567888999999999999999999987421 11
Q ss_pred --CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 491 --NSLIWSTLLSVCAMK----------GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 491 --~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
....+..+...+... |++++|...++++++.+|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 222344555667777 999999999999999999999999999999999999999999999987633
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.9e-22 Score=213.76 Aligned_cols=241 Identities=11% Similarity=-0.008 Sum_probs=189.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.... +..++..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHH
Confidence 3456677777788888888888888877643 33666667777777888888888888887776543 56677888888
Q ss_pred HHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
|...|++++|...|+.+. +.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHH
Confidence 888889988888888654 3466788888899999999999999999988742 334577888888899999999999
Q ss_pred HHHHHhHHhhCCCCC----hHHHHHHHHHHhc---cCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 445 NHFDSISAVHGITPS----LDHYACMINLLGR---SSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
.+++.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++.. .| +..+|..+...+...|++++|...+
T Consensus 393 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 393 KQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999988764322233 3488889999999 9999999999987432 33 5678899999999999999999999
Q ss_pred HHHHhcCCCCCchHHHH
Q 005454 516 RHLFELEPINAGPYIML 532 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~~l 532 (696)
+++++++|.++..+..+
T Consensus 473 ~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 473 EESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHCSSHHHHHHHH
T ss_pred HHHHHhccccHHHHHHH
Confidence 99999999988776665
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.9e-21 Score=206.02 Aligned_cols=333 Identities=13% Similarity=0.117 Sum_probs=243.9
Q ss_pred CchhHHHHHHHHHHcCCCHHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005454 189 GNVFVRNALTDMYAKGGEIDKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILG 265 (696)
Q Consensus 189 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 265 (696)
.+...+..+...|.+.|++++|..+|+++.. .+..+|..+...|...|++++|+..|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 3566677777777777777777777776643 355667777777777777777777777776653 223445555555
Q ss_pred HHHhcCCHHHHHHHHHhccCCC---h---hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 266 ACFQTGRIDDAGRLFHVIKEKD---N---VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 266 ~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
.|.+.|++++|...|+.+...+ . ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 5666666666666665554322 1 33444433311111 11123345667777
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+.|...+..+.+... .+..++..++.+|.+.|++++|...|+.+. +.+..+|..++..|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 778877777777654 367788888899999999999999988775 4577899999999999999999999999998
Q ss_pred HCCCCCCHH-HHHHH------------HHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhccCCHHH
Q 005454 417 QENLKPDSF-TFVSV------------LSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 417 ~~g~~p~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 478 (696)
+ ..|+.. .+..+ ...+.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++
T Consensus 239 ~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 K--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp H--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred H--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7 455543 33333 67889999999999999999874 344 4588999999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH------------HHHhhcC----
Q 005454 479 AVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS------------NMYAACG---- 540 (696)
Q Consensus 479 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g---- 540 (696)
|.+.++++. ..| +..+|..+..+|...|++++|...++++++++|.++.++..++ +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 999998853 344 6789999999999999999999999999999999999999999 5677777
Q ss_pred -ChhHHHHHHHH
Q 005454 541 -RWEDVASIRSS 551 (696)
Q Consensus 541 -~~~~A~~~~~~ 551 (696)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 45566666654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=2e-20 Score=199.47 Aligned_cols=376 Identities=11% Similarity=0.019 Sum_probs=240.8
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC
Q 005454 140 ALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN 219 (696)
Q Consensus 140 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 219 (696)
+...+.+.... -+.+...+..+...+...|++++|..++..+++.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444444433 13455678888899999999999999999999875 44788999999999999999999999999865
Q ss_pred ---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHH
Q 005454 220 ---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE----VTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWT 292 (696)
Q Consensus 220 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 292 (696)
.+..+|..+...|.+.|++++|.+.|+++.+.. |+. ..+..+...+... .+.
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~-------------------~~~ 147 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ-------------------RLR 147 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH-------------------HHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH-------------------HHH
Confidence 457789999999999999999999999998753 443 4555554331111 112
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
.+...+...|++++|+..|+++... .+.+..++..+..++...|+++.|...+..+.+... .+..++..++..|...|
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLG 225 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 2233344455555555555555442 122334444445555555555555555555554432 24555555666666666
Q ss_pred ChHHHHHHHhcCC--CC-CchHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHH
Q 005454 373 VTDDAWTVFNMMP--TR-NVVSWNSM------------INGYAQNGQDLEALALYDKLLQENLKPD-----SFTFVSVLS 432 (696)
Q Consensus 373 ~~~~A~~~~~~~~--~~-~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~ 432 (696)
++++|...|+.+. .| +...+..+ ...+...|++++|+..|+++.+ +.|+ ...+..+..
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH
Confidence 6666666665543 12 23333333 6777888888888888888877 3455 336677777
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH---------
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN-SLIWSTLLSV--------- 501 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~--------- 501 (696)
++.+.|++++|...++.+.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ..++..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 888888888888888887753 2335677888888888888888888888764 33454 4455555533
Q ss_pred ---HHhcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHhhcCChhH
Q 005454 502 ---CAMKG-----DIKHGEMAARH-LFELEPINAG----------PYIMLSNMYAACGRWED 544 (696)
Q Consensus 502 ---~~~~g-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 544 (696)
|...| +.+++.+.+++ .++..|++.. .+..+..+|...|+.+.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 22233 56777888886 6777776432 34455555555555443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.6e-20 Score=202.40 Aligned_cols=435 Identities=10% Similarity=0.008 Sum_probs=273.4
Q ss_pred cHHHHHHHHHHccCChHHHHHHHccCCC---CCcchHHHHHHHHHccCChhHHHHHHhcCC---CCCcchHHHHHHHHHh
Q 005454 60 FLHNRLLHFYAKSGKLFYARDLFDKMPL---RDIISWNALLSAHARSGSVQDLRALFDKMP---IRDSVSYNTAIAGFAN 133 (696)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 133 (696)
..+..+...+.+.|++++|...|+++.. .++.+|..+...|.+.|++++|.+.|+++. ..+...|..+...+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANES 105 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 4555666666666666666666666543 245566666666666666666666666553 1244556666666666
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCchhHHHHHHHHHHcCCCHHHHH
Q 005454 134 KGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNL--GGNVFVRNALTDMYAKGGEIDKAR 211 (696)
Q Consensus 134 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~ 211 (696)
.|++++|++.|+.+.. .|+... ..+..+...+....+...+..++.... .+........+..|....+.+.+.
T Consensus 106 ~g~~~~A~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 6666666666643221 222111 112222223333445555554433210 001111122333344455555555
Q ss_pred HHHHhcCCCChh---HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCC-
Q 005454 212 WLFDRMNNRNLV---SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKD- 287 (696)
Q Consensus 212 ~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~- 287 (696)
..+......+.. .+..+...+...+ -......|++++|..+|+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 444444432222 2222222221111 000011234555555555544321
Q ss_pred ---------hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 288 ---------NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 288 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
..+|..+...+...|++++|+..|+++... .|+...+..+...+...|+++.|...+..+.+.... +.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CH
Confidence 123555667778888888888888888864 455667777778888889999999999988887653 67
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
.++..+...|...|++++|...|+.+. +.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 788889999999999999999998765 3467789999999999999999999999998853 344568888889999
Q ss_pred cCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhcc----------CCHHHHHHHHHhCCC-C-CCHHHHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRS----------SDVDKAVDLIKSLPH-K-PNSLIWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~-~-p~~~~~~~ll 499 (696)
..|++++|...|+.+.+...-.++ ...+..+...|.+. |++++|...+++... . .+..+|..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998764211111 22344556777777 999999999987532 3 4567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
..+...|++++|...+++++++.|.++....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999999999999999998776544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=8.8e-18 Score=172.76 Aligned_cols=308 Identities=11% Similarity=0.042 Sum_probs=182.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhc
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQN 301 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 301 (696)
|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+.+. +.+...|..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 3444444444444444444444444432 1223344444444444455555554444433 12334455555555556
Q ss_pred CChhHHHHHHHHhccCCCCC---C-ccchHHH------------HHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRP---D-KFSISSV------------VSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
|++++|+..|+++.+. .| + ...+..+ ...+...|+++.|...+..+.+... .+..++..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHH
Confidence 6666666666655542 22 1 1112111 3455666777777777777766554 3566677777
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH------------H
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-FTFV------------S 429 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~------------~ 429 (696)
..|...|++++|...|+.+. +.+...|..+...|...|++++|...|++..+. .|+. .++. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHH
Confidence 77777888888877777654 345667777778888888888888888887763 3442 2222 2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--HHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSL--DHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMK 505 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~ 505 (696)
+...+...|++++|...++.+.+...-.|.. ..+..+...+...|++++|.+.+++... .| +..+|..+...+...
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 2445667777888888777776532111111 2344566777777777777777766422 33 566777777777777
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 506 GDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 506 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
|++++|...++++++++|+++..+..+..++..
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888887777777777766665543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=1.4e-17 Score=171.29 Aligned_cols=294 Identities=10% Similarity=0.036 Sum_probs=244.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHH
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSC 333 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 333 (696)
...+..+...+...|++++|...|+.+. +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 3456677788999999999999999876 3467789999999999999999999999998752 22456788888899
Q ss_pred HhhcCchhHHHHHHHHHHhCCC--CchHHHHHH------------HhhHHhcCChHHHHHHHhcCC---CCCchHHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVD--DDLLVSSAL------------IDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMI 396 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 396 (696)
...|+++.|...+..+.+.... .+...+..+ ...+...|++++|...|+.+. +.+...|..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999886541 244444444 578999999999999999875 45677899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH------------
Q 005454 397 NGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYA------------ 464 (696)
Q Consensus 397 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~------------ 464 (696)
..+...|++++|+..++++.+.. +.+..++..+...+...|++++|...|+.+.+.. +.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999853 4457888899999999999999999999998642 22223222
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC-CCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH-KPN-S----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~-~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
.+...+.+.|++++|.+.++++.. .|+ . ..+..+...+...|++++|...++++++.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 336779999999999999987432 343 2 2355677889999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 319 ~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQE 334 (359)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999876
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.6e-18 Score=175.65 Aligned_cols=368 Identities=10% Similarity=0.107 Sum_probs=172.7
Q ss_pred ccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCChHHHHHHHHH
Q 005454 102 RSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDLRRGKQIHGK 181 (696)
Q Consensus 102 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 181 (696)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6677888888888886654 7888888888888888888888653 5677888888888888888888887777
Q ss_pred HHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHH
Q 005454 182 IVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVS 261 (696)
Q Consensus 182 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 261 (696)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 44577888999999999999998888754 77789999999999999999999999976 4788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchh
Q 005454 262 NILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYH 341 (696)
Q Consensus 262 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 341 (696)
.+..++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. +.|+. ...++..|.+.|.+++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHH
Confidence 9999999999999999999988 488899999999999999999966555432 33433 4567888999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHh--cCChHHHHHHHhcCCC--------CCchHHHHHHHHHHHcCChHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCK--CGVTDDAWTVFNMMPT--------RNVVSWNSMINGYAQNGQDLEALAL 411 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l 411 (696)
+..+++..+... +-...+|+-|.-.|++ .+++.+..+.|..-.. .+...|..+.-.|.+.++++.|..
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~- 303 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII- 303 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH-
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH-
Confidence 999999988665 4567788888777775 5677788888875442 356789999999999999999886
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH-------------HHHhccCCHH
Q 005454 412 YDKLLQE-NLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI-------------NLLGRSSDVD 477 (696)
Q Consensus 412 ~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-------------~~~~~~g~~~ 477 (696)
.|.+. ...-+...|..++.--....-+-+|..++- .. .|. ..+-|. ..+.+.|.+.
T Consensus 304 --tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~ 373 (449)
T 1b89_A 304 --TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLP 373 (449)
T ss_dssp --HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTT
T ss_pred --HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcH
Confidence 44442 122233444444433333333333333332 11 122 233333 4444444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 510 (696)
-+..+++.+...-+..+-.+|-..+....|++.
T Consensus 374 l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~ 406 (449)
T 1b89_A 374 LVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 406 (449)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHH
Confidence 444444444333344444555555555555543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.9e-17 Score=166.79 Aligned_cols=285 Identities=13% Similarity=0.060 Sum_probs=183.2
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHH
Q 005454 221 NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVG 297 (696)
Q Consensus 221 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 297 (696)
+...+..+...+...|++++|+++|+++.... +.+...+..++..+...|+.++|..+++++.+ .+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44455566666666666777776666666543 22334444455555566666666666655442 244455555555
Q ss_pred HHhcC-ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHH
Q 005454 298 YTQNG-KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376 (696)
Q Consensus 298 ~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 376 (696)
+...| ++++|++.|+++... .. .+...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~-----------------------------------~~-~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL-----------------------------------EK-TYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT-----------------------------------CT-TCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh-----------------------------------CC-ccHHHHHHHHHHHHHccCHHH
Confidence 55555 556666665555542 21 133444555555555566666
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
|...|+.+. +.+...|..+...|...|++++|++.|++..+.. +.+..++..+...+...|++++|..+++.+.+.
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 655555443 2234556667777777777777777777777642 334566677777777777777777777777653
Q ss_pred hC-------CCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 454 HG-------ITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 454 ~~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.. .+.....+..+...|.+.|++++|.+.+++... . .+..+|..+...+...|++++|...++++++++|+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 21 133356778888888888888888888876422 2 35568888888899999999999999999999999
Q ss_pred CCchHHHHHHHH-hhcCChh
Q 005454 525 NAGPYIMLSNMY-AACGRWE 543 (696)
Q Consensus 525 ~~~~~~~l~~~~-~~~g~~~ 543 (696)
++..+..++.++ ...|+.+
T Consensus 303 ~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 303 DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHTTTTC--
T ss_pred chHHHHHHHHHHHHHhCchh
Confidence 998999998888 4555543
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.4e-14 Score=163.18 Aligned_cols=379 Identities=11% Similarity=0.124 Sum_probs=287.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC--CCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 005454 124 YNTAIAGFANKGFSREALQVFSRMQKDRF--EPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMY 201 (696)
Q Consensus 124 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 201 (696)
-...+++|...|.+.+|++++++....+- .-+...-+.++.+..+. +...+..+....- ......+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-------~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-------NYDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-------hccHHHHHHHH
Confidence 35667788899999999999999884321 01122233344444443 5555555555543 22244577788
Q ss_pred HcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 005454 202 AKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFH 281 (696)
Q Consensus 202 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 281 (696)
...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|.
T Consensus 1060 i~lglyEEAf~IYkKa~-~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88999999999999975 22233344433 678899999988854 346788999999999999999999996
Q ss_pred hccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHH
Q 005454 282 VIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVS 361 (696)
Q Consensus 282 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 361 (696)
+. .|...|..++..+.+.|++++|++.|....+.. ++....+.++.+|++.++++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 64 778888999999999999999999999877653 44444446888899998887544432 1 3455666
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE 441 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 441 (696)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+-.+|...|.+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 67999999999999999999985 48999999999999999999999876 35688999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CChHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMK--GDIKHGEMAARH 517 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 517 (696)
.|...... +..+.+.+..++..|.+.|.+++|+.+++.. ..+| ....|.-|...+.+. ++..++.+.|..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99886643 3456777889999999999999999999774 4344 344676666666554 567777888877
Q ss_pred HHhcCC-----CCCchHHHHHHHHhhcCChhHHHHH
Q 005454 518 LFELEP-----INAGPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 518 ~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
-..+.| .+...|..+.-+|.+.|+|+.|...
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 776666 6777899999999999999999854
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1e-15 Score=164.90 Aligned_cols=351 Identities=10% Similarity=0.027 Sum_probs=243.2
Q ss_pred cCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCCch
Q 005454 169 LLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAK----GGEIDKARWLFDRMNN-RNLVSWNLMISGYLK----NGQPK 239 (696)
Q Consensus 169 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~ 239 (696)
.++++.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..|...|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 455555555555555543 34455555555555 5666666666655443 344455555555555 55666
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhccC-CChhHHHHHHHHHHh----cCChhHHHHH
Q 005454 240 KCIDLFQEMQLLGLNPDEVTVSNILGACFQ----TGRIDDAGRLFHVIKE-KDNVCWTTMIVGYTQ----NGKEEDALIL 310 (696)
Q Consensus 240 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 310 (696)
+|+..|++..+.| +...+..+...|.. .++.++|...|++..+ .+...+..+...|.. .+++++|++.
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 209 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQW 209 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 6666666665554 34445555555554 5566666666665543 355566666666666 6777777777
Q ss_pred HHHhccCCCCCCccchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh----cCChHHHHHHHh
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK----CGVTDDAWTVFN 382 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 382 (696)
|++..+.| +...+..+...+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|...|+
T Consensus 210 ~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 210 YRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 77776543 33445555555554 567777777777776654 45566667777777 788999999988
Q ss_pred cCCC-CCchHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHhHHh
Q 005454 383 MMPT-RNVVSWNSMINGYAQN-----GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD---LFERGQNHFDSISAV 453 (696)
Q Consensus 383 ~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~ 453 (696)
...+ .+...+..+...|... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|++..+.
T Consensus 284 ~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 7654 4566778888888887 89999999999998865 4456666666666656 789999999998863
Q ss_pred hCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC-
Q 005454 454 HGITPSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPI- 524 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~- 524 (696)
.+...+..+..+|.. .+++++|.+.+++.....+...+..|...|.. .+|.++|...++++.+.+|+
T Consensus 361 ----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 ----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp ----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred ----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 467788888888888 89999999999886555577888889888887 89999999999999999954
Q ss_pred --CCchHHHHHHHHhh
Q 005454 525 --NAGPYIMLSNMYAA 538 (696)
Q Consensus 525 --~~~~~~~l~~~~~~ 538 (696)
++.+...|+.++..
T Consensus 437 ~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 437 FGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHTTSCHH
T ss_pred cCCHHHHHHHHhcCHh
Confidence 77777777777664
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=9.9e-17 Score=162.85 Aligned_cols=263 Identities=12% Similarity=0.017 Sum_probs=218.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
+...+..++..+...|++++|+++|+++.... +.+...+..++..+...|+.+.|...+..+.+.... +...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHH
Confidence 45556667777777788888888888877642 233445556677778888888888888888876543 6778888999
Q ss_pred hHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 367 MYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 367 ~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
.|...| ++++|...|+... +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 999999 9999999999765 3467789999999999999999999999999853 3345677778889999999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCChHHH
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-----------KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
|..+++.+.+ ..+.+...+..+...|.+.|++++|.+.+++... +.+..+|..+...+...|++++|
T Consensus 178 A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999986 3344578899999999999999999999876421 23456899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...+++++++.|.++.++..++.+|...|++++|.+.+++..+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999987754
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.76 E-value=2.4e-14 Score=161.29 Aligned_cols=440 Identities=10% Similarity=0.082 Sum_probs=278.4
Q ss_pred ChHHHHHHHHHhhccCchhHHHHHHHhhhhhccCC--Ccc-cHHHHHHH---------------------------HHHc
Q 005454 22 TEEAYTQLVLDCTRVNDVELAKRLQSHMDLNFYEP--NTT-FLHNRLLH---------------------------FYAK 71 (696)
Q Consensus 22 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-~~~~~li~---------------------------~~~~ 71 (696)
++.-.....+++. ..+.+.++++++.+++..+. ... ..-+.|+. .+..
T Consensus 984 ~PeeVs~~vKaf~--~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 984 DPEEVSVTVKAFM--TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAIS 1061 (1630)
T ss_pred CHHHhHHHHHHHH--hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHh
Confidence 3444556777777 77788888888877773322 122 44444443 3445
Q ss_pred cCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCC
Q 005454 72 SGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKDR 151 (696)
Q Consensus 72 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 151 (696)
.|.+++|..+|++... .....+.++ -..|++++|.++.++.. +..+|..+..++...|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred CCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 6666666666666531 112222222 25667777777777653 3556788888888888888888888664
Q ss_pred CCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHH
Q 005454 152 FEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISG 231 (696)
Q Consensus 152 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 231 (696)
-|...|..++.+|.+.|+++++.+++....+.. +++.+.+.++.+|++.+++++..... ..++...|..+...
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~ 1204 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDR 1204 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHH
Confidence 355677778888888888888888888777654 34334445888888888888544443 34566677778888
Q ss_pred HHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHH
Q 005454 232 YLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILF 311 (696)
Q Consensus 232 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 311 (696)
|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..++...|++..|....
T Consensus 1205 le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1205 CYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred HHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 88888888888888874 37888888888888888888888876 55678888888888888888887766
Q ss_pred HHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh--cCChHHHHHHHhcCCC---
Q 005454 312 NEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK--CGVTDDAWTVFNMMPT--- 386 (696)
Q Consensus 312 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--~g~~~~A~~~~~~~~~--- 386 (696)
..+ ..+...+..++..|...|.+++|..+++..+... +.....++-|...|++ .+++.++.+.|..-..
T Consensus 1274 l~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1274 LHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred Hhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 542 2344456677888888888888888887777655 3456667666666665 4566666666664332
Q ss_pred -----CCchHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 387 -----RNVVSWNSMINGYAQNGQDLEALALY-------------DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 387 -----~~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
.+...|..+...|.+.|+++.|.... ...+. -..|...|...+.-|.. ...++...+.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~--~~P~~lndLl 1423 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLE--FKPLLLNDLL 1423 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHh--hChHHHHHHH
Confidence 24557888888888888888887322 22111 13344555555554442 1222222222
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005454 449 SISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 507 (696)
... .|... +...+..+.+.|.+.-+..+++.....-+..+-.+|...+....|
T Consensus 1424 ~~l-----~~rlD-~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed 1476 (1630)
T 1xi4_A 1424 MVL-----SPRLD-HTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED 1476 (1630)
T ss_pred HHh-----hhcCC-hHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccc
Confidence 221 12221 234456666666666666666554433333333444444443333
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=5.2e-15 Score=160.96 Aligned_cols=208 Identities=7% Similarity=0.044 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHh-------cCChH-------HHHHHHhcCCC---C-CchHHHHHHHHHHHc
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCK-------CGVTD-------DAWTVFNMMPT---R-NVVSWNSMINGYAQN 402 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~li~~~~~~ 402 (696)
.+..+++.++...+ .+..+|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56678888888644 467888888888876 79987 89999997653 3 567899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHH-HhccCCHHH
Q 005454 403 GQDLEALALYDKLLQENLKPDS--FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINL-LGRSSDVDK 478 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 478 (696)
|++++|..+|+++++ +.|+. ..|...+..+.+.|++++|..+|++..+. .|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 46653 47888888888899999999999998853 333 3333333322 346899999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc----hHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG----PYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|..+|++.. ..| +...|..++..+...|+.++|..+++++++..|.++. .|...+......|+.+.+.++.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998643 234 5779999999999999999999999999998877665 6777888888999999999999988
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.8e-15 Score=160.37 Aligned_cols=350 Identities=13% Similarity=0.063 Sum_probs=295.3
Q ss_pred chhHHHHHHHHHHc----CCCHHHHHHHHHhcCC-CChhHHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCCcchH
Q 005454 190 NVFVRNALTDMYAK----GGEIDKARWLFDRMNN-RNLVSWNLMISGYLK----NGQPKKCIDLFQEMQLLGLNPDEVTV 260 (696)
Q Consensus 190 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 260 (696)
+......|...|.. .++++.|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66777778888888 8999999999988755 577788899999999 899999999999998875 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhccCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCCccchHHHHH
Q 005454 261 SNILGACFQ----TGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQ----NGKEEDALILFNEMLSEDVRPDKFSISSVVS 331 (696)
Q Consensus 261 ~~ll~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (696)
..+...|.. .++.++|...|+...+. ++..+..+...|.. .+++++|++.|++..+.| +...+..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 778888887 78999999999987654 67788888888887 789999999999998764 5666777777
Q ss_pred HHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHh----cCChHHHHHHHhcCCC-CCchHHHHHHHHHHH-
Q 005454 332 SCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCK----CGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQ- 401 (696)
Q Consensus 332 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~- 401 (696)
.+.. .++.+.|...+....+.+ +...+..|..+|.. .++.++|...|+...+ .+...+..+...|..
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 7776 789999999999999875 56778888888886 8999999999997654 566788888888888
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC-----CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc
Q 005454 402 ---NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA-----DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS 473 (696)
Q Consensus 402 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 473 (696)
.++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..+..+|.+.
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhC
Confidence 899999999999998865 455666677777766 8999999999998863 2456777888888776
Q ss_pred C---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCCh
Q 005454 474 S---DVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA----CGRW 542 (696)
Q Consensus 474 g---~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 542 (696)
| ++++|.+.+++.....+...+..|...|.. .++.++|...++++.+.+ ++.++..|+.+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 7 889999999886555678899999999988 899999999999999865 57889999999999 8999
Q ss_pred hHHHHHHHHhhhCCC
Q 005454 543 EDVASIRSSMKSKNV 557 (696)
Q Consensus 543 ~~A~~~~~~m~~~~~ 557 (696)
++|...+++..+.+.
T Consensus 420 ~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 420 VQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999988663
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=3.3e-17 Score=166.16 Aligned_cols=377 Identities=16% Similarity=0.126 Sum_probs=175.1
Q ss_pred ccCChHHHHHHHccCCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 005454 71 KSGKLFYARDLFDKMPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVFSRMQKD 150 (696)
Q Consensus 71 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 150 (696)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+. +|...|..++..+...|++++|+..++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 678899999999999555 48999999999999999999999764 56668899999999999999999977766653
Q ss_pred CCCCCcchHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHH
Q 005454 151 RFEPTDYTHVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMIS 230 (696)
Q Consensus 151 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 230 (696)
.++..+.+.++.++.+.|+++++.+++. .|+..+|+.+.+.|...|.+++|...|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 4567788889999999999998887774 367779999999999999999999999987 47899999
Q ss_pred HHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHH
Q 005454 231 GYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALIL 310 (696)
Q Consensus 231 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 310 (696)
++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|......+. ..+.....++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999987 377899999999999999999987777655 4444555688899999999999999
Q ss_pred HHHhccCCCCCCccchHHHHHHHHh--hcCchhHHHHHHHHHHhCCCC------chHHHHHHHhhHHhcCChHHHHHHHh
Q 005454 311 FNEMLSEDVRPDKFSISSVVSSCAK--LASLYHGQVVHGKAVVLGVDD------DLLVSSALIDMYCKCGVTDDAWTVFN 382 (696)
Q Consensus 311 ~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~y~~~g~~~~A~~~~~ 382 (696)
++..+... +-....|+-+.-++++ .+++.+..+.|.. +.+++| +...|..++..|.+-++++.|....-
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~ 306 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 306 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence 99987542 2233344444444443 3444444444432 112222 45678889999999999999887655
Q ss_pred cCCC---------------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 383 MMPT---------------RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 383 ~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
.-+. .|+..|...|.-|.. ....++.-+...+...+.| +.++.-+.+.|.+.-...++
T Consensus 307 ~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl 379 (449)
T 1b89_A 307 NHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYL 379 (449)
T ss_dssp HSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHH
T ss_pred hCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCc-----HHHHHHHHHcCCcHHHHHHH
Confidence 4431 345566666666652 2222222222222211222 23344445666666666666
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
..+... -+..+-.++-++|....+++.-..-++..
T Consensus 380 ~~v~~~----n~~~vnealn~l~ieeed~~~lr~si~~~ 414 (449)
T 1b89_A 380 RSVQNH----NNKSVNESLNNLFITEEDYQALRTSIDAY 414 (449)
T ss_dssp HHHHTT----CCHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHh----hHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 665532 23344455667777777777666666554
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.1e-16 Score=165.35 Aligned_cols=256 Identities=10% Similarity=0.035 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYC 369 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 369 (696)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++.|...+..+.+.... +..++..+...|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence 34455555555555555555555555431 223334444555555555555555555555554432 4555555666666
Q ss_pred hcCChHHHHHHHhcCCC---CCchHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHH
Q 005454 370 KCGVTDDAWTVFNMMPT---RNVVSWNS---------------MINGYAQNGQDLEALALYDKLLQENLKPD---SFTFV 428 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~~---~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~ 428 (696)
..|++++|...|+.+.. .+...+.. .+..+...|++++|+..|+++.+. .|+ ..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHHH
Confidence 66666666666654431 11111110 133333889999999999999884 444 77888
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g 506 (696)
.+...+...|++++|...|+.+.+. .+.+...+..++..|.+.|++++|.+.++++. .. .+..+|..+...+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 8999999999999999999998863 23457889999999999999999999998753 23 45779999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 507 DIKHGEMAARHLFELEPIN-----------AGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
++++|...+++++++.|.+ +.+|..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999999887 78899999999999999999998863
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=3.9e-16 Score=155.08 Aligned_cols=267 Identities=9% Similarity=-0.027 Sum_probs=183.7
Q ss_pred hcCCHHHHHHHHHhccCCCh----hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHH
Q 005454 269 QTGRIDDAGRLFHVIKEKDN----VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQV 344 (696)
Q Consensus 269 ~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 344 (696)
..|++..|...++.+...++ .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 34444444444444333221 1223344455555555555544432 123334444444555555555555555
Q ss_pred HHHHHHHhCC-CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 345 VHGKAVVLGV-DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 345 ~~~~~~~~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
.++.++..+. +.+...+..+...|...|++++|...|+. ..+...+..++..|.+.|+.++|.+.|+++.+. .|+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 5555555442 22455667778889999999999999998 567788999999999999999999999999985 466
Q ss_pred HHHH---HHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 005454 424 SFTF---VSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTL 498 (696)
Q Consensus 424 ~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 498 (696)
.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++. ...| +..+|..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4321 12233444669999999999999874 4567888999999999999999999999874 3345 56689999
Q ss_pred HHHHHhcCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHH
Q 005454 499 LSVCAMKGDIKH-GEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 499 l~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
+..+...|+.++ +.+.++++++++|+++.+. +...+.+.++++..-|
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 999999999865 6789999999999987643 4566666666665543
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.6e-15 Score=160.93 Aligned_cols=361 Identities=13% Similarity=0.029 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHcCCCHHHHHHHHHhcCC------------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHc-----C-C
Q 005454 192 FVRNALTDMYAKGGEIDKARWLFDRMNN------------RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLL-----G-L 253 (696)
Q Consensus 192 ~~~~~li~~~~~~g~~~~A~~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~ 253 (696)
..||.|...|...|+.++|++.|++..+ ...++|+.+...|...|++++|...+++..+. + .
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3455555555555555555555544311 12345556666666666666666665554331 0 0
Q ss_pred CC-CcchHHHHHHHHHhc--CCHHHHHHHHHhcc---CCChhHHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCC-c
Q 005454 254 NP-DEVTVSNILGACFQT--GRIDDAGRLFHVIK---EKDNVCWTTMIVG---YTQNGKEEDALILFNEMLSEDVRPD-K 323 (696)
Q Consensus 254 ~p-~~~t~~~ll~~~~~~--g~~~~A~~~~~~~~---~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~ 323 (696)
.+ ...++.....++.+. +++++|...|++.. +.++..+..+... +...++.++|++.+++.++. .|+ .
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~ 209 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ 209 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcch
Confidence 11 122333333333333 34666666666554 2234444444333 33456667777777766653 333 2
Q ss_pred cchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHH
Q 005454 324 FSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMI 396 (696)
Q Consensus 324 ~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 396 (696)
.++..+...+.. .++.+.|.+.+..+...... +..++..+...|.+.|++++|...|++.. +.+..+|..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 333333333322 35566777777777766543 55666777777777777777777777654 23444555555
Q ss_pred HHHHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC
Q 005454 397 NGYAQ-------------------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 397 ~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 457 (696)
..|.. .+..++|...|++..+.. +.+..++..+...+...|++++|+..|++..+. ...
