Query 005459
Match_columns 696
No_of_seqs 591 out of 3660
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 23:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2006 WD40 repeat protein [G 100.0 1E-40 2.2E-45 364.0 18.0 442 228-695 121-579 (1023)
2 KOG0291 WD40-repeat-containing 100.0 4.8E-36 1E-40 315.1 41.7 451 17-529 94-612 (893)
3 KOG0271 Notchless-like WD40 re 100.0 6.7E-38 1.4E-42 305.7 24.0 344 38-479 85-479 (480)
4 KOG0271 Notchless-like WD40 re 100.0 1.7E-36 3.8E-41 295.8 23.5 331 204-569 111-479 (480)
5 KOG0291 WD40-repeat-containing 100.0 1.5E-31 3.4E-36 281.2 45.6 458 20-571 56-612 (893)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-34 4.8E-39 285.0 21.6 275 67-479 175-458 (459)
7 KOG0272 U4/U6 small nuclear ri 100.0 7.3E-33 1.6E-37 274.3 18.3 271 255-569 173-458 (459)
8 KOG0318 WD40 repeat stress pro 100.0 3.7E-29 8.1E-34 254.0 44.5 458 20-572 60-561 (603)
9 KOG0318 WD40 repeat stress pro 100.0 4.1E-30 8.8E-35 260.9 34.7 376 23-419 194-601 (603)
10 KOG0319 WD40-repeat-containing 100.0 1.6E-30 3.5E-35 273.6 32.8 450 20-569 106-617 (775)
11 KOG0319 WD40-repeat-containing 100.0 5.2E-29 1.1E-33 262.3 30.2 381 20-482 193-620 (775)
12 KOG0286 G-protein beta subunit 100.0 6.6E-29 1.4E-33 235.6 27.2 282 66-479 54-343 (343)
13 KOG0279 G protein beta subunit 100.0 1.9E-27 4E-32 224.6 29.0 277 253-571 11-313 (315)
14 KOG0279 G protein beta subunit 100.0 1.5E-27 3.3E-32 225.1 26.5 278 203-528 10-312 (315)
15 KOG0645 WD40 repeat protein [G 100.0 6.3E-27 1.4E-31 220.0 28.0 276 253-571 10-311 (312)
16 KOG0263 Transcription initiati 100.0 2.8E-28 6.1E-33 259.7 20.6 238 211-482 369-650 (707)
17 KOG0263 Transcription initiati 100.0 2.7E-28 5.8E-33 259.9 19.9 242 204-470 447-703 (707)
18 KOG0286 G-protein beta subunit 100.0 4.8E-27 1E-31 222.9 25.7 277 203-527 50-343 (343)
19 KOG0273 Beta-transducin family 100.0 6.5E-27 1.4E-31 235.0 26.3 321 66-512 177-511 (524)
20 KOG0284 Polyadenylation factor 100.0 3.6E-28 7.9E-33 239.9 14.6 265 224-529 102-380 (464)
21 KOG0306 WD40-repeat-containing 100.0 3.4E-25 7.4E-30 233.6 37.1 263 222-529 377-664 (888)
22 KOG0306 WD40-repeat-containing 100.0 3.6E-25 7.9E-30 233.4 35.1 490 28-570 31-663 (888)
23 KOG0645 WD40 repeat protein [G 100.0 5.4E-26 1.2E-30 213.8 25.5 269 206-528 12-310 (312)
24 KOG0276 Vesicle coat complex C 100.0 4E-25 8.7E-30 228.5 34.2 408 67-570 13-489 (794)
25 KOG0284 Polyadenylation factor 99.9 1.6E-27 3.4E-32 235.4 15.6 277 67-480 96-379 (464)
26 KOG1408 WD40 repeat protein [F 99.9 6.5E-25 1.4E-29 229.5 35.9 323 224-572 330-714 (1080)
27 KOG0315 G-protein beta subunit 99.9 6.8E-25 1.5E-29 203.8 27.1 279 33-398 12-305 (311)
28 KOG0276 Vesicle coat complex C 99.9 1.6E-25 3.5E-30 231.5 25.4 350 131-569 12-378 (794)
29 KOG0273 Beta-transducin family 99.9 6.7E-25 1.5E-29 220.6 25.8 316 21-480 180-522 (524)
30 KOG0315 G-protein beta subunit 99.9 2.4E-25 5.3E-30 206.8 20.8 225 226-484 48-291 (311)
31 KOG0266 WD40 repeat-containing 99.9 5.1E-25 1.1E-29 241.0 27.0 268 224-529 165-454 (456)
32 KOG0296 Angio-associated migra 99.9 2.7E-24 5.9E-29 210.1 28.5 316 20-481 65-398 (399)
33 KOG0296 Angio-associated migra 99.9 2.7E-24 5.8E-29 210.1 26.3 311 223-570 69-397 (399)
34 KOG0266 WD40 repeat-containing 99.9 9.2E-25 2E-29 239.0 26.0 269 136-481 165-454 (456)
35 KOG0285 Pleiotropic regulator 99.9 1.1E-24 2.4E-29 211.8 22.3 276 254-571 148-439 (460)
36 KOG0281 Beta-TrCP (transducin 99.9 9.6E-26 2.1E-30 218.1 13.3 272 132-483 197-479 (499)
37 KOG0295 WD40 repeat-containing 99.9 5.7E-25 1.2E-29 214.6 18.6 263 224-527 114-404 (406)
38 KOG0281 Beta-TrCP (transducin 99.9 3.9E-25 8.5E-30 213.9 13.7 257 226-529 203-477 (499)
39 KOG0293 WD40 repeat-containing 99.9 5E-24 1.1E-28 210.7 21.7 279 20-381 225-513 (519)
40 KOG0265 U5 snRNP-specific prot 99.9 2.2E-23 4.8E-28 199.0 24.2 277 254-567 44-334 (338)
41 KOG0278 Serine/threonine kinas 99.9 7.8E-25 1.7E-29 203.3 13.7 267 137-484 24-300 (334)
42 cd00200 WD40 WD40 domain, foun 99.9 6.8E-23 1.5E-27 209.3 29.7 218 228-479 61-289 (289)
43 KOG0295 WD40 repeat-containing 99.9 7.7E-24 1.7E-28 206.8 21.0 275 130-480 106-405 (406)
44 PLN00181 protein SPA1-RELATED; 99.9 5.8E-23 1.2E-27 241.3 32.8 228 229-480 544-792 (793)
45 PLN00181 protein SPA1-RELATED; 99.9 5.7E-23 1.2E-27 241.4 31.3 272 222-527 487-791 (793)
46 KOG0285 Pleiotropic regulator 99.9 2.4E-23 5.1E-28 202.6 21.8 273 206-529 149-439 (460)
47 KOG0265 U5 snRNP-specific prot 99.9 3.6E-23 7.8E-28 197.5 22.6 225 207-476 89-332 (338)
48 cd00200 WD40 WD40 domain, foun 99.9 3.6E-22 7.8E-27 203.9 30.1 269 206-527 7-289 (289)
49 KOG0316 Conserved WD40 repeat- 99.9 6.9E-23 1.5E-27 189.0 21.9 265 254-562 14-291 (307)
50 KOG1408 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 210.8 27.1 417 20-482 166-714 (1080)
51 KOG0305 Anaphase promoting com 99.9 4.3E-22 9.2E-27 209.6 27.0 264 31-482 188-462 (484)
52 KOG0292 Vesicle coat complex C 99.9 4.8E-21 1E-25 205.4 34.3 332 137-570 16-396 (1202)
53 KOG0313 Microtubule binding pr 99.9 4.2E-22 9.1E-27 195.7 23.7 268 132-480 105-417 (423)
54 KOG0293 WD40 repeat-containing 99.9 8.5E-23 1.8E-27 202.1 17.8 278 253-571 220-513 (519)
55 KOG0275 Conserved WD40 repeat- 99.9 1.7E-23 3.7E-28 200.7 10.8 266 222-527 217-507 (508)
56 KOG1407 WD40 repeat protein [F 99.9 1.4E-21 3.1E-26 183.1 23.1 247 224-512 26-288 (313)
57 KOG0282 mRNA splicing factor [ 99.9 4.8E-23 1E-27 208.2 13.7 255 253-527 210-503 (503)
58 KOG0640 mRNA cleavage stimulat 99.9 2.1E-22 4.5E-27 192.6 16.8 238 204-480 168-425 (430)
59 PTZ00421 coronin; Provisional 99.9 6.4E-21 1.4E-25 208.1 28.8 225 253-511 71-318 (493)
60 KOG1539 WD repeat protein [Gen 99.9 1.2E-19 2.7E-24 194.2 37.1 335 211-571 162-606 (910)
61 KOG0275 Conserved WD40 repeat- 99.9 9E-23 2E-27 195.8 11.9 280 258-569 215-507 (508)
62 KOG0313 Microtubule binding pr 99.9 2E-21 4.2E-26 191.0 21.4 262 230-529 115-418 (423)
63 KOG0292 Vesicle coat complex C 99.9 1.2E-20 2.5E-25 202.5 28.2 294 226-574 17-324 (1202)
64 KOG2096 WD40 repeat protein [G 99.9 1.4E-20 3E-25 180.9 23.5 322 42-478 63-399 (420)
65 KOG0641 WD40 repeat protein [G 99.9 1E-19 2.2E-24 166.9 27.0 244 21-339 34-305 (350)
66 KOG0274 Cdc4 and related F-box 99.9 9.9E-21 2.1E-25 206.8 24.1 269 132-485 208-486 (537)
67 KOG2048 WD40 repeat protein [G 99.9 2.3E-18 5.1E-23 180.9 39.5 241 19-340 25-278 (691)
68 KOG0283 WD40 repeat-containing 99.9 5.1E-21 1.1E-25 206.3 19.9 248 255-571 265-576 (712)
69 KOG0772 Uncharacterized conser 99.9 1E-20 2.2E-25 192.3 20.8 284 70-416 170-483 (641)
70 KOG0643 Translation initiation 99.9 9.4E-21 2E-25 178.1 18.9 280 253-572 6-318 (327)
71 KOG0643 Translation initiation 99.9 4.3E-20 9.4E-25 173.7 23.1 254 203-481 5-317 (327)
72 KOG0283 WD40 repeat-containing 99.9 2.4E-20 5.2E-25 201.2 23.5 201 204-482 365-577 (712)
73 KOG0277 Peroxisomal targeting 99.9 1.3E-20 2.8E-25 176.1 18.4 220 229-480 72-308 (311)
74 KOG0277 Peroxisomal targeting 99.9 1E-20 2.2E-25 176.8 17.6 235 256-528 59-308 (311)
75 KOG2096 WD40 repeat protein [G 99.9 7.8E-20 1.7E-24 175.7 22.9 287 20-373 87-392 (420)
76 KOG1063 RNA polymerase II elon 99.9 4.3E-19 9.4E-24 186.5 30.5 392 69-529 193-699 (764)
77 KOG0316 Conserved WD40 repeat- 99.9 3.2E-20 7E-25 171.4 19.3 234 205-484 14-260 (307)
78 PTZ00420 coronin; Provisional 99.9 4.3E-19 9.4E-24 194.6 29.7 240 238-510 52-320 (568)
79 KOG1407 WD40 repeat protein [F 99.8 2.5E-19 5.4E-24 168.2 22.1 256 21-362 22-284 (313)
80 KOG0973 Histone transcription 99.8 1.7E-19 3.7E-24 199.3 24.6 306 69-484 15-358 (942)
81 KOG0288 WD40 repeat protein Ti 99.8 1.4E-20 3E-25 186.9 14.2 263 224-526 181-458 (459)
82 KOG0274 Cdc4 and related F-box 99.8 1.7E-19 3.8E-24 197.1 24.3 263 260-572 212-483 (537)
83 KOG2106 Uncharacterized conser 99.8 4.4E-18 9.5E-23 172.8 32.3 423 2-480 182-625 (626)
84 KOG2048 WD40 repeat protein [G 99.8 8E-18 1.7E-22 177.0 35.2 422 68-571 26-505 (691)
85 KOG1446 Histone H3 (Lys4) meth 99.8 1.7E-18 3.7E-23 167.5 27.7 278 67-420 14-303 (311)
86 KOG0310 Conserved WD40 repeat- 99.8 3.4E-19 7.4E-24 180.8 23.4 277 65-481 24-309 (487)
87 KOG0294 WD40 repeat-containing 99.8 3.6E-19 7.8E-24 171.3 22.3 222 226-483 49-283 (362)
88 KOG0973 Histone transcription 99.8 2.4E-19 5.3E-24 198.1 24.2 284 253-572 8-356 (942)
89 KOG0310 Conserved WD40 repeat- 99.8 3.3E-19 7.1E-24 181.0 22.1 276 255-574 25-312 (487)
90 KOG0640 mRNA cleavage stimulat 99.8 9.8E-20 2.1E-24 174.4 16.2 276 254-570 109-425 (430)
91 PTZ00420 coronin; Provisional 99.8 1.8E-18 3.9E-23 189.8 28.2 224 273-571 49-293 (568)
92 KOG0639 Transducin-like enhanc 99.8 2.5E-19 5.4E-24 181.4 19.5 230 204-480 461-703 (705)
93 KOG0308 Conserved WD40 repeat- 99.8 1.8E-19 4E-24 188.0 18.9 222 228-482 35-286 (735)
94 KOG0305 Anaphase promoting com 99.8 5.9E-19 1.3E-23 186.0 21.6 264 262-571 183-461 (484)
95 KOG1274 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 186.5 26.5 208 66-342 12-223 (933)
96 KOG0289 mRNA splicing factor [ 99.8 1.7E-18 3.8E-23 172.9 23.4 229 228-488 229-469 (506)
97 KOG0282 mRNA splicing factor [ 99.8 7.3E-20 1.6E-24 185.3 13.6 274 128-479 210-503 (503)
98 KOG0294 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 166.7 22.3 240 254-575 40-285 (362)
99 PTZ00421 coronin; Provisional 99.8 9.9E-19 2.2E-23 190.9 23.5 217 205-463 72-314 (493)
100 KOG1063 RNA polymerase II elon 99.8 2E-17 4.4E-22 174.1 31.7 451 31-571 25-602 (764)
101 KOG0641 WD40 repeat protein [G 99.8 2.8E-17 6.1E-22 150.9 28.5 288 257-570 32-348 (350)
102 KOG0647 mRNA export protein (c 99.8 2.2E-18 4.8E-23 165.1 21.8 234 257-529 27-281 (347)
103 KOG0299 U3 snoRNP-associated p 99.8 3.3E-18 7.1E-23 172.5 21.7 266 221-513 145-444 (479)
104 KOG1539 WD repeat protein [Gen 99.8 6.5E-17 1.4E-21 173.6 32.8 383 33-482 216-649 (910)
105 KOG2106 Uncharacterized conser 99.8 1.9E-15 4E-20 153.9 39.2 345 22-479 157-519 (626)
106 KOG1446 Histone H3 (Lys4) meth 99.8 1.9E-16 4E-21 153.4 30.2 274 20-384 15-306 (311)
107 KOG0300 WD40 repeat-containing 99.8 6.5E-18 1.4E-22 162.2 19.8 264 204-510 144-458 (481)
108 KOG0772 Uncharacterized conser 99.8 7.5E-18 1.6E-22 171.6 20.4 286 254-569 164-485 (641)
109 KOG0289 mRNA splicing factor [ 99.8 1.2E-17 2.6E-22 167.0 20.8 269 259-570 221-505 (506)
110 KOG1332 Vesicle coat complex C 99.8 4.2E-18 9.2E-23 158.5 16.3 249 254-574 8-289 (299)
111 KOG2919 Guanine nucleotide-bin 99.8 1.5E-17 3.2E-22 160.6 20.5 217 227-472 120-360 (406)
112 KOG0278 Serine/threonine kinas 99.8 6.7E-19 1.5E-23 164.1 10.7 279 203-572 9-298 (334)
113 KOG0288 WD40 repeat protein Ti 99.8 1.7E-18 3.6E-23 172.2 12.8 261 138-478 183-458 (459)
114 KOG0299 U3 snoRNP-associated p 99.8 4.9E-17 1.1E-21 164.1 22.1 282 254-570 139-453 (479)
115 KOG1332 Vesicle coat complex C 99.8 1.7E-17 3.8E-22 154.4 17.4 236 229-490 22-296 (299)
116 KOG1273 WD40 repeat protein [G 99.8 1.5E-16 3.3E-21 153.1 23.7 243 255-572 22-279 (405)
117 KOG0301 Phospholipase A2-activ 99.8 2.6E-17 5.6E-22 173.5 19.8 246 228-529 23-288 (745)
118 KOG1274 WD40 repeat protein [G 99.8 4.1E-15 8.9E-20 161.7 37.3 263 22-362 16-282 (933)
119 KOG0301 Phospholipase A2-activ 99.8 3.8E-17 8.2E-22 172.2 21.0 213 228-485 69-292 (745)
120 KOG0308 Conserved WD40 repeat- 99.8 6.4E-18 1.4E-22 176.6 15.1 207 211-422 66-287 (735)
121 KOG0264 Nucleosome remodeling 99.8 2E-16 4.4E-21 159.8 25.3 177 232-420 192-404 (422)
122 KOG0300 WD40 repeat-containing 99.8 2E-17 4.4E-22 158.9 17.0 235 253-529 144-428 (481)
123 KOG0269 WD40 repeat-containing 99.8 1.4E-17 3E-22 177.4 17.5 182 229-423 145-343 (839)
124 KOG0268 Sof1-like rRNA process 99.7 1.3E-17 2.8E-22 163.3 13.5 270 69-482 68-346 (433)
125 KOG0268 Sof1-like rRNA process 99.7 2.4E-17 5.2E-22 161.4 15.2 250 254-529 63-345 (433)
126 KOG0639 Transducin-like enhanc 99.7 2.5E-17 5.4E-22 167.1 15.5 268 21-373 421-693 (705)
127 KOG2055 WD40 repeat protein [G 99.7 5.2E-16 1.1E-20 156.6 24.1 224 226-480 265-511 (514)
128 KOG0647 mRNA export protein (c 99.7 5.1E-16 1.1E-20 149.0 22.0 256 225-510 34-309 (347)
129 KOG0646 WD40 repeat protein [G 99.7 5.7E-17 1.2E-21 163.9 15.9 264 32-361 51-330 (476)
130 KOG0267 Microtubule severing p 99.7 5.8E-18 1.2E-22 178.9 8.6 233 240-512 14-254 (825)
131 KOG0267 Microtubule severing p 99.7 4.1E-18 8.8E-23 180.0 7.4 214 227-474 37-260 (825)
132 KOG4283 Transcription-coupled 99.7 1.6E-15 3.5E-20 144.8 23.1 222 255-484 41-279 (397)
133 KOG0269 WD40 repeat-containing 99.7 1.7E-16 3.6E-21 169.2 16.1 197 262-529 93-296 (839)
134 KOG2055 WD40 repeat protein [G 99.7 1.4E-15 3E-20 153.6 20.7 268 20-372 214-500 (514)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.2E-14 4.8E-19 148.9 29.4 263 230-529 1-279 (300)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 2.4E-14 5.1E-19 148.7 29.5 224 224-484 36-282 (300)
137 KOG1036 Mitotic spindle checkp 99.7 6.2E-15 1.3E-19 142.2 22.8 264 22-372 16-292 (323)
138 KOG0646 WD40 repeat protein [G 99.7 2.5E-15 5.3E-20 152.2 20.7 228 238-484 59-310 (476)
139 KOG1036 Mitotic spindle checkp 99.7 2E-14 4.2E-19 138.8 24.0 271 68-472 14-294 (323)
140 KOG1034 Transcriptional repres 99.7 1.1E-14 2.4E-19 141.4 21.8 220 232-481 107-383 (385)
141 KOG0264 Nucleosome remodeling 99.7 3.4E-15 7.3E-20 151.0 18.6 243 254-529 121-404 (422)
142 KOG4283 Transcription-coupled 99.7 8.9E-15 1.9E-19 139.8 20.3 292 131-480 42-364 (397)
143 KOG1445 Tumor-specific antigen 99.7 2.2E-15 4.8E-20 156.8 16.5 234 267-573 590-844 (1012)
144 KOG0303 Actin-binding protein 99.6 5.5E-15 1.2E-19 146.5 17.9 212 300-572 74-295 (472)
145 KOG1273 WD40 repeat protein [G 99.6 6.2E-14 1.3E-18 135.3 23.1 151 261-424 158-326 (405)
146 KOG2445 Nuclear pore complex c 99.6 2.4E-14 5.3E-19 137.8 19.6 247 224-481 19-318 (361)
147 KOG2445 Nuclear pore complex c 99.6 1.1E-13 2.4E-18 133.4 20.6 268 23-336 17-317 (361)
148 KOG4328 WD40 protein [Function 99.6 6.8E-14 1.5E-18 141.4 20.0 278 66-417 185-492 (498)
149 KOG4378 Nuclear protein COP1 [ 99.6 5.8E-14 1.3E-18 142.8 18.2 213 257-505 80-302 (673)
150 KOG1538 Uncharacterized conser 99.6 2.4E-12 5.1E-17 135.2 30.2 261 22-379 15-291 (1081)
151 KOG1538 Uncharacterized conser 99.6 3.7E-14 8E-19 148.5 16.8 266 259-572 14-294 (1081)
152 KOG4328 WD40 protein [Function 99.6 8.2E-14 1.8E-18 140.8 17.7 276 256-571 185-493 (498)
153 KOG1009 Chromatin assembly com 99.6 1.1E-12 2.5E-17 130.9 25.4 134 226-372 21-183 (434)
154 KOG0270 WD40 repeat-containing 99.6 8.3E-14 1.8E-18 140.4 15.8 221 229-483 191-451 (463)
155 KOG0270 WD40 repeat-containing 99.6 7.4E-14 1.6E-18 140.8 15.3 230 267-529 191-449 (463)
156 KOG0302 Ribosome Assembly prot 99.5 1.2E-13 2.7E-18 136.3 16.1 119 203-338 252-379 (440)
157 KOG2919 Guanine nucleotide-bin 99.5 2.8E-13 6E-18 131.3 17.4 255 224-512 55-356 (406)
158 KOG0771 Prolactin regulatory e 99.5 3.6E-13 7.8E-18 135.5 17.3 206 20-338 145-355 (398)
159 KOG0771 Prolactin regulatory e 99.5 2.2E-13 4.7E-18 137.0 15.4 203 260-528 148-353 (398)
160 COG2319 FOG: WD40 repeat [Gene 99.5 1.9E-10 4.1E-15 123.9 40.0 354 21-482 67-443 (466)
161 KOG0642 Cell-cycle nuclear pro 99.5 1.2E-13 2.7E-18 143.1 14.0 250 254-574 291-564 (577)
162 KOG0650 WD40 repeat nucleolar 99.5 5.2E-13 1.1E-17 139.0 18.2 317 21-478 402-732 (733)
163 KOG0650 WD40 repeat nucleolar 99.5 1.5E-12 3.3E-17 135.5 21.0 286 254-602 397-716 (733)
164 KOG0302 Ribosome Assembly prot 99.5 5E-13 1.1E-17 132.1 16.4 200 254-483 148-380 (440)
165 PRK11028 6-phosphogluconolacto 99.5 5.5E-11 1.2E-15 125.7 32.9 233 37-338 9-259 (330)
166 KOG1524 WD40 repeat-containing 99.5 4.8E-12 1E-16 130.1 23.2 125 225-361 111-238 (737)
167 KOG0321 WD40 repeat-containing 99.5 8.4E-13 1.8E-17 138.5 17.7 239 253-529 96-391 (720)
168 KOG1963 WD40 repeat protein [G 99.5 3.1E-11 6.7E-16 131.8 30.0 338 23-483 164-540 (792)
169 KOG0307 Vesicle coat complex C 99.5 1.7E-13 3.7E-18 152.9 12.1 225 270-531 82-329 (1049)
170 KOG0649 WD40 repeat protein [G 99.5 6.9E-12 1.5E-16 117.2 20.5 289 67-414 10-310 (325)
171 KOG1034 Transcriptional repres 99.5 1.9E-12 4E-17 126.1 17.4 239 255-512 87-371 (385)
172 KOG0321 WD40 repeat-containing 99.5 1.4E-12 3.1E-17 136.8 17.8 248 203-483 95-393 (720)
173 KOG1963 WD40 repeat protein [G 99.5 2E-10 4.4E-15 125.5 33.8 285 259-572 208-539 (792)
174 COG2319 FOG: WD40 repeat [Gene 99.5 1.7E-10 3.7E-15 124.2 33.4 304 226-572 73-401 (466)
175 KOG0307 Vesicle coat complex C 99.5 1.6E-13 3.5E-18 153.1 9.7 228 232-487 82-333 (1049)
176 KOG0644 Uncharacterized conser 99.4 1.6E-13 3.5E-18 147.4 9.1 226 223-481 195-468 (1113)
177 PRK11028 6-phosphogluconolacto 99.4 1.9E-10 4.1E-15 121.6 31.8 297 232-607 4-328 (330)
178 KOG0303 Actin-binding protein 99.4 4.3E-12 9.3E-17 126.2 17.2 196 254-484 78-297 (472)
179 PRK01742 tolB translocation pr 99.4 1.1E-11 2.4E-16 135.5 22.2 233 40-361 184-426 (429)
180 KOG4378 Nuclear protein COP1 [ 99.4 1.2E-11 2.5E-16 126.2 19.1 257 274-572 8-281 (673)
181 KOG1009 Chromatin assembly com 99.4 8.7E-11 1.9E-15 117.6 23.8 183 67-341 13-199 (434)
182 KOG0322 G-protein beta subunit 99.4 7.1E-12 1.5E-16 118.6 14.7 268 21-337 16-323 (323)
183 KOG1007 WD repeat protein TSSC 99.4 5.6E-11 1.2E-15 113.9 20.7 216 256-479 123-358 (370)
184 KOG2110 Uncharacterized conser 99.4 2.9E-10 6.3E-15 112.8 26.3 128 242-382 108-249 (391)
185 KOG1517 Guanine nucleotide bin 99.4 2.3E-11 5E-16 134.3 20.4 298 71-484 1068-1384(1387)
186 KOG2394 WD40 protein DMR-N9 [G 99.4 1.8E-11 3.8E-16 126.4 17.4 95 258-362 291-386 (636)
187 KOG1188 WD40 repeat protein [G 99.4 1.5E-11 3.2E-16 120.6 15.6 227 229-481 83-346 (376)
188 KOG1240 Protein kinase contain 99.4 3.5E-10 7.5E-15 127.1 27.3 220 70-347 1051-1283(1431)
189 KOG2139 WD40 repeat protein [G 99.3 9.9E-11 2.2E-15 115.5 20.4 187 262-482 104-310 (445)
190 KOG1524 WD40 repeat-containing 99.3 2.4E-11 5.2E-16 125.1 16.6 137 269-419 76-215 (737)
191 KOG1188 WD40 repeat protein [G 99.3 2.1E-11 4.5E-16 119.6 14.6 270 269-571 41-346 (376)
192 KOG0649 WD40 repeat protein [G 99.3 4.9E-10 1.1E-14 105.0 21.2 238 262-570 16-273 (325)
193 KOG4227 WD40 repeat protein [G 99.3 1.8E-10 3.9E-15 114.3 19.3 286 254-569 53-385 (609)
194 KOG0642 Cell-cycle nuclear pro 99.3 1.9E-11 4.2E-16 127.0 12.9 229 224-484 300-564 (577)
195 KOG2111 Uncharacterized conser 99.3 1.3E-09 2.9E-14 106.2 24.3 233 25-340 11-259 (346)
196 PRK01742 tolB translocation pr 99.3 2.2E-10 4.8E-15 125.2 20.0 207 223-463 208-426 (429)
197 KOG1587 Cytoplasmic dynein int 99.3 3.4E-10 7.4E-15 123.5 20.9 265 18-339 241-518 (555)
198 KOG2110 Uncharacterized conser 99.3 6.9E-10 1.5E-14 110.2 20.4 230 23-339 9-250 (391)
199 KOG1007 WD repeat protein TSSC 99.2 6E-10 1.3E-14 106.9 18.4 257 20-338 64-362 (370)
200 KOG4497 Uncharacterized conser 99.2 1.3E-08 2.7E-13 99.6 27.3 360 21-512 10-420 (447)
201 KOG1310 WD40 repeat protein [G 99.2 6.7E-11 1.4E-15 122.2 12.2 163 306-480 49-230 (758)
202 KOG1517 Guanine nucleotide bin 99.2 7.2E-10 1.6E-14 122.7 20.5 282 261-571 1069-1381(1387)
203 KOG1523 Actin-related protein 99.2 5.7E-10 1.2E-14 108.7 17.1 236 257-514 11-268 (361)
204 KOG0322 G-protein beta subunit 99.2 3E-10 6.4E-15 107.8 14.5 153 269-480 166-322 (323)
205 PF08662 eIF2A: Eukaryotic tra 99.2 1.7E-09 3.6E-14 104.3 19.7 111 210-341 61-183 (194)
206 PRK03629 tolB translocation pr 99.2 2.8E-09 6.2E-14 116.3 23.8 234 40-361 179-428 (429)
207 KOG4497 Uncharacterized conser 99.2 1E-09 2.3E-14 107.0 16.5 130 221-362 11-145 (447)
208 KOG4227 WD40 repeat protein [G 99.2 2.4E-09 5.2E-14 106.5 19.1 251 226-487 113-393 (609)
209 KOG0644 Uncharacterized conser 99.2 3.1E-11 6.7E-16 130.2 6.3 215 252-483 185-428 (1113)
210 KOG1445 Tumor-specific antigen 99.2 3.4E-10 7.3E-15 118.7 13.6 133 239-384 602-753 (1012)
211 PF04762 IKI3: IKI3 family; I 99.1 8.1E-07 1.8E-11 104.5 41.2 438 66-566 74-559 (928)
212 KOG1587 Cytoplasmic dynein int 99.1 3.7E-09 8E-14 115.5 19.5 240 221-483 245-518 (555)
213 KOG1240 Protein kinase contain 99.1 6.9E-09 1.5E-13 117.0 21.7 271 206-484 1036-1337(1431)
214 KOG0290 Conserved WD40 repeat- 99.1 9.3E-09 2E-13 99.0 19.3 233 269-514 60-355 (364)
215 KOG1523 Actin-related protein 99.1 5.7E-09 1.2E-13 101.9 16.7 233 226-488 18-286 (361)
216 PRK02889 tolB translocation pr 99.1 1.7E-08 3.8E-13 110.2 22.9 214 68-361 196-425 (427)
217 KOG1272 WD40-repeat-containing 99.1 3.4E-10 7.4E-15 115.1 8.6 260 257-563 130-401 (545)
218 PRK05137 tolB translocation pr 99.1 2.9E-08 6.4E-13 108.9 24.7 196 253-487 197-418 (435)
219 PF08662 eIF2A: Eukaryotic tra 99.1 8.9E-09 1.9E-13 99.3 18.1 98 257-373 59-162 (194)
220 KOG2139 WD40 repeat protein [G 99.0 4.5E-08 9.7E-13 97.1 21.9 170 254-474 193-367 (445)
221 PRK04922 tolB translocation pr 99.0 2.8E-08 6E-13 108.9 22.8 124 224-360 297-432 (433)
222 KOG0290 Conserved WD40 repeat- 99.0 2.6E-09 5.7E-14 102.7 11.9 209 64-339 93-320 (364)
223 KOG1272 WD40-repeat-containing 99.0 9.5E-10 2.1E-14 112.0 9.4 215 64-362 127-346 (545)
224 PF15492 Nbas_N: Neuroblastoma 99.0 7E-08 1.5E-12 93.7 21.8 73 25-100 3-76 (282)
225 KOG2394 WD40 protein DMR-N9 [G 99.0 8.6E-09 1.9E-13 106.9 15.0 140 257-401 220-382 (636)
226 KOG2321 WD40 repeat protein [G 99.0 8.3E-08 1.8E-12 100.4 22.2 152 258-415 176-338 (703)
227 PRK03629 tolB translocation pr 99.0 5E-08 1.1E-12 106.6 21.1 206 221-462 201-427 (429)
228 PF02239 Cytochrom_D1: Cytochr 99.0 6.5E-07 1.4E-11 95.1 28.6 293 222-544 40-359 (369)
229 PRK04922 tolB translocation pr 98.9 1.1E-07 2.4E-12 104.3 22.0 204 242-483 186-413 (433)
230 PRK02889 tolB translocation pr 98.9 1.2E-07 2.6E-12 103.6 22.0 172 224-409 201-389 (427)
231 TIGR02658 TTQ_MADH_Hv methylam 98.9 8.7E-07 1.9E-11 92.2 26.7 76 262-347 253-340 (352)
232 PRK05137 tolB translocation pr 98.9 3.3E-07 7.2E-12 100.6 24.5 217 278-574 182-413 (435)
233 KOG2111 Uncharacterized conser 98.9 2.3E-06 4.9E-11 84.0 25.5 229 260-528 9-255 (346)
234 KOG2315 Predicted translation 98.8 2.1E-06 4.5E-11 90.2 26.6 145 257-419 218-389 (566)
235 PF10282 Lactonase: Lactonase, 98.8 1.8E-05 3.8E-10 84.1 34.0 107 224-337 92-222 (345)
236 PRK04792 tolB translocation pr 98.8 8.2E-07 1.8E-11 97.5 23.9 124 224-360 311-446 (448)
237 KOG1310 WD40 repeat protein [G 98.8 4.8E-08 1E-12 101.5 12.7 118 203-338 45-179 (758)
238 KOG2321 WD40 repeat protein [G 98.8 6.9E-07 1.5E-11 93.7 20.1 276 255-571 49-343 (703)
239 KOG1354 Serine/threonine prote 98.7 4.4E-07 9.4E-12 89.6 16.9 257 68-348 26-313 (433)
240 TIGR02800 propeller_TolB tol-p 98.7 7.4E-07 1.6E-11 97.5 21.1 183 254-474 186-386 (417)
241 KOG1334 WD40 repeat protein [G 98.7 8E-08 1.7E-12 98.8 12.2 293 204-528 138-465 (559)
242 KOG1912 WD40 repeat protein [G 98.7 1.4E-05 3E-10 86.9 29.2 461 6-571 4-551 (1062)
243 PF10282 Lactonase: Lactonase, 98.7 9.1E-05 2E-09 78.6 35.7 289 40-388 13-331 (345)
244 KOG1354 Serine/threonine prote 98.7 1.9E-06 4.2E-11 85.2 20.2 288 21-339 27-361 (433)
245 KOG0974 WD-repeat protein WDR6 98.7 2.2E-07 4.7E-12 104.0 15.1 140 226-381 141-288 (967)
246 KOG4547 WD40 repeat-containing 98.7 7.1E-07 1.5E-11 94.3 18.1 123 267-401 69-192 (541)
247 PRK01029 tolB translocation pr 98.7 3.7E-06 8.1E-11 91.6 24.5 126 224-361 286-425 (428)
248 PF02239 Cytochrom_D1: Cytochr 98.7 2E-05 4.4E-10 83.8 29.3 260 269-570 6-301 (369)
249 KOG1334 WD40 repeat protein [G 98.7 2.8E-07 6.1E-12 94.9 14.3 286 20-385 143-470 (559)
250 KOG0974 WD-repeat protein WDR6 98.7 3.4E-07 7.3E-12 102.4 16.1 192 73-339 93-290 (967)
251 PF04762 IKI3: IKI3 family; I 98.7 7.2E-05 1.6E-09 88.4 36.4 296 207-573 74-458 (928)
252 KOG3881 Uncharacterized conser 98.7 9.1E-07 2E-11 89.0 17.5 143 232-387 163-326 (412)
253 TIGR02800 propeller_TolB tol-p 98.6 6.7E-06 1.5E-10 89.9 24.8 208 279-529 171-397 (417)
254 KOG4547 WD40 repeat-containing 98.6 7E-07 1.5E-11 94.4 15.1 95 255-361 100-195 (541)
255 COG5354 Uncharacterized protei 98.6 2.7E-05 5.9E-10 81.1 25.9 169 260-474 226-421 (561)
256 PRK01029 tolB translocation pr 98.6 8E-06 1.7E-10 89.0 22.7 130 224-362 190-338 (428)
257 PRK00178 tolB translocation pr 98.6 1.5E-05 3.2E-10 87.6 24.4 181 255-473 196-394 (430)
258 COG2706 3-carboxymuconate cycl 98.6 0.00014 3.1E-09 73.2 28.5 249 256-529 39-321 (346)
259 KOG2315 Predicted translation 98.5 2.3E-05 5E-10 82.6 23.2 284 261-571 39-390 (566)
260 COG2706 3-carboxymuconate cycl 98.5 0.00074 1.6E-08 68.2 32.6 251 33-337 6-274 (346)
261 KOG2041 WD40 repeat protein [G 98.5 0.0001 2.2E-09 79.6 27.9 221 64-336 11-246 (1189)
262 PF00400 WD40: WD domain, G-be 98.5 3.6E-07 7.8E-12 62.9 5.7 38 290-335 2-39 (39)
263 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00073 1.6E-08 70.6 31.9 277 40-389 27-338 (352)
264 PRK04792 tolB translocation pr 98.4 1.5E-05 3.2E-10 87.6 20.4 148 223-386 222-387 (448)
265 COG4946 Uncharacterized protei 98.4 0.00044 9.4E-09 71.6 28.5 125 227-362 368-500 (668)
266 KOG3881 Uncharacterized conser 98.4 7.7E-06 1.7E-10 82.4 15.5 109 225-342 209-325 (412)
267 KOG1409 Uncharacterized conser 98.4 2.6E-05 5.5E-10 77.5 18.8 224 226-484 32-273 (404)
268 PRK00178 tolB translocation pr 98.4 2.3E-05 5E-10 86.0 20.9 149 223-387 203-369 (430)
269 KOG2314 Translation initiation 98.4 0.00034 7.4E-09 73.8 27.4 303 224-561 216-557 (698)
270 COG4946 Uncharacterized protei 98.4 0.00056 1.2E-08 70.8 28.4 98 254-362 356-455 (668)
271 PF15492 Nbas_N: Neuroblastoma 98.3 0.00023 4.9E-09 69.7 23.1 231 224-487 3-269 (282)
272 KOG1409 Uncharacterized conser 98.3 9.3E-05 2E-09 73.6 20.5 240 69-383 26-272 (404)
273 KOG4532 WD40-like repeat conta 98.3 6.2E-05 1.3E-09 72.4 18.3 199 71-340 71-285 (344)
274 KOG0309 Conserved WD40 repeat- 98.3 1.7E-06 3.6E-11 93.2 8.3 198 206-420 112-339 (1081)
275 KOG2314 Translation initiation 98.3 0.00037 8E-09 73.5 24.8 306 21-374 212-557 (698)
276 PRK04043 tolB translocation pr 98.3 0.00014 2.9E-09 79.0 22.2 104 225-340 283-403 (419)
277 KOG1912 WD40 repeat protein [G 98.2 0.00059 1.3E-08 74.7 24.1 117 452-572 521-657 (1062)
278 KOG3914 WD repeat protein WDR4 98.2 3.5E-05 7.6E-10 78.2 13.9 85 253-346 147-232 (390)
279 KOG1064 RAVE (regulator of V-A 98.1 1.2E-05 2.6E-10 94.7 10.6 139 226-390 2259-2407(2439)
280 KOG4190 Uncharacterized conser 98.1 7.7E-06 1.7E-10 85.3 8.2 166 254-484 732-909 (1034)
281 TIGR03300 assembly_YfgL outer 98.1 0.0012 2.5E-08 71.2 25.0 248 267-568 104-376 (377)
282 PF00400 WD40: WD domain, G-be 98.1 9.2E-06 2E-10 55.7 5.4 36 444-479 3-39 (39)
283 PLN02919 haloacid dehalogenase 98.1 0.0019 4.2E-08 78.0 28.6 116 224-341 745-892 (1057)
284 KOG4532 WD40-like repeat conta 98.1 0.00027 5.9E-09 68.1 16.7 198 233-488 131-338 (344)
285 KOG1064 RAVE (regulator of V-A 98.0 2.2E-05 4.8E-10 92.6 11.1 178 259-482 2211-2399(2439)
286 KOG0280 Uncharacterized conser 98.0 0.00024 5.1E-09 69.4 15.8 83 248-338 156-242 (339)
287 PRK04043 tolB translocation pr 98.0 0.00076 1.6E-08 73.2 21.5 110 260-385 191-313 (419)
288 KOG2041 WD40 repeat protein [G 98.0 0.00046 9.9E-09 74.7 18.9 147 206-362 12-168 (1189)
289 PF04841 Vps16_N: Vps16, N-ter 98.0 0.0038 8.3E-08 67.6 26.0 247 22-339 31-289 (410)
290 PLN02919 haloacid dehalogenase 97.9 0.0016 3.5E-08 78.6 24.8 248 224-485 573-892 (1057)
291 PF06433 Me-amine-dh_H: Methyl 97.9 0.0051 1.1E-07 63.0 24.3 260 25-350 41-333 (342)
292 KOG4714 Nucleoporin [Nuclear s 97.9 0.00012 2.5E-09 70.3 11.6 152 306-482 88-255 (319)
293 KOG0280 Uncharacterized conser 97.9 0.00019 4.1E-09 70.1 12.9 201 71-339 73-286 (339)
294 TIGR03300 assembly_YfgL outer 97.9 0.0038 8.2E-08 67.2 24.0 146 269-424 191-342 (377)
295 KOG3914 WD repeat protein WDR4 97.8 9.2E-05 2E-09 75.2 10.2 79 306-389 150-231 (390)
296 COG5354 Uncharacterized protei 97.8 0.005 1.1E-07 64.7 22.7 308 224-571 38-395 (561)
297 KOG4714 Nucleoporin [Nuclear s 97.8 0.0004 8.7E-09 66.7 12.8 74 259-340 181-257 (319)
298 PF11768 DUF3312: Protein of u 97.7 0.00014 3E-09 78.0 9.9 74 257-341 260-333 (545)
299 COG5170 CDC55 Serine/threonine 97.7 0.00016 3.6E-09 70.8 9.3 265 64-348 23-321 (460)
300 KOG4640 Anaphase-promoting com 97.7 0.00016 3.5E-09 77.6 8.9 75 260-344 24-99 (665)
301 KOG2066 Vacuolar assembly/sort 97.6 0.0017 3.7E-08 71.7 16.8 184 260-528 43-232 (846)
302 KOG2114 Vacuolar assembly/sort 97.6 0.0082 1.8E-07 67.0 21.6 137 258-405 126-268 (933)
303 KOG1645 RING-finger-containing 97.6 0.0043 9.3E-08 63.4 17.1 77 253-339 189-268 (463)
304 KOG0309 Conserved WD40 repeat- 97.6 0.00059 1.3E-08 74.3 11.6 269 224-529 30-339 (1081)
305 COG5170 CDC55 Serine/threonine 97.6 0.0033 7.2E-08 61.9 15.7 272 21-336 28-366 (460)
306 PF08450 SGL: SMP-30/Gluconola 97.6 0.015 3.2E-07 58.5 21.5 128 224-358 91-232 (246)
307 KOG3621 WD40 repeat-containing 97.6 0.004 8.7E-08 68.1 17.8 112 224-338 39-155 (726)
308 PF07433 DUF1513: Protein of u 97.6 0.014 2.9E-07 59.2 20.5 93 262-362 10-110 (305)
309 KOG1920 IkappaB kinase complex 97.3 0.05 1.1E-06 63.3 23.9 235 68-340 69-325 (1265)
310 KOG2695 WD40 repeat protein [G 97.3 0.0008 1.7E-08 67.2 8.5 116 262-390 258-385 (425)
311 PF04053 Coatomer_WDAD: Coatom 97.3 0.068 1.5E-06 58.1 23.6 214 259-571 35-262 (443)
312 KOG1920 IkappaB kinase complex 97.3 0.14 3.1E-06 59.8 26.7 304 257-603 69-401 (1265)
313 KOG4190 Uncharacterized conser 97.2 0.0039 8.4E-08 65.7 12.2 173 129-346 732-915 (1034)
314 PF04841 Vps16_N: Vps16, N-ter 97.2 0.35 7.6E-06 52.4 27.8 68 262-340 34-112 (410)
315 PRK11138 outer membrane biogen 97.1 0.15 3.2E-06 55.2 24.3 67 268-347 120-188 (394)
316 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.25 5.4E-06 52.6 25.2 76 20-97 43-131 (353)
317 KOG4640 Anaphase-promoting com 97.1 0.0024 5.2E-08 68.9 9.4 93 210-317 22-115 (665)
318 smart00320 WD40 WD40 repeats. 97.1 0.0016 3.4E-08 43.0 5.5 30 306-335 11-40 (40)
319 KOG2695 WD40 repeat protein [G 97.1 0.0015 3.2E-08 65.3 7.3 114 225-347 259-386 (425)
320 KOG0882 Cyclophilin-related pe 97.0 0.0019 4E-08 66.8 7.8 212 256-486 8-236 (558)
321 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.088 1.9E-06 56.0 19.8 265 277-573 22-315 (353)
322 PRK11138 outer membrane biogen 96.9 0.25 5.4E-06 53.5 23.3 75 269-345 206-282 (394)
323 PF07433 DUF1513: Protein of u 96.8 0.31 6.7E-06 49.6 21.5 54 262-327 222-276 (305)
324 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.033 7.2E-07 47.3 11.9 94 226-332 10-109 (111)
325 PF08450 SGL: SMP-30/Gluconola 96.8 0.72 1.6E-05 46.2 24.3 128 226-362 7-145 (246)
326 KOG3617 WD40 and TPR repeat-co 96.7 0.01 2.2E-07 65.9 10.5 104 262-381 21-131 (1416)
327 PF13360 PQQ_2: PQQ-like domai 96.6 0.12 2.6E-06 51.3 17.1 112 266-391 34-150 (238)
328 KOG1275 PAB-dependent poly(A) 96.5 0.035 7.6E-07 62.6 13.2 175 267-479 146-340 (1118)
329 PF11768 DUF3312: Protein of u 96.5 0.023 5E-07 61.4 11.5 73 21-102 261-334 (545)
330 COG0823 TolB Periplasmic compo 96.5 0.075 1.6E-06 57.5 15.7 110 26-163 199-317 (425)
331 KOG2114 Vacuolar assembly/sort 96.5 0.23 5.1E-06 56.0 19.2 121 210-346 127-252 (933)
332 PF08596 Lgl_C: Lethal giant l 96.3 0.89 1.9E-05 48.8 22.4 236 70-347 4-300 (395)
333 KOG1897 Damage-specific DNA bi 96.2 3.3 7.3E-05 47.9 36.4 53 521-574 807-859 (1096)
334 KOG1832 HIV-1 Vpr-binding prot 96.2 0.0037 8.1E-08 69.6 3.4 179 258-482 1103-1292(1516)
335 PF06433 Me-amine-dh_H: Methyl 96.2 1 2.2E-05 46.5 20.6 165 216-390 143-329 (342)
336 COG3490 Uncharacterized protei 96.1 0.49 1.1E-05 46.9 17.0 213 263-529 120-348 (366)
337 KOG2066 Vacuolar assembly/sort 96.1 0.041 9E-07 61.3 10.9 148 135-347 42-197 (846)
338 KOG1832 HIV-1 Vpr-binding prot 96.1 0.0066 1.4E-07 67.7 4.8 147 306-483 1100-1257(1516)
339 smart00320 WD40 WD40 repeats. 96.0 0.013 2.8E-07 38.3 4.4 34 446-479 6-40 (40)
340 KOG4649 PQQ (pyrrolo-quinoline 96.0 1.7 3.8E-05 42.5 23.5 83 267-360 62-145 (354)
341 PF13360 PQQ_2: PQQ-like domai 96.0 0.82 1.8E-05 45.2 19.4 212 277-529 2-230 (238)
342 KOG3621 WD40 repeat-containing 95.8 0.74 1.6E-05 51.0 18.5 119 20-161 34-155 (726)
343 KOG2079 Vacuolar assembly/sort 95.7 0.028 6.1E-07 64.5 7.7 74 267-348 98-171 (1206)
344 KOG1008 Uncharacterized conser 95.7 0.0049 1.1E-07 66.6 1.7 204 258-529 58-275 (783)
345 KOG0882 Cyclophilin-related pe 95.6 0.18 3.8E-06 52.7 12.5 126 222-347 100-241 (558)
346 KOG1275 PAB-dependent poly(A) 95.6 0.32 6.8E-06 55.3 15.2 92 239-336 245-341 (1118)
347 PRK02888 nitrous-oxide reducta 95.6 0.42 9E-06 53.3 16.2 103 224-327 326-451 (635)
348 PF12894 Apc4_WD40: Anaphase-p 94.8 0.079 1.7E-06 37.7 5.2 33 307-339 11-43 (47)
349 PF08596 Lgl_C: Lethal giant l 94.8 7.1 0.00015 42.0 26.9 83 261-344 6-122 (395)
350 PRK02888 nitrous-oxide reducta 94.8 0.55 1.2E-05 52.4 14.1 143 315-472 284-451 (635)
351 KOG1645 RING-finger-containing 94.8 0.46 1E-05 49.1 12.4 56 304-361 190-246 (463)
352 KOG3617 WD40 and TPR repeat-co 94.8 0.069 1.5E-06 59.7 6.9 69 260-337 63-131 (1416)
353 PF12894 Apc4_WD40: Anaphase-p 94.7 0.059 1.3E-06 38.3 4.2 29 69-97 13-41 (47)
354 PF06977 SdiA-regulated: SdiA- 94.3 6.4 0.00014 39.3 19.8 219 21-282 23-246 (248)
355 PF15390 DUF4613: Domain of un 94.3 5.3 0.00012 43.9 19.4 59 262-327 344-404 (671)
356 PRK13616 lipoprotein LpqB; Pro 94.3 2.4 5.2E-05 48.1 18.1 106 223-333 354-472 (591)
357 PF10168 Nup88: Nuclear pore c 94.2 1.7 3.7E-05 50.3 16.9 77 22-98 87-180 (717)
358 PF14783 BBS2_Mid: Ciliary BBS 94.0 0.71 1.5E-05 39.4 9.9 65 259-336 4-70 (111)
359 PF02897 Peptidase_S9_N: Proly 93.9 11 0.00025 40.8 22.6 113 455-573 229-357 (414)
360 PF06977 SdiA-regulated: SdiA- 93.9 7.5 0.00016 38.8 21.4 123 211-338 24-148 (248)
361 COG3391 Uncharacterized conser 93.9 9.7 0.00021 40.9 21.4 107 225-342 80-195 (381)
362 KOG4441 Proteins containing BT 93.9 2.2 4.8E-05 48.4 16.9 70 459-529 471-546 (571)
363 COG0823 TolB Periplasmic compo 93.7 0.56 1.2E-05 50.9 11.4 130 223-362 197-337 (425)
364 PF10647 Gmad1: Lipoprotein Lp 93.7 5.9 0.00013 39.8 18.0 95 258-362 25-123 (253)
365 PF04053 Coatomer_WDAD: Coatom 93.2 6.7 0.00014 42.9 18.5 85 259-362 71-156 (443)
366 PF11635 Med16: Mediator compl 92.1 12 0.00026 44.1 20.1 72 260-332 263-345 (753)
367 KOG2444 WD40 repeat protein [G 91.9 0.51 1.1E-05 45.3 6.8 99 230-337 70-177 (238)
368 PF00780 CNH: CNH domain; Int 91.8 16 0.00035 37.0 24.6 63 266-340 5-67 (275)
369 KOG4649 PQQ (pyrrolo-quinoline 91.7 15 0.00031 36.4 26.5 62 224-286 99-165 (354)
370 COG3490 Uncharacterized protei 91.4 2 4.4E-05 42.7 10.5 54 26-86 120-180 (366)
371 PRK13616 lipoprotein LpqB; Pro 90.9 8.9 0.00019 43.6 16.8 88 261-362 354-459 (591)
372 PF08553 VID27: VID27 cytoplas 90.9 2 4.4E-05 49.8 11.7 94 232-336 544-646 (794)
373 KOG2079 Vacuolar assembly/sort 90.6 0.99 2.2E-05 52.5 8.7 71 258-336 132-202 (1206)
374 KOG1898 Splicing factor 3b, su 90.0 47 0.001 39.3 29.8 77 19-100 537-621 (1205)
375 PF02897 Peptidase_S9_N: Proly 90.0 32 0.0007 37.3 30.5 57 262-329 129-191 (414)
376 KOG3630 Nuclear pore complex, 89.5 4.2 9.1E-05 47.9 12.4 75 454-529 200-282 (1405)
377 cd00216 PQQ_DH Dehydrogenases 88.9 43 0.00094 37.3 26.9 72 269-347 111-193 (488)
378 PF14870 PSII_BNR: Photosynthe 88.1 34 0.00075 35.3 17.1 86 266-362 113-198 (302)
379 COG3386 Gluconolactonase [Carb 87.3 39 0.00085 35.0 17.8 87 232-325 39-128 (307)
380 COG3204 Uncharacterized protei 87.2 36 0.00078 34.5 19.9 174 211-401 88-262 (316)
381 PF07995 GSDH: Glucose / Sorbo 87.1 43 0.00093 35.2 21.9 25 452-476 305-329 (331)
382 KOG2280 Vacuolar assembly/sort 86.7 40 0.00086 38.5 17.3 56 256-319 216-271 (829)
383 KOG2444 WD40 repeat protein [G 86.5 1.6 3.4E-05 42.1 5.8 73 268-348 70-143 (238)
384 PF10313 DUF2415: Uncharacteri 86.4 2 4.3E-05 29.7 4.7 30 453-482 1-34 (43)
385 PF10647 Gmad1: Lipoprotein Lp 86.1 6 0.00013 39.8 10.3 60 262-327 71-131 (253)
386 PF08553 VID27: VID27 cytoplas 85.9 7.7 0.00017 45.2 12.0 117 240-362 504-630 (794)
387 PF12657 TFIIIC_delta: Transcr 85.9 3 6.5E-05 39.2 7.5 30 69-98 87-122 (173)
388 PF10168 Nup88: Nuclear pore c 85.8 15 0.00033 42.7 14.4 80 260-339 87-181 (717)
389 PF03178 CPSF_A: CPSF A subuni 85.8 48 0.001 34.5 25.2 183 79-334 42-262 (321)
390 PRK10115 protease 2; Provision 85.6 80 0.0017 36.9 21.4 56 262-328 132-192 (686)
391 PF14655 RAB3GAP2_N: Rab3 GTPa 85.3 2.1 4.5E-05 46.0 6.8 76 22-97 4-97 (415)
392 PF00780 CNH: CNH domain; Int 84.9 46 0.001 33.6 24.7 61 30-99 6-66 (275)
393 PF10313 DUF2415: Uncharacteri 84.4 2.7 6E-05 29.1 4.6 31 308-338 1-34 (43)
394 PF15390 DUF4613: Domain of un 84.1 28 0.00062 38.5 14.4 104 32-163 74-187 (671)
395 PF12234 Rav1p_C: RAVE protein 83.7 13 0.00029 42.0 12.4 84 5-96 17-103 (631)
396 COG3391 Uncharacterized conser 83.5 68 0.0015 34.4 22.5 115 224-347 165-293 (381)
397 COG3386 Gluconolactonase [Carb 83.3 18 0.0004 37.4 12.5 90 262-358 168-262 (307)
398 PF03178 CPSF_A: CPSF A subuni 83.2 21 0.00046 37.2 13.4 101 464-572 42-158 (321)
399 KOG1916 Nuclear protein, conta 83.1 1.3 2.7E-05 50.6 4.0 75 137-248 190-265 (1283)
400 PF07995 GSDH: Glucose / Sorbo 82.7 67 0.0015 33.7 31.2 60 267-331 270-329 (331)
401 PF14761 HPS3_N: Hermansky-Pud 82.3 26 0.00057 33.8 12.0 61 27-94 25-92 (215)
402 PF12341 DUF3639: Protein of u 82.0 2.2 4.7E-05 26.3 3.0 24 70-95 4-27 (27)
403 PF11715 Nup160: Nucleoporin N 81.9 5.9 0.00013 44.9 9.2 81 266-346 156-257 (547)
404 KOG2280 Vacuolar assembly/sort 81.8 82 0.0018 36.1 17.1 52 278-340 64-115 (829)
405 KOG2377 Uncharacterized conser 81.3 22 0.00048 38.0 11.9 71 25-101 28-100 (657)
406 PF07676 PD40: WD40-like Beta 81.1 2.4 5.3E-05 28.5 3.5 28 67-94 8-38 (39)
407 TIGR03074 PQQ_membr_DH membran 81.0 1.2E+02 0.0027 35.7 21.9 78 268-346 260-353 (764)
408 PF14781 BBS2_N: Ciliary BBSom 80.5 42 0.0009 29.9 12.0 115 263-389 5-133 (136)
409 KOG2377 Uncharacterized conser 80.2 90 0.002 33.6 16.0 66 445-510 58-126 (657)
410 KOG1983 Tomosyn and related SN 79.8 1.1E+02 0.0024 37.3 18.9 42 447-488 229-271 (993)
411 KOG2395 Protein involved in va 79.8 9.1 0.0002 41.5 8.7 92 234-336 398-499 (644)
412 PHA02713 hypothetical protein; 79.7 36 0.00079 38.6 14.4 29 462-490 511-542 (557)
413 TIGR02604 Piru_Ver_Nterm putat 79.2 37 0.0008 36.2 13.7 63 260-326 75-142 (367)
414 TIGR02604 Piru_Ver_Nterm putat 79.1 60 0.0013 34.6 15.2 96 257-362 14-135 (367)
415 KOG3630 Nuclear pore complex, 78.8 28 0.00061 41.4 12.8 105 208-324 155-260 (1405)
416 PRK13684 Ycf48-like protein; P 78.6 79 0.0017 33.2 15.7 116 259-388 174-294 (334)
417 PF07676 PD40: WD40-like Beta 78.3 6.2 0.00014 26.4 4.9 23 451-473 7-29 (39)
418 KOG1897 Damage-specific DNA bi 78.0 1.6E+02 0.0034 35.1 38.4 110 455-572 777-899 (1096)
419 KOG1916 Nuclear protein, conta 77.9 0.66 1.4E-05 52.7 -0.2 65 262-336 189-264 (1283)
420 PRK10115 protease 2; Provision 77.2 1.5E+02 0.0033 34.6 23.1 31 309-339 128-163 (686)
421 KOG4460 Nuclear pore complex, 76.5 12 0.00027 40.4 8.6 77 25-101 109-202 (741)
422 PF14583 Pectate_lyase22: Olig 75.0 1.2E+02 0.0026 32.3 25.2 29 545-573 354-383 (386)
423 PHA03098 kelch-like protein; P 73.7 99 0.0021 34.8 16.0 29 462-490 486-520 (534)
424 KOG1898 Splicing factor 3b, su 73.4 2.1E+02 0.0046 34.3 21.9 81 259-347 542-628 (1205)
425 PF12234 Rav1p_C: RAVE protein 73.2 34 0.00074 38.9 11.5 103 226-336 37-155 (631)
426 KOG4441 Proteins containing BT 72.9 92 0.002 35.5 15.2 70 459-529 376-452 (571)
427 COG4590 ABC-type uncharacteriz 72.2 21 0.00045 38.1 8.8 32 68-100 221-252 (733)
428 KOG2395 Protein involved in va 72.1 24 0.00053 38.4 9.4 117 240-362 356-483 (644)
429 PF08728 CRT10: CRT10; InterP 71.9 1.9E+02 0.0041 33.6 17.0 73 258-336 164-245 (717)
430 PF14870 PSII_BNR: Photosynthe 71.4 1.3E+02 0.0028 31.1 23.3 118 258-389 145-268 (302)
431 PHA02790 Kelch-like protein; P 70.7 1.2E+02 0.0026 33.7 15.4 28 461-488 444-477 (480)
432 PLN00033 photosystem II stabil 69.9 1.1E+02 0.0024 33.0 14.2 112 262-389 244-363 (398)
433 PHA02713 hypothetical protein; 68.4 97 0.0021 35.2 14.2 66 265-340 461-536 (557)
434 PHA02790 Kelch-like protein; P 67.8 1.4E+02 0.0029 33.3 15.0 66 459-529 403-470 (480)
435 TIGR03606 non_repeat_PQQ dehyd 67.1 91 0.002 34.2 12.9 100 224-327 35-165 (454)
436 PF07569 Hira: TUP1-like enhan 65.8 31 0.00067 33.8 8.3 74 264-339 18-97 (219)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 64.5 28 0.0006 37.6 8.3 83 259-346 310-407 (415)
438 COG5290 IkappaB kinase complex 63.6 69 0.0015 36.8 11.0 31 69-99 114-144 (1243)
439 PF14727 PHTB1_N: PTHB1 N-term 62.2 1.1E+02 0.0025 33.1 12.4 145 403-571 38-204 (418)
440 PF07569 Hira: TUP1-like enhan 60.2 47 0.001 32.5 8.5 72 22-97 13-95 (219)
441 PF12768 Rax2: Cortical protei 58.6 93 0.002 31.8 10.5 95 474-571 17-121 (281)
442 PF14761 HPS3_N: Hermansky-Pud 58.3 34 0.00074 33.0 6.8 45 275-328 35-80 (215)
443 KOG4499 Ca2+-binding protein R 58.0 54 0.0012 32.1 8.0 47 262-317 217-263 (310)
444 TIGR03075 PQQ_enz_alc_DH PQQ-d 57.7 3.2E+02 0.007 30.8 19.6 52 433-485 279-337 (527)
445 TIGR03606 non_repeat_PQQ dehyd 55.9 2.1E+02 0.0045 31.5 13.2 61 257-319 30-90 (454)
446 KOG4460 Nuclear pore complex, 54.3 1.3E+02 0.0028 33.0 10.8 79 262-342 109-203 (741)
447 PF12657 TFIIIC_delta: Transcr 53.5 69 0.0015 30.0 8.1 33 307-339 85-123 (173)
448 PLN00033 photosystem II stabil 53.4 3.2E+02 0.007 29.5 18.9 146 308-478 239-396 (398)
449 KOG4659 Uncharacterized conser 50.7 5.9E+02 0.013 31.7 19.7 24 303-326 657-680 (1899)
450 KOG4659 Uncharacterized conser 50.6 5.9E+02 0.013 31.7 18.0 21 71-91 596-616 (1899)
451 PF13964 Kelch_6: Kelch motif 50.4 20 0.00044 25.4 3.1 32 459-490 7-45 (50)
452 TIGR02276 beta_rpt_yvtn 40-res 48.9 49 0.0011 22.0 4.8 31 317-347 1-32 (42)
453 KOG1008 Uncharacterized conser 47.3 8.2 0.00018 42.7 0.9 106 227-337 163-275 (783)
454 COG3204 Uncharacterized protei 45.8 3.5E+02 0.0076 27.7 20.1 75 20-100 86-161 (316)
455 PF13418 Kelch_4: Galactose ox 45.7 27 0.00059 24.5 3.2 28 461-488 10-44 (49)
456 PF11715 Nup160: Nucleoporin N 45.0 94 0.002 35.2 9.1 35 262-297 220-258 (547)
457 TIGR02276 beta_rpt_yvtn 40-res 44.5 92 0.002 20.6 6.1 31 266-297 1-32 (42)
458 PF01344 Kelch_1: Kelch motif; 44.2 37 0.00081 23.4 3.7 31 458-488 6-43 (47)
459 PF10214 Rrn6: RNA polymerase 43.0 1.5E+02 0.0032 35.3 10.5 99 262-361 151-257 (765)
460 KOG1983 Tomosyn and related SN 42.8 7.3E+02 0.016 30.5 17.2 26 316-341 243-268 (993)
461 PRK13684 Ycf48-like protein; P 40.5 4.5E+02 0.0098 27.5 22.6 35 453-488 260-295 (334)
462 PF13449 Phytase-like: Esteras 40.2 4.5E+02 0.0098 27.4 16.9 24 450-473 144-167 (326)
463 PF05694 SBP56: 56kDa selenium 40.0 1.1E+02 0.0025 33.0 7.8 67 260-326 314-392 (461)
464 PF14781 BBS2_N: Ciliary BBSom 39.1 2.8E+02 0.0062 24.7 11.9 64 447-511 42-112 (136)
465 PF11090 DUF2833: Protein of u 38.6 31 0.00066 28.0 2.6 32 457-488 2-33 (86)
466 cd00216 PQQ_DH Dehydrogenases 38.3 6E+02 0.013 28.2 25.9 76 268-347 61-138 (488)
467 COG4257 Vgb Streptogramin lyas 37.1 4.6E+02 0.01 26.6 18.1 232 224-492 67-316 (353)
468 COG5167 VID27 Protein involved 34.8 83 0.0018 34.4 5.8 62 267-338 572-633 (776)
469 PF07646 Kelch_2: Kelch motif; 34.3 58 0.0012 23.0 3.4 32 457-488 5-45 (49)
470 KOG2247 WD40 repeat-containing 34.1 6 0.00013 42.4 -2.5 141 258-414 36-182 (615)
471 PHA03098 kelch-like protein; P 33.1 7.4E+02 0.016 27.7 15.6 70 459-529 433-511 (534)
472 KOG1900 Nuclear pore complex, 32.0 4.1E+02 0.009 32.8 11.4 112 36-162 95-209 (1311)
473 PF14583 Pectate_lyase22: Olig 30.5 7E+02 0.015 26.7 19.5 89 226-323 43-140 (386)
474 COG5184 ATS1 Alpha-tubulin sup 30.4 7.5E+02 0.016 27.1 22.1 41 5-48 90-131 (476)
475 PF07250 Glyoxal_oxid_N: Glyox 29.8 4E+02 0.0086 26.5 9.5 120 225-346 73-206 (243)
476 PF10395 Utp8: Utp8 family; I 29.7 9.3E+02 0.02 27.9 17.7 31 452-482 129-160 (670)
477 TIGR01062 parC_Gneg DNA topois 29.5 1E+03 0.022 28.2 17.4 65 73-159 488-553 (735)
478 PLN02153 epithiospecifier prot 29.3 6.7E+02 0.015 26.1 12.9 32 459-490 133-176 (341)
479 PF10584 Proteasome_A_N: Prote 28.9 7.8 0.00017 22.9 -1.5 9 26-34 7-15 (23)
480 PF01436 NHL: NHL repeat; Int 28.1 1.5E+02 0.0032 18.1 4.4 22 262-283 7-28 (28)
481 PF05787 DUF839: Bacterial pro 27.7 2.2E+02 0.0047 32.0 8.1 20 306-325 500-519 (524)
482 PF13449 Phytase-like: Esteras 27.5 7.2E+02 0.016 25.9 13.3 64 262-327 90-166 (326)
483 KOG3522 Predicted guanine nucl 24.9 1.5E+02 0.0033 34.5 6.1 71 450-529 624-697 (925)
484 PF03088 Str_synth: Strictosid 24.3 2E+02 0.0042 23.7 5.2 42 276-327 35-76 (89)
485 TIGR01063 gyrA DNA gyrase, A s 23.8 1.3E+03 0.028 27.6 22.6 77 211-287 641-719 (800)
486 TIGR03547 muta_rot_YjhT mutatr 23.0 6.2E+02 0.013 26.4 10.3 40 474-514 168-209 (346)
487 PF15525 DUF4652: Domain of un 22.8 5.3E+02 0.012 24.5 8.2 84 474-558 88-177 (200)
488 PF03088 Str_synth: Strictosid 22.0 1.5E+02 0.0033 24.3 4.1 52 521-574 37-88 (89)
489 PF08728 CRT10: CRT10; InterP 21.9 2E+02 0.0043 33.4 6.3 97 267-363 113-223 (717)
490 PF12768 Rax2: Cortical protei 21.6 1.7E+02 0.0037 29.9 5.3 54 277-339 15-74 (281)
491 smart00564 PQQ beta-propeller 21.6 1.8E+02 0.0039 18.0 3.7 24 321-344 8-31 (33)
492 PF14779 BBS1: Ciliary BBSome 21.5 3.2E+02 0.0069 27.4 7.0 60 80-158 196-256 (257)
493 PF01731 Arylesterase: Arylest 21.2 1.7E+02 0.0037 23.9 4.2 27 71-97 57-84 (86)
494 TIGR02608 delta_60_rpt delta-6 20.7 1.4E+02 0.003 22.1 3.2 18 455-472 3-20 (55)
No 1
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-40 Score=363.96 Aligned_cols=442 Identities=31% Similarity=0.460 Sum_probs=324.5
Q ss_pred eCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~ 307 (696)
.||+......+....+.-.....+. .--++++|++++..++++|+|+..|.+.+|+.+.-..........++ .++
T Consensus 121 sD~q~a~~~~n~~~~~~t~~i~~~~-~l~~DAvc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~----~~t 195 (1023)
T KOG2006|consen 121 SDGQAAQLLLNHQGFKYTESIGAWK-PLGGDAVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDD----TLT 195 (1023)
T ss_pred ccchhhhhhcccccchhhhhhhhhc-cccccceeeeccchhhhheecccccceeehhhhhhccceeeecccCc----ccc
Confidence 7777665544432222111111111 23378999999999999999999999999998763222222222122 245
Q ss_pred CCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEE
Q 005459 308 GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYA 387 (696)
Q Consensus 308 g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~ 387 (696)
-++.-+.|+|+++.++.++..|...+|+..++..+.+.............|+|......++-.+......|...+..++.
T Consensus 196 i~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~~~ms~v~~~~~ts~~~~~f~~~~~l~e~~~~s~~~~~q~~e~~~~L~~ 275 (1023)
T KOG2006|consen 196 VPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGNILMLPVKKLELTSKVVLKFNPLIIMKGEPTFSKVGAIQWEEVGIVLFP 275 (1023)
T ss_pred ccccccCcCCccceeeeeecccceEEecccccccccchhhhhccchhhhccCcceeeecccccCccchhhccceeeeeec
Confidence 58899999999999999999999999999999887776654344566677777765555666666678888888887776
Q ss_pred EecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCC---CCcceeEEeecCeeeecCCCceEEEEEcCCC
Q 005459 388 IEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSED---TDELKILHLNLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 388 ~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~---~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG 464 (696)
........+..+.....+. ..++........++.+.++....+ .+..+|.++++|.+|...||||++++.++||
T Consensus 276 ~~~~~~~~~~~~~s~sc~~---~S~~~~~~~~l~~d~~~l~~~~~~~s~~~~~~w~~~~~P~~y~ssnwpiry~s~~~dg 352 (1023)
T KOG2006|consen 276 HGEQILTISDFKVSKSCLV---ESKTIVCRAQLMGDSHDLVSKATDVSITDIEKWDHLALPLTYTSSNWPIRYVSIDYDG 352 (1023)
T ss_pred ccccccchhheeecccccc---cccceeechhhccchhhhhhhhccccccchhhhheeecccccccccCceeEEeecCCc
Confidence 6543322221111111111 133333344445555555444444 4556899999999999999999999999999
Q ss_pred CEEEEEeCCccEEEEccCCceEecCCccceeeeEEE-eEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeec
Q 005459 465 MFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (696)
Q Consensus 465 ~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~ 542 (696)
+++|+||..|.++|+..+++||.|+++.||+.+.|+ ||.|++++++.+|+.+.+..+++++|+++ ++|+. ..|....
T Consensus 353 ~~lavAgl~gla~y~~~~~~Wk~f~~~sqEq~i~vtg~liW~~~f~v~~~~~~~~~~~~L~fy~~~~~~dn~-~a~k~~~ 431 (1023)
T KOG2006|consen 353 KHLAVAGLHGLARYSLSSKRWKLFGDESQEQNINVTGGLIWWDDFVVHGCVEEGNRTFELYFYPRDYNLDNN-LAHKSAA 431 (1023)
T ss_pred cEEEEeecccceEEEeecceeecCCccchhhceecceeeEEecceEEEEEEeecCceeeeEecccccccchh-hccchhh
Confidence 999999999999999999999999999999999998 59999999999999999999999999999 77776 5577666
Q ss_pred CCccEEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCceEEEecCCCccccccCCCCC
Q 005459 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAAMRFIPDQVPRECSLNNHVS 622 (696)
Q Consensus 543 ~~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 622 (696)
...+..+.+.++.+++.++|+...+|++..+. ...+.+..+++++|+.+.+||+|||++|.++|......+ .+
T Consensus 432 ~~~~~d~v~~~~~livitad~~~~~~~~~~~s------~t~l~~~~~~~~~~~~i~thP~~ivs~t~t~~~l~~i~~-~~ 504 (1023)
T KOG2006|consen 432 SAKVSDLVCVDYSLIVITADGKYQHWELWRNS------QTQLDLENVTEVSIVLINTHPACIVSLTVTSPSLANIGN-DN 504 (1023)
T ss_pred hhhhhheeeecceeEEEEecceEEEEEeccch------hhccccceeeEEEEEeecCCCcEEEEeeccCccccccCc-cc
Confidence 66555667788999999999999999987643 456788999999999999999999999999998433221 23
Q ss_pred CCccccccCCceEEEEEeCCeEEEEecCC-------CCeeEeccccceEEecCCCcccccCccceeeeeeeCCCC-----
Q 005459 623 TSSDMLAREPARCLILRANGELSLLDLDD-------GRERELTDSVELFWVTCGQLEEKTSLIEEVSWLDYGYRG----- 690 (696)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~-------~~~~~la~~ve~~w~~~~~~~~~~~~~~~~~~~~~~~~g----- 690 (696)
|.+ + +++..+.+|++.+++... ..+++||.+||+||++..+ +.....+..|+.||+.|
T Consensus 505 l~~----~---~~~~~~~~n~i~~l~~~~~~~~~~~~~~~~la~~Ve~~~~~ss~---~~~~~~d~~Wl~~g~~~~~~~~ 574 (1023)
T KOG2006|consen 505 LQF----Y---KSITVTFNNLIGRLIINSSLRDGALYQENKLASLVENFWLNSSF---EDQQVLDLHWLGDGANGCHMKN 574 (1023)
T ss_pred hhH----h---hhhhhhhcchhheeehhhhccchhhhhhhhhhhhHHHeecCcHH---hhhhhhhceeeccCCCcccccc
Confidence 333 2 344444455555554432 2578999999999999322 22345688999999999
Q ss_pred cEEEe
Q 005459 691 MQVTN 695 (696)
Q Consensus 691 ~~vw~ 695 (696)
|++|.
T Consensus 575 ~~g~~ 579 (1023)
T KOG2006|consen 575 MDGCP 579 (1023)
T ss_pred ccCCc
Confidence 88763
No 2
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.8e-36 Score=315.05 Aligned_cols=451 Identities=17% Similarity=0.208 Sum_probs=310.9
Q ss_pred CCCCCceEEEEEeCCcEEEEEccCeEEEeecCCcee-e--EEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEE
Q 005459 17 LCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKV-R--LGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHI 93 (696)
Q Consensus 17 ~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~-~--l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l 93 (696)
..+.....|.|||||++||++..+-++||.. |+. . ..-+.+...-+.++..++++.||-|++.|++++.|-..++
T Consensus 94 ~fk~~v~~i~fSPng~~fav~~gn~lqiw~~--P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl 171 (893)
T KOG0291|consen 94 NFKRGVGAIKFSPNGKFFAVGCGNLLQIWHA--PGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARL 171 (893)
T ss_pred eecCccceEEECCCCcEEEEEecceeEEEec--CcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEE
Confidence 3456677799999999999999999999998 332 1 3334444444556788999999999999999999999999
Q ss_pred EEEEecCcccccCCCCCCCceeeeeeEEEeeecccccc-ceeEEEe-eeCCCeEEEEecCCcEEEEecCCccc---cc--
Q 005459 94 FKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEK-GLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFY---GA-- 166 (696)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~-~~~~~~llv~t~~g~i~~~~w~~~~~---~~-- 166 (696)
|.++..++.... .+.++ +..|.|+ ..+...|++-+.||.+..|..+.... ..
T Consensus 172 ~~v~~~k~~~~~---------------------~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~k 230 (893)
T KOG0291|consen 172 FGVDGNKNLFTY---------------------ALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEK 230 (893)
T ss_pred EEeccccccceE---------------------eccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccc
Confidence 999854431110 01222 3334444 34556788889999887765541000 00
Q ss_pred -ee----e-ccCCCC-------------------CcccccccccCCCC-cccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459 167 -FE----L-VHSSND-------------------SSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 167 -~~----~-~~~p~~-------------------~~~~~~~~~s~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
.+ . ...+.. +..+....|..... ++....++.+.- ...+.-..|.++..+..-
T Consensus 231 d~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~L-yelP~f~lih~LSis~~~ 309 (893)
T KOG0291|consen 231 DEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGL-YELPDFNLIHSLSISDQK 309 (893)
T ss_pred cccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEE-EecCCceEEEEeecccce
Confidence 00 0 000000 00111111111111 111112211110 011222223333333222
Q ss_pred ceEEEEEeCCcEEEEeecc-CCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEE
Q 005459 221 RLLFVLYSNGQLMSCSVSK-KGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTV 295 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d-~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~ 295 (696)
...+++...|..++.++.. +.+-+|+.....- .++|...+. +++||||++||+|+.||.|+|||... +-++.++
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S-gfC~vTF 388 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS-GFCFVTF 388 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC-ceEEEEe
Confidence 3445666677777777654 4566676544321 268888776 99999999999999999999999988 8899999
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-- 373 (696)
.. |+..|+.+.|+.+|+.+++.+-||+|+.||+...+...++.....-..++++.+|.+ +.+..|.
T Consensus 389 te--------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG----elV~AG~~d 456 (893)
T KOG0291|consen 389 TE--------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG----ELVCAGAQD 456 (893)
T ss_pred cc--------CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC----CEEEeeccc
Confidence 98 999999999999999999999999999999999999999988656678899999998 8877776
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
.+.+|+.++|+++-++.||.++|.. |++ +..++|++.|.|+++|++......+ .-
T Consensus 457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~v--------------------Et 516 (893)
T KOG0291|consen 457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTV--------------------ET 516 (893)
T ss_pred eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCcee--------------------ee
Confidence 8999999999999999999999965 555 8899999999999999988764421 22
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE--------e---------cCCcc--ceeeeEEEeEeeeCcE
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR--------V---------FGDIT--QEQKIQSKGLLWLGKI 508 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~--------~---------f~~~~--~e~~~~v~~~~w~~~~ 508 (696)
..+...+..++|+|||+.||++.-||.+ +||.+.+.-. + +..+. +.+.|+.......++.
T Consensus 517 l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 517 LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 3345568999999999999999999999 9999765321 0 11111 1122333344456788
Q ss_pred EEEEEeecCCCeEEEEEeeCC
Q 005459 509 IVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 509 lv~~~~~~~~~~~~lr~y~~~ 529 (696)
++++ +....|.+|+..
T Consensus 597 IlAg-----G~sn~iCiY~v~ 612 (893)
T KOG0291|consen 597 ILAG-----GESNSICIYDVP 612 (893)
T ss_pred EEec-----CCcccEEEEECc
Confidence 8887 445678999764
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-38 Score=305.73 Aligned_cols=344 Identities=14% Similarity=0.120 Sum_probs=282.1
Q ss_pred ccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceee
Q 005459 38 SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (696)
Q Consensus 38 ~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~ 116 (696)
+++.|.|-+..|.-..+....|...++..| +.+.++.|||||+.||+++.|.++|+||+.+.......
T Consensus 85 te~~l~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~----------- 153 (480)
T KOG0271|consen 85 TEDVLTLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTC----------- 153 (480)
T ss_pred hhheeeEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceee-----------
Confidence 566677666533333445556777788766 56789999999999999999999999999866543222
Q ss_pred eeeEEEeeeccccccceeEEE--eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459 117 KISLVLNEQLPFAEKGLSVSN--IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (696)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~--~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~ 194 (696)
+++..-|.| ++||++.|+.|+.||.|.+ |+.++.....
T Consensus 154 ------------KgH~~WVlcvawsPDgk~iASG~~dg~I~l--wdpktg~~~g-------------------------- 193 (480)
T KOG0271|consen 154 ------------KGHKNWVLCVAWSPDGKKIASGSKDGSIRL--WDPKTGQQIG-------------------------- 193 (480)
T ss_pred ------------cCCccEEEEEEECCCcchhhccccCCeEEE--ecCCCCCccc--------------------------
Confidence 233334444 5789999999999999987 6765544321
Q ss_pred CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcE
Q 005459 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQI 270 (696)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~ 270 (696)
..+.+|+..|+.++|.|. -..|+.+.+++++.|+++++||...+.+. .+|..+|. +.|--+ .+
T Consensus 194 -------~~l~gH~K~It~Lawep~-----hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gl 260 (480)
T KOG0271|consen 194 -------RALRGHKKWITALAWEPL-----HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GL 260 (480)
T ss_pred -------ccccCcccceeEEeeccc-----ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ce
Confidence 245577888999999883 34688899999999999999998876553 78998886 776544 58
Q ss_pred EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC-----------CCCC-------------------
Q 005459 271 LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-----------PDNS------------------- 320 (696)
Q Consensus 271 la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s-----------pdg~------------------- 320 (696)
|++|+.|++|++|+..+ +.+.+++++ |...|+.|+.| |.|+
T Consensus 261 iySgS~DrtIkvw~a~d-G~~~r~lkG--------HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 261 IYSGSQDRTIKVWRALD-GKLCRELKG--------HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred EEecCCCceEEEEEccc-hhHHHhhcc--------cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 99999999999999998 899999999 99999999877 3344
Q ss_pred ------eEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec
Q 005459 321 ------AFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 321 ------~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (696)
.|++|++|.++.+|+... .+++....+| ..-|+.+.||||+ .+++|++ ++++|+..+++.+.++.
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH-q~lVn~V~fSPd~----r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH-QALVNHVSFSPDG----RYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhch-hhheeeEEECCCc----cEEEEeecccceeeeeCCCcchhhhhh
Confidence 499999999999999864 4477777788 8889999999999 9999998 99999999999999999
Q ss_pred CCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459 391 GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (696)
Q Consensus 391 ~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l 467 (696)
||-..|+++.+ .+.+++++.|.++++|++.+... ...+-+|...|.++.|||||+.+
T Consensus 407 GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 407 GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------KQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------cccCCCCCceEEEEEecCCCcee
Confidence 99999988877 67899999999999999887654 45667899999999999999999
Q ss_pred EEEeCCccE-EEE
Q 005459 468 AVAGLHGLI-LYD 479 (696)
Q Consensus 468 a~ag~dG~i-~w~ 479 (696)
|+||.|..+ +|.
T Consensus 467 ~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 467 ASGGKDKVLRLWR 479 (480)
T ss_pred ecCCCceEEEeec
Confidence 999999999 884
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-36 Score=295.84 Aligned_cols=331 Identities=15% Similarity=0.188 Sum_probs=250.7
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~ 279 (696)
+.+|..+|.++ .|+|+|+.+++++.|.|+++||..+.... .+|...|- ++|+|||+.||+|+.||+
T Consensus 111 ~~GH~e~Vl~~----------~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~ 180 (480)
T KOG0271|consen 111 IAGHGEAVLSV----------QFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGS 180 (480)
T ss_pred cCCCCCcEEEE----------EecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCe
Confidence 44667777664 48999999999999999999998765433 78999886 999999999999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-----CCCeEEEEEcCCcEEEEEccCCeeEEEeeccccccee
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSIS 354 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-----dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~ 354 (696)
|++||..++....+.+.+ |+..|++|+|-| ..++||+++.||.++|||+..+.++..+.+| +.+|+
T Consensus 181 I~lwdpktg~~~g~~l~g--------H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH-T~~VT 251 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRG--------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH-TASVT 251 (480)
T ss_pred EEEecCCCCCcccccccC--------cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC-ccceE
Confidence 999999885666788888 999999999976 7889999999999999999999999999999 88899
Q ss_pred cccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeee----------
Q 005459 355 SPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQV---------- 419 (696)
Q Consensus 355 ~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~---------- 419 (696)
++.+--+ ..+.+|+ ++++|+...+.+...+.+|...|..++. .-.+-++..|.+-+--.-
T Consensus 252 CvrwGG~-----gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 252 CVRWGGE-----GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEEcCC-----ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 9999655 4677887 9999999999999999999988844433 111223333322111000
Q ss_pred -----eecCCeEEEEecCCCCcceeEEee---cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe-cC
Q 005459 420 -----IYGEDRLLVVQSEDTDELKILHLN---LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV-FG 489 (696)
Q Consensus 420 -----~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~-f~ 489 (696)
.....+.++...+|...+.|...+ ......+|+.-|..+.|||||+|+|+|+-|..+ +|+..+|+.-. |.
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfR 406 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFR 406 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhh
Confidence 000112233333333344443221 234567999999999999999999999999999 99999998432 21
Q ss_pred CccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceE
Q 005459 490 DITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDV 565 (696)
Q Consensus 490 ~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~ 565 (696)
. +--.|-.++|..+ .||.+ +.+..|++|+.. +|-.....|..++-. +-.+++|..++.+..|..+
T Consensus 407 G----Hv~~VYqvawsaDsRLlVS~-----SkDsTLKvw~V~tkKl~~DLpGh~DEVf~--vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 407 G----HVAAVYQVAWSADSRLLVSG-----SKDSTLKVWDVRTKKLKQDLPGHADEVFA--VDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred h----ccceeEEEEeccCccEEEEc-----CCCceEEEEEeeeeeecccCCCCCceEEE--EEecCCCceeecCCCceEE
Confidence 1 1123668999876 56655 667899999985 555544456665554 6677899999999999999
Q ss_pred EEEE
Q 005459 566 HIFH 569 (696)
Q Consensus 566 ~l~~ 569 (696)
+||.
T Consensus 476 ~lw~ 479 (480)
T KOG0271|consen 476 RLWR 479 (480)
T ss_pred Eeec
Confidence 8885
No 5
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-31 Score=281.25 Aligned_cols=458 Identities=17% Similarity=0.188 Sum_probs=317.2
Q ss_pred CCceEEEEEeCCcEEEEEccCeEE-EeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIASPCHIE-LWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~~v~-iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
....-++.||+|.+|.++.++... +=+. ..+..+..+. -.+++-++.|||||+.+|++.. +.+.||....
T Consensus 56 ~NI~~ialSp~g~lllavdE~g~~~lvs~-~~r~Vlh~f~-------fk~~v~~i~fSPng~~fav~~g-n~lqiw~~P~ 126 (893)
T KOG0291|consen 56 YNITRIALSPDGTLLLAVDERGRALLVSL-LSRSVLHRFN-------FKRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPG 126 (893)
T ss_pred CceEEEEeCCCceEEEEEcCCCcEEEEec-ccceeeEEEe-------ecCccceEEECCCCcEEEEEec-ceeEEEecCc
Confidence 456668999999999888655333 3333 1233332221 1356679999999999999864 4799999864
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCC
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDS 176 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~ 176 (696)
..+..+.+ +.......++...+.++ +.|...+++|+.|-..+++.-++..+.
T Consensus 127 ~~~~~~~p---------------Fvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~----------- 180 (893)
T KOG0291|consen 127 EIKNEFNP---------------FVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL----------- 180 (893)
T ss_pred chhcccCc---------------ceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc-----------
Confidence 33211110 11112233444455555 456677888899999888765544331
Q ss_pred cccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee--------
Q 005459 177 SVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-------- 248 (696)
Q Consensus 177 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~-------- 248 (696)
....+.+|+.+|...-|.........++.||.+++..........+..+
T Consensus 181 -----------------------~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 181 -----------------------FTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred -----------------------ceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 1124557788888877777777777788888888877763222222210
Q ss_pred -----ecce------e---------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC------
Q 005459 249 -----KIDK------E---------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY------ 302 (696)
Q Consensus 249 -----~~~~------~---------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~------ 302 (696)
.++. + ....+.++++|++.-++||+|-.+|...+|.+.+ ..+++.++..+.+.
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N 316 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFN 316 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEec
Confidence 0000 0 1123455699999999999999999999999877 55555444332110
Q ss_pred -----------------------------CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459 303 -----------------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (696)
Q Consensus 303 -----------------------------~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (696)
-.+|...++++++||||+++|+|++||.|||||...+-|+.|+.+| ++.|
T Consensus 317 ~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH-ts~V 395 (893)
T KOG0291|consen 317 STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH-TSGV 395 (893)
T ss_pred ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC-CCce
Confidence 1269999999999999999999999999999999999999999999 8889
Q ss_pred ecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcc-eE--EEEec-ceeeeeccCCC-CceeeeeeecCCe
Q 005459 354 SSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE-RV--LIFSF-GKCCLNRGVSG-MTYARQVIYGEDR 425 (696)
Q Consensus 354 ~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~-~v--~~~~~-~~~~~s~~~d~-~~~~w~~~~~~~~ 425 (696)
+.+.|+..+ +.+++.+ +++.||...|+.+.++..... +. ++.++ +..+..|+.|. .+.+|++.+|..
T Consensus 396 t~v~f~~~g----~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql- 470 (893)
T KOG0291|consen 396 TAVQFTARG----NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL- 470 (893)
T ss_pred EEEEEEecC----CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-
Confidence 999999998 8888877 999999999999999865322 22 66666 66677777776 678999887765
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEee
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW 504 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w 504 (696)
...+.||.+||.+++|+|+|..||+|+-|.+| +||+-+.. ... ++-+..-.+.++.+
T Consensus 471 -------------------lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-~~v--Etl~i~sdvl~vsf 528 (893)
T KOG0291|consen 471 -------------------LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-GTV--ETLEIRSDVLAVSF 528 (893)
T ss_pred -------------------eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC-cee--eeEeeccceeEEEE
Confidence 66788999999999999999999999999999 99986542 110 01111112556666
Q ss_pred e--CcEEEEEEeecCCCeEEEEEeeCC---CC---C------cc-----ce-----eEEeecCCccEEEEccCCEEEEEE
Q 005459 505 L--GKIIVVCNYIDSSNTYELLFYPRY---HL---D------QS-----SL-----LCRKSLLAKPIVMDVYEDYILVTY 560 (696)
Q Consensus 505 ~--~~~lv~~~~~~~~~~~~lr~y~~~---~l---~------~~-----~~-----~~~~~~~~~~l~~~~~~~~llv~~ 560 (696)
. ++.|.++ .-+++|-||+.. ++ + .. .. ...+.+. .+..+++|..+|.++
T Consensus 529 rPdG~elaVa-----TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ft--ti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 529 RPDGKELAVA-----TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFT--TICYSADGKCILAGG 601 (893)
T ss_pred cCCCCeEEEE-----EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceE--EEEEcCCCCEEEecC
Confidence 6 6677776 344788888853 11 0 00 00 0011222 367788999999999
Q ss_pred cCceEEEEEEE
Q 005459 561 RPFDVHIFHVK 571 (696)
Q Consensus 561 ~d~~~~l~~~~ 571 (696)
..+.|+||++.
T Consensus 602 ~sn~iCiY~v~ 612 (893)
T KOG0291|consen 602 ESNSICIYDVP 612 (893)
T ss_pred CcccEEEEECc
Confidence 99999999864
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=285.03 Aligned_cols=275 Identities=14% Similarity=0.137 Sum_probs=226.5
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eee--CC
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVS--DN 142 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~--~~ 142 (696)
.+++..+.||+||+.||+++-+|.+++|+....+....+.+|. ..|.+ |.| ++
T Consensus 175 ~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~-----------------------~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 175 TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT-----------------------SRVGAAVFHPVDSD 231 (459)
T ss_pred CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc-----------------------cceeeEEEccCCCc
Confidence 4678899999999999999999999999997553322232332 22222 223 25
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
..|+.|+.||++.+|..+.+.... .+.+|...|..