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~ 366 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELT 366 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 55432 234567888888887743 334567788888999999999999999988763 222
Q ss_pred CCh--HHHHHHHH-HHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 458 PSL--DHYACMIN-LLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 458 p~~--~~~~~li~-~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
|.. ..+..+.. .+...|+.++|++.+++ +...|+...+... .+.++.++++.++.+|.++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 221 12333333 34578999999999876 3445665433322 34556778889999999999999999
Q ss_pred HHHhhcCChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 534 NMYAACGRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 534 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
.+|...|++++|.+.+++..+.+-......+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999988776555555664
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=1.1e-15 Score=157.91 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=164.5
Q ss_pred HHcCCCHHHHHH-HHHhcCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC
Q 005454 201 YAKGGEIDKARW-LFDRMNN--R-----NLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGR 272 (696)
Q Consensus 201 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 272 (696)
+...|++++|.. .|++... + +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...|...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 7876543 1 34568888889999999999999999998864 3456678888888999999
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHH----------------HHHHH
Q 005454 273 IDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISS----------------VVSSC 333 (696)
Q Consensus 273 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~----------------ll~~~ 333 (696)
+++|...|+.+. +.+..+|..+...|...|++++|++.|+++.... |+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 999999998765 3467788999999999999999999999998753 33222211 12222
Q ss_pred HhhcCchhHHHHHHHHHHhCCCC-chHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
...|+++.|...+..+.+..... +.. +|..+...|...|++++|+..|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPD-------------------------------VQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHH-------------------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHH-------------------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 24555555555555555443321 234 4444455555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP- 490 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p- 490 (696)
+++.+.. +.+..++..+...+...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|.+.++++.. .|
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 5544421 222344445555555555555555555555432 122344455555555555555555555543211 01
Q ss_pred -----------CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 491 -----------NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 491 -----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
...+|..+..++...|+.++|..++++.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 14566666666667777766666665443
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=1.3e-14 Score=157.73 Aligned_cols=406 Identities=10% Similarity=0.062 Sum_probs=279.9
Q ss_pred CcchHHHHHHHHHccCChhHHHHHHhcCCC--C-CcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 005454 89 DIISWNALLSAHARSGSVQDLRALFDKMPI--R-DSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSALNA 165 (696)
Q Consensus 89 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 165 (696)
|..+|..++. +.+.|+++.|+.+|+++.. | +...|...+..+.+.|++++|..+|+++.+. .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 7778999998 4788999999999998864 3 5567999999999999999999999999875 4776666666643
Q ss_pred H-HccCChHHHHH----HHHHHHHc-CCCC-chhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-CCh---hHH
Q 005454 166 C-AQLLDLRRGKQ----IHGKIVVG-NLGG-NVFVRNALTDMYAK---------GGEIDKARWLFDRMNN-RNL---VSW 225 (696)
Q Consensus 166 ~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~---~~~ 225 (696)
. ...|+.+.|.+ +++..+.. |..| +..+|...+....+ .|+++.|..+|++... |+. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 35577766655 66666553 5443 46677777776655 6788899999988765 321 233
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-------cc------CCC-----
Q 005454 226 NLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-------IK------EKD----- 287 (696)
Q Consensus 226 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-------~~------~~~----- 287 (696)
..........|. ..+..++. .+.++++.|..++.. +. .|+
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 322221100010 00101110 012334444444332 11 111
Q ss_pred ---hhHHHHHHHHHHhc----CCh----hHHHHHHHHhccCCCCCCccchHHHHHHHHh-------hcCch-------hH
Q 005454 288 ---NVCWTTMIVGYTQN----GKE----EDALILFNEMLSEDVRPDKFSISSVVSSCAK-------LASLY-------HG 342 (696)
Q Consensus 288 ---~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~-------~a 342 (696)
...|...+...... ++. ++++.+|++.+.. .+-+...|......+.. .|+++ .|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 23455555433222 222 3677788888764 23345556666666554 68876 88
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CC-Cc-hHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 343 QVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TR-NV-VSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|.++|++..+.
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888888863233468889999999999999999999999765 23 33 48999999999999999999999999884
Q ss_pred CCCCC-HHHHHHHHHH-HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC-
Q 005454 419 NLKPD-SFTFVSVLSA-CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP----HKPN- 491 (696)
Q Consensus 419 g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~- 491 (696)
.|+ ...|...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.. ..|+
T Consensus 386 --~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 386 --ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp --TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred --cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 343 3333332222 335899999999999998743 3457889999999999999999999998752 2332
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 492 -SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 492 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 458988898889999999999999999999884
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.2e-16 Score=165.21 Aligned_cols=260 Identities=12% Similarity=0.013 Sum_probs=189.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3446666666666677777777776666542 23445566666666667777777777777666543 246667777777
Q ss_pred HHhcCChHHHHHHHhcCCCC-------------CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMPTR-------------NVVSWNSMINGYAQNGQDLEALALYDKLLQENLK-PDSFTFVSVLSA 433 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a 433 (696)
|...|++++|...|+++... ....+..+...+...|++++|+..|+++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 77777777777777765421 1223445678888999999999999999885311 157788889999
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|.+.++++. ..| +..+|..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998863 24457889999999999999999999998753 244 477899999999999999999
Q ss_pred HHHHHHHHhcCCC------------CCchHHHHHHHHhhcCChhHHHHHHHH
Q 005454 512 EMAARHLFELEPI------------NAGPYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 512 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
...+++++++.|. +...+..++.++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999876 366799999999999999999887754
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=5.2e-16 Score=160.27 Aligned_cols=231 Identities=12% Similarity=0.046 Sum_probs=195.8
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHH
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMING 398 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 398 (696)
+...+......+...|+++.|...+..+++..+. +..++..+...|.+.|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 4556888889999999999999999999998754 78899999999999999999999999876 3567899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 399 YAQNGQDLEALALYDKLLQENLKPDSF-----------TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|..+|+++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999883 45432 223346788899999999999999987533223688999999
Q ss_pred HHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
..|.+.|++++|.+.+++... . .+..+|..+..++...|++++|...+++++++.|.++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999987532 3 46779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhC
Q 005454 546 ASIRSSMKSK 555 (696)
Q Consensus 546 ~~~~~~m~~~ 555 (696)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998763
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=7.4e-16 Score=156.13 Aligned_cols=255 Identities=9% Similarity=-0.010 Sum_probs=170.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG 372 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 372 (696)
.+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+.+... .+..++..+...|...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC
Confidence 33334444444444444444443321 11223333334444444444444444444444332 13444455555555555
Q ss_pred ChHHHHHHHhcCCC---CCchHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 373 VTDDAWTVFNMMPT---RNVVSWNSM--------------IN-GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 373 ~~~~A~~~~~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
++++|...|+.+.. .+...+..+ .. .+...|++++|++.++++.+.. +.+..++..+...+
T Consensus 104 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 55555555554331 111222222 22 3667788999999999988853 34567888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++. ..| +..+|..+...+...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999998863 23457788899999999999999999998743 233 5778999999999999999999
Q ss_pred HHHHHHHhcCCC------------CCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 513 MAARHLFELEPI------------NAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 513 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
..++++++..|. ++..+..++.+|...|++++|..++++.
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999998 6888999999999999999999998644
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=6.9e-15 Score=146.02 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=166.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcC
Q 005454 193 VRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTG 271 (696)
Q Consensus 193 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g 271 (696)
....+..+|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+.. .+..+...|...|
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 445567889999999999988877655667788889999999999999999999999887666654 4455557889999
Q ss_pred CHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHH----HHHHhhcCchhHHHHHH
Q 005454 272 RIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVV----SSCAKLASLYHGQVVHG 347 (696)
Q Consensus 272 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll----~~~~~~~~~~~a~~~~~ 347 (696)
++++|.+.+++ ..+...+..++..|.+.|++++|.+.|+++.+. .|+.. ...+. ..+...|++++|..+++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~ 190 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQ 190 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 99999999998 567888999999999999999999999999875 35542 22222 22333477778888888
Q ss_pred HHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHH-HHHHHHHHHHCCCCCC
Q 005454 348 KAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLE-ALALYDKLLQENLKPD 423 (696)
Q Consensus 348 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~ 423 (696)
.+.+..+ .+..+++.+..+|.+.|++++|...|++.. +.+..+|..++..+...|+.++ +.++++++.+ +.|+
T Consensus 191 ~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~ 267 (291)
T 3mkr_A 191 EMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRS 267 (291)
T ss_dssp HHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCC
Confidence 7777643 466677777777777777777777777654 3355567777777777777654 4566676666 4555
Q ss_pred HH
Q 005454 424 SF 425 (696)
Q Consensus 424 ~~ 425 (696)
..
T Consensus 268 ~~ 269 (291)
T 3mkr_A 268 HP 269 (291)
T ss_dssp CH
T ss_pred Ch
Confidence 43
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=4e-14 Score=143.29 Aligned_cols=222 Identities=14% Similarity=0.061 Sum_probs=109.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhc
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQN 301 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 301 (696)
|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...|+++. +.+...|..+...|...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3444445555555555555555554432 2233444445555555555555555555443 23455666777777777
Q ss_pred CChhHHHHHHHHhccCCCCCCccchHHHH--------------H--HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 302 GKEEDALILFNEMLSEDVRPDKFSISSVV--------------S--SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 302 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
|++++|++.++++... .|+.......+ . .+...|+++.|...+..+.+.... +..++..+.
T Consensus 103 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 103 HNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 8888888887777754 23222211111 1 144455555555555555554432 344444555
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..|.+.|++++|...|+.+. +.+...|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 55555555555555554432 2233444444555555555555555555544421 1223344444444444445555
Q ss_pred HHHHHHHhH
Q 005454 443 GQNHFDSIS 451 (696)
Q Consensus 443 a~~~~~~m~ 451 (696)
|.+.|+.+.
T Consensus 259 A~~~~~~a~ 267 (327)
T 3cv0_A 259 AAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444443
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=1.6e-16 Score=173.48 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=124.5
Q ss_pred cchHHHHHHHHHccCChhHHHHHHhcCC-------CCCcchHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 005454 90 IISWNALLSAHARSGSVQDLRALFDKMP-------IRDSVSYNTAIAGFANKGFSREALQVFSRMQKDRFEPTDYTHVSA 162 (696)
Q Consensus 90 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 162 (696)
..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3589999999999999999999997763 689999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHhCC
Q 005454 163 LNACAQLLDL-RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNN-----RNLVSWNLMISGYLKNG 236 (696)
Q Consensus 163 l~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 236 (696)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+-++...+++..+.. +.+.+.+.|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 78999999999999999999999999887776655555555444432 11334455666666555
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.62 E-value=3.2e-16 Score=171.15 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCCchHHHHHHHhhHHhcCChHHHHHHHhcCC-------CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 005454 354 VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP-------TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFT 426 (696)
Q Consensus 354 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 426 (696)
...-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33456789999999999999999999997653 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc-HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 427 FVSVLSACLHADL-FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 427 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
|+++|.++++.|. .++|.++|+.|.+. |+.||..+|++++....+.+-++.+.++.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999987 47889999999985 99999999999988777766555554443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.4e-13 Score=147.42 Aligned_cols=383 Identities=11% Similarity=0.000 Sum_probs=228.5
Q ss_pred CcchHHHHHHHHHhCCChhHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHHccCChHHHHHHHHHHHHcC-----
Q 005454 120 DSVSYNTAIAGFANKGFSREALQVFSRMQKD-----R--FEP-TDYTHVSALNACAQLLDLRRGKQIHGKIVVGN----- 186 (696)
Q Consensus 120 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 186 (696)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+.+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999987541 1 123 34578888889999999999999998877531
Q ss_pred -CC-CchhHHHHHHHHHHc--CCCHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHhCCCchHHHHHHHHHHHcCCCCC
Q 005454 187 -LG-GNVFVRNALTDMYAK--GGEIDKARWLFDRMNN--R-NLVSWNLMISG---YLKNGQPKKCIDLFQEMQLLGLNPD 256 (696)
Q Consensus 187 -~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~ 256 (696)
.. ....++..+..++.+ .+++++|...|++..+ | +...+..+... +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 11 123455555444544 4578999999988764 3 44455555444 445688889999998887753 223
Q ss_pred cchHHHHHHHHHh----cCCHHHHHHHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCc-cchHH
Q 005454 257 EVTVSNILGACFQ----TGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDK-FSISS 328 (696)
Q Consensus 257 ~~t~~~ll~~~~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ 328 (696)
..++..+...+.. .|+.++|.+.+++.. +.+...+..+...|...|++++|+..|.+..+. .|+. .++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHH
Confidence 4445555444444 456778888887654 346677888888999999999999999988763 4443 33333
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD 405 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 405 (696)
+...+...+... ... ............+..+.|...|+... +.+..+|..+...|...|++
T Consensus 287 lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccH
Confidence 333332211000 000 00011111122234566777776554 44567889999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSF--TFVSVLS-ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.+..+ +.|+........ ..+.++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~ 418 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHH
Confidence 99999999999854333221 2223322 24578999999999998875 456543332222 223333
Q ss_pred HHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 483 IKSL-PHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 483 ~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
++.. ... .+..+|..|...+...|++++|...++++++++|.+|.++..++
T Consensus 419 ~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 419 AKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 3332 122 35668999999999999999999999999999999888776654
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.9e-14 Score=135.02 Aligned_cols=224 Identities=11% Similarity=0.018 Sum_probs=160.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|+++.|...+..+.+.....
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------------ 71 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM------------ 71 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------------
Confidence 345556666666666666666666665543 444444444444444455554444444443321110
Q ss_pred HhcCChHHHHHHHhcCCCCC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMPTRN----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQ 444 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 444 (696)
.++ ...|..+...|...|++++|+..|++..+ +.|+.. .+...|++++|.
T Consensus 72 -----------------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~ 125 (258)
T 3uq3_A 72 -----------------RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKEL 125 (258)
T ss_dssp -----------------TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHH
Confidence 011 45677788888888888888888888887 455543 344567788888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 445 NHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 445 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..++.+.. ..+.+...+..+...+...|++++|.+.+++... +.+..+|..+...+...|++++|...++++++.+
T Consensus 126 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 126 KKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 88888875 2233456788888889999999999998877532 3457789999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.++..|..++.+|...|++++|.+.+++..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.56 E-value=9.4e-14 Score=131.51 Aligned_cols=194 Identities=14% Similarity=0.033 Sum_probs=152.3
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSV 430 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 430 (696)
+++...+..+...+.+.|++++|...|+... +.+...|..+...+.+.|++++|+..|++.++. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 3466677788888889999999999888654 346678888999999999999999999999884 454 5677888
Q ss_pred HHHHhcC-----------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 005454 431 LSACLHA-----------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSLIWSTL 498 (696)
Q Consensus 431 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l 498 (696)
..++... |++++|+..|++..+. -+-+...+..+..+|...|++++|++.|++.. ...+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998863 22346788889999999999999999998632 12678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 499 LSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 499 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
..++...|++++|...++++++++|+++.++..++.+|...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988754
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.2e-14 Score=135.62 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=163.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhccC--CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CC----ccchHH
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIKE--KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVR--PD----KFSISS 328 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~----~~t~~~ 328 (696)
...+..+...+...|++++|...|+...+ .+...|..+...|...|++++|++.+++..+.... |+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35677888889999999999999987653 66788999999999999999999999998763211 11 234444
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHH
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 408 (696)
+...+...|+++.|...+..+.+... + ...+...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~---------------------------------~-------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHR---------------------------------T-------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC---------------------------------C-------HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCc---------------------------------h-------hHHHHHHhHHHHH
Confidence 44444555555555555555444332 2 1234555667777
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
+..++++... .|+ ...+..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++..
T Consensus 125 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 125 LKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7777777663 333 345666666777777777777777777653 23346677777777788888888877776642
Q ss_pred -CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CCCCchHHHHHHH
Q 005454 488 -HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE------PINAGPYIMLSNM 535 (696)
Q Consensus 488 -~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 535 (696)
..| +..+|..+...+...|++++|...++++++++ |.+...+..+..+
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 233 46688888888899999999999999999888 7766666665543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.7e-13 Score=134.94 Aligned_cols=241 Identities=10% Similarity=-0.080 Sum_probs=184.6
Q ss_pred hcCChhHHHHHHHHhccCCCC---CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHH
Q 005454 300 QNGKEEDALILFNEMLSEDVR---PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDD 376 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 376 (696)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++.... +..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 456777888888777764221 13445666677777788888888888888776543 67788888889999999999
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
|...|++.. +.+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...+......
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999988765 34678899999999999999999999999988 4566655555555667779999999999888763
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN-----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.+++...+ .++..+...++.++|.+.+++... .|+ ..+|..+...+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 477778888899999999987543 232 568899999999999999999999999999997755
Q ss_pred hHHHHHHHHhhcCChhHHHHHH
Q 005454 528 PYIMLSNMYAACGRWEDVASIR 549 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~~A~~~~ 549 (696)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=3.8e-13 Score=142.53 Aligned_cols=339 Identities=12% Similarity=0.031 Sum_probs=178.9
Q ss_pred HHHHHHccCChHHHHHHHccCCCC-CcchHHHHHHHHHccCCh---hHHHHHHhcCCCCCcchHHHHHHHHHhCC-----
Q 005454 65 LLHFYAKSGKLFYARDLFDKMPLR-DIISWNALLSAHARSGSV---QDLRALFDKMPIRDSVSYNTAIAGFANKG----- 135 (696)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 135 (696)
+...+.+.|++++|.++|.+..++ ++..+..|..+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 445556667777777777665442 455556666666666666 77777777766556666666666555554
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCC----CHH
Q 005454 136 FSREALQVFSRMQKDRFEPTDYTHVSALNACAQLLDL---RRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGG----EID 208 (696)
Q Consensus 136 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~ 208 (696)
++++|+..|++..+.|.. ..+..+...+...+.. ..+.+.+......| ++.....|...|...+ ..+
T Consensus 89 ~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 667888888888776532 2455555555444432 23444444444444 3455666777777766 456
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCC---CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc----CCHHHHHHHHH
Q 005454 209 KARWLFDRMNNRNLVSWNLMISGYLKNG---QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQT----GRIDDAGRLFH 281 (696)
Q Consensus 209 ~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~A~~~~~ 281 (696)
.+..++......++.++..|...|...| +.++|++.|++..+.| .++...+..+...|... ++.++|...|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 6666777777767778888888888888 8888888888888876 23333334455555433 56677777766
Q ss_pred hccCCChhHHHHHHHH-H--HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCch
Q 005454 282 VIKEKDNVCWTTMIVG-Y--TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 282 ~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 358 (696)
.....++..+..+... | ...+++++|++.|++..+.| +.
T Consensus 242 ~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--------------------------------------~~ 283 (452)
T 3e4b_A 242 KIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--------------------------------------QP 283 (452)
T ss_dssp HHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--------------------------------------CH
T ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--------------------------------------CH
Confidence 6553345555555554 3 34556666666666655443 23
Q ss_pred HHHHHHHhhHHhcC-----ChHHHHHHHhcCCCCCchHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005454 359 LVSSALIDMYCKCG-----VTDDAWTVFNMMPTRNVVSWNSMINGYAQ----NGQDLEALALYDKLLQENLKPDSFTFVS 429 (696)
Q Consensus 359 ~~~~~li~~y~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 429 (696)
.....|..+|. .| +.++|...|++....++..+..|...|.. ..+.++|..+|++..+.| .|+ ....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHH
Confidence 33334444443 23 55555555555543344445555544444 225566666666655544 222 2223
Q ss_pred HHHHHhc----CCcHHHHHHHHHHhHH
Q 005454 430 VLSACLH----ADLFERGQNHFDSISA 452 (696)
Q Consensus 430 ll~a~~~----~g~~~~a~~~~~~m~~ 452 (696)
|...|.. ..+.++|..+|+...+
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 3333322 2355666666655544
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.51 E-value=7.9e-13 Score=140.09 Aligned_cols=373 Identities=9% Similarity=-0.015 Sum_probs=195.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCH---HHHHHHHHhcCCCChhHHHHHHHHHHhCC-----
Q 005454 165 ACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEI---DKARWLFDRMNNRNLVSWNLMISGYLKNG----- 236 (696)
Q Consensus 165 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 236 (696)
.+.+.|++++|.+++....+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3344555555555555555554 222333444455555665 66777666665555555555555444444
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHH---HHHHHHhcc-CCChhHHHHHHHHHHhcCChhHHHHHHH
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDD---AGRLFHVIK-EKDNVCWTTMIVGYTQNGKEEDALILFN 312 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~---A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~ 312 (696)
++++|+..|++..+.|. ...+..+...|...+..+. +.+.+.... ..+...+..+...|...+.++++.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 55677777777766552 2245555555554443222 223333222 2345566666666666665544444322
Q ss_pred HhccCCCCCCccchHHHHHHHHhhc---CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc----CChHHHHHHHhcCC
Q 005454 313 EMLSEDVRPDKFSISSVVSSCAKLA---SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC----GVTDDAWTVFNMMP 385 (696)
Q Consensus 313 ~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~ 385 (696)
...+.-...+...+..+...+...| +.++|...+....+.|.. +...+..|..+|... ++.++|...|+...
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222112223335566666666666 677777777777776643 444445566666544 67778888877666
Q ss_pred CCCchHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-----cHHHHHHHHHHhHHhhCCC
Q 005454 386 TRNVVSWNSMING-Y--AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD-----LFERGQNHFDSISAVHGIT 457 (696)
Q Consensus 386 ~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~ 457 (696)
..++..+..+... | ...++.++|++.|++..+.| +...+..+...|. .| ++++|..+|++.. .
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~ 315 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G 315 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence 4455667777666 3 45678888888888887765 4555555555555 34 7788888777654 2
Q ss_pred CChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchH
Q 005454 458 PSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 458 p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
-+...+..|..+|.. ..++++|.++|++.-...+......|...|.. ..|.++|...++++.+.++......
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~ 395 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDL 395 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 345566666666655 34778888888765444444455556555553 4577888888888777665333222
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhh
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
...+......++.++|.++.++-+
T Consensus 396 l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 396 ATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 222222233345555665555443
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=5.4e-13 Score=131.13 Aligned_cols=251 Identities=12% Similarity=0.017 Sum_probs=136.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccc----hHHHHH
Q 005454 259 TVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFS----ISSVVS 331 (696)
Q Consensus 259 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~ 331 (696)
.+......+...|++++|...|+...+ .+...|..+...|...|++++|++.+++..+.+ ++... +..+..
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 344455566677777777777766542 244466666677777777777777777766532 22222 455555
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 408 (696)
.+...|+++.|...+..+.+.... +..++..+...|...|++++|...|++... .+...|..+...+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655432 344555555555555555555555555442 2333444444122223355555
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHH
Q 005454 409 LALYDKLLQENLKPD-SFTFVSVLSACLHADL---FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIK 484 (696)
Q Consensus 409 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 484 (696)
++.|++..+. .|+ ...+..+..++...|+ +++|...++.+.+...-.|+.. -
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~--------------------- 217 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K--------------------- 217 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H---------------------
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h---------------------
Confidence 5555555542 222 2333333333333333 3334444433332211111100 0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 485 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
.....+|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 218 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 ----DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888899999999999999999999999988888776665544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=1.8e-12 Score=133.08 Aligned_cols=243 Identities=9% Similarity=0.014 Sum_probs=190.6
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC-ccchHHHHHHHHhhcC-chhHHHHHHHHHHhCCCCchHHHHHHH
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPD-KFSISSVVSSCAKLAS-LYHGQVVHGKAVVLGVDDDLLVSSALI 365 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li 365 (696)
...|..+...+...|++++|++.|++.+.. .|+ ...|..+..++...|+ +++|...+..+++.... +..+|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 345777777788888888888888888763 343 4556667777777885 88888888888887664 677888888
Q ss_pred hhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhc-CCcH
Q 005454 366 DMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLH-ADLF 440 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~ 440 (696)
.+|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++. .| +...|..+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 88888899999998888775 457778999999999999999999999999984 45 45788888888888 6665
Q ss_pred HHH-----HHHHHHhHHhhCCCC-ChHHHHHHHHHHhccC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-----
Q 005454 441 ERG-----QNHFDSISAVHGITP-SLDHYACMINLLGRSS--DVDKAVDLIKSLPHKP-NSLIWSTLLSVCAMKG----- 506 (696)
Q Consensus 441 ~~a-----~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g----- 506 (696)
++| +..|+++.+. .| +...|..+..+|...| ++++|.+.++++...| +...+..|...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 4778877753 34 4678888889998888 6899999988874444 4568888888888764
Q ss_pred ---C-hHHHHHHHHHH-HhcCCCCCchHHHHHHHHhh
Q 005454 507 ---D-IKHGEMAARHL-FELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 507 ---~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 538 (696)
+ +++|..+++++ ++++|.....|..++..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 99999998888888776654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=2.9e-12 Score=124.27 Aligned_cols=196 Identities=9% Similarity=-0.022 Sum_probs=144.6
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
...+..+...|...|++++|...|+.+. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4555666677777777777777777654 3355677777777888888888888888877742 33456677777777
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
...|++++|.++++.+.+ .+..| +...+..+...|...|++++|.+.+++... .| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888887765 22344 356677777888888888888888776422 23 466778888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
...++++++..|.++..+..++.+|...|++++|.+.++++.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887653
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=1.5e-11 Score=120.85 Aligned_cols=224 Identities=13% Similarity=-0.002 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh----hcCchhHHHHHHHHHHhCCCCchHHHH
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSS 362 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 362 (696)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .++++.|...+..+.+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 4555666666677777777777777766652 122333334444444 444444444444444432
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ----NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH-- 436 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 436 (696)
+..++..+...|.. .+++++|+..|++..+.+ +..++..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34455555555555 666666666666666543 44555555555655
Q ss_pred --CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 005454 437 --ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KG 506 (696)
Q Consensus 437 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g 506 (696)
.+++++|..+|++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666552 2 34455556666655 66777777666654333455666667777777 77
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----cCChhHHHHHHHHhhhCC
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAA----CGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 556 (696)
++++|...++++++.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777777765 5567777777777 777777777777776644
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=4.5e-12 Score=120.25 Aligned_cols=196 Identities=10% Similarity=0.009 Sum_probs=151.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..++..+...|...|++++|...|+.+. +.+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566677777778888888888777654 3456677888888888888888888888887743 3356677777788
Q ss_pred HhcC-CcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChH
Q 005454 434 CLHA-DLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIK 509 (696)
Q Consensus 434 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~ 509 (696)
+... |++++|..+++.+.+ .+..|+ ...+..+...+...|++++|.+.++++.. .| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 233343 56777788888888888888888876432 33 4667888888888889999
Q ss_pred HHHHHHHHHHhcCC-CCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 510 HGEMAARHLFELEP-INAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 510 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...++++++..| .++..+..++.++...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999888888 8888888888888889999998888888765
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=1.1e-11 Score=120.29 Aligned_cols=206 Identities=15% Similarity=0.050 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhh
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDM 367 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 367 (696)
...|..+...+...|++++|++.|+++... .. .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------------------~~-~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----------------------------------DP-SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----------------------------------CT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------------------------CC-ChHHHHHHHHHH
Confidence 345666666666666666666666666543 21 134445555566
Q ss_pred HHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 443 (696)
|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666665543 23556677777888888888888888888877434454 45677777788888888888
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
..+|+.+.+. .+.+...+..++..|...|++++|.+.++++. . +.+...+..+...+...|+.++|...++++++.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888888763 23346778888888999999999998887743 2 345667888888899999999999999999999
Q ss_pred CCCCCchHHH
Q 005454 522 EPINAGPYIM 531 (696)
Q Consensus 522 ~p~~~~~~~~ 531 (696)
.|+++.....
T Consensus 239 ~p~~~~~~~~ 248 (252)
T 2ho1_A 239 YPGSLEYQEF 248 (252)
T ss_dssp CTTSHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9988765543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.2e-12 Score=126.04 Aligned_cols=195 Identities=12% Similarity=0.114 Sum_probs=134.4
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
....+..+...+...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 34555566667777777777777777654 2355677777888888888888888888877742 3345677777777
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887763 234566777788888888888888888876432 23566788888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...++++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888888888888888888888888888888888888888765
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=1.7e-11 Score=120.46 Aligned_cols=226 Identities=11% Similarity=-0.010 Sum_probs=161.3
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhccCC-ChhHHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCCccchHHHH
Q 005454 256 DEVTVSNILGACFQTGRIDDAGRLFHVIKEK-DNVCWTTMIVGYTQ----NGKEEDALILFNEMLSEDVRPDKFSISSVV 330 (696)
Q Consensus 256 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 330 (696)
+..++..+...|...|++++|...|++..++ +...+..+...|.. .+++++|++.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4567778888899999999999999987754 66788889999999 999999999999998765 555666666
Q ss_pred HHHHh----hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHH----c
Q 005454 331 SSCAK----LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQ----N 402 (696)
Q Consensus 331 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~ 402 (696)
..+.. .++.+.|...+..+.+.+ +.. ++..+...|.. .
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------------a~~~lg~~~~~~~~~~ 127 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------------GCASLGGIYHDGKVVT 127 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH-------------------------------HHHHHHHHHHHCSSSC
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---Ccc-------------------------------HHHHHHHHHHcCCCcc
Confidence 66666 667777777766666543 333 44444455555 5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cC
Q 005454 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SS 474 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g 474 (696)
+++++|+..|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|.. .+
T Consensus 128 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 128 RDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCC
T ss_pred cCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCc
Confidence 66666666666666644 34445555555555 66777777777766652 234556666777777 77
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCC
Q 005454 475 DVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 475 ~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~ 525 (696)
++++|.+.+++.....+...+..|...+.. .+++++|...++++++++|++
T Consensus 201 ~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 777777777764333346677778888887 889999999999999988754
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.3e-12 Score=125.77 Aligned_cols=181 Identities=8% Similarity=0.028 Sum_probs=133.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+...+..+...|.+.|++++|...|+.+. +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 134 (243)
T 2q7f_A 56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTV 134 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455555566666666666666665543 2355677777788888888888888888887743 3456677777788
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|++++|
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 212 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence 88888888888888888763 234567788888888899999999888876432 23567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
...++++++++|+++.++..++.+....|
T Consensus 213 ~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 213 LEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 99999999999999888887776654443
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=5.1e-12 Score=119.47 Aligned_cols=192 Identities=16% Similarity=0.037 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhH
Q 005454 289 VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMY 368 (696)
Q Consensus 289 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 368 (696)
..|..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++.+++..+. +...+..+...|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444445555555555555555544321 112233334444444444444444444444444332 344444455555
Q ss_pred Hhc-----------CChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 369 CKC-----------GVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 369 ~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
.+. |++++|...|++.. +.+...|..+...|...|++++|+..|++.++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 554 55555555555443 2234455566666666666666666666666644 4555566666666
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
...|++++|+..|+.+.+. -+.+...+..+..++.+.|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666542 1223455555666666666666666655543
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=3.2e-11 Score=118.30 Aligned_cols=226 Identities=11% Similarity=-0.024 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccC--CCh----hHHHHHHH
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKE--KDN----VCWTTMIV 296 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~ 296 (696)
..+......+...|++++|+..|++..+.. +.+...+..+...|...|++++|...|+...+ ++. ..|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999998864 23455888899999999999999999998765 222 24889999
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHH-hhHHhcCChH
Q 005454 297 GYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALI-DMYCKCGVTD 375 (696)
Q Consensus 297 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~~~ 375 (696)
.+...|++++|++.|++..+.. +.+..++..+...+...|+++.|...+..+++... .+...+..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998752 33556788889999999999999999999988743 3667777777 5554 45999
Q ss_pred HHHHHHhcCC---CCCchHHHHHHHHHHHcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhcCCcHHH
Q 005454 376 DAWTVFNMMP---TRNVVSWNSMINGYAQNGQ---DLEALALYDKLLQEN-LKPDS------FTFVSVLSACLHADLFER 442 (696)
Q Consensus 376 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~~ 442 (696)
+|...|+.+. +.+...|..+...+...|+ .++|...|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999776 3456788888889998888 888999999987732 12432 466667777788888888
Q ss_pred HHHHHHHhHH
Q 005454 443 GQNHFDSISA 452 (696)
Q Consensus 443 a~~~~~~m~~ 452 (696)
|.++|+.+.+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=1.8e-11 Score=116.07 Aligned_cols=208 Identities=12% Similarity=0.023 Sum_probs=146.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 287 DNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 287 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
+...|..+...+...|++++|++.|+++.+. .. .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~~-~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------DP-KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------CT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------Cc-cchHHHHHHHH
Confidence 3445666666666666666666666666543 21 12344555555
Q ss_pred hHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHH
Q 005454 367 MYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQN-GQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFE 441 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 441 (696)
.|...|++++|...|+.+. +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5666666666666665543 23556677777888888 888888888888877333444 456777777888888888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--C-CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 442 RGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--K-PNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 442 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
+|...++.+.+. .+.+...+..++..+.+.|++++|.+.+++... + .+...+..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888888763 233467788888888889999999888876432 2 45667777777888999999999999999
Q ss_pred HhcCCCCCchHHHH
Q 005454 519 FELEPINAGPYIML 532 (696)
Q Consensus 519 ~~~~p~~~~~~~~l 532 (696)
.+.+|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999888776554
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.41 E-value=1.4e-11 Score=126.47 Aligned_cols=225 Identities=9% Similarity=0.033 Sum_probs=190.7
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC-hHHHHHHHhcCC---CCCchHHHHHHHHH
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV-TDDAWTVFNMMP---TRNVVSWNSMINGY 399 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~ 399 (696)
..+..+...+...|+++.|...+..+++.... +..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34666677788899999999999999998764 78889999999999997 999999999876 45778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc-cCCHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR-SSDVD 477 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 477 (696)
...|++++|+..|+++++. .| +...|..+..++...|++++|+..|+++.+. -+-+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999994 45 4678889999999999999999999999873 23357889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC--------
Q 005454 478 KA-----VDLIKSL-PHKP-NSLIWSTLLSVCAMKG--DIKHGEMAARHLFELEPINAGPYIMLSNMYAACG-------- 540 (696)
Q Consensus 478 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 540 (696)
+| ++.+++. ...| +...|..+...+...| ++++|...++++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4666653 3345 5679999999998888 689999999998 899999999999999999975
Q ss_pred -ChhHHHHHHHHh-hh
Q 005454 541 -RWEDVASIRSSM-KS 554 (696)
Q Consensus 541 -~~~~A~~~~~~m-~~ 554 (696)
..++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.40 E-value=1.3e-11 Score=113.34 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=131.5
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACM 466 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 466 (696)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4556777888888888888888888888774 444 567777777888888888888888887653 23345667777
Q ss_pred HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 467 INLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
...+...+++++|.+.+++.. ..| +...|..+...+...|++++|...++++++++|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 788888888888888887642 233 566888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhC
Q 005454 545 VASIRSSMKSK 555 (696)
Q Consensus 545 A~~~~~~m~~~ 555 (696)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=1.5e-11 Score=120.80 Aligned_cols=215 Identities=13% Similarity=0.005 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhHHHHHHHHHHh
Q 005454 224 SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIK---EKDNVCWTTMIVGYTQ 300 (696)
Q Consensus 224 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 300 (696)
+|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++|...|+... +.+...|..+...|..
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 123 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 123 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence 34444444445555555555555444432 1233444444445555555555555554443 2345566677777777
Q ss_pred cCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHH
Q 005454 301 NGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTV 380 (696)
Q Consensus 301 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 380 (696)
.|++++|+..|+++.+. .|+.......+..+...|+.+.|...+..+...... +...+ .++..+...++.++|...
T Consensus 124 ~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK-EQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC-CSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-chHHH-HHHHHHHHhcCHHHHHHH
Confidence 77777777777777653 455444444445555667777777777666665432 22222 355566666667777777
Q ss_pred HhcCCCCC-------chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 381 FNMMPTRN-------VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 381 ~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
++.....+ ...|..+...|...|++++|...|++..+. .|+.. .....++...|++++|++.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~--~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNF--VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTC--HHHHHHHHHHHHHHHC----
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhH--HHHHHHHHHHHHHHhhHHHH
Confidence 76655432 356666777777777777777777777663 34321 11233444555555555443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=2.3e-12 Score=135.16 Aligned_cols=259 Identities=12% Similarity=0.011 Sum_probs=173.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCc-----cchHHHHHHHHhhcCchhHHHHHHHHHHh----C-CCCchHHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDVRPDK-----FSISSVVSSCAKLASLYHGQVVHGKAVVL----G-VDDDLLVSSA 363 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 363 (696)
+...+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+++. + ......++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 344455555555555555555543 2221 23444445555555555555555554442 1 1123455666
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC---------CCchHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT---------RNVVSWNSMINGYAQNGQ-----------------DLEALALYDKLLQ 417 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~ 417 (696)
+...|...|++++|...|++... ....+|..+...|...|+ +++|++.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777777777777777765542 123367777888888888 8888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 005454 418 E----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 418 ~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
. +-.|. ..++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.+++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11122 246777778888899999999999887653211122 23778888999999999999988876421
Q ss_pred ----CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 489 ----KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 489 ----~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.. ...++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 14578888889999999999999999998876443 34788999999999999999999988865
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=4.2e-12 Score=135.38 Aligned_cols=208 Identities=7% Similarity=-0.044 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCCh-HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVT-DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
+.+.+.+....... +.+...+..+...|...|++ ++|...|++.. +.+...|..+...|...|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444444333322 23566777777778888888 88888887654 345678899999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhcC---------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc--------CCHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLHA---------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS--------SDVDK 478 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 478 (696)
++ +.|+...+..+...+... |++++|+..|+++.+. -+.+...|..+..+|... |++++
T Consensus 164 l~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 88 468888888888899998 9999999999998863 233477888899999888 99999
Q ss_pred HHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLPH-KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~~-~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|.+.|++... .| +...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.++
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999987533 45 77799999999999999999999999999999999999999999999999999999866544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=4e-12 Score=132.74 Aligned_cols=196 Identities=12% Similarity=0.043 Sum_probs=133.6
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCC--------------------hHHHH
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQ--------------------DLEAL 409 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 409 (696)
.++..+...|...|++++|...|+.... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455566666666676666666655431 11 2366667777777777 77777
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHH
Q 005454 410 ALYDKLLQE----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 410 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.+++..+. +-.|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777765441 11122 235666777778888888888888877653221222 236777888888888888888
Q ss_pred HHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHH
Q 005454 481 DLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 481 ~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 546 (696)
..+++... .++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88765321 112 4477788888888899999999998888875443 446788899999999999999
Q ss_pred HHHHHhhh
Q 005454 547 SIRSSMKS 554 (696)
Q Consensus 547 ~~~~~m~~ 554 (696)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98887754
No 61
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.6e-09 Score=118.59 Aligned_cols=413 Identities=10% Similarity=0.007 Sum_probs=279.3
Q ss_pred CCcchHHHHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHhCCC---hhHHHHHHHHhHHCC-CCCCcchHH
Q 005454 88 RDIISWNALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFANKGF---SREALQVFSRMQKDR-FEPTDYTHV 160 (696)
Q Consensus 88 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~~t~~ 160 (696)
.|..+|..++....+.+.++.|+.+|+.+.. .....|..-+..-.+.++ ++.+.++|++..... ..|+...|.
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~ 143 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWL 143 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3889999999999999999999999998863 355678888888888898 999999999998753 237777777
Q ss_pred HHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHc---------CCCHHHHHHHHHhcCC-
Q 005454 161 SALNACAQLLDL--------RRGKQIHGKIVV-GNL-GGN-VFVRNALTDMYAK---------GGEIDKARWLFDRMNN- 219 (696)
Q Consensus 161 ~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~- 219 (696)
.-+.-..+.++. +...++|+.++. .|. .++ ..+|...+..... .++++.+.++|++...
T Consensus 144 ~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~i 223 (679)
T 4e6h_A 144 SYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223 (679)
T ss_dssp HHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhC
Confidence 777665555543 334577777664 366 543 5688888876543 3457888999988875
Q ss_pred CCh---hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-------ccC----
Q 005454 220 RNL---VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV-------IKE---- 285 (696)
Q Consensus 220 ~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~-------~~~---- 285 (696)
|.. .+|......--..+ ...+..++.+. ...++.|...+.. +..
T Consensus 224 P~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 224 PMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp CCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred ccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 211 23332222111111 11122222111 0112222222221 100
Q ss_pred ----------C--C------hhHHHHHHHHHHhcC-------ChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch
Q 005454 286 ----------K--D------NVCWTTMIVGYTQNG-------KEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340 (696)
Q Consensus 286 ----------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 340 (696)
| + ...|...+.---.++ ..+.+..+|++.+.. .+-+...|.....-+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 134555555433332 123456678877764 3445666777777777888888
Q ss_pred hHH-HHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-------------CC------------chHHHH
Q 005454 341 HGQ-VVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-------------RN------------VVSWNS 394 (696)
Q Consensus 341 ~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~ 394 (696)
.|. .+++.++...+ .+...+-.++....+.|+++.|..+|+.+.. |+ ...|..
T Consensus 361 ~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 996 99999987543 4677788888999999999999999987653 21 236888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc-CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc
Q 005454 395 MINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFVSVLSACLH-ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 472 (696)
.+....+.|..+.|..+|.+.++. + .+....|......-.+ .++.+.|..+|+...+.+ +-+...+...++....
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHh
Confidence 888888899999999999999885 2 1223334332222223 355899999999999854 3455667788898889
Q ss_pred cCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 473 SSDVDKAVDLIKSLPH-KP----NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~-~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
.|+.+.|..+|++... .| ....|...+.--..+|+.+.+..+.+++.+..|+++.
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 9999999999998543 34 2458999999889999999999999999999998753
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=9.3e-12 Score=126.01 Aligned_cols=259 Identities=12% Similarity=0.057 Sum_probs=171.0
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCc-----cchHHHHHHHHhhcCchhHHHHHHHHHHh----CCC-CchHHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDK-----FSISSVVSSCAKLASLYHGQVVHGKAVVL----GVD-DDLLVSSAL 364 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 364 (696)
...+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 34444555555555555555443 1221 23334444455555555555555544332 111 124456667
Q ss_pred HhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 005454 365 IDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQ--------------------DLEALALYDKL 415 (696)
Q Consensus 365 i~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m 415 (696)
...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777887777777765431 22 2367777778888888 88888888776
Q ss_pred HHC----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC
Q 005454 416 LQE----NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSL 486 (696)
Q Consensus 416 ~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 486 (696)
... +-.|. ..++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 11121 246677777888889999999998887653211122 247788888999999999999888764
Q ss_pred CC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 487 PH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 487 ~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
.. .++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.+++.
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 21 122 4577888889999999999999999998876543 337889999999999999999999988
Q ss_pred hhC
Q 005454 553 KSK 555 (696)
Q Consensus 553 ~~~ 555 (696)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 663
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=129.29 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQEN-LKPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
+|..+...|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 56666677777777777777777765421 0111 236666777777888888888888776543211111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI------NAG 527 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~ 527 (696)
.+..+...|...|++++|.+.+++... .++ ..++..+...+...|++++|...+++++++.+. ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 677788888888888888888765321 122 457788888999999999999999999887432 345
Q ss_pred hHHHHHHHHhhcCChh
Q 005454 528 PYIMLSNMYAACGRWE 543 (696)
Q Consensus 528 ~~~~l~~~~~~~g~~~ 543 (696)
++..++.+|...|+..
T Consensus 349 ~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhHhH
Confidence 6778888888888764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=2e-10 Score=115.11 Aligned_cols=219 Identities=9% Similarity=0.057 Sum_probs=154.4
Q ss_pred hHHHHHHHHhccCCCCCCccchHHHHHHHH-------hhcCc-------hhHHHHHHHHHHhCCCCchHHHHHHHhhHHh
Q 005454 305 EDALILFNEMLSEDVRPDKFSISSVVSSCA-------KLASL-------YHGQVVHGKAVVLGVDDDLLVSSALIDMYCK 370 (696)
Q Consensus 305 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 370 (696)
++|+.+|++.+.. .+-+...|......+. ..|+. ++|..+++.+++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 5666777776653 1223334444444443 24665 7778888877773222356678888888888
Q ss_pred cCChHHHHHHHhcCCC--C-Cch-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-cCCcHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPT--R-NVV-SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL-HADLFERGQN 445 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 445 (696)
.|++++|..+|++... | +.. .|..++..+.+.|+.++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887653 3 343 78888888888899999999999888753 233444444333322 3688999999
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 446 HFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH----KP--NSLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 446 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
+|+...+.. +.+...|..+++.+.+.|++++|..+|++... .| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 998887643 33567788888888888999999888877432 34 35688888888888899999999999999
Q ss_pred hcCCCCCc
Q 005454 520 ELEPINAG 527 (696)
Q Consensus 520 ~~~p~~~~ 527 (696)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 88887653
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=8.3e-11 Score=121.95 Aligned_cols=227 Identities=10% Similarity=0.029 Sum_probs=103.8
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCC-CCC----ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCC------chHHHH
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDV-RPD----KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDD------DLLVSS 362 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 362 (696)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34445566777777777766654210 111 1234444445555555555555555544421110 123444
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQE----NLKPD-SFTFV 428 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~ 428 (696)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 555555555555555555544331 11 124555555566666666666666555441 11122 23455
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhC---CCCChHHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHG---ITPSLDHYACMINLLGRSSD---VDKAVDLIKSLPHKPNS-LIWSTLLSV 501 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~ 501 (696)
.+...+...|++++|..+++...+... -+.....+..+...|...|+ +++|..++++....|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555555555666666555555443211 01111223344445555555 44555555444332221 133333444
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 005454 502 CAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~ 520 (696)
+...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 4444444444444444433
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.30 E-value=3.9e-11 Score=121.35 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
.+..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|..+++.......-.++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666666666666666554210 011 125566666677777777777777766542111111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.+..+...|...|++++|.+.+++... .++ ..++..+...+...|++++|...+++++++.+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 667777788888888888777765321 112 347778888889999999999999999887754
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.29 E-value=3.2e-11 Score=126.34 Aligned_cols=266 Identities=12% Similarity=0.029 Sum_probs=151.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhHHHH
Q 005454 228 MISGYLKNGQPKKCIDLFQEMQLLGLNPDE-----VTVSNILGACFQTGRIDDAGRLFHVIKE---------KDNVCWTT 293 (696)
Q Consensus 228 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ 293 (696)
+...+...|++++|+..|++..+.+ |+. ..+..+...|...|++++|...|++..+ .....+..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555555555555555555432 221 2344444445555555555555544321 12335666
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCC----CC-CccchHHHHHHHHhhcC----------chhHHHHHHHHHHhCCCCch
Q 005454 294 MIVGYTQNGKEEDALILFNEMLSEDV----RP-DKFSISSVVSSCAKLAS----------LYHGQVVHGKAVVLGVDDDL 358 (696)
Q Consensus 294 li~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~ 358 (696)
+...|...|++++|+..|++...... .| ...++..+...+...|+ .+.+...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~------------- 198 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------------- 198 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------------
Confidence 66777777777777777776654200 00 11123333333344444 1111110
Q ss_pred HHHHHHHhhHHhcCChHHHHHHHhcCC-------C--CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----H
Q 005454 359 LVSSALIDMYCKCGVTDDAWTVFNMMP-------T--RNVVSWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----S 424 (696)
Q Consensus 359 ~~~~~li~~y~~~g~~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~ 424 (696)
+++|...|++.. . .....|..+...|...|++++|+..|++..+... .++ .
T Consensus 199 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 199 ---------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 444443333221 1 0123566667777777777777777777655210 011 1
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----H
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITP----SLDHYACMINLLGRSSDVDKAVDLIKSLPH----KPN----S 492 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~ 492 (696)
.++..+...+...|++++|..+++.......-.. ....+..+...|...|++++|.+.+++... .++ .
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 2666777778888888888888877665321111 145677888888888888888888876421 112 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
.++..+...+...|++++|...+++++++.+
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 4778888899999999999999999998775
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=6.6e-11 Score=108.49 Aligned_cols=167 Identities=16% Similarity=0.085 Sum_probs=139.1
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSA 433 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 433 (696)
+..+|..+...|.+.|++++|+..|++.. +.++.+|..+...|.+.|++++|+..+++..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 56788888999999999999999998765 3467788999999999999999999999988743 3345667777778
Q ss_pred HhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a 511 (696)
+...++++.+...+...... .+.+...+..+...|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988763 34456788889999999999999999998743 244 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 005454 512 EMAARHLFELEPINA 526 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~ 526 (696)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 69
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.26 E-value=1.6e-08 Score=110.76 Aligned_cols=227 Identities=8% Similarity=-0.002 Sum_probs=139.3
Q ss_pred HHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHH-HHHHhcc---CCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 241 CIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAG-RLFHVIK---EKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 241 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
+..+|++.... ++-+...|......+...|+.++|. .+|++.. +.+...|-..+...-+.|++++|.++|++++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666554 2334555666666666667766675 6666554 23444566666667777777777777777664
Q ss_pred CC---------CCCC------------ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-Ch
Q 005454 317 ED---------VRPD------------KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VT 374 (696)
Q Consensus 317 ~g---------~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 374 (696)
.. -.|+ ...|...+....+.|.++.|+.++..+.+.-......+|...+.+-.++| +.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 31 0132 22466666666677778888888888877511122333433333334444 47
Q ss_pred HHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 005454 375 DDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP--DSFTFVSVLSACLHADLFERGQNHFDS 449 (696)
Q Consensus 375 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 449 (696)
+.|..+|+... ..+...|...+......|+.+.|..+|++.+.....+ ....|...+.--...|+.+.+..+.++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887665 3455667777777777888888888888887753222 124566666666677888888888888
Q ss_pred hHHhhCCCCChHHHHHHHHHHh
Q 005454 450 ISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 450 m~~~~~~~p~~~~~~~li~~~~ 471 (696)
+.+.. |+......+++-|.
T Consensus 567 ~~~~~---P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 567 FFEKF---PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHS---TTCCHHHHHHHHTC
T ss_pred HHHhC---CCCcHHHHHHHHhc
Confidence 87642 44444444555554
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=9.3e-11 Score=130.04 Aligned_cols=162 Identities=22% Similarity=0.282 Sum_probs=135.6
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-LDHYAC 465 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 465 (696)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++.+.|++++|+..|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 345778888888888888888888888887 4555 567888888888888888888888888753 344 678888
Q ss_pred HHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 466 MINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888899999999998888764 3345 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 005454 544 DVASIRSSMKS 554 (696)
Q Consensus 544 ~A~~~~~~m~~ 554 (696)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998887754
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.6e-10 Score=105.51 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=90.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC
Q 005454 395 MINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS 474 (696)
Q Consensus 395 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 474 (696)
+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+.+. .+.+...+..+...+...|
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhc
Confidence 3333444444444444444433321 122333444444444444444444444444431 1223344444555555555
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 475 DVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 475 ~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
++++|.+.++++.. +.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.+++.
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555544211 2345667777777788888888888888888888888888888888888888888888888777
Q ss_pred hh
Q 005454 553 KS 554 (696)
Q Consensus 553 ~~ 554 (696)
.+
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=1e-10 Score=121.32 Aligned_cols=225 Identities=11% Similarity=-0.051 Sum_probs=171.5
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHh----CCCC-chHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC-----chHHH
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVL----GVDD-DLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN-----VVSWN 393 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~-----~~~~~ 393 (696)
....+...|+++.|...+..+.+. +..+ ...++..+...|...|+++.|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445567889999999999999875 1111 346788899999999999999988876541 22 34788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CC-CCChHHHH
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVH---GI-TPSLDHYA 464 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~-~p~~~~~~ 464 (696)
.+...|...|++++|++.|++..+... .++ ..++..+...+...|++++|..+++...+.. +. +.....+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999999876310 122 2478888889999999999999999887621 22 22356788
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC------CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH------KPN-SLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~------~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+...|.+.|++++|.+.+++... .|. ...+..+...+...|+ +++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 999999999999999999976421 122 2235667777888888 77777777766 233445567889999
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998854
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=123.44 Aligned_cols=237 Identities=12% Similarity=0.098 Sum_probs=122.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHh------CC
Q 005454 288 NVCWTTMIVGYTQNGKEEDALILFNEMLSE-------DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVL------GV 354 (696)
Q Consensus 288 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~ 354 (696)
..+|..+...+...|++++|+..|+++.+. ........+..+...+...|+++.|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 446777788888888888888888887652 11112233444444455555555555555554432 11
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE------NLKPD-SFTF 427 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~ 427 (696)
.+ ....+|..+...|...|++++|+..|++..+. +-.|+ ..++
T Consensus 107 ~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 107 HP------------------------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp CH------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred Ch------------------------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 00 01234455555555556666666665555442 11122 2345
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHhh-----CCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCCC----------CCC
Q 005454 428 VSVLSACLHADLFERGQNHFDSISAVH-----GITP-SLDHYACMINLLGRSSDVDKAVDLIKSLPH----------KPN 491 (696)
Q Consensus 428 ~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~p~ 491 (696)
..+...+...|++++|..+++.+.+.. +..| ....+..+...|...|++++|.+.++++.. .+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 555556666666666666666655421 1012 134555666666666666666666654321 111
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 -------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 -------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...+..+...+...+.+.++...++++....|..+.++..++.+|...|++++|.+++++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222223334455566666677777777777777788888888888888888888877654
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=7.9e-10 Score=110.66 Aligned_cols=213 Identities=8% Similarity=0.027 Sum_probs=170.5
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHhhHH-------hcCCh-------HHHHHHHhcCCC----CCchHHHHHHHHHHH
Q 005454 340 YHGQVVHGKAVVLGVDDDLLVSSALIDMYC-------KCGVT-------DDAWTVFNMMPT----RNVVSWNSMINGYAQ 401 (696)
Q Consensus 340 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~li~~~~~ 401 (696)
+.|..+++++++..+ .+..+|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 567788888888654 36778888887775 35886 899999986543 355689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-ccCCHHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDS-F-TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLG-RSSDVDK 478 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 478 (696)
.|++++|.++|++.++ +.|+. . .|..+...+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 56654 3 7888888899999999999999999862 2334455554444422 3799999
Q ss_pred HHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 479 AVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFEL---EPI-NAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 479 A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
|.++|++... .| +...|..++..+...|++++|..+++++++. .|. ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999987532 23 5779999999999999999999999999996 443 5567889999999999999999999998
Q ss_pred hhCCC
Q 005454 553 KSKNV 557 (696)
Q Consensus 553 ~~~~~ 557 (696)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 76443
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=4.2e-10 Score=107.16 Aligned_cols=187 Identities=10% Similarity=-0.046 Sum_probs=98.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---C-CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---T-RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVL 431 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll 431 (696)
|+..+..+...|...|++++|...|+... + ++...|..+..++...|++++|+..|++.++ ..|+ ..++..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34555555666666666666666665443 2 4445555556666666666666666666665 2343 34555555
Q ss_pred HHHhcCCcHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 005454 432 SACLHADLFERGQNHFDSISAVHGITPSL-------DHYACMINLLGRSSDVDKAVDLIKSL-PHKPN---SLIWSTLLS 500 (696)
Q Consensus 432 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~ 500 (696)
..+...|++++|...++...+.. +.+. ..|..+...+...|++++|.+.+++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 55666666666666666655421 1112 33455555555556666666555543 22343 234444444
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+.. .+...++++..+.+.++..|..+ .....|.+++|...+++..+
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4432 23334445555544443333222 23334455888888887765
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=3.5e-11 Score=120.48 Aligned_cols=238 Identities=14% Similarity=0.121 Sum_probs=144.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhccC--------C---ChhHHHHHHHHHHhcCChhHHHHHHHHhccC------CC
Q 005454 257 EVTVSNILGACFQTGRIDDAGRLFHVIKE--------K---DNVCWTTMIVGYTQNGKEEDALILFNEMLSE------DV 319 (696)
Q Consensus 257 ~~t~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 319 (696)
..++..+...|...|++++|..+|+++.+ . ....+..+...|...|++++|+..+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678888889999999999999988764 2 2446888899999999999999999998763 11
Q ss_pred CC-CccchHHHHHHHHhhcCchhHHHHHHHHHHhC------CCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHH
Q 005454 320 RP-DKFSISSVVSSCAKLASLYHGQVVHGKAVVLG------VDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSW 392 (696)
Q Consensus 320 ~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 392 (696)
.| ...++..+...+...|+++.|...+..+.+.. ..|. ....|
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 23455666667777777777777777766531 1110 12234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh------CCCCC
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQE------NLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH------GITPS 459 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~ 459 (696)
..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+++.+.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44555555555555555555555442 11222 2345555556666666666666666655321 01111
Q ss_pred -------hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 460 -------LDHYACMINLLGRSSDVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 460 -------~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
...+..+...+...+.+.+|...++.... .| +..+|..+...|...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 12223333444556666666666666543 33 3458889999999999999999999999998774
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.18 E-value=1.3e-09 Score=103.78 Aligned_cols=205 Identities=11% Similarity=0.048 Sum_probs=160.9
Q ss_pred CCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHH
Q 005454 321 PDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMIN 397 (696)
Q Consensus 321 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 397 (696)
.|+..+......+...|+++.|...+..+++....++...+..+..+|.+.|++++|...|+... +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34567777888899999999999999999998875677777779999999999999999999775 335668999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHHHHHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPD-S-------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS---LDHYACM 466 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 466 (696)
.|...|++++|+..|++.++. .|+ . ..|..+...+...|++++|+..|+.+.+ +.|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 454 3 3577777888899999999999999874 4565 5678888
Q ss_pred HHHHhccCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 467 INLLGRSSDV--DKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 467 i~~~~~~g~~--~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...|...|+. ++|..+. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3332221 12333443333 345677899999999999999999888877776643
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.17 E-value=6.3e-09 Score=107.22 Aligned_cols=260 Identities=12% Similarity=0.069 Sum_probs=173.4
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCcc----chHHHHHHHHhhcCchhHHHHHHHHHHhCCC-Cc----hHHHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVRPDKF----SISSVVSSCAKLASLYHGQVVHGKAVVLGVD-DD----LLVSSALI 365 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li 365 (696)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+......... .+ ..+...+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777777766542111111 2334445566677777777777766553211 11 22345677
Q ss_pred hhHHhcCChHHHHHHHhcCCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 005454 366 DMYCKCGVTDDAWTVFNMMPT-------R----NVVSWNSMINGYAQNGQDLEALALYDKLLQENLK--P--DSFTFVSV 430 (696)
Q Consensus 366 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~l 430 (696)
..|...|++++|...+++... + ....+..+...+...|++++|...+++.....-. | ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 778888888888887775531 1 1235666778888999999999999988763211 1 12456677
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhccCCHHHHHHHHHhCCC-CCC-----HHHHHHHH
Q 005454 431 LSACLHADLFERGQNHFDSISAVHGITPSLDHYA-----CMINLLGRSSDVDKAVDLIKSLPH-KPN-----SLIWSTLL 499 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~~-~p~-----~~~~~~ll 499 (696)
...+...|++++|..+++.......-......+. ..+..+...|++++|...+++... .|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7788889999999999998875322111111121 234557789999999999987643 221 23567778
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINA------GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+...|++++|...++++++..+... ..+..++.+|...|+.++|...+++..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 888999999999999999887653322 3677889999999999999999988754
No 79
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=4.2e-10 Score=119.83 Aligned_cols=177 Identities=8% Similarity=-0.033 Sum_probs=153.7
Q ss_pred hHHHHHHHhcCC---CCCchHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHH
Q 005454 374 TDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQD-LEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFD 448 (696)
Q Consensus 374 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 448 (696)
++.+...++... ..+...|..+...|...|++ ++|++.|++.++. .|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555433 34677899999999999999 9999999999984 455 6789999999999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhcc---------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CChH
Q 005454 449 SISAVHGITPSLDHYACMINLLGRS---------SDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMK--------GDIK 509 (696)
Q Consensus 449 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~--------g~~~ 509 (696)
+..+ +.|+...+..+..+|... |++++|.+.+++.. ..| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9974 468888999999999999 99999999998753 234 577999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 510 HGEMAARHLFELEP---INAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 510 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+|...++++++++| .++.+|..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999988763
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=8.6e-10 Score=100.65 Aligned_cols=168 Identities=10% Similarity=-0.012 Sum_probs=143.3
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
...+..+...|...|++++|...|+.+.. .+...|..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 44566778889999999999999998874 366788999999999999999999999998853 44567888888899
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHH
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
...|++++|.++++.+.+. .+.+...+..+...+...|++++|.+.+++... +.+..+|..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999874 345678888999999999999999999987432 345678999999999999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 005454 513 MAARHLFELEPINAGP 528 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~ 528 (696)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.12 E-value=1e-08 Score=105.88 Aligned_cols=224 Identities=9% Similarity=0.008 Sum_probs=102.5
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCC-CC----ccchHHHHHHHHhhcCchhHHHHHHHHHHhCCC------CchHHHHH
Q 005454 295 IVGYTQNGKEEDALILFNEMLSEDVR-PD----KFSISSVVSSCAKLASLYHGQVVHGKAVVLGVD------DDLLVSSA 363 (696)
Q Consensus 295 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~ 363 (696)
...+...|++++|+..|++....... ++ ..++..+...+...|+++.|...+..+.+.... ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 34456677777777777776543111 11 123444444555555555555555554442110 01234444
Q ss_pred HHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQ-----ENLKPDSFTFVS 429 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 429 (696)
+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 55555555555555555543321 11 12444555555555555555555555544 21 111334444
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhccCC---HHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPS---LDHYACMINLLGRSSD---VDKAVDLIKSLPHKPNS-LIWSTLLSVC 502 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~ll~~~ 502 (696)
+...+.+.|++++|..++++..+...-.++ ...+..+...|...|+ +++|..++++....|+. ..+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 555555555555555555555442111111 2233344444444444 44555555443322221 1233334444
Q ss_pred HhcCChHHHHHHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLF 519 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~ 519 (696)
...|++++|...+++++
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 44444444444444433
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=6.9e-09 Score=107.18 Aligned_cols=216 Identities=10% Similarity=0.014 Sum_probs=147.5
Q ss_pred HHhcCCHHHHHHHHHhccC-----CC----hhHHHHHHHHHHhcCChhHHHHHHHHhccCCC-----CC-CccchHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKE-----KD----NVCWTTMIVGYTQNGKEEDALILFNEMLSEDV-----RP-DKFSISSVVS 331 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----~p-~~~t~~~ll~ 331 (696)
+...|++++|...|++... ++ ..++..+...|...|++++|+..+.+..+... .+ ...++..+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4566677777766665542 11 23566677777777777777777777654211 11 1234556666
Q ss_pred HHHhhcCchhHHHHHHHHHHhC----CC-CchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----C---CchHHHHHHHH
Q 005454 332 SCAKLASLYHGQVVHGKAVVLG----VD-DDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----R---NVVSWNSMING 398 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~----~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~---~~~~~~~li~~ 398 (696)
.+...|+++.|...+..+++.. .. ....++..+...|...|++++|...|++... . ...++..+...
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 7777788888888777766531 11 1234677788889999999999988886653 2 24567888899
Q ss_pred HHHcCChHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHhcCCc---HHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHH
Q 005454 399 YAQNGQDLEALALYDKLLQENL---KPD-SFTFVSVLSACLHADL---FERGQNHFDSISAVHGITPS-LDHYACMINLL 470 (696)
Q Consensus 399 ~~~~g~~~~A~~l~~~m~~~g~---~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~ 470 (696)
|.+.|++++|...+++..+..- .|. ...+..+...+...++ +.+|..+++.. +..|+ ...+..+...|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHH
Confidence 9999999999999999887321 222 2345555556777787 78888877763 22233 45677899999
Q ss_pred hccCCHHHHHHHHHhC
Q 005454 471 GRSSDVDKAVDLIKSL 486 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~ 486 (696)
...|++++|.+.+++.