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~------------------------------------~l~gH~~RVs~--------- 266 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ------------------------------------DLEGHLARVSR--------- 266 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh------------------------------------hhhcchhhhee---------
Confidence 689999999999997666542210 12234444544
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
++|.|+|+++.+++.|.+-++||+.+...+ .||...+. ++|+|||.++++|+.|..-||||+++ +..+..+.+
T Consensus 267 -VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~g- 343 (459)
T KOG0272|consen 267 -VAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLAG- 343 (459)
T ss_pred -eeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-CcEEEEecc-
Confidence 458999999999999999999999987654 78999998 99999999999999999999999999 899999999
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEE
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W 378 (696)
|..+|.+|+|||+|+.||+|+.|++++|||+....++.++.+| .+-|+.+.|+|..
T Consensus 344 -------H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH-~nlVS~Vk~~p~~---------------- 399 (459)
T KOG0272|consen 344 -------HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH-SNLVSQVKYSPQE---------------- 399 (459)
T ss_pred -------cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc-cchhhheEecccC----------------
Confidence 9999999999999999999999999999999999999999988 6777777777743
Q ss_pred cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
+..++|+++|+++++|.-..... ..++.||...|-++
T Consensus 400 -----------------------g~fL~TasyD~t~kiWs~~~~~~--------------------~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 400 -----------------------GYFLVTASYDNTVKIWSTRTWSP--------------------LKSLAGHEGKVISL 436 (459)
T ss_pred -----------------------CeEEEEcccCcceeeecCCCccc--------------------chhhcCCccceEEE
Confidence 35678899999999998554433 56788999999999
Q ss_pred EEcCCCCEEEEEeCCccE-EEE
Q 005459 459 AASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~i-~w~ 479 (696)
.+|+||+++++++.|.++ +|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 999999999999999999 995
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.3e-33 Score=274.27 Aligned_cols=271 Identities=15% Similarity=0.243 Sum_probs=233.2
Q ss_pred CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcE
Q 005459 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGL 331 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v 331 (696)
+-+.++. +.||+|++.||+|+.+|.++||+..+ ...+.++.+ |++.|.++.|+|. +..||||+.||++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~-~~~~~~l~g--------H~~~v~~~~fhP~~~~~~lat~s~Dgtv 243 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-CNLLQTLRG--------HTSRVGAAVFHPVDSDLNLATASADGTV 243 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC-cceeEEEec--------cccceeeEEEccCCCccceeeeccCCce
Confidence 4456677 99999999999999999999999998 788999999 9999999999996 7799999999999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceee
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCC 405 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~ 405 (696)
++|++.+..++..|.+| ...|..++|+|+| +++.|++ +-++||++++..+...+||...| ++|.+ |..+
T Consensus 244 klw~~~~e~~l~~l~gH-~~RVs~VafHPsG----~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 244 KLWKLSQETPLQDLEGH-LARVSRVAFHPSG----KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred eeeccCCCcchhhhhcc-hhhheeeeecCCC----ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCcee
Confidence 99999999999999999 6889999999999 9999998 89999999999988889999999 45555 8889
Q ss_pred eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+||+.|..-++||+.++.. ...+.+|..+|.+++|||+|..||+||.|+++ +||++..+
T Consensus 319 ~tGGlD~~~RvWDlRtgr~--------------------im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~ 378 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRC--------------------IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS 378 (459)
T ss_pred eccCccchhheeecccCcE--------------------EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc
Confidence 9999999999999999987 34566899999999999999999999999999 99998765
Q ss_pred eEecCCccceeeeEEEeEeee---CcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459 485 WRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVT 559 (696)
Q Consensus 485 w~~f~~~~~e~~~~v~~~~w~---~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~ 559 (696)
- ++....|.+ .|..+.+. +.+|++|+| +..+++|+.. .+..+...|..++-+ +-++++++.++++
T Consensus 379 ~-ly~ipAH~n--lVS~Vk~~p~~g~fL~Tasy-----D~t~kiWs~~~~~~~ksLaGHe~kV~s--~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 379 E-LYTIPAHSN--LVSQVKYSPQEGYFLVTASY-----DNTVKIWSTRTWSPLKSLAGHEGKVIS--LDISPDSQAIATS 448 (459)
T ss_pred c-ceecccccc--hhhheEecccCCeEEEEccc-----CcceeeecCCCcccchhhcCCccceEE--EEeccCCceEEEe
Confidence 3 444444433 25566664 578888855 3689999987 555666677776665 6677889999999
Q ss_pred EcCceEEEEE
Q 005459 560 YRPFDVHIFH 569 (696)
Q Consensus 560 ~~d~~~~l~~ 569 (696)
+.|.+++||.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999994
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.7e-29 Score=253.96 Aligned_cols=458 Identities=13% Similarity=0.150 Sum_probs=309.9
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC--cEEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS--LYLHIFKV 96 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d--g~l~l~~l 96 (696)
...-+..|||.|.++|++ ..++|+||+..+... +-+..-.. -.|++.++.|++||++|++.... .+.++|-.
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~h-iLKnef~v----~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEH-ILKNEFQV----LAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcce-eeeeeeee----cccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 345567899999999988 467999999964322 22221111 13899999999999998886532 23344444
Q ss_pred EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeC-CCeEEEEecCCcEEEEecCCccccceeeccCC
Q 005459 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSS 173 (696)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p 173 (696)
++++..-.+ .++...+.+ |.+. +.+++.+++|+.+..+ +|. .++.+
T Consensus 135 DSG~SvGei-----------------------~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff--eGP---PFKFk--- 183 (603)
T KOG0318|consen 135 DSGNSVGEI-----------------------TGHSRRINSVDFKPSRPFRIATGSDDNTVAFF--EGP---PFKFK--- 183 (603)
T ss_pred cCCCcccee-----------------------eccceeEeeeeccCCCceEEEeccCCCeEEEe--eCC---Ceeee---
Confidence 433321111 122222322 2222 4789999999998775 332 11110
Q ss_pred CCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee
Q 005459 174 NDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE 253 (696)
Q Consensus 174 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~ 253 (696)
.....|...|.++. ++|||..+++.+.|+++.++|..++++.
T Consensus 184 ----------------------------~s~r~HskFV~~VR----------ysPDG~~Fat~gsDgki~iyDGktge~v 225 (603)
T KOG0318|consen 184 ----------------------------SSFREHSKFVNCVR----------YSPDGSRFATAGSDGKIYIYDGKTGEKV 225 (603)
T ss_pred ----------------------------ecccccccceeeEE----------ECCCCCeEEEecCCccEEEEcCCCccEE
Confidence 12234455676666 6778888888888888888888877654
Q ss_pred ------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 254 ------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 254 ------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
.+|.+.+. ++|+||++.+++.+.|.++||||+.+ .++++++..... -...-..+-|- +..|++-+
T Consensus 226 g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~-~slv~t~~~~~~-----v~dqqvG~lWq--kd~lItVS 297 (603)
T KOG0318|consen 226 GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST-NSLVSTWPMGST-----VEDQQVGCLWQ--KDHLITVS 297 (603)
T ss_pred EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec-cceEEEeecCCc-----hhceEEEEEEe--CCeEEEEE
Confidence 47999998 99999999999999999999999998 788888875110 01223334465 56899999
Q ss_pred cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEEec-
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIFSF- 401 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~~~- 401 (696)
.+|++...+...+....++.|| ...|+++..+|++ ..+.+|+ .+..|+...+..-.. .++|...|..+..
T Consensus 298 l~G~in~ln~~d~~~~~~i~GH-nK~ITaLtv~~d~----~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~ 372 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGH-NKSITALTVSPDG----KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS 372 (603)
T ss_pred cCcEEEEecccCCChhheeccc-ccceeEEEEcCCC----CEEEeeccCceEEEEecCCccccccccccccceEEEEeec
Confidence 9999999999999999999999 7789999999999 8999998 899999987765444 3678999988877
Q ss_pred -ceeeeeccCCCCceeeeeeecCC---e--------EEEEecCCCCcce---eEEeecCeee-----ecCCCceEEEEEc
Q 005459 402 -GKCCLNRGVSGMTYARQVIYGED---R--------LLVVQSEDTDELK---ILHLNLPVSY-----ISQNWPVQHVAAS 461 (696)
Q Consensus 402 -~~~~~s~~~d~~~~~w~~~~~~~---~--------~~~~~~~~~~~~~---w~~~~~~~~~-----~~~~~~I~~va~s 461 (696)
...+.+.+.|.+++.-++..... . .-+....+..... -..+.+.+.. ..-.....++|++
T Consensus 373 ~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 373 ESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS 452 (603)
T ss_pred CCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc
Confidence 47899999999998876643321 1 0111111100000 0111111100 0112246789999
Q ss_pred CCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCC-C--CCccc
Q 005459 462 KDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRY-H--LDQSS 535 (696)
Q Consensus 462 ~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~-~--l~~~~ 535 (696)
||++++|+||.||.+ +|.+..+..+.+.. ..+....++.+...+ .+|+++ +-..++-+|++. . -.+..
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~-~~~h~a~iT~vaySpd~~yla~~-----Da~rkvv~yd~~s~~~~~~~w 526 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEAK-LLEHRAAITDVAYSPDGAYLAAG-----DASRKVVLYDVASREVKTNRW 526 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCcccceee-eecccCCceEEEECCCCcEEEEe-----ccCCcEEEEEcccCceeccee
Confidence 999999999999999 99998765332211 112223356677754 466665 455789999986 2 22334
Q ss_pred eeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 536 LLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
..|+-++.. ++-+|+..++++++-|..|.+|.++.
T Consensus 527 ~FHtakI~~--~aWsP~n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 527 AFHTAKINC--VAWSPNNKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred eeeeeeEEE--EEeCCCceEEEeccccceEEEEEccC
Confidence 557777766 78889888888899899999998763
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-30 Score=260.92 Aligned_cols=376 Identities=15% Similarity=0.208 Sum_probs=250.3
Q ss_pred eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
.-|+|||||.+||++ +|+++.|+|. +.+..++.+.. +-.+.|.+.++.||||++++++++.|.+++|||+.+.+.
T Consensus 194 ~~VRysPDG~~Fat~gsDgki~iyDG-ktge~vg~l~~---~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl 269 (603)
T KOG0318|consen 194 NCVRYSPDGSRFATAGSDGKIYIYDG-KTGEKVGELED---SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL 269 (603)
T ss_pred eeEEECCCCCeEEEecCCccEEEEcC-CCccEEEEecC---CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce
Confidence 338899999999998 6889999999 58898888764 234679999999999999999999999999999987753
Q ss_pred ccc-cCCCCCCCceeeee-------eEEEeee------------ccccccceeEEEe--eeCCCeEEEEecCCcEEEEec
Q 005459 102 SIQ-IGGKQPSGLFFIKI-------SLVLNEQ------------LPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISW 159 (696)
Q Consensus 102 ~~~-~~~~~~~~~~~~~~-------~l~~~~~------------~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w 159 (696)
... ..+...+++++.++ .+++.+. ..+.++...|+++ .++++.|+.|+.||.|.. |
T Consensus 270 v~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~--W 347 (603)
T KOG0318|consen 270 VSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS--W 347 (603)
T ss_pred EEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE--E
Confidence 222 22223333333221 1111111 1234666667665 567899999999999865 7
Q ss_pred CCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC---cccEEEEEEccCcceEEEEEeCCcEEEEe
Q 005459 160 KGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI---SSAIIWLELCLPMRLLFVLYSNGQLMSCS 236 (696)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~s~dG~~~~~~ 236 (696)
+........+...++..+ +..+.-+..+++.+.+-++.++.+..... +..+..+. .... .++..+||..++.+
T Consensus 348 ~~~~g~~~~~~g~~h~nq-I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg--~QP~-~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQ-IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLG--SQPK-GLAVLSDGGTAVVA 423 (603)
T ss_pred ecCCccccccccccccce-EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecC--CCce-eEEEcCCCCEEEEE
Confidence 655443332222222222 22222222223333333333333222111 11111221 1122 45566776655555
Q ss_pred eccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC
Q 005459 237 VSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT 316 (696)
Q Consensus 237 ~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s 316 (696)
..+.-+-+-+........---.+.++|++|+++.+|+|++||.|+||.+.. .++....... .|+++|++++||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g-~~l~ee~~~~------~h~a~iT~vayS 496 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG-DELKEEAKLL------EHRAAITDVAYS 496 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC-Ccccceeeee------cccCCceEEEEC
Confidence 444322222222111111113456699999999999999999999999986 4443332222 299999999999
Q ss_pred CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce-EEEEecCC
Q 005459 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGS 392 (696)
Q Consensus 317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-l~~~~~~~ 392 (696)
|||.+||+|...+.+-+||+.++.....--..|...|.+++|+|+. +.+++|+ .+.+|+.+... .+.....|
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n----~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNN----KLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCc----eEEEeccccceEEEEEccChhhheEecccc
Confidence 9999999999999999999999876333334458899999999998 9999998 89999987532 34455678
Q ss_pred cceEEEEec--ceeeeeccCCCCceeeee
Q 005459 393 SERVLIFSF--GKCCLNRGVSGMTYARQV 419 (696)
Q Consensus 393 ~~~v~~~~~--~~~~~s~~~d~~~~~w~~ 419 (696)
...|..+.+ ...+++.+.|..+++|.+
T Consensus 573 ~~gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 573 LGGVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ccCceeEEEecCceEEeccCcceeEEecc
Confidence 888877777 778999999999999986
No 10
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-30 Score=273.59 Aligned_cols=450 Identities=15% Similarity=0.172 Sum_probs=302.7
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcE--EEEEecCcEEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLHIFKV 96 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~--lav~t~dg~l~l~~l 96 (696)
++.-.++|+|.|.++|++ .|+.+.|||.. ..-.+..++. +.|.+.++.|.|+-.+ |+++..|+.+++||+
T Consensus 106 ~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~-~~~~th~fkG------~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl 178 (775)
T KOG0319|consen 106 APVITMAFDPTGTLLATGGADGRVKVWDIK-NGYCTHSFKG------HGGVVSSLLFHPHWNRWLLASGATDGTVRVWNL 178 (775)
T ss_pred CCeEEEEEcCCCceEEeccccceEEEEEee-CCEEEEEecC------CCceEEEEEeCCccchhheeecCCCceEEEEEc
Confidence 345557899999999998 58899999995 5444454432 2366678999999875 889999999999999
Q ss_pred EecCc-ccccCCCC---------CCCc-----------eeeeee-EEEeeeccccccceeEEEeeeC-----CCeEEEEe
Q 005459 97 QITEK-SIQIGGKQ---------PSGL-----------FFIKIS-LVLNEQLPFAEKGLSVSNIVSD-----NKHMLLGL 149 (696)
Q Consensus 97 ~~~~~-~~~~~~~~---------~~~~-----------~~~~~~-l~~~~~~~~~~~~~~v~~~~~~-----~~~llv~t 149 (696)
..... ......|. ..+. .+|++. .......+....-.++ .+..+ +.++++++
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~v-v~l~~~~~~~~~~~~TaG 257 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESV-VRLREELGGKGEYIITAG 257 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeE-EEechhcCCcceEEEEec
Confidence 85543 11111111 0000 112110 0000000000000011 11122 35788888
Q ss_pred cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCC---------ccccCCcCCCcccEEEEEEccCc
Q 005459 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSG---------AFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~---------~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
.+|.++. |+.+..........|-...-..-.+....+++....++. ......+.+....|.+|.|
T Consensus 258 ~~g~~~~--~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~---- 331 (775)
T KOG0319|consen 258 GSGVVQY--WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKF---- 331 (775)
T ss_pred CCceEEE--EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeee----
Confidence 8999887 454432211100011011111222223333322221111 1111223344445555553
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeecce--ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc---eeeE
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS---LIRT 294 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~~ 294 (696)
+-|+-+.++++++...+++.+..+..+ +.||++.+. ++...+|-+||+|+.|.++++|.++++.. ++..
T Consensus 332 -----lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~ 406 (775)
T KOG0319|consen 332 -----LGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQ 406 (775)
T ss_pred -----cCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhh
Confidence 557778888888988999887765544 489999998 88778889999999999999999855322 2333
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCC-------eeEE--EeecccccceecccccCCCCC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGC-------RLMS--TIRQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~-------~~~~--~l~~~~~~~v~~~~~sp~~~~ 364 (696)
..+ |++.|.+++++..| ..|++++.|+++++|++... .+.+ +-..| ...|++++++|++
T Consensus 407 ~~g--------H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aH-dKdIN~Vaia~nd-- 475 (775)
T KOG0319|consen 407 ANG--------HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAH-DKDINCVAIAPND-- 475 (775)
T ss_pred hcc--------cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhh-cccccceEecCCC--
Confidence 344 99999999998755 48899999999999999761 1111 11234 6679999999998
Q ss_pred Cccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
..+++|+ +.++|+.+..++..++.||...||+++| .+.++|+|.|+|+++|.+.+.+.
T Consensus 476 --kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-------------- 539 (775)
T KOG0319|consen 476 --KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-------------- 539 (775)
T ss_pred --ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee--------------
Confidence 9999999 9999999999999999999999988888 55789999999999999887765
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecC
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDS 517 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~ 517 (696)
..++.||...|.-++|-.+|+.|+++|.||.+ +|++.++....--
T Consensus 540 ------lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl---------------------------- 585 (775)
T KOG0319|consen 540 ------LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL---------------------------- 585 (775)
T ss_pred ------eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh----------------------------
Confidence 78999999999999999999999999999999 9999987532210
Q ss_pred CCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459 518 SNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 518 ~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
+.++=|+| + +..++..++++++++|+.+.+|+
T Consensus 586 -D~H~DrvW-----------------a--L~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 586 -DAHNDRVW-----------------A--LSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred -hhccceeE-----------------E--EeecCccceeEecCCCeEEEEee
Confidence 11222344 2 44555677888889999999996
No 11
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.2e-29 Score=262.30 Aligned_cols=381 Identities=14% Similarity=0.178 Sum_probs=277.3
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC-----CcEEEEEecCcEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD-----TKLIAVVTSSLYLHI 93 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD-----g~~lav~t~dg~l~l 93 (696)
+...-+.|++|+.-+.++ .|+.+.|||.. .+.. .+.+..+..+-++.+-++ |.++.+++.+|.+++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~-~~~~-------l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~ 264 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLV-QYKK-------LKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQY 264 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehh-hhhh-------hheechhhheeeEEEechhcCCcceEEEEecCCceEEE
Confidence 344457899998755555 67789999994 3221 122334455556777777 779999999999999
Q ss_pred EEEEecCcccccCCCCCCC------------ceee--eeeEEEe------eeccccccceeEEEe---eeCCCeEEEEec
Q 005459 94 FKVQITEKSIQIGGKQPSG------------LFFI--KISLVLN------EQLPFAEKGLSVSNI---VSDNKHMLLGLS 150 (696)
Q Consensus 94 ~~l~~~~~~~~~~~~~~~~------------~~~~--~~~l~~~------~~~~~~~~~~~v~~~---~~~~~~llv~t~ 150 (696)
|+.+++...........++ ..+. .-++.+- -...+.+-...|..+ -+....|+++|.
T Consensus 265 ~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 265 WDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred EecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 9998765321100000100 0000 0011100 001112222233333 344478999999
Q ss_pred CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCC
Q 005459 151 DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNG 230 (696)
Q Consensus 151 ~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG 230 (696)
.+.++.+...+..-. .+.+|...|.++. .+.+|
T Consensus 345 s~~lr~y~~~~~~c~-------------------------------------ii~GH~e~vlSL~----------~~~~g 377 (775)
T KOG0319|consen 345 SPELRLYTLPTSYCQ-------------------------------------IIPGHTEAVLSLD----------VWSSG 377 (775)
T ss_pred CCceEEEecCCCceE-------------------------------------EEeCchhheeeee----------ecccC
Confidence 999988732221100 1224555565543 56889
Q ss_pred cEEEEeeccCCceeeeeeecce-------ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC--ceeeEEeecc
Q 005459 231 QLMSCSVSKKGLKLAEFIKIDK-------ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYD 299 (696)
Q Consensus 231 ~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~ 299 (696)
-++++++.|.++++|...+... ..+|...+. ++++.. ..++|+++.|+++++|++.... .....+.. +
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~-~ 456 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC-R 456 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh-h
Confidence 9999999999999997643221 167988887 888774 5799999999999999997611 11111100 0
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
.....|...|+|++.+|+.+.+|+|+.|++.++|+++...+..+|.|| ...|.++.|+|++ +.+++.+ +++
T Consensus 457 -~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH-~RGvw~V~Fs~~d----q~laT~SgD~TvK 530 (775)
T KOG0319|consen 457 -YTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGH-TRGVWCVSFSKND----QLLATCSGDKTVK 530 (775)
T ss_pred -HHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCC-ccceEEEEecccc----ceeEeccCCceEE
Confidence 001149999999999999999999999999999999999999999999 7789999999998 8888877 999
Q ss_pred EEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
+|.+.++.++.++.||...|...+| ++.++|++.||.+++|++.+++. ..++.+|+.
T Consensus 531 IW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC--------------------~~tlD~H~D 590 (775)
T KOG0319|consen 531 IWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC--------------------EMTLDAHND 590 (775)
T ss_pred EEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh--------------------hhhhhhccc
Confidence 9999999999999999999988888 89999999999999999998886 678999999
Q ss_pred ceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
.|++++.+|++..+++||.||.+ +|.=.|
T Consensus 591 rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 591 RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99999999999999999999999 996444
No 12
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=6.6e-29 Score=235.55 Aligned_cols=282 Identities=13% Similarity=0.151 Sum_probs=219.6
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+-+.+.++.|+||++.|++++.||.|.|||.-+.++... +++.....-.++++|.+..+
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha---------------------ipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA---------------------IPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE---------------------EecCceeEEEEEECCCCCeE
Confidence 347889999999999999999999999999987765322 12233344557889999999
Q ss_pred EEEecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 146 LLGLSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
++|.-|+...+++..... .... .+...+.+|..++.+..
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~-------------------------------~v~r~l~gHtgylScC~--------- 152 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNV-------------------------------RVSRELAGHTGYLSCCR--------- 152 (343)
T ss_pred EecCcCceeEEEecccccccccc-------------------------------eeeeeecCccceeEEEE---------
Confidence 999988877666654221 1100 11224556677776654
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
|.+ ...+++++.|.+.-+||+++++.. .||..-|. ++++| +++.+++|+-|++.++||++. +...+++.+
T Consensus 153 -f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-~~c~qtF~g-- 227 (343)
T KOG0286|consen 153 -FLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-GQCVQTFEG-- 227 (343)
T ss_pred -EcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-cceeEeecc--
Confidence 445 445788899999999999998765 68887666 99999 999999999999999999999 899999999
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecceeeEEE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W 378 (696)
|...|++++|.|+|..+++|++|++.+++|+...+.+..+... -...|++++||..
T Consensus 228 ------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S----------------- 284 (343)
T KOG0286|consen 228 ------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS----------------- 284 (343)
T ss_pred ------cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc-----------------
Confidence 9999999999999999999999999999999887666554421 0111222222222
Q ss_pred cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
++.+.+|..|.++.+||.+.++. ...+.+|...|.++
T Consensus 285 -----------------------GRlLfagy~d~~c~vWDtlk~e~--------------------vg~L~GHeNRvScl 321 (343)
T KOG0286|consen 285 -----------------------GRLLFAGYDDFTCNVWDTLKGER--------------------VGVLAGHENRVSCL 321 (343)
T ss_pred -----------------------ccEEEeeecCCceeEeeccccce--------------------EEEeeccCCeeEEE
Confidence 55666777788999999888775 45677999999999
Q ss_pred EEcCCCCEEEEEeCCccE-EEE
Q 005459 459 AASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~i-~w~ 479 (696)
..+|||.-|++|+-|.++ +|.
T Consensus 322 ~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 322 GVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EECCCCcEEEecchhHheeecC
Confidence 999999999999999999 984
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=224.55 Aligned_cols=277 Identities=17% Similarity=0.199 Sum_probs=219.2
Q ss_pred ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccC----CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAE----SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~----~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
+.+|.+.|. ++..++ ...+.+++.|.++.+|++.. ++...+.+.+ |.-.|..+..++||++.++++
T Consensus 11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G--------HsH~v~dv~~s~dg~~alS~s 82 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG--------HSHFVSDVVLSSDGNFALSAS 82 (315)
T ss_pred ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec--------cceEecceEEccCCceEEecc
Confidence 368999988 898886 67899999999999999865 2456777888 999999999999999999999
Q ss_pred cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCC-cceE--EEEe
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS-SERV--LIFS 400 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~-~~~v--~~~~ 400 (696)
.|+++++||+.+++..+.|.+| ...|.+++|+||. ..++||+ ++++|+..+...+...... .+.| +.|+
T Consensus 83 wD~~lrlWDl~~g~~t~~f~GH-~~dVlsva~s~dn----~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfs 157 (315)
T KOG0279|consen 83 WDGTLRLWDLATGESTRRFVGH-TKDVLSVAFSTDN----RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFS 157 (315)
T ss_pred ccceEEEEEecCCcEEEEEEec-CCceEEEEecCCC----ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEc
Confidence 9999999999999999999999 6679999999998 8999999 9999999877666555443 6777 5566
Q ss_pred c---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 401 F---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 401 ~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
| .-.+++++.|+++++|++.+-+- ...|.+|+..+..+++||||..+|+||+||.+
T Consensus 158 P~~~~p~Ivs~s~DktvKvWnl~~~~l--------------------~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 158 PNESNPIIVSASWDKTVKVWNLRNCQL--------------------RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAM 217 (315)
T ss_pred CCCCCcEEEEccCCceEEEEccCCcch--------------------hhccccccccEEEEEECCCCCEEecCCCCceEE
Confidence 6 34689999999999999876554 67899999999999999999999999999999
Q ss_pred EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCcccee----EEeecCCccE---
Q 005459 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLL----CRKSLLAKPI--- 547 (696)
Q Consensus 477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~----~~~~~~~~~l--- 547 (696)
+||++.+|-.. ..|....|..+++.++....|...+ ..|++|+.+ .......+ ...+. ..|.
T Consensus 218 LwdL~~~k~ly----sl~a~~~v~sl~fspnrywL~~at~----~sIkIwdl~~~~~v~~l~~d~~g~s~~~-~~~~cls 288 (315)
T KOG0279|consen 218 LWDLNEGKNLY----SLEAFDIVNSLCFSPNRYWLCAATA----TSIKIWDLESKAVVEELKLDGIGPSSKA-GDPICLS 288 (315)
T ss_pred EEEccCCceeE----eccCCCeEeeEEecCCceeEeeccC----CceEEEeccchhhhhhcccccccccccc-CCcEEEE
Confidence 99999987522 1223234779999887665553332 349999875 11111111 10101 1233
Q ss_pred -EEEccCCEEEEEEcCceEEEEEEE
Q 005459 548 -VMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 548 -~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.+.+|..|+.++.|+-|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 334578999999999999999875
No 14
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=1.5e-27 Score=225.09 Aligned_cols=278 Identities=17% Similarity=0.240 Sum_probs=220.9
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeec--------ceecCCCCeEE-EEEcCCCcEEE
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKI--------DKELGSGDAVC-ASIAPEQQILA 272 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~v~-v~~sp~~~~la 272 (696)
.+..+...|+.+. ..+. -..++.++.|+++..|++... +.+.||+..+. ++.++||++..
T Consensus 10 tl~gh~d~Vt~la----------~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~al 79 (315)
T KOG0279|consen 10 TLEGHTDWVTALA----------IKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFAL 79 (315)
T ss_pred eecCCCceEEEEE----------eecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEE
Confidence 3445666676655 3343 456777778888888987532 12378999999 99999999999
Q ss_pred EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-cc
Q 005459 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS-LS 351 (696)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~-~~ 351 (696)
+|+.|+++|+||+.. ++..+.+.+ |+..|.+++||||.+.+++|+.|+++++|++.+.+.. ++..++ .+
T Consensus 80 S~swD~~lrlWDl~~-g~~t~~f~G--------H~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-t~~~~~~~~ 149 (315)
T KOG0279|consen 80 SASWDGTLRLWDLAT-GESTRRFVG--------HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-TIHEDSHRE 149 (315)
T ss_pred eccccceEEEEEecC-CcEEEEEEe--------cCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-EEecCCCcC
Confidence 999999999999998 788999999 9999999999999999999999999999999987544 444433 78
Q ss_pred ceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~ 425 (696)
.|+++.|+|+. ....+++++ ++++|+.++.++...+.+|...+ +.+++ |..+++|+.|+...+||+.+++.
T Consensus 150 WVscvrfsP~~--~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~- 226 (315)
T KOG0279|consen 150 WVSCVRFSPNE--SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN- 226 (315)
T ss_pred cEEEEEEcCCC--CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-
Confidence 89999999984 125677777 99999999999999999999888 67777 88999999999999999998876
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE------ecCCccceeeeEE
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR------VFGDITQEQKIQS 499 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~------~f~~~~~e~~~~v 499 (696)
..+++|+.+|++++|+|+--.|+.|...+..+||..+++.- ..+......+..|
T Consensus 227 --------------------lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~c 286 (315)
T KOG0279|consen 227 --------------------LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPIC 286 (315)
T ss_pred --------------------eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEE
Confidence 24678899999999999988888887777559999998631 1111112223457
Q ss_pred EeEeee--CcEEEEEEeecCCCeEEEEEeeC
Q 005459 500 KGLLWL--GKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 500 ~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
..++|. +..|.++ | .+.-||+|..
T Consensus 287 lslaws~dG~tLf~g-~----td~~irv~qv 312 (315)
T KOG0279|consen 287 LSLAWSADGQTLFAG-Y----TDNVIRVWQV 312 (315)
T ss_pred EEEEEcCCCcEEEee-e----cCCcEEEEEe
Confidence 789998 5566655 3 2356888753
No 15
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=220.03 Aligned_cols=276 Identities=12% Similarity=0.138 Sum_probs=219.5
Q ss_pred ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 253 ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
+.+|.+.+. ++|+|- |.+||+++.|..||+|+...+. .+...+.. +|+..|++++|||.|++||+|+.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~-------~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDD-------GHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccc-------cchheeeeeeecCCCcEEEEeecc
Confidence 468888888 999998 9999999999999999987522 23333333 499999999999999999999999
Q ss_pred CcEEEEEccCC--eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC---CceEEEEecCCcceE--EE
Q 005459 329 RGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERV--LI 398 (696)
Q Consensus 329 g~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v--~~ 398 (696)
.++.||.-.++ +++.+|+|| .+.|.+++|++++ .+|++.+ ++-+|... .+++..++++|...| +.
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGH-EnEVK~Vaws~sG----~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGH-ENEVKCVAWSASG----NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred ceEEEeecCCCceeEEeeeecc-ccceeEEEEcCCC----CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 99999987654 578899999 8889999999999 9999988 77788764 468889999999888 77
Q ss_pred Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 399 FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 399 ~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
++| ...++|+++|+++++|.-..+++ | .+.+++.+|+..|.+++|++.|..|++++.|+++
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~ddd--------------W---~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~ 220 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDD--------------W---ECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVS 220 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCC--------------e---eEEEEecCccceEEEEEecCCCceEEEecCCcceE
Confidence 888 77899999999999998665443 2 2456788999999999999999999999999999
Q ss_pred EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCcc--------ceeEEeecCCccE
Q 005459 477 LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQS--------SLLCRKSLLAKPI 547 (696)
Q Consensus 477 ~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~--------~~~~~~~~~~~~l 547 (696)
+|-..+ +...++...+-.+.|.++.|.++ .++..||+|..+ .-+.. ...|..++.+ +
T Consensus 221 Iw~~~~-------~~~~~~sr~~Y~v~W~~~~IaS~-----ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V 286 (312)
T KOG0645|consen 221 IWRLYT-------DLSGMHSRALYDVPWDNGVIASG-----GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--V 286 (312)
T ss_pred eeeecc-------CcchhcccceEeeeecccceEec-----cCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--E
Confidence 997553 23344444566789996666666 455789999875 22221 1224444444 7
Q ss_pred EEEc-cCCEEEEEEcCceEEEEEEE
Q 005459 548 VMDV-YEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 548 ~~~~-~~~~llv~~~d~~~~l~~~~ 571 (696)
.-++ ..+.|+.++.|+.+++|.++
T Consensus 287 ~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCCCCceeecCCCceEEEEEec
Confidence 7777 47778889999999999875
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.8e-28 Score=259.72 Aligned_cols=238 Identities=18% Similarity=0.265 Sum_probs=211.7
Q ss_pred EEEEEEccCc--ceEEEEEeCCcEEEEeeccCCceeeeeeecc----------------------------------eec
Q 005459 211 IIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----------------------------------KEL 254 (696)
Q Consensus 211 i~~~~~~~~~--~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----------------------------------~~~ 254 (696)
|.-.++.+.. -.++-|++|++.++++..|..+++|.....+ .+.
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 3333444444 4567799999999999999999999865210 013
Q ss_pred CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
||.++|. ++|+|+.++|.++++|++||+|.+++ ..++-..++ |..||+++.|+|-|+++|||+.|++-++
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~G--------H~~PVwdV~F~P~GyYFatas~D~tArL 519 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKG--------HLAPVWDVQFAPRGYYFATASHDQTARL 519 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecC--------CCcceeeEEecCCceEEEecCCCceeee
Confidence 7999999 99999999999999999999999998 777777788 9999999999999999999999999999
Q ss_pred EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeee
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLN 407 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s 407 (696)
|+......+..+.+| .+.|.++.|+|+. .++++|+ +++.||..++..+..+.||..+| ++|++ |+++++
T Consensus 520 Ws~d~~~PlRifagh-lsDV~cv~FHPNs----~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 520 WSTDHNKPLRIFAGH-LSDVDCVSFHPNS----NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred eecccCCchhhhccc-ccccceEEECCcc----cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee
Confidence 999998889999998 8889999999999 9999998 99999999999999999999999 55666 999999
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
|+.|+.+++||+..+.. ...+.+|.+.|.++.||.||..||+||.|..+ +||+..
T Consensus 595 g~ed~~I~iWDl~~~~~--------------------v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSL--------------------VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred cccCCcEEEEEcCCCcc--------------------hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999888775 66788999999999999999999999999999 999864
No 17
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.7e-28 Score=259.86 Aligned_cols=242 Identities=17% Similarity=0.222 Sum_probs=200.6
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~ 279 (696)
+.+|..+|... .|+||.+++++++.|.++++|...+..+. .||..+|+ +.|+|.|-++|+|+.|++
T Consensus 447 L~GH~GPVyg~----------sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGC----------SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeee----------eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCce
Confidence 55667777664 48999999999999999999998876554 79999999 999999999999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s 359 (696)
.++|..+. ..+.+.+.+ |-+.|.|++|.|+.+++|+|+.|++||+||+.+|..+..+.|| .++|.+++||
T Consensus 517 ArLWs~d~-~~PlRifag--------hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH-~~~V~al~~S 586 (707)
T KOG0263|consen 517 ARLWSTDH-NKPLRIFAG--------HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGH-KGPVTALAFS 586 (707)
T ss_pred eeeeeccc-CCchhhhcc--------cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCC-CCceEEEEEc
Confidence 99999987 788888888 9999999999999999999999999999999999999999998 8899999999
Q ss_pred CCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEE-----
Q 005459 360 PNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLV----- 428 (696)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~----- 428 (696)
|+| .++++|. .+++||..+++++..+.+|.+.+..++| +..+++++.|.++++||+.+......+
T Consensus 587 p~G----r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~ 662 (707)
T KOG0263|consen 587 PCG----RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHIST 662 (707)
T ss_pred CCC----ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccccccccccc
Confidence 999 9999998 8999999999999999999999966666 889999999999999998765443111
Q ss_pred EecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE
Q 005459 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA 470 (696)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a 470 (696)
+.++.++... ....+..+|...+.||..+.|..-.-.+++|
T Consensus 663 ~~~~~~~~~~-~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 663 SNSAITQENN-ASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ccccccccCC-CCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 1011111000 0011234566667789999998877556555
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=222.92 Aligned_cols=277 Identities=16% Similarity=0.148 Sum_probs=219.2
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG 278 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg 278 (696)
.+.+|...|.+|. +++|++.++++++|+.+-+||..+..+. .-....|. +||+|.|+++|.|+-|+
T Consensus 50 ~LkGH~~Ki~~~~----------ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN 119 (343)
T KOG0286|consen 50 TLKGHLNKIYAMD----------WSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN 119 (343)
T ss_pred EecccccceeeeE----------ecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc
Confidence 4567778888887 6788888888888888888998765443 12245565 99999999999999999
Q ss_pred eEEEEEccCC--C---ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccce
Q 005459 279 VVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSI 353 (696)
Q Consensus 279 ~v~vw~~~~~--~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v 353 (696)
...||++... . ...+.+.+ |++-+.|+.|-+|+ .|++|+.|.+..+||+++++.+..+.+| ...|
T Consensus 120 ~Csiy~ls~~d~~g~~~v~r~l~g--------HtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~GH-~gDV 189 (343)
T KOG0286|consen 120 KCSIYPLSTRDAEGNVRVSRELAG--------HTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHGH-TGDV 189 (343)
T ss_pred eeEEEecccccccccceeeeeecC--------ccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecCC-cccE
Confidence 9999999852 1 23455666 99999999999865 6889999999999999999999999999 7889
Q ss_pred ecccccC-CCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459 354 SSPIVKP-NQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (696)
Q Consensus 354 ~~~~~sp-~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~ 426 (696)
.++.++| ++ +.++||+ ..++||.+.+....++.+|...| +.|-| +..+++|+.|++.+++|+....+ +
T Consensus 190 ~slsl~p~~~----ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~ 264 (343)
T KOG0286|consen 190 MSLSLSPSDG----NTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-L 264 (343)
T ss_pred EEEecCCCCC----CeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-E
Confidence 9999999 55 8899987 89999999999999999999999 55555 88999999999999999876544 2
Q ss_pred EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee
Q 005459 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL 505 (696)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~ 505 (696)
.+|.. ..-+.+|.+++||..|++|..|..|..+ +||...++-.. .-..||+.+.+.++.=.
T Consensus 265 a~ys~-----------------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg-~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 265 AVYSH-----------------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG-VLAGHENRVSCLGVSPD 326 (343)
T ss_pred eeecc-----------------CcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE-EeeccCCeeEEEEECCC
Confidence 22221 1235689999999999999999999999 99988775321 11246666444455444
Q ss_pred CcEEEEEEeecCCCeEEEEEee
Q 005459 506 GKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 506 ~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
+-.+.++ +-+..||+|.
T Consensus 327 G~av~Tg-----SWDs~lriW~ 343 (343)
T KOG0286|consen 327 GMAVATG-----SWDSTLRIWA 343 (343)
T ss_pred CcEEEec-----chhHheeecC
Confidence 4444444 5567899984
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=6.5e-27 Score=234.98 Aligned_cols=321 Identities=17% Similarity=0.214 Sum_probs=237.3
Q ss_pred hcccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccc----cceeEEEe--
Q 005459 66 REGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAE----KGLSVSNI-- 138 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~v~~~-- 138 (696)
+..++...+|+|-.. .+|+++.+-..++|++......... + +.++..+...+ ....|+++
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q----------~~lrh~~~~~~~s~~~nkdVT~L~W 243 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---Q----------LVLRHCIREGGKSVPSNKDVTSLDW 243 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---h----------hhhhhhhhhhcccCCccCCcceEEe
Confidence 456789999999777 9999999999999999741110000 0 00011110011 11234555
Q ss_pred eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEcc
Q 005459 139 VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCL 218 (696)
Q Consensus 139 ~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 218 (696)
..+|..|++|..+|.+++|.-++.... .+..|+.+|.++.
T Consensus 244 n~~G~~LatG~~~G~~riw~~~G~l~~-------------------------------------tl~~HkgPI~slK--- 283 (524)
T KOG0273|consen 244 NNDGTLLATGSEDGEARIWNKDGNLIS-------------------------------------TLGQHKGPIFSLK--- 283 (524)
T ss_pred cCCCCeEEEeecCcEEEEEecCchhhh-------------------------------------hhhccCCceEEEE---
Confidence 455889999999999998655544322 2335677888877
Q ss_pred CcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCe-EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459 219 PMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDA-VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 219 ~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~-v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~ 294 (696)
...+|.++++++-|+++-+||..+++.. ..|+.+ .-|.|-. ..-+|+.+.||.|+||.+.. ..++.+
T Consensus 284 -------Wnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~-~~P~~t 354 (524)
T KOG0273|consen 284 -------WNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE-DRPVKT 354 (524)
T ss_pred -------EcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecC-CCccee
Confidence 5678889999999999999998776543 345544 3355543 45689999999999999988 889999
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceeccee
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~ 374 (696)
+.+ |.++|.+|.|.|.|..|++++.|+|+++|+.....+.+.|..| ...|..+.++|+++-+..+..
T Consensus 355 ~~G--------H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-skei~t~~wsp~g~v~~n~~~---- 421 (524)
T KOG0273|consen 355 FIG--------HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-SKEIYTIKWSPTGPVTSNPNM---- 421 (524)
T ss_pred eec--------ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-ccceeeEeecCCCCccCCCcC----
Confidence 999 9999999999999999999999999999999888888899988 667888888888732111111
Q ss_pred eEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 375 MMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
+..+++++.|+++++||+..+.. ..++..|+.|
T Consensus 422 ---------------------------~~~l~sas~dstV~lwdv~~gv~--------------------i~~f~kH~~p 454 (524)
T KOG0273|consen 422 ---------------------------NLMLASASFDSTVKLWDVESGVP--------------------IHTLMKHQEP 454 (524)
T ss_pred ---------------------------CceEEEeecCCeEEEEEccCCce--------------------eEeeccCCCc
Confidence 23467888999999999988776 5678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEE
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~ 512 (696)
|++++|||+|+|+|+|+.||.+ +|+.++++ +|..- + ..-.+..++|. ++.|.++
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~-~-~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSY-Q-GTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccccchh--eeEee-c-CCCeEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999 99999986 22211 1 11125679996 4455543
No 20
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=3.6e-28 Score=239.89 Aligned_cols=265 Identities=14% Similarity=0.211 Sum_probs=223.1
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeec--c-eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI--D-KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~--~-~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.++|+||.+++++..|...+|+.... + .++.|+.+|+ +.|++++.++++|..+|.|++|+... ..++.+..
T Consensus 102 v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnVk~~~a-- 177 (464)
T KOG0284|consen 102 VRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNVKIIQA-- 177 (464)
T ss_pred EEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhhHHhhH--
Confidence 457899999999999999999997532 2 2378999998 99999999999999999999999874 55666666
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
.|...|++++|||+...++++++||+|+|||..-.+....|++||- .|.++.++|.. ..+++|+ .++
T Consensus 178 -----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-dVksvdWHP~k----gLiasgskDnlVK 247 (464)
T KOG0284|consen 178 -----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-DVKSVDWHPTK----GLIASGSKDNLVK 247 (464)
T ss_pred -----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC-CcceeccCCcc----ceeEEccCCceeE
Confidence 2558999999999999999999999999999988888888999954 59999999987 7888888 899
Q ss_pred EEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 377 QWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
+||+++++++.++.+|+..|.++.| +..++|+|.|.+++++|+...++ ...|.+|..
T Consensus 248 lWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE--------------------l~~~r~Hkk 307 (464)
T KOG0284|consen 248 LWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE--------------------LFTYRGHKK 307 (464)
T ss_pred eecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH--------------------HHHhhcchh
Confidence 9999999999999999999977666 88999999999999999886555 568899999
Q ss_pred ceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 454 PVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 454 ~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.+++++|+|-- ..+++||.||.+ +|.+...+ -........+-.|..|.|+ +++|.++ +++..+|||.|.
T Consensus 308 dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tg-----snd~t~rfw~r~ 380 (464)
T KOG0284|consen 308 DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATG-----SNDRTVRFWTRN 380 (464)
T ss_pred hheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeec-----CCCcceeeeccC
Confidence 99999999964 578999999999 99887321 1222222334457899997 6777765 677899999996
No 21
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.4e-25 Score=233.59 Aligned_cols=263 Identities=17% Similarity=0.240 Sum_probs=211.8
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
..+.+++|..++++++ .+.+++|+..+.++. .....+.|..|-|.++++++|..+|.+.|||+.. ..++.+++.
T Consensus 377 Rsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS-~~l~Eti~A-- 452 (888)
T KOG0306|consen 377 RSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLAS-ASLVETIRA-- 452 (888)
T ss_pred eEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeeh-hhhhhhhhc--
Confidence 3455788877777654 456999998877765 3334667789999999999999999999999998 788888888
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-----CeeE--------EEeecccccceecccccCCCCCCc
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-----CRLM--------STIRQISLSSISSPIVKPNQDCKY 366 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-----~~~~--------~~l~~~~~~~v~~~~~sp~~~~~~ 366 (696)
|.|.+++|+-+||++.+++|+.|++|++||..- +..- .+|+- .+.|.++.+|||+
T Consensus 453 ------HdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel--~ddvL~v~~Spdg---- 520 (888)
T KOG0306|consen 453 ------HDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL--EDDVLCVSVSPDG---- 520 (888)
T ss_pred ------cccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec--cccEEEEEEcCCC----
Confidence 999999999999999999999999999999731 1111 12221 3569999999999
Q ss_pred cceecce---eeEEEcCCCceEEEEecCCcceEEE--Eec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459 367 EPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI--FSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (696)
Q Consensus 367 ~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~--~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (696)
.+++-|- ++.++-.++-+.+..+-||.-+|.+ ++| ++.++|+|.|.++++|-+..|+.
T Consensus 521 k~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC---------------- 584 (888)
T KOG0306|consen 521 KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC---------------- 584 (888)
T ss_pred cEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchh----------------
Confidence 8888765 9999999999999999999999955 556 89999999999999999999887
Q ss_pred EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEee--eCcEEEEEEeec
Q 005459 441 HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLW--LGKIIVVCNYID 516 (696)
Q Consensus 441 ~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w--~~~~lv~~~~~~ 516 (696)
..++.+|...|.++.|-|+...+.++|+||.+ -||-.. .+.+.. ..|. ..|++++- .+.+++.+
T Consensus 585 ----HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~--~ev~cLav~~~G~~vvs~---- 652 (888)
T KOG0306|consen 585 ----HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHH--SEVWCLAVSPNGSFVVSS---- 652 (888)
T ss_pred ----hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccch--heeeeeEEcCCCCeEEec----
Confidence 67889999999999999999999999999999 998654 222211 1122 23555544 46688876
Q ss_pred CCCeEEEEEeeCC
Q 005459 517 SSNTYELLFYPRY 529 (696)
Q Consensus 517 ~~~~~~lr~y~~~ 529 (696)
+.++.||+|.+.
T Consensus 653 -shD~sIRlwE~t 664 (888)
T KOG0306|consen 653 -SHDKSIRLWERT 664 (888)
T ss_pred -cCCceeEeeecc
Confidence 667899999986
No 22
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.6e-25 Score=233.40 Aligned_cols=490 Identities=11% Similarity=0.126 Sum_probs=323.7
Q ss_pred EeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCC
Q 005459 28 KVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG 107 (696)
Q Consensus 28 s~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~ 107 (696)
+..|++.|+..-..|.+||.+ .+. ..+.........++.+++=+||.-.||+|-.||.|+||++..+...
T Consensus 31 ~~~Gr~va~~a~E~vn~WdlR-tge----~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~----- 100 (888)
T KOG0306|consen 31 SGKGRAVAVSALEQVNIWDLR-TGE----IEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEIL----- 100 (888)
T ss_pred cCCCcEEEEeccccEeEEeee-cch----hhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCcee-----
Confidence 344889988777789999996 432 1111111222357788888899999999999999999999754321
Q ss_pred CCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (696)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s 185 (696)
+.+.++...|+++ ...|.+++.|+.|+.|.+|+.-++... +.+. .+...+...-|.
T Consensus 101 ------------------~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-~rL~---GHkd~iT~~~F~ 158 (888)
T KOG0306|consen 101 ------------------ITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-FRLR---GHKDSITQALFL 158 (888)
T ss_pred ------------------eeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-EEee---cchHHHhHHhcc
Confidence 2234555566644 556799999999999988665555432 2221 112223333333
Q ss_pred CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec--c-----e------
Q 005459 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI--D-----K------ 252 (696)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~--~-----~------ 252 (696)
.+..+..+...+.+.+.+....+.++..+..+......+++.+ +.++++..|..+++|++... + .
T Consensus 159 ~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~ 236 (888)
T KOG0306|consen 159 NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLR 236 (888)
T ss_pred CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeecc
Confidence 3222222222223444454555555555555555555555544 78888888999999998311 0 0
Q ss_pred ----ecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc-------------------------------------e
Q 005459 253 ----ELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS-------------------------------------L 291 (696)
Q Consensus 253 ----~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~-------------------------------------~ 291 (696)
.++-...+.++..++.++++.-+.|..+.+|.+....+ .
T Consensus 237 G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ 316 (888)
T KOG0306|consen 237 GTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLET 316 (888)
T ss_pred ceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHh
Confidence 02223455566777777777777777777777644000 0
Q ss_pred e------------------eE---Eee-------ccC--CC-----------CCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 292 I------------------RT---VSL-------YDW--GY-----------SMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 292 ~------------------~~---~~~-------~~~--~~-----------~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
+ .+ +.. .+. +. ..+|...|+++++|.|...++||+. +.
T Consensus 317 ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~S 395 (888)
T KOG0306|consen 317 IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ES 395 (888)
T ss_pred eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-Cc
Confidence 0 00 000 000 00 1269999999999999999999987 79
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---cee
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKC 404 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~ 404 (696)
+++|+..+.+++.++.-. .+-+..|-|.+ .+++.|. ...+++.....++-+.++|++.+|.++. ++.
T Consensus 396 ikiWn~~t~kciRTi~~~---y~l~~~Fvpgd----~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g 468 (888)
T KOG0306|consen 396 IKIWNRDTLKCIRTITCG---YILASKFVPGD----RYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKG 468 (888)
T ss_pred EEEEEccCcceeEEeccc---cEEEEEecCCC----ceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCc
Confidence 999999999999998743 57778888887 8888776 7778999888888888899999976655 888
Q ss_pred eeeccCCCCceeeeeeecCC------eEEEEecC--------------CCCcc---------------eeEEeecCeeee
Q 005459 405 CLNRGVSGMTYARQVIYGED------RLLVVQSE--------------DTDEL---------------KILHLNLPVSYI 449 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~------~~~~~~~~--------------~~~~~---------------~w~~~~~~~~~~ 449 (696)
.++++.|.++++|++..-.+ ++ +.-.+ -.|+. ....++.-.++.
T Consensus 469 ~vT~saDktVkfWdf~l~~~~~gt~~k~-lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLY 547 (888)
T KOG0306|consen 469 FVTGSADKTVKFWDFKLVVSVPGTQKKV-LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY 547 (888)
T ss_pred eEEecCCcEEEEEeEEEEeccCccccee-eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeec
Confidence 99999999999999864322 11 11100 01111 113444555677
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE--ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEE
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR--VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELL 524 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~--~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr 524 (696)
||.-||.|+.+|||++.+++||.|..+ +|-++=|... .|. |..+ |..+.+. .+...+| +++..++
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA---HdDS--vm~V~F~P~~~~FFt~-----gKD~kvK 617 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA---HDDS--VMSVQFLPKTHLFFTC-----GKDGKVK 617 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc---ccCc--eeEEEEcccceeEEEe-----cCcceEE
Confidence 999999999999999999999999999 9988766543 221 2222 3344443 3344444 5778999
Q ss_pred EeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459 525 FYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 525 ~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
-|+-++++.-..+..+-..-.-++++++|++++.++.|.++++|..
T Consensus 618 qWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 618 QWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred eechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 9988755543344444333445899999999999999999999974
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.4e-26 Score=213.77 Aligned_cols=269 Identities=12% Similarity=0.234 Sum_probs=217.5
Q ss_pred CCcccEEEEEEccCcceEEEEEeC-CcEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEec
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSN-GQLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~d-G~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~ 276 (696)
+++..+..++ +.|- |.++++++.|+.+++|+...+..+ .+|..+|+ +||+|.|++||+|+-
T Consensus 12 gh~~r~W~~a----------whp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF 81 (312)
T KOG0645|consen 12 GHKDRVWSVA----------WHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF 81 (312)
T ss_pred CCCCcEEEEE----------eccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec
Confidence 3444566655 4444 889999999999999998743222 47999999 999999999999999
Q ss_pred CCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC---CeeEEEeecccccc
Q 005459 277 RGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG---CRLMSTIRQISLSS 352 (696)
Q Consensus 277 dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~---~~~~~~l~~~~~~~ 352 (696)
|.++.||.-.+. -+++.++.+ |...|.|++||++|++||++++|+.|-+|.+.. ..+...|++| +..
T Consensus 82 D~t~~Iw~k~~~efecv~~lEG--------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqD 152 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEG--------HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQD 152 (312)
T ss_pred cceEEEeecCCCceeEEeeeec--------cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-ccc
Confidence 999999986541 367888888 999999999999999999999999999999964 3467788888 667
Q ss_pred eecccccCCCCCCccceecce---eeEEEcCC---CceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecC
Q 005459 353 ISSPIVKPNQDCKYEPLMSGT---SMMQWDEY---GYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGE 423 (696)
Q Consensus 353 v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~---~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~ 423 (696)
|..+.|+|.. ..|+|++ ++++|.-+ ..++..++.+|...|+.+.| +..+++++.|+++++|....+-
T Consensus 153 VK~V~WHPt~----dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 153 VKHVIWHPTE----DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred ccEEEEcCCc----ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 9999999988 8899888 99999755 46789999999999988777 7789999999999999854221
Q ss_pred CeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC----CceEecCCccceeeeE
Q 005459 424 DRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRVFGDITQEQKIQ 498 (696)
Q Consensus 424 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s----g~w~~f~~~~~e~~~~ 498 (696)
. .-|.++++.++|. + -.||+||.|+.+ +|.-.. ..|+++....+.++..
T Consensus 229 ~------------------------~~~sr~~Y~v~W~-~-~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~d 282 (312)
T KOG0645|consen 229 S------------------------GMHSRALYDVPWD-N-GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVD 282 (312)
T ss_pred c------------------------hhcccceEeeeec-c-cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccc
Confidence 1 2467889999998 4 479999999999 997665 4688776555555556
Q ss_pred EEeEeeeC---cEEEEEEeecCCCeEEEEEeeC
Q 005459 499 SKGLLWLG---KIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 499 v~~~~w~~---~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
|..+.|.+ +.|+.+ ++++++++|..
T Consensus 283 VNsV~w~p~~~~~L~s~-----~DDG~v~~W~l 310 (312)
T KOG0645|consen 283 VNSVQWNPKVSNRLASG-----GDDGIVNFWEL 310 (312)
T ss_pred cceEEEcCCCCCceeec-----CCCceEEEEEe
Confidence 88999986 455555 55689999965
No 24
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=4e-25 Score=228.53 Aligned_cols=408 Identities=15% Similarity=0.158 Sum_probs=271.0
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~ 144 (696)
...+.++.|.|.-..+..+--+|.+.|||.++...- .+ +...+.+|. .|....+.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmV-------------ks----------feV~~~PvRa~kfiaRknW 69 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMV-------------KS----------FEVSEVPVRAAKFIARKNW 69 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceee-------------ee----------eeecccchhhheeeeccce
Confidence 356789999999999999999999999999754311 00 111222232 33445678
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
+++|++|..|+++..+..... .....|..+|++ +
T Consensus 70 iv~GsDD~~IrVfnynt~ekV------------------------------------~~FeAH~DyIR~----------i 103 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKV------------------------------------KTFEAHSDYIRS----------I 103 (794)
T ss_pred EEEecCCceEEEEecccceee------------------------------------EEeeccccceee----------e
Confidence 999999999999876532111 011233445555 4
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeec----ceecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
++.|.--.++++++|.++++|+-... +...||+.-|. ++||| |.+.+|++|-|+||+||++.. ..+..++.+
T Consensus 104 avHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-~~~nfTl~g- 181 (794)
T KOG0276|consen 104 AVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-PHPNFTLEG- 181 (794)
T ss_pred eecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-CCCceeeec-
Confidence 57788888999999999999986532 22378999888 99999 688999999999999999987 677888999
Q ss_pred cCCCCCCCCCCeEEEEECCCC--CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459 299 DWGYSMDDTGPVSCIAWTPDN--SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg--~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--- 373 (696)
|...|+|+.|-|-| -+|++|++|.+++|||.++..|+.+|.|| .+.|+.+.|+|.- ..++||+
T Consensus 182 -------HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGH-t~Nvs~v~fhp~l----piiisgsEDG 249 (794)
T KOG0276|consen 182 -------HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGH-TNNVSFVFFHPEL----PIIISGSEDG 249 (794)
T ss_pred -------cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcc-cccceEEEecCCC----cEEEEecCCc
Confidence 99999999998844 59999999999999999999999999999 7779999999987 7888998
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCccee-----------
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI----------- 439 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w----------- 439 (696)
++++|...++++..++.-.-+++|++.. ...++.|...+.+.+ .+-+++..+.+-. ...+.|
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~---~gKIiwa~~~ei~~~~~ 325 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDS---NGKIIWAVHSEIQAVNL 325 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecC---CccEEEEcCceeeeeec
Confidence 9999999999998888777788988875 333444444444322 2222221110000 001122
Q ss_pred EEe----------ecCeee--ecCC-CceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCcc--------------
Q 005459 440 LHL----------NLPVSY--ISQN-WPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDIT-------------- 492 (696)
Q Consensus 440 ~~~----------~~~~~~--~~~~-~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~-------------- 492 (696)
..+ ++|..- ++.. ---..++.||+|++++++|..-.++|....=|-|.|+...
T Consensus 326 ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avR 405 (794)
T KOG0276|consen 326 KSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVR 405 (794)
T ss_pred eeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEeeehhhcccccceeEEEcCCCCeEEEE
Confidence 000 011100 0100 0124578899999999988665668876443333343211
Q ss_pred -------------ceeeeEEE--eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEE
Q 005459 493 -------------QEQKIQSK--GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYIL 557 (696)
Q Consensus 493 -------------~e~~~~v~--~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ll 557 (696)
..+.+... ..-.++..|+.++. +..++||+-+ +..+..+.++.+.-+..+-+|+.++
T Consensus 406 es~~~vki~knfke~ksi~~~~~~e~i~gg~Llg~~s-----s~~~~fydW~---~~~lVrrI~v~~k~v~w~d~g~lVa 477 (794)
T KOG0276|consen 406 ESNGNVKIFKNFKEHKSIRPDMSAEGIFGGPLLGVRS-----SDFLCFYDWE---SGELVRRIEVTSKHVYWSDNGELVA 477 (794)
T ss_pred ecCCceEEEecceeccccccccceeeecCCceEEEEe-----CCeEEEEEcc---cceEEEEEeeccceeEEecCCCEEE
Confidence 01111111 11123555555532 2578888754 4445666667776677776666666
Q ss_pred EEEcCceEEEEEE
Q 005459 558 VTYRPFDVHIFHV 570 (696)
Q Consensus 558 v~~~d~~~~l~~~ 570 (696)
.++ |-+..++.+
T Consensus 478 i~~-d~Sfyil~~ 489 (794)
T KOG0276|consen 478 IAG-DDSFYILKF 489 (794)
T ss_pred EEe-cCceeEEEe
Confidence 644 334444444
No 25
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=235.43 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=220.5
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCe
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~ 144 (696)
.-.+..|.|.|+|+.|++++..|.+.+|+.. .+.++.....++..|+++ +.++..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~-----------------------~fnFEtilQaHDs~Vr~m~ws~~g~w 152 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGT-----------------------SFNFETILQAHDSPVRTMKWSHNGTW 152 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCc-----------------------eeeHHHHhhhhcccceeEEEccCCCE
Confidence 3456789999999999999999999999984 223333345666666655 667889
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
|+.|..+|.|+. |+...+... .....+...|++++
T Consensus 153 miSgD~gG~iKy--WqpnmnnVk----------------------------------~~~ahh~eaIRdla--------- 187 (464)
T KOG0284|consen 153 MISGDKGGMIKY--WQPNMNNVK----------------------------------IIQAHHAEAIRDLA--------- 187 (464)
T ss_pred EEEcCCCceEEe--cccchhhhH----------------------------------HhhHhhhhhhheec---------
Confidence 999999999987 654433211 01123446688866
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
|+|+...+++++.|+++++||...++. +.||.--+. ++|+|.-.+||+|+.|..|++||.++ ++++.++.+
T Consensus 188 -fSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-g~cl~tlh~--- 262 (464)
T KOG0284|consen 188 -FSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-GSCLATLHG--- 262 (464)
T ss_pred -cCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-cchhhhhhh---
Confidence 677777888899999999999886543 478875555 99999999999999999999999998 899999999
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcC
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (696)
|+..|..+.|+|+|++|+++++|..++++|+...+.+.++++| ...|+++.++|-. +-
T Consensus 263 -----HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H-kkdv~~~~WhP~~----~~------------ 320 (464)
T KOG0284|consen 263 -----HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH-KKDVTSLTWHPLN----ES------------ 320 (464)
T ss_pred -----ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc-hhhheeecccccc----cc------------
Confidence 9999999999999999999999999999999987778888888 6667777777764 21
Q ss_pred CCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEE
Q 005459 381 YGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAA 460 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~ 460 (696)
.+.+++.|+.+..|.+...+. ++.--.+|...|+++++
T Consensus 321 -----------------------lftsgg~Dgsvvh~~v~~~~p-------------------~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 321 -----------------------LFTSGGSDGSVVHWVVGLEEP-------------------LGEIPPAHDGEIWSLAY 358 (464)
T ss_pred -----------------------ceeeccCCCceEEEecccccc-------------------ccCCCcccccceeeeec
Confidence 245678888888888763332 23333478899999999
Q ss_pred cCCCCEEEEEeCCccE-EEEc
Q 005459 461 SKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 461 s~dG~~la~ag~dG~i-~w~~ 480 (696)
.|-|..||+|+.|.++ .|..
T Consensus 359 hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 359 HPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cccceeEeecCCCcceeeecc
Confidence 9999999999999999 8864
No 26
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=6.5e-25 Score=229.50 Aligned_cols=323 Identities=15% Similarity=0.124 Sum_probs=228.9
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcC------------CCcEEEEEecCCeEEEEE
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAP------------EQQILAVGTRRGVVELYD 284 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp------------~~~~la~g~~dg~v~vw~ 284 (696)
+.|.+....+.+..+|..+.+||+.+..+. ..|...++ +..-| .+ -+.+++.||+||+|+
T Consensus 330 ~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~ 408 (1080)
T KOG1408|consen 330 CQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWD 408 (1080)
T ss_pred EEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEee
Confidence 556666667777778888888998766543 33555554 43322 23 378999999999999
Q ss_pred ccCCCceeeEEe-------eccCCC----------------------CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 285 LAESASLIRTVS-------LYDWGY----------------------SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 285 ~~~~~~~~~~~~-------~~~~~~----------------------~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
++. +..-.+++ ..+.+| ..+..-.+++++.||||++||+|..-|+++|++
T Consensus 409 l~~-ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 409 LAF-CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccc-ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 976 21111111 111111 113455799999999999999999999999999
Q ss_pred ccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC-CCceEEEEecCCcceEEEEec---c--eeee
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE-YGYRLYAIEEGSSERVLIFSF---G--KCCL 406 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~-~~~~l~~~~~~~~~~v~~~~~---~--~~~~ 406 (696)
+..-+.++.+..| .+.|.++.|+... ...+.+++++ -+.++|. ..|.++.++.+|...|..+.| + ..++
T Consensus 488 Lq~l~~~~~~eAH-esEilcLeyS~p~-~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 488 LQELEYTCFMEAH-ESEILCLEYSFPV-LTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred ehhhhhhhheecc-cceeEEEeecCch-hhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 9999999999888 8889999987532 2337788888 5667887 467888899999999988888 3 6788
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
+++.|..+.+.......+..++.++ +-......++.+++.|.-+++++++.|..| +|++++||.
T Consensus 566 scGADksimFr~~qk~~~g~~f~r~---------------t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 566 SCGADKSIMFRVNQKASSGRLFPRH---------------TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred eccCchhhheehhccccCceecccc---------------ccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 9999998876654433332211111 111123358899999999999999999999 999999986
Q ss_pred -EecCCc-cceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459 486 -RVFGDI-TQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (696)
Q Consensus 486 -~~f~~~-~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~ 561 (696)
|.|... .+|.+..-..+.=.+.++++.|.+ ..|.||+.. .+-.++..|.+.+.. +-+..+-.+|+.++.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~atScsd-----ktl~~~Df~sgEcvA~m~GHsE~VTG--~kF~nDCkHlISvsg 703 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLATSCSD-----KTLCFVDFVSGECVAQMTGHSEAVTG--VKFLNDCKHLISVSG 703 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEEeecC-----CceEEEEeccchhhhhhcCcchheee--eeecccchhheeecC
Confidence 456543 233332222455567778777653 577787764 455567889988877 777778899999898
Q ss_pred CceEEEEEEEE
Q 005459 562 PFDVHIFHVKL 572 (696)
Q Consensus 562 d~~~~l~~~~~ 572 (696)
|+-|-+|.+-.
T Consensus 704 DgCIFvW~lp~ 714 (1080)
T KOG1408|consen 704 DGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECch
Confidence 99888887653
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=6.8e-25 Score=203.83 Aligned_cols=279 Identities=12% Similarity=0.196 Sum_probs=211.4
Q ss_pred EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCC
Q 005459 33 LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPS 111 (696)
Q Consensus 33 lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~ 111 (696)
+||+++ |.+|++|.+. .+.....+.- ..+.+..++..||++.||++... .||+||+.+.+..
T Consensus 12 iLvsA~YDhTIRfWqa~-tG~C~rTiqh------~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~--------- 74 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQAL-TGICSRTIQH------PDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPN--------- 74 (311)
T ss_pred EEEeccCcceeeeeehh-cCeEEEEEec------CccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCC---------
Confidence 788886 7899999996 5554444322 23667899999999999998754 7999999876531
Q ss_pred CceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcc
Q 005459 112 GLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLA 191 (696)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~ 191 (696)
.+.+. +. ......+..|..++..|+.|+.||++++|+... ....
T Consensus 75 --Pv~t~----e~----h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~--~~~q------------------------ 118 (311)
T KOG0315|consen 75 --PVATF----EG----HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS--LSCQ------------------------ 118 (311)
T ss_pred --ceeEE----ec----cCCceEEEEEeecCeEEEecCCCceEEEEeccC--cccc------------------------
Confidence 11111 11 112334456788999999999999999954432 1100
Q ss_pred cccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce----ecCCCCeEE-EEEcC
Q 005459 192 SVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAP 266 (696)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~v~-v~~sp 266 (696)
-...+.++|.++. ..|+...++++-+++.+++||+....+ .......+. +++.|
T Consensus 119 -----------R~~~~~spVn~vv----------lhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 119 -----------RNYQHNSPVNTVV----------LHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP 177 (311)
T ss_pred -----------hhccCCCCcceEE----------ecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC
Confidence 1123345566644 678888888888899999999875422 234445666 99999
Q ss_pred CCcEEEEEecCCeEEEEEccCCC-----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-e
Q 005459 267 EQQILAVGTRRGVVELYDLAESA-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-R 340 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~-----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~ 340 (696)
||++++.+..-|+..+|++-... .++..++. |++-+..+.+|||+++||+++.|++++||++.+. +
T Consensus 178 dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--------h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~k 249 (311)
T KOG0315|consen 178 DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--------HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFK 249 (311)
T ss_pred CCcEEEEecCCccEEEEEccCCCccccceEhhheec--------ccceEEEEEECCCCcEEEeecCCceEEEEecCCcee
Confidence 99999999999999999986521 23444555 9999999999999999999999999999999988 6
Q ss_pred eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEE
Q 005459 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLI 398 (696)
Q Consensus 341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~ 398 (696)
+...+++| +..+..++||.++ +++++|+ ..++|++..++.+....+|....++
T Consensus 250 le~~l~gh-~rWvWdc~FS~dg----~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc 305 (311)
T KOG0315|consen 250 LELVLTGH-QRWVWDCAFSADG----EYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC 305 (311)
T ss_pred eEEEeecC-CceEEeeeeccCc----cEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence 66777777 7899999999999 9999998 8999999999999999888765543
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=231.48 Aligned_cols=350 Identities=13% Similarity=0.119 Sum_probs=261.6
Q ss_pred cceeEEEee--eCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCc
Q 005459 131 KGLSVSNIV--SDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (696)
Q Consensus 131 ~~~~v~~~~--~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 208 (696)
+...|.++. |..-.++++..+|.+.+|+.+.+..
T Consensus 12 rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtm-------------------------------------------- 47 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTM-------------------------------------------- 47 (794)
T ss_pred cCCceeeeecCCCCceEEEeeecCeeEEEeccccee--------------------------------------------
Confidence 444565554 4446799999999999965543221
Q ss_pred ccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEE
Q 005459 209 SAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYD 284 (696)
Q Consensus 209 ~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~ 284 (696)
+++++.+......+.|-+.-+.++++++|..+++.+..+.++. ..|.+-++ ++++|...++.+++.|-+|++||
T Consensus 48 --VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~ 125 (794)
T KOG0276|consen 48 --VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWD 125 (794)
T ss_pred --eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEee
Confidence 3333333333334556677788999999999999998887664 57899888 99999999999999999999999
Q ss_pred ccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCC
Q 005459 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQD 363 (696)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~ 363 (696)
.+..-.+.+++.+ |+--|.+++|.| |.+.+||++-|+||+||++....+..||++| ...|+++.+-+-+
T Consensus 126 we~~wa~~qtfeG--------H~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gH-ekGVN~Vdyy~~g- 195 (794)
T KOG0276|consen 126 WENEWACEQTFEG--------HEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGH-EKGVNCVDYYTGG- 195 (794)
T ss_pred ccCceeeeeEEcC--------cceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeecc-ccCcceEEeccCC-
Confidence 9987788999999 999999999999 8899999999999999999999999999998 8889999998876
Q ss_pred CCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc
Q 005459 364 CKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (696)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 437 (696)
.+.+++||. ++++||..+..++.+++||...| ..|.+ -..++||+.||++++|.-.+-..
T Consensus 196 -dkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l------------- 261 (794)
T KOG0276|consen 196 -DKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL------------- 261 (794)
T ss_pred -CcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------
Confidence 346788888 99999999999999999999998 55666 66789999999999998654332
Q ss_pred eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeEEE-eEeeeCcEEEEEEeec
Q 005459 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQSK-GLLWLGKIIVVCNYID 516 (696)
Q Consensus 438 ~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~v~-~~~w~~~~lv~~~~~~ 516 (696)
-.++.-.-..|++++-.+.++.+|+|...|.+..++- .+...-.+... .+.|..+.-|.+....
T Consensus 262 -------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lg--------reeP~vsMd~~gKIiwa~~~ei~~~~~k 326 (794)
T KOG0276|consen 262 -------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLG--------REEPAVSMDSNGKIIWAVHSEIQAVNLK 326 (794)
T ss_pred -------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEEEcc--------CCCCceeecCCccEEEEcCceeeeeece
Confidence 2233334457999999999999999999999865542 22233334444 4889765444432211
Q ss_pred C-CCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459 517 S-SNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 517 ~-~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
. ....++. +-+ +|.-.-+. ..++..+.+..+|+|.+++| |.|++.+||.
T Consensus 327 s~~~~~ev~--DgErL~LsvKeLg-s~eiyPq~L~hsPNGrfV~V-cgdGEyiIyT 378 (794)
T KOG0276|consen 327 SVGAQKEVT--DGERLPLSVKELG-SVEIYPQTLAHSPNGRFVVV-CGDGEYIIYT 378 (794)
T ss_pred eccCccccc--CCccccchhhhcc-ccccchHHhccCCCCcEEEE-ecCccEEEEE
Confidence 1 1111221 111 22211122 22344557899999998888 7799999995
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=6.7e-25 Score=220.56 Aligned_cols=316 Identities=15% Similarity=0.200 Sum_probs=214.4
Q ss_pred CceEEEEEeCCc-EEEEE-ccCeEEEeecCCceeeEEEe---ecCh-----HHHhhcccccEEEEcCCCcEEEEEecCcE
Q 005459 21 SQQIIYFKVNNG-LLLIA-SPCHIELWSSSQHKVRLGKY---KRDS-----ESVQREGENLQAVWSPDTKLIAVVTSSLY 90 (696)
Q Consensus 21 ~~~~v~fs~dg~-lla~~-~~~~v~iW~~~~~~~~l~~~---~r~~-----~sl~~~G~~~~v~wsPDg~~lav~t~dg~ 90 (696)
++-+-+.+|-.. +||+. .+.+-++|+.. ...-.+.. -|.. ++....-.+++++|+.||+.||++..+|.
T Consensus 180 ~V~~~~WnP~~~~llasg~~~s~ari~~l~-e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~ 258 (524)
T KOG0273|consen 180 EVFICAWNPLRDGLLASGSGDSTARIWNLL-ENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGE 258 (524)
T ss_pred ceEEEecCchhhhhhhccCCccceeeeeeh-hhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcE
Confidence 444556677766 88887 46789999985 21111100 1111 12222346789999999999999999999
Q ss_pred EEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee--CCCeEEEEecCCcEEEEecCCcccccee
Q 005459 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS--DNKHMLLGLSDGSLYSISWKGEFYGAFE 168 (696)
Q Consensus 91 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~--~~~~llv~t~~g~i~~~~w~~~~~~~~~ 168 (696)
+|||+........ +..+.++|.++-. .+.+|+.++.|+++.+ ||.......+
T Consensus 259 ~riw~~~G~l~~t------------------------l~~HkgPI~slKWnk~G~yilS~~vD~ttil--wd~~~g~~~q 312 (524)
T KOG0273|consen 259 ARIWNKDGNLIST------------------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTIL--WDAHTGTVKQ 312 (524)
T ss_pred EEEEecCchhhhh------------------------hhccCCceEEEEEcCCCCEEEeccCCccEEE--EeccCceEEE
Confidence 9999987433211 1233445555543 4578999999999977 6643332211
Q ss_pred eccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459 169 LVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (696)
Q Consensus 169 ~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~ 248 (696)
. ...+.....+++|-.. ..|+.-++||.+.++-... .
T Consensus 313 ~----------------------------------f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~--------~ 349 (524)
T KOG0273|consen 313 Q----------------------------------FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGE--------D 349 (524)
T ss_pred e----------------------------------eeeccCCccceEEecC-ceEeecCCCceEEEEEecC--------C
Confidence 0 0001111122232111 1223344566555543322 1
Q ss_pred ecc-eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-------
Q 005459 249 KID-KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN------- 319 (696)
Q Consensus 249 ~~~-~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg------- 319 (696)
.|. ...+|.+.|. +.|+|.+.+||+++.|+|+++|+... ....+.++. |+..|..+.|||+|
T Consensus 350 ~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~-~~~~~~l~~--------Hskei~t~~wsp~g~v~~n~~ 420 (524)
T KOG0273|consen 350 RPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ-SNSVHDLQA--------HSKEIYTIKWSPTGPVTSNPN 420 (524)
T ss_pred CcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC-Ccchhhhhh--------hccceeeEeecCCCCccCCCc
Confidence 221 2367888887 99999999999999999999999887 677888888 99999999999975
Q ss_pred --CeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcc
Q 005459 320 --SAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE 394 (696)
Q Consensus 320 --~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~ 394 (696)
..|++++.|++|++||+..+.++++|..| ..+|.+++|+|++ +++++|+ .+.+|+...++++...
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH-~~pVysvafS~~g----~ylAsGs~dg~V~iws~~~~~l~~s~----- 490 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVPIHTLMKH-QEPVYSVAFSPNG----RYLASGSLDGCVHIWSTKTGKLVKSY----- 490 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCceeEeeccC-CCceEEEEecCCC----cEEEecCCCCeeEeccccchheeEee-----
Confidence 48999999999999999999999999888 7889999999998 6666554 4445555444444333
Q ss_pred eEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 395 ~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
.+ +.-|..++|+.+|.+|..+-.||
T Consensus 491 ------------------------------------------------------~~-~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 491 ------------------------------------------------------QG-TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred ------------------------------------------------------cC-CCeEEEEEEcCCCCEEEEEecCC
Confidence 22 23378888999998888888888
Q ss_pred cE-EEEc
Q 005459 475 LI-LYDI 480 (696)
Q Consensus 475 ~i-~w~~ 480 (696)
.+ +-|+
T Consensus 516 ~vcvldl 522 (524)
T KOG0273|consen 516 SVCVLDL 522 (524)
T ss_pred CceEEEe
Confidence 88 7665
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=206.78 Aligned_cols=225 Identities=16% Similarity=0.193 Sum_probs=182.6
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++||++.+++++.. .++++|+..... ..+|.+-|. +.|..+|+.+.+|++||++||||++. ...-+.++
T Consensus 48 iTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~~--- 122 (311)
T KOG0315|consen 48 ITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRS-LSCQRNYQ--- 122 (311)
T ss_pred EcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccC-cccchhcc---
Confidence 89999998877654 488998875433 267876676 99999999999999999999999987 44433333
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|..+|+++...|+...|++|..+|.|++||+....+.+.+--.-...|+++...|++ ..++.+- +..
T Consensus 123 ------~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg----sml~a~nnkG~cy 192 (311)
T KOG0315|consen 123 ------HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG----SMLAAANNKGNCY 192 (311)
T ss_pred ------CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCC----cEEEEecCCccEE
Confidence 789999999999999999999999999999998877777654335679999999998 7666554 889
Q ss_pred EEcCCCce------EEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459 377 QWDEYGYR------LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (696)
Q Consensus 377 ~W~~~~~~------l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (696)
+|+.-+.+ .+..++.|...+ ..+++ +|.+++++.|.++++|....- - +.-..
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~------------------kle~~ 253 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-F------------------KLELV 253 (311)
T ss_pred EEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-e------------------eeEEE
Confidence 99886532 233455677777 56777 999999999999999986543 1 12346
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 448 YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 448 ~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+.+|+..++.++||.||+||++|+.|+.+ +|++..++
T Consensus 254 l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 254 LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred eecCCceEEeeeeccCccEEEecCCCCceeecccccCc
Confidence 67899999999999999999999999999 99999886
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.1e-25 Score=241.02 Aligned_cols=268 Identities=15% Similarity=0.220 Sum_probs=218.6
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+.|++||+.++.++.++.+++|+....+ .+.+|...+. ++|+|+++++++|+.|++|++||+...+..++++++
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g 244 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG 244 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC
Confidence 5699999999999999999999984433 1257888888 999999999999999999999999554688999999
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~ 374 (696)
|+..|++++|+|+|+.+++|+.|++|++||+.++.+...|.+| ...|++++|++++ ..+++++ .
T Consensus 245 --------H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h-s~~is~~~f~~d~----~~l~s~s~d~~ 311 (456)
T KOG0266|consen 245 --------HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH-SDGISGLAFSPDG----NLLVSASYDGT 311 (456)
T ss_pred --------CCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc-CCceEEEEECCCC----CEEEEcCCCcc
Confidence 9999999999999999999999999999999999999999999 7789999999999 8888887 8
Q ss_pred eEEEcCCCce--EEEEecCCcce--E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCee
Q 005459 375 MMQWDEYGYR--LYAIEEGSSER--V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVS 447 (696)
Q Consensus 375 ~~~W~~~~~~--l~~~~~~~~~~--v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 447 (696)
+++||..+++ +.....++... + ++|++ ++.++++..|+++++|++..+.. +..
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~--------------------~~~ 371 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS--------------------VGT 371 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc--------------------eee
Confidence 9999999999 45555555444 4 66666 99999999999999999887765 667
Q ss_pred eecCCC---ceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeE
Q 005459 448 YISQNW---PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTY 521 (696)
Q Consensus 448 ~~~~~~---~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~ 521 (696)
|.+|+. .+.+...+++|+++.+|+.|+.+ +|+..++.-.... +.+ ..-.+..+.|.. ++++.+. ...+.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l-~~h-~~~~~~~~~~~~~~~~~~s~s---~~~d~ 446 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL-EGH-SKAAVSDLSSHPTENLIASSS---FEGDG 446 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh-cCC-CCCceeccccCCCcCeeeecC---cCCCc
Confidence 777765 45566678999999999999999 9999986422211 111 122355788864 3444431 23567
Q ss_pred EEEEeeCC
Q 005459 522 ELLFYPRY 529 (696)
Q Consensus 522 ~lr~y~~~ 529 (696)
.+++|..+
T Consensus 447 ~~~~w~~~ 454 (456)
T KOG0266|consen 447 LIRLWKYD 454 (456)
T ss_pred eEEEecCC
Confidence 89999764
No 32
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=2.7e-24 Score=210.10 Aligned_cols=316 Identities=13% Similarity=0.150 Sum_probs=238.6
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
++...|+++|+.+++|++ .|+.-.||+.. .+..++.+... ...++++.||.||.+||++.-+|.|+||++.+
T Consensus 65 ~svFavsl~P~~~l~aTGGgDD~AflW~~~-~ge~~~eltgH------KDSVt~~~FshdgtlLATGdmsG~v~v~~~st 137 (399)
T KOG0296|consen 65 DSVFAVSLHPNNNLVATGGGDDLAFLWDIS-TGEFAGELTGH------KDSVTCCSFSHDGTLLATGDMSGKVLVFKVST 137 (399)
T ss_pred CceEEEEeCCCCceEEecCCCceEEEEEcc-CCcceeEecCC------CCceEEEEEccCceEEEecCCCccEEEEEccc
Confidence 466678899999999998 57789999997 55666655433 34578999999999999999999999999975
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
+..+..+ . ....+
T Consensus 138 g~~~~~~-----------------~----~e~~d---------------------------------------------- 150 (399)
T KOG0296|consen 138 GGEQWKL-----------------D----QEVED---------------------------------------------- 150 (399)
T ss_pred CceEEEe-----------------e----cccCc----------------------------------------------
Confidence 5321100 0 00000
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec---ceecC
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DKELG 255 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~~~ 255 (696)
|.-|. +.|-+.+++.++.|+.+..|.+... +...|
T Consensus 151 --------------------------------ieWl~----------WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 151 --------------------------------IEWLK----------WHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred --------------------------------eEEEE----------ecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 11112 2344555555555555555655441 12357
Q ss_pred CCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 256 SGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 256 ~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
|+.... =.|.|+|+.+++|..||+|++|+..+ +.++..+... ..++..+++++.+|..+.+|..++.+.+-
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~kt-g~p~~~~~~~-------e~~~~~~~~~~~~~~~~~~g~~e~~~~~~ 260 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKT-GQPLHKITQA-------EGLELPCISLNLAGSTLTKGNSEGVACGV 260 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCC-CceeEEeccc-------ccCcCCccccccccceeEeccCCccEEEE
Confidence 765554 78999999999999999999999998 7888877752 35678899999999999999999999999
Q ss_pred EccCCeeEEEeec-------ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--c
Q 005459 335 SVSGCRLMSTIRQ-------ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--G 402 (696)
Q Consensus 335 ~~~~~~~~~~l~~-------~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~ 402 (696)
+..+++.+....+ .....+.++.+.|.. .+....+.|+ ++.+||....++.... .|...|+.+.+ .
T Consensus 261 ~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~t 338 (399)
T KOG0296|consen 261 NNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLNT 338 (399)
T ss_pred ccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcCc
Confidence 9888887766652 123445566665542 2335666776 9999999887776666 56778888777 5
Q ss_pred eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
+.+++++.++.++.||.++|.. ..+|.+|+.+|.+.+++|++++++++|.|+++ +|++.
T Consensus 339 ~~l~t~c~~g~v~~wDaRtG~l--------------------~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 339 DYLLTACANGKVRQWDARTGQL--------------------KFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeeccCceEEeeeccccce--------------------EEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8999999999999999998876 67899999999999999999999999999999 98764
No 33
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=2.7e-24 Score=210.14 Aligned_cols=311 Identities=14% Similarity=0.206 Sum_probs=235.6
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
++...|+-+++++++.|....+|+..+++. +.+|.+.|. +.||.||.+||+|..+|.|+||...+ +.....+..
T Consensus 69 avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~st-g~~~~~~~~- 146 (399)
T KOG0296|consen 69 AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVST-GGEQWKLDQ- 146 (399)
T ss_pred EEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEccc-CceEEEeec-
Confidence 345677788888888888888999887753 278998887 99999999999999999999999998 554444543
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~ 375 (696)
.-+.+.-|.|.|-+..|++|+.||.+.+|.+..+...+.+.|| ..++++-.|.|+| +.+++|. ++
T Consensus 147 -------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh-~~~ct~G~f~pdG----Kr~~tgy~dgti 214 (399)
T KOG0296|consen 147 -------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGH-NSPCTCGEFIPDG----KRILTGYDDGTI 214 (399)
T ss_pred -------ccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCC-CCCcccccccCCC----ceEEEEecCceE
Confidence 4567888999999999999999999999999998788888888 7789999999999 8888887 99
Q ss_pred EEEcCCCceEEEEecCCcce-E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459 376 MQWDEYGYRLYAIEEGSSER-V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~-v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (696)
++|++.+++.+....+.... . ..+.. +..+++++.++..++-... ..++....-.. .|.....+
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~--sgKVv~~~n~~----------~~~l~~~~ 282 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG--SGKVVNCNNGT----------VPELKPSQ 282 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc--cceEEEecCCC----------Cccccccc
Confidence 99999999988877643322 2 33433 6677888888877663322 22222111101 12222223
Q ss_pred C---CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC-cEEEEEEeecCCCeEEEEEe
Q 005459 452 N---WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFY 526 (696)
Q Consensus 452 ~---~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~-~~lv~~~~~~~~~~~~lr~y 526 (696)
. ..|.++.+|.+=...|+|+-||++ +||..+.+.|. ..|++-.|..+.|.+ ++|.++|.+ ..+|.|
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~----~c~he~~V~~l~w~~t~~l~t~c~~-----g~v~~w 353 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH----ICEHEDGVTKLKWLNTDYLLTACAN-----GKVRQW 353 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhhe----eccCCCceEEEEEcCcchheeeccC-----ceEEee
Confidence 2 346666777777899999999999 99998865443 223333488999988 899998765 689999
Q ss_pred eCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459 527 PRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 527 ~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
+.. +|-..+..|...+.. +++++..+.+++++.|+..++|.+
T Consensus 354 DaRtG~l~~~y~GH~~~Il~--f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 354 DARTGQLKFTYTGHQMGILD--FALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eccccceEEEEecCchheeE--EEEcCCCcEEEEecCCCeEEEEec
Confidence 975 555555666665555 778889999999999999999975
No 34
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.2e-25 Score=238.99 Aligned_cols=269 Identities=17% Similarity=0.250 Sum_probs=223.1
Q ss_pred EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459 136 SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (696)
Q Consensus 136 ~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (696)
..|+++++.++.++.++.++.+.+..... .. + ..+.++...|.++.
T Consensus 165 ~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~-----------~----------------------~~l~~h~~~v~~~~ 210 (456)
T KOG0266|consen 165 VDFSPDGRALAAASSDGLIRIWKLEGIKS-NL-----------L----------------------RELSGHTRGVSDVA 210 (456)
T ss_pred EEEcCCCCeEEEccCCCcEEEeecccccc-hh-----------h----------------------ccccccccceeeeE
Confidence 35688899988899999998865532210 00 0 11234555676654
Q ss_pred EccCcceEEEEEeCCcEEEEeeccCCceeeeeeec----ceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----DKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS 290 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~ 290 (696)
|+|||+++++++.|+++++||.... +.+.+|...+. ++|+|+++++++|+.|++|++||+++ ++
T Consensus 211 ----------fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-~~ 279 (456)
T KOG0266|consen 211 ----------FSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-GE 279 (456)
T ss_pred ----------ECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-Ce
Confidence 8999999999999999999999433 23379999888 99999999999999999999999998 89
Q ss_pred eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeeccccc-ceecccccCCCCCCcc
Q 005459 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLS-SISSPIVKPNQDCKYE 367 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~-~v~~~~~sp~~~~~~~ 367 (696)
+++.+.+ |.++|++++|++||+.|++++.|+.|++||+.++. +..++.++... .++++.|+|++ +
T Consensus 280 ~~~~l~~--------hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~----~ 347 (456)
T KOG0266|consen 280 CVRKLKG--------HSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG----K 347 (456)
T ss_pred EEEeeec--------cCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC----c
Confidence 9999999 99999999999999999999999999999999998 66788776344 69999999999 8
Q ss_pred ceecce---eeEEEcCCCceEEEEecCCcceE---EEE--ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 368 PLMSGT---SMMQWDEYGYRLYAIEEGSSERV---LIF--SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 368 ~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~~~--~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
+++++. .+++|+...+.......+|...+ ... .. ++.+++++.|+.+.+|++..+..
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-------------- 413 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-------------- 413 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch--------------
Confidence 888776 89999999999999988887753 122 22 88999999999999999887554
Q ss_pred eEEeecCeeeecC-CCceEEEEEcCCCCEEEEEe--CCccE-EEEcc
Q 005459 439 ILHLNLPVSYISQ-NWPVQHVAASKDGMFLAVAG--LHGLI-LYDIR 481 (696)
Q Consensus 439 w~~~~~~~~~~~~-~~~I~~va~s~dG~~la~ag--~dG~i-~w~~~ 481 (696)
...+.+| ..++..++++|...++++++ .|+.+ +|...
T Consensus 414 ------~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 414 ------LQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ------hhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 5677888 88999999999999999999 78889 98653
No 35
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=1.1e-24 Score=211.81 Aligned_cols=276 Identities=11% Similarity=0.159 Sum_probs=224.4
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
.+|.+.|. +++.|-..++|+|+.|++|+|||+.+ +.+..++.+ |...|..+++|+---+|+++++|+.|+
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltG--------hi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTG--------HIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecc--------hhheeeeeeecccCceEEEecCCCeeE
Confidence 68999998 99999999999999999999999999 899999999 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL 406 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~ 406 (696)
.||+...+.+....|| .+.|.+++.+|.. +.+++|+ ++++||.++..-+.++.||...| +.+.+ .-+++
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTl----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvi 293 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTL----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVI 293 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccc----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceE
Confidence 9999999999999888 8899999999988 8888887 89999999999999999999998 34444 77899
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~ 486 (696)
|++.|+++++||+..+.. ..++..|+-.|++++..|....+|+||.|..-.|++..|..