T Consensus 347 ~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 9999999999998764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=1.1e-09 Score=107.74 Aligned_cols=198 Identities=14% Similarity=0.102 Sum_probs=122.2
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC-----------CCchHHHHHHHHHHHcCChHHHHHHHHHHHHC------C
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----------RNVVSWNSMINGYAQNGQDLEALALYDKLLQE------N 419 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 419 (696)
...++..+...|...|++++|...|++... ....+|..+...|...|++++|++.|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 345566667777777777777776665431 12346777777788888888888888777653 1
Q ss_pred CCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh-----CCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhCC-----
Q 005454 420 LKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH-----GITP-SLDHYACMINLLGRSSDVDKAVDLIKSLP----- 487 (696)
Q Consensus 420 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----- 487 (696)
-.|+ ..++..+...+...|++++|..+++++.+.. +-.| ....+..+...|.+.|++++|.+.+++..
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1232 4566777777888888888888888776531 1122 24567778888888888888888876532
Q ss_pred -----CCCC-HHHHHHHHHHHHhcCC------hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 488 -----HKPN-SLIWSTLLSVCAMKGD------IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 488 -----~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+. ...|..+.......+. +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 2234433333333222 23333333333333355556788999999999999999999988754
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=2.5e-07 Score=95.12 Aligned_cols=159 Identities=9% Similarity=-0.033 Sum_probs=76.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCC--C--CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHH----H
Q 005454 293 TMIVGYTQNGKEEDALILFNEMLSEDVR--P--DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVS----S 362 (696)
Q Consensus 293 ~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~----~ 362 (696)
.+...+...|++++|...+++....... + ...++..+...+...|+++.|...+.........++ .... .
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 3444445555555555555554432111 0 011233334444455555555555555443311111 1111 1
Q ss_pred HHHhhHHhcCChHHHHHHHhcCCCCCc-------hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHH
Q 005454 363 ALIDMYCKCGVTDDAWTVFNMMPTRNV-------VSWNSMINGYAQNGQDLEALALYDKLLQE----NLKPDS-FTFVSV 430 (696)
Q Consensus 363 ~li~~y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~l 430 (696)
..+..+...|+.++|...++....++. ..+..+...+...|++++|...+++.... |..++. .++..+
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 233446677777777777776653221 13455666677777777777777665442 111111 133334
Q ss_pred HHHHhcCCcHHHHHHHHHHhH
Q 005454 431 LSACLHADLFERGQNHFDSIS 451 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~ 451 (696)
..++...|+.++|...++...
T Consensus 300 a~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666555544
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=1.4e-08 Score=98.86 Aligned_cols=204 Identities=12% Similarity=0.065 Sum_probs=121.6
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-C---chHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-N---VVSWNSMINGYAQNGQDLEALALYDKLLQENL-KPD-SFTFV 428 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 428 (696)
+...+..+...+.+.|++++|...|+.+.. | + ...+..+..+|.+.|++++|+..|++.++... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555566666666666666665542 2 2 33555556666666666666666666655311 111 23344
Q ss_pred HHHHHHhc--------CCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 005454 429 SVLSACLH--------ADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLL 499 (696)
Q Consensus 429 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll 499 (696)
.+..++.. .|++++|+..|+.+.+.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 44445555 566666666666655432 221 1111111100000000 01245677
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhc----------CChhHHHHHHHHhhhCCCcCCCceeEE
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAAC----------GRWEDVASIRSSMKSKNVKKFAAYSWI 566 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~i 566 (696)
..+...|+++.|...++++++..|+++ .++..++.+|... |++++|...+++..+...
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--------- 226 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--------- 226 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC---------
Confidence 889999999999999999999999855 4788999999877 999999999999876332
Q ss_pred EECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 567 EIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 567 ~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
.+|...+....+.++...+.+
T Consensus 227 --------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 --------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp --------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred --------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666667776666654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=7.5e-09 Score=102.57 Aligned_cols=164 Identities=7% Similarity=-0.024 Sum_probs=84.8
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQN-GQDLEALALYDKLLQENLKPD------ 423 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~------ 423 (696)
+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344444555555555555554443321 11 23456666666664 7777777777766552 111
Q ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-----HHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCHH---
Q 005454 424 -SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-----DHYACMINLLGRSSDVDKAVDLIKSLP-HKPNSL--- 493 (696)
Q Consensus 424 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~--- 493 (696)
..++..+...+...|++++|+.+|+...+...-.+.. ..|..+..++...|++++|...+++.. ..|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2345566666667777777777776666531111111 134555666666677777766666532 233211
Q ss_pred ---HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCC
Q 005454 494 ---IWSTLLSVCA--MKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 494 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
.+..++.++. ..+++++|...++++.+++|..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 2333444443 2345666666666666666543
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=6.4e-09 Score=103.06 Aligned_cols=200 Identities=9% Similarity=-0.024 Sum_probs=145.4
Q ss_pred CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CC----chHHHHHHHHHHHcCChHHH
Q 005454 338 SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RN----VVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 338 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A 408 (696)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 4467788999999888876542 12 45889999999999999999
Q ss_pred HHHHHHHHHCCC---CCC--HHHHHHHHHHHhcC-CcHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHH
Q 005454 409 LALYDKLLQENL---KPD--SFTFVSVLSACLHA-DLFERGQNHFDSISAVHGITPS----LDHYACMINLLGRSSDVDK 478 (696)
Q Consensus 409 ~~l~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 478 (696)
+..|++.++... .+. ..++..+...+... |++++|+..|++..+...-..+ ...+..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876210 111 34788888899996 9999999999998764211111 3568889999999999999
Q ss_pred HHHHHHhCCC-C---CCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCch-----HHHHHHHHh--hcCCh
Q 005454 479 AVDLIKSLPH-K---PNS-----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGP-----YIMLSNMYA--ACGRW 542 (696)
Q Consensus 479 A~~~~~~~~~-~---p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~ 542 (696)
|.+.+++... . +.. ..|..+..++...|+++.|...+++.++++|..... +..++..|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987421 2 221 156778888899999999999999999999976653 344566664 56788
Q ss_pred hHHHHHHHHh
Q 005454 543 EDVASIRSSM 552 (696)
Q Consensus 543 ~~A~~~~~~m 552 (696)
++|.+.++++
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8988888654
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=6.4e-09 Score=115.35 Aligned_cols=162 Identities=12% Similarity=0.155 Sum_probs=134.4
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLS 432 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 432 (696)
+...++.|...|.+.|++++|+..|++.. ..+..+|+.+...|.+.|++++|++.|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678888888888888888888888765 34567888899999999999999999999888 4565 578888888
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIK 509 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 509 (696)
++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++. ...| +...|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999988763 34 4678889999999999999999999874 3355 4668899999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 005454 510 HGEMAARHLFELEP 523 (696)
Q Consensus 510 ~a~~~~~~~~~~~p 523 (696)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999888654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.93 E-value=6.8e-08 Score=93.90 Aligned_cols=175 Identities=8% Similarity=0.008 Sum_probs=126.3
Q ss_pred HHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 377 AWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 377 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 2445556677788888899999999998887754322 345677777888899999999999988865
Q ss_pred hhCCCC-----ChHHHHHHHHH--Hh--ccCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 005454 453 VHGITP-----SLDHYACMINL--LG--RSSDVDKAVDLIKSLPHK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL- 521 (696)
Q Consensus 453 ~~~~~p-----~~~~~~~li~~--~~--~~g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 521 (696)
. .| +-.+...+..+ .. ..+++++|..+|+++..+ |+..+-..|+.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 45 23444444444 22 334899999999886554 55333344555788889999999999988776
Q ss_pred ---------CCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 522 ---------EPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 522 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+|.++.++..++.+....|+ +|.+++.++++..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 48888888888878888887 8889999887733
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.90 E-value=6.1e-08 Score=91.78 Aligned_cols=181 Identities=9% Similarity=-0.008 Sum_probs=112.6
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN----VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSF----TF 427 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 427 (696)
...+..+...+.+.|++++|...|+.+.. |+ ...+..+..+|.+.|++++|+..|++.++. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34445566667777888888877776652 22 235666777777778888888888777763 34322 23
Q ss_pred HHHHHHHhc------------------CCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCC
Q 005454 428 VSVLSACLH------------------ADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 428 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
..+..++.. .|+.++|...|+.+.+. .|+. ..+..... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 333333332 34455555555555432 1221 11111000 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 489 KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA---GPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456678899999999999999999999886 56899999999999999999999999876653
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.88 E-value=3.3e-08 Score=96.08 Aligned_cols=204 Identities=7% Similarity=-0.037 Sum_probs=145.4
Q ss_pred CccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHHHHHHhhHHhcCChHHHHHHHhcCCC--C-C---chHHH
Q 005454 322 DKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPT--R-N---VVSWN 393 (696)
Q Consensus 322 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~ 393 (696)
+...+......+...|+++.|...+..+++..+... ...+..+..+|.+.|++++|...|+.... | + ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 345566677788899999999999999998765421 66788899999999999999999998762 2 1 34677
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHH
Q 005454 394 SMINGYAQ--------NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYAC 465 (696)
Q Consensus 394 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 465 (696)
.+..++.. .|++++|+..|++.++. .|+..... .+...+..+... ....+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~-------------~a~~~~~~~~~~-----~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD-------------DATQKIRELRAK-----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH-------------HHHHHHHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH-------------HHHHHHHHHHHH-----HHHHHHH
Confidence 78888888 99999999999999984 45532111 111111111110 0123556
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCCch--
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMK----------GDIKHGEMAARHLFELEPINAGP-- 528 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~-- 528 (696)
+...|.+.|++++|...|+++.. .|+ ...+..+..++... |++++|...++++++..|+++.+
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 77888889999999888876422 233 34677777777755 88999999999999999998643
Q ss_pred -HHHHHHHHhhcCChhHH
Q 005454 529 -YIMLSNMYAACGRWEDV 545 (696)
Q Consensus 529 -~~~l~~~~~~~g~~~~A 545 (696)
+..+..++...|+++++
T Consensus 234 a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 234 AEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 55566666655555443
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.88 E-value=2.3e-08 Score=85.41 Aligned_cols=129 Identities=17% Similarity=0.290 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|+.+|+++.+.+ +.+..++..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D--------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C---------------
Confidence 45666666667777777777777766532 223445555555555666666666666555432 1
Q ss_pred hccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 471 GRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+.+...|..+...+...|++++|...++++++..|.++..+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344555666666677777777777777777777777777777777777777777777777
Q ss_pred Hhhh
Q 005454 551 SMKS 554 (696)
Q Consensus 551 ~m~~ 554 (696)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=4.4e-08 Score=83.61 Aligned_cols=121 Identities=18% Similarity=0.253 Sum_probs=88.4
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLH 436 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 436 (696)
.+..+...|...|++++|..+|+.+. +.+...|..+...+...|++++|...|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56778899999999999999999765 3467788999999999999999999999998853 3456677778888888
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 437 ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
.|++++|..+++.+.+. .+.+...+..++..+.+.|++++|.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 88888888888887753 1222333333444444444444443333
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=2.4e-09 Score=94.27 Aligned_cols=140 Identities=10% Similarity=0.002 Sum_probs=94.4
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV 476 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 476 (696)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|++.|++..+. -+-+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 33445566666666666544 2333 234455566666667777777776666642 122356666777777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 477 DKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMA-ARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 477 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
++|...|++. ...| +..+|..+...+...|+.++|.+. ++++++++|.++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777653 2244 466888888889999988766554 689999999999999999999888875
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.84 E-value=3.5e-08 Score=96.70 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=98.0
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCC-------C----CchHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPT-------R----NVVSWNSMINGYAQNGQDLEALALYDKLLQE------NL 420 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 420 (696)
..++..+...|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34455566666666666666666654431 1 2346677777788888888888888877663 11
Q ss_pred CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhh------CCCCC-hHHHHHHHHHHhc------cCCHHHHHHHHHhC
Q 005454 421 KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVH------GITPS-LDHYACMINLLGR------SSDVDKAVDLIKSL 486 (696)
Q Consensus 421 ~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~------~g~~~~A~~~~~~~ 486 (696)
.|+ ..++..+...+...|++++|..+++.+.+.. ...+. ...+..+...+.. ...+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3567777778888888888888888776531 11222 2233333333333 23345555555555
Q ss_pred CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 487 PHK-PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 487 ~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
... |+ ..++..+...+...|++++|...++++++..
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 432 33 3478889999999999999999999988753
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=9.6e-09 Score=114.49 Aligned_cols=169 Identities=8% Similarity=-0.055 Sum_probs=130.0
Q ss_pred HhcCChHHHHHHHhcCC-----------CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 369 CKCGVTDDAWTVFNMMP-----------TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
...|++++|.+.|+... ..+...|..+...|.+.|++++|++.|++.++.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 66788888888887654 3456678888888888899999998888888742 23456777778888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAA 515 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 515 (696)
|++++|+..|+++.+. -+.+...|..+..+|.+.|++++ .+.|++.. ..| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999888888763 12346777888888888888888 88887643 234 5668888888888999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 516 RHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 516 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
+++++++|.+..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999888888888888877665
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=2.3e-07 Score=86.76 Aligned_cols=162 Identities=9% Similarity=0.001 Sum_probs=128.4
Q ss_pred CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC----cHHHHHHHHHHhHHhhCCCCChHH
Q 005454 387 RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHAD----LFERGQNHFDSISAVHGITPSLDH 462 (696)
Q Consensus 387 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 462 (696)
.++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|..+|+...+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456677777777777888888888888888765 45666667667776 6 788999988888652 35667
Q ss_pred HHHHHHHHhc----cCCHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 463 YACMINLLGR----SSDVDKAVDLIKSLPHK-PN---SLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 463 ~~~li~~~~~----~g~~~~A~~~~~~~~~~-p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+..|..+|.. .+++++|.+++++.... |. ...+..|...|.. .++.++|...++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 88999999999875543 42 6788888888888 78999999999999998 66788999
Q ss_pred HHHHHHhhc-C-----ChhHHHHHHHHhhhCCC
Q 005454 531 MLSNMYAAC-G-----RWEDVASIRSSMKSKNV 557 (696)
Q Consensus 531 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 557 (696)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999864 3 89999999999887664
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.81 E-value=4.9e-08 Score=96.33 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=131.6
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC
Q 005454 377 AWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHG 455 (696)
Q Consensus 377 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 455 (696)
....+......+...+..+...+...|++++|+..|++..+. .|+ ...+..+...+...|++++|...++++...
T Consensus 105 l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-- 180 (287)
T 3qou_A 105 IRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-- 180 (287)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--
Confidence 333444433444556667777888889999999999988884 454 567777888888999999999999887643
Q ss_pred CCCChHHHHHH-HHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CchHH
Q 005454 456 ITPSLDHYACM-INLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN--AGPYI 530 (696)
Q Consensus 456 ~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~ 530 (696)
.|+....... ...+.+.|+.++|.+.+++.. ..| +...+..+...+...|++++|...++++++.+|.+ ..++.
T Consensus 181 -~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~ 259 (287)
T 3qou_A 181 -DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX 259 (287)
T ss_dssp -GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred -hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence 4554433222 233667777888888877642 234 56789999999999999999999999999999988 78899
Q ss_pred HHHHHHhhcCChhHHHHHHHHhh
Q 005454 531 MLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.|+.+|...|+.++|...+++..
T Consensus 260 ~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 260 TFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999998887653
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=1.1e-06 Score=93.32 Aligned_cols=125 Identities=16% Similarity=0.066 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC-LHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
..|...+..+.+.++.+.|..+|++. +.. .++...|......- ...++.+.|..+|+...+.++ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 35666666666777788888888888 321 12333343222111 122358888888888877532 22345566677
Q ss_pred HHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 469 LLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
...+.|+.+.|..+|+++. .....|...+.--..+|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777888888888888873 2456677777666667777777776666553
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.79 E-value=1.2e-08 Score=89.68 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=100.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKG 506 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g 506 (696)
|...+...|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|.+.|++.. ..| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455677889999999887753 3444 4456678999999999999999998753 345 5679999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHH-HHHhhh
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI-RSSMKS 554 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 554 (696)
++++|...++++++++|.++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987776 466654
No 101
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=3.5e-07 Score=88.92 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=125.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-----CCchHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-----RNVVSWNSMINGYAQNGQDLEALALYDKLL 416 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 416 (696)
+...++..+..+ .++......+...|...|++++|++++..... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555444 33444455777888888888888888887632 244567777888899999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHh--c--CCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC
Q 005454 417 QENLKP-----DSFTFVSVLSACL--H--ADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP 487 (696)
Q Consensus 417 ~~g~~p-----~~~t~~~ll~a~~--~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 487 (696)
+ ..| +..+...+..++. . .+++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7 467 3566666666632 2 34889999999998653 3543333344447888999999999887543
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchH
Q 005454 488 H-----------KP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 488 ~-----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
. .| |..+...++......|+ .|.++++++.+..|+++...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 2 14 34456566655666676 88999999999999987653
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=8.5e-08 Score=104.85 Aligned_cols=159 Identities=10% Similarity=0.031 Sum_probs=124.6
Q ss_pred cCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHH
Q 005454 371 CGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNH 446 (696)
Q Consensus 371 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 446 (696)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 35678999999999999999999999999984 454 67888889999999999999999
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 005454 447 FDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMK---GDIKHGEMAARHLFEL 521 (696)
Q Consensus 447 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 521 (696)
+++..+. -+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999874 23457889999999999999999999998743 234 567889999999999 9999999999999999
Q ss_pred CCCCCchHHHHH
Q 005454 522 EPINAGPYIMLS 533 (696)
Q Consensus 522 ~p~~~~~~~~l~ 533 (696)
+|.+...|..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999988776
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.70 E-value=1.2e-07 Score=80.40 Aligned_cols=94 Identities=12% Similarity=0.090 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+......|.+.|++++|++.|++.. ..| +..+|..+..++...|++++|...++++++++|.++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 445556666666677777766666532 233 455677777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777777776654
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=4.7e-07 Score=100.80 Aligned_cols=190 Identities=11% Similarity=-0.024 Sum_probs=145.5
Q ss_pred HhhcCchhHHHHHHHHH--------HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHc
Q 005454 334 AKLASLYHGQVVHGKAV--------VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQN 402 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 402 (696)
...|++++|.+.+..+. +.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67788888888888887 332 3466778888889999999999999998776 35677899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHH
Q 005454 403 GQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVD 481 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 481 (696)
|++++|++.|++.++. .|+ ...+..+..++...|++++ ++.|+++.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999884 554 5778888889999999999 9999998863 23346788999999999999999999
Q ss_pred HHHhCC-CCCCH-HHHHHHHHHHHhcCC-----hHHHHHHHHHHHhcCCCCCchH
Q 005454 482 LIKSLP-HKPNS-LIWSTLLSVCAMKGD-----IKHGEMAARHLFELEPINAGPY 529 (696)
Q Consensus 482 ~~~~~~-~~p~~-~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 529 (696)
.+++.. ..|+. ..|..+..++...++ .+...++.+.+.++.+.++..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 999865 46764 477777777766554 3445555555555655555543
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=1.4e-07 Score=85.36 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=59.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 479 AVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN--AGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 479 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
|.+.+++. ...| +...+..+...+...|++++|...++++++.+|.. +.++..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44444442 2234 46788888889999999999999999999999865 5589999999999999999999887664
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=2.3e-07 Score=101.45 Aligned_cols=147 Identities=12% Similarity=-0.041 Sum_probs=94.0
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALY 412 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 412 (696)
.|++++|...++++.+.... +...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36677788888777765433 56777778888888888888888887654 235567777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc---CCHHHHHHHHHhC
Q 005454 413 DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS---SDVDKAVDLIKSL 486 (696)
Q Consensus 413 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 486 (696)
++..+.. +.+...+..+..++...|++++|.+.|++..+. -+.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8887742 233567777777888888888888888887753 123456777777888777 8888888877664
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.68 E-value=5e-08 Score=85.38 Aligned_cols=95 Identities=9% Similarity=-0.030 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4566777888888999999998887743 234 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998866
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.67 E-value=9.3e-08 Score=83.63 Aligned_cols=101 Identities=10% Similarity=-0.013 Sum_probs=87.1
Q ss_pred CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 455 GITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 455 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
.+.|+ ...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 4567777888888899999988887753 244 67799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhhC
Q 005454 532 LSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998763
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.66 E-value=2.2e-06 Score=84.13 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=75.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHH--HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC-----
Q 005454 403 GQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFE--RGQNHFDSISAVHGITPSLDHYACMINLLGRSSD----- 475 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----- 475 (696)
+++++++++++++.+.. +-|..+|..-...+.+.|.++ +++++++.+.+. -.-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555532 223344444444444444444 555555555542 12233444444444444444
Q ss_pred -HHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC---CCCCchHHHHHHHHhhcCChhHHHHH
Q 005454 476 -VDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDI-KHGEMAARHLFELE---PINAGPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 476 -~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
+++++++++++. .. -|...|+.+...+.+.|+. +.....++++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 555555554422 12 2455666665555555542 33444555555554 55556666666666666666666666
Q ss_pred HHHhhh
Q 005454 549 RSSMKS 554 (696)
Q Consensus 549 ~~~m~~ 554 (696)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.4e-07 Score=86.48 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=93.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQENLKP-DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR 472 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 472 (696)
.+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+++.+. -+.+...+..+...|..
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3788888999999999999998884 45 4577888888888999999999999988763 23346778888888766
Q ss_pred cCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 005454 473 SSD--VDKAVDLIKSLPHKPNS--LIWSTLLSVCAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 473 ~g~--~~~A~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
.|. .+++...++... .|+. ..|..+..++...|++++|...+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 345566666654 3333 34455566677789999999999999999996
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=5.9e-06 Score=81.09 Aligned_cols=226 Identities=9% Similarity=0.032 Sum_probs=159.2
Q ss_pred hhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc--CchhHHHHHHHHHHhCCCCchHHHHHHHhhH----Hhc---CC
Q 005454 304 EEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA--SLYHGQVVHGKAVVLGVDDDLLVSSALIDMY----CKC---GV 373 (696)
Q Consensus 304 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~---g~ 373 (696)
.++|++++..++. +.|+..| ++.--..+...+ +++++...+..++...+. +..+++.-...+ .+. ++
T Consensus 49 s~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3466666666664 3444333 333334444455 666666666666665544 344444333333 333 67
Q ss_pred hHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc------HHH
Q 005454 374 TDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDL--EALALYDKLLQENLKPDSFTFVSVLSACLHADL------FER 442 (696)
Q Consensus 374 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 442 (696)
++++..+++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|..-.....+.+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 888888888776 467778888888888888888 9999999999864 4456677666666666665 899
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDK-AVDLIKSLPH-----KPNSLIWSTLLSVCAMKGDIKHGEMAAR 516 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 516 (696)
++++++.+... -+-|...|+.+..++.+.|+..+ +.++.+++.. ..+...+..++..+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999988863 34567888888888988888555 5556666432 3477899999999999999999999999
Q ss_pred HHHh-cCCCCCchHHHHHHH
Q 005454 517 HLFE-LEPINAGPYIMLSNM 535 (696)
Q Consensus 517 ~~~~-~~p~~~~~~~~l~~~ 535 (696)
.+.+ .+|.....|...+..
T Consensus 283 ~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHHT
T ss_pred HHHhccChHHHHHHHHHHhh
Confidence 9997 899888777766544
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.63 E-value=2e-07 Score=78.90 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=83.9
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHH
Q 005454 420 LKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWS 496 (696)
Q Consensus 420 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 496 (696)
+.|+. ..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++.. ..| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 34555666666777777777777766652 23345666777777777777777777776532 233 566899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
.+..++...|++++|...++++++++|+++.++..|.+++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887654
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=7.3e-07 Score=88.84 Aligned_cols=221 Identities=12% Similarity=0.010 Sum_probs=153.6
Q ss_pred hcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHH
Q 005454 300 QNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWT 379 (696)
Q Consensus 300 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 379 (696)
..|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998876531 111 1 01135666666665543 456778888888888
Q ss_pred HHhcCCC-----CC----chHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhcCCcHHHHHH
Q 005454 380 VFNMMPT-----RN----VVSWNSMINGYAQNGQDLEALALYDKLLQEN---LKPD--SFTFVSVLSACLHADLFERGQN 445 (696)
Q Consensus 380 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~ 445 (696)
.|.+... .+ ..+|+.+...|...|++++|+..|++.++.- -.|. ..++..+...+.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7775542 12 3478888899999999999999999876521 1222 3567778888888 99999999
Q ss_pred HHHHhHHhhCCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhCCC----CCC----HHHHHHHHHHHHhcCChHHHHH
Q 005454 446 HFDSISAVHGITPS----LDHYACMINLLGRSSDVDKAVDLIKSLPH----KPN----SLIWSTLLSVCAMKGDIKHGEM 513 (696)
Q Consensus 446 ~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~ 513 (696)
.|++....+.-..+ ...+..+...|.+.|++++|++.+++... .++ ...+..+...+...|+++.|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988764211111 46788899999999999999999976422 122 2266667777788899999999
Q ss_pred HHHHHHhcCCCCCch-----HHHHHHHHhhcCChhHHHHH
Q 005454 514 AARHLFELEPINAGP-----YIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 514 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 548 (696)
.+++.+ ++|..... ...++.+| ..|+.+.+.++
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999999 99876543 33455555 56777666553
No 114
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=1.9e-06 Score=85.14 Aligned_cols=161 Identities=8% Similarity=-0.017 Sum_probs=120.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hHHHH
Q 005454 394 SMINGYAQNGQDLEALALYDKLLQEN-LKPDSF----TFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LDHYA 464 (696)
Q Consensus 394 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 464 (696)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+..|+.+.....-.++ ...++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999987742 122321 2334556677788999999999988763222233 23688
Q ss_pred HHHHHHhccCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchH
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLP-------H-KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPY 529 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 529 (696)
.+...|...|++++|.+.++++. . .+. ..++..+...|...|++++|...+++++++.+.. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999988887643 2 122 2378899999999999999999999999876433 4579
Q ss_pred HHHHHHHhhcCC-hhHHHHHHHHhhh
Q 005454 530 IMLSNMYAACGR-WEDVASIRSSMKS 554 (696)
Q Consensus 530 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 554 (696)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999887753
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.60 E-value=6.2e-07 Score=83.77 Aligned_cols=123 Identities=8% Similarity=-0.014 Sum_probs=91.6
Q ss_pred HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 005454 429 SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKG 506 (696)
Q Consensus 429 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g 506 (696)
.+...+...|++++|...|+.. +.|+...+..+...|.+.|++++|.+.+++.. . +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444455566666666666544 23455666666666666677777766665532 1 235668888888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 507 DIKHGEMAARHLFELEPINA----------------GPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
++++|...+++++++.|.+. .++..++.+|...|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999888877 889999999999999999999999987744
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=5.1e-05 Score=80.50 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=127.0
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHH-HHHHHhc
Q 005454 208 DKARWLFDRMNN---RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDA-GRLFHVI 283 (696)
Q Consensus 208 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A-~~~~~~~ 283 (696)
+.+..+|+++.. .+...|-..+.-+.+.|++++|..+|++.... |....+.. .|+.....++. ..+.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHHHHHHHHHH
Confidence 345667777654 34567888888888999999999999999887 55443322 23322111111 1122211
Q ss_pred c------------CCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHh-hcCchhHHHHHHHHH
Q 005454 284 K------------EKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAK-LASLYHGQVVHGKAV 350 (696)
Q Consensus 284 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~ 350 (696)
. ......|...+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|+.+++.++
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 011245777777777788899999999988 32 11222222221111112 236888999999888
Q ss_pred HhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005454 351 VLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQ 417 (696)
Q Consensus 351 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 417 (696)
+.... ++..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+..+++++.+
T Consensus 348 ~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 86532 45556667888888899999999998884 3566777777776777888888887777664
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=5e-07 Score=78.33 Aligned_cols=95 Identities=9% Similarity=-0.057 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|...++++++++|.++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3455666777888888888888887643 234 67789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998866
No 118
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.56 E-value=1.5e-06 Score=85.64 Aligned_cols=153 Identities=9% Similarity=-0.012 Sum_probs=72.1
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CCchHHH-HHHHHHHHcCCh
Q 005454 329 VVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RNVVSWN-SMINGYAQNGQD 405 (696)
Q Consensus 329 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g~~ 405 (696)
+...+...|+++.|...++.+.+..+. +...+..+...|.+.|++++|...|+.+.. |+..... .....+...++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 333344444444444444444444332 344555555666666666666666665542 3222111 112224445555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 406 LEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 406 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
++|+..|++..... +.+...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+.++|...+
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 55555555555532 223345555555555556666666555555543111111334444444444444444444444
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.3e-06 Score=86.37 Aligned_cols=163 Identities=9% Similarity=-0.024 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhC--CCCC--hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDS-----FTFVSVLSACLHADLFERGQNHFDSISAVHG--ITPS--LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 461 (696)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...++....... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4555677788889999999999888774322111 1233445566778899999999988764211 1111 45
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--C----C
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP----HKPN-----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--N----A 526 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~----~ 526 (696)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999998887642 1222 258889999999999999999999999887532 1 4
Q ss_pred chHHHHHHHHhhcCChhHH-HHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDV-ASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 553 (696)
.+|..++.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5688999999999999999 77677654
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.54 E-value=1.5e-06 Score=82.10 Aligned_cols=183 Identities=10% Similarity=-0.101 Sum_probs=131.3
Q ss_pred cchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCc--hHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC-ch---HHHHH
Q 005454 324 FSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDD--LLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN-VV---SWNSM 395 (696)
Q Consensus 324 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-~~---~~~~l 395 (696)
..+......+...|+++.|...+..+++..+... ...+..+..+|.+.|++++|...|+...+ |+ .. ++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455566778899999999999999998765422 45777889999999999999999998752 32 22 45555
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 396 INGYAQ------------------NGQDLEALALYDKLLQENLKPDSFT-FVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 396 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
..++.. .|+.++|+..|+++++ ..|+... ...... ...+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHH------
Confidence 666654 5789999999999998 4566532 211110 00111111
Q ss_pred CCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 457 TPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
......+...|.+.|++++|...|+++.. .|+ ...+..+..++...|+.++|...++++....|.+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223567888999999999999887532 343 246888899999999999999999999998887654
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=2.2e-06 Score=80.06 Aligned_cols=173 Identities=9% Similarity=-0.075 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC-CCchHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 005454 341 HGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT-RNVVSWNSMINGYAQNG----QDLEALALYDKL 415 (696)
Q Consensus 341 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~l~~~m 415 (696)
+|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .++.++..|...|.. + +.++|+++|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 3455556665553 566777777788888888888888876653 456677777777776 6 788899999888
Q ss_pred HHCCCCCCHHHHHHHHHHHhc----CCcHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhc----cCCHHHHHHHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLH----ADLFERGQNHFDSISAVHGITPS---LDHYACMINLLGR----SSDVDKAVDLIK 484 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~ 484 (696)
.+.| +...+..|...+.. .+++++|..+|++..+ ..|. ...+..|..+|.. .+++++|.++|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7755 55666777777776 7889999999988764 2342 6777788888877 788999999998
Q ss_pred hCCCC-CCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 005454 485 SLPHK-PNSLIWSTLLSVCAMK-G-----DIKHGEMAARHLFELEP 523 (696)
Q Consensus 485 ~~~~~-p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 523 (696)
+.... ++...+..|...|... | |.++|...++++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 75333 4556777777777643 3 89999999999988764
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=1.6e-07 Score=92.14 Aligned_cols=191 Identities=10% Similarity=-0.021 Sum_probs=123.7
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLS 432 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 432 (696)
+...+..+...|.+.|++++|...|+... ..+...|..+..+|...|++++|+..+++.++. .|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34455666677777777777777777654 335667777888888888888888888888774 443 566777777
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSL-DHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHG 511 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 511 (696)
++...|++++|...|+...+.. |+. ..+...+....+.++...... .......++..+...+ ..+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 8888888888888887776531 211 111111222221111111111 2222333344443333 222 36899999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHhhc-CChhHHHHHHHHhhhC
Q 005454 512 EMAARHLFELEPINAGPYIMLSNMYAAC-GRWEDVASIRSSMKSK 555 (696)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 555 (696)
.+.++++++++|.+......+...+.+. +++++|.++|.+..+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999998887777888778777 7899999999988653
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.52 E-value=3.2e-06 Score=78.82 Aligned_cols=145 Identities=9% Similarity=-0.040 Sum_probs=99.7
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcH
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLF 440 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 440 (696)
+..+...+...|++++|...|++..+++...|..+...|...|++++|++.|++.++.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556677788888888888888877777788888888888888888888888877743 33456677777777777888
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005454 441 ERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLF 519 (696)
Q Consensus 441 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 519 (696)
++|...|+.+.+...-.+... +...| +...|+ ..+|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888877777765211111000 00000 012232 3577788888888999999999999999
Q ss_pred hcCCCC
Q 005454 520 ELEPIN 525 (696)
Q Consensus 520 ~~~p~~ 525 (696)
++.|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 988876
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.52 E-value=2.5e-06 Score=76.99 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=96.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC---CChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHH--H
Q 005454 259 TVSNILGACFQTGRIDDAGRLFHVIKE---KDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSS--C 333 (696)
Q Consensus 259 t~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~ 333 (696)
.+......+...|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+.. +..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 344555667888888888888888763 46677888889999999999999999988764 33332 2222211 1
Q ss_pred HhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCC--CC---chHHHHHHHHHHHcCChHHH
Q 005454 334 AKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPT--RN---VVSWNSMINGYAQNGQDLEA 408 (696)
Q Consensus 334 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A 408 (696)
...+....+...++.+++..+. +...+..+...|...|++++|...|+++.+ |+ ...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 1222333456666666665443 455566666666666666666666665442 21 33566666666666666666
Q ss_pred HHHHHHHH
Q 005454 409 LALYDKLL 416 (696)
Q Consensus 409 ~~l~~~m~ 416 (696)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 125
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.51 E-value=1.3e-06 Score=81.32 Aligned_cols=135 Identities=17% Similarity=0.097 Sum_probs=85.3
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLH 436 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 436 (696)
.+.+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3446777778888888888877654 345667788888888888888888888888773 454 4566666666654
Q ss_pred CCc--HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 005454 437 ADL--FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLS 500 (696)
Q Consensus 437 ~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~ 500 (696)
.|. ...+...+.... ...|....+..+...+...|++++|...|++ +...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 443 334444444432 2223223344455566677888888888876 445677665555543
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=9.5e-07 Score=78.54 Aligned_cols=125 Identities=6% Similarity=-0.019 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~ 504 (696)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++.. .. .+...|..+..++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444445555555555555555442 12234555556666666666666666665432 12 356678888888999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHH--HHhhcCChhHHHHHHHHhh
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSN--MYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~ 553 (696)
.|++++|...++++++++|.++..+..+.. .+...|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999998888754444 4888899999999988764
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.48 E-value=1.1e-06 Score=73.62 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~ 503 (696)
++..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++.. +.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555555432 122344555555566666666666665554321 235667788888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
..|++++|...++++++..|.++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999999999988888888888876654
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.48 E-value=7.6e-07 Score=75.23 Aligned_cols=95 Identities=13% Similarity=0.054 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456667777788888888888887642 233 56788999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|...+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999988866
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-06 Score=74.61 Aligned_cols=114 Identities=6% Similarity=-0.037 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++.. . +.+...|..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3333444444444444444444444321 11233444445555555555555555554421 1 234567788888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCC
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGR 541 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 541 (696)
..|++++|...++++++++|.+...+..++.++...|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 89999999999999999999988889899888887664
No 130
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=1e-06 Score=87.73 Aligned_cols=197 Identities=9% Similarity=-0.056 Sum_probs=150.1
Q ss_pred hhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHH
Q 005454 335 KLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDK 414 (696)
Q Consensus 335 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 414 (696)
..|++++|..+++++.+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356778888888888764321 1 11115788888888765 46778899999999999998
Q ss_pred HHHCCC---CCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC--C--ChHHHHHHHHHHhccCCHHHHHHHHHh
Q 005454 415 LLQENL---KPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGIT--P--SLDHYACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 415 m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
..+... .+. ..+|..+...+...|++++|+..|++..+.+.-. | ....+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 766311 111 3478888889999999999999999886542111 1 14678889999988 999999999876
Q ss_pred CCC----CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHHhhcCChhHHHHHHHH
Q 005454 486 LPH----KPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG------PYIMLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 486 ~~~----~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 551 (696)
... ..+ ..++..+...+...|++++|...+++++++.|.+.. .+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 421 111 357888999999999999999999999998765542 677788889999999999999998
Q ss_pred hh
Q 005454 552 MK 553 (696)
Q Consensus 552 m~ 553 (696)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.1e-06 Score=79.27 Aligned_cols=120 Identities=8% Similarity=0.062 Sum_probs=85.6
Q ss_pred hcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCC-C-CCHHHHHHHHHH-HHhcCCh--H
Q 005454 435 LHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPH-K-PNSLIWSTLLSV-CAMKGDI--K 509 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-p~~~~~~~ll~~-~~~~g~~--~ 509 (696)
...|++++|...++...+. -+.+...+..+...|...|++++|...+++... . .+...|..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3456666666666666542 123456666677777777777777777765422 2 355677777777 6788888 9
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 510 HGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 510 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+|...++++++.+|.++.++..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999988899999999999999999999998887644
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.46 E-value=1.2e-06 Score=74.11 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+.+... .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 4444445555556666666666555542 12234555566666666666666666665432 123 4667888888899
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChh
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWE 543 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 543 (696)
..|++++|...++++++.+|.++..+..++.++...|+++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888753
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=4.9e-07 Score=86.70 Aligned_cols=137 Identities=9% Similarity=-0.083 Sum_probs=99.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS--LDHYACMINLL 470 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 470 (696)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 44566777888888888888887763 465545555555677888899998888755431 1121 23667778888
Q ss_pred hccCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 471 GRSSDVDKAVDLIKSLPHK---PN--SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~---p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
.+.|++++|+..|++.... |. ...+..+..++...|+.++|...|+++++.+|. +.++..|.+
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 8999999999998876322 43 336777788889999999999999999999997 666655543
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.39 E-value=1.8e-06 Score=87.17 Aligned_cols=144 Identities=14% Similarity=0.023 Sum_probs=103.7
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMI 467 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 467 (696)
+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+.+.+.- +.....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~---------~~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ---------ALRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH---------HHHHHHHHHHH
Confidence 3446677777777777777777777777663 3332100 001111000 00135677778
Q ss_pred HHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDV 545 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 545 (696)
.+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|.++.++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887642 233 5678999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHhh
Q 005454 546 -ASIRSSMK 553 (696)
Q Consensus 546 -~~~~~~m~ 553 (696)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 44666664
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=4e-06 Score=80.40 Aligned_cols=181 Identities=7% Similarity=-0.034 Sum_probs=136.3
Q ss_pred hcCChHHHHHHHhcCC---CCCchHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCH---------------
Q 005454 370 KCGVTDDAWTVFNMMP---TRNVVSWNSM-------INGYAQNGQDLEALALYDKLLQENLKPDS--------------- 424 (696)
Q Consensus 370 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 424 (696)
..++...|.+.|.++. +.....|+.+ ...+...++..+++..+++-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4678888888888766 2345578877 4666666666677766666555 33332
Q ss_pred -------HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCH----H
Q 005454 425 -------FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNS----L 493 (696)
Q Consensus 425 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 493 (696)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455667889999999999988864 2354436666777899999999999999876554533 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELE--PI-NAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
++..+..++...|++++|+..++++..-. |. .+.....++.++.+.|+.++|..+|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78888999999999999999999998543 43 4457889999999999999999999999773
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=1.7e-06 Score=91.70 Aligned_cols=117 Identities=7% Similarity=-0.017 Sum_probs=88.2
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKH 510 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 510 (696)
.+...|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 345667777777777777653 1223667777777788888888887777663 2234 56688999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHH--HhhcCChhHHHHHHHH
Q 005454 511 GEMAARHLFELEPINAGPYIMLSNM--YAACGRWEDVASIRSS 551 (696)
Q Consensus 511 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 551 (696)
|...++++++++|.++.++..++.+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8899999999999874
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.35 E-value=6.2e-06 Score=76.02 Aligned_cols=61 Identities=7% Similarity=-0.014 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CC----chHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NA----GPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++..+...+...|++++|...+++++++.+. ++ ..+..++.+|...|++++|.+.+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556666667777777777777776654321 11 2356778888888888888887776644
No 138
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=4.2e-05 Score=75.31 Aligned_cols=158 Identities=9% Similarity=-0.030 Sum_probs=118.4
Q ss_pred HHhhHHhcCChHHHHHHHhcCCCC---Cc-----h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMPTR---NV-----V-SWNSMINGYAQNGQDLEALALYDKLLQENLK-PD----SFTFVS 429 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~~~---~~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 429 (696)
.+..+...|++++|...++..... +. . .+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466788899999999999875431 11 1 2334666677788999999999999884322 22 236888
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhh----CCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-------CCCC-HHHHH
Q 005454 430 VLSACLHADLFERGQNHFDSISAVH----GITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-------HKPN-SLIWS 496 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~ 496 (696)
+...+...|++++|..+|+.+.+.. +..+. ..+|..+...|.+.|++++|.+.+++.. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999999999987522 11122 3478889999999999999999887532 1223 56888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHhc
Q 005454 497 TLLSVCAMKGD-IKHGEMAARHLFEL 521 (696)
Q Consensus 497 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 521 (696)
.+..++...|+ +++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999994 69999999998764
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.32 E-value=2.4e-06 Score=69.86 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-H-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI--NAGPYIMLSNM 535 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 535 (696)
...+..+...+.+.|++++|...+++.. . +.+..+|..+...+...|++++|...++++++..|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3455566677777777777777776532 1 235667888888889999999999999999999998 88899999999
Q ss_pred Hhhc-CChhHHHHHHHHhhhCCC
Q 005454 536 YAAC-GRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 536 ~~~~-g~~~~A~~~~~~m~~~~~ 557 (696)
|... |++++|.+.+++..+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999988876543
No 140
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=1.4e-06 Score=72.95 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=80.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAAC 539 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 539 (696)
.+..+...+.+.|++++|...+++.. ..| +...|..+..++...|++++|+..++++++++|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888899999988887753 244 6778999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhhCC
Q 005454 540 GRWEDVASIRSSMKSKN 556 (696)
Q Consensus 540 g~~~~A~~~~~~m~~~~ 556 (696)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887643
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.30 E-value=3.8e-06 Score=71.92 Aligned_cols=98 Identities=11% Similarity=0.041 Sum_probs=81.4
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+...+..+...+...|++++|...|++.. ..| +...|..+...+...|+++.|...++++++++|.++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 345667777777788888888887776632 233 567888899999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhhC
Q 005454 536 YAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~~ 555 (696)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.29 E-value=3.9e-06 Score=75.68 Aligned_cols=129 Identities=10% Similarity=0.080 Sum_probs=94.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhccCCH--
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL-LGRSSDV-- 476 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 476 (696)
...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877743 3355677777788888888888888888877632 2345677777777 7788887
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 477 DKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 477 ~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
++|...+++.. ..| +...|..+...+...|+++.|...++++++++|.++.....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 88888887643 234 46688889999999999999999999999999988765443
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.29 E-value=1.8e-06 Score=75.40 Aligned_cols=105 Identities=9% Similarity=-0.038 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVC 502 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~ 502 (696)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|.+.+++.. ..| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 44555666667777777777777776652 22345666777777777777777777776642 233 456788888899
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
...|++++|...++++++++|.++.....
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 99999999999999999999988766443
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=2.8e-06 Score=75.61 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|.++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445555556666666666666665432 123 45566667777777777777777777777777777777777777777
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 77777777777766654
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=5.1e-06 Score=72.49 Aligned_cols=105 Identities=8% Similarity=-0.090 Sum_probs=83.6
Q ss_pred CCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHH
Q 005454 420 LKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWS 496 (696)
Q Consensus 420 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~ 496 (696)
+.|+. ..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|.+.|++.. ..| +...|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34543 46667777888899999999999988763 23356788888899999999999999887742 234 456888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 005454 497 TLLSVCAMKGDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 497 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 526 (696)
.+..++...|++++|...+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998653
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=5e-06 Score=76.61 Aligned_cols=169 Identities=10% Similarity=-0.012 Sum_probs=101.9
Q ss_pred hHHhcCChHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHH
Q 005454 367 MYCKCGVTDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERG 443 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 443 (696)
.....|+++.|.+.|+.... .....|..+...+...|++++|+..|++.++. .|+...+... ....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~~~~- 81 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------ILLD- 81 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------HHHH-
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------hHHH-
Confidence 34444555555555543322 13446677777788888888888888888773 3322111000 0000
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005454 444 QNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFEL 521 (696)
Q Consensus 444 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 521 (696)
-.. ......+..+..+|.+.|++++|...+++.. .. .+...|..+..++...|+++.|...+++++++
T Consensus 82 ------~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 82 ------KKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp ------HHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ------HHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 000 0013556667777888888888888776642 23 35678889999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCChhHHH-HHHHHhhhCC
Q 005454 522 EPINAGPYIMLSNMYAACGRWEDVA-SIRSSMKSKN 556 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 556 (696)
+|.++.++..++.++...|+.+++. ..++.|-..+
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999888877 5555554433
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.24 E-value=3.6e-06 Score=71.18 Aligned_cols=94 Identities=11% Similarity=-0.045 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc-------hHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG-------PYIM 531 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 531 (696)
..+..+...+.+.|++++|++.|++.. ..| +..+|..+..+|...|++++|...++++++++|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 455667888888888888888887642 244 5678999999999999999999999999999987764 5777
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++.+|...|++++|++.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988754
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=6.7e-06 Score=67.86 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+..++..+...|++++|.+.+++.. ..| +...|..+...+...|++++|...++++++.+|.++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 344555556666666666666665532 122 455666666777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 7777777777776654
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.24 E-value=6.9e-06 Score=72.83 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..+|..+..++...|+++.|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 357888899999999999999999999999999999999999999999999999999998866
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=9.8e-06 Score=66.82 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+..... .+.+...+..+...+.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3344444445555555555555555432 12234455555555666666666666555431 123 4567778888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
..|++++|...++++++.+|.++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 889999999999999999888887777766553
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=6.4e-05 Score=74.55 Aligned_cols=209 Identities=10% Similarity=0.013 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHhhHHhcC-ChHHHHHHHhcCC---CCCchHHHHHHHHHHHc-C-ChHHHHHHHHHH
Q 005454 342 GQVVHGKAVVLGVDDDLLVSSALIDMYCKCG-VTDDAWTVFNMMP---TRNVVSWNSMINGYAQN-G-QDLEALALYDKL 415 (696)
Q Consensus 342 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m 415 (696)
|..+...++...+. +..+++.--..+...| .+++++..++.+. .++..+|+.-...+... + ++++++++++++
T Consensus 73 AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~ 151 (349)
T 3q7a_A 73 ALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGS 151 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33334444333322 2333333333333344 3555555555443 23444555554444444 4 556666666666
Q ss_pred HHCCCCCCHHHHHHHHHHHhcCCcHH--------HHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCC-------HHHHH
Q 005454 416 LQENLKPDSFTFVSVLSACLHADLFE--------RGQNHFDSISAVHGITPSLDHYACMINLLGRSSD-------VDKAV 480 (696)
Q Consensus 416 ~~~g~~p~~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~ 480 (696)
++.. +-|..+|..-...+.+.|.++ +++++++++.+. -.-|...|+....++.+.++ +++++
T Consensus 152 L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 152 LLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp TSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 5532 223344443333333333333 666666666552 23345556666666655554 56666
Q ss_pred HHHHhCC-CC-CCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC------CCCCchHHHH
Q 005454 481 DLIKSLP-HK-PNSLIWSTLLSVCAMKGDI--------------------KHGEMAARHLFELE------PINAGPYIML 532 (696)
Q Consensus 481 ~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l 532 (696)
+++++.. .. -|...|+.+-..+.+.|+. .........+.... +.++.+...|
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 308 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYL 308 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHH
Confidence 6665432 23 3566776666665555543 12222222222222 4566678899
Q ss_pred HHHHhhcCChhHHHHHHHHhhh
Q 005454 533 SNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 533 ~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+++|...|+.++|.++++.+.+
T Consensus 309 ~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 309 ADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHh
Confidence 9999999999999999998864
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=5.9e-06 Score=70.01 Aligned_cols=97 Identities=10% Similarity=0.035 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 458 PSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++.+|.++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34577888999999999999999999874 3344 677899999999999999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHhhh
Q 005454 536 YAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m~~ 554 (696)
|...|++++|.+.+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999999998866
No 153
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.22 E-value=6e-06 Score=68.93 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56788889999999999999999987532 3467789999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHhhhC
Q 005454 538 ACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~~ 555 (696)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988763
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.21 E-value=0.0003 Score=69.79 Aligned_cols=231 Identities=12% Similarity=0.071 Sum_probs=156.8
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccc-hHHHHHHHHhhc-CchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhc-C-C
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFS-ISSVVSSCAKLA-SLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKC-G-V 373 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~ 373 (696)
....+..++|++++.+++. +.|+..| ++.--..+...+ .++++...+..++...++ +..+++.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3444555678888888776 3444433 444444445556 477888888888776654 666676666666665 6 7
Q ss_pred hHHHHHHHhcCCC---CCchHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc---
Q 005454 374 TDDAWTVFNMMPT---RNVVSWNSMINGYAQNGQDL--------EALALYDKLLQENLKPDSFTFVSVLSACLHADL--- 439 (696)
Q Consensus 374 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--- 439 (696)
.++++..++.+.. +|..+|+--.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 8888888888774 46667777666666666666 8999999999864 4466777777777777765
Q ss_pred ----HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCH--------------------HHHHHHHHhCCC-------
Q 005454 440 ----FERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDV--------------------DKAVDLIKSLPH------- 488 (696)
Q Consensus 440 ----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~------- 488 (696)
+++++++++.+... -+-|...|+.+-.++.+.|+. .+..++...+..
T Consensus 220 ~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 68889988888763 344567777777777766653 334444444322
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-hcCCCCCchHHHHHH
Q 005454 489 -KPNSLIWSTLLSVCAMKGDIKHGEMAARHLF-ELEPINAGPYIMLSN 534 (696)
Q Consensus 489 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~ 534 (696)
.+....+..|+..|...|+.++|.++++.+. +.+|.....+...+.
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2567789999999999999999999999997 678876665554443
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=1.8e-05 Score=78.00 Aligned_cols=162 Identities=9% Similarity=-0.052 Sum_probs=113.0
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhcCC---CCCc------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNMMP---TRNV------VSWNSMINGYAQNGQDLEALALYDKLLQENL---KPD--SF 425 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 425 (696)
.+...+..+...|++++|...++... +... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33445667778888888888776433 1111 1234455667778899999999988876321 122 34
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhccCCHHHHHHHHHhCCC-------CCC-H
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPS-----LDHYACMINLLGRSSDVDKAVDLIKSLPH-------KPN-S 492 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~p~-~ 492 (696)
++..+...+...|++++|..+|+++.+.....|+ ...+..+...|.+.|++++|.+.+++... ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888999999999999888732222222 25788888899999999999988875321 111 5
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 005454 493 LIWSTLLSVCAMKGDIKHG-EMAARHLFEL 521 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 521 (696)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 5788888899999999999 7778887654
No 156
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.2e-05 Score=69.72 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSL-PHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|++++|...++++++.+|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344555555566666666666666543 22344 3456666666666667777777777666666666666666666
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777766666554
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.19 E-value=1e-05 Score=68.12 Aligned_cols=97 Identities=7% Similarity=0.059 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY 536 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 536 (696)
+...+..+...+...|++++|.+.+++.. .. .+...|..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677788899999999999999998753 23 36778999999999999999999999999999999999999999999
Q ss_pred hhcCChhHHHHHHHHhhhC
Q 005454 537 AACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 537 ~~~g~~~~A~~~~~~m~~~ 555 (696)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999988763
No 158
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=1.9e-05 Score=69.94 Aligned_cols=127 Identities=9% Similarity=0.049 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 44455555566666666666666655532 223455555555666666666666666665542 123345566666666
Q ss_pred hccCCHHHHHHHHHhCCC-CC-CHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 005454 471 GRSSDVDKAVDLIKSLPH-KP-NSLIWS--TLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~-~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
.+.|++++|.+.+++... .| +...+. .++..+...|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 666666666666654321 22 333332 233335566777777777666544
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2e-05 Score=68.16 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
..+..+...|...|++++|.+.+++.. ..| +...|..+..++...|++++|...++++++++|.++..+..+..+..+
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 344444455555555555555554321 123 456777888888889999999999999999999888877777666543
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=2.4e-05 Score=72.00 Aligned_cols=133 Identities=11% Similarity=-0.042 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHh---hCCCC--C
Q 005454 390 VSWNSMINGYAQNGQDLEALALYDKLLQ----ENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISAV---HGITP--S 459 (696)
Q Consensus 390 ~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p--~ 459 (696)
..++.+...+...|++++|+..+++..+ .+..|. ..++..+...+...|++++|...+++..+. .+-.| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444455555555555555544433 111111 233444444555555555555555544332 11111 1
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP----HKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
...+..+...+...|++++|...+++.. ..++ ..++..+...+...|++++|...+++++++.
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 2344555555555666666555554321 0111 1234556666666677777777776666543
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.16 E-value=1.2e-05 Score=71.31 Aligned_cols=108 Identities=14% Similarity=0.034 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVC 502 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~ 502 (696)
..+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34444555555666666666666655542 12245556666666666677777666665532 233 467888999999
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 503 AMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 503 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
...|++++|...++++++++|.++..+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999987665543
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.15 E-value=9.9e-06 Score=68.20 Aligned_cols=108 Identities=4% Similarity=-0.097 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 005454 427 FVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAM 504 (696)
Q Consensus 427 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~ 504 (696)
+..+...+...|++++|+..|+...+. -+.+...|..+..+|.+.|++++|.+.+++.. ..| +...|..+..++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444555555555555554432 12234455555555555666666655555422 123 45577778888888
Q ss_pred cCChHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 005454 505 KGDIKHGEMAARHLFELE------PINAGPYIMLSNMY 536 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~ 536 (696)
.|++++|...++++++++ |.++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77766666665544
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.15 E-value=7.4e-06 Score=70.81 Aligned_cols=108 Identities=7% Similarity=-0.041 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCA 503 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~ 503 (696)
.+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...+++.. ..| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3344444555666666666666665542 12244555666666666666666666665532 123 4557778888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 005454 504 MKGDIKHGEMAARHLFELEPINAGPYIMLSNM 535 (696)
Q Consensus 504 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 535 (696)
..|++++|...+++++++.|.++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 89999999999999999998887765554333
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=7.9e-06 Score=70.63 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 493 LIWSTLLSVCAMKGDIKHGEMAARHLFEL-------EPINAGPY----IMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 493 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
..|..+..++...|++++|...+++++++ +|+++.+| ...+.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38889999999999999999999999999 99999999 9999999999999999999998865
No 165
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.10 E-value=0.0003 Score=69.44 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=122.1
Q ss_pred HhcCChh-HHHHHHHHhccCCCCCCccc-hHHHHHHHHhhcC----------chhHHHHHHHHHHhCCCCchHHHHHHHh
Q 005454 299 TQNGKEE-DALILFNEMLSEDVRPDKFS-ISSVVSSCAKLAS----------LYHGQVVHGKAVVLGVDDDLLVSSALID 366 (696)
Q Consensus 299 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~ 366 (696)
.+.|.++ +|++++..++. +.|+..| |+.--..+...+. ++.+..++..++...+. +..+|+.-.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3445554 67888888775 4455443 2221111111111 45666666666665543 5556665555
Q ss_pred hHHhcC--ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC---
Q 005454 367 MYCKCG--VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQ-DLEALALYDKLLQENLKPDSFTFVSVLSACLHA--- 437 (696)
Q Consensus 367 ~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--- 437 (696)
.+.+.| .++++..+++.+. .+|..+|+.-.-.+...|. ++++++.++++++.. +-|...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 555556 3667777776665 3466677766666666666 477777777777743 33344444443333322
Q ss_pred -----------CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc-----------CCHHHHHHHHHhCC-CCCCHHH
Q 005454 438 -----------DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS-----------SDVDKAVDLIKSLP-HKPNSLI 494 (696)
Q Consensus 438 -----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~-~~p~~~~ 494 (696)
+.++++++++...... -+-|...|+.+-.++.+. +.++++++.++++. ..||. .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred cccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 3466666666666542 233445555454444443 34556666655532 24443 3
Q ss_pred HHHHHHHH-----HhcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 495 WSTLLSVC-----AMKGDIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 495 ~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
|..+..+. ...|..++....+.+++++||...+.|.-+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222211 12455566666666667777665555554433
No 166
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=2.2e-05 Score=82.73 Aligned_cols=144 Identities=11% Similarity=0.078 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
...|..+...|.+.|++++|+..|++.++. .|+...+ . .+... .... -....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666777777777777777777777662 2322100 0 00000 0000 11456777888
Q ss_pred HHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHH
Q 005454 469 LLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVA 546 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 546 (696)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|.+..++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887642 233 56789999999999999999999999999999999999999999999999999887
Q ss_pred H-HHHHhhh
Q 005454 547 S-IRSSMKS 554 (696)
Q Consensus 547 ~-~~~~m~~ 554 (696)
+ .+++|..
T Consensus 406 ~~~~~~~f~ 414 (457)
T 1kt0_A 406 RRIYANMFK 414 (457)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHh
Confidence 5 4566643
No 167
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.09 E-value=2.5e-06 Score=70.96 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHhCCCC----CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 473 SSDVDKAVDLIKSLPHK----PN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~~~----p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
.|++++|+..|++.... |+ ..+|..+..++...|++++|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666666553221 32 34677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhhh
Q 005454 548 IRSSMKS 554 (696)
Q Consensus 548 ~~~~m~~ 554 (696)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877755
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.09 E-value=3.8e-06 Score=77.42 Aligned_cols=94 Identities=13% Similarity=0.011 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCC----CCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLP----HKPN--------------SLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
..+..+...+.+.|++++|.+.|++.. ..|+ ..+|..+..++...|++++|...++++++++
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 445566677777777777777776532 1221 2688889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 523 PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 523 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|.++.++..++.+|...|++++|.+.+++..+
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998865
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00031 Score=69.29 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=152.5
Q ss_pred hhcCc-hhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCC----------hHHHHHHHhcCC---CCCchHHHHHHHHHH
Q 005454 335 KLASL-YHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGV----------TDDAWTVFNMMP---TRNVVSWNSMINGYA 400 (696)
Q Consensus 335 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 400 (696)
..|.+ ++|......++...+. +..+++.--..+...|. ++++...++.+. +++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 34444 4788888888887654 44555544333333332 567777777665 467789998888888
Q ss_pred HcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc-HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc----
Q 005454 401 QNGQ--DLEALALYDKLLQENLKPDSFTFVSVLSACLHADL-FERGQNHFDSISAVHGITPSLDHYACMINLLGRS---- 473 (696)
Q Consensus 401 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 473 (696)
..|+ +++++++++++.+.. +-|...|+.-...+...|. +++++++++.+.+. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999954 4456777776666777787 68999999999874 244566777666665554
Q ss_pred ----------CCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCchHH
Q 005454 474 ----------SDVDKAVDLIKSLP-HK-PNSLIWSTLLSVCAMK-----------GDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 474 ----------g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
+.++++++++++.. .. -|..+|+-+-..+... +.++++.+.++++++++|++...+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 45788998887743 33 4777888776666554 4578999999999999999855544
Q ss_pred HHHHH---HhhcCChhHHHHHHHHhhh
Q 005454 531 MLSNM---YAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 531 ~l~~~---~~~~g~~~~A~~~~~~m~~ 554 (696)
.++.. ....|..+++...+.++.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 44332 2246777888888888876
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.05 E-value=2.6e-05 Score=65.64 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------CchHHH
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN-------AGPYIM 531 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 531 (696)
..+..+...+...|++++|...+++... +.+...|..+...+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4556667777778888888877766421 2356788888888999999999999999999988766 778999
Q ss_pred HHHHHhhcCChhHHHHHHHHhhh
Q 005454 532 LSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 532 l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++.+|...|++++|.+.+++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.05 E-value=1.9e-05 Score=67.40 Aligned_cols=99 Identities=4% Similarity=-0.120 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSV 501 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~ 501 (696)
...+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++.. ..| +...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 344445555555555555555555555442 12234455555566666666666666555432 123 45677778888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC
Q 005454 502 CAMKGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~ 524 (696)
+...|+++.|...++++++++|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 88888888888888888888776
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=1.6e-05 Score=67.03 Aligned_cols=89 Identities=17% Similarity=0.100 Sum_probs=64.1
Q ss_pred HHHHHhccCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLPH-KPNS----LIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN---AGPYIMLSNMYA 537 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~ 537 (696)
+...+.+.|++++|.+.|++... .|+. ..+..+..++...|++++|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44555666677777666655321 2322 366677777788888888888888888888887 566888888888
Q ss_pred hcCChhHHHHHHHHhhh
Q 005454 538 ACGRWEDVASIRSSMKS 554 (696)
Q Consensus 538 ~~g~~~~A~~~~~~m~~ 554 (696)
..|++++|...+++..+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.99 E-value=3.4e-05 Score=77.62 Aligned_cols=115 Identities=13% Similarity=0.058 Sum_probs=75.7
Q ss_pred hcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC--CCC----------------chHHHHHHH
Q 005454 336 LASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP--TRN----------------VVSWNSMIN 397 (696)
Q Consensus 336 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~----------------~~~~~~li~ 397 (696)
.++++.|...+....+..+ .+...+..+...|.+.|++++|...|++.. .|+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444333221 146678889999999999999999998765 232 356777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
+|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++.+
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776632 22345666666666666666666666666654
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.99 E-value=3.8e-05 Score=62.52 Aligned_cols=99 Identities=11% Similarity=0.022 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 005454 426 TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP---NSLIWSTLLSV 501 (696)
Q Consensus 426 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~~~ll~~ 501 (696)
.+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444444455555555555555555442 12234455555666666666666666665431 223 45677777777
Q ss_pred HHhc-CChHHHHHHHHHHHhcCCCCC
Q 005454 502 CAMK-GDIKHGEMAARHLFELEPINA 526 (696)
Q Consensus 502 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 526 (696)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7788 888888888888888877654
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.98 E-value=6.6e-05 Score=78.51 Aligned_cols=163 Identities=9% Similarity=-0.090 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHhcCCcHHHHHHHHHHhHHhh---CCCC-ChH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQEN-LKPDSF----TFVSVLSACLHADLFERGQNHFDSISAVH---GITP-SLD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~ 461 (696)
++..++..|...|++++|.+.+.++...- ..++.. +...+-..+...|..+++..++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667788888888888888887765421 112221 22223334456788888888887765421 2222 245
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---C----C
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-------HKPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPI---N----A 526 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~----~ 526 (696)
.+..++..|...|++++|..++++.. .+|. ..++..++..|...|++++|...+++++...+. + .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788899999999999988886531 1232 347888888999999999999999988776422 2 1
Q ss_pred chHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 527 GPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 527 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
..+..++..+...|++++|.+.+....