T Consensus 294 t~S~D~tvrlWDl~agkt--------------------~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f- 352 (460)
T KOG0285|consen 294 TGSHDSTVRLWDLRAGKT--------------------MITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF- 352 (460)
T ss_pred EecCCceEEEeeeccCce--------------------eEeeecccceeeEEecCCchhhhhccCCccceeccCCccch-
Confidence 999999999999998887 45778899999999999999999999999877999888752
Q ss_pred ecCCccceeeeEEEeEeeeC-cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCc-----cE---EEEccCCEEE
Q 005459 487 VFGDITQEQKIQSKGLLWLG-KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAK-----PI---VMDVYEDYIL 557 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~~-~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~-----~l---~~~~~~~~ll 557 (696)
..+. .++.-.+..|.-+. ++++++ ++...|-+|+-..--+-+.+++..-|.. -+ .++-.+-.|+
T Consensus 353 -~~nl-sgh~~iintl~~nsD~v~~~G-----~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 353 -LQNL-SGHNAIINTLSVNSDGVLVSG-----GDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred -hhcc-ccccceeeeeeeccCceEEEc-----CCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 2332 22333345677765 455555 4557899998752222222222212211 12 2233567789
Q ss_pred EEEcCceEEEEEEE
Q 005459 558 VTYRPFDVHIFHVK 571 (696)
Q Consensus 558 v~~~d~~~~l~~~~ 571 (696)
++-+|+.|.+|+-+
T Consensus 426 t~eadKtIk~~keD 439 (460)
T KOG0285|consen 426 TGEADKTIKMYKED 439 (460)
T ss_pred eccCCcceEEEecc
Confidence 99999999999743
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.93 E-value=9.6e-26 Score=218.09 Aligned_cols=272 Identities=14% Similarity=0.208 Sum_probs=221.0
Q ss_pred ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (696)
Q Consensus 132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (696)
..+|.|+..|.+.|+.|..|.+|.+ ||..... ....+.+|.+.|
T Consensus 197 skgVYClQYDD~kiVSGlrDnTiki--WD~n~~~----------------------------------c~~~L~GHtGSV 240 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKI--WDKNSLE----------------------------------CLKILTGHTGSV 240 (499)
T ss_pred CCceEEEEecchhhhcccccCceEE--eccccHH----------------------------------HHHhhhcCCCcE
Confidence 4578999999999999999999998 5543321 112455777788
Q ss_pred EEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC
Q 005459 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 212 ~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~ 287 (696)
.++.| |.+++++++.|.|+++||..+++.+ .+|.+++- +.|+. .++++++.|.+++|||+..
T Consensus 241 LCLqy------------d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 241 LCLQY------------DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred Eeeec------------cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccC
Confidence 87764 4568899999999999999998765 67888887 88885 5799999999999999987
Q ss_pred CC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCC
Q 005459 288 SA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (696)
Q Consensus 288 ~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~ 365 (696)
+. .+.+.+.+ |..+|+.+.|+. +++++++.|+++++|++.++.++.++.+| ...|.++.+ .+
T Consensus 307 ps~it~rrVLvG--------HrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efvRtl~gH-kRGIAClQY--r~--- 370 (499)
T KOG0281|consen 307 PTDITLRRVLVG--------HRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFVRTLNGH-KRGIACLQY--RD--- 370 (499)
T ss_pred chHHHHHHHHhh--------hhhheeeecccc--ceEEEecCCceEEEEeccceeeehhhhcc-cccceehhc--cC---
Confidence 43 23456677 999999999964 59999999999999999999999999999 666776665 33
Q ss_pred ccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459 366 YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (696)
Q Consensus 366 ~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (696)
+.++||+ ++++|+.+.|.++..++||.+-|-++.| .+.+++|++||++++|++..+.+.-....
T Consensus 371 -rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~----------- 438 (499)
T KOG0281|consen 371 -RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPAS----------- 438 (499)
T ss_pred -eEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCccccc-----------
Confidence 7889998 9999999999999999999999988888 88999999999999999988876100000
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
.-+..+...|.+.|.-+.| |...+++.+.|.+| +||...+
T Consensus 439 ~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 TLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred chHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 0012244578889998888 55789999999999 9998765
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.7e-25 Score=214.62 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=218.4
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.+.|+-.+.++++.|.+++.||..+++.. .||.+++. ++|+..|++||+++.|-.+++||.++..++++.+.+
T Consensus 114 v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~g-- 191 (406)
T KOG0295|consen 114 VIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIG-- 191 (406)
T ss_pred eeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcC--
Confidence 446777778888889999999999887653 79999998 999999999999999999999999875577788888
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|.-.|.+++|-|-|.+++|++.|.+|+.|++.++.++.++.+| ...|..++...|+ ..+++++ ++.
T Consensus 192 ------h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h-~ewvr~v~v~~DG----ti~As~s~dqtl~ 260 (406)
T KOG0295|consen 192 ------HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH-SEWVRMVRVNQDG----TIIASCSNDQTLR 260 (406)
T ss_pred ------cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc-hHhEEEEEecCCe----eEEEecCCCceEE
Confidence 8999999999999999999999999999999999999999999 6689999998888 8888887 899
Q ss_pred EEcCCCceEEEEecCCcceE--EEEec-----------c-----eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 377 QWDEYGYRLYAIEEGSSERV--LIFSF-----------G-----KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-----------~-----~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
+|-.++.++...+..|.-.| +++.+ + ..+.+++.|+++++|++.++..
T Consensus 261 vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-------------- 326 (406)
T KOG0295|consen 261 VWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-------------- 326 (406)
T ss_pred EEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE--------------
Confidence 99999998877777776665 33322 2 4788999999999999988864
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI 515 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~ 515 (696)
..++.+|...|+.++|+|-|+||++..+|+++ +||+++++...-.+ .+| ..|..+..++ .+++++
T Consensus 327 ------L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~--hfvt~lDfh~~~p~VvTG--- 394 (406)
T KOG0295|consen 327 ------LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-AHE--HFVTSLDFHKTAPYVVTG--- 394 (406)
T ss_pred ------EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-CCc--ceeEEEecCCCCceEEec---
Confidence 66888999999999999999999999999999 99999987543222 333 3466666664 455554
Q ss_pred cCCCeEEEEEee
Q 005459 516 DSSNTYELLFYP 527 (696)
Q Consensus 516 ~~~~~~~lr~y~ 527 (696)
+-+...++|.
T Consensus 395 --sVdqt~KvwE 404 (406)
T KOG0295|consen 395 --SVDQTVKVWE 404 (406)
T ss_pred --cccceeeeee
Confidence 2334566664
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.92 E-value=3.9e-25 Score=213.87 Aligned_cols=257 Identities=11% Similarity=0.156 Sum_probs=212.1
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
+-=|...++++..|.|+++||....++. .||.+.+- +.| +.++|++|+.|.+|+|||+++ +++++++-.
T Consensus 203 lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~t-ge~l~tlih---- 275 (499)
T KOG0281|consen 203 LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNT-GEPLNTLIH---- 275 (499)
T ss_pred EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccC-CchhhHHhh----
Confidence 3345566888999999999998776543 78988774 665 456999999999999999999 899999988
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~ 375 (696)
|...|..+.|+. .++++++.|++++|||+.... +...|.|| ...|+.+.|+ . +++++++ ++
T Consensus 276 ----HceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~----kyIVsASgDRTi 342 (499)
T KOG0281|consen 276 ----HCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--D----KYIVSASGDRTI 342 (499)
T ss_pred ----hcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--c----ceEEEecCCceE
Confidence 999999999984 489999999999999997653 45667788 7889999883 3 5677666 99
Q ss_pred EEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 376 MQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
++|+..+++.+.++.+|...|.++.+ ++.+++|+.|.++++|++..|.. ...+.||..-
T Consensus 343 kvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~c--------------------LRvLeGHEeL 402 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC--------------------LRVLEGHEEL 402 (499)
T ss_pred EEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHH--------------------HHHHhchHHh
Confidence 99999999999999999999999999 99999999999999999988875 6678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe------cCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV------FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~------f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
|+++.| |.+.+++|+-||.+ +||+.++.-.. .-....|+...|.++.+..--+|++ +.+.+|-+|+
T Consensus 403 vRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvss-----sHddtILiWd 475 (499)
T KOG0281|consen 403 VRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISS-----SHDDTILIWD 475 (499)
T ss_pred hhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEec-----cCCCeEEEEE
Confidence 999999 56799999999999 99998874220 0011234444577888877777776 5668999998
Q ss_pred CC
Q 005459 528 RY 529 (696)
Q Consensus 528 ~~ 529 (696)
..
T Consensus 476 Fl 477 (499)
T KOG0281|consen 476 FL 477 (499)
T ss_pred cC
Confidence 86
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5e-24 Score=210.74 Aligned_cols=279 Identities=15% Similarity=0.194 Sum_probs=210.6
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
.++-.+.||++|++||+++ |.+.-||.+. +.+.+. ++.+..+ +..++..+.||||.++|+++..+..+.+||+.+
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~k-l~~tlvg--h~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~t 300 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVV-YDVHFK-LKKTLVG--HSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDT 300 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEe-cCccee-eeeeeec--ccCceEEEEECCCCCeEEecCchHheeeccCCc
Confidence 5677899999999999995 6789999985 444422 2333222 456788899999999999999999999999998
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
+......+.. .+....-++..||+.++++|+.|+.+..|+.||+....-+
T Consensus 301 gd~~~~y~~~--------------------~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~---------- 350 (519)
T KOG0293|consen 301 GDLRHLYPSG--------------------LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWE---------- 350 (519)
T ss_pred chhhhhcccC--------------------cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhccc----------
Confidence 7753322100 0112344577899999999999999998877776543221
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecC
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELG 255 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~ 255 (696)
.-..-.|.+++ +++||+.+++...|..+++.+.+.... ...
T Consensus 351 --------------------------gvr~~~v~dla----------it~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise 394 (519)
T KOG0293|consen 351 --------------------------GVRDPKVHDLA----------ITYDGKYVLLVTVDKKIRLYNREARVDRGLISE 394 (519)
T ss_pred --------------------------ccccceeEEEE----------EcCCCcEEEEEecccceeeechhhhhhhccccc
Confidence 11122355654 899999999988999999888764322 134
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC--eEEEEECC-CCCeEEEEEcCCcEE
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTP-DNSAFAVGWKSRGLT 332 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~--V~~l~~sp-dg~~lasg~~Dg~v~ 332 (696)
+...+...+|.|++++.+--.+..+++||+.+ ...++...+ |+.. +..-+|-- |...+|+|++|+.|.
T Consensus 395 ~~~its~~iS~d~k~~LvnL~~qei~LWDl~e-~~lv~kY~G--------hkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 395 EQPITSFSISKDGKLALVNLQDQEIHLWDLEE-NKLVRKYFG--------HKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred cCceeEEEEcCCCcEEEEEcccCeeEEeecch-hhHHHHhhc--------ccccceEEEeccCCCCcceEEecCCCceEE
Confidence 44555599999999999999999999999997 777777777 6543 33445654 668999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
+|+-..++++.+|.|| ...|++++++|..+ +.++|++ ++++|.+.
T Consensus 466 IWhr~sgkll~~LsGH-s~~vNcVswNP~~p---~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 466 IWHRISGKLLAVLSGH-SKTVNCVSWNPADP---EMFASASDDGTIRIWGPS 513 (519)
T ss_pred EEEccCCceeEeecCC-cceeeEEecCCCCH---HHhhccCCCCeEEEecCC
Confidence 9999999999999999 67899999999863 6667666 77777664
No 40
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=2.2e-23 Score=198.95 Aligned_cols=277 Identities=12% Similarity=0.126 Sum_probs=210.4
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
.+|++.|. +.|+|+|.+||+|+.|..|.+|++....++.-++++ |+++|..+.|++||+.|++++.|++++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkg--------HsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKG--------HSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeecc--------ccceeEeeeeccCCCEEEEecCCceEE
Confidence 78999998 999999999999999999999998765677788888 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (696)
.||+++++....+++| .+-|+++.-+..+ .+.+.||+ ++++||.+..+.+.+... +-++.++.| +..+.
T Consensus 116 ~wD~~tG~~~rk~k~h-~~~vNs~~p~rrg---~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGH-TSFVNSLDPSRRG---PQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVI 190 (338)
T ss_pred EEecccceeeehhccc-cceeeecCccccC---CeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEeccccccee
Confidence 9999999999999998 6778887743333 26667776 999999998888777644 456777777 77899
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc----
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR---- 481 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~---- 481 (696)
+|+-|+.+++||+...+. ...+.+|..+|..++.||+|.++.+-+-|.++ +||++
T Consensus 191 sggIdn~ikvWd~r~~d~--------------------~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p 250 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--------------------LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAP 250 (338)
T ss_pred eccccCceeeeccccCcc--------------------eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCC
Confidence 999999999999987775 45677999999999999999999999999999 99985
Q ss_pred CCc-eEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEE
Q 005459 482 QKK-WRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVT 559 (696)
Q Consensus 482 sg~-w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~ 559 (696)
+.| -+.|....+..+...-...|.++ .-++++ +.+..+.+|+...+..-+.+-.+...-.-+.+.|.+..++.+
T Consensus 251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ag----s~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAG----SADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSC 326 (338)
T ss_pred CCceEEEeecchhhhhhhcceeeccCCCCccccc----cccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEe
Confidence 333 45554333222222336788754 234442 234567788764222211111111111124555778888888
Q ss_pred EcCceEEE
Q 005459 560 YRPFDVHI 567 (696)
Q Consensus 560 ~~d~~~~l 567 (696)
+.|+.+.|
T Consensus 327 ~sdk~i~l 334 (338)
T KOG0265|consen 327 SSDKTIYL 334 (338)
T ss_pred ccCceeEe
Confidence 87776654
No 41
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=7.8e-25 Score=203.35 Aligned_cols=267 Identities=18% Similarity=0.206 Sum_probs=215.2
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (696)
Q Consensus 137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (696)
.+.+++-.|+.+++||.--+ -++++..-. -...+++..|....
T Consensus 24 ~itp~g~flisa~kd~~pml--r~g~tgdwi----------------------------------gtfeghkgavw~~~- 66 (334)
T KOG0278|consen 24 PITPDGYFLISASKDGKPML--RNGDTGDWI----------------------------------GTFEGHKGAVWSAT- 66 (334)
T ss_pred CCCCCceEEEEeccCCCchh--ccCCCCCcE----------------------------------EeeeccCcceeeee-
Confidence 45677888888998886432 234432211 02345666675432
Q ss_pred ccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
+..+....++++.|.+.++||..++..+ ..|...|. ++|+.|.+.|.+|+.+..+||||++....+..
T Consensus 67 ---------l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 67 ---------LNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred ---------cCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 4455667778889999999999888765 67889998 99999999999999999999999988666677
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcccee--c
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--S 371 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--s 371 (696)
.+.+ |++.|+.+-|....+++.+..+|++||+||..++..+++|.-. +.|+++.+++++ +.+. -
T Consensus 138 E~~g--------htg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~--s~VtSlEvs~dG----~ilTia~ 203 (334)
T KOG0278|consen 138 EISG--------HTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN--SPVTSLEVSQDG----RILTIAY 203 (334)
T ss_pred hhcC--------CCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC--CCCcceeeccCC----CEEEEec
Confidence 7777 9999999999998899999999999999999999999999863 569999999998 6554 4
Q ss_pred ceeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 372 GTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 372 g~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
|+.+.+|++.+..++...+- ...| ..++| ....+.|+.|+.++-+|..++++. ..|
T Consensus 204 gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi--------------------~~~ 262 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI--------------------GSY 262 (334)
T ss_pred CceeEEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCcee--------------------eec
Confidence 55999999999988877643 2334 56667 556789999999999999999883 345
Q ss_pred -ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 449 -ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 449 -~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
.+|-+||.|+.|||||...|+|++||++ +|.+..++
T Consensus 263 nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 263 NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 7899999999999999999999999999 99987654
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=6.8e-23 Score=209.27 Aligned_cols=218 Identities=20% Similarity=0.316 Sum_probs=169.1
Q ss_pred eCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
++++.+++++.++.+++|+....+. ...|...+. +.|+|+++++++++.||.|++|++.+ .+....+..
T Consensus 61 ~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~------ 133 (289)
T cd00200 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-GKCLTTLRG------ 133 (289)
T ss_pred CCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-cEEEEEecc------
Confidence 3333344444444444444432211 134554444 99999999999999999999999986 667777776
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (696)
|.+.|.+++|+|++..++++..|+.+++||+..++....+..| ...+.++.++|++ +.++.+. .+.+|+.
T Consensus 134 --~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~----~~l~~~~~~~~i~i~d~ 206 (289)
T cd00200 134 --HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH-TGEVNSVAFSPDG----EKLLSSSSDGTIKLWDL 206 (289)
T ss_pred --CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecC-ccccceEEECCCc----CEEEEecCCCcEEEEEC
Confidence 8999999999999999999988999999999988888888876 6679999999997 5665554 8899999
Q ss_pred CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
..++.......|...+..+.+ ++.+++++.++.+++|++..+.. ...+..|..+|.+
T Consensus 207 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~--------------------~~~~~~~~~~i~~ 266 (289)
T cd00200 207 STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC--------------------VQTLSGHTNSVTS 266 (289)
T ss_pred CCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee--------------------EEEccccCCcEEE
Confidence 988888887777777755444 56677777799999999876443 3345578889999
Q ss_pred EEEcCCCCEEEEEeCCccE-EEE
Q 005459 458 VAASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 458 va~s~dG~~la~ag~dG~i-~w~ 479 (696)
++|+|+|+++++++.||.+ +|+
T Consensus 267 ~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 267 LAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEECCCCCEEEEecCCCeEEecC
Confidence 9999999999999999999 985
No 43
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7.7e-24 Score=206.76 Aligned_cols=275 Identities=13% Similarity=0.134 Sum_probs=224.8
Q ss_pred ccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459 130 EKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (696)
Q Consensus 130 ~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 207 (696)
++..+|+.+ .++-..+++++.|++|++++. ++..-. ..+.++
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~--~tg~~e----------------------------------~~LrGH 149 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDT--ETGELE----------------------------------RSLRGH 149 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEc--cchhhh----------------------------------hhhhcc
Confidence 344455444 334456777778999998543 322110 123344
Q ss_pred cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-ce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEE
Q 005459 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI-DK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVEL 282 (696)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~-~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~v 282 (696)
...+.++. |+..|+.+++++.|-.+++||.... ++ ..+|+..+. +.|-|.|.+|++++.|.+|+.
T Consensus 150 t~sv~di~----------~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 150 TDSVFDIS----------FDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred ccceeEEE----------EecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 44566655 7788999999999999999998753 22 268888887 999999999999999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
|++++ +-+++++.+ |..-|..++.+.||..+|+++.|.++++|-+.++.+...+++| +..|.+++|-|..
T Consensus 220 We~~t-g~cv~t~~~--------h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~h-Eh~vEci~wap~~ 289 (406)
T KOG0295|consen 220 WECDT-GYCVKTFPG--------HSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREH-EHPVECIAWAPES 289 (406)
T ss_pred Eeccc-ceeEEeccC--------chHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcc-ccceEEEEecccc
Confidence 99999 899999999 9999999999999999999999999999999999888899988 7888888887654
Q ss_pred C------C----C-ccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459 363 D------C----K-YEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (696)
Q Consensus 363 ~------~----~-~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~ 425 (696)
. . + .+.+.+|+ ++++|+..++.+++++.+|.+.| ++|++ ||+++|+..|+++++||+.....
T Consensus 290 ~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c- 368 (406)
T KOG0295|consen 290 SYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC- 368 (406)
T ss_pred cCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-
Confidence 2 1 1 14566776 99999999999999999999999 77777 99999999999999999887665
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
-.+...|..-+.++.|..+--|+++|+-|..+ +|.-
T Consensus 369 -------------------mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 369 -------------------MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -------------------eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 34556788889999999999999999999999 9863
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=5.8e-23 Score=241.35 Aligned_cols=228 Identities=12% Similarity=0.145 Sum_probs=175.2
Q ss_pred CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
+++.+++++.|+++++||....+.. .+|.+.+. ++|+| ++.+|++|+.||+|++||+.+ +..+.++..
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~~~~~~~------ 616 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVSIGTIKT------ 616 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcEEEEEec------
Confidence 4677888888999999998765432 67888887 99997 789999999999999999987 666666654
Q ss_pred CCCCCCeEEEEEC-CCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459 304 MDDTGPVSCIAWT-PDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (696)
Q Consensus 304 ~~h~g~V~~l~~s-pdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W 378 (696)
| ..|.+++|+ ++|+.||+|+.||.|++||+.... ...++.+| ...|+++.|. ++ ..+++++ ++++|
T Consensus 617 --~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~-~~----~~lvs~s~D~~ikiW 687 (793)
T PLN00181 617 --K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFV-DS----STLVSSSTDNTLKLW 687 (793)
T ss_pred --C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCC-CCCEEEEEEe-CC----CEEEEEECCCEEEEE
Confidence 4 579999995 589999999999999999997654 46677777 6779999996 44 5677776 89999
Q ss_pred cCCC------ceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eee
Q 005459 379 DEYG------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSY 448 (696)
Q Consensus 379 ~~~~------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~ 448 (696)
+... ...+..+.+|...+ +.+++ ++.+++++.|+.+++|+........ .+.- ...+ .++ ...
T Consensus 688 d~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~-s~~~-~~~~------~~~~~~~ 759 (793)
T PLN00181 688 DLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL-SYKF-KTID------PVSGLEV 759 (793)
T ss_pred eCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-EEec-ccCC------ccccccc
Confidence 9863 35677788888766 55666 8899999999999999965443211 0000 0000 000 012
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
..|...|++++|+|+|++|++|+.||.+ +|++
T Consensus 760 ~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 760 DDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 3456789999999999999999999999 9986
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=5.7e-23 Score=241.40 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=207.2
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeec----c-------eecCCCCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCC
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI----D-------KELGSGDAVCASIAP-EQQILAVGTRRGVVELYDLAESA 289 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----~-------~~~~~~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~ 289 (696)
..+.|++||+++++++.|+++++|+.... . ...++....+++|+| ++++||+|+.||+|++||+.+ +
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~-~ 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR-S 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC-C
Confidence 45678999999999999999999986421 0 012233333489987 578999999999999999987 6
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC-CCCCCcc
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP-NQDCKYE 367 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp-~~~~~~~ 367 (696)
+.+..+.+ |.+.|++++|+| |+.+|++|+.|++|++||+..+..+.++..+ ..+.++.|++ ++ .
T Consensus 566 ~~~~~~~~--------H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~--~~v~~v~~~~~~g----~ 631 (793)
T PLN00181 566 QLVTEMKE--------HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK--ANICCVQFPSESG----R 631 (793)
T ss_pred eEEEEecC--------CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC--CCeEEEEEeCCCC----C
Confidence 77777877 999999999997 8999999999999999999998888888754 4588888854 45 7
Q ss_pred ceecce---eeEEEcCCCce-EEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459 368 PLMSGT---SMMQWDEYGYR-LYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (696)
Q Consensus 368 ~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (696)
.+++|+ .+.+|+....+ .+....+|...|..+.| +..+++++.|+++++|++..+.... .+
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~-----------~~-- 698 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGI-----------NE-- 698 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcccc-----------CC--
Confidence 788877 89999998765 45666788888866665 7889999999999999986532100 00
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--eE-ecCCc-------cceeeeEEEeEeeeC--cE
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WR-VFGDI-------TQEQKIQSKGLLWLG--KI 508 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w~-~f~~~-------~~e~~~~v~~~~w~~--~~ 508 (696)
.....+.+|...+.+++|+|+|++||+|+.||.+ +|+..... |. .|... ..+....|..++|.+ ..
T Consensus 699 -~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 699 -TPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred -cceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 0234677899999999999999999999999999 99976542 11 11111 011223477999975 46
Q ss_pred EEEEEeecCCCeEEEEEee
Q 005459 509 IVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 509 lv~~~~~~~~~~~~lr~y~ 527 (696)
++++ +.++.|++|+
T Consensus 778 lva~-----~~dG~I~i~~ 791 (793)
T PLN00181 778 LVAA-----NSTGNIKILE 791 (793)
T ss_pred EEEe-----cCCCcEEEEe
Confidence 6666 3457899985
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=2.4e-23 Score=202.57 Aligned_cols=273 Identities=14% Similarity=0.195 Sum_probs=220.5
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~ 281 (696)
+|..-|++++ +-|-...+++++.|+++++||+.+++.. .||-..+. ++||+...++.+++.|++|+
T Consensus 149 gHlgWVr~va----------vdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 149 GHLGWVRSVA----------VDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred hccceEEEEe----------eCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 4555566654 6677778888999999999999988654 68888888 99999999999999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
.||+.. .+.++...+ |-..|.|++..|.-..|++|+.|.++||||+.+...+.++.|| ...|.++.+.|.
T Consensus 219 CwDLe~-nkvIR~YhG--------HlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH-~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHG--------HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGH-TNPVASVMCQPT 288 (460)
T ss_pred EEechh-hhhHHHhcc--------ccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCC-CCcceeEEeecC
Confidence 999998 888998998 9999999999999999999999999999999999999999999 888999999887
Q ss_pred CCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (696)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (696)
+ ..+++|+ ++++||...++-..++..|...+ +++.| ...++|++.|. ++-|++..++-
T Consensus 289 d----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f----------- 352 (460)
T KOG0285|consen 289 D----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEF----------- 352 (460)
T ss_pred C----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccch-----------
Confidence 7 6788887 99999999999999988888887 55566 45566777664 66788776664
Q ss_pred cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC-Cccc----eeeeEEEeEeee--Cc
Q 005459 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG-DITQ----EQKIQSKGLLWL--GK 507 (696)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~-~~~~----e~~~~v~~~~w~--~~ 507 (696)
...+.+|+.-|.+++...|| ++++|++.|.+ .||.++|---.+. ...| |.+--+...|+. +-
T Consensus 353 ---------~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~ 422 (460)
T KOG0285|consen 353 ---------LQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGS 422 (460)
T ss_pred ---------hhccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCc
Confidence 44578999999999999998 56689999999 9999988421111 1111 222223444554 45
Q ss_pred EEEEEEeecCCCeEEEEEeeCC
Q 005459 508 IIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 508 ~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.||+| ..+..|++|..+
T Consensus 423 rlit~-----eadKtIk~~keD 439 (460)
T KOG0285|consen 423 RLITG-----EADKTIKMYKED 439 (460)
T ss_pred eEEec-----cCCcceEEEecc
Confidence 67776 345789999775
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.92 E-value=3.6e-23 Score=197.49 Aligned_cols=225 Identities=14% Similarity=0.148 Sum_probs=185.5
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCC-cEEEEEecCCeEE
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQ-QILAVGTRRGVVE 281 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~-~~la~g~~dg~v~ 281 (696)
+..+|.++. +.+||+.+++++.|+++..||.+++++. .+|.+.+. +..+..| .++.+|+.||+++
T Consensus 89 HsgAVM~l~----------~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~k 158 (338)
T KOG0265|consen 89 HSGAVMELH----------GMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLK 158 (338)
T ss_pred ccceeEeee----------eccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEE
Confidence 344566655 7899999999999999999999998765 67888887 6644444 4677899999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
|||++. ...++++.. +-+++++.|..++..+.+|+-|+.|++||+.......++.|| .+.|+.+..+|+
T Consensus 159 l~D~R~-k~~~~t~~~---------kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh-~DtIt~lsls~~ 227 (338)
T KOG0265|consen 159 LWDIRK-KEAIKTFEN---------KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH-ADTITGLSLSRY 227 (338)
T ss_pred EEeecc-cchhhcccc---------ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc-cCceeeEEeccC
Confidence 999998 677776654 567999999999999999999999999999999999999999 889999999999
Q ss_pred CCCCccceecce---eeEEEcCC----CceEEEEecCCcceE------EEEec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459 362 QDCKYEPLMSGT---SMMQWDEY----GYRLYAIEEGSSERV------LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (696)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~----~~~l~~~~~~~~~~v------~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (696)
+ .++.+-+ ++++|+.+ +.+++.++.+|.... ...++ +..+.+++.|..+++|+.....-
T Consensus 228 g----s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~--- 300 (338)
T KOG0265|consen 228 G----SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI--- 300 (338)
T ss_pred C----CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE---
Confidence 9 6766555 89999985 456677777765432 45556 77788899999999999654332
Q ss_pred EEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459 428 VVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 428 ~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i 476 (696)
.-.+.+|.+.|.+++|.|....+.+++.|.++
T Consensus 301 -----------------lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 301 -----------------LYKLPGHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred -----------------EEEcCCcceeEEEeeecCCCcEEEEeccCcee
Confidence 33456899999999999999999999999887
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.91 E-value=3.6e-22 Score=203.89 Aligned_cols=269 Identities=20% Similarity=0.295 Sum_probs=214.2
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeE-EEEEcCCCcEEEEEecCCeEE
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAV-CASIAPEQQILAVGTRRGVVE 281 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~ 281 (696)
.|...|.++. ++++|+.+++++.++.+.+|+....+ ....|...+ .+.|+|+++.|++++.||.|+
T Consensus 7 ~h~~~i~~~~----------~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 76 (289)
T cd00200 7 GHTGGVTCVA----------FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIR 76 (289)
T ss_pred ccCCCEEEEE----------EcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEE
Confidence 4556677766 67788888888888999999987543 235677777 499999999999999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+|++.. .+....+.. |.+.|.+++|+|+++.+++++.|+.+++|++..++....+..| ...+.++.++|+
T Consensus 77 i~~~~~-~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 146 (289)
T cd00200 77 LWDLET-GECVRTLTG--------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPD 146 (289)
T ss_pred EEEcCc-ccceEEEec--------cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC-CCcEEEEEEcCc
Confidence 999987 566777776 8889999999999999999998999999999988888888876 667999999998
Q ss_pred CCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (696)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (696)
+ ..++++. .+.+|+...++.+.....|...+..+.+ ++.+++++.++.+++|++..+..
T Consensus 147 ~----~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~----------- 211 (289)
T cd00200 147 G----TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC----------- 211 (289)
T ss_pred C----CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----------
Confidence 6 6776654 8899999988888888788777755444 55788888899999999865443
Q ss_pred cceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeeeC--cEEEE
Q 005459 436 ELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWLG--KIIVV 511 (696)
Q Consensus 436 ~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~~--~~lv~ 511 (696)
...+..|..+|.+++|+|++.++++++.+|.+ +|+..+++-. .+. .....+..++|.+ ..+++
T Consensus 212 ---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 212 ---------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS----GHTNSVTSLAWSPDGKRLAS 278 (289)
T ss_pred ---------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc----ccCCcEEEEEECCCCCEEEE
Confidence 33455788899999999999999999989999 9999876532 222 1222477899986 56666
Q ss_pred EEeecCCCeEEEEEee
Q 005459 512 CNYIDSSNTYELLFYP 527 (696)
Q Consensus 512 ~~~~~~~~~~~lr~y~ 527 (696)
+ +.+..+++|+
T Consensus 279 ~-----~~d~~i~iw~ 289 (289)
T cd00200 279 G-----SADGTIRIWD 289 (289)
T ss_pred e-----cCCCeEEecC
Confidence 5 3456888884
No 49
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.9e-23 Score=189.01 Aligned_cols=265 Identities=19% Similarity=0.221 Sum_probs=211.3
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
..+.+++. +.||-||++..+++.|.+||+|+.-. +.++++..+ |...|.+++-+.|+..+|+|+.|+.+.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r-g~liktYsg--------hG~EVlD~~~s~Dnskf~s~GgDk~v~ 84 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-GALIKTYSG--------HGHEVLDAALSSDNSKFASCGGDKAVQ 84 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc-cceeeeecC--------CCceeeeccccccccccccCCCCceEE
Confidence 46788998 99999999999999999999999987 899999999 999999999999999999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC--ceEEEEecCCcceEEEEec-ceeee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG--YRLYAIEEGSSERVLIFSF-GKCCL 406 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~--~~l~~~~~~~~~~v~~~~~-~~~~~ 406 (696)
+||+.+++....+++| ...|+.++|..+. ..++||+ ++++||-+. .+.+.++....+.|..+.. ...++
T Consensus 85 vwDV~TGkv~Rr~rgH-~aqVNtV~fNees----SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGH-LAQVNTVRFNEES----SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred EEEcccCeeeeecccc-cceeeEEEecCcc----eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 9999999999999999 7889999998877 7888888 899999764 5677777777788888888 77899
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
+|+.||+++.+++..|.. -..|.+| ||++++||+||+...+++-|+++ +-|-.+|+.
T Consensus 160 aGS~DGtvRtydiR~G~l--------------------~sDy~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTL--------------------SSDYFGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred eeccCCcEEEEEeeccee--------------------ehhhcCC--cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 999999999999988775 4567766 89999999999999999999999 999999973
Q ss_pred E-ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE----ccCCEEEEEE
Q 005459 486 R-VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD----VYEDYILVTY 560 (696)
Q Consensus 486 ~-~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~----~~~~~llv~~ 560 (696)
- .+.. .+..++.+....-..+..|++| +++..+-||+.. +...+...++++.|+..+ |..+.++++.
T Consensus 218 L~sYkG-hkn~eykldc~l~qsdthV~sg----SEDG~Vy~wdLv---d~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 218 LKSYKG-HKNMEYKLDCCLNQSDTHVFSG----SEDGKVYFWDLV---DETQISKLSVVSTVIVTDLSCHPTMDDFITAT 289 (307)
T ss_pred HHHhcc-cccceeeeeeeecccceeEEec----cCCceEEEEEec---cceeeeeeccCCceeEEeeecccCccceeEec
Confidence 2 1211 1223344443322334444432 566789999764 444555566666564443 4455566655
Q ss_pred cC
Q 005459 561 RP 562 (696)
Q Consensus 561 ~d 562 (696)
..
T Consensus 290 ~~ 291 (307)
T KOG0316|consen 290 GH 291 (307)
T ss_pred CC
Confidence 43
No 50
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=2.1e-22 Score=210.83 Aligned_cols=417 Identities=15% Similarity=0.120 Sum_probs=251.8
Q ss_pred CCceEEEEEeCCcEEEEEccCeEEEeecCCceee----EEEeecCh----------------------------------
Q 005459 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVR----LGKYKRDS---------------------------------- 61 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~----l~~~~r~~---------------------------------- 61 (696)
+.+.+++||.||.+|++++...|.+|++. .+.+ +-...|+.
T Consensus 166 s~Vsav~fsEdgSYfvT~gnrHvk~wyl~-~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLv 244 (1080)
T KOG1408|consen 166 SVVSAVAFSEDGSYFVTSGNRHVKLWYLQ-IQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLV 244 (1080)
T ss_pred eeEEEEEEccCCceeeeeeeeeEEEEEee-ccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEeccccee
Confidence 56777999999999999999999999985 3220 10001110
Q ss_pred --------HHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeee---eEEEeeeccccc
Q 005459 62 --------ESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKI---SLVLNEQLPFAE 130 (696)
Q Consensus 62 --------~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~ 130 (696)
....+-..-.+-+.+-..++|+++.++|.|+||+.++-.....++....-+..+.++ +-.+.+..+..-
T Consensus 245 EFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 245 EFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred eechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 000000000112223357899999999999999987543221111111111111110 000111111111
Q ss_pred cceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCccc
Q 005459 131 KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSA 210 (696)
Q Consensus 131 ~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~ 210 (696)
.+...+.|....+.+.+--.|..+++|+...-..... .....-|.+.
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk---------------------------------~~s~lyHS~c 371 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK---------------------------------CSSMLYHSAC 371 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccc---------------------------------eeeeeeccce
Confidence 1333344555667777777788888855443221100 0112234555
Q ss_pred EEEEEEcc-Cc-ceEEEEEeCCcEEEEeeccCCceeeeeeec---cee--------------------------------
Q 005459 211 IIWLELCL-PM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKI---DKE-------------------------------- 253 (696)
Q Consensus 211 i~~~~~~~-~~-~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~-------------------------------- 253 (696)
|.+++--| .+ ....+..|.|- +.+++.|+||++|+.... +.+
T Consensus 372 iW~Ve~~p~nv~~~~~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdk 450 (1080)
T KOG1408|consen 372 IWDVENLPCNVHSPTAACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDK 450 (1080)
T ss_pred eeeeccccccccCcccccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccc
Confidence 66665433 22 12233445554 677788999999987631 100
Q ss_pred -----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC---CCCeEEE
Q 005459 254 -----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP---DNSAFAV 324 (696)
Q Consensus 254 -----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp---dg~~las 324 (696)
.+..-.++ +++||+|+.||+|..-|++|||++.. .+....+.. |...|.|+.||- ..++||+
T Consensus 451 a~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eA--------HesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 451 ALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEA--------HESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred cchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheec--------ccceeEEEeecCchhhhHhhhh
Confidence 00112344 99999999999999999999999987 666666777 999999999995 4579999
Q ss_pred EEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCC----ceEEEEecC--CcceE
Q 005459 325 GWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYG----YRLYAIEEG--SSERV 396 (696)
Q Consensus 325 g~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~----~~l~~~~~~--~~~~v 396 (696)
++.|+-|.|+|+.. ..++.++.+| .++|+++.|--++ .+.+.+-+|. +...+.... +.++..... .+..+
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~H-SssITsvKFa~~g-ln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTl 599 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGH-SSSITSVKFACNG-LNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTL 599 (1080)
T ss_pred ccCCceEEEEecccccchhhhhccc-ccceeEEEEeecC-CceEEEeccCchhhheehhccccCceeccccccccccceE
Confidence 99999999999964 4577889888 7789999986554 1223344443 322332211 222221110 11233
Q ss_pred --EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc--e-----------------------eEEeecCeee
Q 005459 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL--K-----------------------ILHLNLPVSY 448 (696)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~--~-----------------------w~~~~~~~~~ 448 (696)
+.+++ .|.++++|.|..++++++..+++.-.+....+-... + .....+....
T Consensus 600 YDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 34444 777888888888888887777665444433322110 0 0122345566
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
.+|...|..+.|++|-++|.+++.||.| +|.+..
T Consensus 680 ~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 7999999999999999999999999999 999854
No 51
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.3e-22 Score=209.62 Aligned_cols=264 Identities=20% Similarity=0.269 Sum_probs=193.7
Q ss_pred CcEEEEEccCeEEEeecCCcee-eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCC
Q 005459 31 NGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (696)
Q Consensus 31 g~lla~~~~~~v~iW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~ 109 (696)
...||++....|++|+.....+ .+..+. ...++++.|+|||+.||+++.+|.+.|||+...+.....
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~--------~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~---- 255 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG--------EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL---- 255 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC--------CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc----
Confidence 3478888888999999863321 222221 366889999999999999999999999999744321111
Q ss_pred CCCceeeeeeEEEeeeccccc-cceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459 110 PSGLFFIKISLVLNEQLPFAE-KGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (696)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~-~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~ 188 (696)
.+ +...|.+++.....+.+|+.+|.|..+
T Consensus 256 -------------------~~~h~~rvg~laW~~~~lssGsr~~~I~~~------------------------------- 285 (484)
T KOG0305|consen 256 -------------------RGSHASRVGSLAWNSSVLSSGSRDGKILNH------------------------------- 285 (484)
T ss_pred -------------------cCCcCceeEEEeccCceEEEecCCCcEEEE-------------------------------
Confidence 11 344555555555556666666665442
Q ss_pred CcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EE
Q 005459 189 GLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-AS 263 (696)
Q Consensus 189 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~ 263 (696)
|....+ .+.+|..-|| +.
T Consensus 286 ---------------------------------------------------------dvR~~~~~~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 286 ---------------------------------------------------------DVRISQHVVSTLQGHRQEVCGLK 308 (484)
T ss_pred ---------------------------------------------------------EEecchhhhhhhhcccceeeeeE
Confidence 221111 1257899999 99
Q ss_pred EcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEE--EcCCcEEEEEccCCe
Q 005459 264 IAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG--WKSRGLTVWSVSGCR 340 (696)
Q Consensus 264 ~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg--~~Dg~v~vW~~~~~~ 340 (696)
|++|++++|+|+.|+.+.|||... .+++..+.. |+++|..++|+| ....||+| ..|+.|++||+.++.
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~-~~p~~~~~~--------H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLS-PEPKFTFTE--------HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCC-ccccEEEec--------cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 999999999999999999999966 677778888 999999999999 77799997 469999999999988
Q ss_pred eEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeee
Q 005459 341 LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVI 420 (696)
Q Consensus 341 ~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~ 420 (696)
.+..+... +.++.+.|.....|++.+..- .++.+.+|...
T Consensus 380 ~i~~vdtg----------------------sQVcsL~Wsk~~kEi~sthG~------------------s~n~i~lw~~p 419 (484)
T KOG0305|consen 380 RIDSVDTG----------------------SQVCSLIWSKKYKELLSTHGY------------------SENQITLWKYP 419 (484)
T ss_pred EecccccC----------------------CceeeEEEcCCCCEEEEecCC------------------CCCcEEEEecc
Confidence 76444322 113667787777776665422 23355566655
Q ss_pred ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
+... ...+.+|+.+|.++++||||..+++|+.|.++ +|++-.
T Consensus 420 s~~~--------------------~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 420 SMKL--------------------VAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ccce--------------------eeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 4332 55778999999999999999999999999999 988754
No 52
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.8e-21 Score=205.37 Aligned_cols=332 Identities=12% Similarity=0.171 Sum_probs=249.9
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (696)
Q Consensus 137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (696)
+|.|.+-.++++..+|.|+.|+.. ...-. ....+|+++|+.+.
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYR--M~tli----------------------------------~rFdeHdGpVRgv~- 58 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYR--MGTLI----------------------------------DRFDEHDGPVRGVD- 58 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhh--hhhHH----------------------------------hhhhccCCccceee-
Confidence 455667789999999999984432 21100 12346788888876
Q ss_pred ccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee
Q 005459 217 CLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI 292 (696)
Q Consensus 217 ~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~ 292 (696)
|.|++-+++++++|..|++|+....+++ .||-+-|+ +.|++...+|.+++.|.|||||++.+ ..++
T Consensus 59 ---------FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-r~~i 128 (1202)
T KOG0292|consen 59 ---------FHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-RKCI 128 (1202)
T ss_pred ---------ecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-CceE
Confidence 7788889999999999999998877664 79999999 99999999999999999999999998 8999
Q ss_pred eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-----------------------------eEE
Q 005459 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-----------------------------LMS 343 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-----------------------------~~~ 343 (696)
..+.+ |.--|.|..|.|....++|++-|.+|||||+.+-+ ..+
T Consensus 129 avltG--------HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 129 AVLTG--------HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred EEEec--------CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 99999 99999999999999999999999999999984311 123
Q ss_pred EeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEE--EecCCcceE--EEEec-ceeeeeccCCCCce
Q 005459 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYA--IEEGSSERV--LIFSF-GKCCLNRGVSGMTY 415 (696)
Q Consensus 344 ~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~--~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~ 415 (696)
.+.|| ...|+.++|+|.- ..++||+ .+++|.....+.|- +..||.+.| +.|++ ...++|.+.|++++
T Consensus 201 VLEGH-DRGVNwaAfhpTl----pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksir 275 (1202)
T KOG0292|consen 201 VLEGH-DRGVNWAAFHPTL----PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIR 275 (1202)
T ss_pred eeccc-ccccceEEecCCc----ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEE
Confidence 45566 7779999999987 8889998 88899887766655 457899998 55666 78899999999999
Q ss_pred eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCcccee
Q 005459 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQ 495 (696)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~ 495 (696)
+||+..... .+++...+..-+.++..|.++.+|.|-..|.++|.++..|
T Consensus 276 VwDm~kRt~--------------------v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleREr----------- 324 (1202)
T KOG0292|consen 276 VWDMTKRTS--------------------VQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------- 324 (1202)
T ss_pred EEecccccc--------------------eeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccC-----------
Confidence 999876554 5678888889999999999999998888888888765322
Q ss_pred eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEee---cCCcc--EEEEccCCEEEEEE--cCceEEE
Q 005459 496 KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKS---LLAKP--IVMDVYEDYILVTY--RPFDVHI 567 (696)
Q Consensus 496 ~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~---~~~~~--l~~~~~~~~llv~~--~d~~~~l 567 (696)
. ..+-+++.|.-. ++..||.|+.. .-+.. ++.... +..+| |+.+|-++.+++.+ +++..-|
T Consensus 325 p----a~~v~~n~LfYv------kd~~i~~~d~~t~~d~~-v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L 393 (1202)
T KOG0292|consen 325 P----AYAVNGNGLFYV------KDRFIRSYDLRTQKDTA-VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYEL 393 (1202)
T ss_pred c----eEEEcCCEEEEE------ccceEEeeeccccccce-eEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEE
Confidence 1 223344444432 24678888765 22222 222111 11233 55567777777732 3344444
Q ss_pred EEE
Q 005459 568 FHV 570 (696)
Q Consensus 568 ~~~ 570 (696)
|.+
T Consensus 394 ~~i 396 (1202)
T KOG0292|consen 394 VQI 396 (1202)
T ss_pred EEe
Confidence 444
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=4.2e-22 Score=195.66 Aligned_cols=268 Identities=17% Similarity=0.189 Sum_probs=206.9
Q ss_pred ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (696)
Q Consensus 132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (696)
+.-|+++...++.|+.|+.||.+++|+-.|+.... ..++...|
T Consensus 105 dDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~~-------------------------------------~~Ght~~i 147 (423)
T KOG0313|consen 105 DDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIKT-------------------------------------IVGHTGPI 147 (423)
T ss_pred hhhhhhhcccCceEEEeecCCeeEEEecCCceEEE-------------------------------------EecCCcce
Confidence 33455665568999999999999997655543322 22344445
Q ss_pred EEEEEccCcceEEEEEeCC--cEEEEeeccCCceeeeeeeccee-------cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459 212 IWLELCLPMRLLFVLYSNG--QLMSCSVSKKGLKLAEFIKIDKE-------LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (696)
Q Consensus 212 ~~~~~~~~~~~~~~~s~dG--~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~v~-v~~sp~~~~la~g~~dg~v~ 281 (696)
.++. ++.++. ..+++++.|.++++|....++.. .||..+|- ++.++++..+++|+.|.+++
T Consensus 148 k~v~---------~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lk 218 (423)
T KOG0313|consen 148 KSVA---------WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLK 218 (423)
T ss_pred eeeE---------EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceee
Confidence 5443 233332 26888899999999987765432 59999987 99999999999999999999
Q ss_pred EEEccCCC------------------------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 282 LYDLAESA------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 282 vw~~~~~~------------------------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
+|+..... .++-++. +|+++|.++.|++ ...+.+++.|++|++||+.
T Consensus 219 iWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~--------GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 219 IWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE--------GHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccCCCccccccccchhhhhhhhhhhcccccCceEEec--------ccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 99932200 1222333 4999999999998 7789999999999999999
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCce---EEEEecCCcceE--EEEec--ceeeee
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERV--LIFSF--GKCCLN 407 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v--~~~~~--~~~~~s 407 (696)
++.+..++.+. .+++++..+|.. ..+++|+ .+++||++++. ....+.+|.+.| +..++ -..+++
T Consensus 290 tg~~~~~~~~~--ksl~~i~~~~~~----~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 290 TGGLKSTLTTN--KSLNCISYSPLS----KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred cccceeeeecC--cceeEeeccccc----ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEE
Confidence 99998888764 568999999987 8899888 88999997643 345667999988 44455 567899
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
++.|+++++||+...... .....+|+..|.++.|+ +|.++++||.|..+ ++.-
T Consensus 364 ~S~D~t~klWDvRS~k~p-------------------lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTKAP-------------------LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EecCCeEEEEEeccCCCc-------------------ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 999999999999887752 34567899999999995 56799999999999 8753
No 54
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=8.5e-23 Score=202.08 Aligned_cols=278 Identities=18% Similarity=0.184 Sum_probs=207.3
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
+..|.+-|. +.|||+|++||+|+.|.+..+|.+.... ++.+++.+ |..+|..+.||||.++|.+++.|.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg--------h~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG--------HSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec--------ccCceEEEEECCCCCeEEecCchH
Confidence 367999999 9999999999999999999999987633 34677777 999999999999999999999999
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE--ec-ce
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF--SF-GK 403 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~--~~-~~ 403 (696)
.+++||+.++.+...++.....++++++|.||+ ..+++|+ ++..|+.++..+-.=..-...+|+.+ .+ ++
T Consensus 292 ~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg----~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG----FRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred heeeccCCcchhhhhcccCcCCCcceeEEccCC----ceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCc
Confidence 999999999998877765435679999999999 8899888 88899998765322111123456444 44 89
Q ss_pred eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 404 CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 404 ~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
.+++.+.|..+++.+.....++ .......||.+.++|.||+++.+-=.+..+ +||++.
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr---------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDR---------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEE 426 (519)
T ss_pred EEEEEecccceeeechhhhhhh---------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence 9999999998888776655543 123345689999999999999999999999 999984
Q ss_pred CceEecCC-ccceee-eEEE-eEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEc-cCCEE
Q 005459 483 KKWRVFGD-ITQEQK-IQSK-GLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDV-YEDYI 556 (696)
Q Consensus 483 g~w~~f~~-~~~e~~-~~v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~-~~~~l 556 (696)
|++... ..+.+. |.++ ++...++-.|+. .+++.++++|.|. ++......|...+- .++-+| +-.++
T Consensus 427 --~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS----GSED~kvyIWhr~sgkll~~LsGHs~~vN--cVswNP~~p~m~ 498 (519)
T KOG0293|consen 427 --NKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS----GSEDSKVYIWHRISGKLLAVLSGHSKTVN--CVSWNPADPEMF 498 (519)
T ss_pred --hhHHHHhhcccccceEEEeccCCCCcceEEe----cCCCceEEEEEccCCceeEeecCCcceee--EEecCCCCHHHh
Confidence 443111 123333 4455 455555455544 2567899999996 34333333444332 366666 44567
Q ss_pred EEEEcCceEEEEEEE
Q 005459 557 LVTYRPFDVHIFHVK 571 (696)
Q Consensus 557 lv~~~d~~~~l~~~~ 571 (696)
+.++.|++|+||...
T Consensus 499 ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 499 ASASDDGTIRIWGPS 513 (519)
T ss_pred hccCCCCeEEEecCC
Confidence 779999999999653
No 55
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.89 E-value=1.7e-23 Score=200.74 Aligned_cols=266 Identities=14% Similarity=0.191 Sum_probs=209.2
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeecceec-----------CCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCC
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL-----------GSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA 289 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~-----------~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~ 289 (696)
.++.|+|||+++++++-|+-+.+|+..+++... -+.+++ |+.||.|...+|+|+.||.|+||.+.+ +
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-G 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET-G 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec-c
Confidence 357799999999999999999999998875431 155666 499999999999999999999999999 8
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
.+++.+.. +|+..|+|+.||.|+..+.+++.|.++++--+..++++..++|| .+.|+...|.++| ..+
T Consensus 296 ~ClRrFdr-------AHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH-sSyvn~a~ft~dG----~~i 363 (508)
T KOG0275|consen 296 QCLRRFDR-------AHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGH-SSYVNEATFTDDG----HHI 363 (508)
T ss_pred hHHHHhhh-------hhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCc-cccccceEEcCCC----CeE
Confidence 88888874 39999999999999999999999999999999999999999999 7889999999999 888
Q ss_pred ecce---eeEEEcCCCceEEEEecCCc--ceEEE--Eec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459 370 MSGT---SMMQWDEYGYRLYAIEEGSS--ERVLI--FSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (696)
Q Consensus 370 ~sg~---~~~~W~~~~~~l~~~~~~~~--~~v~~--~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (696)
++++ ++++|+..+.+++.+++... -.|.. +-| ...++.++..+++.+-++ ..+
T Consensus 364 isaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~--qGQ---------------- 425 (508)
T KOG0275|consen 364 ISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM--QGQ---------------- 425 (508)
T ss_pred EEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec--cce----------------
Confidence 7776 99999999999988876422 22311 112 445666677776655332 111
Q ss_pred EeecCeeee---cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeec
Q 005459 441 HLNLPVSYI---SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYID 516 (696)
Q Consensus 441 ~~~~~~~~~---~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~ 516 (696)
+..++. ...+..-++++||.|.++...|+|+.. .|++.+|+...+... +|++ |.|+.-+++--+.|.|.
T Consensus 426 ---vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-hEkd--vIGl~HHPHqNllAsYs- 498 (508)
T KOG0275|consen 426 ---VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-HEKD--VIGLTHHPHQNLLASYS- 498 (508)
T ss_pred ---EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-cccc--ccccccCcccchhhhhc-
Confidence 233332 123456678999999999999999999 999999987766543 3443 77888887766556564
Q ss_pred CCCeEEEEEee
Q 005459 517 SSNTYELLFYP 527 (696)
Q Consensus 517 ~~~~~~lr~y~ 527 (696)
.+.-+++|.
T Consensus 499 --EDgllKLWk 507 (508)
T KOG0275|consen 499 --EDGLLKLWK 507 (508)
T ss_pred --ccchhhhcC
Confidence 345677773
No 56
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=183.14 Aligned_cols=247 Identities=15% Similarity=0.231 Sum_probs=189.0
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEe
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
+++..||+.+++++.|+++++|+....... .+|.+.+- +.++| ...++|+++.|.+|++||++. ++++..+.
T Consensus 26 v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~-~k~~~~i~ 104 (313)
T KOG1407|consen 26 VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS-GKCTARIE 104 (313)
T ss_pred EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc-CcEEEEee
Confidence 447889999999999999999998765332 67888887 88887 578999999999999999998 78887776
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--- 373 (696)
. ++.=.-+.|+|||++++++..|..|...|..+.+.+.+.+.. -.+..+.|+-++ +.-.+-+|-
T Consensus 105 ~---------~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--~e~ne~~w~~~n--d~Fflt~GlG~v 171 (313)
T KOG1407|consen 105 T---------KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--FEVNEISWNNSN--DLFFLTNGLGCV 171 (313)
T ss_pred c---------cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--ceeeeeeecCCC--CEEEEecCCceE
Confidence 5 555667899999999999999999999999888877665542 235556665333 112233442
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (696)
.++.|- .-+.+..++.|....+++. + ++.+++|+.|..+.+||+..--. ...+..
T Consensus 172 ~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC--------------------~R~isR 229 (313)
T KOG1407|consen 172 EILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC--------------------ERCISR 229 (313)
T ss_pred EEEecc--ccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhh--------------------heeecc
Confidence 455553 4566777788887775554 4 99999999999999999754332 456778
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc--eEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459 451 QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK--WRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (696)
Q Consensus 451 ~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~--w~~f~~~~~e~~~~v~~~~w~~~~lv~~ 512 (696)
+.||||.++||-||++||+|++|..| +=++++|. |++ ..+. ....++|+++..+.|
T Consensus 230 ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI----~~~~--~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 230 LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEI----PCEG--PTFTVAWHPKRPLLA 288 (313)
T ss_pred ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEe----eccC--CceeEEecCCCceee
Confidence 89999999999999999999999999 99999986 322 1111 133689998766655
No 57
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=4.8e-23 Score=208.16 Aligned_cols=255 Identities=16% Similarity=0.216 Sum_probs=192.9
Q ss_pred ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
+.||.+.|. +.|.| .+.||++|+.|+.|+||++-+.+++++++.+ |..+|.+++|+++|..+.|++.|+.
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g--------H~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG--------HRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc--------chhhhhhhhccccCCeeeeeeccee
Confidence 378999998 99999 8999999999999999999887899999999 9999999999999999999999999
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec---ceee
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCC 405 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~ 405 (696)
+++||+++|++...+... ...+++.|+|++ ....++.|+ .++.||.++++++.....|-+.+..+.| ++..
T Consensus 282 lKlwDtETG~~~~~f~~~--~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLD--KVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeccccceEEEEEecC--CCceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceE
Confidence 999999999999888754 457899999997 224444444 8999999999988888778888866666 8999
Q ss_pred eeccCCCCceeeeeeecCCeEEEEec--CCCC------ccee-------------E-----EeecCeeeecCCCc--eEE
Q 005459 406 LNRGVSGMTYARQVIYGEDRLLVVQS--EDTD------ELKI-------------L-----HLNLPVSYISQNWP--VQH 457 (696)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~--~~~~------~~~w-------------~-----~~~~~~~~~~~~~~--I~~ 457 (696)
++.+.|+++++|+....-.--++..- +..| .-.| . ....-..|.+|.-+ -..
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~ 437 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQ 437 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceee
Confidence 99999999999987654332111110 0000 0111 0 00111245667543 345
Q ss_pred EEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc---EEEEEEeecCCCeEEEEEee
Q 005459 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK---IIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 458 va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~---~lv~~~~~~~~~~~~lr~y~ 527 (696)
+.|||||++|++|..||.+ +||.++-+ ++... +-.+-.|.++.|++. .+++| +-++.|++|.
T Consensus 438 v~fSpDG~~l~SGdsdG~v~~wdwkt~k--l~~~l-kah~~~ci~v~wHP~e~Skvat~-----~w~G~Ikiwd 503 (503)
T KOG0282|consen 438 VDFSPDGRTLCSGDSDGKVNFWDWKTTK--LVSKL-KAHDQPCIGVDWHPVEPSKVATC-----GWDGLIKIWD 503 (503)
T ss_pred EEEcCCCCeEEeecCCccEEEeechhhh--hhhcc-ccCCcceEEEEecCCCcceeEec-----ccCceeEecC
Confidence 7999999999999999999 99988743 22221 112335889999854 45555 2346888884
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=2.1e-22 Score=192.57 Aligned_cols=238 Identities=16% Similarity=0.212 Sum_probs=179.1
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEecC
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRR 277 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~d 277 (696)
+++|...|.+++ |.|...++++++.|++++++|..++... ......+. ++|+|.|.+|++|...
T Consensus 168 lYDH~devn~l~----------FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdH 237 (430)
T KOG0640|consen 168 LYDHVDEVNDLD----------FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDH 237 (430)
T ss_pred hhhccCccccee----------ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCC
Confidence 344444566655 7788889999999999999998765322 12234555 9999999999999999
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec-ccccceecc
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ-ISLSSISSP 356 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~~~~v~~~ 356 (696)
-++++||+++ .++...-.. ...|++.|+++.+|+.|+..++|+.||.|++||--.++|+.++.. |+.+.|.+.
T Consensus 238 p~~rlYdv~T-~QcfvsanP-----d~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 238 PTLRLYDVNT-YQCFVSANP-----DDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred CceeEEeccc-eeEeeecCc-----ccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 9999999998 443322211 124999999999999999999999999999999999999999986 777889999
Q ss_pred cccCCCCCCccceecce---eeEEEcCCCceEEEEecCC--cceE---E--EEec-ceeeeec-cCCCCceeeeeeecCC
Q 005459 357 IVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGS--SERV---L--IFSF-GKCCLNR-GVSGMTYARQVIYGED 424 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~--~~~v---~--~~~~-~~~~~s~-~~d~~~~~w~~~~~~~ 424 (696)
.|..++ +++++.. .+++|.+.+++++....|. .++. . .|.- ..+++.- -..+++..||..+++.
T Consensus 312 ~Ftkn~----kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr 387 (430)
T KOG0640|consen 312 VFTKNG----KYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR 387 (430)
T ss_pred EEccCC----eEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh
Confidence 999998 8887765 8999999999998877552 1111 1 1111 2222221 1234556677666554
Q ss_pred eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
. -.--++||+++|++.-||.+.-+.++|.|-.+ .|-.
T Consensus 388 ~-------------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 388 V-------------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred h-------------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 2 22235899999999999999999999999999 8853
No 59
>PTZ00421 coronin; Provisional
Probab=99.89 E-value=6.4e-21 Score=208.09 Aligned_cols=225 Identities=14% Similarity=0.130 Sum_probs=170.5
Q ss_pred ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEE
Q 005459 253 ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFA 323 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~la 323 (696)
+.+|.+.|. ++|+| ++++||+|+.||+|++||+.+.+ ..+..+.+ |...|.+++|+|++ +.|+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g--------H~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG--------HTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecC--------CCCcEEEEEeCcCCCCEEE
Confidence 468998887 99999 89999999999999999997622 24556666 99999999999986 6999
Q ss_pred EEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE---E
Q 005459 324 VGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV---L 397 (696)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v---~ 397 (696)
+|+.|++|++||+..+....++.+| ...|.+++|+|++ ..+++|+ ++++||+++++.+....+|.... .
T Consensus 143 Sgs~DgtVrIWDl~tg~~~~~l~~h-~~~V~sla~spdG----~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 143 SAGADMVVNVWDVERGKAVEVIKCH-SDQITSLEWNLDG----SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEeCCCEEEEEECCCCeEEEEEcCC-CCceEEEEEECCC----CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEE
Confidence 9999999999999999989899888 6779999999998 8888887 89999999999888887776542 3
Q ss_pred EEec-ceeeeecc----CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEEcCCCCEEEEEe
Q 005459 398 IFSF-GKCCLNRG----VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAASKDGMFLAVAG 471 (696)
Q Consensus 398 ~~~~-~~~~~s~~----~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~s~dG~~la~ag 471 (696)
.+.+ ...+++++ .|+.+++||+...... ..... .+...+....|++|+++|++||
T Consensus 218 ~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p-------------------~~~~~~d~~~~~~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 218 LWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP-------------------YSTVDLDQSSALFIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc-------------------eeEeccCCCCceEEEEEcCCCCEEEEEE
Confidence 3333 44555443 5789999998765441 11111 2234566778999999999998
Q ss_pred C-CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEE
Q 005459 472 L-HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVV 511 (696)
Q Consensus 472 ~-dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~ 511 (696)
. ||.+ +||+.+++.... .+... .-..+++++.+...+-
T Consensus 279 kgDg~Iriwdl~~~~~~~~-~~~~s-~~~~~g~~~~pk~~~d 318 (493)
T PTZ00421 279 KGEGNIRCFELMNERLTFC-SSYSS-VEPHKGLCMMPKWSLD 318 (493)
T ss_pred eCCCeEEEEEeeCCceEEE-eeccC-CCCCcceEeccccccc
Confidence 5 9999 999998874322 11100 0124577777655443
No 60
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=1.2e-19 Score=194.22 Aligned_cols=335 Identities=16% Similarity=0.217 Sum_probs=233.9
Q ss_pred EEEEEEccCc-ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459 211 IIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (696)
Q Consensus 211 i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~ 285 (696)
|+++.|.+++ |..+..+.+|+ +++|+..+++.+ +++.+.++ +.-+|--..+|+|..||+|.++++
T Consensus 162 Ital~HP~TYLNKIvvGs~~G~----------lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNl 231 (910)
T KOG1539|consen 162 ITALLHPSTYLNKIVVGSSQGR----------LQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNL 231 (910)
T ss_pred eeeEecchhheeeEEEeecCCc----------EEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEc
Confidence 8888877776 55555555555 555777776554 45555555 888999999999999999999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCC
Q 005459 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDC 364 (696)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~ 364 (696)
+. .+.+.+++. ..|+|++++|.-||. .||+|...|.+.+||+...++...++..|..++....|-|..
T Consensus 232 K~-dkil~sFk~--------d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-- 300 (910)
T KOG1539|consen 232 KF-DKILMSFKQ--------DWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-- 300 (910)
T ss_pred cc-CcEEEEEEc--------cccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC--
Confidence 98 788888885 469999999999998 556677778899999999999999987557778888888775
Q ss_pred Cccceecce---eeEEEcCCC----ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEe---
Q 005459 365 KYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ--- 430 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~--- 430 (696)
..+++.. +.+.|-.++ .+++....||..+..++.| +..+.+.+.|++.+.+.+.+...+--+.+
T Consensus 301 --pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~ 378 (910)
T KOG1539|consen 301 --PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHN 378 (910)
T ss_pred --ceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccc
Confidence 4555544 666665442 3677788899888766665 78899999999887776543221100000
Q ss_pred --c----------------------CCCCc----------------cee--------EEeecCeeeecCCCceEEEEEcC
Q 005459 431 --S----------------------EDTDE----------------LKI--------LHLNLPVSYISQNWPVQHVAASK 462 (696)
Q Consensus 431 --~----------------------~~~~~----------------~~w--------~~~~~~~~~~~~~~~I~~va~s~ 462 (696)
+ ...-+ ..| ++.--|..+......++++++|+
T Consensus 379 ~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~ 458 (910)
T KOG1539|consen 379 KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF 458 (910)
T ss_pred ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec
Confidence 0 00000 123 12222333333446799999999
Q ss_pred CCCEEEEEeCCccE-EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeec----------------------
Q 005459 463 DGMFLAVAGLHGLI-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYID---------------------- 516 (696)
Q Consensus 463 dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~---------------------- 516 (696)
.|++...|...|.| +|++++|..+ .|++ .+..+..|+|++-. +..+|+|++.+
T Consensus 459 CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~ 537 (910)
T KOG1539|consen 459 CGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-SPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSI 537 (910)
T ss_pred cCceEEEeccCCeEEEEEcccCeeeccccc-CccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCc
Confidence 99999999999999 9999999754 4542 22333446665543 44566664431
Q ss_pred --------------CCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 517 --------------SSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 517 --------------~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
..++..|++|+.. .....+-.|..++.+ +.++++|.-|++++-|+.|++|++-
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd--~~FS~DgrWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITD--MTFSPDGRWLISASMDSTIRTWDLP 606 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceee--eEeCCCCcEEEEeecCCcEEEEecc
Confidence 1123455666553 233344456666666 8889999999999999999999864
No 61
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=9e-23 Score=195.77 Aligned_cols=280 Identities=14% Similarity=0.210 Sum_probs=214.8
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.+-|..|||||++|++|+.||-|.|||..+ ++..+-++-..-.--.-+..+|.|+.||.|...||+|+.||.|++|.+.
T Consensus 215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~-GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSVDGFIEVWNYTT-GKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred chhheeeCCCCceEeeccccceeeeehhcc-chhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 345689999999999999999999999987 6554433321111112378899999999999999999999999999999
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVS 411 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d 411 (696)
++.|+..+...|...|+++.|+.|+ ..+.+++ ++++-....++++..+.||..-| ..|.. +..+++++.|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~----SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDN----SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCc----chhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999986558889999999998 7777777 89999999999999999999998 45555 9999999999
Q ss_pred CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee--cCCCceEEEEEcCC-CCEEEEEeCCccE-EEEccCCceEe
Q 005459 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI--SQNWPVQHVAASKD-GMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~--~~~~~I~~va~s~d-G~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
+++++|+..+++. ..+|. +...+|.++-.-|. -..+++.-+..++ +-+++..--+.
T Consensus 370 gtvkvW~~KtteC--------------------~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 370 GTVKVWHGKTTEC--------------------LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred ccEEEecCcchhh--------------------hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 9999999888775 44453 45668888877764 4578888888888 88988877777
Q ss_pred cCCcccee-eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCce
Q 005459 488 FGDITQEQ-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFD 564 (696)
Q Consensus 488 f~~~~~e~-~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~ 564 (696)
|..-.-|. +|....+.=-++.+.+. ..+..+..|+.. .|+.....|...+-. +...|.++.++.++.|+.
T Consensus 430 fsSGkREgGdFi~~~lSpkGewiYci-----gED~vlYCF~~~sG~LE~tl~VhEkdvIG--l~HHPHqNllAsYsEDgl 502 (508)
T KOG0275|consen 430 FSSGKREGGDFINAILSPKGEWIYCI-----GEDGVLYCFSVLSGKLERTLPVHEKDVIG--LTHHPHQNLLASYSEDGL 502 (508)
T ss_pred eccCCccCCceEEEEecCCCcEEEEE-----ccCcEEEEEEeecCceeeeeecccccccc--cccCcccchhhhhcccch
Confidence 76555554 34333444445555543 344566666654 566655555554443 556688888888999999
Q ss_pred EEEEE
Q 005459 565 VHIFH 569 (696)
Q Consensus 565 ~~l~~ 569 (696)
.+||.
T Consensus 503 lKLWk 507 (508)
T KOG0275|consen 503 LKLWK 507 (508)
T ss_pred hhhcC
Confidence 99884
No 62
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=2e-21 Score=191.00 Aligned_cols=262 Identities=12% Similarity=0.132 Sum_probs=205.0
Q ss_pred CcEEEEeeccCCceeeeeeecc--eecCCCCeEE-EEEc-C--CCcEEEEEecCCeEEEEEccCCCce---eeEEeeccC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKID--KELGSGDAVC-ASIA-P--EQQILAVGTRRGVVELYDLAESASL---IRTVSLYDW 300 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~v~-v~~s-p--~~~~la~g~~dg~v~vw~~~~~~~~---~~~~~~~~~ 300 (696)
++.+++++.|+++++|+..-.. ...||.+++. +++- + ...++++++.|.++++|.++..... ++.-++
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G--- 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRG--- 191 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcc---
Confidence 7899999999999999975322 2378999887 5543 3 3346999999999999999873221 222234
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-------------------------CCeeEEEeecccccceec
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-------------------------GCRLMSTIRQISLSSISS 355 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-------------------------~~~~~~~l~~~~~~~v~~ 355 (696)
|.++|-+++-.+||.++++|+.|.++++|+.. .+..+-+|.|| ...|++
T Consensus 192 -----Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH-t~~Vs~ 265 (423)
T KOG0313|consen 192 -----HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH-TEPVSS 265 (423)
T ss_pred -----cccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc-ccceee
Confidence 99999999999999999999999999999931 12356788888 888999
Q ss_pred ccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459 356 PIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (696)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (696)
+.|++. ..+.+++ +++.||++++.+.....+. ..+.+++ + .+.+++||.|..+++||...++..+
T Consensus 266 V~w~d~-----~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~--- 336 (423)
T KOG0313|consen 266 VVWSDA-----TVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV--- 336 (423)
T ss_pred EEEcCC-----CceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCCCCce---
Confidence 999885 4556666 9999999999988877653 3444444 3 7889999999999999999887754
Q ss_pred ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCc
Q 005459 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK 507 (696)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~ 507 (696)
+..+|.+|+..|.++.++|... +|++|+.||++ +||+++-+-.+|....++. .|-.+.|+..
T Consensus 337 --------------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~vdW~~~ 400 (423)
T KOG0313|consen 337 --------------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLSVDWNEG 400 (423)
T ss_pred --------------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEEEeccCC
Confidence 3568999999999999999765 58999999999 9999998767776555533 4778999988
Q ss_pred EEEEEEeecCCCeEEEEEeeCC
Q 005459 508 IIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 508 ~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.+|+.+ +-+..||+|...
T Consensus 401 ~~IvSG----GaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSG----GADNKLRIFKGS 418 (423)
T ss_pred ceEEec----cCcceEEEeccc
Confidence 655542 345789998654
No 63
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-20 Score=202.45 Aligned_cols=294 Identities=10% Similarity=0.093 Sum_probs=213.7
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
|.|..-.++++-..+.|++||-.-+..+ .+|+++|+ ++|+|++.++++|+.|-+|+||+.++ .+++.++.+
T Consensus 17 FHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-rrclftL~G---- 91 (1202)
T KOG0292|consen 17 FHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-RRCLFTLLG---- 91 (1202)
T ss_pred cCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-ceehhhhcc----
Confidence 6777778888888999999998766443 78999999 99999999999999999999999998 889999999
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W 378 (696)
|-.-|+.+.|.+.--.+.|+++|.||+||+..++.+++.+.|| ...|.|.+|+|.. +.++|++ ++++|
T Consensus 92 ----HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptE----DlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 ----HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTE----DLIVSASLDQTVRVW 162 (1202)
T ss_pred ----ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCcc----ceEEEecccceEEEE
Confidence 9999999999999999999999999999999999999999999 8889999999987 8899988 99999
Q ss_pred cCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 379 DEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
|..+-+--....+.-+....-..+..-+-++.|.. +...+.||.-.|+-+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV------------------------------VK~VLEGHDRGVNwa 212 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV------------------------------VKHVLEGHDRGVNWA 212 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCee------------------------------eeeeecccccccceE
Confidence 98764322211110000000000000011111111 123456888889999
Q ss_pred EEcCCCCEEEEEeCCccE-EEEcc-CCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEEEeeCCCCCcc
Q 005459 459 AASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELLFYPRYHLDQS 534 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr~y~~~~l~~~ 534 (696)
||.|.-..+++|+.|..+ +|.++ ++-|.+=.-..|-++ |.++.+++ +.++.. +.+..||+|+-+ ..
T Consensus 213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nn--Vssvlfhp~q~lIlSn-----sEDksirVwDm~---kR 282 (1202)
T KOG0292|consen 213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNN--VSSVLFHPHQDLILSN-----SEDKSIRVWDMT---KR 282 (1202)
T ss_pred EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCC--cceEEecCccceeEec-----CCCccEEEEecc---cc
Confidence 999999999999999999 99985 556875222223222 66777775 555543 667899999875 11
Q ss_pred ceeEEeecC---CccEEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459 535 SLLCRKSLL---AKPIVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (696)
Q Consensus 535 ~~~~~~~~~---~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~ 574 (696)
..+++..-. --.++.-|..+.+. +..|+-+.+|.++.+.
T Consensus 283 t~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 283 TSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERER 324 (1202)
T ss_pred cceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccC
Confidence 112221111 12344445455444 4678888899988653
No 64
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.4e-20 Score=180.88 Aligned_cols=322 Identities=14% Similarity=0.121 Sum_probs=192.9
Q ss_pred EEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeE
Q 005459 42 IELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISL 120 (696)
Q Consensus 42 v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 120 (696)
..=|+..||... +.-....|..| +++++++||.||+.||+++.|+.|++|++.--.. ..|.
T Consensus 63 ~~~~k~~q~~f~---Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr----------- 124 (420)
T KOG2096|consen 63 NDQWKAKQPTFV---HPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHR----------- 124 (420)
T ss_pred hhhhcccCCCcc---cchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhh-----------
Confidence 556776554321 11122334444 5678999999999999999999999999963111 1111
Q ss_pred EEeeeccccccceeEEEeeeCCCeEEEEecCC-cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCcc
Q 005459 121 VLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG-SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAF 199 (696)
Q Consensus 121 ~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g-~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~ 199 (696)
.++ ..+..+......|++|-+.+++...+| .++.+..+..+.+... ++...+.-..
T Consensus 125 ~~R--~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~-----~~~v~~D~~~---------------- 181 (420)
T KOG2096|consen 125 CIR--QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGS-----HHFVHIDNLE---------------- 181 (420)
T ss_pred Hhh--ccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCC-----cccccccccc----------------
Confidence 001 112222334447788888888888876 4565554433333221 1110000000
Q ss_pred ccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecC----CCCeEEEEEcCCCcEEEEEe
Q 005459 200 VSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELG----SGDAVCASIAPEQQILAVGT 275 (696)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~v~v~~sp~~~~la~g~ 275 (696)
.-..++..+.++. +...++++++++.|.++.+|++. ++.+.. ...-..+++||+|++||+++
T Consensus 182 ---f~~kh~v~~i~iG----------iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 182 ---FERKHQVDIINIG----------IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred ---cchhcccceEEEe----------ecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEec
Confidence 0012233344332 44667888889999999999987 554411 11222389999999999999
Q ss_pred cCCeEEEEEccCC--C-----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459 276 RRGVVELYDLAES--A-----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 276 ~dg~v~vw~~~~~--~-----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
---.|+||.+--. + .....+++ |+..|..++|||+...+++.+.||+|++||+.-..-. .
T Consensus 248 FTpDVkVwE~~f~kdG~fqev~rvf~LkG--------H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---~-- 314 (420)
T KOG2096|consen 248 FTPDVKVWEPIFTKDGTFQEVKRVFSLKG--------HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---G-- 314 (420)
T ss_pred CCCCceEEEEEeccCcchhhhhhhheecc--------chhheeeeeeCCCcceeEEEecCCcEEEeeccceEec---C--
Confidence 9999999996321 2 22345666 9999999999999999999999999999998533211 0
Q ss_pred cccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeE
Q 005459 349 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRL 426 (696)
Q Consensus 349 ~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~ 426 (696)
+ |. ..|..|+ .-+ ...+ ...+ +.++| ++.+ ..+...+++++....|++
T Consensus 315 -q----------Dp----k~Lk~g~-~pl-~aag----------~~p~RL~lsP~g~~l-A~s~gs~l~~~~se~g~~-- 364 (420)
T KOG2096|consen 315 -Q----------DP----KILKEGS-APL-HAAG----------SEPVRLELSPSGDSL-AVSFGSDLKVFASEDGKD-- 364 (420)
T ss_pred -C----------Cc----hHhhcCC-cch-hhcC----------CCceEEEeCCCCcEE-EeecCCceEEEEcccCcc--
Confidence 0 10 2222111 000 0001 1122 44445 3332 233334555555555554
Q ss_pred EEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEE
Q 005459 427 LVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILY 478 (696)
Q Consensus 427 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w 478 (696)
+|.--..|...|.+++|++||+|+|+.|++-..+.
T Consensus 365 -----------------~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~ 399 (420)
T KOG2096|consen 365 -----------------YPELEDIHSTTISSISYSSDGKYIATCGDRYVRVI 399 (420)
T ss_pred -----------------chhHHHhhcCceeeEEecCCCcEEeeecceeeeee
Confidence 34444578899999999999999999997765433
No 65
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-19 Score=166.87 Aligned_cols=244 Identities=15% Similarity=0.215 Sum_probs=168.9
Q ss_pred CceEEEEEeCCcEEEEEcc-CeEEEeecC---Cc--------eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC
Q 005459 21 SQQIIYFKVNNGLLLIASP-CHIELWSSS---QH--------KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS 88 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~-~~v~iW~~~---~~--------~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d 88 (696)
..+.|+|.|.|.|.|+.+. .+++|--.- ++ .-+...++|.. .+.|.+++.+|||+|+.||+++.|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~k---hhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNK---HHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeecc---ccCccEEEEEecCccCeEEecCCC
Confidence 4556899999999999864 577776321 00 01123345543 246999999999999999999999
Q ss_pred cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee-----eCCCeEEEEecCCcEEEEecCCcc
Q 005459 89 LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-----SDNKHMLLGLSDGSLYSISWKGEF 163 (696)
Q Consensus 89 g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-----~~~~~llv~t~~g~i~~~~w~~~~ 163 (696)
.+|++.......... .++. ++ +..+++.|..++ ..+..|++....|...++.-+-..
T Consensus 111 k~ik~l~fn~dt~~~--~g~d--------le--------~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNA--TGHD--------LE--------FNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred ceEEEEecccccccc--cCcc--------ee--------eeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999987654332211 1111 11 223444554332 124556666555555444322111
Q ss_pred ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce
Q 005459 164 YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK 243 (696)
Q Consensus 164 ~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~ 243 (696)
...+ ..+.++...|..+ .+=+|-.++++++|++++
T Consensus 173 g~~~----------------------------------~a~sghtghilal-----------yswn~~m~~sgsqdktir 207 (350)
T KOG0641|consen 173 GQGF----------------------------------HALSGHTGHILAL-----------YSWNGAMFASGSQDKTIR 207 (350)
T ss_pred CCcc----------------------------------eeecCCcccEEEE-----------EEecCcEEEccCCCceEE
Confidence 1111 0122444455443 345788999999999999
Q ss_pred eeeeeeccee-----cCC-----CCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE
Q 005459 244 LAEFIKIDKE-----LGS-----GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (696)
Q Consensus 244 ~~~~~~~~~~-----~~~-----~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~ 312 (696)
.||+.-+.+. ..| ..++. +++.|.|++||+|-.|....+||++. ++.++.+.. |+..|+|
T Consensus 208 fwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg-~r~iq~f~p--------hsadir~ 278 (350)
T KOG0641|consen 208 FWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG-GRMIQRFHP--------HSADIRC 278 (350)
T ss_pred EEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC-CceeeeeCC--------CccceeE
Confidence 9998765443 112 24666 99999999999999999999999998 899999998 9999999
Q ss_pred EEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 313 IAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 313 l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+.|||...+|.+|+.|..|++=|+++.
T Consensus 279 vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 279 VRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EEeCCCceEEEEecccceEEEeecccc
Confidence 999999999999999999999999874
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.87 E-value=9.9e-21 Score=206.84 Aligned_cols=269 Identities=16% Similarity=0.208 Sum_probs=219.7
Q ss_pred ceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccE
Q 005459 132 GLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAI 211 (696)
Q Consensus 132 ~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i 211 (696)
+..+.+.....+.+..++.+.+|+. |+....... ...+.+|...+
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~--~~~~~~~~i---------------------------------~~~l~GH~g~V 252 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHL--WDLNNGYLI---------------------------------LTRLVGHFGGV 252 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEE--eecccceEE---------------------------------EeeccCCCCCc
Confidence 3445566666788889999999865 554332211 12345667777
Q ss_pred EEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459 212 IWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 212 ~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~ 288 (696)
..++ +..-+..+++++.|+++++||..++++. .+|...+++ ++-...++++|+.|.+|+||++++
T Consensus 253 ~~l~----------~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~-~~~~~~~~~sgs~D~tVkVW~v~n- 320 (537)
T KOG0274|consen 253 WGLA----------FPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRC-LTIDPFLLVSGSRDNTVKVWDVTN- 320 (537)
T ss_pred eeEE----------EecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEE-EEccCceEeeccCCceEEEEeccC-
Confidence 7766 3344778999999999999999888775 678887762 234556788899999999999998
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~ 368 (696)
+..++++.+ |+++|+++... +..+++|+.|++|+||++..++++.++.+| ...|.++.+.+. +.
T Consensus 321 ~~~l~l~~~--------h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH-~~~V~sl~~~~~-----~~ 384 (537)
T KOG0274|consen 321 GACLNLLRG--------HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGH-TGRVYSLIVDSE-----NR 384 (537)
T ss_pred cceEEEecc--------ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCC-cceEEEEEecCc-----ce
Confidence 889999998 99999999998 889999999999999999999999999998 888999988663 45
Q ss_pred eecce---eeEEEcCCCc-eEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 369 LMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 369 l~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
+.+|+ ++++||+++. +++.++.+|..-+..+.+ .+.+++++.|+++++||...++.
T Consensus 385 ~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~------------------- 445 (537)
T KOG0274|consen 385 LLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGEC------------------- 445 (537)
T ss_pred EEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCce-------------------
Confidence 67777 8999999999 999999999988877777 89999999999999999888876
Q ss_pred cCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 444 LPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 444 ~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
..++.+ |...|.++++. -..+++++.||.+ +||+.+++-
T Consensus 446 -~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 446 -LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred -eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 345555 56778888877 4589999999999 999999864
No 67
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.3e-18 Score=180.94 Aligned_cols=241 Identities=14% Similarity=0.161 Sum_probs=169.8
Q ss_pred CCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (696)
Q Consensus 19 ~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~ 97 (696)
|+....++||.+.+.||++ +++.|.||+.+ +. ++....-...+.+.+-.++|+ +|.+|.....+|.|.-||+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~-~~----w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLS-NN----WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccC-CC----ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 4556668899998888888 78999999996 42 111111111234667789999 67778888899999999998
Q ss_pred ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
..+.... .+..+..+|++ ++.+.++.+++|++||.+..+ .+....-+-
T Consensus 99 ~lk~~~~---~d~~gg~IWsi------------------ai~p~~~~l~IgcddGvl~~~--s~~p~~I~~--------- 146 (691)
T KOG2048|consen 99 TLKQKYN---IDSNGGAIWSI------------------AINPENTILAIGCDDGVLYDF--SIGPDKITY--------- 146 (691)
T ss_pred cCceeEE---ecCCCcceeEE------------------EeCCccceEEeecCCceEEEE--ecCCceEEE---------
Confidence 7654322 12223345543 444556889999999955543 333221110
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceec---
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL--- 254 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~--- 254 (696)
...+...++.+.++. +.++|..++.++.|+.+++||...+....
T Consensus 147 -----------------------~r~l~rq~sRvLsls----------w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 147 -----------------------KRSLMRQKSRVLSLS----------WNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred -----------------------EeecccccceEEEEE----------ecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence 001112245566655 77889999999999999999988765431
Q ss_pred ------CCCC--eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459 255 ------GSGD--AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 255 ------~~~~--~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg 325 (696)
.-.+ .+. +.|- ....||+|...|+|++||... +.+++..+. |.+-|.+|+-++++.+++++
T Consensus 194 ~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~-gTLiqS~~~--------h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIF-GTLIQSHSC--------HDADVLALAVADNEDRVFSA 263 (691)
T ss_pred ecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccC-cchhhhhhh--------hhcceeEEEEcCCCCeEEEc
Confidence 1112 233 4444 566899999999999999988 888888888 99999999999999999999
Q ss_pred EcCCcEEEEEccCCe
Q 005459 326 WKSRGLTVWSVSGCR 340 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~ 340 (696)
+.|+.+.-+...+..
T Consensus 264 Gvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNK 278 (691)
T ss_pred cCCCceEEEEecCCc
Confidence 999999999887663
No 68
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=5.1e-21 Score=206.30 Aligned_cols=248 Identities=15% Similarity=0.153 Sum_probs=172.1
Q ss_pred CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC----------------------cee---e-EEeec---------
Q 005459 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA----------------------SLI---R-TVSLY--------- 298 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~----------------------~~~---~-~~~~~--------- 298 (696)
.|.++|+ +-||+||++||+|++||.||||.+.... .+. . ...+.
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 7999999 9999999999999999999999986500 000 0 00000
Q ss_pred ----cC----------C--CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 299 ----DW----------G--YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 299 ----~~----------~--~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+ | .-.+|++.|.+|+||-+ ++|.+++.|+|||+|++....|+++|.. .+-|+|++|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~H--ndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSH--NDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEec--CCeeEEEEecccC
Confidence 00 0 01289999999999976 5889999999999999999999999863 6789999999986
Q ss_pred CCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (696)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (696)
+ +++ ++||.|+.+++|.+...+-
T Consensus 422 D---ryF------------------------------------iSGSLD~KvRiWsI~d~~V------------------ 444 (712)
T KOG0283|consen 422 D---RYF------------------------------------ISGSLDGKVRLWSISDKKV------------------ 444 (712)
T ss_pred C---CcE------------------------------------eecccccceEEeecCcCee------------------
Confidence 3 444 4556666666666543321
Q ss_pred ecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCc-----cceeeeEEEeEeee---CcEEEEEE
Q 005459 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDI-----TQEQKIQSKGLLWL---GKIIVVCN 513 (696)
Q Consensus 443 ~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~-----~~e~~~~v~~~~w~---~~~lv~~~ 513 (696)
..+..-..-|.+++|+|||++.++|+-+|.. +|++..-+..+-... ...+.-.|+|+... .+.+++.
T Consensus 445 ---v~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT- 520 (712)
T KOG0283|consen 445 ---VDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT- 520 (712)
T ss_pred ---EeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-
Confidence 1111112459999999999999999999999 999877654321110 11111248888876 3334444
Q ss_pred eecCCCeEEEEEeeCC--CCCccceeEEeecCCcc-EEEEccCCEEEEEEcCceEEEEEEE
Q 005459 514 YIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKP-IVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 514 ~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~-l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
+.+..||||+.. .|.+.+-.+.- ..++. -.++.+|.+++.++.|..|.+|++.
T Consensus 521 ----SnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 ----SNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ----cCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 456799999983 45444332222 22322 2455689999999999999999875
No 69
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=1e-20 Score=192.26 Aligned_cols=284 Identities=9% Similarity=0.099 Sum_probs=190.8
Q ss_pred ccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe
Q 005459 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL 149 (696)
Q Consensus 70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t 149 (696)
+.++++-|.|.++++++-|-++++||.+.-...... ++.-.+...+......+++.++.|++.+
T Consensus 170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~----------------fr~l~P~E~h~i~sl~ys~Tg~~iLvvs 233 (641)
T KOG0772|consen 170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS----------------FRQLQPCETHQINSLQYSVTGDQILVVS 233 (641)
T ss_pred EEEeeecCCCceeeeccccceEEEEecccccccchh----------------hhccCcccccccceeeecCCCCeEEEEe
Confidence 467999999999999999999999999743321110 0100111222223334566789999999
Q ss_pred cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCcccc--CCcCCCcccEEEEEEccCcceEEEEE
Q 005459 150 SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVS--DHKFPISSAIIWLELCLPMRLLFVLY 227 (696)
Q Consensus 150 ~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~s 227 (696)
.....++++-+|.....+. .+.| ..+ ....+|-..+++-+| .
T Consensus 234 g~aqakl~DRdG~~~~e~~-----------------KGDQ---------YI~Dm~nTKGHia~lt~g~w----------h 277 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFS-----------------KGDQ---------YIRDMYNTKGHIAELTCGCW----------H 277 (641)
T ss_pred cCcceeEEccCCceeeeee-----------------ccch---------hhhhhhccCCceeeeecccc----------c
Confidence 9999999888876544331 1111 000 011233344455454 4
Q ss_pred eCC-cEEEEeeccCCceeeeeeeccee---------cC-CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEE
Q 005459 228 SNG-QLMSCSVSKKGLKLAEFIKIDKE---------LG-SGDAVCASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTV 295 (696)
Q Consensus 228 ~dG-~~~~~~~~d~~~~~~~~~~~~~~---------~~-~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~ 295 (696)
|+. ..+++++.|+++++|++...+.. .+ ...++.|+||||+++||.||.||.|.+|+...-. .....+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe
Confidence 443 36777889999999998765321 11 1233459999999999999999999999975411 222222
Q ss_pred eeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeec-ccccceecccccCCCCCCccceec
Q 005459 296 SLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 296 ~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+. +|.+ .|+||+||+||++|++-+.|++++|||+... +++.+..+ ...-.-+.+.|||+. +.+++
T Consensus 358 k~-------AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~----kli~T 426 (641)
T KOG0772|consen 358 KD-------AHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD----KLILT 426 (641)
T ss_pred ee-------ccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc----eEEEe
Confidence 22 3877 8999999999999999999999999999643 34444433 112345678999998 88888
Q ss_pred ce---------eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCcee
Q 005459 372 GT---------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYA 416 (696)
Q Consensus 372 g~---------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~ 416 (696)
|. +..+++..+.+.+....-....| ..+++ -+.+..++.||++++
T Consensus 427 GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 427 GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 86 57778888888777665445556 44455 667788888888765
No 70
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=9.4e-21 Score=178.13 Aligned_cols=280 Identities=11% Similarity=0.106 Sum_probs=211.7
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.||+.++. +.+|.+|.+|.+++.|.+..||-..+ ++.+.+..+ |+|.|+|+..+-+.++|++|+.|.++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~G--------HtGavW~~Did~~s~~liTGSAD~t~ 76 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDG--------HTGAVWCCDIDWDSKHLITGSADQTA 76 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecC--------CCceEEEEEecCCcceeeecccccee
Confidence 478999998 99999999999999999999998777 889999999 99999999999999999999999999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--------eeeEEEcCC-------CceEEEEecCCcceE
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--------TSMMQWDEY-------GYRLYAIEEGSSERV 396 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--------~~~~~W~~~-------~~~l~~~~~~~~~~v 396 (696)
++||+.+++++.+++-. ..|..+.|++++ ..++.. +.+-+++.+ +.+.++...-+...+
T Consensus 77 kLWDv~tGk~la~~k~~--~~Vk~~~F~~~g----n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~ski 150 (327)
T KOG0643|consen 77 KLWDVETGKQLATWKTN--SPVKRVDFSFGG----NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKI 150 (327)
T ss_pred EEEEcCCCcEEEEeecC--CeeEEEeeccCC----cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccce
Confidence 99999999999998864 578999999988 333211 255566665 445444444444555
Q ss_pred --EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459 397 --LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 397 --~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d 473 (696)
..+.+ ++.+++|..|+.+..||+..+.. +...-..|+..|..+.+|||..++++|+.|
T Consensus 151 t~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-------------------~v~s~~~h~~~Ind~q~s~d~T~FiT~s~D 211 (327)
T KOG0643|consen 151 TSALWGPLGETIIAGHEDGSISIYDARTGKE-------------------LVDSDEEHSSKINDLQFSRDRTYFITGSKD 211 (327)
T ss_pred eeeeecccCCEEEEecCCCcEEEEEcccCce-------------------eeechhhhccccccccccCCcceEEecccC
Confidence 55566 99999999999999999988765 244455788899999999999999999999
Q ss_pred ccE-EEEccCCc-eEecCCccceeeeEEEeEeeeCcEEEEEEee---------cCCCeEEEEEeeCC---CCCccceeEE
Q 005459 474 GLI-LYDIRQKK-WRVFGDITQEQKIQSKGLLWLGKIIVVCNYI---------DSSNTYELLFYPRY---HLDQSSLLCR 539 (696)
Q Consensus 474 G~i-~w~~~sg~-w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~---------~~~~~~~lr~y~~~---~l~~~~~~~~ 539 (696)
.++ +||+.+-. .|.|..+..-+ +..+.=..+.+|.++.. ...+.+|-|||..- .+ ...-.|-
T Consensus 212 ttakl~D~~tl~v~Kty~te~PvN---~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi-grvkGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTERPVN---TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI-GRVKGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeeccccc---ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh-ccccccc
Confidence 999 99998754 24443322211 11222233444433222 12344678888752 11 1122344
Q ss_pred eecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 540 KSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 540 ~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
-++.+ +++.|.|.....+..|+.++|++++.
T Consensus 288 GPINs--vAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINS--VAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcce--eEECCCCcccccCCCCceEEEEEecc
Confidence 44544 89999999999999999999998874
No 71
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.87 E-value=4.3e-20 Score=173.70 Aligned_cols=254 Identities=16% Similarity=0.169 Sum_probs=197.8
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRG 278 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg 278 (696)
.+.+|..+++.+. +..+|.++++++.|.++.+|-..+++++ .||.++|. ++++-+.+.+++|+.|.
T Consensus 5 ~l~GHERplTqiK----------yN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 5 LLQGHERPLTQIK----------YNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred ccccCccccceEE----------ecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccc
Confidence 3456777788877 4568999999999999999988887776 79999998 99999999999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEEEcc-------CCeeEEEee
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVWSVS-------GCRLMSTIR 346 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW~~~-------~~~~~~~l~ 346 (696)
++++||+.+ ++.+.+++. ..+|..+.|+++|++++...+ -+.|.++++. +..+...+.
T Consensus 75 t~kLWDv~t-Gk~la~~k~---------~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 75 TAKLWDVET-GKQLATWKT---------NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred eeEEEEcCC-CcEEEEeec---------CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 999999998 888888875 678999999999998877654 3579999986 444455665
Q ss_pred cccccceecccccCCCCCCccceecce---eeEEEcCCCce-EEEEecCCcceE--EEEec-ceeeeeccCCCCceeeee
Q 005459 347 QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR-LYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQV 419 (696)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~-l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~ 419 (696)
-+ .+.++...|+|-+ +.+++|- .+..||+.+++ ++...+.|...| ++++. ....+|+|.|.+.++||+
T Consensus 145 t~-~skit~a~Wg~l~----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 145 TP-DSKITSALWGPLG----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred CC-ccceeeeeecccC----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeec
Confidence 55 5778888999988 8888886 89999999864 455556788888 55555 778999999999999998
Q ss_pred eecC--------------------CeEEEEecCCCCcc--------ee-----EEe--ecCeeeecCCCceEEEEEcCCC
Q 005459 420 IYGE--------------------DRLLVVQSEDTDEL--------KI-----LHL--NLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 420 ~~~~--------------------~~~~~~~~~~~~~~--------~w-----~~~--~~~~~~~~~~~~I~~va~s~dG 464 (696)
.+-+ +.+.+-.|.+..+. +. +.+ .-...+.+|-+||+++||+|||
T Consensus 220 ~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG 299 (327)
T KOG0643|consen 220 RTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG 299 (327)
T ss_pred cceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence 6532 22223333333221 00 111 1123567999999999999999
Q ss_pred CEEEEEeCCccE-EEEcc
Q 005459 465 MFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 465 ~~la~ag~dG~i-~w~~~ 481 (696)
+..++||+||.+ +.-..
T Consensus 300 ksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 300 KSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cccccCCCCceEEEEEec
Confidence 999999999999 66443
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=201.16 Aligned_cols=201 Identities=13% Similarity=0.157 Sum_probs=145.2
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcC-CCcEEEEEecCCe
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP-EQQILAVGTRRGV 279 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp-~~~~la~g~~dg~ 279 (696)
+.+|...|.++.| +...++++++-|+|+++|+....+++ ..|.+-|+ |+|+| |.+++++||-||.
T Consensus 365 f~GHt~DILDlSW-----------SKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~K 433 (712)
T KOG0283|consen 365 FKGHTADILDLSW-----------SKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGK 433 (712)
T ss_pred hhccchhheeccc-----------ccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccc
Confidence 4567777888774 34567888899999999998876665 56888876 99999 7899999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s 359 (696)
||||++.+ .+... +.. -..-|++++|+|||+..+.|..+|.++++++.+.++.....-+..
T Consensus 434 vRiWsI~d-~~Vv~-W~D--------l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~--------- 494 (712)
T KOG0283|consen 434 VRLWSISD-KKVVD-WND--------LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLH--------- 494 (712)
T ss_pred eEEeecCc-CeeEe-ehh--------hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeec---------
Confidence 99999987 33332 222 246799999999999999999999999999999887654432100
Q ss_pred CCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec--c--eeeeeccCCCCceeeeeeecCCeEEEEecCCCC
Q 005459 360 PNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF--G--KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTD 435 (696)
Q Consensus 360 p~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~--~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~ 435 (696)
+ . + . ..|. +|..|.| + ..++..+.|..|+++|..+.+.
T Consensus 495 ~-~----K--------------------k-~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l----------- 536 (712)
T KOG0283|consen 495 N-K----K--------------------K-KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL----------- 536 (712)
T ss_pred c-C----c--------------------c-ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh-----------
Confidence 0 0 0 0 0122 5644444 2 2355567788888877643332
Q ss_pred cceeEEeecCeeeecC---CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 436 ELKILHLNLPVSYISQ---NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 436 ~~~w~~~~~~~~~~~~---~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...|.++ +.. ..+.|+.||++|++|++|..+ +|+...
T Consensus 537 ---------v~KfKG~~n~~SQ-~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 537 ---------VHKFKGFRNTSSQ-ISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ---------hhhhcccccCCcc-eeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 3445532 223 356899999999999999999 999854
No 73
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.3e-20 Score=176.09 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=178.6
Q ss_pred CCcEEEEeeccCCceeeeeeecc----eecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKID----KELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
....+++++.||++++||...+. +++.|..-|. +.+|+ +.+.+.+++.||+||+|+..- ...+.++.+
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r-~~Sv~Tf~g----- 145 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR-PNSVQTFNG----- 145 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC-CcceEeecC-----
Confidence 34567777889999999965432 2367888887 99999 566778889999999999887 677889999
Q ss_pred CCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEE
Q 005459 303 SMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQW 378 (696)
Q Consensus 303 ~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W 378 (696)
|..-|...+||| +++++|+++.|+++++||+...-....+..| ...+.++.|+.... ..+++|. .++.|
T Consensus 146 ---h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah-~~Eil~cdw~ky~~---~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 146 ---HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH-NSEILCCDWSKYNH---NVLATGGVDNLVRGW 218 (311)
T ss_pred ---CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec-cceeEeecccccCC---cEEEecCCCceEEEE
Confidence 999999999999 8899999999999999998543222337777 56788888876542 6677776 89999
Q ss_pred cCCCce-EEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 379 DEYGYR-LYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 379 ~~~~~~-l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
|++..+ .+..+.+|.-.| +.+++ ...++|+++|+++++|+...++. ...++..|..
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds-------------------~~e~~~~HtE 279 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS-------------------AIETVDHHTE 279 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh-------------------hhhhhhccce
Confidence 998754 455667888888 66666 66789999999999999886665 3567888999
Q ss_pred ceEEEEEcC-CCCEEEEEeCCccE-EEEc
Q 005459 454 PVQHVAASK-DGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 454 ~I~~va~s~-dG~~la~ag~dG~i-~w~~ 480 (696)
-+..+.||+ ++.++|+.|-|+++ +|+.
T Consensus 280 Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 280 FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EEeccccccccCceeeecccccceeeecc
Confidence 999999997 67899999999999 9984
No 74
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1e-20 Score=176.76 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=183.1
Q ss_pred CCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEE
Q 005459 256 SGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLT 332 (696)
Q Consensus 256 ~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~ 332 (696)
-++++. ++||+. .+.+++++.||++++||......+++.++. |...|.++.|++ +++.+.+++.|++||
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE--------H~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE--------HKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh--------hhhheEEeccccccceeEEeeccCCceE
Confidence 467777 999996 567888999999999998776678888887 999999999998 777888899999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCC 405 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~ 405 (696)
+|+..-+.-++|+.|| .+.|...+|+|..+ ..+++.+ +.++||.+...-.+....|...+++.++ -..+
T Consensus 131 LW~~~r~~Sv~Tf~gh-~~~Iy~a~~sp~~~---nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 131 LWDPNRPNSVQTFNGH-NSCIYQAAFSPHIP---NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred eecCCCCcceEeecCC-ccEEEEEecCCCCC---CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEE
Confidence 9999999999999998 88899999999863 5555554 8999998754444447788888888887 4468
Q ss_pred eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCC
Q 005459 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg 483 (696)
+|++.|+.++.||+..-.. ....+.+|.-.||.+.|||--. .||+++-|=++ +||...+
T Consensus 207 ~Tg~vd~~vr~wDir~~r~-------------------pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRT-------------------PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EecCCCceEEEEehhhccc-------------------cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999999999999877654 1346679999999999999764 78999999999 9998755
Q ss_pred ceEecCCccceeeeEEEeEeee---CcEEEEEEeecCCCeEEEEEeeC
Q 005459 484 KWRVFGDITQEQKIQSKGLLWL---GKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 484 ~w~~f~~~~~e~~~~v~~~~w~---~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
.- ..+...+..+| |.|+.|. +..+..+ +-+..+.+|..
T Consensus 268 ds-~~e~~~~HtEF-v~g~Dws~~~~~~vAs~-----gWDe~l~Vw~p 308 (311)
T KOG0277|consen 268 DS-AIETVDHHTEF-VCGLDWSLFDPGQVAST-----GWDELLYVWNP 308 (311)
T ss_pred hh-hhhhhhccceE-EeccccccccCceeeec-----ccccceeeecc
Confidence 31 11122233344 4566664 4444444 33456778753
No 75
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=7.8e-20 Score=175.75 Aligned_cols=287 Identities=14% Similarity=0.158 Sum_probs=192.7
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQ 97 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~ 97 (696)
+...-++||.||+.||++ .|++|+||+++ . . ..+-.|..+.--+++.-+.+.|+||-+-+++.. ....|++|.+.
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~-D-F-~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVR-D-F-ENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecc-h-h-hhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 345558999999999998 57899999996 3 1 112224444334678889999999999777754 45679999997
Q ss_pred ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (696)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~ 175 (696)
......+.....+ +..+++ +.. +...+ ..++..++.|+.++.|..|.+|+..|.......
T Consensus 164 K~~dG~~~~~~v~----~D~~~f--~~k-----h~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~id------- 225 (420)
T KOG2096|consen 164 KKTDGSGSHHFVH----IDNLEF--ERK-----HQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSID------- 225 (420)
T ss_pred ecccCCCCccccc----cccccc--chh-----cccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeec-------
Confidence 5443211100000 011111 111 11111 234556788999999999988766654433210
Q ss_pred CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----
Q 005459 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---- 251 (696)
Q Consensus 176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---- 251 (696)
-....+.-++++||||++++++-.-.+++|+..-.+
T Consensus 226 ----------------------------------------tnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~f 265 (420)
T KOG2096|consen 226 ----------------------------------------TNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTF 265 (420)
T ss_pred ----------------------------------------cccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcch
Confidence 000113346789999999998887789999876322
Q ss_pred -------eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC---CceeeEEeeccCCCCCCCCCCeEEEEECCCCC
Q 005459 252 -------KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES---ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (696)
Q Consensus 252 -------~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~ 320 (696)
.+.||..+|. ++|||+.+.+++.+.||++|+||++-. ++-.+.++....|....-..++ .|+.||.|+
T Consensus 266 qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~ 344 (420)
T KOG2096|consen 266 QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGD 344 (420)
T ss_pred hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCc
Confidence 1378999998 999999999999999999999998641 1111122211111111122334 899999999
Q ss_pred eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 321 ~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
.||.... .+++++..+.++..-+++..+...|++++|+|++ +++++..
T Consensus 345 ~lA~s~g-s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g----~~~atcG 392 (420)
T KOG2096|consen 345 SLAVSFG-SDLKVFASEDGKDYPELEDIHSTTISSISYSSDG----KYIATCG 392 (420)
T ss_pred EEEeecC-CceEEEEcccCccchhHHHhhcCceeeEEecCCC----cEEeeec
Confidence 9998877 6899999999888888877557789999999998 7777654
No 76
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=4.3e-19 Score=186.53 Aligned_cols=392 Identities=12% Similarity=0.098 Sum_probs=251.4
Q ss_pred cccEEEEcCCC---cEEEEEecCcEEEEEEEEecCcccc----cC----CCCCCCceeeeeeEEEeeeccccccceeEEE
Q 005459 69 ENLQAVWSPDT---KLIAVVTSSLYLHIFKVQITEKSIQ----IG----GKQPSGLFFIKISLVLNEQLPFAEKGLSVSN 137 (696)
Q Consensus 69 ~~~~v~wsPDg---~~lav~t~dg~l~l~~l~~~~~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~ 137 (696)
-+.+++|+.-+ -+||+++.|.|||||++........ .. ...+.-..+..+.+.+.....+.+++.-|.+
T Consensus 193 WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 193 WIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEE
Confidence 45667776544 4899999999999999976542110 00 0011111222233333444445577777777
Q ss_pred e--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459 138 I--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (696)
Q Consensus 138 ~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (696)
+ .+.+..|+.++.|.++.+ |..+.+...=. ....+-.|.
T Consensus 273 v~W~p~~~~LLSASaDksmii--W~pd~~tGiWv-------------------------------------~~vRlGe~g 313 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMII--WKPDENTGIWV-------------------------------------DVVRLGEVG 313 (764)
T ss_pred EEEccchhhheecccCcceEE--EecCCccceEE-------------------------------------EEEEeeccc
Confidence 6 455567999999999876 54433211000 000011111
Q ss_pred EccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459 216 LCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~ 288 (696)
.+...=..+.++|++..+++.+..|..++|-..+...| .||.+.|. ++|+|.|.+|.+.+.|.|-|||---..
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~ 393 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR 393 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc
Confidence 12211123457788888888888888888874332222 68999999 999999999999999999999875421
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC----------C-------------------
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG----------C------------------- 339 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~----------~------------------- 339 (696)
....+.+...+ -|.-..+|++|-+....+++|.+.+-+|+++... +
T Consensus 394 q~~wHEiaRPQ-----iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 394 QQEWHEIARPQ-----IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred ccceeeecccc-----cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 22234443322 2777899999998667888999989999997510 0
Q ss_pred ---------------e---eE-----------------------------EEeecccccceecccccCCCCCCccceecc
Q 005459 340 ---------------R---LM-----------------------------STIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 340 ---------------~---~~-----------------------------~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg 372 (696)
. +. +.|-|| ...|.+++.+|++ +.++|+
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~g----nliASa 543 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH-GYEVYALAISPTG----NLIASA 543 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC-ceeEEEEEecCCC----CEEeeh
Confidence 0 00 011233 2347788888887 777777
Q ss_pred e--------eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEE
Q 005459 373 T--------SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILH 441 (696)
Q Consensus 373 ~--------~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~ 441 (696)
. .+++|+..+-.....+.+|.-.| +.|++ ++.+++.|.|.+..+|....+..- ...
T Consensus 544 CKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----------e~~--- 610 (764)
T KOG1063|consen 544 CKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----------EFR--- 610 (764)
T ss_pred hhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----------hhh---
Confidence 5 67889988776667788999999 55555 999999999999999987433220 000
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEeeeC------cEEEEEE
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG------KIIVVCN 513 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~------~~lv~~~ 513 (696)
-.....|.--|..+.|+||++++|+|++|.++ +|.....+=+.... ....-.-.|+.+.|.+ ..+|+.+
T Consensus 611 ---fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavG 687 (764)
T KOG1063|consen 611 ---FACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVG 687 (764)
T ss_pred ---hccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEE
Confidence 01245788889999999999999999999999 99988774222211 1111223366666641 1233332
Q ss_pred eecCCCeEEEEEeeCC
Q 005459 514 YIDSSNTYELLFYPRY 529 (696)
Q Consensus 514 ~~~~~~~~~lr~y~~~ 529 (696)
-..++|-+|.+.
T Consensus 688 ----le~GeI~l~~~~ 699 (764)
T KOG1063|consen 688 ----LEKGEIVLWRRK 699 (764)
T ss_pred ----ecccEEEEEecc
Confidence 344788888854
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-20 Score=171.45 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=194.1
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVV 280 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v 280 (696)
..++.+|..+. +.-||++.+++++|+++++|+...+..+ .+|...+. ++.+.|...+|+|+.|..|
T Consensus 14 ~~~qgaV~avr----------yN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 14 DCAQGAVRAVR----------YNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred cccccceEEEE----------EccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 34556666654 6779999999999999999998877554 78988888 9999999999999999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccc
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~ 358 (696)
.+||+++ ++..+.+.+ |.+.|+.++|+-+...+++|+.|.++++||-... ++++.|... .+.|.++..
T Consensus 84 ~vwDV~T-Gkv~Rr~rg--------H~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea-~D~V~Si~v 153 (307)
T KOG0316|consen 84 QVWDVNT-GKVDRRFRG--------HLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEA-KDGVSSIDV 153 (307)
T ss_pred EEEEccc-Ceeeeeccc--------ccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhh-cCceeEEEe
Confidence 9999999 899999999 9999999999999999999999999999998654 456667665 566777765
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCC
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT 434 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~ 434 (696)
.. ..++.|+ +++.++++.+++..-.-+|.-.-+.|+. ++..+.++.|+++++-|-.+|+
T Consensus 154 ~~------heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk----------- 216 (307)
T KOG0316|consen 154 AE------HEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK----------- 216 (307)
T ss_pred cc------cEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhH-----------
Confidence 33 4456666 9999999999988877777655577777 8899999999999987755555
Q ss_pred CcceeEEeecCeeeecCCCc--eEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 435 DELKILHLNLPVSYISQNWP--VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 435 ~~~~w~~~~~~~~~~~~~~~--I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+...|++|... =..++++..-..+++|++||.+ +||+....
T Consensus 217 ---------lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 217 ---------LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ---------HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce
Confidence 37889998653 2346788888999999999999 99997764
No 78
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=4.3e-19 Score=194.63 Aligned_cols=240 Identities=14% Similarity=0.131 Sum_probs=172.3
Q ss_pred ccCCceeeeeeecc---eecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCc-------eeeEEeeccCCCCCC
Q 005459 238 SKKGLKLAEFIKID---KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESAS-------LIRTVSLYDWGYSMD 305 (696)
Q Consensus 238 ~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~ 305 (696)
..+.+++|+..... .+.+|.+.|. ++|+|+ +++||+|+.||+|+|||+.+... .+..+.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~g-------- 123 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKG-------- 123 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeec--------
Confidence 34567778754322 2368988887 999997 79999999999999999976322 2234555
Q ss_pred CCCCeEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 306 DTGPVSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 306 h~g~V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
|.+.|.+++|+|++.. ||+|+.|++|++||+.+++...++. + ...|.+++|+|++ ..+++++ ++++||+.
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~-~~~V~SlswspdG----~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-M-PKKLSSLKWNIKG----NLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-c-CCcEEEEEECCCC----CEEEEEecCCEEEEEECC
Confidence 9999999999999875 5799999999999999988777775 3 3579999999998 7888765 89999999
Q ss_pred CceEEEEecCCcceE-----EE--Eec-ceeeeeccCCC----CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459 382 GYRLYAIEEGSSERV-----LI--FSF-GKCCLNRGVSG----MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (696)
Q Consensus 382 ~~~l~~~~~~~~~~v-----~~--~~~-~~~~~s~~~d~----~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (696)
+++++..+.+|.+.+ +. |+. ++.+++++.|+ .+++||+.....-+.. ....
T Consensus 198 sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-----------------~~ld 260 (568)
T PTZ00420 198 KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT-----------------MSID 260 (568)
T ss_pred CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE-----------------EEec
Confidence 999998888887643 21 223 56788877764 6999998754431100 0112
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEE
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv 510 (696)
.+.+++......++|.++++|+.|+.+ +|++..+....+.. .. ..-..+++++.++..+
T Consensus 261 ~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~-~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 261 NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNE-YK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecc-cc-cCCCccceEEcccccc
Confidence 233444444556779999999999999 99998875332221 11 1112457777765543
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=168.18 Aligned_cols=256 Identities=13% Similarity=0.194 Sum_probs=181.2
Q ss_pred CceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcC-CCcEEEEEecCcEEEEEEEE
Q 005459 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSP-DTKLIAVVTSSLYLHIFKVQ 97 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsP-Dg~~lav~t~dg~l~l~~l~ 97 (696)
..+-|+++.||+.||++ .++++.+|++. +. .+ +.......| +.+..++|.| ....+|+++.|..+++||+.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e-~~----r~-~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r 95 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLE-RD----RF-RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR 95 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEec-ch----hh-hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec
Confidence 44558999999999998 57899999996 32 11 111111223 4667889987 55689999999999999998
Q ss_pred ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
.++.-... + ..+ .....+.+|++++++++.+|..|..++-. .....
T Consensus 96 ~~k~~~~i-------------~--------~~~-eni~i~wsp~g~~~~~~~kdD~it~id~r--~~~~~---------- 141 (313)
T KOG1407|consen 96 SGKCTARI-------------E--------TKG-ENINITWSPDGEYIAVGNKDDRITFIDAR--TYKIV---------- 141 (313)
T ss_pred cCcEEEEe-------------e--------ccC-cceEEEEcCCCCEEEEecCcccEEEEEec--cccee----------
Confidence 66532111 0 111 11234678899999999999888765422 11100
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ec
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---EL 254 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~ 254 (696)
.-......+.++. +..++.+++.+..-|++.+......+. +.
T Consensus 142 -------------------------~~~~~~~e~ne~~----------w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 142 -------------------------NEEQFKFEVNEIS----------WNNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred -------------------------ehhcccceeeeee----------ecCCCCEEEEecCCceEEEEeccccccccccc
Confidence 0001122244444 345666666666667777665443332 24
Q ss_pred CCC-CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 255 GSG-DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 255 ~~~-~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
.|. +.+|+.|+|+|+++|+|+.|..+.+||+++ .-+.+.+.. +.-||+.|+||.||++||+|++|.-|-|
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-LiC~R~isR--------ldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-LICERCISR--------LDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhH-hhhheeecc--------ccCceEEEEeccCcceeeccCccceEEe
Confidence 554 667899999999999999999999999998 788888988 7778999999999999999999999999
Q ss_pred EEccCCeeEEEeecccccceecccccCCC
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
=++++|..+..++- .++...++|+|..
T Consensus 258 A~vetGd~~~eI~~--~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 258 AEVETGDRVWEIPC--EGPTFTVAWHPKR 284 (313)
T ss_pred EecccCCeEEEeec--cCCceeEEecCCC
Confidence 99999988877764 3556777888874
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=1.7e-19 Score=199.30 Aligned_cols=306 Identities=16% Similarity=0.133 Sum_probs=213.8
Q ss_pred cccEEEEcCCCcEEEEEe--cCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCe
Q 005459 69 ENLQAVWSPDTKLIAVVT--SSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKH 144 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t--~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~ 144 (696)
.+.++..+|||..+|+++ .||.++||+.+.-...... .+.. ..+.......+.++|.|+ ++|+.+
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~----------~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEE----------KNEN-LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhh----------hhcc-cchhheeeccccCceeEEEECCCCCe
Confidence 467999999999999999 8999999998743211100 0000 011222245677888886 788999
Q ss_pred EEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 145 MLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
+++|++|..|.+|..+. .... +.
T Consensus 84 lAsGSDD~~v~iW~~~~--~~~~-----------------------------------~~-------------------- 106 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAE--IGSG-----------------------------------TV-------------------- 106 (942)
T ss_pred EeeccCcceEEEeeecc--cCCc-----------------------------------cc--------------------
Confidence 99999998887743332 1100 00
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
|.+.|. -..+.-|.... .+.+|..-|. +.|+|++.+||+++.|++|.+||..+ .+.++++.+
T Consensus 107 -fgs~g~-------~~~vE~wk~~~--~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~------ 169 (942)
T KOG0973|consen 107 -FGSTGG-------AKNVESWKVVS--ILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRG------ 169 (942)
T ss_pred -cccccc-------ccccceeeEEE--EEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeec------
Confidence 000010 01112233221 2357877777 99999999999999999999999998 688999999
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-----cccceecccccCCCCCCccceecce-----
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-----SLSSISSPIVKPNQDCKYEPLMSGT----- 373 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-----~~~~v~~~~~sp~~~~~~~~l~sg~----- 373 (696)
|.+.|..+.|.|-|++||+-+.|++|++|.+..-.+.+++.++ +...+.-+.||||| +++++.-
T Consensus 170 --H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG----~~las~nA~n~~ 243 (942)
T KOG0973|consen 170 --HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDG----HHLASPNAVNGG 243 (942)
T ss_pred --ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCc----CeecchhhccCC
Confidence 9999999999999999999999999999998876666666543 12346778899999 7777543
Q ss_pred --eeEEEcCCCceEEEEecCCcceE--EEEec------ce------------eeeeccCCCCceeeeeeecCCeEEEEec
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERV--LIFSF------GK------------CCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v--~~~~~------~~------------~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
++.+-.-++.+.-..+-||..++ +.|.| .+ .+++|+.|+++.+|.......
T Consensus 244 ~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP------- 316 (942)
T KOG0973|consen 244 KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP------- 316 (942)
T ss_pred cceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc-------
Confidence 44444444545445556787776 55655 22 577889999999998533221
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
+.....-.+.+|..++|||||..|.+++.||++ +..++.+.
T Consensus 317 ------------l~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 317 ------------LFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred ------------hhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 001111235679999999999999999999999 88887643
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.4e-20 Score=186.89 Aligned_cols=263 Identities=15% Similarity=0.183 Sum_probs=199.1
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+.+.++...+++++.|..|++|+....+. +.|..+.+. +.|.++++.+..++.|+.+++|+++. .+...++.+
T Consensus 181 v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~-~r~~~TLsG 259 (459)
T KOG0288|consen 181 VEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS-LRLRHTLSG 259 (459)
T ss_pred eEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc-hhhhhhhcc
Confidence 44667777899999999999999764431 234445566 99999999999999999999999998 888999999
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~ 374 (696)
|++.|+++.|.-....+++|+.|.++++||+....|..++--. +.+..+..+ ...++||- +
T Consensus 260 --------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~------~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 260 --------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS------ISDVISGHFDKK 323 (459)
T ss_pred --------cccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec------ceeeeecccccc
Confidence 9999999999998888999999999999999998877665432 122222222 24456665 8
Q ss_pred eEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecC
Q 005459 375 MMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQ 451 (696)
Q Consensus 375 ~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 451 (696)
+++||..+..+......+. .| +.+++ +..+++++.|.++.+.|+...+-+..+.. +.-..+|
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA--------------~g~k~as 388 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA--------------EGFKCAS 388 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec--------------ccccccc
Confidence 9999999998888776654 77 45556 88899999999999998776655422111 2223355
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEe
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFY 526 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y 526 (696)
+ ...+.|||||.|+|+||.||.+ +|++.++|...-......+. .+..+.|. +..++++ +++...++|
T Consensus 389 D--wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~-aI~s~~W~~sG~~Llsa-----dk~~~v~lW 458 (459)
T KOG0288|consen 389 D--WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNA-AITSLSWNPSGSGLLSA-----DKQKAVTLW 458 (459)
T ss_pred c--cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCc-ceEEEEEcCCCchhhcc-----cCCcceEec
Confidence 5 5689999999999999999999 99999998764433333332 46788886 5677776 455666666
No 82
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=197.10 Aligned_cols=263 Identities=16% Similarity=0.186 Sum_probs=209.6
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE-EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
+|..|. ...+++|+.|++|++|+..+ +..+.+ +.+ |.+.|+++++..-+..|++|+.|.++++||..+
T Consensus 212 ~~~q~~--~~~~~~~s~~~tl~~~~~~~-~~~i~~~l~G--------H~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 212 LCLQLH--DGFFKSGSDDSTLHLWDLNN-GYLILTRLVG--------HFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred hhheee--cCeEEecCCCceeEEeeccc-ceEEEeeccC--------CCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 445666 66799999999999999988 666666 888 999999999988788999999999999999999
Q ss_pred CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCc
Q 005459 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMT 414 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~ 414 (696)
+.|.+++.+| .+.+.++...+ ..+++|+ ++++|+..++.++.++.+|...|.++.. ...+++|+.|+++
T Consensus 281 g~C~~~l~gh-~stv~~~~~~~------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 281 GECTHSLQGH-TSSVRCLTIDP------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTV 353 (537)
T ss_pred CcEEEEecCC-CceEEEEEccC------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecCCEEEEEecCceE
Confidence 9999999998 77788876644 3456665 9999999999999999999999988877 8889999999999
Q ss_pred eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEecCCcc
Q 005459 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVFGDIT 492 (696)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~f~~~~ 492 (696)
++|++.+++. ..++.+|+..|+++.+.+. .++.+|+.|+++ +||+.++ +....- .
T Consensus 354 ~VW~~~~~~c--------------------l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--~ 410 (537)
T KOG0274|consen 354 KVWDPRTGKC--------------------LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL--Q 410 (537)
T ss_pred EEEEhhhcee--------------------eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh--c
Confidence 9999986554 7788899999999988776 899999999999 9999998 432211 1
Q ss_pred ceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeec-C-CccEEEEccCCEEEEEEcCceEEEEEE
Q 005459 493 QEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSL-L-AKPIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 493 ~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~-~-~~~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
+ ..-.|.++.-+++.|+.+. -+.+|++|+...... ++...- + ..+-++......++.++.|+.+.+|++
T Consensus 411 ~-h~~~v~~l~~~~~~Lvs~~-----aD~~Ik~WD~~~~~~---~~~~~~~~~~~v~~l~~~~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 411 G-HTSLVSSLLLRDNFLVSSS-----ADGTIKLWDAEEGEC---LRTLEGRHVGGVSALALGKEEILCSSDDGSVKLWDL 481 (537)
T ss_pred C-CcccccccccccceeEecc-----ccccEEEeecccCce---eeeeccCCcccEEEeecCcceEEEEecCCeeEEEec
Confidence 1 2223467888888898873 335999998753222 233222 1 223444444577888899999999987
Q ss_pred EE
Q 005459 571 KL 572 (696)
Q Consensus 571 ~~ 572 (696)
..
T Consensus 482 ~~ 483 (537)
T KOG0274|consen 482 RS 483 (537)
T ss_pred cc
Confidence 64
No 83
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=4.4e-18 Score=172.84 Aligned_cols=423 Identities=15% Similarity=0.153 Sum_probs=250.4
Q ss_pred ccccccceeeeCCCCCCCCCc--eEEEEEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCC
Q 005459 2 YMAYGWPQVIPLEQGLCPSSQ--QIIYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPD 78 (696)
Q Consensus 2 y~~~g~p~~~~~~~~~~~~~~--~~v~fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPD 78 (696)
.=.+-|||--.+.+- .++.+ ....|-|-+. ++++.+.+.++.|+.+ .+....... .-+. .+.-.+.+++|.|+
T Consensus 182 lSVWdWqk~~~~~~v-k~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~-~~~l~k~~~-~fek-~ekk~Vl~v~F~en 257 (626)
T KOG2106|consen 182 LSVWDWQKKAKLGPV-KTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR-GGSLVKRQG-IFEK-REKKFVLCVTFLEN 257 (626)
T ss_pred cchhhchhhhccCcc-eeccceEEEEEeccCCCcEEEEeCCceEEEEEcc-CCceEEEee-cccc-ccceEEEEEEEcCC
Confidence 345678886554432 12333 3356999865 7777799999999986 332211111 1011 11245789999999
Q ss_pred CcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecCCcEEEE
Q 005459 79 TKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGSLYSI 157 (696)
Q Consensus 79 g~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~i~~~ 157 (696)
|. ++++.++|.|.||+..+... ... ...+++.|.++..-+ ..|+.|.+|..|..
T Consensus 258 gd-viTgDS~G~i~Iw~~~~~~~---------------------~k~--~~aH~ggv~~L~~lr~GtllSGgKDRki~~- 312 (626)
T KOG2106|consen 258 GD-VITGDSGGNILIWSKGTNRI---------------------SKQ--VHAHDGGVFSLCMLRDGTLLSGGKDRKIIL- 312 (626)
T ss_pred CC-EEeecCCceEEEEeCCCceE---------------------EeE--eeecCCceEEEEEecCccEeecCccceEEe-
Confidence 86 47889999999999843221 111 125566776665544 45677888887755
Q ss_pred ecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee
Q 005459 158 SWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV 237 (696)
Q Consensus 158 ~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~ 237 (696)
|+..... .+....|.....+|.+.-.... +...... +..-.-.......+...-+-. ...-++..|+...+++++
T Consensus 313 -Wd~~y~k-~r~~elPe~~G~iRtv~e~~~d-i~vGTtr-N~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~g 387 (626)
T KOG2106|consen 313 -WDDNYRK-LRETELPEQFGPIRTVAEGKGD-ILVGTTR-NFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCG 387 (626)
T ss_pred -ccccccc-cccccCchhcCCeeEEecCCCc-EEEeecc-ceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeecc
Confidence 7744332 2222345555555554432221 2111100 000000011122222222222 334466789999999999
Q ss_pred ccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459 238 SKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (696)
Q Consensus 238 ~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~ 315 (696)
+|+.+++|+.... .| .-...+.|++|+|.| .+|+|...|.-.|.|.++ ..+-+++. ...++++|+|
T Consensus 388 qdk~v~lW~~~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~--~~lv~~~~--------d~~~ls~v~y 455 (626)
T KOG2106|consen 388 QDKHVRLWNDHKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET--QDLVTIHT--------DNEQLSVVRY 455 (626)
T ss_pred CcceEEEccCCce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc--ceeEEEEe--------cCCceEEEEE
Confidence 9999999994332 22 223456679999999 999999999999999876 33444555 4788999999
Q ss_pred CCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC
Q 005459 316 TPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG 391 (696)
Q Consensus 316 spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~ 391 (696)
+|||.+||.|+.|+.|.++-+.. ++......-++-+.++.+.|++|+ +++.+-+ .++.|.+.........+.
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds----~~~~~~S~d~eiLyW~~~~~~~~ts~kD 531 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS----QFLVSNSGDYEILYWKPSECKQITSVKD 531 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCC----ceEEeccCceEEEEEccccCcccceecc
Confidence 99999999999999999999853 444444443333789999999998 8887655 888996654433322111
Q ss_pred CcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC--------eeeecCCCceEEEEEc
Q 005459 392 SSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP--------VSYISQNWPVQHVAAS 461 (696)
Q Consensus 392 ~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~I~~va~s 461 (696)
-. |.-.- -...+.++.|++..-- +.....+-++..+.|.. +.+..+.| ..|.+|..-|.+++|.
T Consensus 532 -vk--W~t~~c~lGF~v~g~s~~t~i~a-~~rs~~~~~lA~gdd~g--~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl 605 (626)
T KOG2106|consen 532 -VK--WATYTCTLGFEVFGGSDGTDINA-VARSHCEKLLASGDDFG--KVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFL 605 (626)
T ss_pred -ee--eeeeEEEEEEEEecccCCchHHH-hhhhhhhhhhhccccCc--eEEEEccccCCCcccceeeccccceeEEEEEe
Confidence 00 10000 0111222333332110 00001111111111111 11111122 2678999999999999
Q ss_pred CCCCEEEEEeCCccE-EEEc
Q 005459 462 KDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 462 ~dG~~la~ag~dG~i-~w~~ 480 (696)
-+-+.+.+.|.|..+ .|++
T Consensus 606 ~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 606 CKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred eCCceEEecCCCceEEEEEe
Confidence 998888888899999 9875
No 84
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8e-18 Score=176.97 Aligned_cols=422 Identities=13% Similarity=0.140 Sum_probs=245.7
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEE
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHML 146 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~ll 146 (696)
.+++++++|.+++.||++-++|+|.||++..+-.. +..+. .+.+.+|.+++. .+.+|+
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~----------------~~vi~-----g~~drsIE~L~W~e~~RLF 84 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL----------------EPVIH-----GPEDRSIESLAWAEGGRLF 84 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCcee----------------eEEEe-----cCCCCceeeEEEccCCeEE
Confidence 56789999999999999999999999999743210 00111 122334444433 478999
Q ss_pred EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (696)
Q Consensus 147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (696)
...-+|.|.. ||-....+. .........|.+|+ .
T Consensus 85 S~g~sg~i~E--wDl~~lk~~----------------------------------~~~d~~gg~IWsia----------i 118 (691)
T KOG2048|consen 85 SSGLSGSITE--WDLHTLKQK----------------------------------YNIDSNGGAIWSIA----------I 118 (691)
T ss_pred eecCCceEEE--EecccCcee----------------------------------EEecCCCcceeEEE----------e
Confidence 9999999876 554333211 11223455687776 4
Q ss_pred EeCCcEEEEeeccCCceeeeeeecc----ee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKID----KE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~----~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
.|.+..++.++.|+.+...+....+ .. ..-....+++|+|++..||.||.||.|++||+.. +...+.....-.
T Consensus 119 ~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~-~~t~~~~~~~~d 197 (691)
T KOG2048|consen 119 NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS-GQTLHIITMQLD 197 (691)
T ss_pred CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC-CceEEEeeeccc
Confidence 5555666666666643333322211 11 1123455699999999999999999999999988 444332211001
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~ 377 (696)
+.+....--|+++.|-.|+ .||+|..-|+|+.||...+.++.++.-| ...|.+++..+++ ..+.++. ++..
T Consensus 198 ~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h-~adVl~Lav~~~~----d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 198 RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCH-DADVLALAVADNE----DRVFSAGVDPKIIQ 271 (691)
T ss_pred ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhh-hcceeEEEEcCCC----CeEEEccCCCceEE
Confidence 1111123347888887675 6889988899999999999999988887 7779999998886 5555544 5555
Q ss_pred EcCCCceE-EEEe---cCCcceEEEEec-ceeeeeccCCCCceeeeeeecC---Ce---------EEEEecCCCCccee-
Q 005459 378 WDEYGYRL-YAIE---EGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGE---DR---------LLVVQSEDTDELKI- 439 (696)
Q Consensus 378 W~~~~~~l-~~~~---~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~---~~---------~~~~~~~~~~~~~w- 439 (696)
+...+..- |... ..|...+-++.. ...+.+|+.|.++.+-....-. .+ +........-...|
T Consensus 272 ~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~ 351 (691)
T KOG2048|consen 272 YSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWK 351 (691)
T ss_pred EEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEec
Confidence 55444321 3322 245555544443 4578888888877654433210 00 00001111111223
Q ss_pred -------EEeec------C-----eeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCc-eE--ecCCccceeeeE
Q 005459 440 -------LHLNL------P-----VSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKK-WR--VFGDITQEQKIQ 498 (696)
Q Consensus 440 -------~~~~~------~-----~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~-w~--~f~~~~~e~~~~ 498 (696)
..... + .-......-|.+.|+||||+++|.+.-..+-+|.++..- -| ...+...+ ...
T Consensus 352 ~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~-~~~ 430 (691)
T KOG2048|consen 352 AHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLA-LLD 430 (691)
T ss_pred cccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhh-hcc
Confidence 11111 0 011122345999999999999999987666677766521 11 11111111 111
Q ss_pred EEeEee--eCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-------ccEEEEccCCEEEEEEcCceEEEEE
Q 005459 499 SKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-------KPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 499 v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-------~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
+..+.. .++.++.+. .+..++-.+..+ ....-+.+++.+ --+..+++|++++++++.+.|.+|+
T Consensus 431 a~~i~ftid~~k~~~~s----~~~~~le~~el~---~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~n 503 (691)
T KOG2048|consen 431 ASAISFTIDKNKLFLVS----KNIFSLEEFELE---TPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYN 503 (691)
T ss_pred ceeeEEEecCceEEEEe----cccceeEEEEec---CcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEE
Confidence 223333 355555542 233455444432 100111111111 1256778999999999999999998
Q ss_pred EE
Q 005459 570 VK 571 (696)
Q Consensus 570 ~~ 571 (696)
++
T Consensus 504 l~ 505 (691)
T KOG2048|consen 504 LE 505 (691)
T ss_pred cc
Confidence 86
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.7e-18 Score=167.45 Aligned_cols=278 Identities=15% Similarity=0.173 Sum_probs=200.1
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll 146 (696)
.+++.++.|++||..+++++.|..|+|||...+.....+..+ +. ...+.++......++
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk----------ky-----------G~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK----------KY-----------GVDLACFTHHSNTVI 72 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc----------cc-----------cccEEEEecCCceEE
Confidence 578899999999999999999999999999865532211100 00 112335555556666
Q ss_pred EEec--CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEE
Q 005459 147 LGLS--DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLF 224 (696)
Q Consensus 147 v~t~--~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 224 (696)
.++. |.+|+.++.......+ ...+|+..|.+++
T Consensus 73 ~sStk~d~tIryLsl~dNkylR------------------------------------YF~GH~~~V~sL~--------- 107 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR------------------------------------YFPGHKKRVNSLS--------- 107 (311)
T ss_pred EccCCCCCceEEEEeecCceEE------------------------------------EcCCCCceEEEEE---------
Confidence 6665 5677776655443322 2345667788776
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-CceeeEEeeccCC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWG 301 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~ 301 (696)
.+|-+..+++++.|+++++||.+..++. ......-.+||.|+|-++|+|.....|++||++.. ..+..++...+
T Consensus 108 -~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-- 184 (311)
T KOG1446|consen 108 -VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-- 184 (311)
T ss_pred -ecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--
Confidence 6777889999999999999999865442 22233345899999999999999999999999975 35555555421
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccc--eecccccCCCCCCccceecce---eeE
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSS--ISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~--v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
+.....+.|.|||||++|..+...+.+.+-|.+.|...+++.++.... --+..|.|++ +.+++|. ++.
T Consensus 185 ---~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds----~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 185 ---NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS----KFVLSGSDDGTIH 257 (311)
T ss_pred ---CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC----cEEEEecCCCcEE
Confidence 245678999999999999999999999999999999999998762221 1355789999 9999887 899
Q ss_pred EEcCCCceEEEEecC-CcceEEEEec-ceeeeeccCCCCceeeeee
Q 005459 377 QWDEYGYRLYAIEEG-SSERVLIFSF-GKCCLNRGVSGMTYARQVI 420 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~-~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~ 420 (696)
+|+.++++.+....+ +...+.++.| -+...-.+.+..+.+|...
T Consensus 258 vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 258 VWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 999999999888877 4555544444 3333334445566667643
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.4e-19 Score=180.82 Aligned_cols=277 Identities=16% Similarity=0.219 Sum_probs=190.8
Q ss_pred hhcccccEEEEcCCCcE-EEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCC
Q 005459 65 QREGENLQAVWSPDTKL-IAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNK 143 (696)
Q Consensus 65 ~~~G~~~~v~wsPDg~~-lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~ 143 (696)
+++..+.+++|||...+ +|++ +.-.+.||+..+-.....+. + ++ +...--+|..||+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~s----------------r----Fk-~~v~s~~fR~DG~ 81 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFS----------------R----FK-DVVYSVDFRSDGR 81 (487)
T ss_pred cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHH----------------h----hc-cceeEEEeecCCe
Confidence 46778899999997765 5554 45569999987543211110 1 11 1122336777898
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
.+++|...|.+++++.+. ... + ..+..+..++....
T Consensus 82 LlaaGD~sG~V~vfD~k~--r~i------------L----------------------R~~~ah~apv~~~~-------- 117 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFDMKS--RVI------------L----------------------RQLYAHQAPVHVTK-------- 117 (487)
T ss_pred EEEccCCcCcEEEecccc--HHH------------H----------------------HHHhhccCceeEEE--------
Confidence 888899999999986322 100 0 02334555666655
Q ss_pred EEEEe-CCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
|+| |++.++++++|+.++.||..+... +.+|++.|. .+++|- ..++++|+-||+||+||++..+..+.++.
T Consensus 118 --f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln- 194 (487)
T KOG0310|consen 118 --FSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN- 194 (487)
T ss_pred --ecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-
Confidence 444 445566666777888999876543 378999998 899995 55899999999999999987434444443
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc-CCeeEEEeecccccceecccccCCCCCCccceecceeeE
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMM 376 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~ 376 (696)
|..||..+.|-|.|..+|+++. ..|+|||+. |+++++....| ...|+|+++..++
T Consensus 195 --------hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H-~KtVTcL~l~s~~-------------- 250 (487)
T KOG0310|consen 195 --------HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNH-NKTVTCLRLASDS-------------- 250 (487)
T ss_pred --------CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcc-cceEEEEEeecCC--------------
Confidence 8899999999999999999998 799999998 66666666656 5667777665543
Q ss_pred EEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 377 QWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
..++|++.|+.++++++.. -++ .+. ..-.+||.
T Consensus 251 --------------------------~rLlS~sLD~~VKVfd~t~--~Kv------------v~s-------~~~~~pvL 283 (487)
T KOG0310|consen 251 --------------------------TRLLSGSLDRHVKVFDTTN--YKV------------VHS-------WKYPGPVL 283 (487)
T ss_pred --------------------------ceEeecccccceEEEEccc--eEE------------EEe-------eeccccee
Confidence 2356667777777766221 110 000 12245899
Q ss_pred EEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
++++|||++.+++|..+|.+ +=...
T Consensus 284 siavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 284 SIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eEEecCCCceEEEecccceeeeehhh
Confidence 99999999999999999999 44333
No 87
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.6e-19 Score=171.33 Aligned_cols=222 Identities=14% Similarity=0.238 Sum_probs=179.7
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCc--EEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQ--ILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~--~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
+.-+|+++++++.|.+|+++|......+ ..|.+.+. +.|.+... .|.+|+.||.|.+|++.. ..++.++++
T Consensus 49 vAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-W~~~~slK~-- 125 (362)
T KOG0294|consen 49 LAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-WELLKSLKA-- 125 (362)
T ss_pred EEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC-eEEeeeecc--
Confidence 3357999999999999999998765443 56877776 99999876 899999999999999988 788999999
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQ 377 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~ 377 (696)
|++.|+.++..|.|+.-.+-+.|+.+++||+-.++....++-. ...+.+.|+|.+ +.++-++ .+-+
T Consensus 126 ------H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~--~~at~v~w~~~G----d~F~v~~~~~i~i 193 (362)
T KOG0294|consen 126 ------HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK--NKATLVSWSPQG----DHFVVSGRNKIDI 193 (362)
T ss_pred ------cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC--CcceeeEEcCCC----CEEEEEeccEEEE
Confidence 9999999999999999999999999999999877754433321 113448899988 6554333 7888
Q ss_pred EcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCce
Q 005459 378 WDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPV 455 (696)
Q Consensus 378 W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I 455 (696)
|..+...++...... .++.+..| +..+++|..+..+.+||..... ++..+.+|...|
T Consensus 194 ~q~d~A~v~~~i~~~-~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~--------------------~~~~~~AH~~RV 252 (362)
T KOG0294|consen 194 YQLDNASVFREIENP-KRILCATFLDGSELLVGGDNEWISLKDTDSDT--------------------PLTEFLAHENRV 252 (362)
T ss_pred EecccHhHhhhhhcc-ccceeeeecCCceEEEecCCceEEEeccCCCc--------------------cceeeecchhhe
Confidence 999888877766543 45555555 7789999999999998865432 367889999999
Q ss_pred EEEEE--cCCCCEEEEEeCCccE-EEEccCC
Q 005459 456 QHVAA--SKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 456 ~~va~--s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
..+++ .|++.||+++|.||.| +||+...
T Consensus 253 K~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 253 KDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99884 5789999999999999 9998764
No 88
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=2.4e-19 Score=198.10 Aligned_cols=284 Identities=16% Similarity=0.224 Sum_probs=199.8
Q ss_pred ecCCCC-eEE-EEEcCCCcEEEEEe--cCCeEEEEEccCCC-----------ceeeEEeeccCCCCCCCCCCeEEEEECC
Q 005459 253 ELGSGD-AVC-ASIAPEQQILAVGT--RRGVVELYDLAESA-----------SLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (696)
Q Consensus 253 ~~~~~~-~v~-v~~sp~~~~la~g~--~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~h~g~V~~l~~sp 317 (696)
|.+|.+ .+. ++++|||..+|+|+ .||.+++|+.+.-. +++-+.. .|.+.|+|+.|||
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~--------~h~~sv~CVR~S~ 79 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMD--------DHDGSVNCVRFSP 79 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeec--------cccCceeEEEECC
Confidence 345553 344 99999999999999 89999999976421 1112222 3999999999999
Q ss_pred CCCeEEEEEcCCcEEEEEccC------------------CeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 318 DNSAFAVGWKSRGLTVWSVSG------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 318 dg~~lasg~~Dg~v~vW~~~~------------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
||++||+|++|+-|.+|.-.. -++.+.|++| .+.|..+.++|++ .++++++ ++.
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~----~~lvS~s~DnsVi 154 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWSPDD----SLLVSVSLDNSVI 154 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccCCCc----cEEEEecccceEE
Confidence 999999999999999998752 1367788888 7889999999998 9999988 999
Q ss_pred EEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC
Q 005459 377 QWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW 453 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 453 (696)
+|+..+++++.++.+|...| +.++| +++++|-+.|+++++|....-.-. +.+.-|..-..-.-
T Consensus 155 iwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~--------------k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 155 IWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIE--------------KSITKPFEESPLTT 220 (942)
T ss_pred EEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceee--------------EeeccchhhCCCcc
Confidence 99999999999999999999 88888 999999999999999995432211 11111211111122
Q ss_pred ceEEEEEcCCCCEEEEEeC----CccE-EEEccCCceEecCC-ccceeeeEEEeEeee-----------------CcEEE
Q 005459 454 PVQHVAASKDGMFLAVAGL----HGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWL-----------------GKIIV 510 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~----dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~-----------------~~~lv 510 (696)
-++-+.|||||+|||++-. --++ +.+. +.|+.-.+ ..|+.. |..+.++ ..+.|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR--~tWk~~~~LvGH~~p--~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIER--GTWKVDKDLVGHSAP--VEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEec--CCceeeeeeecCCCc--eEEEEeChHHhccccccCCccCCCcceEE
Confidence 4788999999999998643 2244 6655 56874221 123332 2223332 12334
Q ss_pred EEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-cc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 511 VCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-KP--IVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 511 ~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-~~--l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
+|+ .+.+..|-+|... +-. .++..+.+.. .+ +.-+++|-.|++.+.|+++.+++++-
T Consensus 297 ~Av---gSqDrSlSVW~T~-~~R-Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 297 AAV---GSQDRSLSVWNTA-LPR-PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EEE---ecCCccEEEEecC-CCC-chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 442 2567899999985 111 1222222222 22 35558899999999999999999863
No 89
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=3.3e-19 Score=180.97 Aligned_cols=276 Identities=14% Similarity=0.146 Sum_probs=212.4
Q ss_pred CCCCeEEEEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 255 GSGDAVCASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
.|.....++|||... -+|+.+ .-.+.+|+..+ .+..+++.. -...|.++.|-.||+.||+|.+.|.|+|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~-~~~~k~~sr--------Fk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVT-RSVRKTFSR--------FKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecch-hhhhhhHHh--------hccceeEEEeecCCeEEEccCCcCcEEE
Confidence 444444499999543 244444 35789999876 566666655 5667999999999999999999999999
Q ss_pred EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceeee
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCL 406 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~ 406 (696)
+|..+...+..+.+| +.++....|+|.+. ..+++|+ ..+.|++.+......+.+|.+.|-+.++ ...++
T Consensus 95 fD~k~r~iLR~~~ah-~apv~~~~f~~~d~---t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 95 FDMKSRVILRQLYAH-QAPVHVTKFSPQDN---TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred eccccHHHHHHHhhc-cCceeEEEecccCC---eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 997776677788888 88999999999872 5667776 8889999988876678899999965555 45689
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceE
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWR 486 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~ 486 (696)
||++|+++++||...... +..-..|.-||..+.+=|.|..+|+||....-+||+.+|.-.
T Consensus 171 tGsYDg~vrl~DtR~~~~--------------------~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTS--------------------RVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred ecCCCceEEEEEeccCCc--------------------eeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999999999999877654 233457888999999999999999999776669999988765
Q ss_pred ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEc--cCCEEEEEEcC
Q 005459 487 VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDV--YEDYILVTYRP 562 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~--~~~~llv~~~d 562 (696)
+..-..|.. +|++|+.. +.-|+++ +-+..+++|+.. +-.+.|....++|++.+.. +++.++++-.|
T Consensus 231 l~~~~~H~K--tVTcL~l~s~~~rLlS~-----sLD~~VKVfd~t---~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 231 LTSMFNHNK--TVTCLRLASDSTRLLSG-----SLDRHVKVFDTT---NYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred hhhhhcccc--eEEEEEeecCCceEeec-----ccccceEEEEcc---ceEEEEeeecccceeeEEecCCCceEEEeccc
Confidence 543333433 36666554 5778877 556899999753 5568899999999988774 55677778888
Q ss_pred ceEEEEEEEEec
Q 005459 563 FDVHIFHVKLFG 574 (696)
Q Consensus 563 ~~~~l~~~~~~~ 574 (696)
+-+.+-+.+.+.
T Consensus 301 Glv~~rr~~~k~ 312 (487)
T KOG0310|consen 301 GLVSIRRREVKK 312 (487)
T ss_pred ceeeeehhhccc
Confidence 877776555443
No 90
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=9.8e-20 Score=174.37 Aligned_cols=276 Identities=14% Similarity=0.219 Sum_probs=197.3
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC------C-----C------ceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE------S-----A------SLIRTVSLYDWGYSMDDTGPVSCIAW 315 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~------~-----~------~~~~~~~~~~~~~~~~h~g~V~~l~~ 315 (696)
..|..+.+ .+|||||.++|+|+.|..|++.|+.. . + ..++++.. |..+|+++.|
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD--------H~devn~l~F 180 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD--------HVDEVNDLDF 180 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh--------ccCcccceee
Confidence 45777766 89999999999999999999999872 0 0 13445554 9999999999
Q ss_pred CCCCCeEEEEEcCCcEEEEEccCC---eeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe
Q 005459 316 TPDNSAFAVGWKSRGLTVWSVSGC---RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 316 spdg~~lasg~~Dg~v~vW~~~~~---~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~ 389 (696)
.|-...|++|+.|++|+++|.... +-+..+.+ ...|.++.|+|.| +.++.|. +.+++|..+++++...
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfHPsG----efllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFHPSG----EFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc--cceeeeEeecCCC----ceEEEecCCCceeEEeccceeEeeec
Confidence 999999999999999999998643 23344443 3569999999999 8888887 8999999999999876
Q ss_pred c---CCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCC-ceEEEEEc
Q 005459 390 E---GSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNW-PVQHVAAS 461 (696)
Q Consensus 390 ~---~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~-~I~~va~s 461 (696)
. +|.+.|.++.+ ++.-++++.||.+++||-..+.. ..++. +|.+ .|.++.|+
T Consensus 255 nPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC--------------------v~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC--------------------VRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred CcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH--------------------HHHHHhhcCCceeeeEEEc
Confidence 4 46777855544 88889999999999999665543 34443 4543 69999999
Q ss_pred CCCCEEEEEeCCccE-EEEccCCceE-ecCCcc--ceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCCC---CC
Q 005459 462 KDGMFLAVAGLHGLI-LYDIRQKKWR-VFGDIT--QEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRYH---LD 532 (696)
Q Consensus 462 ~dG~~la~ag~dG~i-~w~~~sg~w~-~f~~~~--~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~~---l~ 532 (696)
.+|+|+.+.|.|.++ +|.+.++|-- .+.... ..+.+.. .-.+ ..++++.- . ..+.++.-|+..+ +.
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt-qAvFNhtEdyVl~p--D--Eas~slcsWdaRtadr~~ 389 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT-QAVFNHTEDYVLFP--D--EASNSLCSWDARTADRVA 389 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh-hhhhcCccceEEcc--c--cccCceeeccccchhhhh
Confidence 999999999999999 9999999842 232211 1111111 1222 23455443 2 2334666666531 11
Q ss_pred ccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEE
Q 005459 533 QSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 533 ~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
.-.+.|.-.. +-+.-+|.+--+++.+.|...+.|.=
T Consensus 390 l~slgHn~a~--R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 390 LLSLGHNGAV--RWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hcccCCCCCc--eEEEeCCCCCceeeecccceeeeeee
Confidence 1123333322 23666778888888888999998853
No 91
>PTZ00420 coronin; Provisional
Probab=99.83 E-value=1.8e-18 Score=189.76 Aligned_cols=224 Identities=13% Similarity=0.116 Sum_probs=147.4
Q ss_pred EEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe--------eEE
Q 005459 273 VGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR--------LMS 343 (696)
Q Consensus 273 ~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~--------~~~ 343 (696)
.|+.+|.|++|+... ...+..+.+ |.++|.+++|+|+ ++.||+|+.|++|++|++..+. .+.
T Consensus 49 gGG~~gvI~L~~~~r-~~~v~~L~g--------H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 49 GGGLIGAIRLENQMR-KPPVIKLKG--------HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred CCCceeEEEeeecCC-CceEEEEcC--------CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 367789999999876 566777887 9999999999996 8999999999999999997532 112
Q ss_pred EeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecce-eeeeccCCCCceeeeeeec
Q 005459 344 TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGK-CCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 344 ~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~-~~~s~~~d~~~~~w~~~~~ 422 (696)
.+.+| ...|.+++|+|+ +. .+++++.|+++++||+..+
T Consensus 120 ~L~gH-~~~V~sVaf~P~----------------------------------------g~~iLaSgS~DgtIrIWDl~tg 158 (568)
T PTZ00420 120 ILKGH-KKKISIIDWNPM----------------------------------------NYYIMCSSGFDSFVNIWDIENE 158 (568)
T ss_pred EeecC-CCcEEEEEECCC----------------------------------------CCeEEEEEeCCCeEEEEECCCC
Confidence 22333 223333333332 22 3467888999999998766
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEE-
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSK- 500 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~- 500 (696)
.. ...+ .|...|.+++|+|||++||+++.|+.+ +||+.+++-.. .-..|+......
T Consensus 159 ~~--------------------~~~i-~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~-tl~gH~g~~~s~~ 216 (568)
T PTZ00420 159 KR--------------------AFQI-NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS-SFHIHDGGKNTKN 216 (568)
T ss_pred cE--------------------EEEE-ecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE-EEecccCCceeEE
Confidence 53 1222 245679999999999999999999999 99999876321 111222211111
Q ss_pred ----eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC--ccEEE--Ec-cCCEEEEEEcCceEEEEEEE
Q 005459 501 ----GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA--KPIVM--DV-YEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 501 ----~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~--~~l~~--~~-~~~~llv~~~d~~~~l~~~~ 571 (696)
++...++.++++++.. ..+.+|+||+..++.. .++...+.. .++.. ++ .+..++++..|+.+++|++.
T Consensus 217 v~~~~fs~d~~~IlTtG~d~-~~~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 217 IWIDGLGGDDNYILSTGFSK-NNMREMKLWDLKNTTS--ALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred EEeeeEcCCCCEEEEEEcCC-CCccEEEEEECCCCCC--ceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 1112345677765432 3456899999864443 233333332 22222 22 35567778899999999985
No 92
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=2.5e-19 Score=181.38 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=177.6
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE--EEEcCCCcEEEEEecC
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC--ASIAPEQQILAVGTRR 277 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~--v~~sp~~~~la~g~~d 277 (696)
+...+.+|++. -++|||+.+++++.-.++.+||+..+... ......-| +++|||.++..+++.|
T Consensus 461 cl~rdnyiRSc----------kL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsd 530 (705)
T KOG0639|consen 461 CLNRDNYIRSC----------KLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSD 530 (705)
T ss_pred ccCcccceeee----------EecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccC
Confidence 33456677664 48999999999999999999999766432 12223445 8999999999999999
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccc
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPI 357 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~ 357 (696)
|.|+|||+.+ ...++.+++ |+..+.||..|+||+.|-+|+-|++||.||+..++.+..-. . .+.|.++.
T Consensus 531 GnI~vwDLhn-q~~VrqfqG--------htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F-~SQIfSLg 599 (705)
T KOG0639|consen 531 GNIAVWDLHN-QTLVRQFQG--------HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-F-SSQIFSLG 599 (705)
T ss_pred CcEEEEEccc-ceeeecccC--------CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-h-hhhheecc
Confidence 9999999998 888999999 99999999999999999999999999999998776443221 1 35588888
Q ss_pred ccCCCCCCccceecce-eeEEEcC--CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459 358 VKPNQDCKYEPLMSGT-SMMQWDE--YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 358 ~sp~~~~~~~~l~sg~-~~~~W~~--~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
.+|.+ +-++-|- ...+|-. .+.+-. .+.-|..-|+.+.| ++..++.+.|+.+..|..-.|..-
T Consensus 600 ~cP~~----dWlavGMens~vevlh~skp~ky-qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi------ 668 (705)
T KOG0639|consen 600 YCPTG----DWLAVGMENSNVEVLHTSKPEKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI------ 668 (705)
T ss_pred cCCCc----cceeeecccCcEEEEecCCccce-eecccccEEEEEEecccCceeeecCchhhhhhccCccccce------
Confidence 88988 7666554 3344432 111111 12346677766666 999999999999999987777651
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
++. ..+.+|.++.+|.|.+||++|+.|..+ +|.+
T Consensus 669 ----------Fqs-----kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 ----------FQS-----KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ----------eec-----cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 111 236689999999999999999999999 9976
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.8e-19 Score=188.02 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=188.2
Q ss_pred eCCcEEEEeeccCCceeeeeeecce---------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEe
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDK---------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVS 296 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~---------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~ 296 (696)
|.|+++++++.|+.++.|+...... ...|.+.+. ++.-.+++.|++++.|-+|++|+..... .++.++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 6788899999999999998753221 245888888 8888899999999999999999998632 5667777
Q ss_pred eccCCCCCCCCCCeEEEEE-CCCCCeEEEEEcCCcEEEEEccCC--eeE--------EEee-cccccceecccccCCCCC
Q 005459 297 LYDWGYSMDDTGPVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGC--RLM--------STIR-QISLSSISSPIVKPNQDC 364 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~-spdg~~lasg~~Dg~v~vW~~~~~--~~~--------~~l~-~~~~~~v~~~~~sp~~~~ 364 (696)
. |+.-|.|+++ -++...+|+|+-|+.|.+||+..+ +++ +.+. |+ ..+|.+++..+.+
T Consensus 115 ~--------H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSLA~N~t~-- 183 (735)
T KOG0308|consen 115 T--------HKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSLAMNQTG-- 183 (735)
T ss_pred c--------ccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeeeecCCcc--
Confidence 7 9999999999 889999999999999999999876 232 3333 33 5678888888887
Q ss_pred Cccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
..+++|+ .+++||+.+++-++.+.||.+.| +.++. |..++|++.|+++++|++.+...
T Consensus 184 --t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-------------- 247 (735)
T KOG0308|consen 184 --TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-------------- 247 (735)
T ss_pred --eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccce--------------
Confidence 7888887 78899999999999999999988 44444 99999999999999999988776
Q ss_pred eEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 439 ILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 439 w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
..+|..|...|+++..+|+-+++.+||+||.+ .=|+.+
T Consensus 248 ------l~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 248 ------LATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ------eeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 67899999999999999999999999999999 878776
No 94
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.9e-19 Score=186.03 Aligned_cols=264 Identities=17% Similarity=0.207 Sum_probs=202.7
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
+.|+ ..+.+|+|. ...|.+|+..+ +........ +...|+++.|+++|.+||+|-.+|.|.|||....+.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s-~~v~~l~~~--------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~ 251 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASS-GSVTELCSF--------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK 251 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCC-CceEEeEec--------CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc
Confidence 7788 556788876 35899999887 554544444 578899999999999999999999999999999999
Q ss_pred EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE-ecCCcceEEEE--ec-ceeeeeccCCCCc
Q 005459 342 MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI-EEGSSERVLIF--SF-GKCCLNRGVSGMT 414 (696)
Q Consensus 342 ~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~-~~~~~~~v~~~--~~-~~~~~s~~~d~~~ 414 (696)
+.++.++|...|.++++.. ..+.+|+ .+..+|....+.... ..+|...|..+ +. ++.+++|+.|+.+
T Consensus 252 ~~~~~~~h~~rvg~laW~~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~ 325 (484)
T KOG0305|consen 252 TRTLRGSHASRVGSLAWNS------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVV 325 (484)
T ss_pred cccccCCcCceeEEEeccC------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccce
Confidence 9999995588899999973 4566776 788888877665554 77899999444 44 8999999999999
Q ss_pred eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC-CCEEEEEeC--CccE-EEEccCCceEecCC
Q 005459 415 YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD-GMFLAVAGL--HGLI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 415 ~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d-G~~la~ag~--dG~i-~w~~~sg~w~~f~~ 490 (696)
.+||....+. +..+..|+..|.+++|+|- ...||+||. |+.+ +||+.+|+--. .
T Consensus 326 ~Iwd~~~~~p--------------------~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~--~ 383 (484)
T KOG0305|consen 326 FIWDGLSPEP--------------------KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID--S 383 (484)
T ss_pred EeccCCCccc--------------------cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec--c
Confidence 9999844443 6688999999999999994 558899765 8899 99999885211 1
Q ss_pred ccceeeeEEEeEeeeCcE--EEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEE
Q 005459 491 ITQEQKIQSKGLLWLGKI--IVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVH 566 (696)
Q Consensus 491 ~~~e~~~~v~~~~w~~~~--lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~ 566 (696)
-.-.-+|..|.|.++. ++++ .+ -.+.+|+||.-- ++......|+..+.. ++++|++..++++.+|.+++
T Consensus 384 --vdtgsQVcsL~Wsk~~kEi~st--hG-~s~n~i~lw~~ps~~~~~~l~gH~~RVl~--la~SPdg~~i~t~a~DETlr 456 (484)
T KOG0305|consen 384 --VDTGSQVCSLIWSKKYKELLST--HG-YSENQITLWKYPSMKLVAELLGHTSRVLY--LALSPDGETIVTGAADETLR 456 (484)
T ss_pred --cccCCceeeEEEcCCCCEEEEe--cC-CCCCcEEEEeccccceeeeecCCcceeEE--EEECCCCCEEEEecccCcEE
Confidence 1112347789998665 6665 22 122488888764 333334556665554 67789999999999999999
Q ss_pred EEEEE
Q 005459 567 IFHVK 571 (696)
Q Consensus 567 l~~~~ 571 (696)
+|++=
T Consensus 457 fw~~f 461 (484)
T KOG0305|consen 457 FWNLF 461 (484)
T ss_pred ecccc
Confidence 99863
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.4e-18 Score=186.52 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=156.8
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
+.+..+.++|.|||+.|.++.+||.+++|+...... .|+ .+......|.+++....++
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P~---------------ti~~~g~~v~~ia~~s~~f 69 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EPE---------------TIDISGELVSSIACYSNHF 69 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CCc---------------hhhccCceeEEEeecccce
Confidence 445678999999999999999999999999754311 010 0111344678888888999
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFV 225 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 225 (696)
++++.+++|.++..+....... +..-...+++ ++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~i------------------------------------L~Rftlp~r~----------~~ 103 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDTI------------------------------------LARFTLPIRD----------LA 103 (933)
T ss_pred EEeeccceEEEeeCCCCCccce------------------------------------eeeeeccceE----------EE
Confidence 9999999999987653221100 0001122444 44
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecc---eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKID---KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
++-+|+.++.++.|..+++.+..+.. .+.+|...+. +.|+|++++||+.+-||+|++|++++ +.+.+++.+.+..
T Consensus 104 v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~-~~~~~tl~~v~k~ 182 (933)
T KOG1274|consen 104 VSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD-GILSKTLTGVDKD 182 (933)
T ss_pred EecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc-chhhhhcccCCcc
Confidence 78899999999999999988776542 3478999887 99999999999999999999999998 7777777765443
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~ 342 (696)
....-...+..++|+|+|..||.-..|+.|++++..+....
T Consensus 183 n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 183 NEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred ccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 33334667888999999888998889999999998776543
No 96
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=172.93 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=193.6
Q ss_pred eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
+.....+++..|+++-+.|....+.+ .||...++ +.++|+...+++++.|-.|+||.+.. .+....+..
T Consensus 229 ~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~~~~~------ 301 (506)
T KOG0289|consen 229 PSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPTSSRP------ 301 (506)
T ss_pred CCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcccccc------
Confidence 33467888899988888887765543 79999999 99999999999999999999999987 454455555
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEc
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (696)
|.++|+.+...|.|.+|.+++.|+++..-|...+.+++..... ..-.+++.+|+||+ -.+.+|. .+++|+
T Consensus 302 --h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg----Lifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 302 --HEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG----LIFGTGTPDGVVKIWD 375 (506)
T ss_pred --ccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc----eEEeccCCCceEEEEE
Confidence 9999999999999999999999999999999999887765542 23358999999999 8888887 899999
Q ss_pred CCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 380 EYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
.....-...+.+|...|..++| |-.+++++.|+.+++||+..... ++.-....+.+|.
T Consensus 376 lks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-------------------~kt~~l~~~~~v~ 436 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-------------------FKTIQLDEKKEVN 436 (506)
T ss_pred cCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-------------------cceeeccccccce
Confidence 9998888889999999977777 77899999999999999987665 2222223445899
Q ss_pred EEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
++.|++.|+||+++|.|=.| +++-.++.|...
T Consensus 437 s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 437 SLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred eEEEcCCCCeEEeecceeEEEEEecccccceee
Confidence 99999999999999999999 999999999864
No 97
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.82 E-value=7.3e-20 Score=185.31 Aligned_cols=274 Identities=15% Similarity=0.137 Sum_probs=205.9
Q ss_pred ccccceeEEEee--e-CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCc
Q 005459 128 FAEKGLSVSNIV--S-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHK 204 (696)
Q Consensus 128 ~~~~~~~v~~~~--~-~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 204 (696)
+.++...|+++. + .+..++.++-|+.|++|..-.+... ++ ..
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~-------------lr----------------------tf 254 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC-------------LR----------------------TF 254 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce-------------eh----------------------hh
Confidence 456666777763 3 4567888888999988643321111 11 23
Q ss_pred CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-cCCC--CeEEEEEcCCC-cEEEEEecCCeE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-LGSG--DAVCASIAPEQ-QILAVGTRRGVV 280 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~--~~v~v~~sp~~-~~la~g~~dg~v 280 (696)
.+|...|.++. ++.+|+.+++++-|+.+++||.+++++. ..|. -..|+.|+||+ +.+.+|+.|+.|
T Consensus 255 ~gH~k~Vrd~~----------~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki 324 (503)
T KOG0282|consen 255 KGHRKPVRDAS----------FNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKI 324 (503)
T ss_pred hcchhhhhhhh----------ccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcE
Confidence 35566676654 7899999999999999999999999876 3333 34579999998 899999999999
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccC
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
+.||++. ++.+++... |-++|..+.|-|+|+++++.++|+++++|+....-.+..+...+..+..++..+|
T Consensus 325 ~~wDiRs-~kvvqeYd~--------hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 325 RQWDIRS-GKVVQEYDR--------HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred EEEeccc-hHHHHHHHh--------hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 9999998 787777777 9999999999999999999999999999999887776666555456678888899
Q ss_pred CCCCCccceecce---eeEEEcCCC-c--eEEEEecCCcce---E-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEE
Q 005459 361 NQDCKYEPLMSGT---SMMQWDEYG-Y--RLYAIEEGSSER---V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVV 429 (696)
Q Consensus 361 ~~~~~~~~l~sg~---~~~~W~~~~-~--~l~~~~~~~~~~---v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~ 429 (696)
++ ..++.-+ .+.++.... + .....++||... + +.|++ ++.+++|+.||.+.+||..+..
T Consensus 396 ~~----~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k------ 465 (503)
T KOG0282|consen 396 NG----KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK------ 465 (503)
T ss_pred CC----CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh------
Confidence 87 4444322 333333211 0 011123344322 2 66777 9999999999999999965544
Q ss_pred ecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEE
Q 005459 430 QSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYD 479 (696)
Q Consensus 430 ~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~ 479 (696)
+...+.+|+.++..+.|.|-. ..||++|-||.| +|+
T Consensus 466 --------------l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 --------------LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred --------------hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 367788999999999999975 479999999999 996
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=1.7e-18 Score=166.72 Aligned_cols=240 Identities=12% Similarity=0.226 Sum_probs=178.5
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCc
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~ 330 (696)
..|..++. +|++ ++++|+|+.|-+|+|||+.. ...+..+-. |+|.|+++.|.|+-. .|.+|++||.
T Consensus 40 ~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll~--------HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 40 SAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILLS--------HAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred cccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhcceec--------cccceEEEEecCCcchhheeeecCCCc
Confidence 35777766 7775 88999999999999999987 566666666 999999999999876 9999999999
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (696)
|.+|++..-.++.+++.| ...|+.++.+|.+ |.+++.+.
T Consensus 109 i~iw~~~~W~~~~slK~H-~~~Vt~lsiHPS~----------------------------------------KLALsVg~ 147 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAH-KGQVTDLSIHPSG----------------------------------------KLALSVGG 147 (362)
T ss_pred EEEEEcCCeEEeeeeccc-ccccceeEecCCC----------------------------------------ceEEEEcC
Confidence 999999999999999988 5557777776664 44567788
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCC
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGD 490 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~ 490 (696)
|+.++.|++..|.....+ -+.++. ..+.|+|.|.++++.++++.-+|.+.+- ++|..
T Consensus 148 D~~lr~WNLV~Gr~a~v~-------------------~L~~~a--t~v~w~~~Gd~F~v~~~~~i~i~q~d~A--~v~~~ 204 (362)
T KOG0294|consen 148 DQVLRTWNLVRGRVAFVL-------------------NLKNKA--TLVSWSPQGDHFVVSGRNKIDIYQLDNA--SVFRE 204 (362)
T ss_pred CceeeeehhhcCccceee-------------------ccCCcc--eeeEEcCCCCEEEEEeccEEEEEecccH--hHhhh
Confidence 899999998888763211 012222 2389999999999999998779988764 45554
Q ss_pred ccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCCC--CCccceeEEeecCCccEEEEccCCEEEEEEcCceEEE
Q 005459 491 ITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRYH--LDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHI 567 (696)
Q Consensus 491 ~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~~--l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l 567 (696)
...+ .....+.| ++..|+++ .++..+++|+.+. --..+..|...+.+-....++++.+|++++.||.|++
T Consensus 205 i~~~--~r~l~~~~l~~~~L~vG-----~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 205 IENP--KRILCATFLDGSELLVG-----GDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred hhcc--ccceeeeecCCceEEEe-----cCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 3322 22445555 57788887 3447899999872 2234566776666622233455667888999999999
Q ss_pred EEEEEecc
Q 005459 568 FHVKLFGE 575 (696)
Q Consensus 568 ~~~~~~~~ 575 (696)
|+++++..
T Consensus 278 Wd~~~~~k 285 (362)
T KOG0294|consen 278 WDIDMETK 285 (362)
T ss_pred EEcccccc
Confidence 99998643
No 99
>PTZ00421 coronin; Provisional
Probab=99.82 E-value=9.9e-19 Score=190.94 Aligned_cols=217 Identities=12% Similarity=0.142 Sum_probs=162.0
Q ss_pred CCCcccEEEEEEccCcceEEEEEe-CCcEEEEeeccCCceeeeeeecc----------eecCCCCeEE-EEEcCCC-cEE
Q 005459 205 FPISSAIIWLELCLPMRLLFVLYS-NGQLMSCSVSKKGLKLAEFIKID----------KELGSGDAVC-ASIAPEQ-QIL 271 (696)
Q Consensus 205 ~~~~~~i~~~~~~~~~~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~----------~~~~~~~~v~-v~~sp~~-~~l 271 (696)
.+|...|.++. |+| |++.+++++.|+++++|+..... .+.+|...+. ++|+|++ ++|
T Consensus 72 ~GH~~~V~~v~----------fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 72 LGQEGPIIDVA----------FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVL 141 (493)
T ss_pred eCCCCCEEEEE----------EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEE
Confidence 45667787776 566 78899999999999999976431 2367888887 9999985 799
Q ss_pred EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc
Q 005459 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS 351 (696)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~ 351 (696)
|+|+.|++|++||+.+ ++.+..+.. |.+.|.+++|+|||..|++|+.|++|++||+.+++.+.++.+|...
T Consensus 142 aSgs~DgtVrIWDl~t-g~~~~~l~~--------h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~ 212 (493)
T PTZ00421 142 ASAGADMVVNVWDVER-GKAVEVIKC--------HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA 212 (493)
T ss_pred EEEeCCCEEEEEECCC-CeEEEEEcC--------CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC
Confidence 9999999999999998 677777877 9999999999999999999999999999999999989898887444
Q ss_pred ceecccccCCCCCCccceecce-------eeEEEcCCCce-EEEEecCCc-ceE--EEEec-ceeeeecc-CCCCceeee
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYR-LYAIEEGSS-ERV--LIFSF-GKCCLNRG-VSGMTYARQ 418 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~-l~~~~~~~~-~~v--~~~~~-~~~~~s~~-~d~~~~~w~ 418 (696)
.+..+.|.|++ ..+++.. .+++||..... .+.....+. ..+ ..+++ ++.+++++ .|+.+++|+
T Consensus 213 ~~~~~~w~~~~----~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwd 288 (493)
T PTZ00421 213 KSQRCLWAKRK----DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFE 288 (493)
T ss_pred cceEEEEcCCC----CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEE
Confidence 44566777775 4554322 68999997643 333332222 223 34455 66677666 599999999
Q ss_pred eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (696)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d 463 (696)
+..+... ...-..++.|++.++|.|.
T Consensus 289 l~~~~~~-------------------~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 289 LMNERLT-------------------FCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eeCCceE-------------------EEeeccCCCCCcceEeccc
Confidence 8765431 0101134567888888884
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=2e-17 Score=174.12 Aligned_cols=451 Identities=14% Similarity=0.175 Sum_probs=267.4
Q ss_pred CcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc---EEEEEecCcEEEEEEEEecCcccccCC
Q 005459 31 NGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK---LIAVVTSSLYLHIFKVQITEKSIQIGG 107 (696)
Q Consensus 31 g~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~---~lav~t~dg~l~l~~l~~~~~~~~~~~ 107 (696)
+.++|.++...|.+||-.+. .......+ +.+++.++.|-|+++ .++++..||.|++|.+....- .
T Consensus 25 ~~~vafGa~~~Iav~dp~k~-~i~t~l~G------H~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~-~---- 92 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKI-LIVTTLDG------HVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYL-I---- 92 (764)
T ss_pred cceEEecCCceEEEeCcccc-eeEEeccC------CccceEEEEEcccccccceEEEccCCCcEEEEEEeehhe-E----
Confidence 34677778889999998533 22222222 346789999999999 899999999999999982110 0
Q ss_pred CCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459 108 KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (696)
Q Consensus 108 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~ 187 (696)
.+ ..+.++...+.|+......+.+...++.+.. |+.+...-.- +..+-|
T Consensus 93 ------~i----------~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~v--w~~~~~e~~~----------~~~~rf--- 141 (764)
T KOG1063|consen 93 ------KI----------YTIQGHCKECVCVVARSSVMTCKAADGTVSV--WDKQQDEVFL----------LAVLRF--- 141 (764)
T ss_pred ------EE----------EeecCcceeEEEEEeeeeEEEeeccCceEEE--eecCCCceee----------ehheeh---
Confidence 00 0112233344444433333333467888877 5432111000 000000
Q ss_pred CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe-CCcE-EEEeeccCCceeeeeeec-----ceecCCCCeE
Q 005459 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS-NGQL-MSCSVSKKGLKLAEFIKI-----DKELGSGDAV 260 (696)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~-dG~~-~~~~~~d~~~~~~~~~~~-----~~~~~~~~~v 260 (696)
..+ .+.. +++++.+ .+++ +++++.+..+.+...... ..+.||.+.+
T Consensus 142 ------------------~~k-~~ip--------LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWI 194 (764)
T KOG1063|consen 142 ------------------EIK-EAIP--------LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWI 194 (764)
T ss_pred ------------------hhh-hHhh--------HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhh
Confidence 000 0000 0111222 2222 222223333333322211 1237999999
Q ss_pred E-EEEcCCCc---EEEEEecCCeEEEEEccCCC---ceee--------------EEeeccC-----CCCCCCCCCeEEEE
Q 005459 261 C-ASIAPEQQ---ILAVGTRRGVVELYDLAESA---SLIR--------------TVSLYDW-----GYSMDDTGPVSCIA 314 (696)
Q Consensus 261 ~-v~~sp~~~---~la~g~~dg~v~vw~~~~~~---~~~~--------------~~~~~~~-----~~~~~h~g~V~~l~ 314 (696)
. ++|+..+. +||++++|..||+|.+.-.+ +..+ .+...++ ....+|...|.++.
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~ 274 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVW 274 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEE
Confidence 9 99988655 89999999999999986422 0000 0000011 12347999999999
Q ss_pred ECCCCCeEEEEEcCCcEEEEEccCC--eeEE--Eeeccc--ccceecccccCCCCCCccceecce---eeEEEcCCCceE
Q 005459 315 WTPDNSAFAVGWKSRGLTVWSVSGC--RLMS--TIRQIS--LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL 385 (696)
Q Consensus 315 ~spdg~~lasg~~Dg~v~vW~~~~~--~~~~--~l~~~~--~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l 385 (696)
|+|++..|.+++.|+++.+|..... --+. .+.+-+ ...+....|+|++ ..+++-+ ....|.......
T Consensus 275 W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~----~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 275 WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS----NVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC----CEEEEecccCcEEEEeccCccc
Confidence 9999999999999999999988654 2222 222221 3347788889987 4444332 556676333222
Q ss_pred ---EEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEE
Q 005459 386 ---YAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVA 459 (696)
Q Consensus 386 ---~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va 459 (696)
.....||.+.| +.+++ ++.++|.+.|.|-+++.-- |.+ ..||.+.-|+ -|...+.|++
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q------------~~wHEiaRPQ---iHGyDl~c~~ 414 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQ------------QEWHEIARPQ---IHGYDLTCLS 414 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccc------------cceeeecccc---cccccceeee
Confidence 22346888888 66667 9999999999999886543 222 1276666565 3666788888
Q ss_pred EcCCCCEEEEEeCCccE-EEEccC----------Cc--------------------eE-ecCCcc---------------
Q 005459 460 ASKDGMFLAVAGLHGLI-LYDIRQ----------KK--------------------WR-VFGDIT--------------- 492 (696)
Q Consensus 460 ~s~dG~~la~ag~dG~i-~w~~~s----------g~--------------------w~-~f~~~~--------------- 492 (696)
|-+....+++|.+.... +|+... ++ -| .|..+.
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~ 494 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLA 494 (764)
T ss_pred hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccc
Confidence 87754455555555555 777621 10 00 110000
Q ss_pred ---------------------ce------eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC
Q 005459 493 ---------------------QE------QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL 543 (696)
Q Consensus 493 ---------------------~e------~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~ 543 (696)
.| +.+.|..++-. +++++++|.......-.|++|++.+....+.+..|.+.
T Consensus 495 ~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT 574 (764)
T KOG1063|consen 495 AAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT 574 (764)
T ss_pred cCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE
Confidence 00 12345555554 77888888876667779999999843332234334344
Q ss_pred CccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 544 AKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 544 ~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
-.-|.++++|.+||.++-|...+||...
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~ 602 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQ 602 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeee
Confidence 3449999999999999999999999874
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.8e-17 Score=150.94 Aligned_cols=288 Identities=14% Similarity=0.179 Sum_probs=194.2
Q ss_pred CCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC------CCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 257 GDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG------YSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 257 ~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~------~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
..++. ++|+|.|.+.|+|+...+.|+.....-..+.+.-.....| -..-|+|.|.|.+|||+|+.||+|+.|+
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk 111 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDK 111 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCc
Confidence 56777 9999999999999999999987654311110000000111 0124899999999999999999999999
Q ss_pred cEEEEEccC--CeeE---EEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCcceEEEE-
Q 005459 330 GLTVWSVSG--CRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSERVLIF- 399 (696)
Q Consensus 330 ~v~vW~~~~--~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~v~~~- 399 (696)
+|++--... +... ..+..| ...|..++|-.+.......++++. .+.+=|-..++-+..+.+|.+.|+++
T Consensus 112 ~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 112 TIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred eEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 999975532 2211 123334 667888888766555557777775 56666777888899999999999665
Q ss_pred ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec---CCCceEEEEEcCCCCEEEEEeCCcc
Q 005459 400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS---QNWPVQHVAASKDGMFLAVAGLHGL 475 (696)
Q Consensus 400 ~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~I~~va~s~dG~~la~ag~dG~ 475 (696)
++ +-.+++++.|.++++||+.-...-- .+-..+.+ ....|.+++++|.|+.||+|-.|..
T Consensus 191 swn~~m~~sgsqdktirfwdlrv~~~v~----------------~l~~~~~~~glessavaav~vdpsgrll~sg~~dss 254 (350)
T KOG0641|consen 191 SWNGAMFASGSQDKTIRFWDLRVNSCVN----------------TLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSS 254 (350)
T ss_pred EecCcEEEccCCCceEEEEeeeccceee----------------eccCcccCCCcccceeEEEEECCCcceeeeccCCCc
Confidence 45 7789999999999999986443200 00111221 1357999999999999999999999
Q ss_pred E-EEEccCCceE-ecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC-CCCccc-eeEEeecCCccEEE
Q 005459 476 I-LYDIRQKKWR-VFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSS-LLCRKSLLAKPIVM 549 (696)
Q Consensus 476 i-~w~~~sg~w~-~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~-~~~~~~~~~~~l~~ 549 (696)
. +||++.+|-. .| +.+.-.++.+.+. -+++++|.|. -.||+-+.+ .|.... .+...+....++..
T Consensus 255 c~lydirg~r~iq~f----~phsadir~vrfsp~a~yllt~syd-----~~ikltdlqgdla~el~~~vv~ehkdk~i~~ 325 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRF----HPHSADIRCVRFSPGAHYLLTCSYD-----MKIKLTDLQGDLAHELPIMVVAEHKDKAIQC 325 (350)
T ss_pred eEEEEeeCCceeeee----CCCccceeEEEeCCCceEEEEeccc-----ceEEEeecccchhhcCceEEEEeccCceEEE
Confidence 9 9999998732 22 2222336666664 5788988553 578888876 454321 12222223333433
Q ss_pred E--ccCCEEEEEEcCceEEEEEE
Q 005459 550 D--VYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 550 ~--~~~~~llv~~~d~~~~l~~~ 570 (696)
- +.+-+++..++|.+..||.+
T Consensus 326 rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 326 RWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred EecCccceeeeccCcceEEEecc
Confidence 3 44555677888999999865
No 102
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=2.2e-18 Score=165.06 Aligned_cols=234 Identities=16% Similarity=0.294 Sum_probs=175.3
Q ss_pred CCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 257 GDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 257 ~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
++.|. ++||| ...+++.|+.||+||+|++...+........ .|.++|.+++|+-||..+++|+.|+.+++|
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~-------~~~~PvL~v~WsddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQ-------SHDGPVLDVCWSDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhh-------ccCCCeEEEEEccCCceEEeeccCCceEEE
Confidence 56676 99999 6778889999999999999874444432221 399999999999999999999999999999
Q ss_pred EccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGV 410 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~ 410 (696)
|+.+++ ...+..| ...|..+.|-+.. +++.+++|+ +++.||.+....+.+..- .+++++.+. -..++.+..
T Consensus 100 DL~S~Q-~~~v~~H-d~pvkt~~wv~~~--~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAH-DAPVKTCHWVPGM--NYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVLYPMAVVATA 174 (347)
T ss_pred EccCCC-eeeeeec-ccceeEEEEecCC--CcceeEecccccceeecccCCCCeeeeeec-cceeeehhccCceeEEEec
Confidence 999995 5566666 7789998886654 357899999 999999998888877754 568888777 444555666
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec----CCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC--
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS----QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-- 483 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg-- 483 (696)
+..+.++++..+.. .+.. -++.+||++.-+|....|.|+-.|.+ +..+..+
T Consensus 175 ~r~i~vynL~n~~t----------------------e~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 175 ERHIAVYNLENPPT----------------------EFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred CCcEEEEEcCCCcc----------------------hhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 77777776644322 2222 35679999999999999999999999 8888775
Q ss_pred c----eEecCCccce--eeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 484 K----WRVFGDITQE--QKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 484 ~----w~~f~~~~~e--~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+ .|...+...- .-+.|..++++ ...++++ +.++.+.||+.+
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTa-----GsDGtf~FWDkd 281 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTA-----GSDGTFSFWDKD 281 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecccceEEEe-----cCCceEEEecch
Confidence 1 2332222111 12457788887 4566666 455889999986
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=3.3e-18 Score=172.47 Aligned_cols=266 Identities=15% Similarity=0.203 Sum_probs=195.9
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---------------------cCCCC-eEEEEEcCCCcEEEEEecCC
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---------------------LGSGD-AVCASIAPEQQILAVGTRRG 278 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---------------------~~~~~-~v~v~~sp~~~~la~g~~dg 278 (696)
...+++++|+++.++++.++++.-|+..+++.. .+|.+ .+++++|+||++||+|+.|.
T Consensus 145 ~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 145 VTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred ceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 344668999999999999999888886654311 14544 45599999999999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
.|.||+.++ .++++.+++ |.++|.+++|--.-..|.+++.|++|++|++.....+.++-+| .+.|.++..
T Consensus 225 ~v~Iw~~~t-~ehv~~~~g--------hr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH-qd~v~~Ida 294 (479)
T KOG0299|consen 225 HVQIWDCDT-LEHVKVFKG--------HRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH-QDGVLGIDA 294 (479)
T ss_pred eEEEecCcc-cchhhcccc--------cccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC-ccceeeech
Confidence 999999998 899999999 9999999999988889999999999999999988888899898 666777654
Q ss_pred cCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEe-cC
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQ-SE 432 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~-~~ 432 (696)
..-+ ..+..|. ++++|.+. .+.-.++.++...+-+..| ...++||+.+|++.+|.+..... ++.+. .+
T Consensus 295 L~re----R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkp-lf~~~~AH 368 (479)
T KOG0299|consen 295 LSRE----RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKP-LFTSRLAH 368 (479)
T ss_pred hccc----ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCc-eeEeeccc
Confidence 4432 3333332 99999983 3333344566667756666 77899999999999999876554 22221 11
Q ss_pred CCCcceeEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE--EEeEeee--C
Q 005459 433 DTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ--SKGLLWL--G 506 (696)
Q Consensus 433 ~~~~~~w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~--v~~~~w~--~ 506 (696)
.. .|. .-..++..|.+++..|....+|+|+.+|.+ +|-+..+--. + +...+-.+. |..++|. +
T Consensus 369 gv---------~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-i-~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 369 GV---------IPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-I-NLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cc---------cCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-c-ceeeecccccEEEEEEEccCC
Confidence 00 011 112344579999999999999999999999 9999988311 1 111222222 5578875 6
Q ss_pred cEEEEEE
Q 005459 507 KIIVVCN 513 (696)
Q Consensus 507 ~~lv~~~ 513 (696)
+.+++++
T Consensus 438 k~ivagi 444 (479)
T KOG0299|consen 438 KRIVAGI 444 (479)
T ss_pred CEEEEec
Confidence 6677773
No 104
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.81 E-value=6.5e-17 Score=173.57 Aligned_cols=383 Identities=14% Similarity=0.102 Sum_probs=232.8
Q ss_pred EEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCC
Q 005459 33 LLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQP 110 (696)
Q Consensus 33 lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~ 110 (696)
-+|++ .+++|.|.+.. -...|..++.. .|.++++.|+-||+ .+|++++.|++-+||++..+......