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 346778888889999999988876664
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.96 E-value=4.2e-05 Score=80.95 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=64.5
Q ss_pred HHhhHHhcCChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCc
Q 005454 364 LIDMYCKCGVTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADL 439 (696)
Q Consensus 364 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 439 (696)
+...|.+.|++++|...|++.. ..+..+|..+..+|.+.|++++|++.+++.++. .|+ ..++..+..++...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 3445566677777776666543 234556666666666677777777777666663 333 4556666666666666
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHH--HhccCCHHHHHHHHH
Q 005454 440 FERGQNHFDSISAVHGITPSLDHYACMINL--LGRSSDVDKAVDLIK 484 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 484 (696)
+++|.+.|+++.+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666665431 1122233333333 555566666666555
No 177
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.95 E-value=3.2e-05 Score=75.59 Aligned_cols=106 Identities=4% Similarity=-0.119 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 005454 423 DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLS 500 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~ 500 (696)
+...+..+...+...|++++|+..|+...+. .+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456666777777888888888888877753 2235667777778888888888888877763 3344 4557777777
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 501 VCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 501 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 788888888888888888887776654433
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.91 E-value=3.2e-05 Score=65.04 Aligned_cols=114 Identities=7% Similarity=-0.011 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLL 470 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 470 (696)
.|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++.+.... |+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~----------- 70 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE----------- 70 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc-----------
Confidence 45555555666666666666666655532 2233444445555555555555555555544321 00
Q ss_pred hccCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 471 GRSSDVDKAVDLIKSLPHKPN----SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 471 ~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
..++ ..+|..+..++...|+++.|...++++++..| ++.....+..++.
T Consensus 71 -----------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 -----------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp -----------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred -----------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 44666777777778888888888888888777 4555555554443
No 179
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=5.1e-05 Score=79.82 Aligned_cols=124 Identities=8% Similarity=-0.008 Sum_probs=92.4
Q ss_pred HhcCCcHHHHHHHHHHhHHhhC--CCC---C-hHHHHHHHHHHhccCCHHHHHHHHHhC--------C-CCCCHH-HHHH
Q 005454 434 CLHADLFERGQNHFDSISAVHG--ITP---S-LDHYACMINLLGRSSDVDKAVDLIKSL--------P-HKPNSL-IWST 497 (696)
Q Consensus 434 ~~~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~ 497 (696)
+...|++++|+.++++..+... +.| + ..+++.|..+|...|++++|..++++. + ..|+.. +++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4466777777777776654321 112 2 356778888888888888888777653 1 235544 7889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 498 LLSVCAMKGDIKHGEMAARHLFE-----LEPINAGP---YIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 498 ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
|...|...|++++|+.+++++++ ++|+.|.+ ...|..++...|++++|..++.++++...
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999877 45776654 56788889999999999999999987543
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=6.6e-05 Score=65.76 Aligned_cols=61 Identities=11% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------CCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPI------NAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
++..+...+...|++++|...+++++++.+. ....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5556666667777777777777777665321 134577888888888888888888877643
No 181
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.89 E-value=0.00013 Score=61.34 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPD-SFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
++..+...+.+.|++++|++.|++.++. .|+ ..+|..+..++...|++++|++.++...+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555666666667777777777666663 333 45555666666666666666666666554
No 182
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.00045 Score=74.46 Aligned_cols=169 Identities=8% Similarity=0.022 Sum_probs=132.6
Q ss_pred ChHHHHHHHhcCC---CCCchHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC-
Q 005454 373 VTDDAWTVFNMMP---TRNVVSWNSMINGYAQNGQ----------DLEALALYDKLLQENLKPDSFTFVSVLSACLHAD- 438 (696)
Q Consensus 373 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 438 (696)
..++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3355678777777777776 899999999998853 334567777777777888
Q ss_pred -cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccC-CHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhc---------
Q 005454 439 -LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSS-DVDKAVDLIKSLPH-KP-NSLIWSTLLSVCAMK--------- 505 (696)
Q Consensus 439 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~--------- 505 (696)
+++++++.++++.+. -+-+...|+.-..++.+.| .++++.++++++.. .| |..+|+.....+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999874 2445677888888888888 89999999988644 34 677998888777663
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 506 -----GDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 506 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
+.++++.+.++++++++|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998655
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.86 E-value=2.3e-05 Score=78.99 Aligned_cols=147 Identities=10% Similarity=-0.009 Sum_probs=79.8
Q ss_pred chHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 389 VVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 389 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
...|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566677777788888888888888777 3455432 223344444332221 136777888
Q ss_pred HHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-hhcCChhHH
Q 005454 469 LLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMY-AACGRWEDV 545 (696)
Q Consensus 469 ~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 545 (696)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|...++++++++|.++.++..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999988887642 234 5678888899999999999999999999999999988888888884 445677777
Q ss_pred HHHHHHhhhC
Q 005454 546 ASIRSSMKSK 555 (696)
Q Consensus 546 ~~~~~~m~~~ 555 (696)
.+.+++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888777553
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.85 E-value=5.4e-05 Score=63.16 Aligned_cols=95 Identities=7% Similarity=0.023 Sum_probs=54.2
Q ss_pred HHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 005454 430 VLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 430 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~ 507 (696)
+...+...|++++|+..|+.+.+. -+.+...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555542 12234555555566666666666666665432 233 45577777788888888
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 005454 508 IKHGEMAARHLFELEPINA 526 (696)
Q Consensus 508 ~~~a~~~~~~~~~~~p~~~ 526 (696)
+++|...++++++++|.++
T Consensus 101 ~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhCcCCC
Confidence 8888888888888887653
No 185
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00013 Score=61.19 Aligned_cols=102 Identities=9% Similarity=-0.021 Sum_probs=58.4
Q ss_pred HHhcCCcHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcC
Q 005454 433 ACLHADLFERGQNHFDSISAVHGITPS-LDHYACMINLLGRSSDVDKAVDLIKSLP-HKPN----SLIWSTLLSVCAMKG 506 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~ll~~~~~~g 506 (696)
.+...|++++|...|+.+.+...-.|. ...+..+...+.+.|++++|.+.+++.. ..|+ ..++..+..++...|
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 344455555555555554432110010 0344455555566666666665555431 1222 446677777888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 005454 507 DIKHGEMAARHLFELEPINAGPYIMLSN 534 (696)
Q Consensus 507 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 534 (696)
++++|...++++++..|+++........
T Consensus 91 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 91 KNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 8888888888888888877655444433
No 186
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=6.4e-05 Score=60.17 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 490 PNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
.+...|..+...+...|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999999999999999999999999998765
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00034 Score=73.05 Aligned_cols=159 Identities=11% Similarity=-0.016 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHhCCC-Cc----hHHHHHHHhhHHhcCChHHHHHHHhcCCC-----C----CchHH
Q 005454 327 SSVVSSCAKLASLYHGQVVHGKAVVLGVD-DD----LLVSSALIDMYCKCGVTDDAWTVFNMMPT-----R----NVVSW 392 (696)
Q Consensus 327 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~----~~~~~ 392 (696)
..+...|...|++++|...+..+.+.... ++ ..+.+.+...+...|+.+.|..+++.... . -..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 34445555555555555555554432111 11 12233344445566777777777765431 1 12367
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC-----hHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQE--NL--KPD-SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS-----LDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~ 462 (696)
..+...|...|++++|..++++.... +. +|. ..++..++..|...|++++|..++++......-.++ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 78888999999999999999887652 11 222 346777888899999999999999887653211121 356
Q ss_pred HHHHHHHHhccCCHHHHHHHHHh
Q 005454 463 YACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~ 485 (696)
+..++..+...|++++|...|..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 77788888999999999877654
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=8.4e-05 Score=75.72 Aligned_cols=136 Identities=15% Similarity=0.020 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITP-SLDHYACMINL 469 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~ 469 (696)
.|..+...+.+.|++++|++.|++.++. .|+.. ..... +... ...| +...|..+..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~---~~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGA---KLQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHH---HHHHHHHHHHHHHHHH
Confidence 4666677777777777777777776651 11100 00000 0100 1122 35678888899
Q ss_pred HhccCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHH
Q 005454 470 LGRSSDVDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVAS 547 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 547 (696)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|.+..++..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999874 3345 567899999999999999999999999999999999999999999999998887765
Q ss_pred H
Q 005454 548 I 548 (696)
Q Consensus 548 ~ 548 (696)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 4
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.82 E-value=7e-06 Score=67.13 Aligned_cols=93 Identities=13% Similarity=0.016 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------CchHH
Q 005454 459 SLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN------AGPYI 530 (696)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 530 (696)
+...+..+...+.+.|++++|.+.+++.. ..| +..+|..+..++...|++++|...++++++++|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44566777788888888888888887642 233 56788899999999999999999999999999998 67788
Q ss_pred HHHHHHhhcCChhHHHHHHHH
Q 005454 531 MLSNMYAACGRWEDVASIRSS 551 (696)
Q Consensus 531 ~l~~~~~~~g~~~~A~~~~~~ 551 (696)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
No 190
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.81 E-value=3.1e-05 Score=66.88 Aligned_cols=116 Identities=11% Similarity=-0.054 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCC-CChHHHHHHHHH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGIT-PSLDHYACMINL 469 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~ 469 (696)
.+......+.+.|++++|+..|++.++ +.|+...- ++ .... .+...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a----------~~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EA----------FDHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SC----------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hh----------hhhccchHHHHHHHHHH
Confidence 445556666677777777777777766 34431000 00 0000 011245555555
Q ss_pred HhccCCHHHHHHHHHh--------CCCCCCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 470 LGRSSDVDKAVDLIKS--------LPHKPNSL-IW----STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~~--------~~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
+.+.|++++|+..+++ ....|+.. .| .....++...|++++|...|+++++++|.+...+..+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 5555555555554433 23367644 88 8999999999999999999999999999988765544
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.81 E-value=0.00011 Score=64.32 Aligned_cols=132 Identities=13% Similarity=0.066 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC----hH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENL-KPD----SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPS----LD 461 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 461 (696)
++..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 345555556666666666666665544210 011 124555556666677777777777665542111111 34
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 005454 462 HYACMINLLGRSSDVDKAVDLIKSLP-------HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE 522 (696)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~~~~~~~-------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 522 (696)
.+..+...+...|++++|.+.+++.. ..+ ...++..+...+...|++++|...+++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 56666777777777777777765431 111 13366777788888899999999988887754
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.80 E-value=9.4e-05 Score=75.33 Aligned_cols=64 Identities=6% Similarity=0.002 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+..+|..+..++.+.|++++|...++++++++|.++.+|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999999999999999999999999999999998876
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.78 E-value=6e-05 Score=75.90 Aligned_cols=152 Identities=9% Similarity=0.010 Sum_probs=80.1
Q ss_pred hHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcC
Q 005454 358 LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHA 437 (696)
Q Consensus 358 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 437 (696)
...+..+...|.+.|++++|...|+.....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788899999999999999987653221111 1222333344433221 13677778888899
Q ss_pred CcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCCCH-HHHHHHHHH-HHhcCChHHHHHH
Q 005454 438 DLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKPNS-LIWSTLLSV-CAMKGDIKHGEMA 514 (696)
Q Consensus 438 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~-~~~~~ll~~-~~~~g~~~~a~~~ 514 (696)
|++++|+..++...+. -+.+...|..+..+|...|++++|...|++.. ..|+. .++..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988763 23356788889999999999999999998864 34543 355555544 2345677888899
Q ss_pred HHHHHhcCCCCC
Q 005454 515 ARHLFELEPINA 526 (696)
Q Consensus 515 ~~~~~~~~p~~~ 526 (696)
++++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999988765
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.78 E-value=4.6e-05 Score=67.37 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC-chHHHHHHHH
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINA-GPYIMLSNMY 536 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~ 536 (696)
...|..+..+|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++++|.++ .....+..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567778888888888888888887642 234 566899999999999999999999999999999887 4455554443
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.00017 Score=75.92 Aligned_cols=95 Identities=6% Similarity=-0.094 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHhCCC-CCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 005454 461 DHYACMINLLGRSSDVDKAVDLIKSLPH-KPN----------------SLIWSTLLSVCAMKGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 523 (696)
..+..+...|.+.|++++|...|++... .|+ ..+|..+..++.+.|++++|...++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3455555666666666666666654321 122 46889999999999999999999999999999
Q ss_pred CCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 524 INAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 524 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
.++.+|..++.+|...|++++|...+++..+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998764
No 196
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.71 E-value=3.8e-05 Score=63.60 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHH
Q 005454 437 ADLFERGQNHFDSISAVHG--ITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGE 512 (696)
Q Consensus 437 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~ 512 (696)
.|++++|+..|++..+. + -+.+...+..+..+|.+.|++++|.+.+++.. ..| +..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555556666555431 1 01223455666666666777777766666532 123 4567778888888889999999
Q ss_pred HHHHHHHhcCCCCCchHH
Q 005454 513 MAARHLFELEPINAGPYI 530 (696)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~ 530 (696)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888766543
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.64 E-value=0.00014 Score=56.66 Aligned_cols=81 Identities=22% Similarity=0.264 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYA 537 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 537 (696)
...+..+...+.+.|++++|...+++.. ..| +..+|..+...+...|++++|...++++++++|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666777777777777777776532 223 56678888888999999999999999999999999888888888887
Q ss_pred hcC
Q 005454 538 ACG 540 (696)
Q Consensus 538 ~~g 540 (696)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.61 E-value=0.00053 Score=53.66 Aligned_cols=69 Identities=10% Similarity=0.070 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 489 KPNSLIWSTLLSVCAMKGD---IKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
++|...+..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|+..|+++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567788888888865555 79999999999999999999999999999999999999999999988654
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.61 E-value=0.0001 Score=60.68 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 478 KAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 478 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|.+.+++. ...| +...|..+...+...|++++|...++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455442 2233 5678888999999999999999999999999999999999999999999999999999988865
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.58 E-value=0.00019 Score=75.56 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=87.9
Q ss_pred HHHhccCCHHHHHHHHHhCC---------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---hH
Q 005454 468 NLLGRSSDVDKAVDLIKSLP---------HKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---PY 529 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~~~---------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~ 529 (696)
..+...|++++|+.++++.. ..|+. .+++.|..+|...|++++|+.+++++++. +|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34567899999998886531 12443 38899999999999999999999999874 466554 58
Q ss_pred HHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHH
Q 005454 530 IMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQE 601 (696)
Q Consensus 530 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~ 601 (696)
..|+.+|..+|++++|..++++..+--.+ .-+..||...++...+.+...+++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV------------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH------------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988652110 0125799998888777766655543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.47 E-value=0.00029 Score=72.98 Aligned_cols=116 Identities=9% Similarity=0.036 Sum_probs=86.1
Q ss_pred HHHHhccCCHHHHHHHHHhCC------C---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---h
Q 005454 467 INLLGRSSDVDKAVDLIKSLP------H---KPN-SLIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---P 528 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~------~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~ 528 (696)
+.-+.+.|++++|++++++.. . .|+ ..+++.|..+|...|++++|+.+++++++. +|.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888877776531 1 122 237888999999999999999999998874 455554 5
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHH
Q 005454 529 YIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQ 600 (696)
Q Consensus 529 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~ 600 (696)
+..|+.+|..+|++++|..++++..+--.. .-+..||...+++..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999988652110 012579999999888888887775
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.46 E-value=5.4e-05 Score=65.26 Aligned_cols=84 Identities=7% Similarity=0.040 Sum_probs=61.3
Q ss_pred cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcC
Q 005454 473 SSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGD----------IKHGEMAARHLFELEPINAGPYIMLSNMYAACG 540 (696)
Q Consensus 473 ~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 540 (696)
.+.+++|.+.+++.. ..| +...|..+..++...++ +++|+..++++++++|++..+|..++++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344555555554421 223 44455555555555444 569999999999999999999999999999875
Q ss_pred -----------ChhHHHHHHHHhhhCC
Q 005454 541 -----------RWEDVASIRSSMKSKN 556 (696)
Q Consensus 541 -----------~~~~A~~~~~~m~~~~ 556 (696)
++++|.+.|++..+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 8999999999987743
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00036 Score=56.59 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+...|..+...+...|++++|...++++++++|.++.++..++.+|...|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999987643
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.40 E-value=0.0016 Score=55.41 Aligned_cols=88 Identities=8% Similarity=-0.064 Sum_probs=47.8
Q ss_pred HHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh----
Q 005454 467 INLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA---- 538 (696)
Q Consensus 467 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---- 538 (696)
..+|...+.+++|.++|++.-...+...+..|...|.. .+|.++|...++++.+. .++.++..|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333444444444433222344445555555544 55666666666666655 345566666666666
Q ss_pred cCChhHHHHHHHHhhhCC
Q 005454 539 CGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~~~ 556 (696)
.+++++|.+.+++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 666677777666666554
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.22 E-value=0.00081 Score=52.06 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 492 SLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 492 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
...|..+...+...|++++|...++++++.+|.++.++..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888889999999999999999999999999999999999999999999999999998876
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.18 E-value=0.0022 Score=54.65 Aligned_cols=113 Identities=10% Similarity=-0.090 Sum_probs=93.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhc----cCCHH
Q 005454 402 NGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGR----SSDVD 477 (696)
Q Consensus 402 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 477 (696)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+. -+...+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999987 44444 666777778889999999998763 466777888888877 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 005454 478 KAVDLIKSLPHKPNSLIWSTLLSVCAM----KGDIKHGEMAARHLFELEP 523 (696)
Q Consensus 478 ~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p 523 (696)
+|.++|++.-...+...+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999886656678888889888888 8999999999999998764
No 207
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.12 E-value=0.001 Score=68.77 Aligned_cols=82 Identities=6% Similarity=0.045 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCc---hHHHHHH
Q 005454 473 SSDVDKAVDLIKSL---------PHKPNS-LIWSTLLSVCAMKGDIKHGEMAARHLFEL-----EPINAG---PYIMLSN 534 (696)
Q Consensus 473 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~p~~~~---~~~~l~~ 534 (696)
.|++++|+.++++. +..|+. .+++.|..+|...|++++|+.+++++++. +|++|. .|..|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666542 112433 37888899999999999999999988773 455554 5889999
Q ss_pred HHhhcCChhHHHHHHHHhhh
Q 005454 535 MYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 535 ~~~~~g~~~~A~~~~~~m~~ 554 (696)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998865
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.11 E-value=0.00026 Score=60.96 Aligned_cols=102 Identities=8% Similarity=-0.064 Sum_probs=56.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHH
Q 005454 400 AQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKA 479 (696)
Q Consensus 400 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 479 (696)
.+.+++++|++.+++.++.. +-+...|..+..++...++++.+.... +.+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eA 65 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHH
Confidence 34555666666666666632 223455555555555554432111100 012345
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCCCch
Q 005454 480 VDLIKSL-PHKP-NSLIWSTLLSVCAMK-----------GDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 480 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+..|++. ...| +..+|..+..+|... |++++|...|+++++++|++...
T Consensus 66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 5444442 2233 233555555555554 58999999999999999987543
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.08 E-value=0.00074 Score=55.32 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=49.3
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 443 GQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLP-HKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 443 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
++..|+...+ .-+.+...+..+...|.+.|++++|...+++.. ..| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444443 112234555566666666666666666665432 123 455777777778888888888888888887
Q ss_pred cCCCC
Q 005454 521 LEPIN 525 (696)
Q Consensus 521 ~~p~~ 525 (696)
+.|.+
T Consensus 82 ~~~~~ 86 (115)
T 2kat_A 82 AAQSR 86 (115)
T ss_dssp HHHHH
T ss_pred hcccc
Confidence 77643
No 210
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.07 E-value=0.0058 Score=65.77 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCc----------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 005454 403 GQDLEALALYDKLLQENLKPDS-FTFVSVLSACLHADL----------FERGQNHFDSISAVHGITPSLDHYACMINLLG 471 (696)
Q Consensus 403 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 471 (696)
...++|++.+++++. +.|+. ..|+.--.++.+.|. ++++++.++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 445688999999999 56665 445544445555555 89999999999874 3445678888888888
Q ss_pred ccC--CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhc-------
Q 005454 472 RSS--DVDKAVDLIKSLPH--KPNSLIWSTLLSVCAMKG-DIKHGEMAARHLFELEPINAGPYIMLSNMYAAC------- 539 (696)
Q Consensus 472 ~~g--~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 539 (696)
+.| ++++|.++++++.. .-+..+|+.-..++...| ..+++.+.++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 77999999988643 347779999888888888 899999999999999999999999999998874
Q ss_pred -------CChhHHHHHHHHhhh
Q 005454 540 -------GRWEDVASIRSSMKS 554 (696)
Q Consensus 540 -------g~~~~A~~~~~~m~~ 554 (696)
++++++.+.+++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.93 E-value=0.0028 Score=53.92 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCcee
Q 005454 490 PNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELE-P-INAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 564 (696)
++..+...+..++.+.+ ++++|..+++.+++.+ | .+...+..|+-+|.+.|++++|.++++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 56666777777777766 5668888888888877 5 4566777888888888888888888887766
Q ss_pred EEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 005454 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605 (696)
Q Consensus 565 ~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~ 605 (696)
..|+..+.......+.+++++.|.+
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 2355555555556666677777764
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.85 E-value=0.0039 Score=49.48 Aligned_cols=64 Identities=11% Similarity=0.116 Sum_probs=40.3
Q ss_pred CchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH
Q 005454 388 NVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA 452 (696)
Q Consensus 388 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 452 (696)
+...|..+...|...|++++|+..|++.++.. +.+...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44566666666777777777777777766632 22244566666666677777777776666654
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.82 E-value=0.054 Score=61.41 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=101.7
Q ss_pred HHcCCCHHHHHH-HHHhcCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 005454 201 YAKGGEIDKARW-LFDRMNNRNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRL 279 (696)
Q Consensus 201 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~ 279 (696)
....+++++|.+ ++..++ +......++..+.+.|.+++|+++.+.-. .-+......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHH
Confidence 345788888887 664443 12233777778888888888887653211 113345678999999999
Q ss_pred HHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchH
Q 005454 280 FHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLL 359 (696)
Q Consensus 280 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 359 (696)
.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+-+.+...|.
T Consensus 675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 87663 567899999999999999999999998764 44555555566666665555555544432
Q ss_pred HHHHHHhhHHhcCChHHHHHHHhc
Q 005454 360 VSSALIDMYCKCGVTDDAWTVFNM 383 (696)
Q Consensus 360 ~~~~li~~y~~~g~~~~A~~~~~~ 383 (696)
++....+|.++|++++|.+++.+
T Consensus 739 -~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 -FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCHHHHHHHHHH
Confidence 23334456666777766665543
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0063 Score=62.79 Aligned_cols=94 Identities=12% Similarity=-0.022 Sum_probs=66.2
Q ss_pred cCCcHHHHHHHHHHhHHhhC--CCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 005454 436 HADLFERGQNHFDSISAVHG--ITPS----LDHYACMINLLGRSSDVDKAVDLIKSL---------PHKPNSL-IWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~~-~~~~ll 499 (696)
..|++++|..++++...... +.|+ ..+++.|..+|...|++++|+.++++. +..|+.. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677777777776654321 2222 356778888888888888888877653 2235544 788999
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCCchH
Q 005454 500 SVCAMKGDIKHGEMAARHLFE-----LEPINAGPY 529 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~ 529 (696)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999877 457666543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.76 E-value=0.0026 Score=50.19 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=25.5
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 502 CAMKGDIKHGEMAARHLFELEPINAG-PYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 502 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
+...|++++|...++++++.+|.++. .+..++.+|...|++++|.+.+++..
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555554444 44445555555555555555544443
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.69 E-value=0.036 Score=54.81 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=68.9
Q ss_pred CCCchHHHHHHHHHHH--cCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCC
Q 005454 386 TRNVVSWNSMINGYAQ--NGQ---DLEALALYDKLLQENLKPDS-FTFVSVLSACLHADLFERGQNHFDSISAVHGITPS 459 (696)
Q Consensus 386 ~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 459 (696)
..+..+|...+.+... .+. ..+|..+|++.++ +.|+. ..+..+..++.. ....+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~--------------~~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV--------------RHSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--------------HHHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--------------HhccC--CC
Confidence 4467777777766542 333 4789999999988 57774 344433333320 00001 10
Q ss_pred hHHHHHHHHHHhccCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhh
Q 005454 460 LDHYACMINLLGRSSDVDKAVDLIKSLPH-KPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAA 538 (696)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 538 (696)
.... . . .+..|.+....+.. +.+..+|.++...+...|+++.|...++++++++| +...|..++.++.-
T Consensus 253 ~~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 0000 0 0 01122221122221 23444555555445555666666666666666654 34445555666666
Q ss_pred cCChhHHHHHHHHhhh
Q 005454 539 CGRWEDVASIRSSMKS 554 (696)
Q Consensus 539 ~g~~~~A~~~~~~m~~ 554 (696)
.|++++|.+.+++...
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6666666666555543
No 217
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.11 Score=42.41 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=91.5
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
-.|..++..++..+...+ .+..-|+-++--...+-+-+-..+.++.+-+.+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 346666667776666552 23344444444333444444445555555432222 2355555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCc
Q 005454 481 DLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVK 558 (696)
Q Consensus 481 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 558 (696)
.-+-.+. .+....+.-+.....+|..+.-.+++..++.-+|.+|+....++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 5555443 233445566777888999999999999877777888999999999999999999999999999999974
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.55 E-value=0.0071 Score=47.55 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHHhccCCHHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCCh
Q 005454 466 MINLLGRSSDVDKAVDLIKSLP-HKP-NSL-IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRW 542 (696)
Q Consensus 466 li~~~~~~g~~~~A~~~~~~~~-~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 542 (696)
....+.+.|++++|.+.+++.. ..| +.. .|..+..++...|++++|...++++++++|.++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 3456677788888888877642 234 456 78888889999999999999999999999998877632 445
Q ss_pred hHHHHHHHH
Q 005454 543 EDVASIRSS 551 (696)
Q Consensus 543 ~~A~~~~~~ 551 (696)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.53 E-value=0.013 Score=60.58 Aligned_cols=95 Identities=11% Similarity=-0.013 Sum_probs=56.0
Q ss_pred cCCcHHHHHHHHHHhHHhh--CCCCC----hHHHHHHHHHHhccCCHHHHHHHHHhC--------C-CCCCHH-HHHHHH
Q 005454 436 HADLFERGQNHFDSISAVH--GITPS----LDHYACMINLLGRSSDVDKAVDLIKSL--------P-HKPNSL-IWSTLL 499 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~--------~-~~p~~~-~~~~ll 499 (696)
..|++++|+.++++..... -+.|+ ..+++.+..+|...|++++|+.++++. + ..|+.. +++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 4455555555555444311 11111 245555666666666666666665542 1 234433 678888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCCchHH
Q 005454 500 SVCAMKGDIKHGEMAARHLFE-----LEPINAGPYI 530 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 530 (696)
..|...|++++|+.+++++++ ++|++|.+-.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888888888888876 4577665543
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.22 E-value=0.039 Score=54.58 Aligned_cols=39 Identities=5% Similarity=-0.162 Sum_probs=34.4
Q ss_pred HHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 518 LFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 518 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
.+..+|.++.+|..++..+...|++++|...+++....+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 446779999999999999998999999999999998765
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.19 E-value=0.00018 Score=72.35 Aligned_cols=358 Identities=9% Similarity=0.070 Sum_probs=201.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 005454 158 THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQ 237 (696)
Q Consensus 158 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 237 (696)
.|..++.++.+.|.+++-..++....+. ..++.+=+.|+-+|++.+++.+-++++. .||+.-...+..-|...|.
T Consensus 85 ~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~l 159 (624)
T 3lvg_A 85 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKM 159 (624)
T ss_dssp SSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccC
Confidence 3444444444444444444444433333 2244555789999999999765444322 2677777788888888899
Q ss_pred chHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccC
Q 005454 238 PKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSE 317 (696)
Q Consensus 238 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 317 (696)
++.|.-+|..+... ..|...+.+.|++..|.+.-++ ..++.+|-.+-.+|...+.+.-|.-.--.++
T Consensus 160 YeAAKilys~isN~---------akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI-- 226 (624)
T 3lvg_A 160 YDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV-- 226 (624)
T ss_dssp STTSSTTGGGSCCC---------TTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH--
T ss_pred HHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc--
Confidence 88888777654322 2222234455555554322211 2477789999999999998877655444443
Q ss_pred CCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHh----cCCCC------
Q 005454 318 DVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFN----MMPTR------ 387 (696)
Q Consensus 318 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~----~~~~~------ 387 (696)
+.|| .+..++..|-..|.+++.+.+++..... -.....+++-|.-.|+|-. .++-.+-++ ++.-|
T Consensus 227 -vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKvirac 301 (624)
T 3lvg_A 227 -VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAA 301 (624)
T ss_dssp -CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHH
T ss_pred -ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHH
Confidence 2333 3445666778888888888888776632 2357888999998888753 333333333 22222
Q ss_pred -CchHHHHHHHHHHHcCChHHHHHHH-------------HHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHh
Q 005454 388 -NVVSWNSMINGYAQNGQDLEALALY-------------DKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 388 -~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
....|.-++-.|.+-.+++.|.... .+.+. -.+|...|...++-|.... +..--.++..+..
T Consensus 302 E~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~--KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p- 377 (624)
T 3lvg_A 302 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP- 377 (624)
T ss_dssp TTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGG--GCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-
T ss_pred HHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHH--HcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-
Confidence 3457888888888888888775421 11111 1234444444444443321 1111112211111
Q ss_pred hCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH------------HHHHHhc
Q 005454 454 HGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMA------------ARHLFEL 521 (696)
Q Consensus 454 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~------------~~~~~~~ 521 (696)
.+.++ ..+..+.+.|++.-...++......-+..+-.++-..+....|++.-+.. .+++-+.
T Consensus 378 -rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH 451 (624)
T 3lvg_A 378 -RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH 451 (624)
T ss_dssp -TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC
T ss_pred -cCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC
Confidence 11111 23556666666666666666665555666666666667666665432221 1111111
Q ss_pred CCCCCchHHHHHHHHhhcCChhHHHHHHH
Q 005454 522 EPINAGPYIMLSNMYAACGRWEDVASIRS 550 (696)
Q Consensus 522 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 550 (696)
+-...-..-+.+|.+.++|+++..+.+
T Consensus 452 --eL~eFRrIAA~LYkkn~rw~qsi~l~K 478 (624)
T 3lvg_A 452 --ELIEFRRIAAYLFKGNNRWKQSVELCK 478 (624)
T ss_dssp --SSHHHHHHHHHHHHTTCHHHHHSSCSS
T ss_pred --chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111223345566788888888877653
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.084 Score=59.78 Aligned_cols=45 Identities=13% Similarity=0.097 Sum_probs=24.4
Q ss_pred HhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHH
Q 005454 369 CKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKL 415 (696)
Q Consensus 369 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 415 (696)
..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44555555555554442 3345555555555555665555555554
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.84 E-value=0.03 Score=53.07 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=67.7
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhc-CChhH
Q 005454 476 VDKAVDLIKSL-PHKPN---SLIWSTLLSVCAM-----KGDIKHGEMAARHLFELEPIN-AGPYIMLSNMYAAC-GRWED 544 (696)
Q Consensus 476 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 544 (696)
..+|...+++. ...|+ ...|..|...|.. -|+.++|++.|++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555542 33565 4577888877777 499999999999999999975 99999999999995 99999
Q ss_pred HHHHHHHhhhCCCcCCC
Q 005454 545 VASIRSSMKSKNVKKFA 561 (696)
Q Consensus 545 A~~~~~~m~~~~~~~~~ 561 (696)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999886665434
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.73 E-value=0.049 Score=43.31 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHH
Q 005454 463 YACMINLLGRSSDVDKAVDLIKSLP---------HKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIML 532 (696)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~~~~~~~---------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 532 (696)
+-.|...+.+.|+++.|...++... ..+...++..|..++.+.|+++.|...++++++++|.++.+...+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3344555555555555555544321 123456888999999999999999999999999999987765554
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.60 E-value=0.11 Score=44.12 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCC---cHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 407 EALALYDKLLQENLKPDSFTFVSVLSACLHAD---LFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 407 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
.+.+.|.+..+.| .++..+...+..++.+++ ++++|+.+|+...+. . .|+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~------------------------ 68 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKE------------------------ 68 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHH------------------------
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------------
Confidence 3444455444444 245555555555555555 445666666655542 1 110
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 484 KSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 484 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
-+...+-.|.-+|.+.|++++|.+.++++++.+|++..+...