T Consensus 216 VVaiG~~~G~ViifNlK-~dkil~sFk~d------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~---- 284 (910)
T KOG1539|consen 216 VVAIGLENGTVIIFNLK-FDKILMSFKQD------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR---- 284 (910)
T ss_pred EEEEeccCceEEEEEcc-cCcEEEEEEcc------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee----
Confidence 45555 57899999995 65666666432 38899999999998 57778888999999998544211100
Q ss_pred CCceeeeeeEEEeeeccccccceeEEEe-eeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCC
Q 005459 111 SGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSN 188 (696)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~ 188 (696)
..+.+++... ...+ .-++.+..|..++.|-.|.......-+.....++.+..-+.|...+
T Consensus 285 ------------------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 285 ------------------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred ------------------ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 1111111111 1112 2344455566666655552222111111111111111112221111
Q ss_pred C--cccccCCCccc-----------------------cC----CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc
Q 005459 189 G--LASVDTSGAFV-----------------------SD----HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK 239 (696)
Q Consensus 189 ~--l~~~~~~~~~~-----------------------~~----~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d 239 (696)
. +.+...+..++ +. ...-+.-.|..+++...- -....+++.+..++
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R-----E~~W~Nv~~~h~~~ 421 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR-----EKEWDNVITAHKGK 421 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch-----hhhhcceeEEecCc
Confidence 0 00000000000 00 000111223333222110 00112344444455
Q ss_pred CCceeeeeeecce---ec-------CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459 240 KGLKLAEFIKIDK---EL-------GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (696)
Q Consensus 240 ~~~~~~~~~~~~~---~~-------~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~ 309 (696)
.....|+...... .. ....+.++++++-|++...|+..|+|.+|++.. +-....+ +.++.|.++
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS-Gi~r~sf-----~~~~ah~~~ 495 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQS-GIHRKSF-----GDSPAHKGE 495 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEccc-Ceeeccc-----ccCccccCc
Confidence 5566677543211 11 113445599999999999999999999999987 4433333 234459999
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEE
Q 005459 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLY 386 (696)
Q Consensus 310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~ 386 (696)
|+.++...-++.+++++.||-++.||..++.+..+++-. .++..+..+... ..++.+. .+++.|..+.+..
T Consensus 496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~--~~~~~iv~hr~s----~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG--SSITGIVYHRVS----DLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC--CCcceeeeeehh----hhhhhhcCceeEEEEEchhhhhh
Confidence 999999999999999999999999999998888777643 235555555544 4444433 8889999999999
Q ss_pred EEecCCcceEEEEe--c-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459 387 AIEEGSSERVLIFS--F-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (696)
Q Consensus 387 ~~~~~~~~~v~~~~--~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d 463 (696)
..+.||.++|..+. + ++.+++++.|+++++||+.++.. .. -..-..|..++.|||+
T Consensus 570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~l--------------------ID-~~~vd~~~~sls~SPn 628 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTL--------------------ID-GLLVDSPCTSLSFSPN 628 (910)
T ss_pred HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcce--------------------ee-eEecCCcceeeEECCC
Confidence 99999999995554 4 99999999999999999887764 11 1123457899999999
Q ss_pred CCEEEEEeCCccE--EEEccC
Q 005459 464 GMFLAVAGLHGLI--LYDIRQ 482 (696)
Q Consensus 464 G~~la~ag~dG~i--~w~~~s 482 (696)
|.+||++..|+.- +|.-.+
T Consensus 629 gD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 629 GDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCEEEEEEecCceEEEEEchh
Confidence 9999999998544 776444
No 105
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.79 E-value=1.9e-15 Score=153.94 Aligned_cols=345 Identities=15% Similarity=0.130 Sum_probs=232.7
Q ss_pred ceEEEEEeC--CcEEEEEcc---CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEE
Q 005459 22 QQIIYFKVN--NGLLLIASP---CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKV 96 (696)
Q Consensus 22 ~~~v~fs~d--g~lla~~~~---~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l 96 (696)
.--|+||+- |.+|++..+ .-+.+||- |-...++..+.+. ..+..+.|.|-+..|.+....|++.+|++
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sn------e~v~~a~FHPtd~nliit~Gk~H~~Fw~~ 229 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSN------EVVFLATFHPTDPNLIITCGKGHLYFWTL 229 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceecc------ceEEEEEeccCCCcEEEEeCCceEEEEEc
Confidence 445789887 568887743 35899998 4555555444332 23467999999988888888999999998
Q ss_pred EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC-CCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (696)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~ 175 (696)
+.+...... .+.-+.....|.|+... ++.++.|-++|.|.+|+-. ......
T Consensus 230 ~~~~l~k~~-------------------~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~--~~~~~k------- 281 (626)
T KOG2106|consen 230 RGGSLVKRQ-------------------GIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG--TNRISK------- 281 (626)
T ss_pred cCCceEEEe-------------------eccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC--CceEEe-------
Confidence 765421100 00000111345555433 4678889999999885432 111100
Q ss_pred CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc----
Q 005459 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID---- 251 (696)
Q Consensus 176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~---- 251 (696)
... .|+..|.+ +....||.++- +..|..+..||..-.+
T Consensus 282 --------------------------~~~-aH~ggv~~----------L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 282 --------------------------QVH-AHDGGVFS----------LCMLRDGTLLS-GGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred --------------------------Eee-ecCCceEE----------EEEecCccEee-cCccceEEeccccccccccc
Confidence 001 33444444 33668898766 8889999999843211
Q ss_pred eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 252 ~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
+++...+.++ ++=. .+. |.+|...+.|.-=++.+ ....+..+ |....+.++-.|+...+++++.|+.
T Consensus 324 elPe~~G~iRtv~e~-~~d-i~vGTtrN~iL~Gt~~~--~f~~~v~g--------h~delwgla~hps~~q~~T~gqdk~ 391 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEG-KGD-ILVGTTRNFILQGTLEN--GFTLTVQG--------HGDELWGLATHPSKNQLLTCGQDKH 391 (626)
T ss_pred cCchhcCCeeEEecC-CCc-EEEeeccceEEEeeecC--CceEEEEe--------cccceeeEEcCCChhheeeccCcce
Confidence 1234445666 4322 233 77888888887666664 34445566 8999999999999999999999999
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-cee
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKC 404 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~ 404 (696)
+++|+ ..++..+..- ..++.++.|+|.+ .++-|. ...+-+.++..++..... ..++ +.+++ +..
T Consensus 392 v~lW~--~~k~~wt~~~--~d~~~~~~fhpsg-----~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKII--EDPAECADFHPSG-----VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred EEEcc--CCceeEEEEe--cCceeEeeccCcc-----eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCE
Confidence 99999 5566555443 3568889999986 344444 555667888777766554 5555 77777 999
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~ 479 (696)
++.++.|+.+.++.+....... ...-.-|..||..+.||+|++|+.+-+.|-.+ .|.
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~~y------------------~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGRKY------------------SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEecCCCeEEEEEECCCCcEE------------------EEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 9999999999998887766532 11112234799999999999999999999988 883
No 106
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.9e-16 Score=153.40 Aligned_cols=274 Identities=14% Similarity=0.176 Sum_probs=198.6
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec--CcEEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS--SLYLHIFKV 96 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~--dg~l~l~~l 96 (696)
+...-+.|+++|.+++++ .|++++|+|+. .+.++.... + .+||. -.++|......+.-+++ |.+||.-++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~-~g~~~~ti~----s-kkyG~-~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSL-SGKQVKTIN----S-KKYGV-DLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcC-CCceeeEee----c-ccccc-cEEEEecCCceEEEccCCCCCceEEEEe
Confidence 455568999999998887 46699999995 555444332 2 24553 46788877777777776 778999998
Q ss_pred EecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE--EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCC
Q 005459 97 QITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS--NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSN 174 (696)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~--~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~ 174 (696)
...+...+..+|. ..|. +++|-++.++.++-|.+|+.|+.........
T Consensus 88 ~dNkylRYF~GH~-----------------------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~------- 137 (311)
T KOG1446|consen 88 HDNKYLRYFPGHK-----------------------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL------- 137 (311)
T ss_pred ecCceEEEcCCCC-----------------------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-------
Confidence 7555434444443 3333 3456678899999999999854331111100
Q ss_pred CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-
Q 005459 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (696)
Q Consensus 175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~- 253 (696)
........+++.|+|-++|++.....|++.|.+.-.+-
T Consensus 138 -----------------------------------------l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 138 -----------------------------------------LNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGP 176 (311)
T ss_pred -----------------------------------------EecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCC
Confidence 00111234678899999999888878999998743210
Q ss_pred --------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCe---EEEEECCCCCeE
Q 005459 254 --------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPV---SCIAWTPDNSAF 322 (696)
Q Consensus 254 --------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V---~~l~~spdg~~l 322 (696)
..+.....+.|||||+.|..+..++.+.+-|.-+ +..+.++.. +...- .+.+|+|||+.+
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~-G~~~~tfs~--------~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD-GTVKSTFSG--------YPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC-CcEeeeEee--------ccCCCCcceeEEECCCCcEE
Confidence 1234445599999999999999999999999888 778888887 33322 577899999999
Q ss_pred EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCce
Q 005459 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYR 384 (696)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~ 384 (696)
.+|+.||+|.+|++.++..+..+++.....++++.|.|.- ..+++++ .+.+|-+...+
T Consensus 248 l~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~----~mf~sa~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY----AMFVSASSNLVFWLPDEDA 306 (311)
T ss_pred EEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce----eeeeecCceEEEEeccccc
Confidence 9999999999999999999999998546779999999976 6777776 77889876443
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=6.5e-18 Score=162.23 Aligned_cols=264 Identities=13% Similarity=0.169 Sum_probs=208.4
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCe
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGV 279 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~ 279 (696)
+.+|+..|..++ ......++.+++.|.+.++|.++.+.++ .||.+.+. +.|++.+.++++|+.|++
T Consensus 144 ~~GHkDGiW~Va----------a~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t 213 (481)
T KOG0300|consen 144 LEGHKDGIWHVA----------ADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDET 213 (481)
T ss_pred hcccccceeeeh----------hhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcc
Confidence 345566666544 3333446677788999999999999886 78999998 999999999999999999
Q ss_pred EEEEEcc------CCC---------------------------------ceeeEEeeccCCCCCCCCCCeEEEEECCCCC
Q 005459 280 VELYDLA------ESA---------------------------------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS 320 (696)
Q Consensus 280 v~vw~~~------~~~---------------------------------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~ 320 (696)
-.+|... .+. .++..+. +|.+.|.+..|-..|+
T Consensus 214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~lt--------gH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLT--------GHRAVVSACDWLAGGQ 285 (481)
T ss_pred hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeee--------ccccceEehhhhcCcc
Confidence 9999832 100 0111222 5999999999999999
Q ss_pred eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceE
Q 005459 321 AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERV 396 (696)
Q Consensus 321 ~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v 396 (696)
.+++++.|++-.+||++++.++..|.|| ....+.+.-+|.. +.+++.+ +-++||... -+-+.+++||.+.|
T Consensus 286 Q~vTaSWDRTAnlwDVEtge~v~~LtGH-d~ELtHcstHptQ----rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtV 360 (481)
T KOG0300|consen 286 QMVTASWDRTANLWDVETGEVVNILTGH-DSELTHCSTHPTQ----RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTV 360 (481)
T ss_pred eeeeeeccccceeeeeccCceeccccCc-chhccccccCCcc----eEEEEeccCceeEeccchhhcceeeeecccccce
Confidence 9999999999999999999999999999 6778888888887 7888777 889999863 35567889999999
Q ss_pred EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 397 LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 397 ~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
....| +..+++++.|.++++|++..... |..-+....|++-+++|.-+..+|.--.+.
T Consensus 361 TS~vF~~dd~vVSgSDDrTvKvWdLrNMRs--------------------plATIRtdS~~NRvavs~g~~iIAiPhDNR 420 (481)
T KOG0300|consen 361 TSVVFNTDDRVVSGSDDRTVKVWDLRNMRS--------------------PLATIRTDSPANRVAVSKGHPIIAIPHDNR 420 (481)
T ss_pred eEEEEecCCceeecCCCceEEEeeeccccC--------------------cceeeecCCccceeEeecCCceEEeccCCc
Confidence 66666 88899999999999999987766 555555677899999999999999999999
Q ss_pred cE-EEEccCCceEecCC-ccceeeeEEEeEeeeCcEEE
Q 005459 475 LI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLGKIIV 510 (696)
Q Consensus 475 ~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~~~lv 510 (696)
.+ +||++..|...+.. ..|-+.-.|.+.+|..+..+
T Consensus 421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred eEEEEecCCCccccCCcccccccceeeeeeeccccCcc
Confidence 99 99999887544331 12333334678888755433
No 108
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.79 E-value=7.5e-18 Score=171.59 Aligned_cols=286 Identities=14% Similarity=0.192 Sum_probs=200.1
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
.+|..+|. +++.|.|..+++|+-|-+|++||+..-....+.++..+ . .....|++++|||.|..|.+.+.....+
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~--P--~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ--P--CETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccC--c--ccccccceeeecCCCCeEEEEecCccee
Confidence 56788888 99999999999999999999999875222222232211 1 2455799999999999998888888999
Q ss_pred EEEccCCeeEEEee------------cccccceecccccCCCCCCccceecce---eeEEEcCCCce----EEEEecCCc
Q 005459 333 VWSVSGCRLMSTIR------------QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR----LYAIEEGSS 393 (696)
Q Consensus 333 vW~~~~~~~~~~l~------------~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~----l~~~~~~~~ 393 (696)
|.|-.|...+...+ || ...+++..|+|... +.+++.+ ++++|+....+ .+..-....
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k---~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNK---EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcc---cceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 99988876655443 44 67789999999862 4555555 99999987542 222222222
Q ss_pred ceE----EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee--ecCCC--ceEEEEEcCCC
Q 005459 394 ERV----LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNW--PVQHVAASKDG 464 (696)
Q Consensus 394 ~~v----~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~--~I~~va~s~dG 464 (696)
.+| ..|++ ++.+++++.||++++|+......+ |.-+ .+|+. .|.|++||+||
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-------------------p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-------------------PVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcccc-------------------cceEeeeccCCCCceeEEEecccc
Confidence 333 55666 889999999999999996332221 2211 36776 89999999999
Q ss_pred CEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEeecC-CCeEEEEEeeCCCCCccceeEEe
Q 005459 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYIDS-SNTYELLFYPRYHLDQSSLLCRK 540 (696)
Q Consensus 465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~~~-~~~~~lr~y~~~~l~~~~~~~~~ 540 (696)
++|++-|.|++. +||+..-+-.++.-...+..|.-+.+++.+ .+|+++..... .....|.||++..|+.- .+.
T Consensus 377 ~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v---~ki 453 (641)
T KOG0772|consen 377 NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV---YKI 453 (641)
T ss_pred chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE---EEe
Confidence 999999999999 999987665554444444555566677764 45565544332 23457999999766542 333
Q ss_pred ecCC-ccE--EEEccCCEEEEEEcCceEEEEE
Q 005459 541 SLLA-KPI--VMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 541 ~~~~-~~l--~~~~~~~~llv~~~d~~~~l~~ 569 (696)
.++. .++ +-.+.=+.+.+++.|+.+++|.
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 3333 122 2234557788899999999985
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.78 E-value=1.2e-17 Score=166.99 Aligned_cols=269 Identities=16% Similarity=0.222 Sum_probs=199.0
Q ss_pred eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.++ +...|..+.+.+|+.|.++.++|... .+.+.++++ |+-.|+++.|+|+...+++++.|..|+||++.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s-~q~l~~~~G--------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS-NQILATLKG--------HTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch-hhhhhhccC--------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 345 88888888999999999999999988 788889999 99999999999999999999999999999998
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecceeeEEE---cCCCceEEEEecCCcce--E--EEEec-ceeeeecc
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW---DEYGYRLYAIEEGSSER--V--LIFSF-GKCCLNRG 409 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W---~~~~~~l~~~~~~~~~~--v--~~~~~-~~~~~s~~ 409 (696)
.......+.-| ...|+.+..+|.+ +++++++....| +.+.+..+......... + .+|++ +-.+.+|.
T Consensus 292 ~~s~~~~~~~h-~~~V~~ls~h~tg----eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 292 LSSEPTSSRPH-EEPVTGLSLHPTG----EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred cccCccccccc-cccceeeeeccCC----cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 87766666666 7889999999999 999998855555 45555555544332233 3 66777 88888999
Q ss_pred CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
.|+.+++||+..+.. ...|-+|.+||+.++|+.+|-|||++.+||.+ +||++.-+ .|
T Consensus 367 ~d~~vkiwdlks~~~--------------------~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~ 424 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQTN--------------------VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF 424 (506)
T ss_pred CCceEEEEEcCCccc--------------------cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc
Confidence 999999999987775 56788999999999999999999999999988 99997543 34
Q ss_pred CCccceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC----CCCccceeEEeecCCccEEEEccCCEEEEEEcC
Q 005459 489 GDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY----HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRP 562 (696)
Q Consensus 489 ~~~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~----~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d 562 (696)
.....+..+.+..+++ .+.+|+.+ +.+-++.+|... +....+..|. -.+.-+.+.-...++..++.|
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~-----g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd 497 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIA-----GSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMD 497 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEee-----cceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccch
Confidence 3322222234555555 47777776 233344444421 2222222222 122235555566677777777
Q ss_pred ceEEEEEE
Q 005459 563 FDVHIFHV 570 (696)
Q Consensus 563 ~~~~l~~~ 570 (696)
...++|.+
T Consensus 498 ~~l~~~a~ 505 (506)
T KOG0289|consen 498 AILRLYAL 505 (506)
T ss_pred hheEEeec
Confidence 77777653
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=4.2e-18 Score=158.49 Aligned_cols=249 Identities=15% Similarity=0.239 Sum_probs=175.7
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKS 328 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~D 328 (696)
..|++.+. +...--|+.||+++.|++|||+.++.++ .++.++.+ |.|||..++|-. -|..||+++.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G--------h~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG--------HSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC--------CCCCeeEEeecccccCcEeeEeecC
Confidence 46888887 7777789999999999999999999865 46778888 999999999976 89999999999
Q ss_pred CcEEEEEccCCeeEE--EeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeee
Q 005459 329 RGLTVWSVSGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCL 406 (696)
Q Consensus 329 g~v~vW~~~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~ 406 (696)
|.|.||.-.+++-.. ....| ..+|++++|.|.+ +. -.++
T Consensus 80 gkVIiWke~~g~w~k~~e~~~h-~~SVNsV~waphe--------------------yg------------------l~La 120 (299)
T KOG1332|consen 80 GKVIIWKEENGRWTKAYEHAAH-SASVNSVAWAPHE--------------------YG------------------LLLA 120 (299)
T ss_pred ceEEEEecCCCchhhhhhhhhh-cccceeecccccc--------------------cc------------------eEEE
Confidence 999999988874221 22223 5667777766654 22 2345
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC---C-----------CEEEEEeC
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD---G-----------MFLAVAGL 472 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d---G-----------~~la~ag~ 472 (696)
.++.||.+.+........ |.. +.....|.--|.++++.|- | +.||+||-
T Consensus 121 casSDG~vsvl~~~~~g~--------------w~t---~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGc 183 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGG--------------WTT---SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGC 183 (299)
T ss_pred EeeCCCcEEEEEEcCCCC--------------ccc---hhhhhccccccceeeecCcCCCccccccCcccccceeeccCC
Confidence 566677776655443311 111 1223467667888888886 6 77999999
Q ss_pred CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE------EEEEEeecCCCeEEEEEeeCC-CCCc--cceeEEeec
Q 005459 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI------IVVCNYIDSSNTYELLFYPRY-HLDQ--SSLLCRKSL 542 (696)
Q Consensus 473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~------lv~~~~~~~~~~~~lr~y~~~-~l~~--~~~~~~~~~ 542 (696)
|.++ +|+..+++|++-... ..+.--|+.++|-+.+ |+.| +.+..+-+|..+ .... ..+++. +
T Consensus 184 Dn~VkiW~~~~~~w~~e~~l-~~H~dwVRDVAwaP~~gl~~s~iAS~-----SqDg~viIwt~~~e~e~wk~tll~~--f 255 (299)
T KOG1332|consen 184 DNLVKIWKFDSDSWKLERTL-EGHKDWVRDVAWAPSVGLPKSTIASC-----SQDGTVIIWTKDEEYEPWKKTLLEE--F 255 (299)
T ss_pred ccceeeeecCCcchhhhhhh-hhcchhhhhhhhccccCCCceeeEEe-----cCCCcEEEEEecCccCccccccccc--C
Confidence 9999 999999999863221 1112237888996433 3333 456788999886 2222 234444 4
Q ss_pred CCcc--EEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459 543 LAKP--IVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (696)
Q Consensus 543 ~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~~~ 574 (696)
+.++ +..+..|+.|.|.+.|+.+.+|.-..+|
T Consensus 256 ~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 256 PDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred CcceEEEEEeccccEEEEecCCcEEEEEEeCCCC
Confidence 4432 4556789999999999999999866654
No 111
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.78 E-value=1.5e-17 Score=160.62 Aligned_cols=217 Identities=16% Similarity=0.179 Sum_probs=166.1
Q ss_pred EeCCcEEEEeeccCCceeeeeeeccee-----cC----CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceee---E
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LG----SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIR---T 294 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~----~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~---~ 294 (696)
-|+-.++++++.+..|++||..+++.. -+ ...+.+++|||||..|..|. ..+||+||+..++.-.. +
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhh
Confidence 366677788888889999999887643 12 24567799999999998765 57999999954343221 1
Q ss_pred EeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+...+. +..|-+.+++||| |.+++|.|+.-..+-|+.-.++.++..+.+| .+.|+.+.|.+++ +.+.+|.
T Consensus 199 ~~~~k~----gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh-~gGvThL~~~edG----n~lfsGa 269 (406)
T KOG2919|consen 199 VTKGKF----GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH-GGGVTHLQWCEDG----NKLFSGA 269 (406)
T ss_pred hhcccc----cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc-CCCeeeEEeccCc----Ceecccc
Confidence 111011 2478899999999 6679999999899999998899899999888 7789999999999 8888887
Q ss_pred ----eeEEEcCCCce-EEEEecCCc----ceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459 374 ----SMMQWDEYGYR-LYAIEEGSS----ERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (696)
Q Consensus 374 ----~~~~W~~~~~~-l~~~~~~~~----~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (696)
.+..||++... .+..+..|. .+| +.+++ ++.+++|+.||.+++||+..-.+.
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~----------------- 332 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE----------------- 332 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-----------------
Confidence 89999997643 344444443 344 56666 889999999999999998874442
Q ss_pred ecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 443 NLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 443 ~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
+..+..+...++.+++.|-=..+|+++.
T Consensus 333 --~sv~~~~sd~vNgvslnP~mpilatssG 360 (406)
T KOG2919|consen 333 --VSVTGNYSDTVNGVSLNPIMPILATSSG 360 (406)
T ss_pred --ccccccccccccceecCcccceeeeccC
Confidence 5667778888999999999777887763
No 112
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.78 E-value=6.7e-19 Score=164.06 Aligned_cols=279 Identities=13% Similarity=0.136 Sum_probs=197.6
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCC
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRG 278 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg 278 (696)
.+.++..+|.++.|++ ++|||-++++++.|+..-+-+..++.- ..||.++|. +..+.+....|+++.|-
T Consensus 9 ~c~ghtrpvvdl~~s~-------itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSP-------ITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred EEcCCCcceeEEeccC-------CCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence 3456778899999988 789999999999999888777766532 378999999 99999999999999999
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceeccc
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPI 357 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~ 357 (696)
+-+|||.-+ +..++.+. |+--|..++|+.|.++|.+|+.++-+||+|+.... ....+.+| .
T Consensus 82 takvw~a~t-gdelhsf~---------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~gh-t------- 143 (334)
T KOG0278|consen 82 TAKVWDAVT-GDELHSFE---------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGH-T------- 143 (334)
T ss_pred hhhhhhhhh-hhhhhhhh---------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCC-C-------
Confidence 999999887 66565554 78889999999999999999999999999986542 11111111 0
Q ss_pred ccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcc
Q 005459 358 VKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDEL 437 (696)
Q Consensus 358 ~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~ 437 (696)
.|+...+|..+ .+.++|+..|+++++||..++..
T Consensus 144 -------------g~Ir~v~wc~e--------------------D~~iLSSadd~tVRLWD~rTgt~------------- 177 (334)
T KOG0278|consen 144 -------------GGIRTVLWCHE--------------------DKCILSSADDKTVRLWDHRTGTE------------- 177 (334)
T ss_pred -------------CcceeEEEecc--------------------CceEEeeccCCceEEEEeccCcE-------------
Confidence 11223333221 45677889999999999988875
Q ss_pred eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccceeeeE--EEe--EeeeCcEEEEEE
Q 005459 438 KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQKIQ--SKG--LLWLGKIIVVCN 513 (696)
Q Consensus 438 ~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~~~~--v~~--~~w~~~~lv~~~ 513 (696)
.+ -+..+.+|.++.+++||++|.++-..+.+.||..+= +-. .+.++. |.. +.=..++.|++
T Consensus 178 -------v~-sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf-----~~l-Ks~k~P~nV~SASL~P~k~~fVaG- 242 (334)
T KOG0278|consen 178 -------VQ-SLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF-----GLL-KSYKMPCNVESASLHPKKEFFVAG- 242 (334)
T ss_pred -------EE-EEecCCCCcceeeccCCCEEEEecCceeEEeccccc-----cce-eeccCccccccccccCCCceEEec-
Confidence 11 233466899999999999999998777779998762 211 112222 322 33334556655
Q ss_pred eecCCCeEEEEEeeCCCCCccceeEEeecCCcc--EEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 514 YIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKP--IVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 514 ~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~--l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.++..++-|+-. .++.--.+...-++|+ +.++|+|..-..++.|++++||.+..
T Consensus 243 ----ged~~~~kfDy~-TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 243 ----GEDFKVYKFDYN-TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ----CcceEEEEEecc-CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 444566666553 1111111222233333 56779999999999999999998753
No 113
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.77 E-value=1.7e-18 Score=172.20 Aligned_cols=261 Identities=16% Similarity=0.164 Sum_probs=200.4
Q ss_pred eeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459 138 IVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (696)
Q Consensus 138 ~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (696)
+-++.+.++.|+.|..|++|.-.++... . ...+.+..+.|++++
T Consensus 183 ~l~~sdtlatgg~Dr~Ik~W~v~~~k~~-~---------------------------------~~tLaGs~g~it~~d-- 226 (459)
T KOG0288|consen 183 FLRNSDTLATGGSDRIIKLWNVLGEKSE-L---------------------------------ISTLAGSLGNITSID-- 226 (459)
T ss_pred EccCcchhhhcchhhhhhhhhcccchhh-h---------------------------------hhhhhccCCCcceee--
Confidence 3445578888999988887544333310 0 013345566688877
Q ss_pred cCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee
Q 005459 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR 293 (696)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~ 293 (696)
+.++++.++..++|+..++|+....+. +.||.+-++ +.|......+++|+.|.+|++||+.. ..+.+
T Consensus 227 --------~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~k 297 (459)
T KOG0288|consen 227 --------FDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSK 297 (459)
T ss_pred --------ecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheec
Confidence 567888888889999999999877654 378999998 88877776699999999999999987 66666
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+.-. ...+.+|..+ +..++||-.|++|+.||..+..+..+...+| .|+++..++++ ..+.+.+
T Consensus 298 t~l~---------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g----~~lLsss 360 (459)
T KOG0288|consen 298 TVLP---------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDG----LELLSSS 360 (459)
T ss_pred cccc---------cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc--ceeeEeeccCC----eEEeeec
Confidence 5543 3457777776 6789999999999999999999888888874 69999999998 5555555
Q ss_pred ---eeEEEcCCCceEEEEecC------CcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 374 ---SMMQWDEYGYRLYAIEEG------SSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~~------~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
++.+.+..++++..++.. |+-.-.+|+| +.++++|+.|+++++|++..+.....+
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l--------------- 425 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVL--------------- 425 (459)
T ss_pred CCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEe---------------
Confidence 888899999888877653 3322388999 889999999999999999988753211
Q ss_pred cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (696)
Q Consensus 444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w 478 (696)
.....+..|.+++|+|.|.+++++++++.+ +|
T Consensus 426 ---~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 426 ---SLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ---ccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 111223369999999999999999999998 88
No 114
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=4.9e-17 Score=164.06 Aligned_cols=282 Identities=14% Similarity=0.151 Sum_probs=199.8
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCcee-eEEe--------eccCCCC-CCCCCCeEEEEECCCCCeE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLI-RTVS--------LYDWGYS-MDDTGPVSCIAWTPDNSAF 322 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-~~~~--------~~~~~~~-~~h~g~V~~l~~spdg~~l 322 (696)
..|.-.++ ++++|+.++..+++.||+|.=|++.+ +... ..+. +.....+ ..|...+.+++.||||++|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~t-gk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLT-GKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhc-CcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEE
Confidence 34655554 99999999999999999999999987 3321 1111 1111122 2689999999999999999
Q ss_pred EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEE
Q 005459 323 AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIF 399 (696)
Q Consensus 323 asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~ 399 (696)
|+|+.|..|.||+..+...++.+++| .+.|.+++|.... ..+.+++ ++++|+.+....+-++-+|++.|..+
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~~~gh-r~~V~~L~fr~gt----~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKVFKGH-RGAVSSLAFRKGT----SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred EecCCCceEEEecCcccchhhccccc-ccceeeeeeecCc----cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 99999999999999999999999998 8889999996654 4455555 89999999888888888999999888
Q ss_pred ec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459 400 SF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 400 ~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i 476 (696)
+. .+.+..++.|.++++|.+... . ...|.++.+.|.|++|-.+ ..+++|+.+|.|
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi~ee-s--------------------qlifrg~~~sidcv~~In~-~HfvsGSdnG~I 350 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKIPEE-S--------------------QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSI 350 (479)
T ss_pred chhcccceEEeccccceeEEEecccc-c--------------------eeeeeCCCCCeeeEEEecc-cceeeccCCceE
Confidence 76 556666679999999998322 2 2357778888999999665 467899999999
Q ss_pred -EEEccCCceEecCC-ccc----e-----eeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeec
Q 005459 477 -LYDIRQKKWRVFGD-ITQ----E-----QKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSL 542 (696)
Q Consensus 477 -~w~~~sg~w~~f~~-~~~----e-----~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~ 542 (696)
+|++..++ .+|.. ..| + +.+=+.+++- +.+.++.+ +.+..+|+|-.+ ++..-.++...++
T Consensus 351 aLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asG-----S~~G~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 351 ALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASG-----SWSGCVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred EEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEec-----CCCCceEEEEecCCccccceeeeccc
Confidence 99998876 23321 111 1 1112333332 34444444 566899999987 5443345555555
Q ss_pred CCc--cEEEEccCCEEEEEEcCceEEEEEE
Q 005459 543 LAK--PIVMDVYEDYILVTYRPFDVHIFHV 570 (696)
Q Consensus 543 ~~~--~l~~~~~~~~llv~~~d~~~~l~~~ 570 (696)
..- .+.++..+..++++. ...=++=++
T Consensus 425 ~GfVNsl~f~~sgk~ivagi-GkEhRlGRW 453 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGI-GKEHRLGRW 453 (479)
T ss_pred ccEEEEEEEccCCCEEEEec-cccccccee
Confidence 442 244556677777743 344444333
No 115
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.7e-17 Score=154.43 Aligned_cols=236 Identities=19% Similarity=0.184 Sum_probs=174.7
Q ss_pred CCcEEEEeeccCCceeeeeeecc------eecCCCCeEE-EEEcC--CCcEEEEEecCCeEEEEEccCCCce--eeEEee
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKID------KELGSGDAVC-ASIAP--EQQILAVGTRRGVVELYDLAESASL--IRTVSL 297 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~--~~~~~~ 297 (696)
-|+.+++++.|+++++....... .+.||.+++. ++|.+ -|.+||+++-||.|.||.-.. ++- ......
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~-g~w~k~~e~~~ 100 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN-GRWTKAYEHAA 100 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC-Cchhhhhhhhh
Confidence 48899999999999998876432 2379999999 88866 699999999999999999765 432 223333
Q ss_pred ccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCC--eeEEEeecccccceecccccCCCC----------
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC--RLMSTIRQISLSSISSPIVKPNQD---------- 363 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~--~~~~~l~~~~~~~v~~~~~sp~~~---------- 363 (696)
|.+.|++++|.|.++ .||+|+.||.|.|.+..+. -....+...|.-.|+++.+.|...
T Consensus 101 --------h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~ 172 (299)
T KOG1332|consen 101 --------HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPA 172 (299)
T ss_pred --------hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcc
Confidence 999999999999654 8899999999999987543 333344443466788888887631
Q ss_pred CCccceecce---eeEEEcCCCc--eEEEEecCCcceE--EEEec-----ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459 364 CKYEPLMSGT---SMMQWDEYGY--RLYAIEEGSSERV--LIFSF-----GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 364 ~~~~~l~sg~---~~~~W~~~~~--~l~~~~~~~~~~v--~~~~~-----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
.+-..|+||. .+++|..+.+ .+-..+.+|.+.| ++..| ...++|++.|+++.+|... .+..
T Consensus 173 ~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e~e------ 245 (299)
T KOG1332|consen 173 AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EEYE------ 245 (299)
T ss_pred cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-CccC------
Confidence 1224578877 8999988765 3444577899888 55554 4578999999999999865 2211
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc-CCceEecCC
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR-QKKWRVFGD 490 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~-sg~w~~f~~ 490 (696)
.|+ +.-+.....++..++||..|..||+++.|..+ +|.-+ .|+|+..+.
T Consensus 246 ------~wk----~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 246 ------PWK----KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred ------ccc----ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 121 11122345679999999999999999999999 99754 568987554
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.5e-16 Score=153.11 Aligned_cols=243 Identities=18% Similarity=0.235 Sum_probs=163.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
.+..+.|+.||+-|.+||+||.||.|.+||+.+ ...-+.+.+ |..+|.+++||+||+.|.+++.|..+++|
T Consensus 22 d~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-~~iar~lsa--------H~~pi~sl~WS~dgr~LltsS~D~si~lw 92 (405)
T KOG1273|consen 22 DNPLAECCQFSRWGDYLAVGCANGRVVIYDFDT-FRIARMLSA--------HVRPITSLCWSRDGRKLLTSSRDWSIKLW 92 (405)
T ss_pred cCCccceEEeccCcceeeeeccCCcEEEEEccc-cchhhhhhc--------cccceeEEEecCCCCEeeeecCCceeEEE
Confidence 344588899999999999999999999999998 666677777 99999999999999999999999999999
Q ss_pred EccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCC
Q 005459 335 SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGM 413 (696)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~ 413 (696)
|+..+.+++.++-. +.|+.+.|+|... .+.+.........+..|+. ...++.-+.|+.
T Consensus 93 Dl~~gs~l~rirf~--spv~~~q~hp~k~-------------------n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~d 151 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFD--SPVWGAQWHPRKR-------------------NKCVATIMEESPVVIDFSDPKHSVLPKDDDGD 151 (405)
T ss_pred eccCCCceeEEEcc--CccceeeeccccC-------------------CeEEEEEecCCcEEEEecCCceeeccCCCccc
Confidence 99999888888764 5677777777641 1122222222334455553 333333333332
Q ss_pred ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcc
Q 005459 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT 492 (696)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~ 492 (696)
. |..-.+..|.+.|+|+.+|...|.+ +|+..|-+...--...
T Consensus 152 l-------------------------------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit 194 (405)
T KOG1273|consen 152 L-------------------------------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT 194 (405)
T ss_pred c-------------------------------------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec
Confidence 1 1112234799999999999999999 9999987533211111
Q ss_pred ceeeeEEEe--EeeeCcEEEEEEeecCCCeEEEEEeeCCCCCcc----ceeEEe-------ecCCccEEEEccCCEEEEE
Q 005459 493 QEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQS----SLLCRK-------SLLAKPIVMDVYEDYILVT 559 (696)
Q Consensus 493 ~e~~~~v~~--~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~----~~~~~~-------~~~~~~l~~~~~~~~llv~ 559 (696)
.-+ .++. +.-.+..++.- ..+..||.|+.+.+++. .+--.+ +++-.-..++..|.|++.+
T Consensus 195 s~~--~IK~I~~s~~g~~liiN-----tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~ 267 (405)
T KOG1273|consen 195 SVQ--AIKQIIVSRKGRFLIIN-----TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAG 267 (405)
T ss_pred hhe--eeeEEEEeccCcEEEEe-----cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEec
Confidence 111 1333 33346666653 45689999998644332 111001 1222346777788998886
Q ss_pred EcCceEEEEEEEE
Q 005459 560 YRPFDVHIFHVKL 572 (696)
Q Consensus 560 ~~d~~~~l~~~~~ 572 (696)
+ ...=.||.++-
T Consensus 268 s-~~aHaLYIWE~ 279 (405)
T KOG1273|consen 268 S-ARAHALYIWEK 279 (405)
T ss_pred c-ccceeEEEEec
Confidence 6 44556777763
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=2.6e-17 Score=173.45 Aligned_cols=246 Identities=14% Similarity=0.154 Sum_probs=192.3
Q ss_pred eCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE--EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC--ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~--v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
.++-.++.++.|+++++|+-...+-+ .+|.+.+. +++-+ ++-.|.+|+.|.+|.+|.... ..++.++++
T Consensus 23 ~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~-~~P~~~Lkg-- 99 (745)
T KOG0301|consen 23 TDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ-AEPLYTLKG-- 99 (745)
T ss_pred cCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC-CCchhhhhc--
Confidence 45557788888999999986543221 33444432 44443 555689999999999999988 889999999
Q ss_pred CCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeE
Q 005459 300 WGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMM 376 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~ 376 (696)
|+..|.+++---++. |+||+.|.++++|-.. ++..++.+| +.+|+++++-|.+ .++||+ +++
T Consensus 100 ------H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH-~asVWAv~~l~e~-----~~vTgsaDKtIk 164 (745)
T KOG0301|consen 100 ------HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGH-TASVWAVASLPEN-----TYVTGSADKTIK 164 (745)
T ss_pred ------cccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCc-chheeeeeecCCC-----cEEeccCcceee
Confidence 999999999888888 9999999999999764 456678888 8899999988874 567777 899
Q ss_pred EEcCCCceEEEEecCCcceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 377 QWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
+|.. ++++.++.+|.+-|..+.. ...++|++.|+.++.|++ .|+. ...+.+|..-
T Consensus 165 lWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~--------------------l~~~~ghtn~ 221 (745)
T KOG0301|consen 165 LWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV--------------------LLEMHGHTNF 221 (745)
T ss_pred eccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce--------------------eeeeeccceE
Confidence 9985 7789999999999965555 668999999999999997 4443 5678899999
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE-----EE-eEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-----SK-GLLWLGKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-----v~-~~~w~~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
|++++...+++.++++|+|+++ +|+.. ..++.+. |. .-+|.++-++++|+ ++.+|+|.
T Consensus 222 vYsis~~~~~~~Ivs~gEDrtlriW~~~----------e~~q~I~lPttsiWsa~~L~NgDIvvg~S-----DG~VrVfT 286 (745)
T KOG0301|consen 222 VYSISMALSDGLIVSTGEDRTLRIWKKD----------ECVQVITLPTTSIWSAKVLLNGDIVVGGS-----DGRVRVFT 286 (745)
T ss_pred EEEEEecCCCCeEEEecCCceEEEeecC----------ceEEEEecCccceEEEEEeeCCCEEEecc-----CceEEEEE
Confidence 9999999999999999999999 99865 1223333 44 23444555666633 47899998
Q ss_pred CC
Q 005459 528 RY 529 (696)
Q Consensus 528 ~~ 529 (696)
.+
T Consensus 287 ~~ 288 (745)
T KOG0301|consen 287 VD 288 (745)
T ss_pred ec
Confidence 64
No 118
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.1e-15 Score=161.72 Aligned_cols=263 Identities=13% Similarity=0.137 Sum_probs=174.9
Q ss_pred ceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~ 100 (696)
-.-|.+.|+|.++.++ +++.|++|+...+ ...++++...|+- ..+..-++..+++++.++++.+|+...+.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd-------~e~P~ti~~~g~~-v~~ia~~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD-------EEEPETIDISGEL-VSSIACYSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCc-------ccCCchhhccCce-eEEEeecccceEEeeccceEEEeeCCCCC
Confidence 4457899999999888 6789999998622 1334444434432 34556788899999999999999987544
Q ss_pred cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccc
Q 005459 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAA 180 (696)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~ 180 (696)
..-. +. ++.. ...++++..+|+.++.|++|-.|.++.-+.....
T Consensus 88 ~~~i----------L~------Rftl-----p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~--------------- 131 (933)
T KOG1274|consen 88 EDTI----------LA------RFTL-----PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE--------------- 131 (933)
T ss_pred ccce----------ee------eeec-----cceEEEEecCCcEEEeecCceeEEEEeccccchh---------------
Confidence 2110 11 1111 1134567778899999999999988765543221
Q ss_pred cccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeecceecCC-CC
Q 005459 181 LSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKELGS-GD 258 (696)
Q Consensus 181 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~~~~~-~~ 258 (696)
..+.+++..|.++.|+|.++.+++.+-||++.+...+++.+. .|....+ ..... ..
T Consensus 132 ---------------------~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k-~n~~~~s~ 189 (933)
T KOG1274|consen 132 ---------------------KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDK-DNEFILSR 189 (933)
T ss_pred ---------------------eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCc-cccccccc
Confidence 134467788988886665555555555555444443333322 1111111 00111 23
Q ss_pred eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
..+ ++|+|++..+|+.+.|++|++|+... .+....++... |...+.++.|||.|++||++..||.|.|||+.
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~-we~~f~Lr~~~------~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKG-WELQFKLRDKL------SSSKFSDLQWSPNGKYIAASTLDGQILVWNVD 262 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCC-ceeheeecccc------cccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence 344 99999999999999999999999887 66666666532 44449999999999999999999999999998
Q ss_pred CCeeEEEeecccccceecccccCCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+... ... ...|.+.+|.|+.
T Consensus 263 t~~~----~~~-~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 263 THER----HEF-KRAVCCEAWKPNA 282 (933)
T ss_pred cchh----ccc-cceeEEEecCCCC
Confidence 6221 111 3457777777765
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=3.8e-17 Score=172.19 Aligned_cols=213 Identities=16% Similarity=0.259 Sum_probs=172.4
Q ss_pred eCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
.|+-.+++++.|.++.+|.......+ .+|..-|| ++...++. +++|+.|.++++|... ++...+.+
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~---~l~~~l~g------ 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG---ELVYSLQG------ 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch---hhhcccCC------
Confidence 45556777888998888887666553 79999999 88888887 9999999999999864 45556777
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcC
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDE 380 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~ 380 (696)
|+.+|++++.-|++ .++||+.|++|++|.- ++++.+|.+| ++.|..+++-|+. .++|.+ .++.|+.
T Consensus 139 --H~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gH-tD~VRgL~vl~~~-----~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 139 --HTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGH-TDCVRGLAVLDDS-----HFLSCSNDGSIRLWDL 207 (745)
T ss_pred --cchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccc-hhheeeeEEecCC-----CeEeecCCceEEEEec
Confidence 99999999999998 8899999999999974 7789999998 8899999998874 345544 8999999
Q ss_pred CCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 381 YGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
+++.+....+|..-++.++. ...++|++.|+++++|... +. -+.+++|. -.|++
T Consensus 208 -~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~--------------~q~I~lPt------tsiWs 264 (745)
T KOG0301|consen 208 -DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--EC--------------VQVITLPT------TSIWS 264 (745)
T ss_pred -cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ce--------------EEEEecCc------cceEE
Confidence 56677777899999988884 7789999999999999854 11 12333443 25888
Q ss_pred EEEcCCCCEEEEEeCCccE-EEEccCCce
Q 005459 458 VAASKDGMFLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 458 va~s~dG~~la~ag~dG~i-~w~~~sg~w 485 (696)
+.+=++|. +++||.||.+ +|.....||
T Consensus 265 a~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 265 AKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 88888886 6789999999 999876654
No 120
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=6.4e-18 Score=176.61 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=165.7
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecc-----eecCCCCeEE-EEE-cCCCcEEEEEecCCeEEEE
Q 005459 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKID-----KELGSGDAVC-ASI-APEQQILAVGTRRGVVELY 283 (696)
Q Consensus 211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~v~-v~~-sp~~~~la~g~~dg~v~vw 283 (696)
+..|+++.+.-.-++..-+|+.+++++.|.++++|+..... .+..|.+-|. +++ .++..++|+|+-|+.|.||
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence 33444444443334466789999999999999999987653 2267888886 888 8899999999999999999
Q ss_pred EccCCCc-eeeEEeeccC-CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 284 DLAESAS-LIRTVSLYDW-GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 284 ~~~~~~~-~~~~~~~~~~-~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
|++.... ++..+....- ....++..+|.+++-.+.|..+++|+..+-+++||..+++-+..|+|| +..|..+..++|
T Consensus 146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH-TdNVr~ll~~dD 224 (735)
T KOG0308|consen 146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH-TDNVRVLLVNDD 224 (735)
T ss_pred EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeecc-ccceEEEEEcCC
Confidence 9997322 3322221111 111258899999999999999999999999999999999999999998 788999999999
Q ss_pred CCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeec
Q 005459 362 QDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 362 ~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~ 422 (696)
| ..++|++ ++++|+++..+++.++..|.+.||++.. -+.+.+|+.|+.+..-++...
T Consensus 225 G----t~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 225 G----TRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred C----CeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 9 8888887 9999999999999999999999988866 566889999998877666554
No 121
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.76 E-value=2e-16 Score=159.79 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=143.1
Q ss_pred EEEEeeccCCceeeeeeecce----------ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCC-CceeeEEeec
Q 005459 232 LMSCSVSKKGLKLAEFIKIDK----------ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRTVSLY 298 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~~~----------~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~ 298 (696)
.+++++.|.++.+||+..... ..+|++.+. ++|+| +..++++.+.|+.+.|||++.. .++.+...+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a- 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA- 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-
Confidence 466677888999998753221 168999999 99999 5789999999999999999951 444555566
Q ss_pred cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecce---
Q 005459 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--- 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--- 373 (696)
|+++|+|++|+| ++..||+|+.|++|++||+..- +.+.++.+| ...|..+.|+|..+ ..++|++
T Consensus 271 -------h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H-~dev~~V~WSPh~e---tvLASSg~D~ 339 (422)
T KOG0264|consen 271 -------HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGH-EDEVFQVEWSPHNE---TVLASSGTDR 339 (422)
T ss_pred -------cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCC-CcceEEEEeCCCCC---ceeEecccCC
Confidence 999999999999 7889999999999999999763 468888888 78899999999872 3444444
Q ss_pred eeEEEcCCC--------------ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeee
Q 005459 374 SMMQWDEYG--------------YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVI 420 (696)
Q Consensus 374 ~~~~W~~~~--------------~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~ 420 (696)
.+++||+.. -+++.+..||...|..|++ .-.++|.+.|+.+++|...
T Consensus 340 rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 340 RLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 899999742 2577888899999966666 5678999999999999864
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2e-17 Score=158.87 Aligned_cols=235 Identities=10% Similarity=0.099 Sum_probs=183.9
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
+.||.+.+. ++.......+++++.|.+.++|.+++ +.++.+..+ |.|.|++++|+|.|..+++++.|++-
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~G--------H~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTG--------HTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecc--------cccceeeEEeccccceEEEccCCcch
Confidence 368999999 88888888999999999999999998 899999999 99999999999999999999999999
Q ss_pred EEEEc------cC----------------------------------CeeEEEeecccccceecccccCCCCCCccceec
Q 005459 332 TVWSV------SG----------------------------------CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 332 ~vW~~------~~----------------------------------~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
.||.. .. ...++.|.+| ...|.+..|-..+ +.+++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH-~~vV~a~dWL~gg----~Q~vT 289 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH-RAVVSACDWLAGG----QQMVT 289 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc-ccceEehhhhcCc----ceeee
Confidence 99962 10 1135667776 6777777777666 78888
Q ss_pred ce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC
Q 005459 372 GT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP 445 (696)
Q Consensus 372 g~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 445 (696)
++ +..+||.++++++..+.||+..+ .+-.+ .+.+++.+.|.+.++||+...-.. .
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~s-------------------V 350 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQS-------------------V 350 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcce-------------------e
Confidence 88 88999999999999999999988 34444 788899999999999998744332 4
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEee--eCcEEEEEEeecCCCeEE
Q 005459 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYE 522 (696)
Q Consensus 446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~ 522 (696)
..|.+|...|.++.|..|.+ +++|+.|.++ +||+...|-.+-... .+-.+..+.- .+.+|.. ..+..+
T Consensus 351 ~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIR---tdS~~NRvavs~g~~iIAi-----PhDNRq 421 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIR---TDSPANRVAVSKGHPIIAI-----PHDNRQ 421 (481)
T ss_pred eeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeee---cCCccceeEeecCCceEEe-----ccCCce
Confidence 57889999999999988765 7799999999 999987663321110 0111222222 2333333 256689
Q ss_pred EEEeeCC
Q 005459 523 LLFYPRY 529 (696)
Q Consensus 523 lr~y~~~ 529 (696)
+|+|+..
T Consensus 422 vRlfDln 428 (481)
T KOG0300|consen 422 VRLFDLN 428 (481)
T ss_pred EEEEecC
Confidence 9999864
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=1.4e-17 Score=177.39 Aligned_cols=182 Identities=16% Similarity=0.301 Sum_probs=140.7
Q ss_pred CCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
.-.+++++++|++++.||....+.. .+..++++ |.|+| .+..+|++..+|.+++||++...+....+..
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A------ 218 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA------ 218 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc------
Confidence 3456778888999999998754322 45677888 99999 5889999999999999999987777777777
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce-----eeE
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMM 376 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----~~~ 376 (696)
|.|+|.|+.|+|++.+||+|++|+.|+||++.+.+. +.++.. ..+|..++|.|.-. ..|++.+ .+.
T Consensus 219 --H~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--iapv~rVkWRP~~~---~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 219 --HNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--IAPVGRVKWRPARS---YHLATCSMVVDTSVH 291 (839)
T ss_pred --ccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--cceeeeeeeccCcc---chhhhhhccccceEE
Confidence 999999999999999999999999999999987653 344433 46789999999862 3344443 899
Q ss_pred EEcCC-CceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecC
Q 005459 377 QWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGE 423 (696)
Q Consensus 377 ~W~~~-~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~ 423 (696)
+||+. .|-...++..|.+-+..+.+ ...+.+++.|+++....+..+.
T Consensus 292 VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 292 VWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred EEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99986 45667777788877743333 4567789999988665554443
No 124
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=1.3e-17 Score=163.32 Aligned_cols=270 Identities=16% Similarity=0.171 Sum_probs=182.5
Q ss_pred cccEEEEcCCC-cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEE
Q 005459 69 ENLQAVWSPDT-KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (696)
Q Consensus 69 ~~~~v~wsPDg-~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv 147 (696)
.+.+++=.|.. +.+|+++.||.|+|||+..... ...+..+.+.|..++-+.+.++.
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----------------------~~~f~AH~G~V~Gi~v~~~~~~t 124 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----------------------IRTFKAHEGLVRGICVTQTSFFT 124 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhh-----------------------hheeecccCceeeEEecccceEE
Confidence 45567777776 7899999999999999974322 12245666777777777889999
Q ss_pred EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEE
Q 005459 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (696)
Q Consensus 148 ~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s 227 (696)
+++|.++..|..++.....+ ..++.+..+.+..
T Consensus 125 vgdDKtvK~wk~~~~p~~ti--------------------------------------lg~s~~~gIdh~~--------- 157 (433)
T KOG0268|consen 125 VGDDKTVKQWKIDGPPLHTI--------------------------------------LGKSVYLGIDHHR--------- 157 (433)
T ss_pred ecCCcceeeeeccCCcceee--------------------------------------ecccccccccccc---------
Confidence 99999999866554211100 0122233333222
Q ss_pred eCCcEEEEeeccCCceeeeeeeccee----cCCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
.+..+++++. .+.+||......+ -+-....++.|||- -..||++..|+.|.|||++. ..+++.+..
T Consensus 158 -~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~----- 228 (433)
T KOG0268|consen 158 -KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVIL----- 228 (433)
T ss_pred -ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEeccc-CCccceeee-----
Confidence 2233443333 3668887533222 23344456999995 67888888999999999998 677665554
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecceeeEEEcCC
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY 381 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~ 381 (696)
+-.-+.|+|+|.+..+.+|.+|..+..+|+..- +.+...++| .+.|..+.|+|.
T Consensus 229 ----~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh-vsAV~dVdfspt-------------------- 283 (433)
T KOG0268|consen 229 ----TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH-VSAVMDVDFSPT-------------------- 283 (433)
T ss_pred ----eccccceecCccccceeeccccccceehhhhhhcccchhhccc-ceeEEEeccCCC--------------------
Confidence 344678999999999999999999999997542 223333444 344555555554
Q ss_pred CceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-cCCCceEEEEE
Q 005459 382 GYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-SQNWPVQHVAA 460 (696)
Q Consensus 382 ~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~I~~va~ 460 (696)
|+.++|||+|.+++++.+..+..| ..|. ..--.|.++.|
T Consensus 284 --------------------G~EfvsgsyDksIRIf~~~~~~SR--------------------diYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 284 --------------------GQEFVSGSYDKSIRIFPVNHGHSR--------------------DIYHTKRMQHVFCVKY 323 (433)
T ss_pred --------------------cchhccccccceEEEeecCCCcch--------------------hhhhHhhhheeeEEEE
Confidence 455677888888888887766653 1121 11124899999
Q ss_pred cCCCCEEEEEeCCccE-EEEccC
Q 005459 461 SKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 461 s~dG~~la~ag~dG~i-~w~~~s 482 (696)
|.|.+|+.+|+.||.+ +|....
T Consensus 324 S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 324 SMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred eccccEEEecCCCcceeeeecch
Confidence 9999999999999999 998654
No 125
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.74 E-value=2.4e-17 Score=161.42 Aligned_cols=250 Identities=16% Similarity=0.159 Sum_probs=183.1
Q ss_pred cCCCCeEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 254 LGSGDAVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
.||.+.|. ++=+|.. ..+|+|+.||.|++||+.. ..++.++.. |.|.|..|+++. ..+++++.|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~A--------H~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKA--------HEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-hhhhheeec--------ccCceeeEEecc--cceEEecCCcce
Confidence 57888887 8999987 8999999999999999998 788999999 999999999987 788999999999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCCcceEEE--Eec--ceeee
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLI--FSF--GKCCL 406 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~--~~~--~~~~~ 406 (696)
+.|.+.+. ..+++.+. +.+..+.-+..+ ..++|++ .+-+||......+..+.-..+.|.. |++ ...++
T Consensus 132 K~wk~~~~-p~~tilg~--s~~~gIdh~~~~----~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILGK--SVYLGIDHHRKN----SVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILA 204 (433)
T ss_pred eeeeccCC-cceeeecc--cccccccccccc----ccccccCceeeecccccCCccceeecCCCceeEEecCCCcchhee
Confidence 99998875 56666542 333333322222 5566666 8889999877777666555666644 444 44567
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCccee---------------------EEee-cCeeeecCCCceEEEEEcCCC
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKI---------------------LHLN-LPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w---------------------~~~~-~~~~~~~~~~~I~~va~s~dG 464 (696)
+++.|+++.++|+.++..-.-+..+--+..+.| +.++ ....|.+|...|.+++|||.|
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG 284 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG 284 (433)
T ss_pred eeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCc
Confidence 777999999999988764332322222222222 1111 233677899999999999999
Q ss_pred CEEEEEeCCccE-EEEccCCceEecCCccceeeeE-EEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 465 MFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 465 ~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+-+++||-|.+| +|.++.+.-+ +.-+...++ |.++.|. ..+++.+ +++..+|+|...
T Consensus 285 ~EfvsgsyDksIRIf~~~~~~SR---diYhtkRMq~V~~Vk~S~Dskyi~SG-----Sdd~nvRlWka~ 345 (433)
T KOG0268|consen 285 QEFVSGSYDKSIRIFPVNHGHSR---DIYHTKRMQHVFCVKYSMDSKYIISG-----SDDGNVRLWKAK 345 (433)
T ss_pred chhccccccceEEEeecCCCcch---hhhhHhhhheeeEEEEeccccEEEec-----CCCcceeeeecc
Confidence 999999999999 9999877532 222333344 7788896 4577776 667889999763
No 126
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.74 E-value=2.5e-17 Score=167.07 Aligned_cols=268 Identities=13% Similarity=0.116 Sum_probs=196.8
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCcee--eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKV--RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~--~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
.+-.+.+|...+.+.+++.+.|+|||+.+++. ++..+ ..+.....+..+...|||+.|+++....+|-|||+..
T Consensus 421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqL----dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAa 496 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQL----DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAA 496 (705)
T ss_pred EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccc----cccCcccceeeeEecCCCceEEeccccceeeeeeccC
Confidence 45557789999999999999999999986632 22221 2232334456789999999999999999999999986
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
....+-. ...-.+..-...++++|.+..+.+++||.|.+|+...+....
T Consensus 497 pTprika-------------------eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr------------ 545 (705)
T KOG0639|consen 497 PTPRIKA-------------------ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR------------ 545 (705)
T ss_pred CCcchhh-------------------hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee------------
Confidence 5432211 000001111123567788888999999999986544332211
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCC-
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSG- 257 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~- 257 (696)
.+.++...+.+ +.+++||..+-+++.|.+++-||...+..+..|.
T Consensus 546 ------------------------qfqGhtDGasc----------Idis~dGtklWTGGlDntvRcWDlregrqlqqhdF 591 (705)
T KOG0639|consen 546 ------------------------QFQGHTDGASC----------IDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF 591 (705)
T ss_pred ------------------------cccCCCCCcee----------EEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence 11122223334 4489999999999999999999999887765554
Q ss_pred -CeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 258 -DAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 258 -~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
.-| .+...|.+.++|+|.+++.|.|-.... .....+.. |..-|.++.|++-|+.+++.+.|+-+-.|.
T Consensus 592 ~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhl--------heScVLSlKFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHL--------HESCVLSLKFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred hhhheecccCCCccceeeecccCcEEEEecCC--ccceeecc--------cccEEEEEEecccCceeeecCchhhhhhcc
Confidence 333 488999999999999999999988764 45566777 899999999999999999999999999999
Q ss_pred ccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+.-+.-+...++ .++|.++.+|.|+ +++++|+
T Consensus 662 tPyGasiFqskE--~SsVlsCDIS~dd----kyIVTGS 693 (705)
T KOG0639|consen 662 TPYGASIFQSKE--SSSVLSCDISFDD----KYIVTGS 693 (705)
T ss_pred Cccccceeeccc--cCcceeeeeccCc----eEEEecC
Confidence 876665555554 4678999888887 8888776
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=5.2e-16 Score=156.60 Aligned_cols=224 Identities=16% Similarity=0.208 Sum_probs=149.8
Q ss_pred EEeCCc-EEEEeeccCCceeeeeeeccee-----cCCC-CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDKE-----LGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~~-----~~~~-~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
|.|+|. .+++++...-...||..+.+.. .++. ..+. ..+||++++||..+..|-|.+-...+ ++++.+++.
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT-~eli~s~Ki 343 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT-KELITSFKI 343 (514)
T ss_pred ecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh-hhhhheeee
Confidence 556666 4555555555567777655322 3444 3455 89999999999999999999999887 888888887
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---e
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---S 374 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~ 374 (696)
.|.|..++|+.||+.|.+.+.+|.|.+||+....+++.+...|.-.-++++.++++ .++++|+ .
T Consensus 344 ---------eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng----~ylA~GS~~Gi 410 (514)
T KOG2055|consen 344 ---------EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNG----SYLATGSDSGI 410 (514)
T ss_pred ---------ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCC----ceEEeccCcce
Confidence 78999999999999999999999999999999999999887544456778888888 8999998 4
Q ss_pred eEEEcCCCc------eEEEEecCCcceE--EEEec-ceeeeeccC--CCCceeeeeeecCCeEEEEecCCCCcceeEEee
Q 005459 375 MMQWDEYGY------RLYAIEEGSSERV--LIFSF-GKCCLNRGV--SGMTYARQVIYGEDRLLVVQSEDTDELKILHLN 443 (696)
Q Consensus 375 ~~~W~~~~~------~l~~~~~~~~~~v--~~~~~-~~~~~s~~~--d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~ 443 (696)
+-+++..+. +.+.+...-...| ++|+. ++.++.+|. ...+++-.+ ....++ . .
T Consensus 411 VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv--PS~TVF--s------------N 474 (514)
T KOG2055|consen 411 VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV--PSCTVF--S------------N 474 (514)
T ss_pred EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec--cceeee--c------------c
Confidence 444553321 1222221112334 33333 444443333 223332111 111000 0 0
Q ss_pred cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
.|.. ...-+.|+|++|||.|-|+|+|-.+|.+ +|.+
T Consensus 475 fP~~-n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 475 FPTS-NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred CCCC-CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 1111 1112238999999999999999999999 9975
No 128
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.73 E-value=5.1e-16 Score=148.98 Aligned_cols=256 Identities=14% Similarity=0.142 Sum_probs=162.4
Q ss_pred EEEe-CCcEEEEeeccCCceeeeeeec-c----eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 225 VLYS-NGQLMSCSVSKKGLKLAEFIKI-D----KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 225 ~~s~-dG~~~~~~~~d~~~~~~~~~~~-~----~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
.|+| ...++++++-|+++|+|++... . ....|..++- ++|+.||..+++|+.|+.+++||+.+ + ....+..
T Consensus 34 ~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S-~-Q~~~v~~ 111 (347)
T KOG0647|consen 34 AFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS-G-QVSQVAA 111 (347)
T ss_pred EeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC-C-Ceeeeee
Confidence 3555 4455667788999999998763 1 1245777776 99999999999999999999999997 4 4555677
Q ss_pred ccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc--e
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG--T 373 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg--~ 373 (696)
|.++|.++.|-+... +|++|+.|+++|.||+.....+.++.-. ..+.+... .+..++-+ .
T Consensus 112 --------Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv------~~pm~vVata~ 175 (347)
T KOG0647|consen 112 --------HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV------LYPMAVVATAE 175 (347)
T ss_pred --------cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc------cCceeEEEecC
Confidence 999999999987665 9999999999999999988888877643 22333221 12222222 2
Q ss_pred -eeEEEcCCCceEEEEecC-----CcceEEEEecceeeeeccCCCCceeeeeeec--CCeEEEEecCCCCcceeEEeecC
Q 005459 374 -SMMQWDEYGYRLYAIEEG-----SSERVLIFSFGKCCLNRGVSGMTYARQVIYG--EDRLLVVQSEDTDELKILHLNLP 445 (696)
Q Consensus 374 -~~~~W~~~~~~l~~~~~~-----~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~--~~~~~~~~~~~~~~~~w~~~~~~ 445 (696)
.+.++++++......... ....|.+|.-.+..+-|+-.|.+-+..+..+ .+...+-+ |.-+-+
T Consensus 176 r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkC---------HR~~~~ 246 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKC---------HRSTNS 246 (347)
T ss_pred CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEE---------eccCCC
Confidence 677777755432211100 0111222222333355555555555444433 12111111 100000
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEE
Q 005459 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIV 510 (696)
Q Consensus 446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv 510 (696)
..+.-.+|.+++|.|.-..||++|.||+. .||-+.+ -|++..+.+.+.+.|..+--.+.+.+
T Consensus 247 --~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar-~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 247 --VNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR-TKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred --CCCceEEecceEeecccceEEEecCCceEEEecchhh-hhhhccCcCCCccceeEecCCCCEEE
Confidence 01113468999999999999999999999 9998764 46666666666555444444444443
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=5.7e-17 Score=163.94 Aligned_cols=264 Identities=13% Similarity=0.109 Sum_probs=180.3
Q ss_pred cEEEEE--ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCC
Q 005459 32 GLLLIA--SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQ 109 (696)
Q Consensus 32 ~lla~~--~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~ 109 (696)
.+++++ +...|.+|... +..+.. ......|++.+++=+|+|.+|+.+|-.|.|.+|.+.++.......
T Consensus 51 ~yllsaq~~rp~l~vw~i~-k~~~~~------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~--- 120 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEIL-KKDQVV------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLS--- 120 (476)
T ss_pred hheeeecccCccccccccC-chhhhh------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHH---
Confidence 455555 45579999985 333222 123346999999999999999999999999999999876422221
Q ss_pred CCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (696)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~ 187 (696)
.+--.|+|+ +.|+..++.|+.||.|..|............ .
T Consensus 121 --------------------aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~----------~------- 163 (476)
T KOG0646|consen 121 --------------------AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDH----------S------- 163 (476)
T ss_pred --------------------hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCC----------C-------
Confidence 222244554 4567889999999999886543211110000 0
Q ss_pred CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEE
Q 005459 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASI 264 (696)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~ 264 (696)
......+.+|.-.|+++.-.... -...+++.+.|.++++||+..+..+ .......++++
T Consensus 164 ----------~~p~~~f~~HtlsITDl~ig~Gg--------~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~l 225 (476)
T KOG0646|consen 164 ----------VKPLHIFSDHTLSITDLQIGSGG--------TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVAL 225 (476)
T ss_pred ----------ccceeeeccCcceeEEEEecCCC--------ccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEE
Confidence 00112345677789888732211 2235778899999999999887654 22233445999
Q ss_pred cCCCcEEEEEecCCeEEEEEccCCC--ce-----eeEEeeccCCCCCCCCC--CeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 265 APEQQILAVGTRRGVVELYDLAESA--SL-----IRTVSLYDWGYSMDDTG--PVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 265 sp~~~~la~g~~dg~v~vw~~~~~~--~~-----~~~~~~~~~~~~~~h~g--~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
.|-.+.+-+|+++|.|.+.++.... +. .....+.+.....+|.+ +|+|++.|-||..|++|++||.|+|||
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence 9999999999999999988875421 00 00011112222335988 999999999999999999999999999
Q ss_pred ccCCeeEEEeecccccceecccccCC
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+...++++++... .+.|+.+.+.|-
T Consensus 306 i~S~Q~iRtl~~~-kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 306 IYSKQCIRTLQTS-KGPVTNLQINPL 330 (476)
T ss_pred cchHHHHHHHhhh-ccccceeEeecc
Confidence 9999999888753 566777777544
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.8e-18 Score=178.87 Aligned_cols=233 Identities=18% Similarity=0.246 Sum_probs=193.0
Q ss_pred CCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC
Q 005459 240 KGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD 318 (696)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd 318 (696)
..+++|+.... ..|..++. +.+-..++.+++|+.|-.+-+|.+.. ...+..+.+ |.++|.+|.|+++
T Consensus 14 t~Lr~~~~~~~---~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-p~~i~S~~~--------hespIeSl~f~~~ 81 (825)
T KOG0267|consen 14 TKLRVWDTREF---VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-PNAITSLTG--------HESPIESLTFDTS 81 (825)
T ss_pred eccccccchhh---hhhhhhhceeeeeccceeeccCCCceeeccccccC-Cchhheeec--------cCCcceeeecCcc
Confidence 34556775433 35666654 55556789999999999999999877 444555777 9999999999999
Q ss_pred CCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce
Q 005459 319 NSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER 395 (696)
Q Consensus 319 g~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~ 395 (696)
...|++|..||+|++||++.++.+++|.+| ...+.++.|+|.+ ++.++|+ ...+||.....+.....+|...
T Consensus 82 E~LlaagsasgtiK~wDleeAk~vrtLtgh-~~~~~sv~f~P~~----~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAKIVRTLTGH-LLNITSVDFHPYG----EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred hhhhcccccCCceeeeehhhhhhhhhhhcc-ccCcceeeeccce----EEeccccccccceehhhhccCceeeecCCcce
Confidence 999999999999999999999999999999 7789999999999 8888888 7889999987888888887766
Q ss_pred E--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 396 V--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 396 v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
+ ..|+| ++.+++++.|.++++||+.+|+- ...|..|..+|.++.|.|..-.++.||.
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~--------------------~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKL--------------------SKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeeccccccc--------------------ccccccccccccccccCchhhhhccCCC
Confidence 5 77788 88999999999999999988875 6789999999999999999999999999
Q ss_pred CccE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEE
Q 005459 473 HGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVC 512 (696)
Q Consensus 473 dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~ 512 (696)
|+++ +||+++ ..+.....+| .+.|++..+..+.-++.
T Consensus 217 d~tv~f~dlet--fe~I~s~~~~-~~~v~~~~fn~~~~~~~ 254 (825)
T KOG0267|consen 217 DRTVRFWDLET--FEVISSGKPE-TDGVRSLAFNPDGKIVL 254 (825)
T ss_pred Cceeeeeccce--eEEeeccCCc-cCCceeeeecCCceeee
Confidence 9999 999976 3344443344 33477888877766554
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=4.1e-18 Score=180.01 Aligned_cols=214 Identities=16% Similarity=0.184 Sum_probs=181.9
Q ss_pred EeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
-..++.+++++.+..+.+|....+... .+|+.+|. +.|+++..+||.|+.+|+|++||+.. +..++++.+
T Consensus 37 ~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee-Ak~vrtLtg----- 110 (825)
T KOG0267|consen 37 RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE-AKIVRTLTG----- 110 (825)
T ss_pred eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh-hhhhhhhhc-----
Confidence 567888888888888888887665432 68999997 99999999999999999999999998 888899999
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (696)
|...+.++.|+|-|.+.|+|+.|..+++||....-|.++.++| ...|..++|+|+| ..+++|. ++.+||
T Consensus 111 ---h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~-~~vv~~l~lsP~G----r~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 111 ---HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH-TRVVDVLRLSPDG----RWVASGGEDNTVKIWD 182 (825)
T ss_pred ---cccCcceeeeccceEEeccccccccceehhhhccCceeeecCC-cceeEEEeecCCC----ceeeccCCcceeeeec
Confidence 9999999999999999999999999999999977789999986 7889999999999 8888887 899999
Q ss_pred CCCceEEEEecCCcceEEEEec--ce-eeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 380 EYGYRLYAIEEGSSERVLIFSF--GK-CCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~--~~-~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
...+++...+++|..++..++| .+ .+++|+.|.++++|++.+-+- ..........|+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~--------------------I~s~~~~~~~v~ 242 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV--------------------ISSGKPETDGVR 242 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE--------------------eeccCCccCCce
Confidence 9999999999999999866665 33 467899999999999764221 111122255799
Q ss_pred EEEEcCCCCEEEEEeCCc
Q 005459 457 HVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG 474 (696)
+.+|+|||+.+++|-...
T Consensus 243 ~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 243 SLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeecCCceeeecCchhh
Confidence 999999999999887654
No 132
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=1.6e-15 Score=144.83 Aligned_cols=222 Identities=16% Similarity=0.217 Sum_probs=167.1
Q ss_pred CCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCc-----ee-eEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEE
Q 005459 255 GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESAS-----LI-RTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVG 325 (696)
Q Consensus 255 ~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~-----~~-~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg 325 (696)
-|.+.|. +.+.+ .|+++.+|+.||.|.|||++.... ++ +..-....+....|+-.|.++-|-| |.-.+.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4677777 88877 699999999999999999976220 11 1111111233446899999999999 77788899
Q ss_pred EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec-
Q 005459 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF- 401 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~- 401 (696)
+-|++++|||+.+-+..-.++.. ..|.+-+++|-. .+...++.|. ++++=|...+..-.++.||.+.|++++.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me--~~VYshamSp~a-~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKME--GKVYSHAMSPMA-MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccceEEEeecccceeeEEeecC--ceeehhhcChhh-hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999998877777653 457777777763 2334566665 8889999999999999999999966655
Q ss_pred ---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-E
Q 005459 402 ---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (696)
Q Consensus 402 ---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~ 477 (696)
.=.++|++.|+.+++||+......+.+..-+.. ...++.++-.+|++.+..+||+.||+++++.|.|..+ +
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-----k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-----KRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRV 272 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccC-----ccCccccccccccceeeeeeecccchhhhhccCccceEE
Confidence 234789999999999999877554333322221 0111223445899999999999999999999999999 9
Q ss_pred EEccCCc
Q 005459 478 YDIRQKK 484 (696)
Q Consensus 478 w~~~sg~ 484 (696)
|+..+|+
T Consensus 273 wn~~~G~ 279 (397)
T KOG4283|consen 273 WNMESGR 279 (397)
T ss_pred eecccCc
Confidence 9999987
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=1.7e-16 Score=169.23 Aligned_cols=197 Identities=14% Similarity=0.189 Sum_probs=148.5
Q ss_pred EEEcC-CCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEcc
Q 005459 262 ASIAP-EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 262 v~~sp-~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~ 337 (696)
|.|+. +.++||+++.+|.|.+||+.... ..+..+.. |+..|.++.|++ ..++|++|+.||+|++||+.
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E--------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE--------HERSANKLDFHSTEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhh--------hccceeeeeeccCCccEEEecCCCceEEEEeee
Confidence 66664 57899999999999999998632 23334555 999999999998 67899999999999999998
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (696)
...-..++.+. ..+|..++|+|.. +...+++...|.+++|
T Consensus 165 ~~~S~~t~~~n-SESiRDV~fsp~~---------------------------------------~~~F~s~~dsG~lqlW 204 (839)
T KOG0269|consen 165 SKKSKSTFRSN-SESIRDVKFSPGY---------------------------------------GNKFASIHDSGYLQLW 204 (839)
T ss_pred ccccccccccc-chhhhceeeccCC---------------------------------------CceEEEecCCceEEEe
Confidence 87766666654 4445555555542 2334566778899999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceee
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~ 496 (696)
|+.+.+. .-..+.+|++||.++.|+|++.+||+||+|+.+ +|++.+.+-+. ...-+.-
T Consensus 205 DlRqp~r-------------------~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~--~~tInTi 263 (839)
T KOG0269|consen 205 DLRQPDR-------------------CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP--KHTINTI 263 (839)
T ss_pred eccCchh-------------------HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc--eeEEeec
Confidence 9988765 344678999999999999999999999999999 99999876432 1122233
Q ss_pred eEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC
Q 005459 497 IQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 497 ~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
..|..+.|-+. +.++.|.. ..+++|++|+..
T Consensus 264 apv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvr 296 (839)
T KOG0269|consen 264 APVGRVKWRPARSYHLATCSM--VVDTSVHVWDVR 296 (839)
T ss_pred ceeeeeeeccCccchhhhhhc--cccceEEEEeec
Confidence 33667999643 44555443 456899999976
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=153.62 Aligned_cols=268 Identities=18% Similarity=0.268 Sum_probs=183.6
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCcee-e-EEEeecChHHHhhcccccEEEEcCCCc-EEEEEecCcEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKV-R-LGKYKRDSESVQREGENLQAVWSPDTK-LIAVVTSSLYLHIFK 95 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~-~-l~~~~r~~~sl~~~G~~~~v~wsPDg~-~lav~t~dg~l~l~~ 95 (696)
+....|.|.|...+|.+++ |++++|+.++ ..+ + +.... + +.-++.+++|.|+|+ .+++++...|+..||
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~~lqS~~-----l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNPKLQSIH-----L-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEec-CccChhheeee-----e-ccCccceeeecCCCceEEEecccceEEEEee
Confidence 4566699999999888774 8899999986 221 1 11111 1 124677999999999 899999999999999
Q ss_pred EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCcc-ccceeeccCCC
Q 005459 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEF-YGAFELVHSSN 174 (696)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~-~~~~~~~~~p~ 174 (696)
+.+.+.... +++-+. + .....-..+++++..|++.+.+|.|+++.-.... .....
T Consensus 287 le~ak~~k~---~~~~g~---------e------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K------ 342 (514)
T KOG2055|consen 287 LETAKVTKL---KPPYGV---------E------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK------ 342 (514)
T ss_pred ccccccccc---cCCCCc---------c------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee------
Confidence 986653211 111100 0 0011123456788899999999999987533211 11111
Q ss_pred CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-
Q 005459 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE- 253 (696)
Q Consensus 175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~- 253 (696)
-.+.+.++ .|++||+.++..+.++.+.+||+....+.
T Consensus 343 --------------------------------ieG~v~~~----------~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 343 --------------------------------IEGVVSDF----------TFSSDSKELLASGGTGEVYVWNLRQNSCLH 380 (514)
T ss_pred --------------------------------eccEEeeE----------EEecCCcEEEEEcCCceEEEEecCCcceEE
Confidence 12234444 37899999999999999999998876543
Q ss_pred ----cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 254 ----LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 254 ----~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
.|....+.++.|+++++||+|+..|.|-|||.++- .+++.++.. -+-.|++|.|+||++.||.
T Consensus 381 rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--------Ltt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 381 RFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--------LTTAITSLQFNHDAQILAI 452 (514)
T ss_pred EEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--------hheeeeeeeeCcchhhhhh
Confidence 23233445888999999999999999999996541 233444433 4667999999999999988
Q ss_pred EEc--CCcEEEEEccCCeeEEEeecc--cccceecccccCCCCCCccceecc
Q 005459 325 GWK--SRGLTVWSVSGCRLMSTIRQI--SLSSISSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 325 g~~--Dg~v~vW~~~~~~~~~~l~~~--~~~~v~~~~~sp~~~~~~~~l~sg 372 (696)
++. +..+|+-.+..+.....+... ....|+|++|+|.+ -+++-|
T Consensus 453 aS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~s----G~lAvG 500 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNS----GYLAVG 500 (514)
T ss_pred hhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCC----ceEEee
Confidence 765 578999988887766655532 13458899999987 555544
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=2.2e-14 Score=148.90 Aligned_cols=263 Identities=12% Similarity=0.119 Sum_probs=168.9
Q ss_pred CcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMD 305 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 305 (696)
++++++++.|+.+++||..+++.. ..+.....++|+|+++.+ ++++.++.|++||..+ ++..+.+..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~-------- 71 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPS-------- 71 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccC--------
Confidence 356677777888888887655432 334444459999999876 6778899999999987 666555544
Q ss_pred CCCCeEEEEECCCCCeEEEE-EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce----eeEEEcC
Q 005459 306 DTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDE 380 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~ 380 (696)
+.. +..++|+|||+.++++ +.|+.+++||+.+.+.+..+..+ ..+.+++++|++ ..++.+. .+..|+.
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg----~~l~~~~~~~~~~~~~d~ 144 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDG----KIVVNTSETTNMAHFIDT 144 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCC----CEEEEEecCCCeEEEEeC
Confidence 333 5678999999977655 56899999999998888777643 235778999998 6666544 3556798
Q ss_pred CCceEEEEec-CCcceEEEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 381 YGYRLYAIEE-GSSERVLIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 381 ~~~~l~~~~~-~~~~~v~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
+++++..... ++...-..+++ ++.+ +++..++.+++|++..++....+.. ..+..... ......
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~------------~~~~~~~~-~~~~~~ 211 (300)
T TIGR03866 145 KTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF------------EIPGVHPE-AVQPVG 211 (300)
T ss_pred CCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee------------cccccccc-cCCccc
Confidence 8877665432 22223356666 6666 4556789999999876543100000 00000000 011235
Q ss_pred EEEcCCCCEEEEE-eCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 458 VAASKDGMFLAVA-GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 458 va~s~dG~~la~a-g~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
++|+|||++++++ +.++.+ +||.++++-... ... .-.+.++.|. ++.|++++ ..+.+|++|+.+
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~--~~~~~~~~~~~~g~~l~~~~----~~~~~i~v~d~~ 279 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDY--LLV--GQRVWQLAFTPDEKYLLTTN----GVSNDVSVIDVA 279 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE--EEe--CCCcceEEECCCCCEEEEEc----CCCCeEEEEECC
Confidence 8899999986554 445567 999987653221 111 1125578886 44666552 234689999886
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.69 E-value=2.4e-14 Score=148.66 Aligned_cols=224 Identities=13% Similarity=0.162 Sum_probs=154.1
Q ss_pred EEEEeCCcEE-EEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeEEeec
Q 005459 224 FVLYSNGQLM-SCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 224 ~~~s~dG~~~-~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
+.+++||+.+ +++..++.+.+|+...++.. ..+.....++++|+++.++++ ..|+.+++||+.+ .+.+..+..
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~~- 113 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIET-RKVLAEIPV- 113 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC-CeEEeEeeC-
Confidence 4578899865 45567788999998765432 334444558999999977655 5689999999987 555555543
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-cEEEEEccCCeeEEEeecccccceecccccCCCCCCccce-ecc---e
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSG---T 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg---~ 373 (696)
...+.+++|+|||+.++++..++ .+.+||..++.....+... ....+++|+|++ +.+ +++ .
T Consensus 114 --------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg----~~l~~~~~~~~ 179 (300)
T TIGR03866 114 --------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD--QRPRFAEFTADG----KELWVSSEIGG 179 (300)
T ss_pred --------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC--CCccEEEECCCC----CEEEEEcCCCC
Confidence 23468899999999999998875 4677899888776655432 235668899998 655 333 2
Q ss_pred eeEEEcCCCceEEEEecCC-----cceE----EEEec-ceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe
Q 005459 374 SMMQWDEYGYRLYAIEEGS-----SERV----LIFSF-GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL 442 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~-----~~~v----~~~~~-~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~ 442 (696)
.+.+|+.++++++.....+ ...+ +.+++ ++.+ ++.+.++.+.+|++..++..
T Consensus 180 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~----------------- 242 (300)
T TIGR03866 180 TVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL----------------- 242 (300)
T ss_pred EEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-----------------
Confidence 7899999988776544311 1111 44566 5553 44455667888886543321
Q ss_pred ecCeeeecCCCceEEEEEcCCCCEEEEE-eCCccE-EEEccCCc
Q 005459 443 NLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKK 484 (696)
Q Consensus 443 ~~~~~~~~~~~~I~~va~s~dG~~la~a-g~dG~i-~w~~~sg~ 484 (696)
....+...+.+++|+|||++|+++ +.+|.+ +||+.+++
T Consensus 243 ----~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 243 ----DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred ----EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 111223368899999999999886 568999 99999876
No 137
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=6.2e-15 Score=142.24 Aligned_cols=264 Identities=13% Similarity=0.149 Sum_probs=183.7
Q ss_pred ceEEEEEeCCc-EEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459 22 QQIIYFKVNNG-LLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (696)
Q Consensus 22 ~~~v~fs~dg~-lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~ 100 (696)
..-+.|+|.+. |||+.-|++++++++. ..... ..+.+.+++.+.+|.++ ..+++++.||.|+.||+.+++
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~-~~~l~-------~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVP-ANSLK-------LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN 86 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEecc-chhhh-------hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc
Confidence 34488998865 6666689999999996 21111 22445688999999974 678999999999999998765
Q ss_pred cccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC--CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 101 KSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
... +..++..+.|+... .+.+++|+.|+.|.. ||.-.....
T Consensus 87 ~~~------------------------igth~~~i~ci~~~~~~~~vIsgsWD~~ik~--wD~R~~~~~----------- 129 (323)
T KOG1036|consen 87 EDQ------------------------IGTHDEGIRCIEYSYEVGCVISGSWDKTIKF--WDPRNKVVV----------- 129 (323)
T ss_pred cee------------------------eccCCCceEEEEeeccCCeEEEcccCccEEE--Eeccccccc-----------
Confidence 321 23344566666544 678999999999998 554321000
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----- 253 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----- 253 (696)
........|.+| +-.|..++++..+..+..||+.+....
T Consensus 130 ------------------------~~~d~~kkVy~~------------~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 130 ------------------------GTFDQGKKVYCM------------DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred ------------------------cccccCceEEEE------------eccCCEEEEeecCceEEEEEcccccchhhhcc
Confidence 000111245443 456888888888999999998764321
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCC-CCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGY-SMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~-~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
..-.-.++ ++..|++.-.|+++-||.|.|=.+++.. +....++.+..-. ..+---||++|+|+|--..||||+.|
T Consensus 174 S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsD 253 (323)
T KOG1036|consen 174 SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSD 253 (323)
T ss_pred ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCC
Confidence 11223344 8999999999999999999887776621 2233444411100 00012379999999998999999999
Q ss_pred CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc
Q 005459 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg 372 (696)
|-|.+||.+.++.++.|... ..+|.+++|+-++ ..++.+
T Consensus 254 G~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG----~~LAia 292 (323)
T KOG1036|consen 254 GIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDG----SLLAIA 292 (323)
T ss_pred ceEEEccCcchhhhhhccCC-CCceEEEEeccCC----CeEEEE
Confidence 99999999999988888877 6679999999998 666644
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-15 Score=152.21 Aligned_cols=228 Identities=16% Similarity=0.216 Sum_probs=167.4
Q ss_pred ccCCceeeeeeecceec----CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459 238 SKKGLKLAEFIKIDKEL----GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (696)
Q Consensus 238 ~d~~~~~~~~~~~~~~~----~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l 313 (696)
....+.+|......... -.....|++-+|+|.+|+.|+..|.+.+|.+.+ +.++..+.. |-.+|+|+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelss-G~LL~v~~a--------HYQ~ITcL 129 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSS-GILLNVLSA--------HYQSITCL 129 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEecc-ccHHHHHHh--------hccceeEE
Confidence 34456677765443221 112234588999999999999999999999999 888888888 99999999
Q ss_pred EECCCCCeEEEEEcCCcEEEEEcc---------CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 314 AWTPDNSAFAVGWKSRGLTVWSVS---------GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 314 ~~spdg~~lasg~~Dg~v~vW~~~---------~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
.|+-||.+|++|+.||.|.+|++. .-..++.+.+| .-+|+.+...+-+ ....+.|.+ ++++|++.
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H-tlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS 206 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH-TLSITDLQIGSGG--TNARLYTASEDRTIKLWDLS 206 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC-cceeEEEEecCCC--ccceEEEecCCceEEEEEec
Confidence 999999999999999999999873 33467777777 5668888776654 224555655 99999999
Q ss_pred CceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCC-eE-EEEecCCCCcceeEEeecCeeeecCCC--c
Q 005459 382 GYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGED-RL-LVVQSEDTDELKILHLNLPVSYISQNW--P 454 (696)
Q Consensus 382 ~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~-~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~--~ 454 (696)
.+.++....- ...+ +++++ .+.+..|+.+|.+.+-++.+... +. ...++.+ -+.. -...+.+|.. +
T Consensus 207 ~g~LLlti~f-p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~-----~~~t-~~~~~~Gh~~~~~ 279 (476)
T KOG0646|consen 207 LGVLLLTITF-PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH-----EENT-QINVLVGHENESA 279 (476)
T ss_pred cceeeEEEec-CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccc-----cccc-eeeeeccccCCcc
Confidence 9998887643 2233 77788 66777888888876655443321 00 0000000 0011 1235678887 9
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
|.|+++|-||..|++|+.||.+ +||+.+++
T Consensus 280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred eeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 9999999999999999999999 99999876
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2e-14 Score=138.82 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=177.4
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEE-EeeeCCCeEE
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVS-NIVSDNKHML 146 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~-~~~~~~~~ll 146 (696)
..+.++.|+|.++.|++++-||+|++|++.....++.. . +..++. |-..+...++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-----------------~-------~~~plL~c~F~d~~~~~ 69 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-----------------K-------HGAPLLDCAFADESTIV 69 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-----------------e-------cCCceeeeeccCCceEE
Confidence 45678999999999999999999999999754321110 1 111222 2233457899
Q ss_pred EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (696)
Q Consensus 147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (696)
+|+-||.|++++.+..... .+..|...|.+|+|.+.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~-------------------------------------~igth~~~i~ci~~~~~------- 105 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNED-------------------------------------QIGTHDEGIRCIEYSYE------- 105 (323)
T ss_pred EeccCceEEEEEecCCcce-------------------------------------eeccCCCceEEEEeecc-------
Confidence 9999999999877643221 23346677899886542
Q ss_pred EeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSM 304 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 304 (696)
-..+++++-|+++++||....... ....+.|. +.+-.++.|++|+.|..|.+||+++..... +.....
T Consensus 106 ---~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy-~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~-q~reS~----- 175 (323)
T KOG1036|consen 106 ---VGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY-CMDVSGNRLVVGTSDRKVLIYDLRNLDEPF-QRRESS----- 175 (323)
T ss_pred ---CCeEEEcccCccEEEEeccccccccccccCceEE-EEeccCCEEEEeecCceEEEEEcccccchh-hhcccc-----
Confidence 334667788999999998753222 12223332 345568899999999999999998733322 111111
Q ss_pred CCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE----EEeecccccceecccccCCCCCCccceecceeeEEEcC
Q 005459 305 DDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM----STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDE 380 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~----~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~ 380 (696)
-+-.++|+++-|++.-.|+++-||.|.+=.+...... ..++-| +.. .
T Consensus 176 -lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCH-----------r~~-----------------~ 226 (323)
T KOG1036|consen 176 -LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCH-----------RLS-----------------E 226 (323)
T ss_pred -ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEee-----------ecc-----------------c
Confidence 2456999999999999999999999887555443111 111111 000 0
Q ss_pred CCceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEE
Q 005459 381 YGYRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQH 457 (696)
Q Consensus 381 ~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~ 457 (696)
.+.+++. +| ++|++ -+.++||+.||.+.+|++...+. ...+..-...|-+
T Consensus 227 ~~~~~~y-------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr--------------------l~q~~~~~~SI~s 279 (323)
T KOG1036|consen 227 KDTEIIY-------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR--------------------LKQLAKYETSISS 279 (323)
T ss_pred CCceEEE-------EeceeEeccccceEEecCCCceEEEccCcchhh--------------------hhhccCCCCceEE
Confidence 0111111 23 45555 67799999999999999755433 2223333446999
Q ss_pred EEEcCCCCEEEEEeC
Q 005459 458 VAASKDGMFLAVAGL 472 (696)
Q Consensus 458 va~s~dG~~la~ag~ 472 (696)
++|+.||..||+|+.
T Consensus 280 lsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 280 LSFSMDGSLLAIASS 294 (323)
T ss_pred EEeccCCCeEEEEec
Confidence 999999999999985
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=1.1e-14 Score=141.37 Aligned_cols=220 Identities=12% Similarity=0.177 Sum_probs=156.6
Q ss_pred EEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCC
Q 005459 232 LMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDD 306 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h 306 (696)
+++.++..|.|++.|....+. +.+|..++. +.+.|+ -+++.+|+.|.+||+|++++ ..++..+-+.. +|
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~-~~Cv~VfGG~e-----gH 180 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT-DVCVAVFGGVE-----GH 180 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC-CeEEEEecccc-----cc
Confidence 455556677888988877654 378999999 999996 57999999999999999998 78888776633 59
Q ss_pred CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe---------------------------ecccccceeccccc
Q 005459 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI---------------------------RQISLSSISSPIVK 359 (696)
Q Consensus 307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l---------------------------~~~~~~~v~~~~~s 359 (696)
.+.|.++.|++||.+|+|++.|..+++|++...+....+ ...|.+.|.++.|-
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~ 260 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF 260 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH
Confidence 999999999999999999999999999998633211111 11113344444442
Q ss_pred CCCCCCccceecce---eeEEEcCCCce--------------EEEEecCCcceE----EEEec-ceeeeeccCCCCceee
Q 005459 360 PNQDCKYEPLMSGT---SMMQWDEYGYR--------------LYAIEEGSSERV----LIFSF-GKCCLNRGVSGMTYAR 417 (696)
Q Consensus 360 p~~~~~~~~l~sg~---~~~~W~~~~~~--------------l~~~~~~~~~~v----~~~~~-~~~~~s~~~d~~~~~w 417 (696)
- ++++|-+ .+..|-++..+ .+..+.-....+ +++++ .+.++.++..|.+.+|
T Consensus 261 g------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 261 G------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVW 334 (385)
T ss_pred h------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEE
Confidence 2 3444433 78889883211 111111122223 33334 8899999999999999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCeeeec--CCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS--QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~--~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
++...+... -.++.. ....||..+||.||..|+....||++ -||..