T Consensus 69 ------~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 69 ------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp ------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ------chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 022345567778899999999999999999999987665444
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.39 E-value=0.052 Score=44.30 Aligned_cols=70 Identities=19% Similarity=0.012 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHhccCCHHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCc
Q 005454 458 PSLDHYACMINLLGRSSDVDK---AVDLIKSLPHK--P--NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAG 527 (696)
Q Consensus 458 p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~--p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 527 (696)
|+..+--.+..++.+.....+ ++.+++.+-.. | .....-.|.-++.+.|+++.|.+.++.+++.+|.|..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence 444444445555555554443 44444443221 2 1112233344455555555555555555555554443
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.37 E-value=0.011 Score=59.78 Aligned_cols=113 Identities=7% Similarity=0.053 Sum_probs=61.0
Q ss_pred chHHHHHHHhhHHhcCChHHHHHHHhcCCCCCc------------hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 357 DLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNV------------VSWNSM-INGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------------~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
+..+-.++-+.|....+++.-+.-.+.-..-|. .-+..+ ...|.+++++++++++.++ .+
T Consensus 409 ~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---Dk---- 481 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DS---- 481 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TC----
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cc----
Confidence 344555666777777776655544443332222 222222 2345566777776655322 11
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHH
Q 005454 424 SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDL 482 (696)
Q Consensus 424 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 482 (696)
.|.-.+.....+|+.+-+.++++-..+. -+.+.|...+-.+...=+++-++++
T Consensus 482 --lykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 --LYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp --CTTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred --cHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 1222344456677777777777776653 2445555555555566666777666
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.07 E-value=0.11 Score=40.27 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHhccCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHH
Q 005454 457 TPSLDHYACMINLLGRSSD---VDKAVDLIKSL-PHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIM 531 (696)
Q Consensus 457 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 531 (696)
+++...+..+..++...++ .++|..++++. ...| +...+..+...+...|++++|...|+++++.+|.+ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 3456667777777654443 67888887764 2344 45677778888899999999999999999999883 33334
Q ss_pred HH
Q 005454 532 LS 533 (696)
Q Consensus 532 l~ 533 (696)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.06 E-value=0.45 Score=39.46 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC-CchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCcee
Q 005454 489 KPNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPIN-AGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYS 564 (696)
Q Consensus 489 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s 564 (696)
.|+..+--.+..++.+.. +..++..+++.++...|.+ ......|+-++.+.|++++|+++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 456655556666666554 4557888888888877743 34566778888888888888888888866
Q ss_pred EEEECCEEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCc
Q 005454 565 WIEIDNKVHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFS 605 (696)
Q Consensus 565 ~i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~ 605 (696)
..|...+....-..+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 2355555555555566777777764
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.82 Score=39.79 Aligned_cols=127 Identities=12% Similarity=0.108 Sum_probs=67.1
Q ss_pred HHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Q 005454 368 YCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHF 447 (696)
Q Consensus 368 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 447 (696)
...+|+++.|.++.+.+ .+...|..+.......|+.+-|.+.|++..+ |..+.-.|.-.|+.+.-..+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45667777777766554 3455677777777777777777777766543 223333344455554444333
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005454 448 DSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLIKSLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHL 518 (696)
Q Consensus 448 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 518 (696)
+....+ | -++.....+.-.|+++++.+++.+...-|.... ....+|--+.|.++.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 322221 1 123333445556777777777766543222111 123355555566555443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.61 E-value=3.3 Score=35.95 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=67.7
Q ss_pred HHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVH 346 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 346 (696)
...+|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+....+-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 45778888888887766 4567788888888888888888888887653 445555566667766665555
Q ss_pred HHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC
Q 005454 347 GKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 347 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
+.....|- ++.....+.-.|+++++.++|.+..
T Consensus 84 ~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 55544442 2333444555667776666665543
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.52 E-value=0.21 Score=39.51 Aligned_cols=64 Identities=13% Similarity=-0.010 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 491 NSLIWSTLLSVCAMKGDIKHGEMAARHLFELE-------PINAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 491 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
+......|...+...|+++.|...++.+++.. +..+..+..|+.+|.+.|++++|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34455678888999999999999999998863 23455799999999999999999999998866
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.07 E-value=0.38 Score=52.72 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhh
Q 005454 500 SVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMK 553 (696)
Q Consensus 500 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 553 (696)
.-|...|+++.|..+.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 346678999999999999999999999999999999999999999999999884
No 234
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.00 E-value=7 Score=37.91 Aligned_cols=137 Identities=8% Similarity=0.014 Sum_probs=80.6
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQVF----SRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.++..-|.+.+++++|++++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566667777777777765432 122344555555554443 444456677777766666666655
Q ss_pred cCChH-----HHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchH
Q 005454 169 LLDLR-----RGKQIHGKIVVGN--LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKK 240 (696)
Q Consensus 169 ~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 240 (696)
...-+ -..+...+-.+.| ..-|+.....+...|.+.+++.+|+..|---.++++..+..|+..+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 44311 1222233333434 345778888899999999999999998843222334677666666655554433
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.52 E-value=1.5 Score=35.62 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=54.3
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH---HHHHHHHhHHhhCCCC--ChHHHHHHHHHHhccCC
Q 005454 401 QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFER---GQNHFDSISAVHGITP--SLDHYACMINLLGRSSD 475 (696)
Q Consensus 401 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~ 475 (696)
.......+.+-|.+....| .|+..+-..+..++.++..... ++.+++.+.+. -.| ..+..-.|.-++.+.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 3344455566666665554 3666666667777777766555 77777777652 223 23444456667778888
Q ss_pred HHHHHHHHHhCC-CCCC
Q 005454 476 VDKAVDLIKSLP-HKPN 491 (696)
Q Consensus 476 ~~~A~~~~~~~~-~~p~ 491 (696)
+++|.++++.+. .+|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 888888877642 3453
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.06 E-value=0.64 Score=38.05 Aligned_cols=65 Identities=6% Similarity=-0.080 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCC-CCchHHHHHHHHhhcCChhHHHHHHHHhhh
Q 005454 490 PNSLIWSTLLSVCAMKG---DIKHGEMAARHLFELEPI-NAGPYIMLSNMYAACGRWEDVASIRSSMKS 554 (696)
Q Consensus 490 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 554 (696)
|+..+--.+..++.+.. +..+|..+++.+++.+|. ....+..|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444554443 344666667777666653 234456667777777777777777776654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=12 Score=38.33 Aligned_cols=164 Identities=10% Similarity=0.022 Sum_probs=94.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhccC------CC----hh
Q 005454 225 WNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDE-----VTVSNILGACFQTGRIDDAGRLFHVIKE------KD----NV 289 (696)
Q Consensus 225 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~A~~~~~~~~~------~~----~~ 289 (696)
...|...|...|++.+|.+++..+...-...+. ..+...++.|...+++..|..++.++.. ++ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888887644222222 2455566678888888888887776531 11 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhccC-CCCCCccchHHHHH---HHH-hhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 290 CWTTMIVGYTQNGKEEDALILFNEMLSE-DVRPDKFSISSVVS---SCA-KLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 290 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~---~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
.+..++..+...+++.+|-..|.+.... ....|...+..++. .|. -.+....-..+..........++...+..|
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L 299 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence 4566677777888888888888777542 11112222221111 111 111112222223333333333567788888
Q ss_pred HhhHHhc--CChHHHHHHHhcCCCCC
Q 005454 365 IDMYCKC--GVTDDAWTVFNMMPTRN 388 (696)
Q Consensus 365 i~~y~~~--g~~~~A~~~~~~~~~~~ 388 (696)
+.+|... .+++.+...|.....++
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhccc
Confidence 8888764 46778888887665443
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.97 E-value=15 Score=39.34 Aligned_cols=250 Identities=12% Similarity=0.007 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCch
Q 005454 261 SNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLY 340 (696)
Q Consensus 261 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 340 (696)
..-+..+.+.+++.....++.. ...+...-.....+....|+..+|......+-..| .........++..+...|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445556777888887776666 33444444445666777788777877777776554 334455666666666555443
Q ss_pred hH--HHHHHHHHHhC-----------CCCc-hHHHHHHHhhHHhcCChHHHHHHHhcCCCCCch---HHHHHHHHHHHcC
Q 005454 341 HG--QVVHGKAVVLG-----------VDDD-LLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVV---SWNSMINGYAQNG 403 (696)
Q Consensus 341 ~a--~~~~~~~~~~~-----------~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 403 (696)
.. .+-+..+...| +.++ ......++..+.+- ..+....... .++.. .+..-+.-+++ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 21 11122222221 1111 11111222222111 1112222111 11111 11111222333 3
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHH
Q 005454 404 QDLEALALYDKLLQEN-LKPDSF--TFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAV 480 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 480 (696)
+.+.|..+|....+.. +.+... ....+.......+...++...+...... .++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876543 222221 2222333334445345666666654331 233333333444445779999999
Q ss_pred HHHHhCCCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005454 481 DLIKSLPHKP-N-SLIWSTLLSVCAMKGDIKHGEMAARHLFE 520 (696)
Q Consensus 481 ~~~~~~~~~p-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 520 (696)
..|+.|+..+ + ..-.--+..+....|+.++|..+++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999887643 2 22222334466778899999998888875
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.98 E-value=0.41 Score=45.38 Aligned_cols=51 Identities=12% Similarity=0.048 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCCC
Q 005454 474 SDVDKAVDLIKSL-PHKPN--SLIWSTLLSVCAM-KGDIKHGEMAARHLFELEPI 524 (696)
Q Consensus 474 g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~p~ 524 (696)
|+.++|.+.|++. ...|+ ..++......++. .|+.+.+.+.+++++..+|.
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4444444444432 12332 3344444444444 35566666666666665554
No 240
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.89 E-value=24 Score=39.57 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHhcC
Q 005454 194 RNALTDMYAKGGEIDKARWLFDRMN 218 (696)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~~~ 218 (696)
|..++.++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445556666677777777777653
No 241
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.94 E-value=8.5 Score=31.53 Aligned_cols=140 Identities=11% Similarity=-0.001 Sum_probs=89.6
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHH
Q 005454 298 YTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDA 377 (696)
Q Consensus 298 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 377 (696)
+.-.|..++..++..+.... .+..-++.++--....-+-+...++++.+-+ ..| ...||++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHH
Confidence 34467777777777776642 2333444444444333333333333333221 111 2467777777
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCC
Q 005454 378 WTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGI 456 (696)
Q Consensus 378 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 456 (696)
...+-.+.. +....+.-+..+...|.-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.++-+. |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 777666544 334556667888889999999998888655 35788888888999999999999999999888764 54
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.81 E-value=20 Score=34.45 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHH----HHHhHHCCCCCCcchHHHHHHHHHc
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREALQV----FSRMQKDRFEPTDYTHVSALNACAQ 168 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 168 (696)
|.++..-|.+.+++++|++++.. -...+.+.|+...|-++ .+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 45566666777777777765432 12234445555555443 3444455677776666666666544
Q ss_pred cCC-----hHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHcCCCHHHHHHHHHhcCCCChhHHHHHHHHHHhC---CCc
Q 005454 169 LLD-----LRRGKQIHGKIVVGN--LGGNVFVRNALTDMYAKGGEIDKARWLFDRMNNRNLVSWNLMISGYLKN---GQP 238 (696)
Q Consensus 169 ~~~-----~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~ 238 (696)
... ..-......+-.+.| ...++.....+...|.+.|++.+|+..|-.-...|...+..++.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 321 122223333333333 2247788889999999999999999988633223566666666655554 544
Q ss_pred hH
Q 005454 239 KK 240 (696)
Q Consensus 239 ~~ 240 (696)
.+
T Consensus 185 ~e 186 (312)
T 2wpv_A 185 ST 186 (312)
T ss_dssp HH
T ss_pred ch
Confidence 44
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=87.65 E-value=6.3 Score=33.04 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCChhHHHHHHHHHHhCCCc------hHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhccCCChhHH
Q 005454 219 NRNLVSWNLMISGYLKNGQP------KKCIDLFQEMQLLGLNPDEV-TVSNILGACFQTGRIDDAGRLFHVIKEKDNVCW 291 (696)
Q Consensus 219 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 291 (696)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .+..-+..+.+ |
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr---------------------Y 67 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR---------------------F 67 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH---------------------H
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH---------------------H
Confidence 35777888888888877888 6777777766653 455421 11111110000 1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCchhHHHHHHHHHHhCCCCchHHHHHH
Q 005454 292 TTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASLYHGQVVHGKAVVLGVDDDLLVSSAL 364 (696)
Q Consensus 292 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 364 (696)
. .+...++.++|.++|+.++..+-+- ...+.....--.+.|++..|+++++.++..+..|....-.++
T Consensus 68 A----~~~ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 68 A----ELKAIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp H----HHHHHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred H----HHHHhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 1 1122367777777887776531111 222222222234578888888888888887776554444433
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.54 E-value=3 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44567777778888889999999999999999999999999999998764 3444556776655
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=86.31 E-value=5.5 Score=33.39 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCChhHHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCCccc-hHHHHH------HHHhhcCchhHHHHHHHHHH
Q 005454 285 EKDNVCWTTMIVGYTQNGKE------EDALILFNEMLSEDVRPDKFS-ISSVVS------SCAKLASLYHGQVVHGKAVV 351 (696)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~t-~~~ll~------~~~~~~~~~~a~~~~~~~~~ 351 (696)
..|..+|-..+...-+.|++ ++..++|++.... ++|+... +..-+. .+...++++.|+++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888764 6665321 111111 11223566666666666555
Q ss_pred hCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 005454 352 LGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPD 423 (696)
Q Consensus 352 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 423 (696)
..-.. . ..|.....--.++|+...|.+++.+.+..+.+|.
T Consensus 89 ~hKkF-A-------------------------------Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKF-A-------------------------------FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTB-H-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHH-H-------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 31111 2 2343344444556777777777777776554443
No 246
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.28 E-value=1.8 Score=36.94 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=63.5
Q ss_pred CCCCCCHH--HHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhccCCHHHHHHHHHhC--
Q 005454 418 ENLKPDSF--TFVSVLSACLHADLFERGQNHFDSISAVHGITPSL-------DHYACMINLLGRSSDVDKAVDLIKSL-- 486 (696)
Q Consensus 418 ~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-- 486 (696)
.|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45666543 44555666777888888887777655433333432 35566677778888887777777652
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHh
Q 005454 487 -----PHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSM 552 (696)
Q Consensus 487 -----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 552 (696)
+..|+.. .++ . ..... ..-..+ +.+.+.-..++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~--~~~-~---~~ss~-------p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVR--PST-G---NSAST-------PQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcc--ccc-c---ccCCC-------cccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1112110 000 0 00000 000011 223345677999999999999999999765
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.46 E-value=2.3 Score=42.98 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhh-----CCCcCCC
Q 005454 495 WSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKS-----KNVKKFA 561 (696)
Q Consensus 495 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 561 (696)
...++.++...|+.+++...++.++..+|-+-..|..|..+|.+.|+..+|.+.|+...+ -|+.|.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345666777889999999999999999998888999999999999999999999887753 4665544
No 248
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.41 E-value=6.1 Score=33.73 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHhccCCHHHHHHHHHhCCC
Q 005454 465 CMINLLGRSSDVDKAVDLIKSLPH 488 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~~~~ 488 (696)
-+...|.+.|+.++|+.+++.+|.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHCCHHHHHHHHhcCCc
Confidence 345555666666666666666654
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.22 E-value=33 Score=32.89 Aligned_cols=83 Identities=10% Similarity=0.047 Sum_probs=50.0
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQN---GQDLEALALYDKLLQENLKPDSFTFVSVLS 432 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 432 (696)
-++.....+...|.+.|++.+|+.-|-.-...+...+..|+.-+... |...++-- ..-..++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL- 196 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF- 196 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-
Confidence 47788889999999999999999887633322444554444433333 33333211 1111222
Q ss_pred HHhcCCcHHHHHHHHHHhHHh
Q 005454 433 ACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 433 a~~~~g~~~~a~~~~~~m~~~ 453 (696)
-|.-.|++..|...|+...+.
T Consensus 197 ~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 244567888888888876653
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.04 E-value=44 Score=34.12 Aligned_cols=184 Identities=10% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHhhHHhcCChHHHHHHHhcCC------CCC----chHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHH-
Q 005454 361 SSALIDMYCKCGVTDDAWTVFNMMP------TRN----VVSWNSMINGYAQNGQDLEALALYDKLLQE-NLKPDSFTFV- 428 (696)
Q Consensus 361 ~~~li~~y~~~g~~~~A~~~~~~~~------~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~- 428 (696)
+..-+..|...+++..|..++.++. .++ ...+..++..+...+++.+|...|.+..+. ...-|...+.
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~ 259 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP 259 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 3334455555566666555555432 011 123455556666667777777666665431 0111221111
Q ss_pred ---HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhcc--CCHHHHHHHHHhCCCC-C-------CHHHH
Q 005454 429 ---SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRS--SDVDKAVDLIKSLPHK-P-------NSLIW 495 (696)
Q Consensus 429 ---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~-p-------~~~~~ 495 (696)
.++.+..-++..+.-..+....... ..-++...|..++.+|... .+++.+.+.|+..... | ...-|
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 1111111111111222222333332 2335677888888888653 4677777777653221 1 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCC
Q 005454 496 STLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNV 557 (696)
Q Consensus 496 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 557 (696)
..|......|+ +..+.+ |-+...+..++..+.- ..+++.+....|...|.
T Consensus 339 ~~L~~~v~ehn--------l~~i~k--~Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 339 EDLQKRVIEHN--------LRVISE--YYSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHH--------HHHHHH--HEEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHH--------HHHHHH--HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 55555444332 111111 2233445555555533 46788999988876654
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=82.58 E-value=14 Score=28.18 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=57.8
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3455555555544432 22222222345678899999999999999999999987644 4678888888888888877
Q ss_pred CCCCCHHHHHH
Q 005454 419 NLKPDSFTFVS 429 (696)
Q Consensus 419 g~~p~~~t~~~ 429 (696)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 666555544
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.56 E-value=12 Score=28.65 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=54.3
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..++|..+-+.+...|. ....-.+-+..+...|++++|..+.+.+.-||.+.|-++... +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223347789999999999999999999999887664 66777888888877776
Q ss_pred CC
Q 005454 317 ED 318 (696)
Q Consensus 317 ~g 318 (696)
.|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 253
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.78 E-value=73 Score=35.79 Aligned_cols=247 Identities=11% Similarity=0.020 Sum_probs=112.4
Q ss_pred HHhcCCHHHHHHHHHhccCC----Chh--HHHHHHHHHHhcCChhHHHHHHHHhccCCC-------CCCccchHHHHHHH
Q 005454 267 CFQTGRIDDAGRLFHVIKEK----DNV--CWTTMIVGYTQNGKEEDALILFNEMLSEDV-------RPDKFSISSVVSSC 333 (696)
Q Consensus 267 ~~~~g~~~~A~~~~~~~~~~----~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~p~~~t~~~ll~~~ 333 (696)
....|+.+++..+++..... +.. .-..+.-|....|..+++++++...+...- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44566667777777665541 211 223334455566666667776666554211 00000111111112
Q ss_pred HhhcC-chhHHHHHHHHHHhCCCCch--HHHHHHHhhHHhcCChHHHHHHHhcCC-CC--CchHHHHHHHHHHHcCChHH
Q 005454 334 AKLAS-LYHGQVVHGKAVVLGVDDDL--LVSSALIDMYCKCGVTDDAWTVFNMMP-TR--NVVSWNSMINGYAQNGQDLE 407 (696)
Q Consensus 334 ~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~ 407 (696)
...|. -+++...+..++...-. .. ...-+|.-.|.-.|+.+....++..+. .. ++.-.-++.-++...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22222 23444444444442210 11 111233344555566666565555432 11 12222333334446677777
Q ss_pred HHHHHHHHHHCCCCCCH-HHHH---HHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhccCCHHHHHHHH
Q 005454 408 ALALYDKLLQENLKPDS-FTFV---SVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINLLGRSSDVDKAVDLI 483 (696)
Q Consensus 408 A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 483 (696)
+..+.+.+... +|. .-|. .+.-+|+..|+.....+++..+.. ....+......+.-++...|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 77777777652 222 2222 233456677777666667777765 32333333333333444456655555665
Q ss_pred HhCCCCCCHHHHH--HHHHHHHhcCCh-HHHHHHHHHHH
Q 005454 484 KSLPHKPNSLIWS--TLLSVCAMKGDI-KHGEMAARHLF 519 (696)
Q Consensus 484 ~~~~~~p~~~~~~--~ll~~~~~~g~~-~~a~~~~~~~~ 519 (696)
+.+....|..+-. .+.-+....|+. ..+...+.++.
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 5443333333222 222222223332 45566666664
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.26 E-value=41 Score=32.57 Aligned_cols=83 Identities=10% Similarity=0.079 Sum_probs=48.9
Q ss_pred CCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005454 355 DDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSAC 434 (696)
Q Consensus 355 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 434 (696)
.-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+ +|...-..++. |
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-y 197 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-Y 197 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-H
Confidence 35778888899999999999999988853223333555444444433332211 12222223332 4
Q ss_pred hcCCcHHHHHHHHHHhHH
Q 005454 435 LHADLFERGQNHFDSISA 452 (696)
Q Consensus 435 ~~~g~~~~a~~~~~~m~~ 452 (696)
.-.+++..|...++...+
T Consensus 198 L~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 198 LLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 456778888877766554
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=81.18 E-value=43 Score=39.17 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcCc
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLASL 339 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 339 (696)
...++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+... |+..+......+..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~-------- 884 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLRE-------- 884 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHH--------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcc--------
Confidence 345666677788888777765544 44555545567788999999999999988643 34333222111100
Q ss_pred hhHHHHHHHHHHhC--CCCchHHHHHHHhhHHhcCChHHHHHHHhc----CCCCCc----hHHHHHHHHHHHcCChHHHH
Q 005454 340 YHGQVVHGKAVVLG--VDDDLLVSSALIDMYCKCGVTDDAWTVFNM----MPTRNV----VSWNSMINGYAQNGQDLEAL 409 (696)
Q Consensus 340 ~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~ 409 (696)
+..+.... ...-...|..++..+.+.|..+.+.+.-+. ..+.+. ..|..+..++...|++++|.
T Consensus 885 ------~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 885 ------FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp ------HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred ------cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 11111111 111234566677777788877777655432 222221 25888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHH
Q 005454 410 ALYDKLLQENLKPDSFTFVSVLSACLHADLFER 442 (696)
Q Consensus 410 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 442 (696)
..+-.+..... -...+..|+..++..|..+.
T Consensus 959 ~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 99888876433 34566667776666655443
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.89 E-value=12 Score=41.03 Aligned_cols=53 Identities=17% Similarity=0.033 Sum_probs=45.8
Q ss_pred HHHhhcCchhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCC
Q 005454 332 SCAKLASLYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMP 385 (696)
Q Consensus 332 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 385 (696)
-|...|+++.|..+-++++...+ .+..+|..|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 35567899999999999988765 378899999999999999999999999886
No 257
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.33 E-value=11 Score=28.68 Aligned_cols=78 Identities=13% Similarity=0.033 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHHHHHHHhcc
Q 005454 237 QPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLS 316 (696)
Q Consensus 237 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 316 (696)
..++|..+-+.+...|. ....-.+-+..+...|++++|..+.+.+.-||.+.|-++... +.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45666666666655442 222222223347789999999999999999999999887654 67888888888877776
Q ss_pred CC
Q 005454 317 ED 318 (696)
Q Consensus 317 ~g 318 (696)
.|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.32 E-value=10 Score=38.06 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHH----hhCCCCChHH
Q 005454 393 NSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISA----VHGITPSLDH 462 (696)
Q Consensus 393 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 462 (696)
..++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|.+.|+...+ +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345666777888888888888877642 44667888888888888888888888877644 3577777654
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=80.09 E-value=7.6 Score=31.64 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 005454 404 QDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMIN 468 (696)
Q Consensus 404 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 468 (696)
+.-+..+-++.+....+.|+.......+.+|.+.+++..|.++|+.++. ...+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~--K~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hcCCchhhHHHHHH
Confidence 3445666677777788999999999999999999999999999999886 44455667777665
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.91 E-value=52 Score=38.41 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc----CCCh----hHHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCccchHHHHH
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIK----EKDN----VCWTTMIVGYTQNGKEEDALILFNEMLSEDVRPDKFSISSVVS 331 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 331 (696)
|..++..+.+.+..+.+.++-.... +.+. ..|..+...+...|++++|...+-.+.....+ ...+..++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 4555556666666665554443221 1221 24777888888888888888888777544332 233445555
Q ss_pred HHHhhcCc
Q 005454 332 SCAKLASL 339 (696)
Q Consensus 332 ~~~~~~~~ 339 (696)
.++..+..
T Consensus 980 ~lce~~~~ 987 (1139)
T 4fhn_B 980 QLTKQGKI 987 (1139)
T ss_dssp HHHHHCCH
T ss_pred HHHhCCCh
Confidence 55555443
No 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=78.63 E-value=32 Score=32.01 Aligned_cols=208 Identities=11% Similarity=0.007 Sum_probs=91.3
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCcc---hHHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCCCh
Q 005454 64 RLLHFYAKSGKLFYARDLFDKMPLRDII---SWNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFS 137 (696)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 137 (696)
+.+...++.|+++....+++.-...+.. .-.+.+...++.|+.+-+..+++.-..+ |..-++.| ...+..|+.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~ 85 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF-LLAAIAGSV 85 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCCH
Confidence 3444445566666666555543332111 1112334444556665555555543322 22222222 222333443
Q ss_pred hHHHHHHHHhHHCCCCCCcchH--HHHHHHHHccCChHHHHHHHHHHHHcCCCCchh------------HHHHHHHHHHc
Q 005454 138 REALQVFSRMQKDRFEPTDYTH--VSALNACAQLLDLRRGKQIHGKIVVGNLGGNVF------------VRNALTDMYAK 203 (696)
Q Consensus 138 ~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~------------~~~~li~~~~~ 203 (696)
++++.+.+.|..++.... .+.+...+..|+.+ +.+.+.+.|..++.. .....+...+.
T Consensus 86 ----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 86 ----KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp ----HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 334444445554443211 11222333445543 333444445443321 01123444556
Q ss_pred CCCHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchH--HHHHHHHHhcCCHHHHH
Q 005454 204 GGEIDKARWLFDRMNN----RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTV--SNILGACFQTGRIDDAG 277 (696)
Q Consensus 204 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~A~ 277 (696)
.|+.+-...+++.... .|..-++.+. ..+..+......++++.+.+.|..++.... .+.+...++.|..+-+.
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 236 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 7777777777765221 2222222232 234456665666777777777766554321 12233334445554444
Q ss_pred HHHH
Q 005454 278 RLFH 281 (696)
Q Consensus 278 ~~~~ 281 (696)
.+++
T Consensus 237 ~Ll~ 240 (285)
T 1wdy_A 237 RLLE 240 (285)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4444
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.59 E-value=22 Score=27.25 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=57.6
Q ss_pred chhHHHHHHHHHHhCCCCchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 005454 339 LYHGQVVHGKAVVLGVDDDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQE 418 (696)
Q Consensus 339 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 418 (696)
-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||...|-++-. .+.|..+++...+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555555544433 22222222345678899999999999999999999987754 4668888888888788777
Q ss_pred CCCCCHHHHHH
Q 005454 419 NLKPDSFTFVS 429 (696)
Q Consensus 419 g~~p~~~t~~~ 429 (696)
| .|....|..
T Consensus 99 g-~p~~q~Fa~ 108 (116)
T 2p58_C 99 Q-DPRIQTFVN 108 (116)
T ss_dssp C-CHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 665555544
No 263
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.67 E-value=14 Score=28.45 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 486 LPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 486 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
+..-|++.+..+-+.+|++.+|+..|.++++-+...-.+...+|-.+.
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444699999999999999999999999999988665544455565553
No 264
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=74.79 E-value=0.96 Score=27.55 Aligned_cols=10 Identities=30% Similarity=0.747 Sum_probs=8.7
Q ss_pred cCCccCCCCC
Q 005454 686 VGGNCSCKDN 695 (696)
Q Consensus 686 ~~g~csc~~~ 695 (696)
++|.||||-|
T Consensus 20 ~~~~C~CG~y 29 (42)
T 2l0z_A 20 SLGGCRCGKY 29 (42)
T ss_dssp TTSSBTTTTB
T ss_pred CCceeccccc
Confidence 5899999976
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=74.46 E-value=23 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
..-.|.-++.+.|++++|.+..+.+++.+|.|..+-.
T Consensus 79 cLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 79 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445667889999999999999999999998865543
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=72.92 E-value=50 Score=29.19 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=39.7
Q ss_pred CchHHHHHHHhhHHhcCChHHHHHHHhcCCCCCchHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 005454 356 DDLLVSSALIDMYCKCGVTDDAWTVFNMMPTRNVVSWNSMINGYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACL 435 (696)
Q Consensus 356 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 435 (696)
++..+-...+..+.+.|+.+....+.+.+..++...-...+.++...|.. ++...+.++.+ .||...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444555555555544333444444445544444445555555443 23333333332 344444444444444
Q ss_pred cCCcHHHHHHHHHHhH
Q 005454 436 HADLFERGQNHFDSIS 451 (696)
Q Consensus 436 ~~g~~~~a~~~~~~m~ 451 (696)
..+. .++...+..+.
T Consensus 169 ~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHCS-HHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHH
Confidence 4443 23333333333
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=72.79 E-value=37 Score=27.68 Aligned_cols=37 Identities=22% Similarity=0.100 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHH
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYI 530 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 530 (696)
.+-.|.-|+.+.|+++.|.+..+.+++.+|.|..+-.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4455667788889999999999999999998765433
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=70.44 E-value=57 Score=28.80 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHcCCC
Q 005454 190 NVFVRNALTDMYAKGGE 206 (696)
Q Consensus 190 ~~~~~~~li~~~~~~g~ 206 (696)
+..+-...+.++.+.|.
T Consensus 125 ~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 33333344444444443
No 269
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.91 E-value=7.4 Score=36.27 Aligned_cols=58 Identities=14% Similarity=0.292 Sum_probs=42.4
Q ss_pred HHHhccCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 005454 468 NLLGRSSDVDKAVDLIKS-LPHKP-NSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPIN 525 (696)
Q Consensus 468 ~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 525 (696)
..+.+.|.+++|++.... +..+| |...-..|+.-++..|++++|.+-++.+.+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 446678888888776654 44455 45566677788888888888888888888888864
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.63 E-value=36 Score=31.69 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=63.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh----HHHHHHHHHHhcc
Q 005454 398 GYAQNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL----DHYACMINLLGRS 473 (696)
Q Consensus 398 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~ 473 (696)
...+.|..++|++....-++.. +-|...-..+++-+|-.|+++.|..-++...+ +.|+. ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH----
Confidence 3445677777777776666643 44455555566666777777777776666553 23432 233333321
Q ss_pred CCHHHHH-HHHHh--C---CCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCCch
Q 005454 474 SDVDKAV-DLIKS--L---PHKPNSLIWSTLLSVCA--MKGDIKHGEMAARHLFELEPINAGP 528 (696)
Q Consensus 474 g~~~~A~-~~~~~--~---~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~ 528 (696)
+... ++|.. . ...|.. -...|+.+.. ..|+.+.|..+-.++++.-|..++.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~-w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEE-LTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHH-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 1111 22211 1 112222 2233344433 4588888888888888877766553
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.38 E-value=1e+02 Score=30.64 Aligned_cols=160 Identities=14% Similarity=-0.012 Sum_probs=77.5
Q ss_pred chHHHHHHHHhhcCchhHHHHHHHHHHhCC-CC---chHHHHHHHhhHHhcC-ChHHHHHHHhcCCC---CCchHH----
Q 005454 325 SISSVVSSCAKLASLYHGQVVHGKAVVLGV-DD---DLLVSSALIDMYCKCG-VTDDAWTVFNMMPT---RNVVSW---- 392 (696)
Q Consensus 325 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~---~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~---- 392 (696)
....+...|...|+.++...++......-. -+ .......|++.+.... ..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666665554432110 01 1233445566555432 22222232222221 111233
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhcCCcHHHHHHHHHHhHHhh-CCCCChHH--
Q 005454 393 --NSMINGYAQNGQDLEALALYDKLLQENLKPDS-----FTFVSVLSACLHADLFERGQNHFDSISAVH-GITPSLDH-- 462 (696)
Q Consensus 393 --~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~-- 462 (696)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+....... .+.|++..