T Consensus 335 dL~~~ep~~------------------~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 335 DLDNNEPPK------------------CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ECCCCCCcc------------------CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 987766510 112221 24579999999999999999999999 99864
No 141
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.66 E-value=3.4e-15 Score=151.00 Aligned_cols=243 Identities=13% Similarity=0.124 Sum_probs=174.7
Q ss_pred cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCcee---------eEEeeccCCCCCCCCCCeEEEEECCC-CCe
Q 005459 254 LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLI---------RTVSLYDWGYSMDDTGPVSCIAWTPD-NSA 321 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~---------~~~~~~~~~~~~~h~g~V~~l~~spd-g~~ 321 (696)
..|.+-|+ +..-|+ -.++|+++.++.|.|||........ .++.+ |++.=..|+|++. .-.
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g--------H~~eg~glsWn~~~~g~ 192 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG--------HEKEGYGLSWNRQQEGT 192 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe--------eccccccccccccccee
Confidence 35677777 888885 5678889999999999987633222 15666 8887888999994 448
Q ss_pred EEEEEcCCcEEEEEccCCe-------eEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC--CceEEEEe
Q 005459 322 FAVGWKSRGLTVWSVSGCR-------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY--GYRLYAIE 389 (696)
Q Consensus 322 lasg~~Dg~v~vW~~~~~~-------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~--~~~l~~~~ 389 (696)
|++|+.|++|++||+.... ....+.+| .+.|..++|+|..+ ..+.+.+ ..++||.+ +.+.-...
T Consensus 193 Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~---~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 193 LLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHE---DLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred EeeccCCCcEEEEeccccccCCccccceEEeecC-Ccceehhhccccch---hhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 8999999999999995432 23455666 78899999999862 2333322 89999999 56666677
Q ss_pred cCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-
Q 005459 390 EGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG- 464 (696)
Q Consensus 390 ~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG- 464 (696)
.+|...|.++.| .-.++|++.|+++.+||+..-.. .+.++.+|...|..|.|||+-
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------~lh~~e~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------PLHTFEGHEDEVFQVEWSPHNE 329 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc-------------------CceeccCCCcceEEEEeCCCCC
Confidence 789999966555 66789999999999999987766 367889999999999999976
Q ss_pred CEEEEEeCCccE-EEEccCCceEe---c-CCccceeee-------EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 465 MFLAVAGLHGLI-LYDIRQKKWRV---F-GDITQEQKI-------QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 465 ~~la~ag~dG~i-~w~~~sg~w~~---f-~~~~~e~~~-------~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
..||++|.|+.+ +||+..=--+. . .+-..|--| .|..+.|.++.-=+.|++ +++..|++|.-.
T Consensus 330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sv--aeDN~LqIW~~s 404 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASV--AEDNILQIWQMA 404 (422)
T ss_pred ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEe--cCCceEEEeecc
Confidence 478999999999 99985411010 0 000011112 255688986543222223 445789999653
No 142
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=8.9e-15 Score=139.77 Aligned_cols=292 Identities=16% Similarity=0.186 Sum_probs=179.1
Q ss_pred cceeEEEeeeC---CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCC
Q 005459 131 KGLSVSNIVSD---NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPI 207 (696)
Q Consensus 131 ~~~~v~~~~~~---~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~ 207 (696)
+.++|.++.-+ +.+|+.|..||.|.+++.......+... .-+...++ + .+..-..|
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~--v-----------------~~~h~~~H 100 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCI--V-----------------AKQHENGH 100 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeee--c-----------------cccCCccc
Confidence 34566666544 5789999999999987655332111100 00000000 0 00112345
Q ss_pred cccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcC---CCcEEEEEecCCeEE
Q 005459 208 SSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAP---EQQILAVGTRRGVVE 281 (696)
Q Consensus 208 ~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp---~~~~la~g~~dg~v~ 281 (696)
+-.|.++.|.| -|--.+.+++-|.++++||..+.+.. ..-++-|. -++|| ...+||+|..|-.|+
T Consensus 101 ky~iss~~WyP---------~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 101 KYAISSAIWYP---------IDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred eeeeeeeEEee---------ecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEE
Confidence 55566554333 24445566678999999998876543 12234455 67777 356999999999999
Q ss_pred EEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCC-eeEEEeeccc----------
Q 005459 282 LYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGC-RLMSTIRQIS---------- 349 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~-~~~~~l~~~~---------- 349 (696)
+.|+.. +...+++.+ |++.|.++.|||... .||+|+.||.|++||+... -++.++..|.
T Consensus 172 LCDi~S-Gs~sH~LsG--------Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n 242 (397)
T KOG4283|consen 172 LCDIAS-GSFSHTLSG--------HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTN 242 (397)
T ss_pred EEeccC-Ccceeeecc--------ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccc
Confidence 999998 899999999 999999999999655 7899999999999999654 3455555442
Q ss_pred ---ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecC---CcceEEEEecceeeeeccCCCCceeeeee
Q 005459 350 ---LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEG---SSERVLIFSFGKCCLNRGVSGMTYARQVI 420 (696)
Q Consensus 350 ---~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~---~~~~v~~~~~~~~~~s~~~d~~~~~w~~~ 420 (696)
.+.|+.++|..++ ..+++.. .++.|+.+.++--....+ |..+. .+.+ . +. +.|..+ ..+.
T Consensus 243 ~ah~gkvngla~tSd~----~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~--~-~~-~~~s~v--fv~~ 311 (397)
T KOG4283|consen 243 TAHYGKVNGLAWTSDA----RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAV--H-IQ-SMDSDV--FVLF 311 (397)
T ss_pred ccccceeeeeeecccc----hhhhhccCccceEEeecccCcccccccccccccccc-cceE--E-Ee-ecccce--EEEE
Confidence 3457777887777 5555443 788898877653222111 11111 0000 0 11 111111 1111
Q ss_pred ecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 421 YGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
..++.++++...+-. ....+..|-..|.+.++-||=+...+|..||.+ .|..
T Consensus 312 p~~~~lall~~~sgs--------~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 312 PNDGSLALLNLLEGS--------FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ecCCeEEEEEccCce--------EEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence 111222222211110 123445676779999999999999999999999 9977
No 143
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=2.2e-15 Score=156.77 Aligned_cols=234 Identities=21% Similarity=0.306 Sum_probs=160.0
Q ss_pred CCcEEEE--EecCCeEEEEEccCCCce----eeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC
Q 005459 267 EQQILAV--GTRRGVVELYDLAESASL----IRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 267 ~~~~la~--g~~dg~v~vw~~~~~~~~----~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+...+|+ .+..|.|-||+++..+++ +..+. ....|+++.|.| |...||++.+||.|++|.+..+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~---------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF---------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcccccccc---------cCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 3445554 566799999999886543 22222 245699999999 9999999999999999998755
Q ss_pred eeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEE--EEec--ceeeeeccCCCCce
Q 005459 340 RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVL--IFSF--GKCCLNRGVSGMTY 415 (696)
Q Consensus 340 ~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~--~~~~--~~~~~s~~~d~~~~ 415 (696)
-+- +... ..-..+..|.+.|. .|++ ...++++++|.+++
T Consensus 661 gl~------------------------e~~~-------------tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 661 GLP------------------------ENEM-------------TPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIE 703 (1012)
T ss_pred CCC------------------------cccC-------------CcceeeecccceEEEEEecchhhhHhhhhhccceee
Confidence 311 1111 01112235666774 4444 67789999999999
Q ss_pred eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccce
Q 005459 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQE 494 (696)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e 494 (696)
+||+..+.. -..+.+|++.|..+||||||+.+|+.+.||.+ +|+..++.-.++ |
T Consensus 704 lWDl~~~~~--------------------~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~-----E 758 (1012)
T KOG1445|consen 704 LWDLANAKL--------------------YSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY-----E 758 (1012)
T ss_pred eeehhhhhh--------------------hheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc-----c
Confidence 999998887 45788999999999999999999999999999 999999875553 3
Q ss_pred eeeEE--E--eEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecC--CccEEEEccCCE-EEEEEcCceE
Q 005459 495 QKIQS--K--GLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLL--AKPIVMDVYEDY-ILVTYRPFDV 565 (696)
Q Consensus 495 ~~~~v--~--~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~-llv~~~d~~~ 565 (696)
..-.| + .+.|- ++++|+.++ +...+.+|.+|+.+.|+... +.+..+. ..++.-..+.|. ++..+..++-
T Consensus 759 g~gpvgtRgARi~wacdgr~viv~Gf-dk~SeRQv~~Y~Aq~l~~~p-l~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~ 836 (1012)
T KOG1445|consen 759 GKGPVGTRGARILWACDGRIVIVVGF-DKSSERQVQMYDAQTLDLRP-LYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDR 836 (1012)
T ss_pred CCCCccCcceeEEEEecCcEEEEecc-cccchhhhhhhhhhhccCCc-ceeeeecccCccccccccCCCceEEEecCCCc
Confidence 32222 2 36774 677776655 34566899999998777543 2333233 233433333333 3333556666
Q ss_pred EEEEEEEe
Q 005459 566 HIFHVKLF 573 (696)
Q Consensus 566 ~l~~~~~~ 573 (696)
.+|-|++.
T Consensus 837 ~v~~yEv~ 844 (1012)
T KOG1445|consen 837 FVNMYEVI 844 (1012)
T ss_pred eEEEEEec
Confidence 66666654
No 144
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.65 E-value=5.5e-15 Score=146.51 Aligned_cols=212 Identities=16% Similarity=0.212 Sum_probs=150.6
Q ss_pred CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEE
Q 005459 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQW 378 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W 378 (696)
+|.-.+|+++|..++|+| +.+.||||++|.+|.||.+..+.+...+.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------------------------- 121 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------------------------- 121 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--------------------------------
Confidence 445557999999999999 77899999999999999997765432221
Q ss_pred cCCCceEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 379 DEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
+.+..+.+|..+| +++++ ...++|++.|.++.+|++.+++.- -+ +.|..-
T Consensus 122 -----epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeal--------------------i~-l~hpd~ 175 (472)
T KOG0303|consen 122 -----EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEAL--------------------IT-LDHPDM 175 (472)
T ss_pred -----cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCcee--------------------ee-cCCCCe
Confidence 2333456777777 66666 667889999999999999999872 22 338999
Q ss_pred eEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeCcE-EEEEEeecCCCeEEEEEeeCCCCC
Q 005459 455 VQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSNTYELLFYPRYHLD 532 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~~~~lr~y~~~~l~ 532 (696)
|.++.|+.||.+++++++|..+ +||..+++--.-+ ..+|..-.. ...|.++. +.+.++. ...+.++-+|+.++|.
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~-Raifl~~g~i~tTGfs-r~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPA-RAIFLASGKIFTTGFS-RMSERQIALWDPNNLE 252 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcc-eeEEeccCceeeeccc-cccccceeccCccccc
Confidence 9999999999999999999999 9999998743322 233332112 34554333 4444443 4566899999999888
Q ss_pred ccceeEEeecCCccEEEEccCCEEEE---EEcCceEEEEEEEE
Q 005459 533 QSSLLCRKSLLAKPIVMDVYEDYILV---TYRPFDVHIFHVKL 572 (696)
Q Consensus 533 ~~~~~~~~~~~~~~l~~~~~~~~llv---~~~d~~~~l~~~~~ 572 (696)
....++..+..+-+|.--.+.|.-++ +=.|+.|+-|+++.
T Consensus 253 eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 253 EPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred CcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence 87666777666655444444444333 44566777776653
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=6.2e-14 Score=135.31 Aligned_cols=151 Identities=13% Similarity=0.205 Sum_probs=114.5
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+..|.+.|++|.+|..-|.+.+|+..+ .+++..++. .+ ..|..+.++-.|.+|+.-..|+.||+++...-
T Consensus 158 ~~~fdr~g~yIitGtsKGkllv~~a~t-~e~vas~ri--------ts~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 158 HGVFDRRGKYIITGTSKGKLLVYDAET-LECVASFRI--------TSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cccccCCCCEEEEecCcceEEEEecch-heeeeeeee--------chheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 347899999999999999999999998 788877776 33 78999999999999999999999999998521
Q ss_pred -------e--eEEEeecc-cccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCcce-E--EEEecc
Q 005459 340 -------R--LMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSSER-V--LIFSFG 402 (696)
Q Consensus 340 -------~--~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~~~-v--~~~~~~ 402 (696)
. +.+.+..- ..-.-.++.|+.++ +++..|+ ...+|.-..|.|+..+.|..+. + +...|.
T Consensus 229 ~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg----eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~ 304 (405)
T KOG1273|consen 229 DDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG----EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPV 304 (405)
T ss_pred cccCccCCcChhHHHHHHHhhhhhhheeecCCc----cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccc
Confidence 1 11111110 01123456788888 8888776 7789999999999999887744 3 456666
Q ss_pred eeeeeccCCCCceeeeeeecCC
Q 005459 403 KCCLNRGVSGMTYARQVIYGED 424 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~ 424 (696)
+.++..-..|.+++|...+-+.
T Consensus 305 rp~i~si~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 305 RPIIASIASGVVYIWAVVQVEN 326 (405)
T ss_pred eeeeeeccCCceEEEEeecccc
Confidence 6555555889999999776554
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2.4e-14 Score=137.83 Aligned_cols=247 Identities=14% Similarity=0.104 Sum_probs=164.8
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc-------eecCCCCeEE-EEEcC-C-CcEEEEEecCCeEEEEEccCC-----
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-------KELGSGDAVC-ASIAP-E-QQILAVGTRRGVVELYDLAES----- 288 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~v~-v~~sp-~-~~~la~g~~dg~v~vw~~~~~----- 288 (696)
+.|..-|+.+++++.|.++++||..... .|..|..++. +.|.+ . |+.+|+++.|++++||.=...
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~ 98 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAH 98 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccc
Confidence 3366789999999999999999964332 2467888887 87765 3 899999999999999985321
Q ss_pred C-c--eeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCe------eEEEee------ccccc
Q 005459 289 A-S--LIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCR------LMSTIR------QISLS 351 (696)
Q Consensus 289 ~-~--~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~------~~~~l~------~~~~~ 351 (696)
+ + ...++.. ..+.|+++.|.| -|-.||+++.||.+||++....- +++.++ +....
T Consensus 99 ~~~Wv~~ttl~D--------srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 99 GRRWVRRTTLVD--------SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cceeEEEEEeec--------CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 1 1 1123333 678999999999 68899999999999999875432 222222 11123
Q ss_pred ceecccccCCCCCCccceecce--------eeEEEcC--CCceE--EEEecCCcceEEEEe--c--c---eeeeeccCCC
Q 005459 352 SISSPIVKPNQDCKYEPLMSGT--------SMMQWDE--YGYRL--YAIEEGSSERVLIFS--F--G---KCCLNRGVSG 412 (696)
Q Consensus 352 ~v~~~~~sp~~~~~~~~l~sg~--------~~~~W~~--~~~~l--~~~~~~~~~~v~~~~--~--~---~~~~s~~~d~ 412 (696)
.-.++.++|.. ...+.++-|+ .+.+|.. .+.+. +..+.+|.+.|..++ | + ..+++++.||
T Consensus 171 ~~~CvsWn~sr-~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 171 PCFCVSWNPSR-MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred cceEEeecccc-ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 34556666432 1123444443 4556643 22233 334568888885444 4 3 4588999999
Q ss_pred CceeeeeeecCCeEEEEecCCCCcc-eeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 413 MTYARQVIYGEDRLLVVQSEDTDEL-KILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
+++|.+......+ ...+...++. .=..++....|.+|+.+|..+.|+-.|..|++.|.||.+ +|..+
T Consensus 250 -v~I~~v~~~~s~i-~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 250 -VRIFKVKVARSAI-EEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred -EEEEEEeeccchh-hhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9999887543322 1111111111 112334455688999999999999999999999999999 99764
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.1e-13 Score=133.42 Aligned_cols=268 Identities=14% Similarity=0.179 Sum_probs=153.6
Q ss_pred eEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcC--CCcEEEEEecCcEEEEEEEEec
Q 005459 23 QIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSP--DTKLIAVVTSSLYLHIFKVQIT 99 (696)
Q Consensus 23 ~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsP--Dg~~lav~t~dg~l~l~~l~~~ 99 (696)
.-+.|.+-|+.+|++ +|.++.|||.+++.. ...++.+=-.+.|.+..+.|.| =|+.+|+++-|+++.||.=+..
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~---~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDSG---TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCCC---ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccc
Confidence 337799999999998 578999999653322 2222221112458899999976 4789999999999999986522
Q ss_pred CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eeeC--CCeEEEEecCCcEEEEecCCcccc-ceeeccCCC
Q 005459 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVSD--NKHMLLGLSDGSLYSISWKGEFYG-AFELVHSSN 174 (696)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~~--~~~llv~t~~g~i~~~~w~~~~~~-~~~~~~~p~ 174 (696)
... .+. .-| .....+......|+. |++. +-.|+++..||.++++.--...+. .-.+
T Consensus 94 ~~~----~~~----~~W------v~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L----- 154 (361)
T KOG2445|consen 94 SEE----AHG----RRW------VRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL----- 154 (361)
T ss_pred ccc----ccc----cee------EEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh-----
Confidence 110 000 011 011112222333433 3332 456788889999999743221111 1100
Q ss_pred CCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc--ceEEEEEeCCcEEEEeeccCCceeeeeeecc-
Q 005459 175 DSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM--RLLFVLYSNGQLMSCSVSKKGLKLAEFIKID- 251 (696)
Q Consensus 175 ~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~- 251 (696)
...+..++. +.......-.++.|++.. ...+++..|.. ....+.+.+|......
T Consensus 155 -q~Ei~~~~~------------------pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~----a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 155 -QHEIQNVID------------------PPGKNKQPCFCVSWNPSRMHEPLIAVGSDED----APHLNKVKIYEYNENGR 211 (361)
T ss_pred -hhhhhhccC------------------CcccccCcceEEeeccccccCceEEEEcccC----CccccceEEEEecCCcc
Confidence 000111111 111122334455555432 12233333320 0011223344332211
Q ss_pred ------eecCCCCeEE-EEEcCC----CcEEEEEecCCeEEEEEccCCC-----------ceeeEEeeccCCCCCCCCCC
Q 005459 252 ------KELGSGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESA-----------SLIRTVSLYDWGYSMDDTGP 309 (696)
Q Consensus 252 ------~~~~~~~~v~-v~~sp~----~~~la~g~~dg~v~vw~~~~~~-----------~~~~~~~~~~~~~~~~h~g~ 309 (696)
.+.+|.++|+ ++|.|. +.+||+++.|| |+||++.... .....+.......-.+|.+.
T Consensus 212 Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 2368999999 999995 67999999999 9999997311 11111111111122359999
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 310 VSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 310 V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
|..++|+-.|..|++.+.||.||+|..
T Consensus 291 VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 291 VWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eEEEEEeeeeeEEeecCCCceeeehhh
Confidence 999999999999999999999999975
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.60 E-value=6.8e-14 Score=141.39 Aligned_cols=278 Identities=12% Similarity=0.128 Sum_probs=176.0
Q ss_pred hcccccEEEEcCCCc--EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee--e-
Q 005459 66 REGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV--S- 140 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~--~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~--~- 140 (696)
..|.+.+++|.|--. ++|+|...|.|-+||+....+.. +....+..+.++|+++. +
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~-------------------d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDK-------------------DGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCcc-------------------CceEEeccCCccccceEecCC
Confidence 357889999999664 89999999999999996322110 11111233444555543 2
Q ss_pred CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459 141 DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 141 ~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
+..+++..+.||+|+..+.++...... .+. ......+.++.
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v----------------~s~------------------~~d~~~fs~~d----- 286 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEV----------------LSL------------------DTDNIWFSSLD----- 286 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHH----------------hhc------------------Cccceeeeecc-----
Confidence 337899999999999877664322111 000 00011122222
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeecce----ecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCceee-
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK----ELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASLIR- 293 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~~~- 293 (696)
++.+.+.++.+.+=+...+||...+.. +.-|..-|+ +++||- -.+||+++.|++.++||++. ....+
T Consensus 287 -----~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~-l~~K~s 360 (498)
T KOG4328|consen 287 -----FSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQ-LRGKAS 360 (498)
T ss_pred -----ccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhh-hcCCCC
Confidence 444444444444444667888775433 345777788 999995 56899999999999999986 22222
Q ss_pred -EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc----CCeeEEEeeccccc----ceecccccCCCCC
Q 005459 294 -TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS----GCRLMSTIRQISLS----SISSPIVKPNQDC 364 (696)
Q Consensus 294 -~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~----~~~~~~~l~~~~~~----~v~~~~~sp~~~~ 364 (696)
.+.. .+|+.+|.+..|||+|-.|++.+.|..|+|||.. .-...+++...+.. ...-.+|.|+.
T Consensus 361 p~lst------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-- 432 (498)
T KOG4328|consen 361 PFLST------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-- 432 (498)
T ss_pred cceec------ccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc--
Confidence 2332 2499999999999988889999999999999983 33445555532111 12234678865
Q ss_pred Cccceecce---eeEEEcCCCceEEEEecCCcc----eEEEEec-ceeeeec-cCCCCceee
Q 005459 365 KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSE----RVLIFSF-GKCCLNR-GVSGMTYAR 417 (696)
Q Consensus 365 ~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~----~v~~~~~-~~~~~s~-~~d~~~~~w 417 (696)
..++.|- .+-+++..+++++..+.+... .+..++| ...+++| +..|.+.+|
T Consensus 433 --~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 433 --NLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred --cEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 6777665 677899999998777544322 3477777 4434444 445555544
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.59 E-value=5.8e-14 Score=142.77 Aligned_cols=213 Identities=17% Similarity=0.208 Sum_probs=163.3
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
..+.|++......++++|+..|+|++||++. ....+.++. |+..|+++.+.-...+||+++.-|.|.|-++
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkd--------h~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKD--------HQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccC--------CcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 4667777677779999999999999999985 555566666 9999999999999999999999999999999
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccce-ecce---eeEEEcCCCceEEEEe-cCCcceE--EEEec--ceeeee
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL-MSGT---SMMQWDEYGYRLYAIE-EGSSERV--LIFSF--GKCCLN 407 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l-~sg~---~~~~W~~~~~~l~~~~-~~~~~~v--~~~~~--~~~~~s 407 (696)
.++.-..+|.......|.-+.|+|.. +.+ .+.+ .+-+||..+...++.. +.|..+. ++|++ .+.+++
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~sk----r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSK----RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ccCccccceecCCCCeEEEeeccccc----ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 99987778876534557788898875 433 3333 8899999887766544 4566555 88888 677899
Q ss_pred ccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE
Q 005459 408 RGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR 486 (696)
Q Consensus 408 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~ 486 (696)
.+.|..+.++|...... ..-+.-.-|..+++|+++|.+|+.|...|.+ .||++..+-.
T Consensus 227 VG~Dkki~~yD~~s~~s---------------------~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P 285 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------------------TDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP 285 (673)
T ss_pred ecccceEEEeecccccc---------------------cceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence 99999999988753322 1112234488999999999999999999999 9999987644
Q ss_pred ecCCccceeeeEEEeEeee
Q 005459 487 VFGDITQEQKIQSKGLLWL 505 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~ 505 (696)
+--. +..+-.|+.++|-
T Consensus 286 v~v~--sah~~sVt~vafq 302 (673)
T KOG4378|consen 286 VAVR--SAHDASVTRVAFQ 302 (673)
T ss_pred ceEe--eecccceeEEEee
Confidence 3221 2222237777775
No 150
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=2.4e-12 Score=135.21 Aligned_cols=261 Identities=15% Similarity=0.182 Sum_probs=173.4
Q ss_pred ceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
..-++|.|||.-|..+.++.+.|+|.+ .+.++..++. +...+.+++||.||+++|++++|..+.+|+-+-...
T Consensus 15 i~d~afkPDGsqL~lAAg~rlliyD~n-dG~llqtLKg------HKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAAGSRLLVYDTS-DGTLLQPLKG------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred hheeEECCCCceEEEecCCEEEEEeCC-Cccccccccc------ccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 334899999999988999999999997 6666665553 335678999999999999999999999998763332
Q ss_pred ccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeC--CCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459 102 SIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSD--NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (696)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~ 179 (696)
..+ .+...|.|++.+ ...++.++-+ ..-. |..+....
T Consensus 88 LkY-------------------------SH~D~IQCMsFNP~~h~LasCsLs-dFgl--WS~~qK~V------------- 126 (1081)
T KOG1538|consen 88 LKY-------------------------SHNDAIQCMSFNPITHQLASCSLS-DFGL--WSPEQKSV------------- 126 (1081)
T ss_pred eee-------------------------ccCCeeeEeecCchHHHhhhcchh-hccc--cChhhhhH-------------
Confidence 111 111123333322 2333333211 1111 33221110
Q ss_pred ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----c
Q 005459 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----L 254 (696)
Q Consensus 180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~ 254 (696)
..+++.++.. .++++.||++++.+-.++|+.+-+....++. .
T Consensus 127 -------------------------~K~kss~R~~--------~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 127 -------------------------SKHKSSSRII--------CCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred -------------------------HhhhhheeEE--------EeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCC
Confidence 0112222222 2668999999999999999988764322221 3
Q ss_pred CCCCeEE-EEEcCC-----CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 255 GSGDAVC-ASIAPE-----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 255 ~~~~~v~-v~~sp~-----~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
|.+.++. ++|+|. ...+|+..++.++..|.++ ++.+..-+. -.-.-.|+.+.|+|.++..|+.|
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G~~Igk~r~--------L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--GKQIGKDRA--------LNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--ceeeccccc--------CCCCchhheeccCCcEEEEccCC
Confidence 4567777 999995 3578888999999999886 344432222 12235789999999999999999
Q ss_pred CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459 329 RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (696)
+.++++.-.| -.+.|+.+. ...|++++..|++ +..+-|+ ++..++
T Consensus 244 k~L~~fTR~G-vrLGTvg~~-D~WIWtV~~~PNs----Q~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDG-VRLGTVGEQ-DSWIWTVQAKPNS----QYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecC-eEEeecccc-ceeEEEEEEccCC----ceEEEEEccCeeehhh
Confidence 9999997554 456677665 6789999999998 6666554 444444
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=3.7e-14 Score=148.53 Aligned_cols=266 Identities=16% Similarity=0.265 Sum_probs=188.9
Q ss_pred eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.+. ++|-|||..|+.+. +..+.+||.++ +..++++++ |+..|.|++||.||+.+|||+.|+.|.+|+..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~nd-G~llqtLKg--------HKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSD-GTLLQPLKG--------HKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCC-ccccccccc--------ccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 566 99999999988865 55789999998 899999999 99999999999999999999999999999864
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSG 412 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~ 412 (696)
- ...|+-.|.+.|.+..|.|-. +.++|.+ .-.+|+++....... ....++..-++ |..++-|-.+|
T Consensus 84 l---EG~LkYSH~D~IQCMsFNP~~----h~LasCsLsdFglWS~~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nG 154 (1081)
T KOG1538|consen 84 L---EGILKYSHNDAIQCMSFNPIT----HQLASCSLSDFGLWSPEQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNG 154 (1081)
T ss_pred c---cceeeeccCCeeeEeecCchH----HHhhhcchhhccccChhhhhHHhh--hhheeEEEeeecCCCcEEEEeccCc
Confidence 3 334554447889999999987 7788776 556788765432211 12345555555 88899999999
Q ss_pred CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-----CEEEEEeCCccE-EEEccCCceE
Q 005459 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-----MFLAVAGLHGLI-LYDIRQKKWR 486 (696)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-----~~la~ag~dG~i-~w~~~sg~w~ 486 (696)
++.+++ ..++.++.+- .-.+.|.||.+++|+|.. ..+|++.-..+. .|.+...
T Consensus 155 TIsiRN-k~gEek~~I~-----------------Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--- 213 (1081)
T KOG1538|consen 155 TISIRN-KNGEEKVKIE-----------------RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--- 213 (1081)
T ss_pred eEEeec-CCCCcceEEe-----------------CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce---
Confidence 999886 3344433211 123678999999999963 368888888888 7766442
Q ss_pred ecCCccceeeeE--EEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCccEEEEccCCEEEEEEcCc
Q 005459 487 VFGDITQEQKIQ--SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYRPF 563 (696)
Q Consensus 487 ~f~~~~~e~~~~--v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~d~ 563 (696)
..+. ...-+|. |..-+-.+.+++++ +.+..|.+|.|+...-..+.. -+.+- .+.+-|++.+..++|-|+
T Consensus 214 ~Igk-~r~L~FdP~CisYf~NGEy~LiG-----Gsdk~L~~fTR~GvrLGTvg~~D~WIW--tV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 214 QIGK-DRALNFDPCCISYFTNGEYILLG-----GSDKQLSLFTRDGVRLGTVGEQDSWIW--TVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred eecc-cccCCCCchhheeccCCcEEEEc-----cCCCceEEEeecCeEEeeccccceeEE--EEEEccCCceEEEEEccC
Confidence 1221 1111233 33444467888887 345789999997211111221 11122 367778999999999999
Q ss_pred eEEEEEEEE
Q 005459 564 DVHIFHVKL 572 (696)
Q Consensus 564 ~~~l~~~~~ 572 (696)
++.-|++..
T Consensus 286 TiACyNl~f 294 (1081)
T KOG1538|consen 286 TIACYNLIF 294 (1081)
T ss_pred eeehhhhHH
Confidence 999997654
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.57 E-value=8.2e-14 Score=140.84 Aligned_cols=276 Identities=14% Similarity=0.166 Sum_probs=174.5
Q ss_pred CCCeE-EEEEcCCC--cEEEEEecCCeEEEEEccCCC---ceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC
Q 005459 256 SGDAV-CASIAPEQ--QILAVGTRRGVVELYDLAESA---SLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS 328 (696)
Q Consensus 256 ~~~~v-~v~~sp~~--~~la~g~~dg~v~vw~~~~~~---~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D 328 (696)
+...+ +++|+|.. +++|+|..-|+|-+||+++.. .-+..+.. |.++|.+|.|+| +-..+.+.+.|
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~--------hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP--------HSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc--------CCccccceEecCCChhheeeeccC
Confidence 34444 59999953 699999999999999996311 23444555 999999999999 55688899999
Q ss_pred CcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceE-EEEecCCcceE--EEEe
Q 005459 329 RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRL-YAIEEGSSERV--LIFS 400 (696)
Q Consensus 329 g~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l-~~~~~~~~~~v--~~~~ 400 (696)
|+|++=|+.+... +.++... ...+.+..|+... ..++.|. ..-+||.+...- .....-|..+| +.+.
T Consensus 257 GtiR~~D~~~~i~e~v~s~~~d-~~~fs~~d~~~e~----~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 257 GTIRLQDFEGNISEEVLSLDTD-NIWFSSLDFSAES----RSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred ceeeeeeecchhhHHHhhcCcc-ceeeeeccccCCC----ccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999999987642 2222211 2345556665554 3334333 334566643221 22233456677 6666
Q ss_pred c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecCCCceEEEEEcCCCCEEEEEeCCccE-
Q 005459 401 F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWPVQHVAASKDGMFLAVAGLHGLI- 476 (696)
Q Consensus 401 ~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~I~~va~s~dG~~la~ag~dG~i- 476 (696)
| -..++|++.|++.++||+.+-..+- -| .....|.-+|.++.|||+|-.|++.+.|..|
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~-----------------sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKA-----------------SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCC-----------------CcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 6 6679999999999999997765531 02 1234788899999999999889999999999
Q ss_pred EEEcc--CCceEecCCccceeee----EEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCCCccceeEE------eec
Q 005459 477 LYDIR--QKKWRVFGDITQEQKI----QSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHLDQSSLLCR------KSL 542 (696)
Q Consensus 477 ~w~~~--sg~w~~f~~~~~e~~~----~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~------~~~ 542 (696)
+||.. +.+-.......|.+.. ....-.|.++ +++++.|. ..|-||+-. ...+.+. ..+
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~-----r~IDv~~~~---~~q~v~el~~P~~~tI 466 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYP-----RPIDVFDGN---GGQMVCELHDPESSTI 466 (498)
T ss_pred EeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccC-----cceeEEcCC---CCEEeeeccCcccccc
Confidence 99984 1111111111122111 1224566544 45555332 458888775 1111111 123
Q ss_pred CCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 543 LAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 543 ~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
++ +..+.|.++.++.++ +....+|-+.
T Consensus 467 ~~-vn~~HP~~~~~~aG~-~s~Gki~vft 493 (498)
T KOG4328|consen 467 PS-VNEFHPMRDTLAAGG-NSSGKIYVFT 493 (498)
T ss_pred cc-ceeecccccceeccC-CccceEEEEe
Confidence 33 567788888888844 3455566444
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.57 E-value=1.1e-12 Score=130.93 Aligned_cols=134 Identities=16% Similarity=0.278 Sum_probs=108.2
Q ss_pred EEeCCc-EEEEeeccCCceeeeeeecce------------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC---
Q 005459 226 LYSNGQ-LMSCSVSKKGLKLAEFIKIDK------------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES--- 288 (696)
Q Consensus 226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~~------------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~--- 288 (696)
|..++. .+++++.|..+++|.....+. +..|..++. +.|+|+|.+||+|+.+|+|.+|...+.
T Consensus 21 fq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~ 100 (434)
T KOG1009|consen 21 FQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF 100 (434)
T ss_pred eccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc
Confidence 444444 889999999999998764321 146888888 999999999999999999999987620
Q ss_pred ---C---------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459 289 ---A---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (696)
Q Consensus 289 ---~---------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~ 356 (696)
. ...+.+.+ |...|..++|+||++.+++|+.|+.+++||+..+.+.+.+.+| ...|+.+
T Consensus 101 ~~d~e~~~~ke~w~v~k~lr~--------h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh-~~yvqgv 171 (434)
T KOG1009|consen 101 DADTEADLNKEKWVVKKVLRG--------HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH-EHYVQGV 171 (434)
T ss_pred cccchhhhCccceEEEEEecc--------cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc-cccccee
Confidence 0 11223344 9999999999999999999999999999999999999999888 7778888
Q ss_pred cccCCCCCCccceecc
Q 005459 357 IVKPNQDCKYEPLMSG 372 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg 372 (696)
+++|-. +++++-
T Consensus 172 awDpl~----qyv~s~ 183 (434)
T KOG1009|consen 172 AWDPLN----QYVASK 183 (434)
T ss_pred ecchhh----hhhhhh
Confidence 888876 665543
No 154
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=8.3e-14 Score=140.42 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=162.6
Q ss_pred CCcEEEEeeccCCceeeeeee-----ccee-------------------cCCCCeEE-EEEcCC-CcEEEEEecCCeEEE
Q 005459 229 NGQLMSCSVSKKGLKLAEFIK-----IDKE-------------------LGSGDAVC-ASIAPE-QQILAVGTRRGVVEL 282 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~-----~~~~-------------------~~~~~~v~-v~~sp~-~~~la~g~~dg~v~v 282 (696)
-|++++++.-+..|.+||+.- |... .+|++++- ++||-. .+.||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 477888888888999998641 1000 36888887 888886 468999999999999
Q ss_pred EEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCe---eEEEeecccccceecccc
Q 005459 283 YDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR---LMSTIRQISLSSISSPIV 358 (696)
Q Consensus 283 w~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~---~~~~l~~~~~~~v~~~~~ 358 (696)
||+++ +++..++.. |.+.|.+++|.| ....|.+|+.|++|++.|..... ....+ .+.|-.+++
T Consensus 271 WD~~~-g~p~~s~~~--------~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g~VEkv~w 337 (463)
T KOG0270|consen 271 WDVDT-GKPKSSITH--------HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DGEVEKVAW 337 (463)
T ss_pred EEcCC-CCcceehhh--------cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe----ccceEEEEe
Confidence 99999 888888887 999999999999 68899999999999999987321 11222 234777778
Q ss_pred cCCCCCCccceecce---eeEEEcCCCc-eEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEe
Q 005459 359 KPNQDCKYEPLMSGT---SMMQWDEYGY-RLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQ 430 (696)
Q Consensus 359 sp~~~~~~~~l~sg~---~~~~W~~~~~-~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~ 430 (696)
.|... ..++.+. +++-.|.+.. +++.+...|.+.|-.+++ ...++|++.|+++++|++.-...+....+
T Consensus 338 ~~~se---~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 338 DPHSE---NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred cCCCc---eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 77652 3344442 7777888754 888889999999955555 55688999999999999876554310000
Q ss_pred cCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCC
Q 005459 431 SEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 431 ~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg 483 (696)
.+. -+...|.++.|+-- .+|.||..+.+ +||+.+.
T Consensus 415 ----------------~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 415 ----------------SFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ----------------ccc--ccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 000 11255667777654 68889999977 9998765
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.55 E-value=7.4e-14 Score=140.77 Aligned_cols=230 Identities=13% Similarity=0.208 Sum_probs=159.2
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeec----------c-CC-CCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEE
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLY----------D-WG-YSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTV 333 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~----------~-~~-~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~v 333 (696)
.|+++|+|+.|-.|.|||++--....+.+... . .. ...+|+..|.+|+|.-+ -+.||||+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 47899999999999999987522222211110 0 01 12369999999999875 458999999999999
Q ss_pred EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC----ceEEEEecCCcceEEEEec--cee
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG----YRLYAIEEGSSERVLIFSF--GKC 404 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~----~~l~~~~~~~~~~v~~~~~--~~~ 404 (696)
||+.++++..++..| ...|+++.|+|..+ +.+++|+ ++.+.|.+. +.-|.. .+.-.+ +.+.+ -..
T Consensus 271 WD~~~g~p~~s~~~~-~k~Vq~l~wh~~~p---~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-~g~VEk-v~w~~~se~~ 344 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHH-GKKVQTLEWHPYEP---SVLLSGSYDGTVALKDCRDPSNSGKEWKF-DGEVEK-VAWDPHSENS 344 (463)
T ss_pred EEcCCCCcceehhhc-CCceeEEEecCCCc---eEEEeccccceEEeeeccCccccCceEEe-ccceEE-EEecCCCcee
Confidence 999999999999966 67899999999864 7788888 777777652 222222 232222 34444 556
Q ss_pred eeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccC
Q 005459 405 CLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 405 ~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~s 482 (696)
++.+..||+++-.|+.+.++ ..-+..+|+.+|.++++++.-. +++++|.|+.+ +|++..
T Consensus 345 f~~~tddG~v~~~D~R~~~~-------------------~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPGK-------------------PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred EEEecCCceEEeeecCCCCC-------------------ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecC
Confidence 77788999999999887765 2456789999999999998654 68999999999 999865
Q ss_pred CceEecCCccceeeeEEE---eEeeeCc--EEEEEEeecCCCeEEEEEeeCC
Q 005459 483 KKWRVFGDITQEQKIQSK---GLLWLGK--IIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 483 g~w~~f~~~~~e~~~~v~---~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
..=+. ..+++|.++ +++-..+ +.++. ......+|+|+..
T Consensus 406 ~~~~~----v~~~~~~~~rl~c~~~~~~~a~~la~----GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 406 DSPKS----VKEHSFKLGRLHCFALDPDVAFTLAF----GGEKAVLRVWDIF 449 (463)
T ss_pred CCCcc----cccccccccceeecccCCCcceEEEe----cCccceEEEeecc
Confidence 44222 234555433 2222222 23322 1222479999874
No 156
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=136.34 Aligned_cols=119 Identities=17% Similarity=0.309 Sum_probs=97.7
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEec
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~ 276 (696)
++..|...|-++.|+|. ...++++++-|+++++||.+.+++. ..|..-|. ++||.+..+||+|+.
T Consensus 252 Pf~gH~~SVEDLqWSpt---------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 252 PFTGHTKSVEDLQWSPT---------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cccccccchhhhccCCc---------cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 34456667778887663 3346778889999999999876332 56777788 999999999999999
Q ss_pred CCeEEEEEccCC--CceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccC
Q 005459 277 RGVVELYDLAES--ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 277 dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~ 338 (696)
||+++|||++.- ++++.+++- |+.+|++|.|+| +...||+++.|..|.+||+.-
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~--------Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKY--------HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEe--------ccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 999999999862 466778888 999999999999 667899999999999999854
No 157
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.54 E-value=2.8e-13 Score=131.33 Aligned_cols=255 Identities=16% Similarity=0.245 Sum_probs=175.8
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeec-------cee--c-------CCCCeEE--EEE------cCCCcEEEEEecCCe
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKI-------DKE--L-------GSGDAVC--ASI------APEQQILAVGTRRGV 279 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~-------~~~--~-------~~~~~v~--v~~------sp~~~~la~g~~dg~ 279 (696)
+-++|||..+++.+.|..+++|++... ... . .....+. +.+ -|+-.++|+.+.|.-
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~P 134 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQP 134 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCc
Confidence 457899999999999999999986521 000 0 0112232 333 367899999999999
Q ss_pred EEEEEccCCCceeeEEeeccCCCCCCCCCC---eEEEEECCCCCeEEEEEcCCcEEEEEcc-CCe---eEEEeec--cc-
Q 005459 280 VELYDLAESASLIRTVSLYDWGYSMDDTGP---VSCIAWTPDNSAFAVGWKSRGLTVWSVS-GCR---LMSTIRQ--IS- 349 (696)
Q Consensus 280 v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~---V~~l~~spdg~~lasg~~Dg~v~vW~~~-~~~---~~~~l~~--~~- 349 (696)
|++||.-+ +++....++.+ |... -.+|+|||||..|++|.. +.|+++|+. .++ ...++.. .+
T Consensus 135 Ih~wdaft-G~lraSy~~yd------h~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 135 IHLWDAFT-GKLRASYRAYD------HQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred eeeeeccc-cccccchhhhh------hHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccc
Confidence 99999988 77776666644 5444 458999999999999987 899999993 222 2222221 11
Q ss_pred ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccC-CCCceeeeeeec
Q 005459 350 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGV-SGMTYARQVIYG 422 (696)
Q Consensus 350 ~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~-d~~~~~w~~~~~ 422 (696)
.+-+++.+|+|... ..++.|+ +.-++.-.+.+++.++.+|.+.|..+.+ +..+.+|.. |..+..||+.+.
T Consensus 207 ~giisc~a~sP~~~---~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 207 KGIISCFAFSPMDS---KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred cceeeeeeccCCCC---cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 34478889999862 4556555 5566666678888888899999966665 778888775 668889999887
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeeecC----CCceEEEEEcCCCCEEEEEeCCccE-EEEccC-CceEecCCccceee
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYISQ----NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ-KKWRVFGDITQEQK 496 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~----~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s-g~w~~f~~~~~e~~ 496 (696)
.+-+ -.+..| |-.|. ..+.|+|++||+|+.||.| +||.+. |.|..- .+..+
T Consensus 284 ~~pv-------------------~~L~rhv~~TNQRI~-FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv---~~~~s 340 (406)
T KOG2919|consen 284 RDPV-------------------YALERHVGDTNQRIL-FDLDPKGEILASGDTDGSVRVWDLKDLGNEVSV---TGNYS 340 (406)
T ss_pred cchh-------------------hhhhhhccCccceEE-EecCCCCceeeccCCCccEEEEecCCCCCcccc---ccccc
Confidence 7622 122223 22332 3567999999999999999 999987 554321 12233
Q ss_pred eEEEeEeeeCcEEEEE
Q 005459 497 IQSKGLLWLGKIIVVC 512 (696)
Q Consensus 497 ~~v~~~~w~~~~lv~~ 512 (696)
-.|.++..++-+-+.|
T Consensus 341 d~vNgvslnP~mpila 356 (406)
T KOG2919|consen 341 DTVNGVSLNPIMPILA 356 (406)
T ss_pred ccccceecCcccceee
Confidence 3466888777654444
No 158
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.6e-13 Score=135.46 Aligned_cols=206 Identities=17% Similarity=0.230 Sum_probs=133.1
Q ss_pred CCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+.+.+++|+.||+.+|+. +|++++||+. |... ...+..++++++.++.|||||+.||+.+.| ..+||+++.
T Consensus 145 g~~k~vaf~~~gs~latgg~dg~lRv~~~--Ps~~-----t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 145 GQQKVVAFNGDGSKLATGGTDGTLRVWEW--PSML-----TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred CcceEEEEcCCCCEeeeccccceEEEEec--Ccch-----hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 567889999999999998 6889999997 3221 122334678999999999999999999999 899999986
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
+..-.. ..+. +.++++..+.
T Consensus 217 g~~~a~---~t~~-----------------------------~k~~~~~~cR---------------------------- 236 (398)
T KOG0771|consen 217 GAALAR---KTPF-----------------------------SKDEMFSSCR---------------------------- 236 (398)
T ss_pred Cchhhh---cCCc-----------------------------ccchhhhhce----------------------------
Confidence 632110 0000 0111111110
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee----eecceec
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF----IKIDKEL 254 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~----~~~~~~~ 254 (696)
|+.|+. + ... ..++.-.|-|.+.. .+ +.+|+. ...+...
T Consensus 237 -----F~~d~~------------------~-~~l--------~laa~~~~~~~v~~---~~--~~~w~~~~~l~~~~~~~ 279 (398)
T KOG0771|consen 237 -----FSVDNA------------------Q-ETL--------RLAASQFPGGGVRL---CD--ISLWSGSNFLRLRKKIK 279 (398)
T ss_pred -----ecccCC------------------C-ceE--------EEEEecCCCCceeE---EE--eeeeccccccchhhhhh
Confidence 000000 0 000 00000111111111 01 112222 1112224
Q ss_pred CCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 255 GSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 255 ~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
.++...++++|+||+++|.|+.||.|.+|+..+ .+..+-.+. .|.+.|+.+.|+||.+++++-+.|.+.+|-
T Consensus 280 ~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~-lq~~~~vk~-------aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 280 RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKS-LQRLQYVKE-------AHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred ccCcceeEEEcCCCcEEEEeccCCcEEEEEece-eeeeEeehh-------hheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 456667799999999999999999999999887 555554443 499999999999999999999999999998
Q ss_pred EccC
Q 005459 335 SVSG 338 (696)
Q Consensus 335 ~~~~ 338 (696)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 8765
No 159
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.2e-13 Score=137.01 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=129.4
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
-+++|+++|+.||+|+.||++|||++.. ...+..... |.+.|.+|.|||||+.|++-+.| ..+||++.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~--------~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIA--------HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHh--------hcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 4599999999999999999999999776 455555555 89999999999999999999999 9999999998
Q ss_pred eeEEEeec-ccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeee
Q 005459 340 RLMSTIRQ-ISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ 418 (696)
Q Consensus 340 ~~~~~l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~ 418 (696)
..+.++.. .....+..+.|+.+++. + +..+... ..+.+.++.++
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~--~--------------~l~laa~-------------------~~~~~~v~~~~ 262 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQ--E--------------TLRLAAS-------------------QFPGGGVRLCD 262 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCC--c--------------eEEEEEe-------------------cCCCCceeEEE
Confidence 66655542 21223445555544311 0 0011111 11112222222
Q ss_pred eeecCC-eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceee
Q 005459 419 VIYGED-RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQK 496 (696)
Q Consensus 419 ~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~ 496 (696)
+..-.. .+ . ...+.......|.++++|+||+++|.|+.||.| +|+..+-+--.+-. +.+.
T Consensus 263 ~~~w~~~~~---------------l-~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk--~aH~ 324 (398)
T KOG0771|consen 263 ISLWSGSNF---------------L-RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVK--EAHL 324 (398)
T ss_pred eeeeccccc---------------c-chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeeh--hhhe
Confidence 111000 00 0 011122234469999999999999999999999 99987765433333 3445
Q ss_pred eEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459 497 IQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 497 ~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
+.|+++.+.++.-..+. -+.+.+.++...
T Consensus 325 ~~VT~ltF~Pdsr~~~s---vSs~~~~~v~~l 353 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLAS---VSSDNEAAVTKL 353 (398)
T ss_pred eeeeeEEEcCCcCcccc---cccCCceeEEEE
Confidence 57888888765443331 133456666655
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=1.9e-10 Score=123.86 Aligned_cols=354 Identities=22% Similarity=0.291 Sum_probs=222.1
Q ss_pred CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEE-cCCCc-EEEEEec-CcEEEEEEE
Q 005459 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVW-SPDTK-LIAVVTS-SLYLHIFKV 96 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~w-sPDg~-~lav~t~-dg~l~l~~l 96 (696)
....+.|++++..++..+ +..+.+|+...+...+..+..... ..+..+.+ +||+. .++..+. ++.+++|++
T Consensus 67 ~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 141 (466)
T COG2319 67 SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHD-----SSVSKLALSSPDGNSILLASSSLDGTVKLWDL 141 (466)
T ss_pred eEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCC-----CceeeEEEECCCcceEEeccCCCCccEEEEEe
Confidence 344467899999888775 889999998744313333322111 24455555 99998 5555555 899999999
Q ss_pred Ee-cCcccccCCCCCCCceeeeeeEEEeeecccccccee--EEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccC
Q 005459 97 QI-TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLS--VSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHS 172 (696)
Q Consensus 97 ~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~ 172 (696)
.. ...... +..+... ..++.+++..++.+.. ++.+..|+-. ......
T Consensus 142 ~~~~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---- 192 (466)
T COG2319 142 STPGKLIRT-----------------------LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR--TGKPLS---- 192 (466)
T ss_pred cCCCeEEEE-----------------------EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC--CCceEE----
Confidence 75 111000 1111122 3355666666777764 8888774433 211110
Q ss_pred CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecc
Q 005459 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID 251 (696)
Q Consensus 173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~ 251 (696)
....+...+..++ +.|+|+ .++..+.|+++++|+...+.
T Consensus 193 ------------------------------~~~~~~~~v~~~~----------~~~~~~~~~~~~~~d~~i~~wd~~~~~ 232 (466)
T COG2319 193 ------------------------------TLAGHTDPVSSLA----------FSPDGGLLIASGSSDGTIRLWDLSTGK 232 (466)
T ss_pred ------------------------------eeccCCCceEEEE----------EcCCcceEEEEecCCCcEEEEECCCCc
Confidence 0111344465555 446776 44444778888888655332
Q ss_pred e----ecCCCCeEEE-EEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE
Q 005459 252 K----ELGSGDAVCA-SIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 252 ~----~~~~~~~v~v-~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
. +.+|.... + .|+|++.++++++.|+.+++|++.........+.. |...|.++.|+|++..+++++
T Consensus 233 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 233 LLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG--------HSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEec--------CCccEEEEEECCCCCEEEEee
Confidence 2 34566554 4 79999999999999999999999873332343434 899999999999999999999
Q ss_pred cCCcEEEEEccCCeeEEEee--cccccceecccccCCCCCCccceecc----eeeEEEcCCCceEEEEecCCcc-eEEEE
Q 005459 327 KSRGLTVWSVSGCRLMSTIR--QISLSSISSPIVKPNQDCKYEPLMSG----TSMMQWDEYGYRLYAIEEGSSE-RVLIF 399 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~--~~~~~~v~~~~~sp~~~~~~~~l~sg----~~~~~W~~~~~~l~~~~~~~~~-~v~~~ 399 (696)
.|+.+++|+..+........ .| ...+..+.+.+++ ..+..+ ..+..|+............... ..+.+
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGH-EGPVSSLSFSPDG----SLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSF 378 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeeccc-CCceEEEEECCCC----CEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEE
Confidence 99889999998887766665 45 4457777773221 222222 2455588876662222222221 11333
Q ss_pred ecceeee-eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-E
Q 005459 400 SFGKCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-L 477 (696)
Q Consensus 400 ~~~~~~~-s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~ 477 (696)
....... .+..++.+.+|+....... .....+...+....+++++.+++.++.++.+ .
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (466)
T COG2319 379 SPDGRVVSSGSTDGTVRLWDLSTGSLL--------------------RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRL 438 (466)
T ss_pred CCCCCEEEEecCCCceEEEecccCeee--------------------eeccCCCCcEEEEEECCCCcEEEEecCCCcEEE
Confidence 2211122 2567788888887655542 1111221679999999999999999999999 9
Q ss_pred EEccC
Q 005459 478 YDIRQ 482 (696)
Q Consensus 478 w~~~s 482 (696)
|+..+
T Consensus 439 ~~~~~ 443 (466)
T COG2319 439 WDLKT 443 (466)
T ss_pred EeccC
Confidence 99887
No 161
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=1.2e-13 Score=143.05 Aligned_cols=250 Identities=15% Similarity=0.262 Sum_probs=173.6
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccC---C----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAE---S----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~---~----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg 325 (696)
..|.+.+. .+|.|-...|++++.||++++|++.. . .+++.++.+ |.|+|.|++.++.|..+.+|
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra--------H~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA--------HEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec--------ccCceEEEEecCCceEEEee
Confidence 56888888 99999999999999999999999932 1 246778888 99999999999999999999
Q ss_pred EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec---c
Q 005459 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---G 402 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~ 402 (696)
+-||+|+.|++.-.. .|++ .+++.+ +...+.||.+.+|.+.+ .
T Consensus 363 g~Dg~I~~w~~p~n~------------------dp~d--s~dp~v--------------l~~~l~Ghtdavw~l~~s~~~ 408 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQ------------------DPDD--SYDPSV--------------LSGTLLGHTDAVWLLALSSTK 408 (577)
T ss_pred ccCceeeeeccCCCC------------------Cccc--ccCcch--------------hccceeccccceeeeeecccc
Confidence 999999999987221 1222 111111 22344578888865555 5
Q ss_pred eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee---cCCCceEEEEE-cCCCCEEEEEeCCccE-E
Q 005459 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI---SQNWPVQHVAA-SKDGMFLAVAGLHGLI-L 477 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~I~~va~-s~dG~~la~ag~dG~i-~ 477 (696)
..+++++.|++++.|....... .+|. .|..|. ++.+ +.+-....+..+-|.. +
T Consensus 409 ~~Llscs~DgTvr~w~~~~~~~---------------------~~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~ 466 (577)
T KOG0642|consen 409 DRLLSCSSDGTVRLWEPTEESP---------------------CTFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSI 466 (577)
T ss_pred cceeeecCCceEEeeccCCcCc---------------------cccCCccccCCcc-eEeeccchhHhhhhhcccccccc
Confidence 6699999999999999665443 2222 223332 2233 2222344455555666 7
Q ss_pred EEccCCc-eEecCCccceee---eEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCC--CCCccceeEEeecCCccEEE
Q 005459 478 YDIRQKK-WRVFGDITQEQK---IQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRY--HLDQSSLLCRKSLLAKPIVM 549 (696)
Q Consensus 478 w~~~sg~-w~~f~~~~~e~~---~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~--~l~~~~~~~~~~~~~~~l~~ 549 (696)
++...+. .++|.....-.. -.+..++|+++ +.+.+ ..++.||+|+.. .+..+...|...+.+ +++
T Consensus 467 ~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~-----hed~~Ir~~dn~~~~~l~s~~a~~~svts--lai 539 (577)
T KOG0642|consen 467 DDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTA-----HEDRSIRFFDNKTGKILHSMVAHKDSVTS--LAI 539 (577)
T ss_pred hhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEec-----ccCCceecccccccccchheeeccceecc--eee
Confidence 7776653 334433221111 12345777754 44443 667899999885 566777888888887 999
Q ss_pred EccCCEEEEEEcCceEEEEEEEEec
Q 005459 550 DVYEDYILVTYRPFDVHIFHVKLFG 574 (696)
Q Consensus 550 ~~~~~~llv~~~d~~~~l~~~~~~~ 574 (696)
.++|-+|+.+..|+.+++|+++.+.
T Consensus 540 ~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 540 DPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCCCceEEeecCCceeehhhccchh
Confidence 9999999999999999999987643
No 162
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.2e-13 Score=138.96 Aligned_cols=317 Identities=15% Similarity=0.177 Sum_probs=186.3
Q ss_pred CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCc--EEEEEecCcEEEEEEEE
Q 005459 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTK--LIAVVTSSLYLHIFKVQ 97 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~--~lav~t~dg~l~l~~l~ 97 (696)
.++-|...|.|..||+++ |++|+||.+. ++..+... .-.+.+.+++|.|.+. .||++.... +.|-+..
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~-TgRcvr~~-------~~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~ 472 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIA-TGRCVRTV-------QFDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPI 472 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEee-cceEEEEE-------eecceeEEEEecCCCCceeEEEEecCc-eEEeCcc
Confidence 444466677799999996 6799999996 54433322 2346889999999887 567766555 6666666
Q ss_pred ecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCc
Q 005459 98 ITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSS 177 (696)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~ 177 (696)
++......... ..+. +.. . .. ..++.+. .|......+...
T Consensus 473 ~G~~~e~~~t~----ell~------~~~----~----------~~------~p~~~~~--~W~~~~~~e~~~-------- 512 (733)
T KOG0650|consen 473 FGDRLEVGPTK----ELLA------SAP----N----------ES------EPDAAVV--TWSRASLDELEK-------- 512 (733)
T ss_pred ccchhhhcchh----hhhh------cCC----C----------cc------CCcccce--eechhhhhhhcc--------
Confidence 55321000000 0000 000 0 00 0112222 244322111100
Q ss_pred ccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce---e-
Q 005459 178 VAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK---E- 253 (696)
Q Consensus 178 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~---~- 253 (696)
.++ ....+...|++|+|+.....++.+.+++- ...+-+.++..... +
T Consensus 513 ~v~----------------------~~I~~~k~i~~vtWHrkGDYlatV~~~~~-------~~~VliHQLSK~~sQ~PF~ 563 (733)
T KOG0650|consen 513 GVC----------------------IVIKHPKSIRQVTWHRKGDYLATVMPDSG-------NKSVLIHQLSKRKSQSPFR 563 (733)
T ss_pred ceE----------------------EEEecCCccceeeeecCCceEEEeccCCC-------cceEEEEecccccccCchh
Confidence 000 01123455778887666665555555442 11122333332211 1
Q ss_pred cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 254 LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 254 ~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
..+....++.|+|...+|.++++ ..|++||+.. ..+++.+.. -...|.+|+.+|.|.-|+.|+.|+.+..
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~k-qelvKkL~t--------g~kwiS~msihp~GDnli~gs~d~k~~W 633 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSK-QELVKKLLT--------GSKWISSMSIHPNGDNLILGSYDKKMCW 633 (733)
T ss_pred hcCCceeEEEecCCCceEEEEec-cceEEEehhH-HHHHHHHhc--------CCeeeeeeeecCCCCeEEEecCCCeeEE
Confidence 23345567999999999988876 5899999987 666665554 4556999999999999999999999999
Q ss_pred EEccC-CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCC
Q 005459 334 WSVSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSG 412 (696)
Q Consensus 334 W~~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~ 412 (696)
+|+.- .+...+++.| ...+.+++|++.- .++++ ++.|+
T Consensus 634 fDldlsskPyk~lr~H-~~avr~Va~H~ry----PLfas------------------------------------~sdDg 672 (733)
T KOG0650|consen 634 FDLDLSSKPYKTLRLH-EKAVRSVAFHKRY----PLFAS------------------------------------GSDDG 672 (733)
T ss_pred EEcccCcchhHHhhhh-hhhhhhhhhcccc----ceeee------------------------------------ecCCC
Confidence 99853 3566777776 7778888887764 44443 33344
Q ss_pred CceeeeeeecCCeEEEEecCCCCcceeEEeecCe-eeecCC----CceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQN----WPVQHVAASKDGMFLAVAGLHGLI-LY 478 (696)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~----~~I~~va~s~dG~~la~ag~dG~i-~w 478 (696)
++.++.-.--.+ +.....-+|. .+.+|. ..|..+.|.|.--+|.+||.||++ +|
T Consensus 673 tv~Vfhg~VY~D------------l~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 673 TVIVFHGMVYND------------LLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cEEEEeeeeehh------------hhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 433321100000 0000001122 233453 348999999999999999999999 88
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=1.5e-12 Score=135.49 Aligned_cols=286 Identities=17% Similarity=0.223 Sum_probs=181.0
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCc
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRG 330 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~ 330 (696)
.||.+.+. +++.|.|.+||+|+.||+||||.+.+ +.+++++.. .+.|.|++|+|.+. .||++-.+.
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~---------d~~I~~vaw~P~~~~~vLAvA~~~~- 465 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQF---------DSEIRSVAWNPLSDLCVLAVAVGEC- 465 (733)
T ss_pred eccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEee---------cceeEEEEecCCCCceeEEEEecCc-
Confidence 68999988 99999999999999999999999999 899998886 56899999999665 666666644
Q ss_pred EEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecc-------eeeEEEcCCC----ceEEEEecCCcceEEE
Q 005459 331 LTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG-------TSMMQWDEYG----YRLYAIEEGSSERVLI 398 (696)
Q Consensus 331 v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg-------~~~~~W~~~~----~~l~~~~~~~~~~v~~ 398 (696)
+.+-+..-| ++.... ..+++.++ ..+..|.... ..-+.+.-.|...|.+
T Consensus 466 ~~ivnp~~G~~~e~~~-------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~ 526 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGP-------------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQ 526 (733)
T ss_pred eEEeCccccchhhhcc-------------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccce
Confidence 555554332 111000 00222222 1556786541 1112233345666755
Q ss_pred Eec---ceeeeeccCCCCc---eeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 399 FSF---GKCCLNRGVSGMT---YARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 399 ~~~---~~~~~s~~~d~~~---~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
+.. |.++++.+.++.. .++++..... ...|....+-|.++.|.|.-.++.+|+.
T Consensus 527 vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s--------------------Q~PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 527 VTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS--------------------QSPFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred eeeecCCceEEEeccCCCcceEEEEecccccc--------------------cCchhhcCCceeEEEecCCCceEEEEec
Confidence 555 8899998887644 3343332222 1234445567999999999999999999
Q ss_pred CccEEEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCC----ccceeEEeecCCcc
Q 005459 473 HGLILYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLD----QSSLLCRKSLLAKP 546 (696)
Q Consensus 473 dG~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~----~~~~~~~~~~~~~~ 546 (696)
....+||+..++. -....+...-+..|+-+ ++.||++. .+..+..|+.+ |. ....+|...+.+
T Consensus 587 ~~vRiYdL~kqel---vKkL~tg~kwiS~msihp~GDnli~gs-----~d~k~~WfDld-lsskPyk~lr~H~~avr~-- 655 (733)
T KOG0650|consen 587 RSVRIYDLSKQEL---VKKLLTGSKWISSMSIHPNGDNLILGS-----YDKKMCWFDLD-LSSKPYKTLRLHEKAVRS-- 655 (733)
T ss_pred cceEEEehhHHHH---HHHHhcCCeeeeeeeecCCCCeEEEec-----CCCeeEEEEcc-cCcchhHHhhhhhhhhhh--
Confidence 8888999977542 11112233345566665 58888873 44678888764 22 223456555555
Q ss_pred EEEEccCCEEEEEEcCceEEEEEEEEecccCCCCCCee-EeEE-----E-EEEeecccCCCCc
Q 005459 547 IVMDVYEDYILVTYRPFDVHIFHVKLFGELTPSTTPDL-QLST-----V-RELSIMTAKSHPA 602 (696)
Q Consensus 547 l~~~~~~~~llv~~~d~~~~l~~~~~~~~~~~~~~~~~-~~~~-----~-~~~~~~~~~~~p~ 602 (696)
+++...-..+++++.|+++.+|+=.+-.++ ..++.+ -+-+ + .++.+.....||.
T Consensus 656 Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl--~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 656 VAFHKRYPLFASGSDDGTVIVFHGMVYNDL--LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred hhhccccceeeeecCCCcEEEEeeeeehhh--hcCCceEeeeeccCceeecccceEeecccCC
Confidence 444433344556888899999987665543 122322 1111 1 2455677778887
No 164
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.50 E-value=5e-13 Score=132.08 Aligned_cols=200 Identities=15% Similarity=0.205 Sum_probs=151.0
Q ss_pred cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccCC---------------CceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459 254 LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAES---------------ASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~~---------------~~~~~~~~~~~~~~~~~h~g~V~~l~~ 315 (696)
..|.+.+. +..++- ..+.|+=+..|.|+||++... .+++.++.+ |.+.=..|+|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g--------hk~EGy~LdW 219 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG--------HKGEGYGLDW 219 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc--------cCccceeeec
Confidence 34556655 666654 456667778899999998641 123445555 9999999999
Q ss_pred CCC-CCeEEEEEcCCcEEEEEccCCee---EEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCc---eE
Q 005459 316 TPD-NSAFAVGWKSRGLTVWSVSGCRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY---RL 385 (696)
Q Consensus 316 spd-g~~lasg~~Dg~v~vW~~~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~---~l 385 (696)
||- -..|++|..-+.|.+|...++.- ...+.+| +.+|..+++||... ..++|++ ++++||.+.+ ..
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH-~~SVEDLqWSptE~---~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH-TKSVEDLQWSPTED---GVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCcccccc-ccchhhhccCCccC---ceEEeeecCceEEEEEecCCCccce
Confidence 992 22588888889999999877642 2344565 78899999999862 5566666 9999999876 34
Q ss_pred EEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC
Q 005459 386 YAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK 462 (696)
Q Consensus 386 ~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~ 462 (696)
+.+ +.|...|..+++ ...+++|+.||+.++||+.+-... +....|.-|+.||+++.|+|
T Consensus 296 ~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-----------------~pVA~fk~Hk~pItsieW~p 357 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-----------------QPVATFKYHKAPITSIEWHP 357 (440)
T ss_pred eEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC-----------------CcceeEEeccCCeeEEEecc
Confidence 444 788888888887 336899999999999999875542 23568899999999999998
Q ss_pred C-CCEEEEEeCCccE-EEEccCC
Q 005459 463 D-GMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 463 d-G~~la~ag~dG~i-~w~~~sg 483 (696)
. ...+|++|.|..+ +||+...
T Consensus 358 ~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 358 HEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCceEEeccCCCcEEEEEeecc
Confidence 5 4578889999999 9998764
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.50 E-value=5.5e-11 Score=125.66 Aligned_cols=233 Identities=13% Similarity=0.154 Sum_probs=133.7
Q ss_pred EccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEEecCcccccCCCCCCCcee
Q 005459 37 ASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (696)
Q Consensus 37 ~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~~~~~~~~~~~~~~~~~~~ 115 (696)
..+++|.+|+.. ....+....+ +...+....++++||+++|++++ .++.|.+|+++ +......
T Consensus 9 ~~~~~I~~~~~~-~~g~l~~~~~----~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~---------- 72 (330)
T PRK11028 9 PESQQIHVWNLN-HEGALTLLQV----VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTF---------- 72 (330)
T ss_pred CCCCCEEEEEEC-CCCceeeeeE----EecCCCCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEE----------
Confidence 357899999995 2222222221 22234556799999999988765 47889999986 2211100
Q ss_pred eeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (696)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~ 194 (696)
.......+ ...-.++.++++.++++.. ++.+..++.+........
T Consensus 73 -------~~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~-------------------------- 118 (330)
T PRK11028 73 -------AAESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP-------------------------- 118 (330)
T ss_pred -------eeeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc--------------------------
Confidence 01111111 1122356677888888764 677777655421100000
Q ss_pred CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee----------cCCCCeEEEE
Q 005459 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------LGSGDAVCAS 263 (696)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----------~~~~~~v~v~ 263 (696)
+..+... .....++++|||+.+++.. .++.+.+|+......+ .....+-.++
T Consensus 119 ----------------~~~~~~~-~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 119 ----------------IQIIEGL-EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred ----------------eeeccCC-CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE
Confidence 0000000 0112355789998776544 5688999988642211 1112334499
Q ss_pred EcCCCcEEEEEec-CCeEEEEEccCC-Cc--eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccC
Q 005459 264 IAPEQQILAVGTR-RGVVELYDLAES-AS--LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG 338 (696)
Q Consensus 264 ~sp~~~~la~g~~-dg~v~vw~~~~~-~~--~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~ 338 (696)
|+|+++++.++.. +++|.+|+++.. ++ .+.++.. .+....+......+.++|||++|+++.+ ++.|.+|++..
T Consensus 182 ~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 182 FHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM--MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec--CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 9999999988877 899999999842 22 2233322 1111112223457999999999998854 67888888743
No 166
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.49 E-value=4.8e-12 Score=130.12 Aligned_cols=125 Identities=18% Similarity=0.301 Sum_probs=95.0
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeec--ceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKI--DKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
.++|||.-+++.+.|+.+++|.-..- ..+.....++ |++|.|+.+-++. |..+.+.+=.+.. ...+-.++.
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~-n~k~i~WkA---- 184 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAA-NSKIIRWRA---- 184 (737)
T ss_pred ccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEE-ecCCeEEEeeccc-ccceeEEec----
Confidence 47899999999999999999984321 0112234455 5999999887766 4566777777665 344455777
Q ss_pred CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 302 YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
|.|-|.++.|+|....+++|++|-..++||.+|..+..+-. | ..++++++|.|+
T Consensus 185 ----HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~-~-ey~ITSva~npd 238 (737)
T KOG1524|consen 185 ----HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAA-E-EYAITSVAFNPE 238 (737)
T ss_pred ----cCcEEEEeecCccccceeecCCceeEEeecccCcccccCCh-h-ccceeeeeeccc
Confidence 99999999999999999999999999999999987664432 2 456777777776
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.49 E-value=8.4e-13 Score=138.49 Aligned_cols=239 Identities=14% Similarity=0.167 Sum_probs=155.9
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE--EeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcC
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT--VSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKS 328 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~--~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~D 328 (696)
+..|..++. +.|-|...+|++++-|.++++||+.. .++... +.+ |++.|.+++|.| |...|++|+.|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s~l~G~~~~~G--------H~~SvkS~cf~~~n~~vF~tGgRD 166 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-SRLVGGRLNLG--------HTGSVKSECFMPTNPAVFCTGGRD 166 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeecc-ceeecceeecc--------cccccchhhhccCCCcceeeccCC
Confidence 467999999 99999888999999999999999998 665544 555 999999999999 45588999999
Q ss_pred CcEEEEEccCCe--------------------eEEEe-------ecccccceec---ccccCCCCCCccceecce----e
Q 005459 329 RGLTVWSVSGCR--------------------LMSTI-------RQISLSSISS---PIVKPNQDCKYEPLMSGT----S 374 (696)
Q Consensus 329 g~v~vW~~~~~~--------------------~~~~l-------~~~~~~~v~~---~~~sp~~~~~~~~l~sg~----~ 374 (696)
|.+.|||+.-.. ....+ +.+ ...+.+ +.+..|. ..+++++ .
T Consensus 167 g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~-s~ti~ssvTvv~fkDe----~tlaSaga~D~~ 241 (720)
T KOG0321|consen 167 GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA-SNTIFSSVTVVLFKDE----STLASAGAADST 241 (720)
T ss_pred CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc-cCceeeeeEEEEEecc----ceeeeccCCCcc
Confidence 999999983221 00000 011 122222 2233343 5666655 8
Q ss_pred eEEEcCCCceEEEEec--------CC---cceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeE
Q 005459 375 MMQWDEYGYRLYAIEE--------GS---SERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKIL 440 (696)
Q Consensus 375 ~~~W~~~~~~l~~~~~--------~~---~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~ 440 (696)
+++||+.......... .| .-.+ +.++- |..+...|.|++|.+|++..-...
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s--------------- 306 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS--------------- 306 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC---------------
Confidence 9999997643322211 11 1122 33333 788888888999999998765543
Q ss_pred EeecCeeeecCC-Cce-EEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeeeC--cEEEEEEee
Q 005459 441 HLNLPVSYISQN-WPV-QHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLG--KIIVVCNYI 515 (696)
Q Consensus 441 ~~~~~~~~~~~~-~~I-~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~--~~lv~~~~~ 515 (696)
....|.++. ..+ ..-..||||.++++|+.|+.+ +|.+.+-.-..- ...-+.+.|..++|.. ..-|++|
T Consensus 307 ---P~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~--~l~Ght~eVt~V~w~pS~~t~v~Tc-- 379 (720)
T KOG0321|consen 307 ---PVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA--LLLGHTREVTTVRWLPSATTPVATC-- 379 (720)
T ss_pred ---chhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh--hhhCcceEEEEEeeccccCCCceee--
Confidence 112222321 111 124679999999999999999 999876432211 1112345688889963 3334444
Q ss_pred cCCCeEEEEEeeCC
Q 005459 516 DSSNTYELLFYPRY 529 (696)
Q Consensus 516 ~~~~~~~lr~y~~~ 529 (696)
+++..+++|...
T Consensus 380 --SdD~~~kiW~l~ 391 (720)
T KOG0321|consen 380 --SDDFRVKIWRLS 391 (720)
T ss_pred --ccCcceEEEecc
Confidence 455778888765
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.1e-11 Score=131.76 Aligned_cols=338 Identities=13% Similarity=0.141 Sum_probs=218.7
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS 102 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~ 102 (696)
..|.+++.|.++..+.+..+.+|++.++....+.+. ....+--..++.++||.++++|++-.||.|++|.--..+.
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~---~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~- 239 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRD---ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD- 239 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccch---hhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-
Confidence 346799999999999999999999964332222221 2222222257899999999999999999999997421000
Q ss_pred cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccc
Q 005459 103 IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALS 182 (696)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~ 182 (696)
.+-+..+++|....
T Consensus 240 -----------------------------------------------~~~t~t~lHWH~~~------------------- 253 (792)
T KOG1963|consen 240 -----------------------------------------------DSETCTLLHWHHDE------------------- 253 (792)
T ss_pred -----------------------------------------------ccccceEEEecccc-------------------
Confidence 00122334554211
Q ss_pred cccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeE
Q 005459 183 HHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAV 260 (696)
Q Consensus 183 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v 260 (696)
|.+ ++|++||..+++++..+.+-+|...++++. +--..++
T Consensus 254 ----------------------------V~~----------L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I 295 (792)
T KOG1963|consen 254 ----------------------------VNS----------LSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPI 295 (792)
T ss_pred ----------------------------cce----------eEEecCCceEeecccceEEEEEeecCCCcccccccCCee
Confidence 222 447888888888888888888888766532 3345566
Q ss_pred E-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC---CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 261 C-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS---MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 261 ~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~---~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
. +.+|||+.+.++.++|..|.+-...+ .....++.+..++.+ ....+-.+.++++|--+.++-.+..|.|..+|+
T Consensus 296 ~~i~vS~ds~~~sl~~~DNqI~li~~~d-l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl 374 (792)
T KOG1963|consen 296 LHIVVSPDSDLYSLVLEDNQIHLIKASD-LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDL 374 (792)
T ss_pred EEEEEcCCCCeEEEEecCceEEEEeccc-hhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEec
Confidence 6 99999999999999999999998866 555556666444321 224566788999996677777788899999999
Q ss_pred cCCeeEEEeec----cc------ccceecccccCCCCCCccceecc------------e-eeEEEcCCC----ceEEE-E
Q 005459 337 SGCRLMSTIRQ----IS------LSSISSPIVKPNQDCKYEPLMSG------------T-SMMQWDEYG----YRLYA-I 388 (696)
Q Consensus 337 ~~~~~~~~l~~----~~------~~~v~~~~~sp~~~~~~~~l~sg------------~-~~~~W~~~~----~~l~~-~ 388 (696)
.+...+..+.- +. .-.+++++.+..+ ..+++. - ..++|-... ..|.. +
T Consensus 375 ~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~g----s~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I 450 (792)
T KOG1963|consen 375 YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFG----SWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI 450 (792)
T ss_pred cccceeeeEEEEeecccCCcceeEEeeeeehhhccc----eEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence 87766554431 11 1234555555544 333222 1 677785432 22222 2
Q ss_pred ecCCcceE--EEEe-c--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCC
Q 005459 389 EEGSSERV--LIFS-F--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKD 463 (696)
Q Consensus 389 ~~~~~~~v--~~~~-~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~d 463 (696)
...|...+ .++. + ...+++++.|+.+++|.+...++. ...+..|....+ ..| |+.|+.+++||.|
T Consensus 451 ~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~-------~k~~s~W~c~~i-~sy--~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 451 NNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI-------YKKSSNWTCKAI-GSY--HKTPITALCFSQD 520 (792)
T ss_pred ecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc-------CcCccceEEeee-ecc--ccCcccchhhcCC
Confidence 24566555 3332 2 336899999999999997544331 011124532222 224 7889999999999
Q ss_pred CCEEEEEeCCccEEEEccCC
Q 005459 464 GMFLAVAGLHGLILYDIRQK 483 (696)
Q Consensus 464 G~~la~ag~dG~i~w~~~sg 483 (696)
|..||++-.+-..+||..+.
T Consensus 521 Gslla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GSLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred CcEEEEecCCEEEEecCCCh
Confidence 98887776544449999874
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.7e-13 Score=152.92 Aligned_cols=225 Identities=16% Similarity=0.181 Sum_probs=159.2
Q ss_pred EEEEEecCCeEEEEEccCC--C---ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEE
Q 005459 270 ILAVGTRRGVVELYDLAES--A---SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMS 343 (696)
Q Consensus 270 ~la~g~~dg~v~vw~~~~~--~---~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~ 343 (696)
+||.|++||.|.+||.... + ..+.+... |+|+|+.+.|+|.+. .||+|+.||.|.|||+..-..-.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~--------h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSK--------HTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcc--------cCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC
Confidence 5999999999999998751 1 23444455 999999999999655 99999999999999997644333
Q ss_pred Eee-cccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce----EEEEec--ceeeeeccCCC-
Q 005459 344 TIR-QISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VLIFSF--GKCCLNRGVSG- 412 (696)
Q Consensus 344 ~l~-~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~~~~~--~~~~~s~~~d~- 412 (696)
+.. ..-.+.|.+++|...- ...|++++ ...+||++..+.+..+..+..+ ++++++ ...++.++.|.
T Consensus 154 ~~~~~~~~~eI~~lsWNrkv---qhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~ 230 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRKV---SHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS 230 (1049)
T ss_pred CCCCCCCcccceEeccchhh---hHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC
Confidence 332 1124567888875543 15566666 7899999988777766555442 377777 55555555443
Q ss_pred --CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEec
Q 005459 413 --MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 413 --~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
.+.+||+..... ....|.+|+-.|.++.|++.+ ++|++.|+|+.+ +|+.++++- .
T Consensus 231 ~PviqlWDlR~ass-------------------P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--l 289 (1049)
T KOG0307|consen 231 APVIQLWDLRFASS-------------------PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--L 289 (1049)
T ss_pred CceeEeecccccCC-------------------chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--e
Confidence 678999888776 135677999999999999876 899999999999 999999852 2
Q ss_pred CCccceeeeEEEeEeeeCc--EEEEEEeecCCCeEEEEEeeCCCC
Q 005459 489 GDITQEQKIQSKGLLWLGK--IIVVCNYIDSSNTYELLFYPRYHL 531 (696)
Q Consensus 489 ~~~~~e~~~~v~~~~w~~~--~lv~~~~~~~~~~~~lr~y~~~~l 531 (696)
+...- +.-=|..+.|.+. .++++.+ -++.|.+|++..+
T Consensus 290 ~~~p~-~~nW~fdv~w~pr~P~~~A~as----fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 290 GELPA-QGNWCFDVQWCPRNPSVMAAAS----FDGKISIYSLQGT 329 (1049)
T ss_pred eecCC-CCcceeeeeecCCCcchhhhhe----eccceeeeeeecC
Confidence 21111 1111566788743 3444433 3468999998733
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.9e-12 Score=117.24 Aligned_cols=289 Identities=13% Similarity=0.057 Sum_probs=173.4
Q ss_pred cccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459 67 EGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll 146 (696)
+-.+.+-+|||-+++|+++..+|.|-++.+..-..... .++++ ..-++...+++++..+...++.++
T Consensus 10 ~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa----~~~gk---------~~iv~eqahdgpiy~~~f~d~~Ll 76 (325)
T KOG0649|consen 10 YNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA----EPPGK---------LKIVPEQAHDGPIYYLAFHDDFLL 76 (325)
T ss_pred HHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc----CCCCC---------cceeeccccCCCeeeeeeehhhee
Confidence 45566788999999999999999999999864322111 11110 111223678888988887766666
Q ss_pred EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (696)
Q Consensus 147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (696)
+|. ||.|+-|.|..+....- +++.= -..+|...+ ...--.|.. +++
T Consensus 77 s~g-dG~V~gw~W~E~~es~~---~K~lw---e~~~P~~~~-----------------~~evPeINa----------m~l 122 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLA---TKRLW---EVKIPMQVD-----------------AVEVPEINA----------MWL 122 (325)
T ss_pred ecc-CceEEEeeehhhhhhcc---chhhh---hhcCccccC-----------------cccCCccce----------eEe
Confidence 655 59999999986654210 01100 000000000 000111333 445
Q ss_pred EeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC-
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG- 301 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~- 301 (696)
.|...-++.++.|+.+..||+++++. ..||++-+. ++--.....|.+|++||++|+||.++ ++++..+...+.+
T Consensus 123 dP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt-~k~v~~ie~yk~~~ 201 (325)
T KOG0649|consen 123 DPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT-QKHVSMIEPYKNPN 201 (325)
T ss_pred ccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc-cceeEEeccccChh
Confidence 55544455556888889999988753 389999998 55545666788999999999999998 8888877765432
Q ss_pred CCCCCCCC-eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEE
Q 005459 302 YSMDDTGP-VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQW 378 (696)
Q Consensus 302 ~~~~h~g~-V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W 378 (696)
....|-|. |-+++-+. ..|+.|+. ..+.+|.+....+.+++.-. ..+..+.|..+ ..++.|- .+-.|
T Consensus 202 ~lRp~~g~wigala~~e--dWlvCGgG-p~lslwhLrsse~t~vfpip--a~v~~v~F~~d-----~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 202 LLRPDWGKWIGALAVNE--DWLVCGGG-PKLSLWHLRSSESTCVFPIP--ARVHLVDFVDD-----CVLIGGEGNHVQSY 271 (325)
T ss_pred hcCcccCceeEEEeccC--ceEEecCC-CceeEEeccCCCceEEEecc--cceeEeeeecc-----eEEEeccccceeee
Confidence 12224443 66666554 47777766 78999999988887777642 33555666443 2333331 55556
Q ss_pred cCCCceEEEEecCCcce----EEEEecceeeeeccCCCCc
Q 005459 379 DEYGYRLYAIEEGSSER----VLIFSFGKCCLNRGVSGMT 414 (696)
Q Consensus 379 ~~~~~~l~~~~~~~~~~----v~~~~~~~~~~s~~~d~~~ 414 (696)
... +.+-......... .+..+|-|.+..++.+..+
T Consensus 272 ~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~ 310 (325)
T KOG0649|consen 272 TLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKL 310 (325)
T ss_pred eec-cEEEEeccCCccceeeecccCCceEEEEecccceee
Confidence 543 3333333222211 2444455655555555444
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.47 E-value=1.9e-12 Score=126.05 Aligned_cols=239 Identities=13% Similarity=0.152 Sum_probs=161.1
Q ss_pred CCCCeEE-EEEcCC----CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcC
Q 005459 255 GSGDAVC-ASIAPE----QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKS 328 (696)
Q Consensus 255 ~~~~~v~-v~~sp~----~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~D 328 (696)
+|..... ++|+-| ..++|+|+.-|.|||.|+.. .+....+.+ |.+.|+.|.|.|+ .+++.+|+.|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-~~~~~~~~g--------hG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-GQCSKNYRG--------HGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch-hhhccceec--------cCccchhhhcCCCCCcEEEEecCC
Confidence 3555554 777764 45899999999999999988 788888888 9999999999995 4789999999
Q ss_pred CcEEEEEccCCeeEEEeec--ccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEE---------------
Q 005459 329 RGLTVWSVSGCRLMSTIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAI--------------- 388 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~--~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~--------------- 388 (696)
.+||+|++++..|+..+.| .|...|-++.|++++ +.++|+. ++++|++...+....
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g----d~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~p 233 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG----DRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRP 233 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC----CeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCc
Confidence 9999999999999999976 347889999999999 8888887 999999874322111
Q ss_pred -------------ecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc
Q 005459 389 -------------EEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP 454 (696)
Q Consensus 389 -------------~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 454 (696)
..-|...|=+..+ +..++|-+-++.+..|...+-++++--....+..... ...|.-.+..
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti------~~~~~~~~c~ 307 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI------LGEFDYPMCD 307 (385)
T ss_pred CCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee------eeEeccCccc
Confidence 1123333333334 7788888888889888874433321100000000001 1122222334
Q ss_pred eEEE--EEcCCCCEEEEEeCCccE-EEEccCCceEecCCcccee-eeEEEeEeee--CcEEEEE
Q 005459 455 VQHV--AASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQ-KIQSKGLLWL--GKIIVVC 512 (696)
Q Consensus 455 I~~v--a~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~-~~~v~~~~w~--~~~lv~~ 512 (696)
|+.+ +|+|-++.||.|...|.+ +||+....=.......+.+ .-.|+..+.. +.+|+..
T Consensus 308 iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 308 IWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred eEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 5555 456778999999999999 9999765321111111222 2236666664 4455554
No 172
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.47 E-value=1.4e-12 Score=136.82 Aligned_cols=248 Identities=15% Similarity=0.105 Sum_probs=161.4
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-----ecCCCCeEE-EEEcCC-CcEEEEEe
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-----ELGSGDAVC-ASIAPE-QQILAVGT 275 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~v~-v~~sp~-~~~la~g~ 275 (696)
.+..|...|.++++ -|-...+++.+.|.+++.||+...+. ..||...+. ++|.|. -..+++|+
T Consensus 95 ~~~aH~nAifDl~w----------apge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg 164 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKW----------APGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG 164 (720)
T ss_pred ccccccceeEeecc----------CCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc
Confidence 34466777888764 34233566677899999999876543 268999998 999995 56899999
Q ss_pred cCCeEEEEEccCCCc--------eee-EEee-------c--cCCCCCCCCCCeEE---EEECCCCCeEEEEEc-CCcEEE
Q 005459 276 RRGVVELYDLAESAS--------LIR-TVSL-------Y--DWGYSMDDTGPVSC---IAWTPDNSAFAVGWK-SRGLTV 333 (696)
Q Consensus 276 ~dg~v~vw~~~~~~~--------~~~-~~~~-------~--~~~~~~~h~g~V~~---l~~spdg~~lasg~~-Dg~v~v 333 (696)
.||.|.|||++..+. .+. ..++ . ...-.-+|.+.+.+ +-+.-|...||+++. |++|+|
T Consensus 165 RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKV 244 (720)
T KOG0321|consen 165 RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKV 244 (720)
T ss_pred CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEE
Confidence 999999999976320 000 0000 0 00001135555555 666778899999988 999999
Q ss_pred EEccCCeeEEEee--------ccc--ccceecccccCCCCCCccc-eecce--eeEEEcCCCce--EEEEecCCcc---e
Q 005459 334 WSVSGCRLMSTIR--------QIS--LSSISSPIVKPNQDCKYEP-LMSGT--SMMQWDEYGYR--LYAIEEGSSE---R 395 (696)
Q Consensus 334 W~~~~~~~~~~l~--------~~~--~~~v~~~~~sp~~~~~~~~-l~sg~--~~~~W~~~~~~--l~~~~~~~~~---~ 395 (696)
||+.......... -|. ...+.++..+..| .+ +++.. ++..|+..+.. ......++.. .
T Consensus 245 WDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~ 320 (720)
T KOG0321|consen 245 WDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFY 320 (720)
T ss_pred EeecccccccccCCCcccCccCcccceeeeEEEEecCCC----CeEEEEecCCcEEEEeccccCcCchhhccCcccceee
Confidence 9996554322211 010 0113333333333 33 33333 88889886543 2222223221 2
Q ss_pred E-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeC
Q 005459 396 V-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGL 472 (696)
Q Consensus 396 v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~ 472 (696)
+ ..+++ +.++++++.|....+|.+..-+. -|..|.+|.-.|.+++|.|.- .-+|++++
T Consensus 321 vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-------------------~~~~l~Ght~eVt~V~w~pS~~t~v~TcSd 381 (720)
T KOG0321|consen 321 VKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-------------------PPALLLGHTREVTTVRWLPSATTPVATCSD 381 (720)
T ss_pred eeeecCCCCceEeccCCCcceeeeeecCccC-------------------ChhhhhCcceEEEEEeeccccCCCceeecc
Confidence 2 44566 88999999999999999887766 366788999999999997743 24666699
Q ss_pred CccE-EEEccCC
Q 005459 473 HGLI-LYDIRQK 483 (696)
Q Consensus 473 dG~i-~w~~~sg 483 (696)
|-.+ +|++..+
T Consensus 382 D~~~kiW~l~~~ 393 (720)
T KOG0321|consen 382 DFRVKIWRLSNG 393 (720)
T ss_pred CcceEEEeccCc
Confidence 9999 9999655
No 173
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=2e-10 Score=125.47 Aligned_cols=285 Identities=11% Similarity=0.133 Sum_probs=166.8
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccC---CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
..|+++||.++++|+|-.||.|.+|.--. .....+.++= |...|.+++||+||.+|.||+..+.+.+|.
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--------cccccceeEEecCCceEeecccceEEEEEe
Confidence 45699999999999999999999997432 1233456666 899999999999999999999999999999
Q ss_pred ccCCeeEEEeecccccceecccccCCCCCCcccee--cce-eeEEEcCCCceEEEEecC---C-------cc---eEEEE
Q 005459 336 VSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SGT-SMMQWDEYGYRLYAIEEG---S-------SE---RVLIF 399 (696)
Q Consensus 336 ~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--sg~-~~~~W~~~~~~l~~~~~~---~-------~~---~v~~~ 399 (696)
+.+++ -.-|+.- .+.+..+.++||+ +... .+. .+.+-....-++..+..+ . .. ..+++
T Consensus 280 ~~T~~-kqfLPRL-gs~I~~i~vS~ds----~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 280 LETGK-KQFLPRL-GSPILHIVVSPDS----DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred ecCCC-ccccccc-CCeeEEEEEcCCC----CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 98876 3334433 3568889999987 2221 111 121111111111111111 0 11 23667
Q ss_pred ec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC------
Q 005459 400 SF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL------ 472 (696)
Q Consensus 400 ~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~------ 472 (696)
++ .+.++-.+..+.++++++.....- +-++-.+.. .......+.-+|+.++.+..|.++|++-.
T Consensus 354 dpr~~~~vln~~~g~vQ~ydl~td~~i-~~~~v~~~n--------~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYDLYTDSTI-YKLQVCDEN--------YSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred cCCCCceeecCCCceEEEEecccccee-eeEEEEeec--------ccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 77 667777788889999987665541 111110000 00011123346889999999999998743
Q ss_pred --CccE---EEE--ccCCceEecCC--ccceeeeEEEeEee--eCcEEEEEEeecCCCeEEEEEeeCC---CC---Cccc
Q 005459 473 --HGLI---LYD--IRQKKWRVFGD--ITQEQKIQSKGLLW--LGKIIVVCNYIDSSNTYELLFYPRY---HL---DQSS 535 (696)
Q Consensus 473 --dG~i---~w~--~~sg~w~~f~~--~~~e~~~~v~~~~w--~~~~lv~~~~~~~~~~~~lr~y~~~---~l---~~~~ 535 (696)
||.+ .|- -+++.|.+-.. ..|+..+.+..+.= ..+..+++ +.+..+++|... +. +...
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta-----~~dg~~KiW~~~~~~n~~k~~s~W 499 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTA-----SVDGDFKIWVFTDDSNIYKKSSNW 499 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEe-----ccCCeEEEEEEecccccCcCccce
Confidence 3332 443 34445655332 22343333332221 12233343 455678888762 11 1111
Q ss_pred e----eEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 536 L----LCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 536 ~----~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
. .+-+..+.....++-+| .+|+.+.+..+.+|++.-
T Consensus 500 ~c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 500 TCKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEeeeeccccCcccchhhcCCC-cEEEEecCCEEEEecCCC
Confidence 1 11123344334555444 666667789999999865
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.45 E-value=1.7e-10 Score=124.21 Aligned_cols=304 Identities=20% Similarity=0.265 Sum_probs=203.9
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecc-ee---cC-CCCeEE-EEE-cCCCc-EEEEEec-CCeEEEEEccCCCceeeEEe
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKID-KE---LG-SGDAVC-ASI-APEQQ-ILAVGTR-RGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~-~~---~~-~~~~v~-v~~-sp~~~-~la~g~~-dg~v~vw~~~~~~~~~~~~~ 296 (696)
+.+++..++..+.++.+.+|+..... .. .+ +...+. +.+ ++++. .++..+. |+.+++|+..........+.
T Consensus 73 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 152 (466)
T COG2319 73 FSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE 152 (466)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe
Confidence 56667777766677778888876553 21 22 221333 555 88888 5555444 99999999875335666677
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-ceecce-
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLMSGT- 373 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~sg~- 373 (696)
. |...|..++|+|++..+++++. |+.+++|++........+.+| ...+..++++|++ . .++++.
T Consensus 153 ~--------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~----~~~~~~~~~ 219 (466)
T COG2319 153 G--------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGH-TDPVSSLAFSPDG----GLLIASGSS 219 (466)
T ss_pred c--------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccC-CCceEEEEEcCCc----ceEEEEecC
Confidence 7 9999999999999999999986 999999999998888888886 7789999999887 4 444422
Q ss_pred --eeEEEcCCCceEEE-EecCCcce-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 374 --SMMQWDEYGYRLYA-IEEGSSER-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 374 --~~~~W~~~~~~l~~-~~~~~~~~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
.+.+|+...+..+. ...+|... +..+++ +..+++++.|+.+++|+....... ...+
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------------~~~~ 280 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-------------------LRTL 280 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcE-------------------EEEE
Confidence 77799888777777 57777666 445666 567889999999999998765541 1122
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCC-ccceeeeEEEeEeeeC--cEEEEEEeecCCCeEEEE
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGD-ITQEQKIQSKGLLWLG--KIIVVCNYIDSSNTYELL 524 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~-~~~e~~~~v~~~~w~~--~~lv~~~~~~~~~~~~lr 524 (696)
.+|..+|.++.|+|++..+++++.|+.+ +|+..+.+...... ..++. .+..+.|.. ..++.+. ..+..++
T Consensus 281 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~d~~~~ 354 (466)
T COG2319 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGG----SDDGTIR 354 (466)
T ss_pred ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEee----cCCCcEE
Confidence 5678899999999999999999999888 99888775332221 12222 345555522 2344432 2226777
Q ss_pred EeeCCCCCccceeEEeecCC--ccEEEEccCCEEEE--EEcCceEEEEEEEE
Q 005459 525 FYPRYHLDQSSLLCRKSLLA--KPIVMDVYEDYILV--TYRPFDVHIFHVKL 572 (696)
Q Consensus 525 ~y~~~~l~~~~~~~~~~~~~--~~l~~~~~~~~llv--~~~d~~~~l~~~~~ 572 (696)
+|+...... ..... ... ..+.+.. . .... ...+..+.+|+...
T Consensus 355 ~~~~~~~~~--~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG2319 355 LWDLRTGKP--LKTLE-GHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLST 401 (466)
T ss_pred eeecCCCce--eEEec-CCceEEEEEECC-C-CCEEEEecCCCceEEEeccc
Confidence 787752211 11111 111 1233333 3 2222 35667788887653
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.6e-13 Score=153.07 Aligned_cols=228 Identities=18% Similarity=0.232 Sum_probs=171.2
Q ss_pred EEEEeeccCCceeeeeeec---ce------ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 232 LMSCSVSKKGLKLAEFIKI---DK------ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~---~~------~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
+++.+..||.+.+|+.... .. ...|.+.|. +.||+... +||+|..||.|.|||+........ ..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~-~~---- 156 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFT-PG---- 156 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCC-CC----
Confidence 3666668888888886542 11 156899998 99999755 999999999999999987222211 11
Q ss_pred CCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccc-cceecccccCCCCCCccceecce----e
Q 005459 301 GYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISL-SSISSPIVKPNQDCKYEPLMSGT----S 374 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~-~~v~~~~~sp~~~~~~~~l~sg~----~ 374 (696)
...-...|.+|+|+. ....||+|+.+|.+.|||+...+.+-.+..++. ..++.++|+|+.. +.-.++++. .
T Consensus 157 --~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 157 --SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPV 233 (1049)
T ss_pred --CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCce
Confidence 112467899999997 566889999999999999998877777766533 3478899999973 222333433 7
Q ss_pred eEEEcCCC-ceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee
Q 005459 375 MMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI 449 (696)
Q Consensus 375 ~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 449 (696)
+..||.+. ...+.++++|...|+.+++ ...++|++.|+.+.+|+..+++. ...+-
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv--------------------l~~~p 293 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV--------------------LGELP 293 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE--------------------eeecC
Confidence 88999763 3345566799999988887 46789999999999999888764 33333
Q ss_pred cCCCceEEEEEcCCCC-EEEEEeCCccE-EEEccCCceEe
Q 005459 450 SQNWPVQHVAASKDGM-FLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~-~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
.....+..+.|+|..- .+|+++-||.| +|++.+..+..
T Consensus 294 ~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 294 AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred CCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 3455689999999765 89999999999 99999876554
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.45 E-value=1.6e-13 Score=147.37 Aligned_cols=226 Identities=15% Similarity=0.242 Sum_probs=166.6
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
++++...|+.++++++|.-+++|...++.++ .||+.-+. ++++.+.-++|+++.|..|++|.+.+ +.++..+.+
T Consensus 195 ca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~-~~pvsvLrg- 272 (1113)
T KOG0644|consen 195 CAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPD-GAPVSVLRG- 272 (1113)
T ss_pred eeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCC-CchHHHHhc-
Confidence 4567889999999999999999998887765 78998888 99999999999999999999999998 888989999
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--------------CCeeEEEeeccc---------------
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--------------GCRLMSTIRQIS--------------- 349 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--------------~~~~~~~l~~~~--------------- 349 (696)
|+|+|++++|||-- +.+.||++++||.. ++.+++.+....
T Consensus 273 -------htgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~ 341 (1113)
T KOG0644|consen 273 -------HTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR 341 (1113)
T ss_pred -------cccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence 99999999999954 77899999999974 222333322110
Q ss_pred ccceecccccCCCC------C-Cccceecce---eeEEEcCCCceEEEEecCCcceEEEEec----ceeeeeccCCCCce
Q 005459 350 LSSISSPIVKPNQD------C-KYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTY 415 (696)
Q Consensus 350 ~~~v~~~~~sp~~~------~-~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~ 415 (696)
...+..+++..+.- . .....++.. ..+.|+..++++.....+|.+.++++.+ .+...++++|++..
T Consensus 342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~ 421 (1113)
T KOG0644|consen 342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTI 421 (1113)
T ss_pred cchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceE
Confidence 00011111111100 0 001111111 5678999999999999999888866655 56678999999999
Q ss_pred eeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 416 ARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 416 ~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
+||+..|.. +..-+.+| ..+...+||+||+.++..-+-|.+ +....
T Consensus 422 iwdi~eg~p-------------------ik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 422 IWDIWEGIP-------------------IKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred eeecccCCc-------------------ceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccC
Confidence 999887765 11222343 456678999999999998888888 66543
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.44 E-value=1.9e-10 Score=121.60 Aligned_cols=297 Identities=9% Similarity=0.097 Sum_probs=160.5
Q ss_pred EEEEeeccCCceeeeeee-cc--e---ecCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCC
Q 005459 232 LMSCSVSKKGLKLAEFIK-ID--K---ELGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSM 304 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~-~~--~---~~~~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 304 (696)
++++...++.+.+|+... ++ . ......+..++++|++++|++++ .++.|.+|+++..+.. .......
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~----- 77 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP----- 77 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec-----
Confidence 344455677788887742 21 1 11223455599999999887764 5889999999742332 2222111
Q ss_pred CCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEccC-Cee---EEEeecccccceecccccCCCCCCccceecceeeEEEc
Q 005459 305 DDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVSG-CRL---MSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWD 379 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~~-~~~---~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~ 379 (696)
..+....++|+|||+.|+++.. ++.|.+|++.. +.. ...+.+ ......++++|++
T Consensus 78 -~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g----------------- 137 (330)
T PRK11028 78 -LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDN----------------- 137 (330)
T ss_pred -CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCC-----------------
Confidence 2345678999999998888764 78999999863 211 111111 0111222233332
Q ss_pred CCCceEEEEecCCcceEEEEecceee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEE
Q 005459 380 EYGYRLYAIEEGSSERVLIFSFGKCC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHV 458 (696)
Q Consensus 380 ~~~~~l~~~~~~~~~~v~~~~~~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~v 458 (696)
+.+ ++...++.+.+|++..... +.... ........ ....+.+
T Consensus 138 -----------------------~~l~v~~~~~~~v~v~d~~~~g~-l~~~~------------~~~~~~~~-g~~p~~~ 180 (330)
T PRK11028 138 -----------------------RTLWVPCLKEDRIRLFTLSDDGH-LVAQE------------PAEVTTVE-GAGPRHM 180 (330)
T ss_pred -----------------------CEEEEeeCCCCEEEEEEECCCCc-ccccC------------CCceecCC-CCCCceE
Confidence 222 2223345566666543111 00000 00000001 1235789
Q ss_pred EEcCCCCEEEEEeC-CccE-EEEcc--CCceEecCCccc-eeee----EEEeEeee--CcEEEEEEeecCCCeEEEEEee
Q 005459 459 AASKDGMFLAVAGL-HGLI-LYDIR--QKKWRVFGDITQ-EQKI----QSKGLLWL--GKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 459 a~s~dG~~la~ag~-dG~i-~w~~~--sg~w~~f~~~~~-e~~~----~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
+|+|||++++++.+ ++.+ +|++. +++.+....... ...+ ...++.+. ++++.+++ ..+..|.+|+
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~----~~~~~I~v~~ 256 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD----RTASLISVFS 256 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec----CCCCeEEEEE
Confidence 99999999988877 8888 99997 445443221110 0000 11134444 45777762 2345788887
Q ss_pred CCCCCc-cceeEEeec--CCccEEEEccCCEEEEEEc-CceEEEEEEEEecccCCCCCCeeEeEEEEEEeecccCCCCce
Q 005459 528 RYHLDQ-SSLLCRKSL--LAKPIVMDVYEDYILVTYR-PFDVHIFHVKLFGELTPSTTPDLQLSTVRELSIMTAKSHPAA 603 (696)
Q Consensus 528 ~~~l~~-~~~~~~~~~--~~~~l~~~~~~~~llv~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 603 (696)
.+.-.. ..+....+. ...-+.+++++++|+++.. ++.+.+|+++.++ ..+..++.+. ....|.|
T Consensus 257 i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~---------g~l~~~~~~~---~g~~P~~ 324 (330)
T PRK11028 257 VSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGET---------GLLTELGRYA---VGQGPMW 324 (330)
T ss_pred EeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCC---------CcEEEccccc---cCCCceE
Confidence 741111 111222111 1125788899999999664 7889999876321 1243444333 2567888
Q ss_pred EEEe
Q 005459 604 MRFI 607 (696)
Q Consensus 604 ~~~~ 607 (696)
|+.+
T Consensus 325 ~~~~ 328 (330)
T PRK11028 325 VSVL 328 (330)
T ss_pred EEEE
Confidence 7764
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=4.3e-12 Score=126.23 Aligned_cols=196 Identities=14% Similarity=0.187 Sum_probs=149.9
Q ss_pred cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEE
Q 005459 254 LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAV 324 (696)
Q Consensus 254 ~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~las 324 (696)
.||..++. ++|+| +...||+|++|.+|.||++.+.+ +++..+.+ |+..|--++|.|- -+.|++
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g--------H~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG--------HQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee--------cceeEEEEeecccchhhHhh
Confidence 68999999 99999 67899999999999999998732 34566777 9999999999994 568999
Q ss_pred EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcce----EE
Q 005459 325 GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSER----VL 397 (696)
Q Consensus 325 g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~----v~ 397 (696)
++.|.+|.+|++.++..+-+|. | .+.|.++.|+.+| ..+++.+ ++++||+..++++....+|.+. ++
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~-h-pd~i~S~sfn~dG----s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Rai 223 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD-H-PDMVYSMSFNRDG----SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAI 223 (472)
T ss_pred ccCCceEEEEeccCCceeeecC-C-CCeEEEEEeccCC----ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeE
Confidence 9999999999999999888888 5 7889999999999 8888887 8999999999998887666542 33
Q ss_pred EEecceeeeeccCC----CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee--ecCCCceEEEEEcCCCCEEEEEe
Q 005459 398 IFSFGKCCLNRGVS----GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY--ISQNWPVQHVAASKDGMFLAVAG 471 (696)
Q Consensus 398 ~~~~~~~~~s~~~d----~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~--~~~~~~I~~va~s~dG~~la~ag 471 (696)
-+.-++ ++|.+.. ..+-+|+-..-+. |-.+ +.....|.-=-+++|-+.+-.+|
T Consensus 224 fl~~g~-i~tTGfsr~seRq~aLwdp~nl~e--------------------P~~~~elDtSnGvl~PFyD~dt~ivYl~G 282 (472)
T KOG0303|consen 224 FLASGK-IFTTGFSRMSERQIALWDPNNLEE--------------------PIALQELDTSNGVLLPFYDPDTSIVYLCG 282 (472)
T ss_pred EeccCc-eeeeccccccccceeccCcccccC--------------------cceeEEeccCCceEEeeecCCCCEEEEEe
Confidence 333366 4444433 3445566444333 2221 22333466667889988776555
Q ss_pred -CCccE-EEEccCCc
Q 005459 472 -LHGLI-LYDIRQKK 484 (696)
Q Consensus 472 -~dG~i-~w~~~sg~ 484 (696)
.||.| .|.+....
T Consensus 283 KGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 283 KGDSSIRYFEITNEP 297 (472)
T ss_pred cCCcceEEEEecCCC
Confidence 58899 99887764
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=1.1e-11 Score=135.50 Aligned_cols=233 Identities=13% Similarity=0.067 Sum_probs=144.4
Q ss_pred CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC---cEEEEEEEEecCcccccCCCCCCCceee
Q 005459 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (696)
Q Consensus 40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d---g~l~l~~l~~~~~~~~~~~~~~~~~~~~ 116 (696)
..|.|||.. ... ...+.+ ..+.+....|||||+.||..+.+ ..|.+||+.++......
T Consensus 184 ~~i~i~d~d-g~~-~~~lt~------~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------- 244 (429)
T PRK01742 184 YEVRVADYD-GFN-QFIVNR------SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------- 244 (429)
T ss_pred EEEEEECCC-CCC-ceEecc------CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------
Confidence 589999985 322 111111 23457889999999999987654 36899998754321110
Q ss_pred eeeEEEeeeccccccceeEEEeeeCCCeEEEEe-cCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-SDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (696)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~ 195 (696)
. ..+... ..++++|++.|+++. .+|.+.++.|+........
T Consensus 245 ------~----~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~--------------------------- 286 (429)
T PRK01742 245 ------S----FRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ--------------------------- 286 (429)
T ss_pred ------c----CCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---------------------------
Confidence 0 011111 136788898888865 5777766666532221110
Q ss_pred CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeec---ceecCCCCeEEEEEcCCCcEE
Q 005459 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKI---DKELGSGDAVCASIAPEQQIL 271 (696)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~---~~~~~~~~~v~v~~sp~~~~l 271 (696)
+..+...+ ....++|||+.++..+ .++..++|+.... ....++.. .+.+|+|||+.|
T Consensus 287 --------lt~~~~~~----------~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~i 347 (429)
T PRK01742 287 --------LTSGAGNN----------TEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTL 347 (429)
T ss_pred --------eccCCCCc----------CCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEE
Confidence 00011111 2245789999766555 4667788875421 11123333 347899999999
Q ss_pred EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc--CCeeEEEeeccc
Q 005459 272 AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS--GCRLMSTIRQIS 349 (696)
Q Consensus 272 a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~--~~~~~~~l~~~~ 349 (696)
|+++.++.+ +||+.+ +... .+.. + .....++|+|||+.|+.++.+++..+|.+. .+.....+.+|
T Consensus 348 a~~~~~~i~-~~Dl~~-g~~~-~lt~--------~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~- 414 (429)
T PRK01742 348 VMINGDNVV-KQDLTS-GSTE-VLSS--------T-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS- 414 (429)
T ss_pred EEEcCCCEE-EEECCC-CCeE-EecC--------C-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC-
Confidence 998887654 589876 4432 2222 1 123467899999999999999999988863 46677888766
Q ss_pred ccceecccccCC
Q 005459 350 LSSISSPIVKPN 361 (696)
Q Consensus 350 ~~~v~~~~~sp~ 361 (696)
...+..++|+|.
T Consensus 415 ~g~~~~p~wsp~ 426 (429)
T PRK01742 415 DGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCcccCCC
Confidence 556788888875
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-11 Score=126.25 Aligned_cols=257 Identities=10% Similarity=0.125 Sum_probs=173.4
Q ss_pred EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCe----eEEEeecc
Q 005459 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCR----LMSTIRQI 348 (696)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~----~~~~l~~~ 348 (696)
++...++++||+.+ .+....+.. +...| .+.++.|+.... ..|+.+.|+.+++|.-.+.. .+..+.+.
T Consensus 8 aS~gd~~kl~D~s~-~~~~~~~~~----~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd 80 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSD-LETKSEYVH----QTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD 80 (673)
T ss_pred eccCCceEEeeccc-ccCcccccc----CCCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc
Confidence 34445799999987 433333322 11122 399999998764 45566788999999865541 12222222
Q ss_pred cccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeec
Q 005459 349 SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 349 ~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~ 422 (696)
....|.+..+ . .++++|. .+.+||+....+...+++|.+.|..+.+ ..++++++..|-+.++.+.++
T Consensus 81 ~~~Cv~~~s~---S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~ 153 (673)
T KOG4378|consen 81 NAFCVACASQ---S----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK 153 (673)
T ss_pred hHHHHhhhhc---c----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC
Confidence 1112222222 2 4566665 8999999977778888999999977776 778999999999999887766
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeeec-CCCceEEEEEcCCCCE-EEEEeCCccE-EEEccCCceEecCCccceeeeEE
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYIS-QNWPVQHVAASKDGMF-LAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQS 499 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~-la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v 499 (696)
.. -.+|.. .+..||-+.+||..++ |.++|.+|.+ +||++..+=+.--.+ .+...+
T Consensus 154 ~~--------------------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~ 211 (673)
T KOG4378|consen 154 QK--------------------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPC 211 (673)
T ss_pred cc--------------------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCc
Confidence 54 233432 2456889999998885 6789999999 999987653322222 223347
Q ss_pred EeEeee--CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 500 KGLLWL--GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 500 ~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.|+|+. +..|++. + +-+..|.+|+.. +-....+.+.+++.+ +.+..+|-+|+.+...+.+.-|++..
T Consensus 212 ~gicfspsne~l~vs--V--G~Dkki~~yD~~s~~s~~~l~y~~Plst--vaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 212 RGICFSPSNEALLVS--V--GYDKKINIYDIRSQASTDRLTYSHPLST--VAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred CcceecCCccceEEE--e--cccceEEEeecccccccceeeecCCcce--eeecCCceEEEeecCCceEEEEeccc
Confidence 788885 4445443 2 334689999886 323333667777776 89999999999999999888887765
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=8.7e-11 Score=117.63 Aligned_cols=183 Identities=17% Similarity=0.207 Sum_probs=122.4
Q ss_pred cccccEEEEcCCCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCC
Q 005459 67 EGENLQAVWSPDTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNK 143 (696)
Q Consensus 67 ~G~~~~v~wsPDg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~ 143 (696)
+.++..+.|.+.+. .||+++.|..++||.+..+....- ...+ +....+..+...|+++ .++++
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V----~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKV----EYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeE----EEeecccCCcceeEEEEEcCCcC
Confidence 45677888988887 999999999999999986542110 0111 1112233444445444 55666
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
.++.|.++|.+.+ |.... ..+
T Consensus 79 lLASg~D~g~v~l--Wk~~~---------------------------------------------~~~------------ 99 (434)
T KOG1009|consen 79 LLASGGDGGEVFL--WKQGD---------------------------------------------VRI------------ 99 (434)
T ss_pred eeeecCCCceEEE--EEecC---------------------------------------------cCC------------
Confidence 7777777787766 43110 001
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
+..|.. .-.+. ..|-.. +.+.+|.+-+. ++|+||+.++++|+-|.++++||+.. +.....+..
T Consensus 100 --~~~d~e----~~~~k--e~w~v~--k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~d----- 163 (434)
T KOG1009|consen 100 --FDADTE----ADLNK--EKWVVK--KVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDD----- 163 (434)
T ss_pred --ccccch----hhhCc--cceEEE--EEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccc-----
Confidence 001110 00000 112211 12256777777 99999999999999999999999998 777777777
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
|..-|.-++|.|-++++++-+.|...+..+....+.
T Consensus 164 ---h~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 164 ---HEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred ---cccccceeecchhhhhhhhhccCcccceeeeeeeee
Confidence 999999999999999999999999888877754443
No 182
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.39 E-value=7.1e-12 Score=118.60 Aligned_cols=268 Identities=16% Similarity=0.176 Sum_probs=157.3
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcc--cccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG--ENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G--~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
...-+.|-.+++|++-...+.|.+|... .. |..-.++.+| .+..+.--|. ..+.+...|+.|.+|++..
T Consensus 16 ~v~s~~fqa~~rL~sg~~~G~V~~w~lq-t~-------r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 16 SVTSVLFQANERLMSGLSVGIVKMWVLQ-TE-------RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred hheehhhccchhhhcccccceEEEEEee-cC-------ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 3444668888998876678899999993 32 3332333232 3455666776 6788889999999999986
Q ss_pred cCcc--------------c-ccCCCCCCCcee--eee---eEE-----Eeeecc-----ccccceeEEEeeeC---CC--
Q 005459 99 TEKS--------------I-QIGGKQPSGLFF--IKI---SLV-----LNEQLP-----FAEKGLSVSNIVSD---NK-- 143 (696)
Q Consensus 99 ~~~~--------------~-~~~~~~~~~~~~--~~~---~l~-----~~~~~~-----~~~~~~~v~~~~~~---~~-- 143 (696)
+.-- . +.....+.++.+ .+- ++. ..-++. -..+.++++|...+ +.
T Consensus 87 s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred cceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 4310 0 000111100000 000 000 000000 01234566666421 22
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
.+++|-.+|.+..|+...+. .... .|+... .-.....+...+.+++|.+.-+.-
T Consensus 167 lllaGyEsghvv~wd~S~~~-~~~~---~~~~~k----------------------v~~~~ash~qpvlsldyas~~~rG 220 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGD-KIIQ---LPQSSK----------------------VESPNASHKQPVLSLDYASSCDRG 220 (323)
T ss_pred EEEEeccCCeEEEEEccCCc-eeec---cccccc----------------------cccchhhccCcceeeeechhhcCC
Confidence 35566677888775443321 1110 111100 001233556678888887655443
Q ss_pred EEEEeCCcEEEEeeccCC--ceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 224 FVLYSNGQLMSCSVSKKG--LKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
+...++-+.....-++.+ ..+-.... ..| ..+. +.+-||++.+|+++.||.||||+.++ ..++..++-
T Consensus 221 isgga~dkl~~~Sl~~s~gslq~~~e~~----lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrt-l~pLAVLky--- 291 (323)
T KOG0322|consen 221 ISGGADDKLVMYSLNHSTGSLQIRKEIT----LKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRT-LNPLAVLKY--- 291 (323)
T ss_pred cCCCccccceeeeeccccCcccccceEE----ecC-CCccceEEccCCcEEeecccCCcEEEEEecc-CCchhhhhh---
Confidence 434444444433322211 11100000 122 2344 88999999999999999999999998 888888888
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
|++.|++++|+||...+|++++|+.|.+|+++
T Consensus 292 -----Hsagvn~vAfspd~~lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 292 -----HSAGVNAVAFSPDCELMAAASKDARISLWKLY 323 (323)
T ss_pred -----hhcceeEEEeCCCCchhhhccCCceEEeeecC
Confidence 99999999999999999999999999999874
No 183
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.39 E-value=5.6e-11 Score=113.88 Aligned_cols=216 Identities=18% Similarity=0.196 Sum_probs=157.2
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEE
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTV 333 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~v 333 (696)
+...-|+.|.|++..+|+-. |..|.+|+++...+....+.. +.+.+|+...++-+||| ||+.+++.++ ++++.
T Consensus 123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s---s~s~e~~~~ftsg~WspHHdgnqv~tt~d-~tl~~ 197 (370)
T KOG1007|consen 123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS---SESAEMRHSFTSGAWSPHHDGNQVATTSD-STLQF 197 (370)
T ss_pred hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc---cccccccceecccccCCCCccceEEEeCC-CcEEE
Confidence 34556799999999988755 889999999873332333332 22334677788899999 9999998876 99999
Q ss_pred EEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC-ceEEEEecCCcceEEEEec----ceee
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG-YRLYAIEEGSSERVLIFSF----GKCC 405 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~-~~l~~~~~~~~~~v~~~~~----~~~~ 405 (696)
||+.+......++..|...|..+.|.|+. ...++++. .+++||.+. ...+..+.+|...||++.| .+.+
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnk---q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNK---QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCc---eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999888888887556679999999985 25566665 899999875 4567778899999977766 6789
Q ss_pred eeccCCCCceeeeeeecCCeEEEEecCCCCc-----ceeEEeec----CeeeecCCCceEEEEEcCCC-CEEEEEeCCcc
Q 005459 406 LNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-----LKILHLNL----PVSYISQNWPVQHVAASKDG-MFLAVAGLHGL 475 (696)
Q Consensus 406 ~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-----~~w~~~~~----~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~ 475 (696)
+|++.|..+.+|....-..+.-+..+.|..+ ..-++..+ ..+|..|...|++++||.-. =.+|+-+-||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 9999999998887654433222332332221 11111122 34889999999999998654 46789999999
Q ss_pred EEEE
Q 005459 476 ILYD 479 (696)
Q Consensus 476 i~w~ 479 (696)
++-+
T Consensus 355 viIs 358 (370)
T KOG1007|consen 355 VIIS 358 (370)
T ss_pred EEee
Confidence 8443
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=2.9e-10 Score=112.78 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=100.5
Q ss_pred ceeeeeeeccee------cCCCCeEE-EEEcCCCcEEEEE--ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE
Q 005459 242 LKLAEFIKIDKE------LGSGDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC 312 (696)
Q Consensus 242 ~~~~~~~~~~~~------~~~~~~v~-v~~sp~~~~la~g--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~ 312 (696)
+.+.|+.+-+.+ ..+...+| +++|+.+.+||.= ...|.|.|||+.+ .+...++.. |.+++.+
T Consensus 108 IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~a--------H~~~lAa 178 (391)
T KOG2110|consen 108 IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN-LQPVNTINA--------HKGPLAA 178 (391)
T ss_pred EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc-ceeeeEEEe--------cCCceeE
Confidence 666766544332 34566677 8888888899963 3469999999988 788888888 9999999
Q ss_pred EEECCCCCeEEEEEcCCc-EEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459 313 IAWTPDNSAFAVGWKSRG-LTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (696)
Q Consensus 313 l~~spdg~~lasg~~Dg~-v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (696)
|+|+|||.+||++++.|+ |||+++..++.+..++.. -...+.+++|+|+. +.+...+ ++.++.++.
T Consensus 179 lafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds----~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 179 LAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDS----QFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCC----CeEEEecCCCeEEEEEecc
Confidence 999999999999999998 699999999999999853 23458899999998 6655433 666665543
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.3e-11 Score=134.29 Aligned_cols=298 Identities=12% Similarity=0.110 Sum_probs=169.3
Q ss_pred cEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec
Q 005459 71 LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS 150 (696)
Q Consensus 71 ~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~ 150 (696)
..+.|+|=..+++++...-.+++||-+.+.....+.....+...+.++++..+ .|...+++|+.
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe----------------~D~aLlLtas~ 1131 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE----------------QDDALLLTASS 1131 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc----------------cchhheeeecc
Confidence 46889998899999988889999999866542222222222233333332111 13457899999
Q ss_pred CCcEEEEecCCcccc--ceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459 151 DGSLYSISWKGEFYG--AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (696)
Q Consensus 151 ~g~i~~~~w~~~~~~--~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~ 228 (696)
||.|++| +.-... ..++ -+.-++...++.. ......+++ |--.
T Consensus 1132 dGvIRIw--k~y~~~~~~~eL----------VTaw~~Ls~~~~~------------~r~~~~v~d-----------WqQ~ 1176 (1387)
T KOG1517|consen 1132 DGVIRIW--KDYADKWKKPEL----------VTAWSSLSDQLPG------------ARGTGLVVD-----------WQQQ 1176 (1387)
T ss_pred CceEEEe--cccccccCCcee----------EEeeccccccCcc------------CCCCCeeee-----------hhhh
Confidence 9999984 432221 1110 0000001110000 000112221 1223
Q ss_pred CCcEEEEeeccCCceeeeeeecceecC--CCCeEE-EEEcC---CCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKELG--SGDAVC-ASIAP---EQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDW 300 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~v~-v~~sp---~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~ 300 (696)
.|.++. ++.-..+++||.....+..+ -....+ .+.++ .|+.||.|..||.||+||.+... ..+...+.
T Consensus 1177 ~G~Ll~-tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~--- 1252 (1387)
T KOG1517|consen 1177 SGHLLV-TGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE--- 1252 (1387)
T ss_pred CCeEEe-cCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc---
Confidence 455444 34466799999887654411 112222 33444 48999999999999999988632 24555665
Q ss_pred CCCCCCCCC--eEEEEECCCCCe-EEEEEcCCcEEEEEccCCeeEEEe--eccc--ccceecccccCCCCCCccceecce
Q 005459 301 GYSMDDTGP--VSCIAWTPDNSA-FAVGWKSRGLTVWSVSGCRLMSTI--RQIS--LSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 301 ~~~~~h~g~--V~~l~~spdg~~-lasg~~Dg~v~vW~~~~~~~~~~l--~~~~--~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
|+.. |..+.+-+.|.. |++|+.||.|++||+........+ ..|- .+..+++..++.. ..++
T Consensus 1253 -----h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha----piiA--- 1320 (1387)
T KOG1517|consen 1253 -----HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA----PIIA--- 1320 (1387)
T ss_pred -----cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCC----Ceee---
Confidence 7776 999999998776 999999999999999764211111 1110 0113344444433 3333
Q ss_pred eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec-CC
Q 005459 374 SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS-QN 452 (696)
Q Consensus 374 ~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~ 452 (696)
+|+. +.+++|++.......+.+ -..|.+ ..
T Consensus 1321 ---------------------------------sGs~-q~ikIy~~~G~~l~~~k~---------------n~~F~~q~~ 1351 (1387)
T KOG1517|consen 1321 ---------------------------------SGSA-QLIKIYSLSGEQLNIIKY---------------NPGFMGQRI 1351 (1387)
T ss_pred ---------------------------------ecCc-ceEEEEecChhhhccccc---------------CcccccCcC
Confidence 4443 444455433222111100 011222 23
Q ss_pred CceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
..+.|++|.|---.+|+|..|.++ +|....++
T Consensus 1352 gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1352 GSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 457899999999999999999999 99876543
No 186
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.37 E-value=1.8e-11 Score=126.38 Aligned_cols=95 Identities=21% Similarity=0.419 Sum_probs=85.2
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
+++. .+|+|||++||+-++||.+||||.++ .+++-.++. .-|...|++|||||++|++|++|.-|.||++
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt-~eLlg~mkS--------YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf 361 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDT-QELLGVMKS--------YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSF 361 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccH-HHHHHHHHh--------hccceEEEEEcCCccEEEecCCcceEEEEEe
Confidence 4566 99999999999999999999999987 666655555 5688999999999999999999999999999
Q ss_pred cCCeeEEEeecccccceecccccCCC
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
..++.++.=++| .+.|+.++|+|.-
T Consensus 362 ~erRVVARGqGH-kSWVs~VaFDpyt 386 (636)
T KOG2394|consen 362 EERRVVARGQGH-KSWVSVVAFDPYT 386 (636)
T ss_pred ccceEEEecccc-ccceeeEeecccc
Confidence 999999998888 8999999998853
No 187
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=1.5e-11 Score=120.57 Aligned_cols=227 Identities=16% Similarity=0.163 Sum_probs=139.7
Q ss_pred CCcEEEEeeccCCceeeeeeeccee-----cCCC--CeEEEEEcCCCcEEEEEec----CCeEEEEEccCCCceeeEEee
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKE-----LGSG--DAVCASIAPEQQILAVGTR----RGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~--~~v~v~~sp~~~~la~g~~----dg~v~vw~~~~~~~~~~~~~~ 297 (696)
.+..+.+++.||++++||.+...+. .++. .-+|++.+-+.++++.|.. |-.|.+||++...++++.+..
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~e 162 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNE 162 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhh
Confidence 4567788889999999999864332 3344 3456888889999999974 788999999985555655544
Q ss_pred ccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCe----eEEEeecccccceecccccCCCCCCccceecc
Q 005459 298 YDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCR----LMSTIRQISLSSISSPIVKPNQDCKYEPLMSG 372 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~----~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg 372 (696)
.|...|++|+|.| |.+.|++|+-||-|.|+|+.... +++++. + .++|..+.|..++ ++.+..=
T Consensus 163 -------SH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN-~-~sSI~~igw~~~~---ykrI~cl 230 (376)
T KOG1188|consen 163 -------SHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN-H-GSSIHLIGWLSKK---YKRIMCL 230 (376)
T ss_pred -------hccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc-c-cceeeeeeeecCC---cceEEEE
Confidence 4999999999999 78899999999999999996542 233332 2 2446666665543 2222211
Q ss_pred e---eeEEEcCCCceEEEEecCCc------------ceE-EEEec--ceee-eeccCCCCceeeeeeecCCeEEEEecCC
Q 005459 373 T---SMMQWDEYGYRLYAIEEGSS------------ERV-LIFSF--GKCC-LNRGVSGMTYARQVIYGEDRLLVVQSED 433 (696)
Q Consensus 373 ~---~~~~W~~~~~~l~~~~~~~~------------~~v-~~~~~--~~~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~ 433 (696)
+ +-..|+.+.+.....++... +.+ -...+ .... +.++..+...+..+.....
T Consensus 231 TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s--------- 301 (376)
T KOG1188|consen 231 THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS--------- 301 (376)
T ss_pred EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc---------
Confidence 1 44456555443222221110 001 11112 1111 2222233333332221100
Q ss_pred CCcceeEEeecCeeeec-CCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 434 TDELKILHLNLPVSYIS-QNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 434 ~~~~~w~~~~~~~~~~~-~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
-...+-|..+.+ |..-||++.|...+..+.+||+||.+ +|..+
T Consensus 302 -----~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 302 -----GSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred -----ccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 001112334444 66779999999999999999999999 99863
No 188
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=3.5e-10 Score=127.14 Aligned_cols=220 Identities=12% Similarity=0.111 Sum_probs=133.8
Q ss_pred ccEEEE-cCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459 70 NLQAVW-SPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (696)
Q Consensus 70 ~~~v~w-sPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~ 148 (696)
+..++- +|+++++++++.||+|++|+...-.... +.. -..+.++. .+...........++.++++
T Consensus 1051 v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~-----rS~ltys~------~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSA-----RSELTYSP------EGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred ccceeecCCCCceEEEecCCceEEEeeehhhhcCc---cee-----eeeEEEec------cCCceEEEEeccCCCeEEEE
Confidence 345554 5566999999999999999997432210 000 00011111 11222233445678999999
Q ss_pred ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (696)
Q Consensus 149 t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~ 228 (696)
++||.|+.+.-+-....... ..+.++....+...+++|.... ..
T Consensus 1117 t~DG~v~~~~id~~~~~~~~----------------------------~~~~ri~n~~~~g~vv~m~a~~--------~~ 1160 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRV----------------------------ATQVRIPNLKKDGVVVSMHAFT--------AI 1160 (1431)
T ss_pred cCCCeEEEEEccccccccce----------------------------eeeeecccccCCCceEEeeccc--------cc
Confidence 99999998776642111110 0112233444555677775221 12
Q ss_pred CCc-EEEEeeccCCceeeeeeeccee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCC
Q 005459 229 NGQ-LMSCSVSKKGLKLAEFIKIDKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWG 301 (696)
Q Consensus 229 dG~-~~~~~~~d~~~~~~~~~~~~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~ 301 (696)
++. .++.+..-+.+..||....... ..|+-.+.++++|-++++++|+..|.+.+||++- ..++..++-
T Consensus 1161 ~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF-~~~i~sw~~---- 1235 (1431)
T KOG1240|consen 1161 VQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF-RVPILSWEH---- 1235 (1431)
T ss_pred ccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec-CceeecccC----
Confidence 233 3444444555666776543211 3455555599999999999999999999999997 666666654
Q ss_pred CCCCCCCCeEEEEECC---CCCeEEEE-E-cCCcEEEEEccCCeeEEEeec
Q 005459 302 YSMDDTGPVSCIAWTP---DNSAFAVG-W-KSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 302 ~~~~h~g~V~~l~~sp---dg~~lasg-~-~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
.+..+++.|...| .....+++ + ..+.|.+|++.++.+..++..
T Consensus 1236 ---P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1236 ---PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred ---cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence 2556777776665 33444444 4 578999999999877666653
No 189
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=9.9e-11 Score=115.50 Aligned_cols=187 Identities=21% Similarity=0.255 Sum_probs=136.1
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCe
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~ 340 (696)
++|++...-+|++..|-+||+|+-+. . ....++. .....|+||+|-|. ++.|+.|.. ++|.+|......
T Consensus 104 ~aWhqH~~~fava~nddvVriy~kss-t-~pt~Lks-------~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tl 173 (445)
T KOG2139|consen 104 VAWHQHIIAFAVATNDDVVRIYDKSS-T-CPTKLKS-------VSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTL 173 (445)
T ss_pred EeechhhhhhhhhccCcEEEEeccCC-C-CCceecc-------hhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccc
Confidence 89999888999999999999999765 2 2222332 14567999999994 557788877 899999874221
Q ss_pred ------------eEEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCCc--ceEEEEec-
Q 005459 341 ------------LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGSS--ERVLIFSF- 401 (696)
Q Consensus 341 ------------~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~~--~~v~~~~~- 401 (696)
....+++.|...|+++++.+|+ -.+++++ .+++|+++++...-...... ...+.++|
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dg----t~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPd 249 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDG----TILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPD 249 (445)
T ss_pred ccccccccccccchhheeCCCCceeeEEEEcCCC----CEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCC
Confidence 2233445445789999999998 7777765 89999999887655442222 23578888
Q ss_pred ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEcc
Q 005459 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIR 481 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~ 481 (696)
+..+..+..|+..++|...+.-.. ....--.+.|...+|||+|++|..+......+|++.
T Consensus 250 gd~lfaAt~davfrlw~e~q~wt~--------------------erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 250 GDVLFAATCDAVFRLWQENQSWTK--------------------ERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred CCEEEEecccceeeeehhccccee--------------------cceeccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 888999999999999976554321 111112337999999999999988887666688875
Q ss_pred C
Q 005459 482 Q 482 (696)
Q Consensus 482 s 482 (696)
.
T Consensus 310 f 310 (445)
T KOG2139|consen 310 F 310 (445)
T ss_pred e
Confidence 3
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.35 E-value=2.4e-11 Score=125.07 Aligned_cols=137 Identities=19% Similarity=0.197 Sum_probs=95.2
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecc
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQI 348 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~ 348 (696)
..++..+.||.+.+-+-. ++..+.+.. |.++|.+-.|+|||.-|.++++||.|++|+-.|. +-.++.+.
T Consensus 76 d~~~i~s~DGkf~il~k~--~rVE~sv~A--------H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~ 144 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS--ARVERSISA--------HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN 144 (737)
T ss_pred ceEEEEcCCceEEEeccc--chhhhhhhh--------hhhhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhc
Confidence 357778889988886633 555566666 9999999999999999999999999999996654 44555555
Q ss_pred cccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeee
Q 005459 349 SLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQV 419 (696)
Q Consensus 349 ~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~ 419 (696)
..+|.|++|.|+.. .-.+..|..+.+=.+....-+..-+.|++-|++++. ...++|++.|-..++||-
T Consensus 145 -~~~v~c~~W~p~S~--~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~ 215 (737)
T KOG1524|consen 145 -EESIRCARWAPNSN--SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA 215 (737)
T ss_pred -CceeEEEEECCCCC--ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecc
Confidence 45699999999862 111111111111111111122233467777877776 778999999999999993
No 191
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=2.1e-11 Score=119.56 Aligned_cols=270 Identities=13% Similarity=0.133 Sum_probs=169.2
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
..+|++..+|+|++||..+ ++.+..+++ |.+.++.++|.. .+..+.+|+.||+|++||+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~--------~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKG--------PPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecC--------CCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 6799999999999999998 888888998 888888999977 46789999999999999997765544443
Q ss_pred c--ccccceecccccCCCCCCccceecce-------eeEEEcCCCceE-EEE-ecCCcceEEE--Eec--ceeeeeccCC
Q 005459 347 Q--ISLSSISSPIVKPNQDCKYEPLMSGT-------SMMQWDEYGYRL-YAI-EEGSSERVLI--FSF--GKCCLNRGVS 411 (696)
Q Consensus 347 ~--~~~~~v~~~~~sp~~~~~~~~l~sg~-------~~~~W~~~~~~l-~~~-~~~~~~~v~~--~~~--~~~~~s~~~d 411 (696)
. +...+..+++. .|+...++.|. .+.+||.+..+- +.. ...|.+.|.+ |.| ...++||+.|
T Consensus 112 ~~~~~~~~f~~ld~----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 112 WTQQSGTPFICLDL----NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred ccCCCCCcceEeec----cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 2 31123333332 34556666665 788999986554 433 3568888854 555 6789999999
Q ss_pred CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecC
Q 005459 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~ 489 (696)
|.+.++|+....+. + -...-..|...|-.+.|..++ +.|.+-+..+.. +|+.+.+.-++-.
T Consensus 188 GLvnlfD~~~d~Ee----------D-------aL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEE----------D-------ALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred ceEEeeecCCCcch----------h-------hHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 99999998765431 0 011233566679999999998 335555666655 9999888632211
Q ss_pred Ccc--------cee--eeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC--CCCcc-cee---EEeecCCccEEEEcc
Q 005459 490 DIT--------QEQ--KIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY--HLDQS-SLL---CRKSLLAKPIVMDVY 552 (696)
Q Consensus 490 ~~~--------~e~--~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~--~l~~~-~~~---~~~~~~~~~l~~~~~ 552 (696)
+.. .|. ++.|.+.+= ..+..++++-. .....-+++-+.. .+.+. ..+ |.+-+. -++++..
T Consensus 251 ~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~-~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR--~i~~~~~ 327 (376)
T KOG1188|consen 251 ENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD-SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVR--DILFDVK 327 (376)
T ss_pred cCccchhhhHHhhhhhhheeecccCCCcceEEEeccc-cCceeEEEeeecccccccCccccccCCcHHHHH--HHhhhcc
Confidence 000 000 011111111 12333333111 1121222332222 22211 122 222222 2566778
Q ss_pred CCEEEEEEcCceEEEEEEE
Q 005459 553 EDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 553 ~~~llv~~~d~~~~l~~~~ 571 (696)
++.+.+++.|+.+.+|..+
T Consensus 328 ~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 328 NDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cceeeccCCCceEEEEecC
Confidence 8999999999999999863
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=4.9e-10 Score=105.02 Aligned_cols=238 Identities=15% Similarity=0.165 Sum_probs=150.0
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCC---------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESA---------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~---------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
-+++|.+++|+.|..+|+|.+..++.-. ..+-..+ +|.|+|..|+|.. ..|.+|+. |.|+
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eq--------ahdgpiy~~~f~d--~~Lls~gd-G~V~ 84 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQ--------AHDGPIYYLAFHD--DFLLSGGD-GLVY 84 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeecc--------ccCCCeeeeeeeh--hheeeccC-ceEE
Confidence 5789999999999999999999987521 1122223 4999999999983 46777766 9999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeecc
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRG 409 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~ 409 (696)
=|.-....... .+-..|......-.-.. ....| ..+.| ..+++.++
T Consensus 85 gw~W~E~~es~-----------------------------~~K~lwe~~~P~~~~~~--evPeINam~ldP~enSi~~Ag 133 (325)
T KOG0649|consen 85 GWEWNEEEESL-----------------------------ATKRLWEVKIPMQVDAV--EVPEINAMWLDPSENSILFAG 133 (325)
T ss_pred Eeeehhhhhhc-----------------------------cchhhhhhcCccccCcc--cCCccceeEeccCCCcEEEec
Confidence 88653221000 00011111100000000 01112 33444 55677777
Q ss_pred CCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceE-e
Q 005459 410 VSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWR-V 487 (696)
Q Consensus 410 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~-~ 487 (696)
.|+.++.||+..|.- ..+|.+|+.-|-+++--.....+.+|++||++ +||.+++|.. +
T Consensus 134 GD~~~y~~dlE~G~i--------------------~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRI--------------------QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CCeEEEEEEecCCEE--------------------EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence 889999999887764 56899999999999984444567799999999 9999999853 3
Q ss_pred cCCccceeeeE------EEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459 488 FGDITQEQKIQ------SKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (696)
Q Consensus 488 f~~~~~e~~~~------v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~ 561 (696)
.+...+++-.. +..++-..+-++++ ..-.+.+|.. ..+..-...++++++-.+.-.+|.++.++.
T Consensus 194 ie~yk~~~~lRp~~g~wigala~~edWlvCG------gGp~lslwhL---rsse~t~vfpipa~v~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALAVNEDWLVCG------GGPKLSLWHL---RSSESTCVFPIPARVHLVDFVDDCVLIGGE 264 (325)
T ss_pred eccccChhhcCcccCceeEEEeccCceEEec------CCCceeEEec---cCCCceEEEecccceeEeeeecceEEEecc
Confidence 22222222111 23455567777765 3357888844 344445677888876666666777777665
Q ss_pred CceEEEEEE
Q 005459 562 PFDVHIFHV 570 (696)
Q Consensus 562 d~~~~l~~~ 570 (696)
.+.+.-|.+
T Consensus 265 g~~v~~~~l 273 (325)
T KOG0649|consen 265 GNHVQSYTL 273 (325)
T ss_pred ccceeeeee
Confidence 445555543
No 193
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.8e-10 Score=114.34 Aligned_cols=286 Identities=9% Similarity=0.043 Sum_probs=189.1
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCC-----CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAES-----ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~-----~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
.+|.+.|. +.||.++++||+|+.|..++||+++.. .+++..... .|..-|.|++|....+.|.+|..
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~-------~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEH-------PHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccC-------ccccceEEEEEccCCeeEecCCC
Confidence 68999998 999999999999999999999998751 122322211 27789999999999999999999
Q ss_pred CCcEEEEEccCCeeEEEeecc-cccceecccccCCCCCCccceecce---eeEEEcCCCc----eEEEEecCCcceE--E
Q 005459 328 SRGLTVWSVSGCRLMSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGY----RLYAIEEGSSERV--L 397 (696)
Q Consensus 328 Dg~v~vW~~~~~~~~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~----~l~~~~~~~~~~v--~ 397 (696)
+++|..-|+.+.+.+..+... ....|..+..+|.+ ..+++.+ .+.+|+.... +++..... .... .
T Consensus 126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~-~~~F~t~ 200 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANS-GKNFYTA 200 (609)
T ss_pred cceeEeeecccceeeeeecccCcccceeecccCCCC----ceEEEEecCceEEEEeccCCCCCCceeeecCC-Cccceee
Confidence 999999999999877766542 23468888888886 6776555 7888997643 34433322 2223 5
Q ss_pred EEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCcc
Q 005459 398 IFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGL 475 (696)
Q Consensus 398 ~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~ 475 (696)
.|.| -..+++.+.-+.+.+||.......++-+.+.- .+|+ .+-.-..+-|+|.|..+.+--+...
T Consensus 201 ~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~---------~L~~----~~~~~M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 201 EFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFK---------GLPQ----ENTEWMGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred eecCCCceeEEeccccCCCCceeeccccchHHhhhccc---------cCcc----cchhhhheeeCCCCCeehhhhccCC
Confidence 5666 56778888888888999766554322221100 0111 1112246789999998877665555
Q ss_pred E-EEEccCCceEecCCc-cceeee---EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC--C--CCccceeE--------
Q 005459 476 I-LYDIRQKKWRVFGDI-TQEQKI---QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY--H--LDQSSLLC-------- 538 (696)
Q Consensus 476 i-~w~~~sg~w~~f~~~-~~e~~~---~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~--~--l~~~~~~~-------- 538 (696)
. +||+.+.|.-+|.-. .+..-+ ++..|++.+++-|+. .+++..|.+|..- + -...++.|
T Consensus 268 P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~t----GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~ 343 (609)
T KOG4227|consen 268 PLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVAT----GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSE 343 (609)
T ss_pred CEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeec----cCcccceEEEecCCCccccCccccCcchhhCchh
Confidence 5 999999888777543 222222 244799988887665 2566788888642 1 11111222
Q ss_pred -----------Ee-ecCCccEEEEccCCEEEEEEcCceEEEEE
Q 005459 539 -----------RK-SLLAKPIVMDVYEDYILVTYRPFDVHIFH 569 (696)
Q Consensus 539 -----------~~-~~~~~~l~~~~~~~~llv~~~d~~~~l~~ 569 (696)
.+ .++.+ +.+++....|+..+-.+.++||.
T Consensus 344 ~~i~~~~~VLrGHRSv~NQ-VRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 344 IFIEKELTVLRGHRSVPNQ-VRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred heecceeEEEecccccccc-eeecCCcceEeccchhhheeccc
Confidence 11 12332 55666655555566677888885
No 194
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=1.9e-11 Score=127.01 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=149.9
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc-----------eecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCCC--
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID-----------KELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAESA-- 289 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~~-- 289 (696)
..+.+---.+++++.++++++|++.... .+.+|..+| |+++.+.+..+.+|+-||+|+.|++..+.
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 3455666778889999999999984321 126798876 59999999999999999999999764211
Q ss_pred -------ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeeccccc-ceecccccCC
Q 005459 290 -------SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLS-SISSPIVKPN 361 (696)
Q Consensus 290 -------~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~-~v~~~~~sp~ 361 (696)
.+..++.+ |++.|+.+++|+....|++++.||+++.|....... +++...... .-.++.+--.
T Consensus 380 ~ds~dp~vl~~~l~G--------htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG--------HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccccCcchhccceec--------cccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 23345555 999999999999999999999999999999877655 555432110 0011111000
Q ss_pred CCCCccceecceeeEEEcC---CCceEEEEecC----------CcceEEEEecceeeeeccCCCCceeeeeeecCCeEEE
Q 005459 362 QDCKYEPLMSGTSMMQWDE---YGYRLYAIEEG----------SSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLV 428 (696)
Q Consensus 362 ~~~~~~~l~sg~~~~~W~~---~~~~l~~~~~~----------~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~ 428 (696)
.. ...+++. ......+ +...-+.++.. +...|+.-.-.....++-.|..+++.+...+.-
T Consensus 451 ~~--a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~---- 523 (577)
T KOG0642|consen 451 RP--AHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI---- 523 (577)
T ss_pred hh--Hhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc----
Confidence 00 0011110 1111111 11111122111 111222222256667778888888888776654
Q ss_pred EecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 429 VQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
...-..|...+.++++.|+|-+|++++.||.+ +|....+.
T Consensus 524 ----------------l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 524 ----------------LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ----------------chheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 44556788889999999999999999999999 99886653
No 195
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.29 E-value=1.3e-09 Score=106.16 Aligned_cols=233 Identities=12% Similarity=0.282 Sum_probs=142.1
Q ss_pred EEEEeCCcEEEEEccCeEEEeecCCceeeEEE-eecChHHHhhcc-cccEEEEcCCCcEEEEEecC-------cEEEEEE
Q 005459 25 IYFKVNNGLLLIASPCHIELWSSSQHKVRLGK-YKRDSESVQREG-ENLQAVWSPDTKLIAVVTSS-------LYLHIFK 95 (696)
Q Consensus 25 v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~-~~r~~~sl~~~G-~~~~v~wsPDg~~lav~t~d-------g~l~l~~ 95 (696)
++|+.|..-||++.++..+|+.++ | +.. ..|. ....| .++.+.|+ .++||..... +.|.|||
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~-P---~ke~~~r~---~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCD-P---FKESASRQ---FIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred EEEccCCceEEEEecCceEEEecC-c---hhhhhhhc---cccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 889999999999999999999997 6 111 1111 11122 12345555 4666664422 4577887
Q ss_pred EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCC
Q 005459 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSND 175 (696)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~ 175 (696)
=. .. .++..+++ ...|.++...+++|++... +.|++|....+......++
T Consensus 82 D~-k~------------~~i~el~f-----------~~~I~~V~l~r~riVvvl~-~~I~VytF~~n~k~l~~~e----- 131 (346)
T KOG2111|consen 82 DL-KE------------RCIIELSF-----------NSEIKAVKLRRDRIVVVLE-NKIYVYTFPDNPKLLHVIE----- 131 (346)
T ss_pred cc-cC------------cEEEEEEe-----------ccceeeEEEcCCeEEEEec-CeEEEEEcCCChhheeeee-----
Confidence 11 10 11111111 1246677778888888764 5677766553332211100
Q ss_pred CcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeec-----
Q 005459 176 SSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKI----- 250 (696)
Q Consensus 176 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~----- 250 (696)
+ ...+++ +. ++++..+..+...| +...|.+++.|+..-
T Consensus 132 -----t---------------------~~NPkG--lC--~~~~~~~k~~LafP-------g~k~GqvQi~dL~~~~~~~p 174 (346)
T KOG2111|consen 132 -----T---------------------RSNPKG--LC--SLCPTSNKSLLAFP-------GFKTGQVQIVDLASTKPNAP 174 (346)
T ss_pred -----c---------------------ccCCCc--eE--eecCCCCceEEEcC-------CCccceEEEEEhhhcCcCCc
Confidence 0 000111 11 12222221111222 123455666655432
Q ss_pred ceecCCCCeEE-EEEcCCCcEEEEEecCCe-EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 251 DKELGSGDAVC-ASIAPEQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 251 ~~~~~~~~~v~-v~~sp~~~~la~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
.....|...+. ++.|-+|.++|+++..|| ||+||..+ ++.+.+++.- .....|.+|+||||+.+||++++-
T Consensus 175 ~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~-g~~l~E~RRG------~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 175 SIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED-GTLLQELRRG------VDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred eEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC-CcEeeeeecC------CchheEEEEEeCCCccEEEEEcCC
Confidence 22367887775 999999999999999997 59999998 7888877641 134569999999999999999999
Q ss_pred CcEEEEEccCCe
Q 005459 329 RGLTVWSVSGCR 340 (696)
Q Consensus 329 g~v~vW~~~~~~ 340 (696)
||+.|+.+....
T Consensus 248 gTlHiF~l~~~~ 259 (346)
T KOG2111|consen 248 GTLHIFSLRDTE 259 (346)
T ss_pred CeEEEEEeecCC
Confidence 999999987643
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.2e-10 Score=125.18 Aligned_cols=207 Identities=13% Similarity=0.133 Sum_probs=133.8
Q ss_pred EEEEEeCCcEEEEeecc---CCceeeeeeecce--ecCCCC-eEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEE
Q 005459 223 LFVLYSNGQLMSCSVSK---KGLKLAEFIKIDK--ELGSGD-AVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTV 295 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d---~~~~~~~~~~~~~--~~~~~~-~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~ 295 (696)
...++|||+.++..+.+ ..+.+||...++. +..... ....+|+|||+.||+++ .+|.+.||.++..+.....+
T Consensus 208 ~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 208 SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 35588999988876643 3577888766532 211111 22489999999998875 68887777654323444555
Q ss_pred eeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCC-eeEEEeecccccceecccccCCCCCCccceecce
Q 005459 296 SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGC-RLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 296 ~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~-~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
.. +.+.+...+|+|||+.|+..+ .++...||++... .....+ ++ .. ..+.|+|++ +.++...
T Consensus 288 t~--------~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~-~~--~~~~~SpDG----~~ia~~~ 351 (429)
T PRK01742 288 TS--------GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG-RG--YSAQISADG----KTLVMIN 351 (429)
T ss_pred cc--------CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC-CC--CCccCCCCC----CEEEEEc
Confidence 55 667788999999999877655 5788999987432 112222 22 22 457899998 6554333
Q ss_pred --eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeec
Q 005459 374 --SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYIS 450 (696)
Q Consensus 374 --~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 450 (696)
.+..|+..+++...........-..+++ ++.++.++.++...+|.+...+.+ ....+.+
T Consensus 352 ~~~i~~~Dl~~g~~~~lt~~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~------------------~~~~l~~ 413 (429)
T PRK01742 352 GDNVVKQDLTSGSTEVLSSTFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR------------------FKARLPG 413 (429)
T ss_pred CCCEEEEECCCCCeEEecCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC------------------ceEEccC
Confidence 6677998877654433332222255777 888888888888888876543221 1344556
Q ss_pred CCCceEEEEEcCC
Q 005459 451 QNWPVQHVAASKD 463 (696)
Q Consensus 451 ~~~~I~~va~s~d 463 (696)
|...++..+|||-
T Consensus 414 ~~g~~~~p~wsp~ 426 (429)
T PRK01742 414 SDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCcccCCC
Confidence 7777888888874
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.27 E-value=3.4e-10 Score=123.55 Aligned_cols=265 Identities=14% Similarity=0.138 Sum_probs=162.0
Q ss_pred CCCCceEEEEEeCCc-EEEEEc-cCeEEEeecCCceeeE-EEeecChHHHhhcccccEEEEcCCCcE--EEEEecCcEEE
Q 005459 18 CPSSQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRL-GKYKRDSESVQREGENLQAVWSPDTKL--IAVVTSSLYLH 92 (696)
Q Consensus 18 ~~~~~~~v~fs~dg~-lla~~~-~~~v~iW~~~~~~~~l-~~~~r~~~sl~~~G~~~~v~wsPDg~~--lav~t~dg~l~ 92 (696)
+++....+.|+|... ++|.+. +++|.+||.++++.++ ..... ....+..+++++.|-.+-.- ++++++||.|.
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~--~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA--LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc--ccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 456677788999865 555554 7899999998554421 11111 11223467789999765544 99999999999
Q ss_pred EEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe-eeCCCeEEEEecCCcEEEEecCCccccceeecc
Q 005459 93 IFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSDGSLYSISWKGEFYGAFELVH 171 (696)
Q Consensus 93 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~ 171 (696)
.|+++--...... +..... ...... .-....+....| ..+...+++||..|.|+.-.+.+........ -
T Consensus 319 ~W~~~~l~~P~e~-------~~~~~~-~~~~~~-~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~-~ 388 (555)
T KOG1587|consen 319 SWDTDMLSLPVEG-------LLLESK-KHKGQQ-SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS-Y 388 (555)
T ss_pred eeeccccccchhh-------cccccc-cccccc-cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc-c
Confidence 9977632211000 000000 000000 000111112222 3356889999999999886666544322000 0
Q ss_pred CCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeee-ec
Q 005459 172 SSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFI-KI 250 (696)
Q Consensus 172 ~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~-~~ 250 (696)
+++ .....+...|..+..+|+ +..++.++.|-++++|... ..
T Consensus 389 ~~~---------------------------~~~~~h~g~v~~v~~nPF----------~~k~fls~gDW~vriWs~~~~~ 431 (555)
T KOG1587|consen 389 KGH---------------------------STFITHIGPVYAVSRNPF----------YPKNFLSVGDWTVRIWSEDVIA 431 (555)
T ss_pred ccc---------------------------ccccccCcceEeeecCCC----------ccceeeeeccceeEeccccCCC
Confidence 000 012345666777775554 4444445558889999865 32
Q ss_pred cee---cCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 251 DKE---LGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 251 ~~~---~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
..+ ..+.+.+. ++|||- -..+|++..||.+.+||+... .+++.+.+. +....+.+.|+++|+.|+.
T Consensus 432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--------cccccceeecCCCCcEEEE
Confidence 222 34556566 999995 578899999999999998752 234444444 5566778899999999999
Q ss_pred EEcCCcEEEEEccCC
Q 005459 325 GWKSRGLTVWSVSGC 339 (696)
Q Consensus 325 g~~Dg~v~vW~~~~~ 339 (696)
|...|++.+|++...
T Consensus 504 Gd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 504 GDANGTTHILKLSES 518 (555)
T ss_pred ecCCCcEEEEEcCch
Confidence 999999999998643
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.26 E-value=6.9e-10 Score=110.18 Aligned_cols=230 Identities=15% Similarity=0.224 Sum_probs=150.0
Q ss_pred eEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcc-cccEEEEcCCCcEEEEEecCc--EEEEEEEEec
Q 005459 23 QIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREG-ENLQAVWSPDTKLIAVVTSSL--YLHIFKVQIT 99 (696)
Q Consensus 23 ~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G-~~~~v~wsPDg~~lav~t~dg--~l~l~~l~~~ 99 (696)
..+.|+.|..+|++++.+.-.++..+ +-.... +....| .++...|| ++.+|+.+.+. .+++++....
T Consensus 9 ~~~~~Nqd~~~lsvGs~~Gyk~~~~~-~~~k~~-------~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 9 NFIGFNQDSTLLSVGSKDGYKIFSCS-PFEKCF-------SKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred eeeeeccceeEEEccCCCceeEEecC-chHHhh-------cccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccC
Confidence 33558888999999999999999986 533211 111222 34567787 56777766543 3777777532
Q ss_pred CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCccc
Q 005459 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVA 179 (696)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~ 179 (696)
.. +-.+ . + ..+|.++..++++|+++..+. |++++......... +
T Consensus 79 ~~-------------ICe~----~----f---pt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhT-----------I 122 (391)
T KOG2110|consen 79 TT-------------ICEI----F----F---PTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHT-----------I 122 (391)
T ss_pred ce-------------EEEE----e----c---CCceEEEEEccceEEEEEccc-EEEEecccceeehh-----------h
Confidence 21 0000 0 0 124567777889999988766 88877665433211 1
Q ss_pred ccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe--CCcEEEEee--ccCCceeeeeeecce---
Q 005459 180 ALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS--NGQLMSCSV--SKKGLKLAEFIKIDK--- 252 (696)
Q Consensus 180 ~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~--dG~~~~~~~--~d~~~~~~~~~~~~~--- 252 (696)
..+ .+...+.+++++ ++.+++.-+ ..+.+.+||..+.+.
T Consensus 123 ~t~----------------------------------~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 123 ETT----------------------------------PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred hcc----------------------------------CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 111 011112222222 222333221 356788888876543
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeE-EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVV-ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v-~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
+..|.+.+. ++|||+|.+||++++.|+| |||.+.+ ++.+..++.-- ..-.|.+|+|+||+++|++.+..++
T Consensus 169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~-G~kl~eFRRG~------~~~~IySL~Fs~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPE-GQKLYEFRRGT------YPVSIYSLSFSPDSQFLAASSNTET 241 (391)
T ss_pred EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCC-ccEeeeeeCCc------eeeEEEEEEECCCCCeEEEecCCCe
Confidence 367998887 9999999999999999975 9999988 77777776511 1245889999999999999999999
Q ss_pred EEEEEccCC
Q 005459 331 LTVWSVSGC 339 (696)
Q Consensus 331 v~vW~~~~~ 339 (696)
|.++.+...
T Consensus 242 VHiFKL~~~ 250 (391)
T KOG2110|consen 242 VHIFKLEKV 250 (391)
T ss_pred EEEEEeccc
Confidence 999988754
No 199
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.24 E-value=6e-10 Score=106.91 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=155.7
Q ss_pred CCceEEEEEeCC-cEEEEEc----c----CeEEEeecCCceeeEEEe-ecChHHH--hhcccccEEEEcCCCcEEEEEec
Q 005459 20 SSQQIIYFKVNN-GLLLIAS----P----CHIELWSSSQHKVRLGKY-KRDSESV--QREGENLQAVWSPDTKLIAVVTS 87 (696)
Q Consensus 20 ~~~~~v~fs~dg-~lla~~~----~----~~v~iW~~~~~~~~l~~~-~r~~~sl--~~~G~~~~v~wsPDg~~lav~t~ 87 (696)
+....++-+|-+ ++||++. + ....||...++..+-... -.....| +..|.+.++.|-|++..||.-+
T Consensus 64 gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~- 142 (370)
T KOG1007|consen 64 GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD- 142 (370)
T ss_pred cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-
Confidence 455556666654 5788772 2 257899985332220000 0011112 3468899999999999999876
Q ss_pred CcEEEEEEEEecCccccc-CCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEEEEecCCcEEEEecCCcccc
Q 005459 88 SLYLHIFKVQITEKSIQI-GGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSISWKGEFYG 165 (696)
Q Consensus 88 dg~l~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~llv~t~~g~i~~~~w~~~~~~ 165 (696)
+..|.+|+++.+.+.... ...... ..+..+ ..+ ..++ .+...+.++.+++++.|+..... .
T Consensus 143 dn~i~l~~l~ess~~vaev~ss~s~---------e~~~~f-tsg------~WspHHdgnqv~tt~d~tl~~~D~RT~~-~ 205 (370)
T KOG1007|consen 143 DNNIVLWSLDESSKIVAEVLSSESA---------EMRHSF-TSG------AWSPHHDGNQVATTSDSTLQFWDLRTMK-K 205 (370)
T ss_pred cCceEEEEcccCcchheeecccccc---------ccccee-ccc------ccCCCCccceEEEeCCCcEEEEEccchh-h
Confidence 788999999876642211 000000 000000 011 2233 23456777888999875433111 1
Q ss_pred ceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCcee
Q 005459 166 AFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKL 244 (696)
Q Consensus 166 ~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~ 244 (696)
... .-..|...+++|.|. |+-+ +++++..|+.+++
T Consensus 206 ~~s----------------------------------I~dAHgq~vrdlDfN----------pnkq~~lvt~gDdgyvri 241 (370)
T KOG1007|consen 206 NNS----------------------------------IEDAHGQRVRDLDFN----------PNKQHILVTCGDDGYVRI 241 (370)
T ss_pred hcc----------------------------------hhhhhcceeeeccCC----------CCceEEEEEcCCCccEEE
Confidence 110 011344557777754 4444 4566678899999
Q ss_pred eeeeecc----eecCCCCeEE-EEEcCC-CcEEEEEecCCeEEEEEccCCCce--------------------eeEEeec
Q 005459 245 AEFIKID----KELGSGDAVC-ASIAPE-QQILAVGTRRGVVELYDLAESASL--------------------IRTVSLY 298 (696)
Q Consensus 245 ~~~~~~~----~~~~~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~--------------------~~~~~~~ 298 (696)
||.+..+ .+.+|...+. |.|||. .++|.+|+.|..|.+|........ .+.+...
T Consensus 242 WD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg 321 (370)
T KOG1007|consen 242 WDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG 321 (370)
T ss_pred EeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc
Confidence 9987653 2378999998 999995 678889999999999987541100 0001110
Q ss_pred cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccC
Q 005459 299 DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~ 338 (696)
.+..-.+|...|.+++||. |-=.+|+-+.||.+.|=++..
T Consensus 322 ~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 322 QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 1111236999999999986 777889999999987766643
No 200
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=1.3e-08 Score=99.59 Aligned_cols=360 Identities=17% Similarity=0.174 Sum_probs=191.3
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEE-EecCcEEEEEEEEec
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAV-VTSSLYLHIFKVQIT 99 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav-~t~dg~l~l~~l~~~ 99 (696)
..+...|||+|+++|++.+..+.|=|.+ . .++..+- .. -..+.-+.|+-|+-.+.. ...++.+.+|++...
T Consensus 10 ~~~~c~fSp~g~yiAs~~~yrlviRd~~-t-lq~~qlf---~c---ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRYRLVIRDSE-T-LQLHQLF---LC---LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred cCCceeECCCCCeeeeeeeeEEEEeccc-h-hhHHHHH---HH---HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 4456789999999999998888887774 1 1111110 01 245678999999987665 556779999999632
Q ss_pred CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcc
Q 005459 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
+ |.. .+.+ +....+..+.++|+.+|+..+. +-.|.+|+.......
T Consensus 82 e---------------w~c--kIde----g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~------------- 127 (447)
T KOG4497|consen 82 E---------------WYC--KIDE----GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY------------- 127 (447)
T ss_pred e---------------eEE--Eecc----CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-------------
Confidence 2 100 1111 1111233467888877776543 345555443322111
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----- 253 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----- 253 (696)
.+.-.+..+. -.+|.+||++.+..+........++...+.|
T Consensus 128 ------------------------~~~~pK~~~k----------g~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~ 173 (447)
T KOG4497|consen 128 ------------------------LLPHPKTNVK----------GYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKE 173 (447)
T ss_pred ------------------------EecccccCce----------eEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHh
Confidence 0000011122 2458899998887665422211121111111
Q ss_pred --cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 254 --LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 254 --~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
....+.+-+.|+|||+.||+ ||--- + ..+-..+ -.-.+..++|||-++.||+|+.|+.+
T Consensus 174 f~~dT~DltgieWsPdg~~laV---------wd~~L--e--ykv~aYe------~~lG~k~v~wsP~~qflavGsyD~~l 234 (447)
T KOG4497|consen 174 FKLDTIDLTGIEWSPDGNWLAV---------WDNVL--E--YKVYAYE------RGLGLKFVEWSPCNQFLAVGSYDQML 234 (447)
T ss_pred cCCCcccccCceECCCCcEEEE---------ecchh--h--heeeeee------eccceeEEEeccccceEEeeccchhh
Confidence 12234444999999998875 44211 0 0000100 12358999999999999999999999
Q ss_pred EEEEccCCeeEEEeecccccce--------------------ecccccCCCCCCccceecceeeEEEcCC--CceE----
Q 005459 332 TVWSVSGCRLMSTIRQISLSSI--------------------SSPIVKPNQDCKYEPLMSGTSMMQWDEY--GYRL---- 385 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v--------------------~~~~~sp~~~~~~~~l~sg~~~~~W~~~--~~~l---- 385 (696)
|+-+-.+-+.+..+- | ..++ .++.|-|... ....|... .|+.
T Consensus 235 rvlnh~tWk~f~efl-h-l~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~----------~a~~~~~se~~YE~~~~p 302 (447)
T KOG4497|consen 235 RVLNHFTWKPFGEFL-H-LCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDL----------EAHIWEESETIYEQQMTP 302 (447)
T ss_pred hhhceeeeeehhhhc-c-chhccCchhhhhhhhhcchhhhcccccccCCCcc----------ccCccccchhhhhhhhcc
Confidence 885543322211111 0 1111 1222222210 11122111 0111
Q ss_pred --EEEecC------Ccc--eEEEEec-ceeeeeccCCC--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCC
Q 005459 386 --YAIEEG------SSE--RVLIFSF-GKCCLNRGVSG--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQN 452 (696)
Q Consensus 386 --~~~~~~------~~~--~v~~~~~-~~~~~s~~~d~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 452 (696)
+...+. ... ..++|+. ...++|.+... .+-+||+..-+ ..+.+-..
T Consensus 303 v~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------------l~avLiQk 361 (447)
T KOG4497|consen 303 VKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------------LHAVLIQK 361 (447)
T ss_pred eeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---------------------hhhhhhhc
Confidence 111111 111 1266666 55666665544 34455543322 12334456
Q ss_pred CceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEE
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVC 512 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~ 512 (696)
.||++..|+|.-..|++....... +|....- ...+.. ...|.+..++|. ++.++.+
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~--~~V~vP--~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP--RVVGVP--KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCc--eEEecC--CCCceeeeEEecCCCcEEEEE
Confidence 799999999998887776655556 8877542 222332 234889999997 5566655
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=6.7e-11 Score=122.22 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=117.8
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (696)
|+|-|+|++|+.||..||+|++|-.+.|||.+..++++.+...|...|.++.|-|.. +.+.++||. .++++|...
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEeccc
Confidence 999999999999999999999999999999999999999987668899999998864 447788876 788888763
Q ss_pred c----------eEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 383 Y----------RLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 383 ~----------~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
. +......-|.++| ++..+ -..+.+++.||+++-+|+......- ...+.+ +....|
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~---p~~~~~-------~~l~ny 196 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN---PDEDCP-------SILVNY 196 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC---cccccc-------HHHHHh
Confidence 1 1122223456666 44444 3677899999999988876533200 000000 001122
Q ss_pred ecCCCceEEEEEcCCC-CEEEEEeCCccE-EEEc
Q 005459 449 ISQNWPVQHVAASKDG-MFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG-~~la~ag~dG~i-~w~~ 480 (696)
...--...++.+||.. .|||+||.|-++ +||.
T Consensus 197 ~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred chhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 2222347899999965 589999999999 9995
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=7.2e-10 Score=122.73 Aligned_cols=282 Identities=15% Similarity=0.103 Sum_probs=184.3
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccC
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~ 338 (696)
.+-|+|=...++++...-.|+|||.+. ++.+..+..... -...|+.|.+-. |-..|.+|+.||.||||+-+-
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~-----~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAF-----PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCC-----CCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 378888888899998888999999987 666555544221 234689998865 667899999999999997532
Q ss_pred -----CeeEEEeec---cccc-ceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCC-cceEEEEec----c
Q 005459 339 -----CRLMSTIRQ---ISLS-SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGS-SERVLIFSF----G 402 (696)
Q Consensus 339 -----~~~~~~l~~---~~~~-~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~-~~~v~~~~~----~ 402 (696)
.+++....+ +-.. .-+.+.++=. .++...+.+|. .+++||.+...+....... ...+.+++. +
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWq-Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~g 1221 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQ-QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHG 1221 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehh-hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCC
Confidence 233332221 1000 0000111100 12336677774 8999999988777765433 334566665 7
Q ss_pred eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCc--eEEEEEcCCCCE-EEEEeCCccE-EE
Q 005459 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWP--VQHVAASKDGMF-LAVAGLHGLI-LY 478 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--I~~va~s~dG~~-la~ag~dG~i-~w 478 (696)
..++.|..||+++++|......+- ....|..|+.+ |..+.+-+.|-- |++|+.+|.| +|
T Consensus 1222 n~i~AGfaDGsvRvyD~R~a~~ds-----------------~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1222 NIIAAGFADGSVRVYDRRMAPPDS-----------------LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred ceEEEeecCCceEEeecccCCccc-----------------cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 889999999999999977655421 24577888887 999999998865 9999999999 99
Q ss_pred EccCCceEecCCccceeee--EEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-CCCc------cceeEEeecCCccEEE
Q 005459 479 DIRQKKWRVFGDITQEQKI--QSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-HLDQ------SSLLCRKSLLAKPIVM 549 (696)
Q Consensus 479 ~~~sg~w~~f~~~~~e~~~--~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~l~~------~~~~~~~~~~~~~l~~ 549 (696)
|++...-..|-+...+.++ ..+.|.-+.+--+.||. +. .+|++|+.. .+.+ .++..+. ...--+.|
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsG---s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~-gs~scL~F 1359 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASG---SA-QLIKIYSLSGEQLNIIKYNPGFMGQRI-GSVSCLAF 1359 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeec---Cc-ceEEEEecChhhhcccccCcccccCcC-CCcceeee
Confidence 9987432333322222221 25567777655444422 22 789999986 2222 1222222 11123566
Q ss_pred EccCCEEEEEEcCceEEEEEEE
Q 005459 550 DVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 550 ~~~~~~llv~~~d~~~~l~~~~ 571 (696)
.+..-.++++++|+.|.||..+
T Consensus 1360 HP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cchhHhhhhccCCceEEEeecC
Confidence 6777778889999999999765
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.21 E-value=5.7e-10 Score=108.71 Aligned_cols=236 Identities=15% Similarity=0.179 Sum_probs=161.2
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCC--ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESA--SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
...+|-+||+|...+|++.++..|.||...... +..++++. |...|+.+.|+|.++.|++++.|+.-.||
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~--------Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE--------HDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh--------hCcceeEEeecCCCCceeEccCCCCcccc
Confidence 455679999999999999999999999987622 45667777 99999999999999999999999999999
Q ss_pred Ec-cCCeeEE--EeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEe----cCCcceEEEEec---
Q 005459 335 SV-SGCRLMS--TIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIE----EGSSERVLIFSF--- 401 (696)
Q Consensus 335 ~~-~~~~~~~--~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~----~~~~~~v~~~~~--- 401 (696)
.. .++.-.. .|..+ ...++++.++|.+ ..++.|+ .+-+|..++..-+-+. ..+...|..++.
T Consensus 83 ~~~~~~~WkptlvLlRi-NrAAt~V~WsP~e----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRI-NRAATCVKWSPKE----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred ccCCCCeeccceeEEEe-ccceeeEeecCcC----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 98 5654332 23334 5668999999998 7788776 5666766665555332 234556666655
Q ss_pred ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc-ceeE----EeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE
Q 005459 402 GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE-LKIL----HLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~-~~w~----~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i 476 (696)
.-.+++|+.|+..+++.. |+-+-++.+. .-|- ..++-..|....+.|..+.|||+|..||-.+.|+.+
T Consensus 158 nVLlaaGs~D~k~rVfSa-------yIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 158 NVLLAAGSTDGKCRVFSA-------YIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred cceecccccCcceeEEEE-------eeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 556778899998887653 2333233332 1231 111222343456679999999999999999999999
Q ss_pred -EEEccCCceEecCCccceeeeEEEeEeeeC-cEEEEEEe
Q 005459 477 -LYDIRQKKWRVFGDITQEQKIQSKGLLWLG-KIIVVCNY 514 (696)
Q Consensus 477 -~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~-~~lv~~~~ 514 (696)
+=|....+-+. ....+++ ..-..+.|-. +.+|+++|
T Consensus 231 ~~~da~~p~~~v-~~~~~~~-lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 231 SFVDAAGPSERV-QSVATAQ-LPLLSVSWISENSVVAAGY 268 (361)
T ss_pred EEeecCCCchhc-cchhhcc-CCceeeEeecCCceeecCC
Confidence 66665543111 1112222 2344667753 44555433
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.21 E-value=3e-10 Score=107.77 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=103.8
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccC--CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDW--GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~--~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
-+++.|.++|.|.+||+.+ +..+-.++..-. -....|.++|.++.|.+.-..=++|+.+..+.+|++.......+++
T Consensus 166 ~lllaGyEsghvv~wd~S~-~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLST-GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred EEEEEeccCCeEEEEEccC-CceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 3678899999999999988 422222221110 1122499999999999866666788888889999886432111111
Q ss_pred cccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCe
Q 005459 347 QISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDR 425 (696)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~ 425 (696)
.. ..++...-.=+.+.+ +|.++|++.|+.++++...+...
T Consensus 245 ~e--------------------------------------~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p- 285 (323)
T KOG0322|consen 245 KE--------------------------------------ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP- 285 (323)
T ss_pred ce--------------------------------------EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-
Confidence 10 000000000133444 67788999999998877555443
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
...+.-|...|.++||+||...+|.||.|+.| +|++
T Consensus 286 -------------------LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 -------------------LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -------------------hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 55666788999999999999999999999999 9985
No 205
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.20 E-value=1.7e-09 Score=104.33 Aligned_cols=111 Identities=19% Similarity=0.286 Sum_probs=76.7
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEee--ccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEec---CCeEEEE
Q 005459 210 AIIWLELCLPMRLLFVLYSNGQLMSCSV--SKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTR---RGVVELY 283 (696)
Q Consensus 210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~---dg~v~vw 283 (696)
.|.+++| +|+|+.+++.. .+..+.+||........-+.... .+.|||+|++||+|+. .|.|.+|
T Consensus 61 ~I~~~~W----------sP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 61 PIHDVAW----------SPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred ceEEEEE----------CcCCCEEEEEEccCCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 4777664 55565544332 34577888875222122223334 4999999999999874 4779999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc------CCcEEEEEccCCee
Q 005459 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK------SRGLTVWSVSGCRL 341 (696)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~------Dg~v~vW~~~~~~~ 341 (696)
|+++ .+.+.+.. |. .+..++|||||++|+++.. |++++||+..|..+
T Consensus 131 d~~~-~~~i~~~~---------~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 131 DVRK-KKKISTFE---------HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred ECCC-CEEeeccc---------cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 9986 55554433 33 4789999999999999864 89999999876643
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.19 E-value=2.8e-09 Score=116.29 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=131.6
Q ss_pred CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccCCCCCCCceee
Q 005459 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIGGKQPSGLFFI 116 (696)
Q Consensus 40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~~~~~~~~~~~ 116 (696)
..|.+||.. ... ...+.+ ..+.+...+|||||+.||..+. +..|.+|++..+.......
T Consensus 179 ~~l~~~d~d-g~~-~~~lt~------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~---------- 240 (429)
T PRK03629 179 YELRVSDYD-GYN-QFVVHR------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS---------- 240 (429)
T ss_pred eeEEEEcCC-CCC-CEEeec------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC----------
Confidence 368888874 221 111222 1245678999999999997653 3467888876543211100
Q ss_pred eeeEEEeeeccccccceeEEEeeeCCCeEEEE-ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccC
Q 005459 117 KISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG-LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDT 195 (696)
Q Consensus 117 ~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~-t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~ 195 (696)
..+.. .-..+++|++.|+.. ..+|...++.|+.+......+
T Consensus 241 -----------~~~~~-~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-------------------------- 282 (429)
T PRK03629 241 -----------FPRHN-GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-------------------------- 282 (429)
T ss_pred -----------CCCCc-CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc--------------------------
Confidence 01111 113678889888875 345543333344322211100
Q ss_pred CCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeecc-CCceeee--eeecc--eecCCCCeE-EEEEcCCCc
Q 005459 196 SGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSK-KGLKLAE--FIKID--KELGSGDAV-CASIAPEQQ 269 (696)
Q Consensus 196 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d-~~~~~~~--~~~~~--~~~~~~~~v-~v~~sp~~~ 269 (696)
......+. ...++|||+.++..+.+ +..++|. ...++ .+..+.... ..+|+|||+
T Consensus 283 ---------t~~~~~~~----------~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~ 343 (429)
T PRK03629 283 ---------TDGRSNNT----------EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGK 343 (429)
T ss_pred ---------cCCCCCcC----------ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCC
Confidence 00011111 24578888877766653 4455553 32221 122222223 388999999
Q ss_pred EEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc---EEEEEccCCeeEE
Q 005459 270 ILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMS 343 (696)
Q Consensus 270 ~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~---v~vW~~~~~~~~~ 343 (696)
.||..+.+ ..|.+||+++ +. .+.+.. .......+|||||+.|+.++.|++ +.++++.++ ...
T Consensus 344 ~Ia~~~~~~g~~~I~~~dl~~-g~-~~~Lt~---------~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~~ 411 (429)
T PRK03629 344 FMVMVSSNGGQQHIAKQDLAT-GG-VQVLTD---------TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FKA 411 (429)
T ss_pred EEEEEEccCCCceEEEEECCC-CC-eEEeCC---------CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-CeE
Confidence 99887654 3577888876 33 333332 112346789999999999998876 667777554 455
Q ss_pred EeecccccceecccccCC
Q 005459 344 TIRQISLSSISSPIVKPN 361 (696)
Q Consensus 344 ~l~~~~~~~v~~~~~sp~ 361 (696)
.+.++ ...+..++|+|.
T Consensus 412 ~l~~~-~~~~~~p~Wsp~ 428 (429)
T PRK03629 412 RLPAT-DGQVKFPAWSPY 428 (429)
T ss_pred ECccC-CCCcCCcccCCC
Confidence 66655 456777888773
No 207
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.17 E-value=1e-09 Score=107.01 Aligned_cols=130 Identities=13% Similarity=0.201 Sum_probs=89.3
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCceeeEEe
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
+.++.|+|+|+.+++.+.- .+-+-|..+.+.. ......+.+.|..|...+. ....|+.|.+|++.. .+-.-.+.
T Consensus 11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-pew~ckId 88 (447)
T KOG4497|consen 11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-PEWYCKID 88 (447)
T ss_pred CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeec-ceeEEEec
Confidence 3467899999999977654 3444454443321 1123455588988876655 567899999999976 44444444
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeE-EEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAF-AVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~l-asg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
. -..++.+++|||||+.| .+..-|-.|.||++.+..... + .|-...+..++|+|++
T Consensus 89 e--------g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~-~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 89 E--------GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L-PHPKTNVKGYAFHPDG 145 (447)
T ss_pred c--------CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e-cccccCceeEEECCCC
Confidence 4 56789999999999655 556668899999998775432 2 2324456788899998
No 208
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.4e-09 Score=106.50 Aligned_cols=251 Identities=12% Similarity=0.096 Sum_probs=153.2
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee--cCCC---CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSG---DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~---~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
|....+.++++..++++...|+.+.+.+ ..|+ ++|. +..+|..+.+|+.+.+|.|.+||.++...++..+-..
T Consensus 113 F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A- 191 (609)
T KOG4227|consen 113 FDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPA- 191 (609)
T ss_pred EccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeec-
Confidence 3334444555555555555555544433 2333 3777 9999999999999999999999998733333322221
Q ss_pred CCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCee-------EEEeecccccceecccccCCCCCCccceec
Q 005459 300 WGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL-------MSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~-------~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
+......++.|.| .-.+|++.+..+++-+||...... ...|+.. ...-.++.|+|++ ..+++
T Consensus 192 -----N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~-~~~~M~~~~~~~G----~Q~ms 261 (609)
T KOG4227|consen 192 -----NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQE-NTEWMGSLWSPSG----NQFMS 261 (609)
T ss_pred -----CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCccc-chhhhheeeCCCC----Ceehh
Confidence 1344577889999 566888999999999999853210 1112211 1112456778877 44442
Q ss_pred c---eeeEEEcCCCceEEEEecCCcc-------eEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEE-ecCCCCcce
Q 005459 372 G---TSMMQWDEYGYRLYAIEEGSSE-------RVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVV-QSEDTDELK 438 (696)
Q Consensus 372 g---~~~~~W~~~~~~l~~~~~~~~~-------~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~~~ 438 (696)
= -.-+.++.-..++...-..|.. .+-...| ...+++|+.+-.+++|.+....+.--+. -|.+..++.
T Consensus 262 iRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 262 IRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred hhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCc
Confidence 1 1344566655555444333322 1222233 4568899999999999876544422111 122222211
Q ss_pred e--EEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459 439 I--LHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 439 w--~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
- -.-.-...+.+|..-+..+.|+|....|++.|-...+ +|+-...-|..
T Consensus 342 ~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~P~~~ 393 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRLPWSY 393 (609)
T ss_pred hhheecceeEEEecccccccceeecCCcceEeccchhhheeccccccCCccc
Confidence 0 0111233567999999999999999999999999999 99877666653
No 209
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.16 E-value=3.1e-11 Score=130.21 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=159.1
Q ss_pred eecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 252 KELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 252 ~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
.+.+|..+|. +.|...|++|.+|+.|..|+||..++ ..+.....+ |.+.++.++.+.....+|+++.|..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et-~~~lAs~rG--------hs~ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET-ARCLASCRG--------HSGDITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccc-hhhhccCCC--------CccccchhccchhhhhhhhcccCce
Confidence 3478998886 88999999999999999999999887 888888888 9999999999999999999999999
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe---c-CCcceEEEEec---
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE---E-GSSERVLIFSF--- 401 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~---~-~~~~~v~~~~~--- 401 (696)
|++|-+..+.++..|+|| ++.|++++|+|-. .++. ++.+|+.+=.-+...- . ...+.+..+-+
T Consensus 256 IrvWrl~~~~pvsvLrgh-tgavtaiafsP~~-------sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGH-TGAVTAIAFSPRA-------SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred EEEEecCCCchHHHHhcc-ccceeeeccCccc-------cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 999999999999999999 8899999999974 1222 8899998711111110 0 01122333333
Q ss_pred ceeeeeccCCCCceeeeeeecC---CeE-EEEecCCCCc-----------ceeE--EeecCeeeecCCCceEEEEEcCCC
Q 005459 402 GKCCLNRGVSGMTYARQVIYGE---DRL-LVVQSEDTDE-----------LKIL--HLNLPVSYISQNWPVQHVAASKDG 464 (696)
Q Consensus 402 ~~~~~s~~~d~~~~~w~~~~~~---~~~-~~~~~~~~~~-----------~~w~--~~~~~~~~~~~~~~I~~va~s~dG 464 (696)
+...+|++.|+....|.+.+-. ..+ ++....+... ..|. ..++.....+|..++..+.+.|-.
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn 407 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN 407 (1113)
T ss_pred ccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence 6678899999988887765432 222 2333333331 1232 223334455788899999999965
Q ss_pred C-EEEEEeCCccE-EEEccCC
Q 005459 465 M-FLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 465 ~-~la~ag~dG~i-~w~~~sg 483 (696)
. ...+||.||.. +||+-.|
T Consensus 408 ~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 408 PRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred cHhhhhccCCCceEeeecccC
Confidence 5 55689999999 9998665
No 210
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.16 E-value=3.4e-10 Score=118.71 Aligned_cols=133 Identities=14% Similarity=0.258 Sum_probs=108.6
Q ss_pred cCCceeeeeeecceec-------CCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCC------ceeeEEeeccCCCC
Q 005459 239 KKGLKLAEFIKIDKEL-------GSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESA------SLIRTVSLYDWGYS 303 (696)
Q Consensus 239 d~~~~~~~~~~~~~~~-------~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~------~~~~~~~~~~~~~~ 303 (696)
.+.+-++++..+.++. .....+. +.|+| |...||+|+.||.|++|.+..++ .+...+..
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~------ 675 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTI------ 675 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeec------
Confidence 4556677766654441 2344566 99999 88999999999999999998643 23345666
Q ss_pred CCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEc
Q 005459 304 MDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWD 379 (696)
Q Consensus 304 ~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~ 379 (696)
|...|.++.|.| -...||+++.|-+|++||+..+...+.|.+| ++.|..++|||+| +.+++-+ +++++.