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 13566677777777777777776653212121 234444555666777777777776664432 12122221
Q ss_pred --HHHHHHHHh-ccCCHHHHHHHHH
Q 005454 463 --YACMINLLG-RSSDVDKAVDLIK 484 (696)
Q Consensus 463 --~~~li~~~~-~~g~~~~A~~~~~ 484 (696)
..+-.-++. ..+++.+|...|-
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHH
Confidence 122233344 5677777765553
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.48 E-value=62 Score=29.92 Aligned_cols=16 Identities=0% Similarity=-0.151 Sum_probs=8.5
Q ss_pred hHHhcCChHHHHHHHh
Q 005454 367 MYCKCGVTDDAWTVFN 382 (696)
Q Consensus 367 ~y~~~g~~~~A~~~~~ 382 (696)
..++.|+.+-+..+++
T Consensus 225 ~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHh
Confidence 3344555555555555
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=65.30 E-value=68 Score=31.42 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCCC
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK--EEDALILFNEMLSEDVRPD 322 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 322 (696)
...++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 4567777888899999999998888663 2334455555554433 3567778888777665443
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=64.44 E-value=72 Score=27.79 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=23.0
Q ss_pred CCCCCcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCC
Q 005454 85 MPLRDIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGF 136 (696)
Q Consensus 85 ~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 136 (696)
+..+|...-...+....+.|..+....+...+..++...-...+.++.+.+.
T Consensus 54 l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 54 LKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3334444444444445555544444444444444444444444444444444
No 275
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.95 E-value=31 Score=37.16 Aligned_cols=17 Identities=12% Similarity=0.218 Sum_probs=14.4
Q ss_pred HhhcCChhHHHHHHHHh
Q 005454 536 YAACGRWEDVASIRSSM 552 (696)
Q Consensus 536 ~~~~g~~~~A~~~~~~m 552 (696)
+...|+|++|++.++++
T Consensus 548 ~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHTTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHhC
Confidence 48899999999888765
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.64 E-value=36 Score=27.79 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=38.6
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 005454 485 SLPHKPNSLIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLS 533 (696)
Q Consensus 485 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 533 (696)
.+..-|++.+..+-+.+|++.+|+..|.++++-+...-.+....|-.+.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3455699999999999999999999999999988665544455566553
No 277
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=59.24 E-value=90 Score=27.15 Aligned_cols=16 Identities=19% Similarity=0.040 Sum_probs=6.0
Q ss_pred CHHHHHHHHHHHhcCC
Q 005454 423 DSFTFVSVLSACLHAD 438 (696)
Q Consensus 423 ~~~t~~~ll~a~~~~g 438 (696)
+...-...+.++...|
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333333333333
No 278
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.14 E-value=60 Score=31.05 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhC
Q 005454 482 LIKSLPHKPNS--LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSK 555 (696)
Q Consensus 482 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 555 (696)
+|.....+|.. .+..+-+..+.+++|+..|....++++++.|.. ...++|.+++..-...
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSG--------------PRAEQARKIKNKADSM 256 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS--------------HHHHHHHHHHHHHHTS
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcC
Confidence 34445555533 367777888999999999999999999999842 2345677777666543
No 279
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=56.31 E-value=76 Score=28.03 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcCCCceeEEEECCE
Q 005454 494 IWSTLLSVCAMKGDIKHGEMAARHLFELE--PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKKFAAYSWIEIDNK 571 (696)
Q Consensus 494 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~s~i~~~~~ 571 (696)
.|-.++..| ..++...+..+|..|...+ -.-+..|...+..+...|++.+|.++++.-.+++.+|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P------------ 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP------------ 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 555555544 3455678888999887755 5556679999999999999999999999887766543
Q ss_pred EEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCcCC
Q 005454 572 VHKFVSEDRTHPETEIIYEELSKLIKKLQEAGFSPN 607 (696)
Q Consensus 572 ~~~f~~~~~~~p~~~~i~~~l~~l~~~m~~~g~~~~ 607 (696)
.+.......+...+|.+.+.+-+
T Consensus 149 -------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 149 -------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 12344556677788888877433
No 280
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=54.00 E-value=1.4e+02 Score=27.67 Aligned_cols=16 Identities=13% Similarity=-0.178 Sum_probs=6.0
Q ss_pred chHHHHHHHhhHHhcC
Q 005454 357 DLLVSSALIDMYCKCG 372 (696)
Q Consensus 357 ~~~~~~~li~~y~~~g 372 (696)
+..+-...+.++.+.|
T Consensus 141 ~~~vR~~a~~aL~~~~ 156 (280)
T 1oyz_A 141 STNVRRATAFAISVIN 156 (280)
T ss_dssp CHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHhcC
Confidence 3333333344444433
No 281
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=50.51 E-value=5 Score=27.99 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.9
Q ss_pred ceEEEecCCccccccCCccC
Q 005454 672 RTIILRDSNRFHHFVGGNCS 691 (696)
Q Consensus 672 r~i~~rd~~~~h~f~~g~cs 691 (696)
..|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45678899999999999864
No 282
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.36 E-value=84 Score=31.79 Aligned_cols=92 Identities=11% Similarity=-0.002 Sum_probs=43.5
Q ss_pred HHHHhhHHhcCChHHHHHHHhcCCC------CCchHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHH--H
Q 005454 362 SALIDMYCKCGVTDDAWTVFNMMPT------RNVVSWNSMINGYAQNGQDLEALALYDKLLQ---ENLKPDSFTFVS--V 430 (696)
Q Consensus 362 ~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~--l 430 (696)
..+.+.|.++|+++.|.+.|.++.. .-+..+-.++..+...+++..+...+.+... .+-.|+...-.. -
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 3444455555555555555544431 1122444455556666666666666655432 222232221111 1
Q ss_pred HHHHhcCCcHHHHHHHHHHhHHh
Q 005454 431 LSACLHADLFERGQNHFDSISAV 453 (696)
Q Consensus 431 l~a~~~~g~~~~a~~~~~~m~~~ 453 (696)
...+...+++..|-..|-.....
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 11234566677776666665543
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.88 E-value=49 Score=33.58 Aligned_cols=95 Identities=11% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHH----HH
Q 005454 391 SWNSMINGYAQNGQDLEALALYDKLLQENLKPD--SFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDH----YA 464 (696)
Q Consensus 391 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~ 464 (696)
++..+..-|.+.|+.++|.+.|.++......+. ...+..++..+...+++..+..+..++.....-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788999999999999999999988543444 357778888999999999999999988654333333322 12
Q ss_pred HHHHHHhccCCHHHHHHHHHh
Q 005454 465 CMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 465 ~li~~~~~~g~~~~A~~~~~~ 485 (696)
+-+-.+...+++.+|...|-.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHH
Confidence 223344568899999877754
No 284
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=49.03 E-value=1.3e+02 Score=25.89 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=31.8
Q ss_pred HHHHcCCCHHHHHHHHHhc-CC---CChhHHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCCcc
Q 005454 199 DMYAKGGEIDKARWLFDRM-NN---RNLVSWNLMISGYLKNGQ-PKKCIDLFQEMQLLGLNPDEV 258 (696)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ 258 (696)
...++.|+.+-+..+++.- .. +|..-++.+..+. ..++ ...-.++++.+.+.|..++..
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GLREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-HhccchhhHHHHHHHHHHCCCCCCcc
Confidence 3445667777777777665 22 2332333443333 3333 333456777777777666543
No 285
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=48.17 E-value=3.3 Score=21.74 Aligned_cols=13 Identities=38% Similarity=1.252 Sum_probs=9.7
Q ss_pred cccCCcc--CCCCCC
Q 005454 684 HFVGGNC--SCKDNW 696 (696)
Q Consensus 684 ~f~~g~c--sc~~~w 696 (696)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4888888 677766
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.18 E-value=1.6e+02 Score=27.50 Aligned_cols=8 Identities=13% Similarity=0.551 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 005454 106 VQDLRALF 113 (696)
Q Consensus 106 ~~~A~~~f 113 (696)
..+..+++
T Consensus 12 ~~~v~~lL 19 (285)
T 3kea_A 12 SKQLKSFL 19 (285)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444444
No 287
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=47.17 E-value=93 Score=27.21 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=40.3
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhH
Q 005454 476 VDKAVDLIKSLPHKPNSL-------IWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWED 544 (696)
Q Consensus 476 ~~~A~~~~~~~~~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 544 (696)
++.|+.+++.+...-+.. +--..+..|.+.|.+++|.+++++.++-.|.+...-..|..+-.+...+..
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~ 169 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHS 169 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcH
Confidence 456667776665543311 122335678999999999999999998887666665566555444443333
No 288
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=44.14 E-value=43 Score=30.81 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=17.3
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPTD 156 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 156 (696)
...++.|+.+....+++.+.+.|..++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~ 37 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTD 37 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcch
Confidence 3345567777766677766666655553
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.87 E-value=1.4e+02 Score=24.90 Aligned_cols=49 Identities=10% Similarity=0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcC
Q 005454 511 GEMAARHLFELE--PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559 (696)
Q Consensus 511 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 559 (696)
+..+|+.+...+ ..-+..|...+..+...|++.+|.++++.-.+++.+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 677777776654 4455568888888999999999999998777766543
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.86 E-value=2.7e+02 Score=27.63 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=21.5
Q ss_pred HHHHHccCChHHHHHHHccCCCCC---cchHHHHHHHHHccCChhHHHHHHhc
Q 005454 66 LHFYAKSGKLFYARDLFDKMPLRD---IISWNALLSAHARSGSVQDLRALFDK 115 (696)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~ 115 (696)
+...+..|+++-++.+++.-..++ .... +.+..-++.|+.+-+.-+++.
T Consensus 18 L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~-t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVE-TPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSCCSSSCCC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 334445555555555555433221 1111 223333445555555555544
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.66 E-value=1.4e+02 Score=24.12 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCC
Q 005454 261 SNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK--EEDALILFNEMLSEDVRP 321 (696)
Q Consensus 261 ~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 321 (696)
..++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445666777777777777777776542 2233444445544432 356667777776655433
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=40.79 E-value=1.1e+02 Score=24.78 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHhHHCCCCCC
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRD---SVSYNTAIAGFANKGF--SREALQVFSRMQKDRFEPT 155 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 155 (696)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+....++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567777777778888888877776552 2233344444444432 3456677777776665443
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=36.20 E-value=1.9e+02 Score=25.50 Aligned_cols=15 Identities=20% Similarity=0.297 Sum_probs=6.9
Q ss_pred HccCChHHHHHHHcc
Q 005454 70 AKSGKLFYARDLFDK 84 (696)
Q Consensus 70 ~~~g~~~~a~~~~~~ 84 (696)
++.|+++....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 344444444444443
No 294
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=35.97 E-value=8.2 Score=23.77 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=8.8
Q ss_pred ecccccCchhH
Q 005454 651 KNIRVCGDCHL 661 (696)
Q Consensus 651 kn~~~c~~ch~ 661 (696)
-|-|||.+||.
T Consensus 15 ~~YRvC~~Cgk 25 (44)
T 2lo3_A 15 IQYRVCEKCGK 25 (44)
T ss_dssp CCEEECTTTCC
T ss_pred ccchhhcccCC
Confidence 36799999973
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.41 E-value=2.3e+02 Score=24.93 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCC--CChh---HHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 005454 208 DKARWLFDRMNN--RNLV---SWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 208 ~~A~~~~~~~~~--~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
+.+.+.|..... .|+. .|-..+..+ ..+...++.++|..|...|+--...
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~A------------------------ 115 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLS------------------------ 115 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBH------------------------
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHH------------------------
Confidence 344444444433 3433 344444433 2344568888888888877643322
Q ss_pred ccCCChhHHHHHHHHHHhcCChhHHHHHHHHhccCCCCC
Q 005454 283 IKEKDNVCWTTMIVGYTQNGKEEDALILFNEMLSEDVRP 321 (696)
Q Consensus 283 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 321 (696)
..|......+...|++.+|.++|+.-++.+-.|
T Consensus 116 ------lfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 116 ------LFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp ------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 224444555555666666666666666555555
No 296
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.65 E-value=2.1e+02 Score=24.23 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCCCcC
Q 005454 511 GEMAARHLFELE--PINAGPYIMLSNMYAACGRWEDVASIRSSMKSKNVKK 559 (696)
Q Consensus 511 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 559 (696)
...+|..|...+ ..-+..|...+..+...|++.+|.++++.-.+++.+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 566777776654 4556678899999999999999999998887766543
No 297
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=34.61 E-value=1.2e+02 Score=25.39 Aligned_cols=62 Identities=11% Similarity=0.250 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCC
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK--EEDALILFNEMLSEDVRP 321 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 321 (696)
...++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3445666777777777777777776542 2233444445544322 345667777776555433
No 298
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=34.48 E-value=14 Score=30.15 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=28.1
Q ss_pred CcEEEE----ecccccCchhHHHHHHhhhcCceEEEecCCccccccCCccC
Q 005454 645 TPIRIM----KNIRVCGDCHLFMKFASDIIGRTIILRDSNRFHHFVGGNCS 691 (696)
Q Consensus 645 ~~~~~~----kn~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~cs 691 (696)
..+||+ ++.+||-+| .++..-..-++.-+||+|.++.|-
T Consensus 45 ~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 45 STFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred cEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 557774 568888887 344444445788999999999873
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=32.36 E-value=5e+02 Score=27.84 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=25.6
Q ss_pred HHHHHHHccCChhHHHHHHhcCCC---CCcchHHHHHHHHHh
Q 005454 95 ALLSAHARSGSVQDLRALFDKMPI---RDSVSYNTAIAGFAN 133 (696)
Q Consensus 95 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 133 (696)
++|-.+.|||.+++|.++.++... .-...+...+..|+.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC--
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHh
Confidence 677888899999999998887742 122456666666664
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=32.20 E-value=2.6e+02 Score=24.61 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=5.0
Q ss_pred cCCCHHHHHHHH
Q 005454 203 KGGEIDKARWLF 214 (696)
Q Consensus 203 ~~g~~~~A~~~~ 214 (696)
+.|+.+....++
T Consensus 18 ~~g~~~~v~~Ll 29 (241)
T 1k1a_A 18 VQGNLPAVHRLV 29 (241)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 344444444433
No 301
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=32.08 E-value=95 Score=23.15 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHHHHHHcCCcCCCCccccccchhHHhhhhhhhhHHHHHHhhhccCCCCCCcEEEEecccccCchhHHH
Q 005454 584 ETEIIYEELSKLIKKLQEAGFSPNTKLVLHDTQEEEKVKSICYHSEKLALAYCLIKKPHGVTPIRIMKNIRVCGDCHLFM 663 (696)
Q Consensus 584 ~~~~i~~~l~~l~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~kn~~~c~~ch~~~ 663 (696)
+-.+|...+++..++++..||.||...+-.. ...+-+|-+-.-|| .. .|+--+-|++|
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~G~e--------ayef~~e~v~~e~g-----~e-~~~l~~s~LkV-------- 71 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILFGRE--------AYNFLSNLLKKEME-----EE-GPFTHVSNIKI-------- 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEECHH--------HHHHHHHHHHHHHT-----CC-CCCCEETTEEE--------
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH--------HHHHHHHHHhHhhc-----cc-cchhhccCceE--------
Confidence 3456788889999999999999998765321 22344555555565 12 34444455554
Q ss_pred HHHhhhcCceEEEecCC
Q 005454 664 KFASDIIGRTIILRDSN 680 (696)
Q Consensus 664 k~~s~~~~r~i~~rd~~ 680 (696)
++-+-.|..-||-|++
T Consensus 72 -~~ieELG~DAVV~DSK 87 (103)
T 2pk8_A 72 -EILEELGGDAVVIDSK 87 (103)
T ss_dssp -EECGGGTTEEEEECTT
T ss_pred -EEHHhcCCceEEEehh
Confidence 2234455666666643
No 302
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=31.72 E-value=1e+02 Score=25.74 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=34.2
Q ss_pred HHHHHHHHHccCChhHHHHHHhcCCCCC---cchHHHHHHHHHhCCC--hhHHHHHHHHhHHCCCCC
Q 005454 93 WNALLSAHARSGSVQDLRALFDKMPIRD---SVSYNTAIAGFANKGF--SREALQVFSRMQKDRFEP 154 (696)
Q Consensus 93 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 154 (696)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 3456667777777777777777765542 2223334444444322 344566666666655443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.65 E-value=1.7e+02 Score=26.63 Aligned_cols=23 Identities=9% Similarity=-0.048 Sum_probs=16.9
Q ss_pred HHHHHHhCCChhHHHHHHHHhHH
Q 005454 127 AIAGFANKGFSREALQVFSRMQK 149 (696)
Q Consensus 127 li~~~~~~g~~~~A~~l~~~m~~ 149 (696)
-++.+....++++|.+++++..+
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35677778888888888776653
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.47 E-value=1.2e+02 Score=27.62 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=41.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 005454 396 INGYAQNGQDLEALALYDKLLQ--ENLKP----DSFTFVSVLSACLHADLFERGQNHFDSISAVHGITPSLDHYACMINL 469 (696)
Q Consensus 396 i~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 469 (696)
+..+..+.++++|++++++..+ .++++ +.......+..-.....-.-+..+.+.+. -.++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 5566666777777777665543 12221 11122222222222222222223333331 14455556666788
Q ss_pred HhccCCHHHHHHHHH
Q 005454 470 LGRSSDVDKAVDLIK 484 (696)
Q Consensus 470 ~~~~g~~~~A~~~~~ 484 (696)
+.+.|+-++|.++|=
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 888888888887763
No 305
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.53 E-value=1.4e+02 Score=26.45 Aligned_cols=175 Identities=12% Similarity=0.025 Sum_probs=79.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCCCcch---HHHHHHHHHccCChhHHHHHHhcCCCC---CcchHHHHHHHHHhCCCh
Q 005454 64 RLLHFYAKSGKLFYARDLFDKMPLRDIIS---WNALLSAHARSGSVQDLRALFDKMPIR---DSVSYNTAIAGFANKGFS 137 (696)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~ 137 (696)
+.+...++.|+++-+..+++.-...+... -.+.+...++.|+.+-+..+++.-..+ +...++.+ ...+..|+.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~ 122 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHT 122 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHH
Confidence 34555666777777777776654332111 112334445566666666666543322 22222333 333444554
Q ss_pred hHHHHHHHHhHHCCCCCCcc---hHHHHHHHHHccCChHHHHHHHHHHHHcCCCCchhH---HHHHHHHHHcCCCHHHHH
Q 005454 138 REALQVFSRMQKDRFEPTDY---THVSALNACAQLLDLRRGKQIHGKIVVGNLGGNVFV---RNALTDMYAKGGEIDKAR 211 (696)
Q Consensus 138 ~~A~~l~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~ 211 (696)
+ +++.+.+.|..++.. -.+.+..++...+..+ +...+.+.|..++... ..+.+...+..|+.+-+.
T Consensus 123 ~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~----~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 194 (240)
T 3eu9_A 123 S----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD----PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194 (240)
T ss_dssp H----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST----THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH
T ss_pred H----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH----HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH
Confidence 3 334444445444332 2233333433333222 2233444454433221 123444555677777777
Q ss_pred HHHHhcCCCChhH--HHHHHHHHHhCCCchHHHHHHHH
Q 005454 212 WLFDRMNNRNLVS--WNLMISGYLKNGQPKKCIDLFQE 247 (696)
Q Consensus 212 ~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~ 247 (696)
.+++.-..++... -.+-+....+.|+.+-+.-+++.
T Consensus 195 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 7776643332211 01223334555665554444443
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.36 E-value=2.4e+02 Score=27.18 Aligned_cols=82 Identities=12% Similarity=0.047 Sum_probs=34.4
Q ss_pred HHHHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHH
Q 005454 64 RLLHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKMPIRDSVSYNTAIAGFANKGFSREA 140 (696)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 140 (696)
+.+...+..|+++.+..+++.-... |..-++ .+...++.|+.+-+.-+++.-...+...-.+.+...+..|+.+-+
T Consensus 22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 100 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLV 100 (364)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHH
Confidence 3344444555555555555543222 222222 223334445555555555544333221112223333445555544
Q ss_pred HHHHHH
Q 005454 141 LQVFSR 146 (696)
Q Consensus 141 ~~l~~~ 146 (696)
..+++.
T Consensus 101 ~~Ll~~ 106 (364)
T 3ljn_A 101 VALVEG 106 (364)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444444
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.25 E-value=2.3e+02 Score=24.98 Aligned_cols=27 Identities=11% Similarity=-0.052 Sum_probs=14.9
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCC
Q 005454 129 AGFANKGFSREALQVFSRMQKDRFEPT 155 (696)
Q Consensus 129 ~~~~~~g~~~~A~~l~~~m~~~g~~p~ 155 (696)
...++.|+.+-...+++.+.+.|..++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 334555666666666665555554444
No 308
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.14 E-value=2.8e+02 Score=24.32 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc
Q 005454 395 MINGYA---QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439 (696)
Q Consensus 395 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (696)
+|+++. +..+.+.|+-.+-+|++.| .|..+.-..++.+...-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 455554 4688999999999999999 8887777777777766664
No 309
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=29.97 E-value=10 Score=27.59 Aligned_cols=14 Identities=43% Similarity=0.978 Sum_probs=10.9
Q ss_pred ecccccCchhHHHH
Q 005454 651 KNIRVCGDCHLFMK 664 (696)
Q Consensus 651 kn~~~c~~ch~~~k 664 (696)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 34599999998764
No 310
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.40 E-value=3.3e+02 Score=24.89 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=7.2
Q ss_pred CCChhHHHHHHHHHHhcCC
Q 005454 285 EKDNVCWTTMIVGYTQNGK 303 (696)
Q Consensus 285 ~~~~~~~~~li~~~~~~g~ 303 (696)
.++...-...+.++...|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444443344444444443
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.41 E-value=1.5e+02 Score=30.53 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhHHhhCCCCCh--HHH-HHHHHHHhccCCHHHHHHHHHh
Q 005454 425 FTFVSVLSACLHADLFERGQNHFDSISAVHGITPSL--DHY-ACMINLLGRSSDVDKAVDLIKS 485 (696)
Q Consensus 425 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~-~~li~~~~~~g~~~~A~~~~~~ 485 (696)
..++.+++-|.+.+.+++|..+.....--..-.++. ..| -.+...+.-.+++.+|.+.+..
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 467777788888888888888887663100001111 122 2345566677888888777765
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.07 E-value=3.1e+02 Score=24.00 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=10.4
Q ss_pred HHHHHccCChhHHHHHHhc
Q 005454 97 LSAHARSGSVQDLRALFDK 115 (696)
Q Consensus 97 i~~~~~~g~~~~A~~~f~~ 115 (696)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444555666666655554
No 313
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.40 E-value=1.9e+02 Score=27.64 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=42.4
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHHHHHhhhCC
Q 005454 482 LIKSLPHKPNS--LIWSTLLSVCAMKGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASIRSSMKSKN 556 (696)
Q Consensus 482 ~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 556 (696)
+|.....+|.. .+..+-+..+.+++|+..|....++++++.|.. ...++|.+++..-...+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~--------------~~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP--------------EVAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH--------------HHHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH--------------HHHHHHHHHHHHHhcCC
Confidence 34444555533 366777888899999999999999999998741 12355777776665443
No 314
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.22 E-value=2.4e+02 Score=24.93 Aligned_cols=50 Identities=20% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHccCChHHHHHHHccCCCC---CcchHHHHHHHHHccCChhHHHHHHhcC
Q 005454 66 LHFYAKSGKLFYARDLFDKMPLR---DIISWNALLSAHARSGSVQDLRALFDKM 116 (696)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~~ 116 (696)
+...+..|+.+-+..+++.-... +....+ .+...+..|+.+-+..+++.-
T Consensus 48 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGST-CLHLAAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCC-HHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHhCC
Confidence 34444566666666666543322 222122 233334456666555555543
No 315
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.53 E-value=3.3e+02 Score=23.86 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=35.1
Q ss_pred HHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCc
Q 005454 395 MINGYA---QNGQDLEALALYDKLLQENLKPDSFTFVSVLSACLHADL 439 (696)
Q Consensus 395 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 439 (696)
+|+++. +..+.+.|+-.+-+|++.|-.|..+.-..++.+...-|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 556654 468999999999999999988888877777777666553
No 316
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.11 E-value=2.8e+02 Score=24.66 Aligned_cols=68 Identities=13% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHhhCCCCCh------HHHHHHHHHHhccCCHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCC
Q 005454 440 FERGQNHFDSISAVHGITPSL------DHYACMINLLGRSSDVDKAVDLIKS-LPHKPNSLIWSTLLSVCAMKGD 507 (696)
Q Consensus 440 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~ll~~~~~~g~ 507 (696)
++.|+.+|+.+.+...+.... -.--..+-.|.+.|.+++|.+++++ +...|+..-...-+....+.+|
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.93 E-value=2e+02 Score=27.89 Aligned_cols=25 Identities=8% Similarity=0.110 Sum_probs=11.9
Q ss_pred HHHHHHHHccCChHHHHHHHccCCC
Q 005454 63 NRLLHFYAKSGKLFYARDLFDKMPL 87 (696)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~~~~ 87 (696)
..++.=|...|++++|.+.++.+..
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~ 39 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELAS 39 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 3344444444555555555554443
No 318
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.68 E-value=94 Score=23.61 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCchHHHH
Q 005454 205 GEIDKARWLFDRMNNRNLVSWNLMISGYLKNGQPKKCID 243 (696)
Q Consensus 205 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 243 (696)
...+.|.++++.++.++..+|..++.++...|+..-|..
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 468899999999999999999999999977777655543
No 319
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=23.30 E-value=1.2e+02 Score=23.09 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhccCCChhHHHHHHHHHHhcCChhHHH
Q 005454 271 GRIDDAGRLFHVIKEKDNVCWTTMIVGYTQNGKEEDAL 308 (696)
Q Consensus 271 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 308 (696)
.+.+.|.++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 320
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.98 E-value=5.3e+02 Score=25.07 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHccCCCCC--cchHHHHHHHHHccC--ChhHHHHHHhcCCCCCcchHHHHHHHHH
Q 005454 61 LHNRLLHFYAKSGKLFYARDLFDKMPLRD--IISWNALLSAHARSG--SVQDLRALFDKMPIRDSVSYNTAIAGFA 132 (696)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~~li~~~~ 132 (696)
....+|.=|...|++++|...++.+..+. ......+|..-...+ .-+.+-.++..+. .++.+-..+..++.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~ 130 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTNDVEKSFD 130 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT-TTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 45677788888888888888888887653 333334444333322 2234555666665 35666555555543
No 321
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.60 E-value=1.7e+02 Score=24.23 Aligned_cols=86 Identities=13% Similarity=0.281 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHcCCcCCCCcc------------c--cccchhHHhhhhhhhhHHHHHHhhhccCCCC-CCcEEEEec-
Q 005454 589 YEELSKLIKKLQEAGFSPNTKLV------------L--HDTQEEEKVKSICYHSEKLALAYCLIKKPHG-VTPIRIMKN- 652 (696)
Q Consensus 589 ~~~l~~l~~~m~~~g~~~~~~~~------------~--~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~~kn- 652 (696)
.+++.+...+..+..|.|-..+- . .+++. ..-.+..|.|+.|+.-+.-. ... -..|-|+.+
T Consensus 15 ~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~~G~NvEn--as~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 15 VQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIFSGCNIEN--ACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEEEEECBCC--SSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEEEEEeccc--cCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 34455555566677788743321 1 12221 12236789999999777654 222 122334444
Q ss_pred ----ccccCchhHHHHHHhhhcCceEEEecC
Q 005454 653 ----IRVCGDCHLFMKFASDIIGRTIILRDS 679 (696)
Q Consensus 653 ----~~~c~~ch~~~k~~s~~~~r~i~~rd~ 679 (696)
+-=|+.|-.++.-+. .+-+|++-+.
T Consensus 92 ~~~~~~PCG~Crq~l~E~~--~~~~v~~~~~ 120 (146)
T 2fr5_A 92 QEEFISPCGACRQVMREFG--TDWAVYMTKP 120 (146)
T ss_dssp SSSCCCCCHHHHHHHHHTC--SSCEEEEECT
T ss_pred CCcccCCCHHHHHHHHHhC--CCCEEEEECC
Confidence 556999998887776 5566777653
No 322
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.54 E-value=2.5e+02 Score=23.05 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 005454 223 VSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271 (696)
Q Consensus 223 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 271 (696)
..-..++..+...+.+-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 3334444445455555556666666655544444444444444433333
No 323
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.81 E-value=3.3e+02 Score=23.92 Aligned_cols=39 Identities=8% Similarity=0.107 Sum_probs=28.6
Q ss_pred HhcCChhHHHHHHHHhccCCCCCCccchHHHHHHHHhhcC
Q 005454 299 TQNGKEEDALILFNEMLSEDVRPDKFSISSVVSSCAKLAS 338 (696)
Q Consensus 299 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 338 (696)
.+..+++.|+-.+-+|++.| .|....-..++.+....|.
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 45689999999999999998 7766555556666555543
No 324
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.58 E-value=2e+02 Score=29.63 Aligned_cols=44 Identities=23% Similarity=0.270 Sum_probs=25.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHhhcCChhHHHHH
Q 005454 505 KGDIKHGEMAARHLFELEPINAGPYIMLSNMYAACGRWEDVASI 548 (696)
Q Consensus 505 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 548 (696)
....+.|...|.++..+.|.+..+|+.|+-+....|+.-+|.-.
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 34445666666666666666666666666666655555554433
No 325
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.07 E-value=3.8e+02 Score=22.65 Aligned_cols=39 Identities=8% Similarity=-0.024 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCCcchH--HHHHHHHHhcCCHHHHHHHHHh
Q 005454 244 LFQEMQLLGLNPDEVTV--SNILGACFQTGRIDDAGRLFHV 282 (696)
Q Consensus 244 l~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~A~~~~~~ 282 (696)
+++.+.+.|..++.... .+.+...+..|+.+-+..+++.
T Consensus 54 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 54 IAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH 94 (201)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 44444455554443221 1223334455666666666643
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.06 E-value=83 Score=21.38 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=22.7
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 005454 137 SREALQVFSRMQKDRFEPTDYTHVSALNAC 166 (696)
Q Consensus 137 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 166 (696)
.++|.+.|.+|++..-.+...||.-+++.+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 468889998888654455567888888877
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.84 E-value=5.4e+02 Score=24.35 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCC--hhHHHHHHHHhccCCCCC
Q 005454 260 VSNILGACFQTGRIDDAGRLFHVIKEKD---NVCWTTMIVGYTQNGK--EEDALILFNEMLSEDVRP 321 (696)
Q Consensus 260 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 321 (696)
...++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 3467777888999999999999998662 2334445555554432 455667888777665444
No 328
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.81 E-value=4.9e+02 Score=24.81 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=18.6
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHcCCCHHHHHHHHHhc
Q 005454 178 IHGKIVVGNLGGNVFVRNALTDMYAKGGEIDKARWLFDRM 217 (696)
Q Consensus 178 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 217 (696)
++..+.+.|+.|..++..-++..+.+.=.++.+.++++.+
T Consensus 210 L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~ 249 (331)
T 3qye_A 210 LYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMI 249 (331)
T ss_dssp HHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 329
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=20.01 E-value=3.5e+02 Score=22.25 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=31.0
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 005454 220 RNLVSWNLMISGYLKNGQPKKCIDLFQEMQLLGLNPDEVTVSNILGACFQTG 271 (696)
Q Consensus 220 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 271 (696)
+....-..++..+...+.+-.|.++++.+.+.+...+..|.--.|..+...|
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344444566666666667777788887777665555555555555544444
Done!