T Consensus 676 --h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH-tdqIf~~AWSpdG----r~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 676 --HGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH-TDQIFGIAWSPDG----RRIATVCKDGTLRVYE 748 (1012)
T ss_pred --ccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC-cCceeEEEECCCC----cceeeeecCceEEEeC
Confidence 999999999999 5669999999999999999999999999999 8889999999999 8888766 888998
Q ss_pred CCCce
Q 005459 380 EYGYR 384 (696)
Q Consensus 380 ~~~~~ 384 (696)
+..++
T Consensus 749 Prs~e 753 (1012)
T KOG1445|consen 749 PRSRE 753 (1012)
T ss_pred CCCCC
Confidence 87654
No 211
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=8.1e-07 Score=104.55 Aligned_cols=438 Identities=15% Similarity=0.173 Sum_probs=211.6
Q ss_pred hcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCC
Q 005459 66 REGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNK 143 (696)
Q Consensus 66 ~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~ 143 (696)
..+.++++.+-+|...+++++.+|.|.++..+...... .+ +. ++.-+..| .+++||.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~----------~~-------E~---VG~vd~GI~a~~WSPD~E 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED----------EI-------EI---VGSVDSGILAASWSPDEE 133 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc----------ee-------EE---EEEEcCcEEEEEECCCcC
Confidence 34788999999999999999999999998554211100 00 00 01112233 35688889
Q ss_pred eEEEEecCCcEEEEecCCccccceeeccCCCC-Ccccccccc-cCCCCcccccCCCcc----ccCCcCCCcccEEEEEEc
Q 005459 144 HMLLGLSDGSLYSISWKGEFYGAFELVHSSND-SSVAALSHH-FPSNGLASVDTSGAF----VSDHKFPISSAIIWLELC 217 (696)
Q Consensus 144 ~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~-~~~~~~~~~-s~~~~l~~~~~~~~~----~~~~~~~~~~~i~~~~~~ 217 (696)
.+++.|.+|.+..+.-+-+...+..++..... +..+. +.- ...-|+- +..+.. .+.+..+ +.....+. .
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs-VGWGkKeTQF~--Gs~gK~aa~~~~~p~~~-~~d~~~~s-~ 208 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVS-VGWGKKETQFH--GSAGKAAARQLRDPTVP-KVDEGKLS-W 208 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceee-eccCcccCccC--cchhhhhhhhccCCCCC-ccccCccc-c
Confidence 99999999999887544333222222110000 00000 000 0000110 000000 0000000 00001111 1
Q ss_pred cCcceEEEEEeCCcEEEEeec------cCCceeeeeeeccee--cCCCCeE--EEEEcCCCcEEEEEec---CCeEEEEE
Q 005459 218 LPMRLLFVLYSNGQLMSCSVS------KKGLKLAEFIKIDKE--LGSGDAV--CASIAPEQQILAVGTR---RGVVELYD 284 (696)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~------d~~~~~~~~~~~~~~--~~~~~~v--~v~~sp~~~~la~g~~---dg~v~vw~ 284 (696)
.+....+.+-.||+++++.+- ...+++|+-. ++.. ....+.. +++|.|.|++||+... .-.|.+|.
T Consensus 209 dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 209 DDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred CCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe
Confidence 122334556678888887763 2456778754 2211 1111222 3899999999999875 34566666
Q ss_pred ccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe--eEEEeecccccceecccccCCC
Q 005459 285 LAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR--LMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~--~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
-+ |..-..+... . ......|..|+|++|+..||.--.| .|.+|...+.+ +.+.+.-.....
T Consensus 288 rN--GLrhgeF~l~---~-~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~---------- 350 (928)
T PF04762_consen 288 RN--GLRHGEFTLR---F-DPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSES---------- 350 (928)
T ss_pred cC--CcEeeeEecC---C-CCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCC----------
Confidence 33 3222223321 1 0145679999999999999997765 49999987765 222222110010
Q ss_pred CCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecc-eeeeecc---CCCCceeeeeeecCCeEEEEecCCCCcce
Q 005459 363 DCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFG-KCCLNRG---VSGMTYARQVIYGEDRLLVVQSEDTDELK 438 (696)
Q Consensus 363 ~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~-~~~~s~~---~d~~~~~w~~~~~~~~~~~~~~~~~~~~~ 438 (696)
.....|+++....+..... .+.+..+.+. ....+.+ .|.... .--.+.+++++.= .
T Consensus 351 ----------~~~~~Wdpe~p~~L~v~t~-~g~~~~~~~~~~v~~s~~~~~~D~g~v---aVIDG~~lllTpf------~ 410 (928)
T PF04762_consen 351 ----------VNFVKWDPEKPLRLHVLTS-NGQYEIYDFAWDVSRSPGSSPNDNGTV---AVIDGNKLLLTPF------R 410 (928)
T ss_pred ----------CCceEECCCCCCEEEEEec-CCcEEEEEEEEEEEecCCCCccCceEE---EEEeCCeEEEecc------c
Confidence 1225677765443333322 1333333331 1111100 011110 0111122222110 0
Q ss_pred eEEeecCee--eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc-eE----ecCCc---------ccee-eeEEE
Q 005459 439 ILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK-WR----VFGDI---------TQEQ-KIQSK 500 (696)
Q Consensus 439 w~~~~~~~~--~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~-w~----~f~~~---------~~e~-~~~v~ 500 (696)
...+..|-. ...-..+|..++|++++..+|+-..||.+ +|....+. |. .+... ..+. ....+
T Consensus 411 ~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (928)
T PF04762_consen 411 RAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLR 490 (928)
T ss_pred ccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEE
Confidence 011111211 12345689999999999999999999988 99854432 21 01000 0111 12256
Q ss_pred eEeeeCcEEEEEEeecCCCeEEEEEeeCCCCC-ccceeEEeecCCccEEEEccCCE--EEEEEcCceEE
Q 005459 501 GLLWLGKIIVVCNYIDSSNTYELLFYPRYHLD-QSSLLCRKSLLAKPIVMDVYEDY--ILVTYRPFDVH 566 (696)
Q Consensus 501 ~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~--llv~~~d~~~~ 566 (696)
.++|.++..+.+..........+.+++..... ..........+.....+...++. +++-..+|.+.
T Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~ 559 (928)
T PF04762_consen 491 QLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVF 559 (928)
T ss_pred EEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEE
Confidence 88997544333222222245677777764222 22233334445544444433332 45555566554
No 212
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.11 E-value=3.7e-09 Score=115.52 Aligned_cols=240 Identities=14% Similarity=0.127 Sum_probs=160.6
Q ss_pred ceEEEEEe-CCcEEEEeeccCCceeeeeeeccee---------cCCCCeEE-EEEcCC--CcEEEEEecCCeEEEEEccC
Q 005459 221 RLLFVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE---------LGSGDAVC-ASIAPE--QQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 221 ~~~~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~---------~~~~~~v~-v~~sp~--~~~la~g~~dg~v~vw~~~~ 287 (696)
..++.|.| +..+++.+..+|.+-+||...+... ..|.+++. +.|-.+ +.-+++++.||.|..|+++.
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~ 324 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDM 324 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccc
Confidence 34444555 4566777778888888998765431 34677766 666554 34599999999999999876
Q ss_pred CCceeeEEeec---cCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCee--------EEEeecccccceec
Q 005459 288 SASLIRTVSLY---DWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRL--------MSTIRQISLSSISS 355 (696)
Q Consensus 288 ~~~~~~~~~~~---~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~--------~~~l~~~~~~~v~~ 355 (696)
-..+...+... +.+....-...+++++|.| +-+.+++|.++|.|.-=+-.+.+. ..+..-| ...|.+
T Consensus 325 l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h-~g~v~~ 403 (555)
T KOG1587|consen 325 LSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH-IGPVYA 403 (555)
T ss_pred cccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccccc-CcceEe
Confidence 22222111110 0011112345689999998 778899999999987733332221 1122223 567888
Q ss_pred ccccCCCCCCccceecce--eeEEEcCC-CceEEEEecCCcceE--EEEecc--eeeeeccCCCCceeeeeeecCCeEEE
Q 005459 356 PIVKPNQDCKYEPLMSGT--SMMQWDEY-GYRLYAIEEGSSERV--LIFSFG--KCCLNRGVSGMTYARQVIYGEDRLLV 428 (696)
Q Consensus 356 ~~~sp~~~~~~~~l~sg~--~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~~--~~~~s~~~d~~~~~w~~~~~~~~~~~ 428 (696)
+.++|-.. ..+.+++ ++++|... ....+.....+...| .++++. ..++++..||.+.+||+++...+
T Consensus 404 v~~nPF~~---k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~--- 477 (555)
T KOG1587|consen 404 VSRNPFYP---KNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE--- 477 (555)
T ss_pred eecCCCcc---ceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC---
Confidence 88888762 3333333 99999987 666666666667767 777774 45678888999999999987764
Q ss_pred EecCCCCcceeEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC
Q 005459 429 VQSEDTDELKILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK 483 (696)
Q Consensus 429 ~~~~~~~~~~w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg 483 (696)
|. +..-+..+...+.++++|+.||+|...|.+ +|++...
T Consensus 478 ----------------Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 478 ----------------PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ----------------CcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 32 122234556778899999999999999999 9998643
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.11 E-value=6.9e-09 Score=116.96 Aligned_cols=271 Identities=14% Similarity=0.134 Sum_probs=171.3
Q ss_pred CCcccEEEE-EEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----------c-CCCCeEEEEEcCCCcEEEE
Q 005459 206 PISSAIIWL-ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----------L-GSGDAVCASIAPEQQILAV 273 (696)
Q Consensus 206 ~~~~~i~~~-~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----------~-~~~~~v~v~~sp~~~~la~ 273 (696)
.++.-|..+ +++...+..++.++++.++++++.||++++|+......- . ..+...++..-+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 344444444 455555666777778899999999999999998643211 1 1122233777788999999
Q ss_pred EecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE-EECC-CCC-eEEEEEcCCcEEEEEccCCeeEEEeec-cc
Q 005459 274 GTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI-AWTP-DNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQ-IS 349 (696)
Q Consensus 274 g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l-~~sp-dg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~-~~ 349 (696)
|+.||.|++.+++.+............+ .....|.|.+| +|.. ++. .|+.+-..+.+..||+....-..+++. -.
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~-n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIP-NLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecc-cccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998632111111000000 00123445444 5544 444 777788889999999987776666654 11
Q ss_pred ccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEec-CCcceE--EEEec--c--eeee-ecc-CCCCceee
Q 005459 350 LSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEE-GSSERV--LIFSF--G--KCCL-NRG-VSGMTYAR 417 (696)
Q Consensus 350 ~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~-~~~~~v--~~~~~--~--~~~~-s~~-~d~~~~~w 417 (696)
.+.|++++.+|-+ .-++.|. ...+||.+=+.++.... ++..++ +.+.+ . ...+ +++ ..+-+.+|
T Consensus 1195 hG~vTSi~idp~~----~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWC----NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred ccceeEEEecCCc----eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 3569999999987 7777776 78899998666555432 223333 33443 2 2333 333 56788999
Q ss_pred eeeecCCeEEEEecCCCCcceeEEeecCee--eecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 418 QVIYGEDRLLVVQSEDTDELKILHLNLPVS--YISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
++..|..+..+..+.+.+.+.|.. |.. -..+.-+....++..-+..+.+||.|+.+ .||...-+
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~---Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYAL---PSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhc---ccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 999986666566665666655521 211 01222344556666667789999999999 99986543
No 214
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.10 E-value=9.3e-09 Score=98.99 Aligned_cols=233 Identities=17% Similarity=0.227 Sum_probs=148.3
Q ss_pred cEEEEEec----CCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCC-----eEEEEEcCCcEEEEEccC
Q 005459 269 QILAVGTR----RGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-----AFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 269 ~~la~g~~----dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-----~lasg~~Dg~v~vW~~~~ 338 (696)
-.||.|+- ++.|.+-.++... +.+.. . ..+|.-+++.+-|.||.. .||+.+. .+|+|.+..
T Consensus 60 ~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-a------~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ 130 (364)
T KOG0290|consen 60 FRLAVGSFIEEYNNKVQIVQLDEDSGELVED-A------NFDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGD 130 (364)
T ss_pred eeEEEeeeccccCCeeEEEEEccCCCceecc-C------CCCCCCCccceEecCCccccCcchhhcccC--eEEEEeccC
Confidence 35666652 4566666655422 22211 1 124899999999999874 6777664 899999863
Q ss_pred --Ce--eEEEeecc----cccceecccccCCCCCCccceecce---eeEEEcCCCce---EEEEecCCcceEEEEec---
Q 005459 339 --CR--LMSTIRQI----SLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYR---LYAIEEGSSERVLIFSF--- 401 (696)
Q Consensus 339 --~~--~~~~l~~~----~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~---l~~~~~~~~~~v~~~~~--- 401 (696)
.+ +.+.|..+ ....+++..|...+ ..++.+.+ +..+|+++.+. +-..+-.|+..|+.+.|
T Consensus 131 ee~~~~~~~~L~~~kns~~~aPlTSFDWne~d---p~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~ 207 (364)
T KOG0290|consen 131 EESRVELQSVLNNNKNSEFCAPLTSFDWNEVD---PNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKG 207 (364)
T ss_pred cCCceehhhhhccCcccccCCcccccccccCC---cceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccC
Confidence 22 22222221 13345555554332 14444444 88999998752 34455689999988887
Q ss_pred -ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc------------------------ceeEEeecCe----eeecCC
Q 005459 402 -GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE------------------------LKILHLNLPV----SYISQN 452 (696)
Q Consensus 402 -~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~------------------------~~w~~~~~~~----~~~~~~ 452 (696)
.+.++|.+.||+++++|+..-+....+|.+..... .....++.|. .+.+|.
T Consensus 208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~ 287 (364)
T KOG0290|consen 208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQ 287 (364)
T ss_pred ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCc
Confidence 34689999999999999999988888887654211 1123445554 556899
Q ss_pred CceEEEEEcCCC-CEEEEEeCCccE-EEEccCCceEecCCccc--eeeeEEEeEeee---CcEEEEEEe
Q 005459 453 WPVQHVAASKDG-MFLAVAGLHGLI-LYDIRQKKWRVFGDITQ--EQKIQSKGLLWL---GKIIVVCNY 514 (696)
Q Consensus 453 ~~I~~va~s~dG-~~la~ag~dG~i-~w~~~sg~w~~f~~~~~--e~~~~v~~~~w~---~~~lv~~~~ 514 (696)
..|..++|.|.. ..+++||.|..+ +||+.+---+...+... .....|..+.|. ++-+. .||
T Consensus 288 a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwia-i~~ 355 (364)
T KOG0290|consen 288 ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIA-ICF 355 (364)
T ss_pred ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEE-EEe
Confidence 999999999964 589999999999 99997642111111100 011237789996 44444 445
No 215
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.07 E-value=5.7e-09 Score=101.87 Aligned_cols=233 Identities=16% Similarity=0.174 Sum_probs=152.1
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecce------ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK------ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
+.+|+..++++.+...+.+......+. +..|...+. +.|+|..+.|++++.|..-.||...+.+.-.+++...
T Consensus 18 wn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 18 WNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred ecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE
Confidence 678888888888877777766544332 256888887 9999999999999999999999985535544444433
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE---EEeecccccceecccccCCCCCCccceecce--
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM---STIRQISLSSISSPIVKPNQDCKYEPLMSGT-- 373 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~---~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-- 373 (696)
. +.++++++.|+|.++.+|+|+.-+.|.||-.+...-- ..++-...+.|.++.++|+. -.++.|+
T Consensus 98 R------iNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn----VLlaaGs~D 167 (361)
T KOG1523|consen 98 R------INRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN----VLLAAGSTD 167 (361)
T ss_pred E------eccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc----ceecccccC
Confidence 2 8899999999999999999999999999987654422 22333336789999999998 7777776
Q ss_pred -eeEEEcC-----CC-------------ceEEEEecCCcceE--EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEec
Q 005459 374 -SMMQWDE-----YG-------------YRLYAIEEGSSERV--LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQS 431 (696)
Q Consensus 374 -~~~~W~~-----~~-------------~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~ 431 (696)
..++++. +. ++++.......+.+ +.|++ +..++=.+.|.++.+-|.....++
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~------ 241 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER------ 241 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh------
Confidence 4444432 11 12222221223344 44555 666666667776665443332221
Q ss_pred CCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC-ceEec
Q 005459 432 EDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK-KWRVF 488 (696)
Q Consensus 432 ~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg-~w~~f 488 (696)
+.......-|.+++.|-.+.. ++.||.|... ++..... .|+.-
T Consensus 242 -------------v~~~~~~~lP~ls~~~ise~~-vv~ag~~c~P~lf~~~~~~~l~~~ 286 (361)
T KOG1523|consen 242 -------------VQSVATAQLPLLSVSWISENS-VVAAGYDCGPVLFVTDEEGGLSFA 286 (361)
T ss_pred -------------ccchhhccCCceeeEeecCCc-eeecCCCCCceEEEeccccceeee
Confidence 222222235788888866655 5556666444 6655433 56543
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.7e-08 Score=110.21 Aligned_cols=214 Identities=15% Similarity=0.147 Sum_probs=120.3
Q ss_pred ccccEEEEcCCCcEEEEEecC---cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCe
Q 005459 68 GENLQAVWSPDTKLIAVVTSS---LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKH 144 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~d---g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 144 (696)
+.+...+|||||+.||..+.+ ..|.+||+..+...... . ..+ ......+++|++.
T Consensus 196 ~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-----------------~----~~g-~~~~~~~SPDG~~ 253 (427)
T PRK02889 196 EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-----------------N----FKG-SNSAPAWSPDGRT 253 (427)
T ss_pred CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-----------------c----CCC-CccceEECCCCCE
Confidence 456789999999999987643 35888888654321110 0 011 1112357788888
Q ss_pred EEE-EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceE
Q 005459 145 MLL-GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLL 223 (696)
Q Consensus 145 llv-~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 223 (696)
|+. ...+|...++.++........ +..+.... ..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~~-----------------------------------lt~~~~~~----------~~ 288 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLRR-----------------------------------LTQSSGID----------TE 288 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcEE-----------------------------------CCCCCCCC----------cC
Confidence 875 455666555544422111110 00000001 11
Q ss_pred EEEEeCCcEEEEeec-cCCceeeeee--ecc--eecCCCCeE-EEEEcCCCcEEEEEecCC---eEEEEEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVS-KKGLKLAEFI--KID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~~~~~~~~--~~~--~~~~~~~~v-~v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~ 294 (696)
..++|||+.++..++ ++...+|... .++ .+....... ..+|||||++||..+.++ .|.+||+.+ ++. +.
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~~-~~ 366 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT-GQV-TA 366 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC-CCe-EE
Confidence 347899987776554 3556666543 111 121122222 378999999999887664 699999876 433 22
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE---EEEEccCCeeEEEeecccccceecccccCC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL---TVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v---~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+.. .+.....+|+|||+.|+.++.+++- .+-++. +.....+..+ ...+..++|+|.
T Consensus 367 lt~---------~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~-~g~~~~p~wsp~ 425 (427)
T PRK02889 367 LTD---------TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQ-GGDVREPSWGPF 425 (427)
T ss_pred ccC---------CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecC-CCCCCCCccCCC
Confidence 322 1234678999999999988876643 333443 3344445433 334566667663
No 217
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.07 E-value=3.4e-10 Score=115.14 Aligned_cols=260 Identities=15% Similarity=0.153 Sum_probs=183.2
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.++..+.++.+|+.|+.|+.-|.|-.+|+.+ ..+...+.. ...|.++.|-.+.+++|++-. +-+.|+|-
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~v---------~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~ 198 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEINV---------METVRDVTFLHNEQFFAVAQK-KYVYVYDN 198 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeeeh---------hhhhhhhhhhcchHHHHhhhh-ceEEEecC
Confidence 5678899999999999999999999999988 777777765 567999999999999998876 78899997
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeeccC
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNRGV 410 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~~~ 410 (696)
.|-. ++.++.+ ..|..+.|-|.. -.|++++ -...=|...|+++..+....+++ ..-.| ...+-.|..
T Consensus 199 ~GtE-lHClk~~--~~v~rLeFLPyH----fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs 271 (545)
T KOG1272|consen 199 NGTE-LHCLKRH--IRVARLEFLPYH----FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS 271 (545)
T ss_pred CCcE-Eeehhhc--Cchhhhcccchh----heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC
Confidence 6654 6666665 458888888885 5555554 33344677777776554333333 55555 445567888
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~ 489 (696)
.|++.+|.....+. ....+-|.+||+++|+.++|+|+|++|.|..+ +||+..-+ ++.
T Consensus 272 nGtVSlWSP~skeP--------------------LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~-ql~- 329 (545)
T KOG1272|consen 272 NGTVSLWSPNSKEP--------------------LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY-QLH- 329 (545)
T ss_pred CceEEecCCCCcch--------------------HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc-ccc-
Confidence 89999998665554 34567899999999999999999999999999 99997633 111
Q ss_pred CccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC-C----CCccceeEEeecCCccEEEEccCCEEEEEEcCc
Q 005459 490 DITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY-H----LDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPF 563 (696)
Q Consensus 490 ~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~-~----l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~ 563 (696)
+....+....+...+..++++++ ...+.+|.-. . ....++-|....+-.-+-+.|++|.|-++.+.+
T Consensus 330 --t~~tp~~a~~ls~SqkglLA~~~-----G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 330 --TYRTPHPASNLSLSQKGLLALSY-----GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred --eeecCCCccccccccccceeeec-----CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 11112334467777887777733 2568888653 2 112233344322222256667888888865544
No 218
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=2.9e-08 Score=108.86 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=119.1
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEc
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWK 327 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~ 327 (696)
+..|...+. .+|+|||+.||..+. +..|.+||+.+ ++. +.+.. +.+.+...+|||||+.|+ +.+.
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~~-~~l~~--------~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQR-ELVGN--------FPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-CcE-EEeec--------CCCcccCcEECCCCCEEEEEEec
Confidence 344555555 999999999998764 46899999976 433 34444 667788999999999876 5556
Q ss_pred CCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecCCcceE--E
Q 005459 328 SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV--L 397 (696)
Q Consensus 328 Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v--~ 397 (696)
++. |.+||+.++.. ..+..+ ......+.|+|++ +.++..+ .+..|+..+++......+ ...+ .
T Consensus 267 ~g~~~Iy~~d~~~~~~-~~Lt~~-~~~~~~~~~spDG----~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~-~~~~~~~ 339 (435)
T PRK05137 267 GGNTDIYTMDLRSGTT-TRLTDS-PAIDTSPSYSPDG----SQIVFESDRSGSPQLYVMNADGSNPRRISFG-GGRYSTP 339 (435)
T ss_pred CCCceEEEEECCCCce-EEccCC-CCccCceeEcCCC----CEEEEEECCCCCCeEEEEECCCCCeEEeecC-CCcccCe
Confidence 655 66778887764 345443 3446678999998 5554322 566777777655443322 1222 4
Q ss_pred EEec-ceeeeeccCC-C--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459 398 IFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 398 ~~~~-~~~~~s~~~d-~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d 473 (696)
.+++ ++.++..+.+ + .+.++++..+..+ .......+...+|||||++|+..+.+
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~----------------------~lt~~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER----------------------ILTSGFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCceE----------------------eccCCCCCCCCeECCCCCEEEEEEcc
Confidence 4666 6666544332 2 2223332111111 11112236678999999998876653
Q ss_pred c------cE-EEEccCCceEe
Q 005459 474 G------LI-LYDIRQKKWRV 487 (696)
Q Consensus 474 G------~i-~w~~~sg~w~~ 487 (696)
+ .+ ++++.++.-+.
T Consensus 398 ~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCCCcceEEEEECCCCceEE
Confidence 2 34 66766655443
No 219
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.07 E-value=8.9e-09 Score=99.26 Aligned_cols=98 Identities=22% Similarity=0.345 Sum_probs=76.8
Q ss_pred CCeEE-EEEcCCCcEEEEE--ecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---Cc
Q 005459 257 GDAVC-ASIAPEQQILAVG--TRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RG 330 (696)
Q Consensus 257 ~~~v~-v~~sp~~~~la~g--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~ 330 (696)
...+. ++|+|+++.+|+. ..++.|.+||++ ...+..+ +.+.++.|.|||+|++|+.|+.+ |.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--~~~i~~~----------~~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--GKKIFSF----------GTQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc--ccEeEee----------cCCCceEEEECCCCCEEEEEEccCCCcE
Confidence 33466 9999999987764 467899999996 4444443 34678899999999999998754 56
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+.+||+...+.+.+.+.. .++.++|+|+| +.++++.
T Consensus 127 l~~wd~~~~~~i~~~~~~---~~t~~~WsPdG----r~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS---DATDVEWSPDG----RYLATAT 162 (194)
T ss_pred EEEEECCCCEEeeccccC---cEEEEEEcCCC----CEEEEEE
Confidence 999999988888776533 46888999999 8888665
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=4.5e-08 Score=97.07 Aligned_cols=170 Identities=18% Similarity=0.235 Sum_probs=108.3
Q ss_pred cCCCCeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 254 LGSGDAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 254 ~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
.||.-.+.++|++||..+++++- |..|.|||.++ +..++.... -.|.+.-+.|||||.+|+++.-|++.+
T Consensus 193 pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt-g~~~pL~~~--------glgg~slLkwSPdgd~lfaAt~davfr 263 (445)
T KOG2139|consen 193 PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDT-GQKIPLIPK--------GLGGFSLLKWSPDGDVLFAATCDAVFR 263 (445)
T ss_pred CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCC-CCccccccc--------CCCceeeEEEcCCCCEEEEecccceee
Confidence 56755455999999999999875 57899999998 555544423 468899999999999999999999999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCcccee--cc-eeeEEEcCCCceEEEEecCCcceEEEEec-ceeeeec
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM--SG-TSMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNR 408 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~--sg-~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~ 408 (696)
+|+...... + +.+. +| ++..+|++.+..++....+ ...++.++| ++....-
T Consensus 264 lw~e~q~wt--~----------------------erw~lgsgrvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 264 LWQENQSWT--K----------------------ERWILGSGRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFL 318 (445)
T ss_pred eehhcccce--e----------------------cceeccCCceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCcccc
Confidence 996432210 0 1222 22 2667888888888888765 457787777 4332221
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
. .+.+ |.++--.+ .++ -.+.-++.+ --+++.++||+|.|.|||+--+.+
T Consensus 319 ~-~~~~--k~~lliaD---------L~e---~ti~ag~~l--~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 319 R-PQSI--KRVLLIAD---------LQE---VTICAGQRL--CCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred C-cccc--eeeeeecc---------chh---hhhhcCccc--ccCccceeeECCCCCEEEEEEcCC
Confidence 1 1111 11111000 000 000001111 145789999999999999986654
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=2.8e-08 Score=108.95 Aligned_cols=124 Identities=15% Similarity=0.145 Sum_probs=74.1
Q ss_pred EEEEeCCcEEEEeec-cCCceee--eeeecc--eecCCCCeE-EEEEcCCCcEEEEEecCC---eEEEEEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKID--KELGSGDAV-CASIAPEQQILAVGTRRG---VVELYDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~~~~~--~~~~~~--~~~~~~~~v-~v~~sp~~~~la~g~~dg---~v~vw~~~~~~~~~~~ 294 (696)
..++|||+.++..++ ++...+| +...++ .+..+.... ..+|||||+.||..+.++ .|.+||+.+ ++.. .
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~~~-~ 374 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GSVR-T 374 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CCeE-E
Confidence 357888887776664 3343444 332322 122222223 389999999999876543 689999876 4432 2
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCCeeEEEeecccccceecccccC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
+.. .......+|+|||+.|+..+.+ +.+.++++.++ ....+..+ ...+..++|+|
T Consensus 375 Lt~---------~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~-~g~~~~p~wsp 432 (433)
T PRK04922 375 LTP---------GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSA-DGEVREPAWSP 432 (433)
T ss_pred CCC---------CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccC-CCCCCCCccCC
Confidence 322 2234567999999988877664 34777787654 34444433 33456666665
No 222
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.02 E-value=2.6e-09 Score=102.73 Aligned_cols=209 Identities=14% Similarity=0.208 Sum_probs=136.1
Q ss_pred HhhcccccEEEEcCCCc-----EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe
Q 005459 64 VQREGENLQAVWSPDTK-----LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (696)
Q Consensus 64 l~~~G~~~~v~wsPDg~-----~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 138 (696)
+++.-+.+.+.|.||.. .|| |++.+||+|.+........... + + ...+ -....+++++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA--Ts~D~LRlWri~~ee~~~~~~~-------~--L----~~~k-ns~~~aPlTSF 156 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA--TSSDFLRLWRIGDEESRVELQS-------V--L----NNNK-NSEFCAPLTSF 156 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh--cccCeEEEEeccCcCCceehhh-------h--h----ccCc-ccccCCccccc
Confidence 45566788999999985 343 4455899999986543221100 0 0 0000 00112244454
Q ss_pred ee---CCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEE
Q 005459 139 VS---DNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLE 215 (696)
Q Consensus 139 ~~---~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 215 (696)
.. +.++|.+.+-|-+-.+ |+-+..... ..++.+..|+..|.+++
T Consensus 157 DWne~dp~~igtSSiDTTCTi--Wdie~~~~~-------------------------------~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTI--WDIETGVSG-------------------------------TVKTQLIAHDKEVYDIA 203 (364)
T ss_pred ccccCCcceeEeecccCeEEE--EEEeecccc-------------------------------ceeeEEEecCcceeEEE
Confidence 32 4466666666666555 554443111 12234566788888877
Q ss_pred EccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecce--e----cC-CCCeEEEEEcC-CCcEEEEEecC-CeEEEEEc
Q 005459 216 LCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKIDK--E----LG-SGDAVCASIAP-EQQILAVGTRR-GVVELYDL 285 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~--~----~~-~~~~v~v~~sp-~~~~la~g~~d-g~v~vw~~ 285 (696)
| ..+|+ ++++.+.||.++.+|++..+- + .. +..-.++++|+ |-+++|+-..| ..|.+-|+
T Consensus 204 f----------~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi 273 (364)
T KOG0290|consen 204 F----------LKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI 273 (364)
T ss_pred e----------ccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence 4 44443 566667788889888765321 1 11 33445588988 56788875554 68999999
Q ss_pred cCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCC
Q 005459 286 AESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+.....+.++++ |++.|+.++|.| ..+.|++++.|..+.+||+...
T Consensus 274 R~P~tpva~L~~--------H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 274 RVPCTPVARLRN--------HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cCCCcceehhhc--------CcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 988888889998 999999999999 5679999999999999998653
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.02 E-value=9.5e-10 Score=111.96 Aligned_cols=215 Identities=15% Similarity=0.165 Sum_probs=139.3
Q ss_pred HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEee-eCC
Q 005459 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIV-SDN 142 (696)
Q Consensus 64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~-~~~ 142 (696)
+.++|++ .+.++.+|+.|+.+...|+|--+|..+......+ ...+ .|..+. ..+
T Consensus 127 l~eFGPY-~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------------~v~E---------tv~Dv~~LHn 181 (545)
T KOG1272|consen 127 LPEFGPY-HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------------NVME---------TVRDVTFLHN 181 (545)
T ss_pred ccccCCe-eeeecCCccEEEecCCccceeeeecccceeeeee---------------ehhh---------hhhhhhhhcc
Confidence 4467875 7899999999999999999999988755421111 0000 011110 012
Q ss_pred CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcce
Q 005459 143 KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRL 222 (696)
Q Consensus 143 ~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 222 (696)
+.+++......+++++=+|... ++......+..++
T Consensus 182 eq~~AVAQK~y~yvYD~~GtEl--------------------------------------HClk~~~~v~rLe------- 216 (545)
T KOG1272|consen 182 EQFFAVAQKKYVYVYDNNGTEL--------------------------------------HCLKRHIRVARLE------- 216 (545)
T ss_pred hHHHHhhhhceEEEecCCCcEE--------------------------------------eehhhcCchhhhc-------
Confidence 3333333444555554332211 1112222344455
Q ss_pred EEEEEeCCcEEEEeeccCCceeeeeeecceec---CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 223 LFVLYSNGQLMSCSVSKKGLKLAEFIKIDKEL---GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
|.|---++++++..+-++--|+..++... .-.+.+. +.-||-...+-+|..+|+|.+|.-.. .+++..+-.
T Consensus 217 ---FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s-kePLvKiLc- 291 (545)
T KOG1272|consen 217 ---FLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS-KEPLVKILC- 291 (545)
T ss_pred ---ccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC-cchHHHHHh-
Confidence 45555566666666666666776665431 1123444 88899999999999999999999887 666666666
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
|.++|.+|++.|+|+++|+.+.|+.++|||+..-..+.++... ...+.+++|..+
T Consensus 292 -------H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp--~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 292 -------HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP--HPASNLSLSQKG 346 (545)
T ss_pred -------cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecC--CCcccccccccc
Confidence 9999999999999999999999999999999887766665541 224445555443
No 224
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=7e-08 Score=93.74 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=53.6
Q ss_pred EEEEeCCcEEEEEccCeEEEeecCCcee-eEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459 25 IYFKVNNGLLLIASPCHIELWSSSQHKV-RLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (696)
Q Consensus 25 v~fs~dg~lla~~~~~~v~iW~~~~~~~-~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~ 100 (696)
++.+.||++||++.|..|.|=..+..-. .+++..-.. +.+-.-..++||||++.||.+.+.|+|++||+-...
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpk---D~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPK---DPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCC---CCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 4578999999999999999977752211 223332111 223445689999999999999999999999997543
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.98 E-value=8.6e-09 Score=106.87 Aligned_cols=140 Identities=17% Similarity=0.270 Sum_probs=104.0
Q ss_pred CCeEEEEEcC-CCcEEEEEecCCeEEEEEccCCC-------------ce--eeEEeecc--CCCCC--CCCCCeEEEEEC
Q 005459 257 GDAVCASIAP-EQQILAVGTRRGVVELYDLAESA-------------SL--IRTVSLYD--WGYSM--DDTGPVSCIAWT 316 (696)
Q Consensus 257 ~~~v~v~~sp-~~~~la~g~~dg~v~vw~~~~~~-------------~~--~~~~~~~~--~~~~~--~h~g~V~~l~~s 316 (696)
...+|+.|-| +..++.++-.+|.+.+||..... .. +.+.+.+. -|... --++.|+..+||
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 4566788888 45677778899999999764311 00 11111100 01111 135689999999
Q ss_pred CCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCc
Q 005459 317 PDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSS 393 (696)
Q Consensus 317 pdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~ 393 (696)
|||++||+-+.||.+||+|..+.+++...+-. -....++.||||+ +++++|. -+-+|.....+++.-..+|+
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY-FGGLLCvcWSPDG----KyIvtGGEDDLVtVwSf~erRVVARGqGHk 374 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQELLGVMKSY-FGGLLCVCWSPDG----KYIVTGGEDDLVTVWSFEERRVVARGQGHK 374 (636)
T ss_pred CCCceEEEEecCceEEEeeccHHHHHHHHHhh-ccceEEEEEcCCc----cEEEecCCcceEEEEEeccceEEEeccccc
Confidence 99999999999999999999888877666553 3458899999999 9999998 77789999999999999999
Q ss_pred ceEEEEec
Q 005459 394 ERVLIFSF 401 (696)
Q Consensus 394 ~~v~~~~~ 401 (696)
.+|.++.|
T Consensus 375 SWVs~VaF 382 (636)
T KOG2394|consen 375 SWVSVVAF 382 (636)
T ss_pred cceeeEee
Confidence 99944444
No 226
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=8.3e-08 Score=100.42 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=107.3
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC-----CeEEEEECCCCCeEEEEEcCCcE
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG-----PVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g-----~V~~l~~spdg~~lasg~~Dg~v 331 (696)
..+. |.+|+-..+||+|+.||.|..||.++ .+...++....- ...|.+ .|++++|+.||-.+++|..+|.+
T Consensus 176 ~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~-ksrv~~l~~~~~--v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v 252 (703)
T KOG2321|consen 176 GELNVVSINEEHGLLACGTEDGVVEFWDPRD-KSRVGTLDAASS--VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV 252 (703)
T ss_pred ccceeeeecCccceEEecccCceEEEecchh-hhhheeeecccc--cCCCccccccCcceEEEecCCceeEEeeccCCcE
Confidence 4555 99999999999999999999999987 555554443111 011444 49999999999999999999999
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEecCCcceE--EEEec-ceeee
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCL 406 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~ 406 (696)
.++|+...+.+..-.+...-.+..+.|-+.+ ....++|.. .+++|+..+++.+....... .+ +++-+ +..++
T Consensus 253 ~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~--~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f 329 (703)
T KOG2321|consen 253 LIYDLRASKPLLVKDHGYELPIKKLDWQDTD--QQNKVVSMDKRILKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFF 329 (703)
T ss_pred EEEEcccCCceeecccCCccceeeecccccC--CCceEEecchHHhhhcccccCCceeeccccC-CcCceeeecCCceEE
Confidence 9999988776654444335567777776653 124455544 78899999998887765432 24 44444 55566
Q ss_pred eccCCCCce
Q 005459 407 NRGVSGMTY 415 (696)
Q Consensus 407 s~~~d~~~~ 415 (696)
++..+..+.
T Consensus 330 ~Ane~~~m~ 338 (703)
T KOG2321|consen 330 TANESSKMH 338 (703)
T ss_pred EecCCCcce
Confidence 666555443
No 227
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=5e-08 Score=106.57 Aligned_cols=206 Identities=14% Similarity=0.118 Sum_probs=123.3
Q ss_pred ceEEEEEeCCcEEEEeec---cCCceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEEE-ecCC--eEEEEEccCCCce
Q 005459 221 RLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASL 291 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~---d~~~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~g-~~dg--~v~vw~~~~~~~~ 291 (696)
.....++|||+.++..+. +..+.+++...++. +....... ..+|||||+.||.. +.+| .|.+||+++ +..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-g~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-GQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-CCE
Confidence 344668899987776542 23456677655432 22222223 38999999988865 4455 488888876 443
Q ss_pred eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEE--EccCCeeEEEeecccccceecccccCCCCCCccc
Q 005459 292 IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVW--SVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEP 368 (696)
Q Consensus 292 ~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW--~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~ 368 (696)
..+.. +...+...+|||||+.|+..+.+ +...+| ++.++.. ..+... ......+.|+|++ +.
T Consensus 280 -~~lt~--------~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~SpDG----~~ 344 (429)
T PRK03629 280 -RQVTD--------GRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE-GSQNQDADVSSDG----KF 344 (429)
T ss_pred -EEccC--------CCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC-CCCccCEEECCCC----CE
Confidence 33333 34567889999999999877764 445565 5555543 333333 2235678899998 55
Q ss_pred eecce------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeee--cCCeEEEEecCCCCccee
Q 005459 369 LMSGT------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIY--GEDRLLVVQSEDTDELKI 439 (696)
Q Consensus 369 l~sg~------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~--~~~~~~~~~~~~~~~~~w 439 (696)
++... .+..|++++++...........-..+++ ++.++..+.++....+.+.. |..
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~--------------- 409 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF--------------- 409 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC---------------
Confidence 54322 4677888877655443332222245666 77777777666533322222 222
Q ss_pred EEeecCeeeecCCCceEEEEEcC
Q 005459 440 LHLNLPVSYISQNWPVQHVAASK 462 (696)
Q Consensus 440 ~~~~~~~~~~~~~~~I~~va~s~ 462 (696)
+..+.+|...++..+|||
T Consensus 410 -----~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 -----KARLPATDGQVKFPAWSP 427 (429)
T ss_pred -----eEECccCCCCcCCcccCC
Confidence 334456677788888887
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.96 E-value=6.5e-07 Score=95.14 Aligned_cols=293 Identities=13% Similarity=0.080 Sum_probs=155.1
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEee
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
..+.+++||+.+++.+.|+.+.++|..+.+.. ..-..+..+++|+||+++++++ .++++.++|..+ .+.++.+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeeccc
Confidence 34568999998888888999999998776543 2224556699999999999876 689999999988 788887765
Q ss_pred ccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEccCCee--EEEeecccccceecccccCCCCCCccceecce-
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT- 373 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~- 373 (696)
...+... ....+..+-.+|+...++..-.| +.|.+-|...... ...+.- ........|+|++ ++++.+.
T Consensus 119 ~~~~~~~-~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--g~~~~D~~~dpdg----ry~~va~~ 191 (369)
T PF02239_consen 119 GGMPVDG-PESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--GRFPHDGGFDPDG----RYFLVAAN 191 (369)
T ss_dssp -EE-TTT-S---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTS----SEEEEEEG
T ss_pred ccccccc-cCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecc--cccccccccCccc----ceeeeccc
Confidence 3322211 34568889899999977777665 6666667654332 223321 1223445678887 7665543
Q ss_pred ---eeEEEcCCCceEEEEec----CCcceEEEE-ecceeeeeccCCCCceeeeeeecCCeEEEEecCCC----CcceeEE
Q 005459 374 ---SMMQWDEYGYRLYAIEE----GSSERVLIF-SFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDT----DELKILH 441 (696)
Q Consensus 374 ---~~~~W~~~~~~l~~~~~----~~~~~v~~~-~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~----~~~~w~~ 441 (696)
.+.+++.+++++..... .|..++..+ +++. -.+|..........-.-+.+. +...|+.
T Consensus 192 ~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~----------g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 192 GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF----------GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT----------EEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeEEEeeccceEEEEeeccccccccccccccCCCc----------ceEEeeccccceecccccCCccccchhhcCeE
Confidence 77788988887766542 123333222 2210 011222211111111111111 1123433
Q ss_pred eecCeeeecCCCceEEEEEcCCCCEEEEE----eCCccE-EEEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEe
Q 005459 442 LNLPVSYISQNWPVQHVAASKDGMFLAVA----GLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNY 514 (696)
Q Consensus 442 ~~~~~~~~~~~~~I~~va~s~dG~~la~a----g~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~ 514 (696)
+ .+......+ ..+..+||++++.+. ...+.+ ++|.++.+-.. .........+..+.|. ++.+-++.+
T Consensus 262 v---~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~~~~~h~ef~~dG~~v~vS~~ 335 (369)
T PF02239_consen 262 V---KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPGKRVVHMEFNPDGKEVWVSVW 335 (369)
T ss_dssp E---EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT--EEEEEE-TTSSEEEEEEE
T ss_pred E---EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCCCcEeccEECCCCCEEEEEEe
Confidence 2 233334445 778889999999998 444778 99998864211 1111111125567775 566766655
Q ss_pred ecCCCeEEEEEeeCCCCCccceeEEeecCC
Q 005459 515 IDSSNTYELLFYPRYHLDQSSLLCRKSLLA 544 (696)
Q Consensus 515 ~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~ 544 (696)
... .+|.+|+...|. ...+.++..
T Consensus 336 ~~~---~~i~v~D~~Tl~---~~~~i~~~t 359 (369)
T PF02239_consen 336 DGN---GAIVVYDAKTLK---EKKRIPVPT 359 (369)
T ss_dssp --T---TEEEEEETTTTE---EEEEEE--S
T ss_pred cCC---CEEEEEECCCcE---EEEEEEeeC
Confidence 322 289999987443 344444444
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.1e-07 Score=104.25 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=119.9
Q ss_pred ceeeeeee--cceecCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE
Q 005459 242 LKLAEFIK--IDKELGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW 315 (696)
Q Consensus 242 ~~~~~~~~--~~~~~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~ 315 (696)
+.+||... .+.+..+...+. .+|+|||+.||..+.+ ..|.+||+++ ++. ..+.. +.+...+.+|
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~~-~~l~~--------~~g~~~~~~~ 255 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQR-ELVAS--------FRGINGAPSF 255 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CCE-EEecc--------CCCCccCceE
Confidence 44555432 222334444555 8999999999988743 4699999976 433 23333 4455668899
Q ss_pred CCCCCeEE-EEEcCC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEE
Q 005459 316 TPDNSAFA-VGWKSR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLY 386 (696)
Q Consensus 316 spdg~~la-sg~~Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~ 386 (696)
||||+.|+ +.+.+| .|.+||+.++.. ..+..+ ......+.|+|++ +.++..+ .+..++..+++..
T Consensus 256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~-~~~~~~~~~spDG----~~l~f~sd~~g~~~iy~~dl~~g~~~ 329 (433)
T PRK04922 256 SPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNH-FGIDTEPTWAPDG----KSIYFTSDRGGRPQIYRVAASGGSAE 329 (433)
T ss_pred CCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccC-CCCccceEECCCC----CEEEEEECCCCCceEEEEECCCCCeE
Confidence 99999776 455555 499999988764 344443 3345678999998 5554332 3556666665543
Q ss_pred EEe-cCCcceEEEEec-ceeeeeccCC-C--CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEc
Q 005459 387 AIE-EGSSERVLIFSF-GKCCLNRGVS-G--MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAAS 461 (696)
Q Consensus 387 ~~~-~~~~~~v~~~~~-~~~~~s~~~d-~--~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s 461 (696)
... .++...-..+++ ++.++..+.+ + .+.+|++..+..+ .+ .+.......+|+
T Consensus 330 ~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~---------------------~L-t~~~~~~~p~~s 387 (433)
T PRK04922 330 RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR---------------------TL-TPGSLDESPSFA 387 (433)
T ss_pred EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE---------------------EC-CCCCCCCCceEC
Confidence 322 222222256666 6666543322 2 3555555433321 11 111123456899
Q ss_pred CCCCEEEEEeCC---ccE-EEEccCC
Q 005459 462 KDGMFLAVAGLH---GLI-LYDIRQK 483 (696)
Q Consensus 462 ~dG~~la~ag~d---G~i-~w~~~sg 483 (696)
|||++++..+.+ +.+ +++...+
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC
Confidence 999998887764 234 6666543
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.92 E-value=1.2e-07 Score=103.58 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=103.8
Q ss_pred EEEEeCCcEEEEeecc---CCceeeeeeeccee--cCCCCe-EEEEEcCCCcEEEE-EecCCeEEEEEccCCCceeeEEe
Q 005459 224 FVLYSNGQLMSCSVSK---KGLKLAEFIKIDKE--LGSGDA-VCASIAPEQQILAV-GTRRGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d---~~~~~~~~~~~~~~--~~~~~~-v~v~~sp~~~~la~-g~~dg~v~vw~~~~~~~~~~~~~ 296 (696)
..++|||+.++..+.+ ..+.+||...++.. ...... ...+|||||+.||. .+.+|...+|.++..+...+.+.
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt 280 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT 280 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC
Confidence 4578999887776643 23667787655432 222222 34899999998875 57788888887764334444444
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEc--cCCeeEEEeecccccceecccccCCCCCCccceecce
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSV--SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~--~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
. +.+.+....|||||+.|+..+. ++...+|.+ .++.. ..+... ......+.|+|++ +.++...
T Consensus 281 ~--------~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~-g~~~~~~~~SpDG----~~Ia~~s 346 (427)
T PRK02889 281 Q--------SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFT-GSYNTSPRISPDG----KLLAYIS 346 (427)
T ss_pred C--------CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecC-CCCcCceEECCCC----CEEEEEE
Confidence 4 5556677899999998886654 466777765 44432 222222 1223467899998 6554322
Q ss_pred ------eeEEEcCCCceEEEEecCCcceEEEEec-ceeeeecc
Q 005459 374 ------SMMQWDEYGYRLYAIEEGSSERVLIFSF-GKCCLNRG 409 (696)
Q Consensus 374 ------~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~~~~s~~ 409 (696)
.+.+|+..+++......+....-..+++ ++.++..+
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~~ 389 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYAT 389 (427)
T ss_pred ccCCcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEEE
Confidence 5778888776654443322222245555 55554443
No 231
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.91 E-value=8.7e-07 Score=92.15 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=61.5
Q ss_pred EEEcCCCcEEEEEe----------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEE-cCC
Q 005459 262 ASIAPEQQILAVGT----------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGW-KSR 329 (696)
Q Consensus 262 v~~sp~~~~la~g~----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~-~Dg 329 (696)
++++|+++.+.+.. ..+.|.++|..+ .+.+..+.. ...+..|++||||+ .|.+.. .++
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t-~kvi~~i~v---------G~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT-GKRLRKIEL---------GHEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC-CeEEEEEeC---------CCceeeEEECCCCCeEEEEeCCCCC
Confidence 99999999888853 225799999887 777777765 34789999999999 888766 578
Q ss_pred cEEEEEccCCeeEEEeec
Q 005459 330 GLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~ 347 (696)
.|.+.|+.+++.+.++..
T Consensus 323 ~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 323 TLYIFDAETGKELSSVNQ 340 (352)
T ss_pred cEEEEECcCCeEEeeecc
Confidence 899999999999888744
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=3.3e-07 Score=100.58 Aligned_cols=217 Identities=11% Similarity=0.105 Sum_probs=122.1
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEEEEEccCCeeEEEeeccccccee
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSIS 354 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~vW~~~~~~~~~~l~~~~~~~v~ 354 (696)
..|.++|.+ +...+.+.. |.+.+.+.+|||||+.|+..+. +..|.+||+.++... .+..+ ...+.
T Consensus 182 ~~l~~~d~d--g~~~~~lt~--------~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~-~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQD--GANVRYLTD--------GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNF-PGMTF 249 (435)
T ss_pred eEEEEECCC--CCCcEEEec--------CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecC-CCccc
Confidence 367777765 455566666 7889999999999999988764 357999999877542 33332 23355
Q ss_pred cccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCC--ceeeeeeecCCeEEEEecC
Q 005459 355 SPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGM--TYARQVIYGEDRLLVVQSE 432 (696)
Q Consensus 355 ~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~--~~~w~~~~~~~~~~~~~~~ 432 (696)
+++|+|++ +.++ ... +.++. +.++++..+..
T Consensus 250 ~~~~SPDG----~~la----------------~~~-------------------~~~g~~~Iy~~d~~~~~~-------- 282 (435)
T PRK05137 250 APRFSPDG----RKVV----------------MSL-------------------SQGGNTDIYTMDLRSGTT-------- 282 (435)
T ss_pred CcEECCCC----CEEE----------------EEE-------------------ecCCCceEEEEECCCCce--------
Confidence 66677766 3322 111 11111 22222222211
Q ss_pred CCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC-Cc--cE-EEEccCCceEecCCccceeeeEEEeEeee--C
Q 005459 433 DTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL-HG--LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL--G 506 (696)
Q Consensus 433 ~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~-dG--~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~ 506 (696)
..+..+.......+|||||++|+.++. +| .+ ++|+.+++.+.+... ........|. +
T Consensus 283 -------------~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG 345 (435)
T PRK05137 283 -------------TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRG 345 (435)
T ss_pred -------------EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecC----CCcccCeEECCCC
Confidence 112223334566899999999998874 44 35 778777655443211 1113346786 4
Q ss_pred cEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCc-e---EEEEEEEEec
Q 005459 507 KIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPF-D---VHIFHVKLFG 574 (696)
Q Consensus 507 ~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~-~---~~l~~~~~~~ 574 (696)
+.|+... ...+.+.|.+|+.+.-.. ..+... .......++++++.++..+.+. . ..||.+.+.+
T Consensus 346 ~~ia~~~--~~~~~~~i~~~d~~~~~~-~~lt~~-~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 346 DLIAFTK--QGGGQFSIGVMKPDGSGE-RILTSG-FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CEEEEEE--cCCCceEEEEEECCCCce-EeccCC-CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 4565542 223446788887641111 111111 1112356788898888755432 2 4788887654
No 233
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.85 E-value=2.3e-06 Score=84.04 Aligned_cols=229 Identities=13% Similarity=0.140 Sum_probs=138.8
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC--eEEEEECCCCCeEEEEEcC------CcE
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP--VSCIAWTPDNSAFAVGWKS------RGL 331 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~--V~~l~~spdg~~lasg~~D------g~v 331 (696)
..++||.|..-+|+|..+| .|+|+.+...+ ...... +.+. +..|-|-- ..+..+|+.+ +.|
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke-~~~r~~--------~~~G~~~veMLfR~-N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKE-SASRQF--------IDGGFKIVEMLFRS-NYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhh-hhhhcc--------ccCchhhhhHhhhh-ceEEEecCCCCCCCCCceE
Confidence 4499999999999999887 59999876221 111111 2222 22222221 2233345443 479
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCC-CceEEEEec--CCcceEEEEec--ceeee
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEY-GYRLYAIEE--GSSERVLIFSF--GKCCL 406 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~-~~~l~~~~~--~~~~~v~~~~~--~~~~~ 406 (696)
.|||=...+++.++.-. ..|.++.++++. -.++.-.++.+|... .-+++.... .....+.++.+ .+.++
T Consensus 78 iIWDD~k~~~i~el~f~--~~I~~V~l~r~r----iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 78 IIWDDLKERCIIELSFN--SEIKAVKLRRDR----IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLL 151 (346)
T ss_pred EEEecccCcEEEEEEec--cceeeEEEcCCe----EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEE
Confidence 99997777777777653 568888888874 222322377778664 334443332 11233555554 33332
Q ss_pred --eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccC
Q 005459 407 --NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQ 482 (696)
Q Consensus 407 --s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~s 482 (696)
-|-..|.+++-++.....+ .|....+|..+|.+++++.+|..||+||..|++ +||..+
T Consensus 152 afPg~k~GqvQi~dL~~~~~~------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~ 213 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN------------------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTED 213 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC------------------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCC
Confidence 2333456666555444331 256778999999999999999999999999987 999999
Q ss_pred CceEe-cCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459 483 KKWRV-FGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 483 g~w~~-f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
|.-.. |..-.+ .-.+-.|++.++....|+. ++.+.|.+|..
T Consensus 214 g~~l~E~RRG~d--~A~iy~iaFSp~~s~Lavs---SdKgTlHiF~l 255 (346)
T KOG2111|consen 214 GTLLQELRRGVD--RADIYCIAFSPNSSWLAVS---SDKGTLHIFSL 255 (346)
T ss_pred CcEeeeeecCCc--hheEEEEEeCCCccEEEEE---cCCCeEEEEEe
Confidence 86321 211111 1225578887776555544 44566777665
No 234
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=2.1e-06 Score=90.25 Aligned_cols=145 Identities=19% Similarity=0.305 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCc-EEEEEec--C---------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 257 GDAVCASIAPEQQ-ILAVGTR--R---------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 257 ~~~v~v~~sp~~~-~la~g~~--d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
.+.+.+.||+.|. +|+.++. | .++.+.+++. .+.. ... ...|+|.++.|+|+|+-+++
T Consensus 218 adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~--V~L-------~k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 218 ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVS--VPL-------LKEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEE--Eec-------CCCCCceEEEECCCCCEEEE
Confidence 3556688898776 3333433 2 2455555542 2222 222 14899999999999987776
Q ss_pred --EEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecCCcceE
Q 005459 325 --GWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEGSSERV 396 (696)
Q Consensus 325 --g~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~~~~~v 396 (696)
|..=..+.++|+.+.. +..+.. ..=+.+.|+|.+ +.++-+. .+-+||..+.+++.........+
T Consensus 288 vyGfMPAkvtifnlr~~~-v~df~e---gpRN~~~fnp~g----~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~ 359 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLRGKP-VFDFPE---GPRNTAFFNPHG----NIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV 359 (566)
T ss_pred EEecccceEEEEcCCCCE-eEeCCC---CCccceEECCCC----CEEEEeecCCCCCceEEEeccchhhccccccCCceE
Confidence 4556789999988764 444433 344678899998 6554333 78899999999999888877888
Q ss_pred EEEec-ceeeeeccC------CCCceeeee
Q 005459 397 LIFSF-GKCCLNRGV------SGMTYARQV 419 (696)
Q Consensus 397 ~~~~~-~~~~~s~~~------d~~~~~w~~ 419 (696)
..+++ |..++|+.. |+.+++|+.
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 99999 888877654 556677764
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.82 E-value=1.8e-05 Score=84.06 Aligned_cols=107 Identities=12% Similarity=0.174 Sum_probs=64.0
Q ss_pred EEEEeCCcEEEEee-ccCCceeeeeeecc----e---e-----------cCCCCeEEEEEcCCCcEEEEEec-CCeEEEE
Q 005459 224 FVLYSNGQLMSCSV-SKKGLKLAEFIKID----K---E-----------LGSGDAVCASIAPEQQILAVGTR-RGVVELY 283 (696)
Q Consensus 224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~~~----~---~-----------~~~~~~v~v~~sp~~~~la~g~~-dg~v~vw 283 (696)
+++++||+.++++. .++++.++++.... . . +....+-++.++|+++++.+... ...|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 44667777666654 35555554443210 0 0 11233445999999998877543 4589999
Q ss_pred EccCCCc-eee--EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc
Q 005459 284 DLAESAS-LIR--TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS 337 (696)
Q Consensus 284 ~~~~~~~-~~~--~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~ 337 (696)
+++.... +.. .+.. .....-+.++|+|||+++.+..+ +++|.++++.
T Consensus 172 ~~~~~~~~l~~~~~~~~-------~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKV-------PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTS-TEEEEEEEEC-------STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEeCCCceEEEeecccc-------ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9987332 322 2222 13345789999999998866654 6789999987
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=8.2e-07 Score=97.48 Aligned_cols=124 Identities=14% Similarity=0.188 Sum_probs=68.2
Q ss_pred EEEEeCCcEEEEeec-cCCceee--eeeecce--ecCCCC-eEEEEEcCCCcEEEEEec-CCeEEE--EEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVS-KKGLKLA--EFIKIDK--ELGSGD-AVCASIAPEQQILAVGTR-RGVVEL--YDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~-d~~~~~~--~~~~~~~--~~~~~~-~v~v~~sp~~~~la~g~~-dg~v~v--w~~~~~~~~~~~ 294 (696)
..++|||+.++..+. ++...+| +...++. +..... ....+|+|||+.|+..+. ++..++ +|+++ +. ...
T Consensus 311 p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~ 388 (448)
T PRK04792 311 PSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLET-GA-MQV 388 (448)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCC-CC-eEE
Confidence 346788887766554 3334444 4333321 111111 123689999999988765 444445 55554 33 233
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc---EEEEEccCCeeEEEeecccccceecccccC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG---LTVWSVSGCRLMSTIRQISLSSISSPIVKP 360 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~---v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp 360 (696)
+.. . ......+|+|||+.|+....+++ +.+++..+. ....+..+ ...+..++|+|
T Consensus 389 lt~--------~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~-~~~~l~~~-~g~~~~p~Wsp 446 (448)
T PRK04792 389 LTS--------T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR-FKARLPAG-QGEVKSPAWSP 446 (448)
T ss_pred ccC--------C-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCC-CCCcCCCccCC
Confidence 332 1 11223479999998887665443 666777544 44455443 33456677766
No 237
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.80 E-value=4.8e-08 Score=101.51 Aligned_cols=118 Identities=18% Similarity=0.261 Sum_probs=97.9
Q ss_pred CcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcC--CCcEEEEEe
Q 005459 203 HKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAP--EQQILAVGT 275 (696)
Q Consensus 203 ~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp--~~~~la~g~ 275 (696)
.+.+|.++|.+++ ++.||.+++++++|..+.+||...-+.+ .||..-|. +.|-| ..+++++|.
T Consensus 45 eL~GH~GCVN~Le----------Wn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 45 ELTGHTGCVNCLE----------WNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhccccceeccee----------ecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 5668888998887 6789999999999999999998754443 67887665 89988 578999999
Q ss_pred cCCeEEEEEccCC---------CceeeEEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccC
Q 005459 276 RRGVVELYDLAES---------ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 276 ~dg~v~vw~~~~~---------~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~ 338 (696)
.|..|+|||++.. ...++.+.. |+..|..|+-.|+| +.+-++++||+++-+|+..
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~c--------ht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSC--------HTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhh--------hhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 9999999999851 123344455 99999999999999 8999999999999999865
No 238
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=6.9e-07 Score=93.72 Aligned_cols=276 Identities=18% Similarity=0.178 Sum_probs=171.0
Q ss_pred CCCCeEE-EEEcCCCcE-EEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEE
Q 005459 255 GSGDAVC-ASIAPEQQI-LAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLT 332 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~-la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~ 332 (696)
++..+.. +.++|||++ +|+|.--=.|++||+.. ..+...-+. ....|...-.|-|-..++---.|++|-
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlan-LSLKFERhl--------Dae~V~feiLsDD~SK~v~L~~DR~Ie 119 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLAN-LSLKFERHL--------DAEVVDFEILSDDYSKSVFLQNDRTIE 119 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccc-ceeeeeecc--------cccceeEEEeccchhhheEeecCceee
Confidence 4555555 999999996 57788888999999986 443332222 345577777777877777777888888
Q ss_pred EEEccCCeeEEEeecccccceeccccc-CCCCCCcccee--cceeeEEEcCCCceEEEEecCCcceEEEEec---ceeee
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVK-PNQDCKYEPLM--SGTSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCL 406 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~s-p~~~~~~~~l~--sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~ 406 (696)
+-.-.|...-..++-.|.+ +.++ |. | +.+. +|..+.-.+++.|+.+..+.-....+++++. -..++
T Consensus 120 fHak~G~hy~~RIP~~GRD----m~y~~~s--c--Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla 191 (703)
T KOG2321|consen 120 FHAKYGRHYRTRIPKFGRD----MKYHKPS--C--DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLA 191 (703)
T ss_pred ehhhcCeeeeeecCcCCcc----ccccCCC--c--cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEE
Confidence 8776665433333322111 1111 11 1 3333 3337777888888887776555556655544 45667
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC-----ceEEEEEcCCCCEEEEEeCCccE-EEEc
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW-----PVQHVAASKDGMFLAVAGLHGLI-LYDI 480 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-----~I~~va~s~dG~~la~ag~dG~i-~w~~ 480 (696)
.|+.++.+..||......--. +.++.....|.+ .|.++.|+.||-.+|+|..+|.+ +||+
T Consensus 192 ~Gt~~g~VEfwDpR~ksrv~~--------------l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 192 CGTEDGVVEFWDPRDKSRVGT--------------LDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ecccCceEEEecchhhhhhee--------------eecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 777799999999765432111 111222122222 39999999999999999999999 9999
Q ss_pred cCCceEecCCccceeeeEEEeEeee----CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCC-ccEEEEccCCE
Q 005459 481 RQKKWRVFGDITQEQKIQSKGLLWL----GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLA-KPIVMDVYEDY 555 (696)
Q Consensus 481 ~sg~w~~f~~~~~e~~~~v~~~~w~----~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~ 555 (696)
.+.+=-+.. .|..++.+..+.|. ++.++++ +...+|+|+.. +...+...++... .-+.+.++...
T Consensus 258 Ra~~pl~~k--dh~~e~pi~~l~~~~~~~q~~v~S~------Dk~~~kiWd~~--~Gk~~asiEpt~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 258 RASKPLLVK--DHGYELPIKKLDWQDTDQQNKVVSM------DKRILKIWDEC--TGKPMASIEPTSDLNDFCFVPGSGM 327 (703)
T ss_pred ccCCceeec--ccCCccceeeecccccCCCceEEec------chHHhhhcccc--cCCceeeccccCCcCceeeecCCce
Confidence 987632222 34555667789995 3455553 55789999885 2222233332222 11344456666
Q ss_pred EEEEEcCceEEEEEEE
Q 005459 556 ILVTYRPFDVHIFHVK 571 (696)
Q Consensus 556 llv~~~d~~~~l~~~~ 571 (696)
++++-.+..+.-|.+.
T Consensus 328 ~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIP 343 (703)
T ss_pred EEEecCCCcceeEEcc
Confidence 6666666666666543
No 239
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=4.4e-07 Score=89.64 Aligned_cols=257 Identities=10% Similarity=0.057 Sum_probs=136.8
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcc-----cccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-C
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKS-----IQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-D 141 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~ 141 (696)
.-+.++.|..+|.+||+|..+|.+.+|.-....+. ...+.|.++=..+.+++ +++++ ..+.-+.. .
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSle--ieEKi------nkIrw~~~~n 97 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLE--IEEKI------NKIRWLDDGN 97 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhh--hhhhh------hhceecCCCC
Confidence 44568999999999999999999999976543321 11222333322222221 12221 11222211 2
Q ss_pred CCeEEEEecCCcEEEEecCCccccc--eee--ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEc
Q 005459 142 NKHMLLGLSDGSLYSISWKGEFYGA--FEL--VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELC 217 (696)
Q Consensus 142 ~~~llv~t~~g~i~~~~w~~~~~~~--~~~--~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~ 217 (696)
...+++.+.|.+|..|.-....... ..+ ...|.....++..-..+..... + ...++..-..|.-.|.+
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v---e-a~prRv~aNaHtyhiNS---- 169 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV---E-ASPRRVYANAHTYHINS---- 169 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee---e-eeeeeeccccceeEeee----
Confidence 3678888999999885332111110 000 0001111111100000000000 0 00111112223333333
Q ss_pred cCcceEEEEEeCCcEEEEeeccCCceeeeeeecce-e-----cC-----CCCeEE-EEEcCC-CcEEEEEecCCeEEEEE
Q 005459 218 LPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDK-E-----LG-----SGDAVC-ASIAPE-QQILAVGTRRGVVELYD 284 (696)
Q Consensus 218 ~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~-~-----~~-----~~~~v~-v~~sp~-~~~la~g~~dg~v~vw~ 284 (696)
+.+.+|+..+++ ++|-.+++|++..... . .. -...+. ..|+|. .++++-.+.-|+||+-|
T Consensus 170 ------IS~NsD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 170 ------ISVNSDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred ------eeecCccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 457888888774 5677789998763321 1 11 123344 789995 67888889999999999
Q ss_pred ccCCCce---eeEEeeccCCCC----CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc-cCCeeEEEeecc
Q 005459 285 LAESASL---IRTVSLYDWGYS----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV-SGCRLMSTIRQI 348 (696)
Q Consensus 285 ~~~~~~~---~~~~~~~~~~~~----~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~-~~~~~~~~l~~~ 348 (696)
++...-+ .+.+....-|.+ .+-...|.++.||++|+++++-.. -+|++||+ ...+.+.+.+-|
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh 313 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVH 313 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeeh
Confidence 9852211 111221111111 122346889999999999998776 79999999 555556665544
No 240
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.75 E-value=7.4e-07 Score=97.46 Aligned_cols=183 Identities=18% Similarity=0.139 Sum_probs=107.5
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE-EEcC
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-GWKS 328 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las-g~~D 328 (696)
..+...+. .+|+|||+.||.+..+ ..|++|++.+ +.. ..+.. +.+.+.+++|+|||+.|+. ...+
T Consensus 186 ~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-g~~-~~~~~--------~~~~~~~~~~spDg~~l~~~~~~~ 255 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-GQR-EKVAS--------FPGMNGAPAFSPDGSKLAVSLSKD 255 (417)
T ss_pred ecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-CCE-EEeec--------CCCCccceEECCCCCEEEEEECCC
Confidence 34444454 8999999999988754 4899999986 433 23333 5566778999999998764 4444
Q ss_pred C--cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEecC-CcceEEEE
Q 005459 329 R--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIEEG-SSERVLIF 399 (696)
Q Consensus 329 g--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~~~-~~~~v~~~ 399 (696)
+ .|.+|++.++.. ..+..+ ......+.|+|++ +.++..+ .+..++..+++....... ....-..+
T Consensus 256 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~s~dg----~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~ 329 (417)
T TIGR02800 256 GNPDIYVMDLDGKQL-TRLTNG-PGIDTEPSWSPDG----KSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSW 329 (417)
T ss_pred CCccEEEEECCCCCE-EECCCC-CCCCCCEEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEE
Confidence 4 588889887653 334333 2334567888987 5544222 466677766654333222 11111455
Q ss_pred ec-ceeeeeccCCC---CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 400 SF-GKCCLNRGVSG---MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 400 ~~-~~~~~s~~~d~---~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
++ ++.++..+.+. .+.++++..+..+ . +.. .......+|+|||++|+.+..++
T Consensus 330 spdg~~i~~~~~~~~~~~i~~~d~~~~~~~---------------~--l~~-----~~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 330 SPDGDLIAFVHREGGGFNIAVMDLDGGGER---------------V--LTD-----TGLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CCCCCEEEEEEccCCceEEEEEeCCCCCeE---------------E--ccC-----CCCCCCceECCCCCEEEEEEeCC
Confidence 55 55555544443 2333333222111 0 111 11233458999999998887765
No 241
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=8e-08 Score=98.76 Aligned_cols=293 Identities=13% Similarity=0.119 Sum_probs=173.7
Q ss_pred cCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcC--CCcEEEEEec
Q 005459 204 KFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAP--EQQILAVGTR 276 (696)
Q Consensus 204 ~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp--~~~~la~g~~ 276 (696)
+..|.+++..+. |...|..+++++.|..+.+||-...... .||..-+. ..|-| +.+.|++.+.
T Consensus 138 L~~H~GcVntV~----------FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 138 LNKHKGCVNTVH----------FNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred ccCCCCccceee----------ecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 345666776655 7789999999999999999997765443 57777776 66767 4678999999
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCC-CCeEEEEEcCCcEEEEEccCCeeEEEe--eccccc--
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPD-NSAFAVGWKSRGLTVWSVSGCRLMSTI--RQISLS-- 351 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spd-g~~lasg~~Dg~v~vW~~~~~~~~~~l--~~~~~~-- 351 (696)
||.|++=.+...+....+....+ |.|+|..++.-|+ -+-|.++++|+.+.-.|+........+ +.+...
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~------h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAP------HEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKER 281 (559)
T ss_pred cCceeeeeeccccceecceeccc------ccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccc
Confidence 99999988776443332332211 9999999999995 457899999999999998655432221 222122
Q ss_pred -ceecccccCCCCCCccceecce--eeEEEcCCCceEE------EEecC-C-----cceEEEEec---ceeeeeccCCCC
Q 005459 352 -SISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY------AIEEG-S-----SERVLIFSF---GKCCLNRGVSGM 413 (696)
Q Consensus 352 -~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~------~~~~~-~-----~~~v~~~~~---~~~~~s~~~d~~ 413 (696)
...+++..|.. .++..+.|. -.++++....+.- ..+-. | .-.|..+.+ +..++++-.|--
T Consensus 282 v~L~~Ia~~P~n--t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~ 359 (559)
T KOG1334|consen 282 VGLYTIAVDPRN--TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED 359 (559)
T ss_pred eeeeeEecCCCC--ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc
Confidence 34555666653 223333333 4455554332211 11100 1 112222222 222222222222
Q ss_pred ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCC--ceEEEEE-cCCCCEEEEEeCCccE-EEEccCCceEecC
Q 005459 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNW--PVQHVAA-SKDGMFLAVAGLHGLI-LYDIRQKKWRVFG 489 (696)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~--~I~~va~-s~dG~~la~ag~dG~i-~w~~~sg~w~~f~ 489 (696)
++++.-..+. |.+.....-..--+|..|++|.. .|..+-| -|...|+++|+.-|.| +|+-.+++.-.|.
T Consensus 360 IYLF~~~~~~-------G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 360 IYLFNKSMGD-------GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred eEEecccccc-------CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 3222111110 00000000011113556999843 4777754 6889999999999999 9999998765553
Q ss_pred Cccceeee-EEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459 490 DITQEQKI-QSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 490 ~~~~e~~~-~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
. .+- .|.++.=+++.-|.|+. +-++.|+||..
T Consensus 433 e----gDr~VVNCLEpHP~~PvLAsS---Gid~DVKIWTP 465 (559)
T KOG1334|consen 433 E----GDRHVVNCLEPHPHLPVLASS---GIDHDVKIWTP 465 (559)
T ss_pred h----cccceEeccCCCCCCchhhcc---CCccceeeecC
Confidence 2 222 45578888877666633 45588999976
No 242
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.4e-05 Score=86.86 Aligned_cols=461 Identities=17% Similarity=0.171 Sum_probs=235.8
Q ss_pred ccceeeeCCCCCCCCCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcCCC-----
Q 005459 6 GWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSPDT----- 79 (696)
Q Consensus 6 g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsPDg----- 79 (696)
-||+.++..+. ++.-..+..+|.| |+|-++.+.|.+=|.+ .-..+. +++.| ..++.+.|+|-.
T Consensus 4 ~s~~tlpG~l~--~sN~~A~Dw~~~G-LiAygshslV~VVDs~-s~q~iq-------sie~h~s~V~~VrWap~~~p~~l 72 (1062)
T KOG1912|consen 4 VSDHTLPGPLS--RSNRNAADWSPSG-LIAYGSHSLVSVVDSR-SLQLIQ-------SIELHQSAVTSVRWAPAPSPRDL 72 (1062)
T ss_pred cccccCCCCCC--cccccccccCccc-eEEEecCceEEEEehh-hhhhhh-------ccccCccceeEEEeccCCCchhc
Confidence 36666654433 2344456677777 8899999999999986 222222 22222 456788887632
Q ss_pred -----c--EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCC-CeEEEEecC
Q 005459 80 -----K--LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN-KHMLLGLSD 151 (696)
Q Consensus 80 -----~--~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~-~~llv~t~~ 151 (696)
. +||++.-.|.|.+||.........+..+..+-+.+ .+..- ..+. +-+++-...
T Consensus 73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl---~W~~~---------------rd~Srd~LlaIh~s 134 (1062)
T KOG1912|consen 73 LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDL---CWVPA---------------RDDSRDVLLAIHGS 134 (1062)
T ss_pred cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhe---eeeec---------------cCcchheeEEecCC
Confidence 2 46666677999999998665433222222221111 00000 0112 334444444
Q ss_pred CcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcC-CCcccEEEEEEccCc-ceEEEEEeC
Q 005459 152 GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKF-PISSAIIWLELCLPM-RLLFVLYSN 229 (696)
Q Consensus 152 g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~~~s~d 229 (696)
..+.. |+..++..+ +.. -......++.++|+. ..++..+..
T Consensus 135 s~lvL--wntdtG~k~-----------------------------------Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~ 177 (1062)
T KOG1912|consen 135 STLVL--WNTDTGEKF-----------------------------------WKYDYSHEILSCFRVDPFDSRHFCVLGSK 177 (1062)
T ss_pred cEEEE--EEccCCcee-----------------------------------eccccCCcceeeeeeCCCCcceEEEEccC
Confidence 55544 543333211 000 012233445666665 455556666
Q ss_pred CcEEEEee-----ccCCceeeeeeec----cee-----cC--C----CCe----EE--EEEcCCCcEEEEEecCCeEEEE
Q 005459 230 GQLMSCSV-----SKKGLKLAEFIKI----DKE-----LG--S----GDA----VC--ASIAPEQQILAVGTRRGVVELY 283 (696)
Q Consensus 230 G~~~~~~~-----~d~~~~~~~~~~~----~~~-----~~--~----~~~----v~--v~~sp~~~~la~g~~dg~v~vw 283 (696)
|.++.+.. ++...+...+.+. ... .+ + ..+ .| .+|+|..+-+....-...+.|+
T Consensus 178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~ 257 (1062)
T KOG1912|consen 178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVF 257 (1062)
T ss_pred ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEE
Confidence 66555432 1222333332221 000 00 0 011 13 6889988877777788899999
Q ss_pred EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC--eEEEEEcCCcEEEEEccCC-------------------eeE
Q 005459 284 DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS--AFAVGWKSRGLTVWSVSGC-------------------RLM 342 (696)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~--~lasg~~Dg~v~vW~~~~~-------------------~~~ 342 (696)
|++- ...+.+... ..+.+.-+.|-||++ .|+..-.||.+.+|--... .++
T Consensus 258 dle~-~~~l~vvpi--------er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~v 328 (1062)
T KOG1912|consen 258 DLEY-ECCLAVVPI--------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVV 328 (1062)
T ss_pred cchh-hceeEEEEe--------ccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEE
Confidence 9876 566666766 678889999999887 7899999999999965331 122
Q ss_pred EEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCC-cceEEEEecce--------eeeeccCCCC
Q 005459 343 STIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS-SERVLIFSFGK--------CCLNRGVSGM 413 (696)
Q Consensus 343 ~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~-~~~v~~~~~~~--------~~~s~~~d~~ 413 (696)
+..+.. .....+..|..+.....+.+.....+|.+.++++-...... ..-+.-|+|.. .+.+-+.||.
T Consensus 329 r~m~~~---rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~ 405 (1062)
T KOG1912|consen 329 RPMEEF---RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGS 405 (1062)
T ss_pred eechhc---ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCC
Confidence 222221 01111112322111233445557788988876654333221 11224444411 1222333331
Q ss_pred ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee-----cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEe
Q 005459 414 TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI-----SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRV 487 (696)
Q Consensus 414 ~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-----~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~ 487 (696)
.. .|. ..-+.-..|+--+ +.|-|--.+ ..+|+|...|++ ++|+.++.-.
T Consensus 406 h~-----sGs-------------~~~~~~p~p~~t~~~~~p~~n~~~~~~------pLvAvGT~sGTV~vvdvst~~v~- 460 (1062)
T KOG1912|consen 406 HS-----SGS-------------TCVRMRPMPELTKVENDPGGNTPAGTV------PLVAVGTNSGTVDVVDVSTNAVA- 460 (1062)
T ss_pred CC-----CCc-------------eeeecccCcccceeecCCCCCccceee------eeEEeecCCceEEEEEecchhhh-
Confidence 10 000 0000001111000 111111111 268999999999 9999987521
Q ss_pred cCCccceeeeEEEeEeeeCcE-EEEEEeecCCC---eE--EEEEeeCC-CCCccceeEEeecCC--ccEEEEccCCEEEE
Q 005459 488 FGDITQEQKIQSKGLLWLGKI-IVVCNYIDSSN---TY--ELLFYPRY-HLDQSSLLCRKSLLA--KPIVMDVYEDYILV 558 (696)
Q Consensus 488 f~~~~~e~~~~v~~~~w~~~~-lv~~~~~~~~~---~~--~lr~y~~~-~l~~~~~~~~~~~~~--~~l~~~~~~~~llv 558 (696)
....-+.-.|+|+-|.+.. ++..+|+...+ .+ ++.+-+.. .+...+...+++-.+ ..+-.+..+.||++
T Consensus 461 --~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai 538 (1062)
T KOG1912|consen 461 --ASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI 538 (1062)
T ss_pred --hhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEE
Confidence 1111223348899998765 55555543222 11 33333332 333333222222222 33556678999999
Q ss_pred EEcCceEEEEEEE
Q 005459 559 TYRPFDVHIFHVK 571 (696)
Q Consensus 559 ~~~d~~~~l~~~~ 571 (696)
...+.-..+|++.
T Consensus 539 ~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 539 LFRREPLEIWDLK 551 (1062)
T ss_pred EecccchHHHhhc
Confidence 8888888888874
No 243
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.73 E-value=9.1e-05 Score=78.60 Aligned_cols=289 Identities=14% Similarity=0.113 Sum_probs=147.7
Q ss_pred CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----CcEEEEEEEEecCcccccCCCCCCCcee
Q 005459 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----SLYLHIFKVQITEKSIQIGGKQPSGLFF 115 (696)
Q Consensus 40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----dg~l~l~~l~~~~~~~~~~~~~~~~~~~ 115 (696)
+.|+++..+.....+...... ..-+.-..++++||+++|.+... +|.|..|++......+.
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~----------- 77 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT----------- 77 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE-----------
T ss_pred CcEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE-----------
Confidence 578888773222223222211 11223356999999999999876 57899999875421111
Q ss_pred eeeeEEEeeeccccccceeEEEeeeCCCeEEEEec-CCcEEEEecCCccccceeeccCCCCCcccccccccCCCCccccc
Q 005459 116 IKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLS-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVD 194 (696)
Q Consensus 116 ~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~ 194 (696)
........+....-.++.++++.++++.. +|.+..+..+..-....... .+......++
T Consensus 78 ------~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~-------~~~~~g~g~~------- 137 (345)
T PF10282_consen 78 ------LLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQ-------TVRHEGSGPN------- 137 (345)
T ss_dssp ------EEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEE-------EEESEEEESS-------
T ss_pred ------EeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeee-------ecccCCCCCc-------
Confidence 11111112222233356678888888875 67888877764311110000 0000000000
Q ss_pred CCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeecc---------eecCCCCeEEEEE
Q 005459 195 TSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKID---------KELGSGDAVCASI 264 (696)
Q Consensus 195 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~---------~~~~~~~~v~v~~ 264 (696)
..........+ +.++|||+.+++.. ....+.+++..... ....-..+-.++|
T Consensus 138 --------~~rq~~~h~H~----------v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 138 --------PDRQEGPHPHQ----------VVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp --------TTTTSSTCEEE----------EEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred --------cccccccccee----------EEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 00011222333 45788888766543 23345555543221 0122244556999
Q ss_pred cCCCcEEEEEe-cCCeEEEEEccCC-Cce--eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEEEcc--
Q 005459 265 APEQQILAVGT-RRGVVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVWSVS-- 337 (696)
Q Consensus 265 sp~~~~la~g~-~dg~v~vw~~~~~-~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW~~~-- 337 (696)
+|+++++.+.+ .+++|.+|+++.. +.. +..+.. .+...........|++||||++|.++.+ +++|.++++.
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTIST--LPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPA 277 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEES--CETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeee--ccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecC
Confidence 99999876655 5789999999831 322 222222 1111112236889999999999887764 5689999993
Q ss_pred CCee--EEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEE
Q 005459 338 GCRL--MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAI 388 (696)
Q Consensus 338 ~~~~--~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~ 388 (696)
++++ +..+.-.+ ..-..++++|++ +.++.+. .+..++.+++.|...
T Consensus 278 ~g~l~~~~~~~~~G-~~Pr~~~~s~~g----~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 278 TGTLTLVQTVPTGG-KFPRHFAFSPDG----RYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTTEEEEEEEEESS-SSEEEEEE-TTS----SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCC-CCccEEEEeCCC----CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 3332 22332221 224667778887 5555332 233345556655444
No 244
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-06 Score=85.16 Aligned_cols=288 Identities=14% Similarity=0.150 Sum_probs=156.2
Q ss_pred CceEEEEEeCCcEEEEE-ccCeEEEeecCCcee----eEEEe------ecChHHHhhcccccEEEEcCCCc--EEEEEec
Q 005459 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKV----RLGKY------KRDSESVQREGENLQAVWSPDTK--LIAVVTS 87 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~----~l~~~------~r~~~sl~~~G~~~~v~wsPDg~--~lav~t~ 87 (696)
-...|.|+.+|.+||++ .++.|.++.-.+... -...+ -.-.++++-...+..+.|-+++. .+.+.|.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 44558899999999999 467888886542221 11111 01134555556778999999886 5778899
Q ss_pred CcEEEEEEEEecCccc--c-cCCCCC----CCceeeee---eEEE---eeeccccccceeEEEeeeCC-CeEEEEecCCc
Q 005459 88 SLYLHIFKVQITEKSI--Q-IGGKQP----SGLFFIKI---SLVL---NEQLPFAEKGLSVSNIVSDN-KHMLLGLSDGS 153 (696)
Q Consensus 88 dg~l~l~~l~~~~~~~--~-~~~~~~----~~~~~~~~---~l~~---~~~~~~~~~~~~v~~~~~~~-~~llv~t~~g~ 153 (696)
|.+|++|++.....+. + .+...+ ..+.++.+ ++.. ..++....+.-.|.+++.+. .+-++..+|=.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence 9999999997544321 0 000001 11111111 1111 11122345566666666544 23444445555
Q ss_pred EEEEecCCcc-ccceeec-cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc-eEEEEEeCC
Q 005459 154 LYSISWKGEF-YGAFELV-HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR-LLFVLYSNG 230 (696)
Q Consensus 154 i~~~~w~~~~-~~~~~~~-~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~s~dG 230 (696)
|-+ |+-+. .+.+.+. .+|+--. +-..-|++-+|+|..+ .++.-++.|
T Consensus 187 INL--Wnlei~d~sFnIVDIKP~nmE----------------------------eLteVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 187 INL--WNLEIIDQSFNIVDIKPANME----------------------------ELTEVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred eee--ccccccCCceeEEEccccCHH----------------------------HHHHHHhhhccCHhHccEEEEecCCC
Confidence 544 65443 2333221 1221100 0112356667888774 333334444
Q ss_pred cEEEEeec-----cCCceeeee-eeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccC
Q 005459 231 QLMSCSVS-----KKGLKLAEF-IKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDW 300 (696)
Q Consensus 231 ~~~~~~~~-----d~~~~~~~~-~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~ 300 (696)
.+-++-.. |..-++... +.+... .+.-..+. +.|+++|++|.+-.- -+|++||+....+++.+...++.
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~ 315 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEY 315 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHh
Confidence 44443222 111111110 011000 11123456 899999999987432 69999999776777777776432
Q ss_pred C-------CCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 301 G-------YSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 301 ~-------~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
. |....--.=..++||-++.++++|+..+-.+++++..+
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 11111112245899999999999999999999996544
No 245
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.71 E-value=2.2e-07 Score=103.97 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=106.4
Q ss_pred EEeCCcEEEEeeccCCceeeeeee---cceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceee-EEeeccC
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIK---IDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIR-TVSLYDW 300 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~-~~~~~~~ 300 (696)
.+++--.+++++--+.+-+|.... +..+.+|++.+. +.++.||+++|+.+.|.++|+|++++ .+... +.-+
T Consensus 141 ~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-~~~~~~~~fg--- 216 (967)
T KOG0974|consen 141 DSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-REVLGCTGFG--- 216 (967)
T ss_pred ccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-ccccCccccc---
Confidence 344444555556666677776542 223478999888 99999999999999999999999998 44333 4444
Q ss_pred CCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459 301 GYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (696)
Q Consensus 301 ~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~ 377 (696)
|++.|..+.|.|. .++++++|.+.++|+..+..+. .+.+|--..+..++.+++. ...+++. .+++
T Consensus 217 -----HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~----~~~vT~g~Ds~lk~ 284 (967)
T KOG0974|consen 217 -----HSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGV----IIKVTGGNDSTLKL 284 (967)
T ss_pred -----ccceeEEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCc----eEEEeeccCcchhh
Confidence 9999999999998 9999999999999987776544 7777766678888887775 4555554 6777
Q ss_pred EcCC
Q 005459 378 WDEY 381 (696)
Q Consensus 378 W~~~ 381 (696)
|+..
T Consensus 285 ~~l~ 288 (967)
T KOG0974|consen 285 WDLN 288 (967)
T ss_pred hhhh
Confidence 7654
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.70 E-value=7.1e-07 Score=94.35 Aligned_cols=123 Identities=17% Similarity=0.161 Sum_probs=109.9
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
|-..||-|...|.|.+|++.. ++....+... .|.+.|.++.|+.+-.+|-|++.|+.+..|+...++.++..+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~-g~it~~~st~------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~ 141 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAG-GEITAKLSTD------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK 141 (541)
T ss_pred CceEEEeecCCccEEEEEecC-CeEEEEEecC------CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec
Confidence 445789999999999999987 7777777642 399999999999999999999999999999999999999888
Q ss_pred cccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEecCCcceEEEEec
Q 005459 347 QISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (696)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (696)
.. ...+.++..+||+ ..+++++ ++++|+.++.+++..+.||...|-.++|
T Consensus 142 ~~-~~~~~sl~is~D~----~~l~~as~~ik~~~~~~kevv~~ftgh~s~v~t~~f 192 (541)
T KOG4547|consen 142 EQ-KPLVSSLCISPDG----KILLTASRQIKVLDIETKEVVITFTGHGSPVRTLSF 192 (541)
T ss_pred cC-CCccceEEEcCCC----CEEEeccceEEEEEccCceEEEEecCCCcceEEEEE
Confidence 77 6779999999998 8888887 9999999999999999999999977776
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=3.7e-06 Score=91.59 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=77.3
Q ss_pred EEEEeCCcEEEEee-ccCCceeeeeee------cceecCCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCcee
Q 005459 224 FVLYSNGQLMSCSV-SKKGLKLAEFIK------IDKELGSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLI 292 (696)
Q Consensus 224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~------~~~~~~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~ 292 (696)
..++|||+.++..+ .++..++|.... .+.+..+...+. .+|||||+.||..+.+ ..|.+||+.+ ++.
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~~- 363 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GRD- 363 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CCe-
Confidence 35789998766655 355555664321 112223333333 8999999999987653 4689999876 443
Q ss_pred eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc---CCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 293 RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK---SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~---Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+.+.. ....+....|+|||+.|+.... +..+.+|++.+++...-..+ ...+..++|+|.
T Consensus 364 ~~Lt~--------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~--~g~~~~p~Ws~~ 425 (428)
T PRK01029 364 YQLTT--------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG--SGEKRFPSWGAF 425 (428)
T ss_pred EEccC--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCcccCceecCC
Confidence 33333 2345677999999998875443 24688888887764333222 233556666664
No 248
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.69 E-value=2e-05 Score=83.77 Aligned_cols=260 Identities=14% Similarity=0.125 Sum_probs=140.8
Q ss_pred cEE-EEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 269 QIL-AVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 269 ~~l-a~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
+++ ++-..+|.|.|.|.++ .+.+.++.. ....-..+.|+|||+++.+++.||.|.++|+.+.+.+.+++.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t-~~~~~~i~~--------~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT-NKVVARIPT--------GGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT--SEEEEEE---------STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCC-CeEEEEEcC--------CCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 445 4456689999999887 778888876 333345578999999999999999999999999999999986
Q ss_pred ccccceecccccCCCCCCccceecce----eeEEEcCCCceEEEEecCC-------cceE---EEEeccee-eeeccCCC
Q 005459 348 ISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIEEGS-------SERV---LIFSFGKC-CLNRGVSG 412 (696)
Q Consensus 348 ~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~~~~-------~~~v---~~~~~~~~-~~s~~~d~ 412 (696)
. . ....++++||+ ++++.+. .+.++|.++.+++...... ..++ +....... +++.-.
T Consensus 77 G-~-~~~~i~~s~DG----~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-- 148 (369)
T PF02239_consen 77 G-G-NPRGIAVSPDG----KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD-- 148 (369)
T ss_dssp S-S-EEEEEEE--TT----TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT--
T ss_pred C-C-CcceEEEcCCC----CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc--
Confidence 5 2 35778999999 8777665 8889999998888765321 1233 22122332 222221
Q ss_pred CceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEE-eCCccE-EEEccCCceEecC-
Q 005459 413 MTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVA-GLHGLI-LYDIRQKKWRVFG- 489 (696)
Q Consensus 413 ~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~a-g~dG~i-~w~~~sg~w~~f~- 489 (696)
+-++|.+...... . +..+............|+|||+|+.+| -.+..+ ++|..+++.....
T Consensus 149 ~~~I~vVdy~d~~----------~-------~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 149 TGEIWVVDYSDPK----------N-------LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp TTEEEEEETTTSS----------C-------EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCeEEEEEecccc----------c-------cceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 2234444322211 0 011222223345678999999987665 445566 9999988754332
Q ss_pred --Cccceee---eEE-E-eEeee----CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE--ccCCEE
Q 005459 490 --DITQEQK---IQS-K-GLLWL----GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYI 556 (696)
Q Consensus 490 --~~~~e~~---~~v-~-~~~w~----~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~l 556 (696)
...++.. +.- . |..|. +...+.. .. . ..+.+++. .+.....+.++...++.+. |++.++
T Consensus 212 ~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~-ig-~---~~v~v~d~---~~wkvv~~I~~~G~glFi~thP~s~~v 283 (369)
T PF02239_consen 212 TGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL-IG-T---DPVSVHDD---YAWKVVKTIPTQGGGLFIKTHPDSRYV 283 (369)
T ss_dssp -SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE-EE------TTT-STT---TBTSEEEEEE-SSSS--EE--TT-SEE
T ss_pred ccccccccccccccCCCcceEEeeccccceeccc-cc-C---Cccccchh---hcCeEEEEEECCCCcceeecCCCCccE
Confidence 2222211 111 1 44563 2233222 11 1 12223433 2334566667777776654 677888
Q ss_pred EEE----EcCceEEEEEE
Q 005459 557 LVT----YRPFDVHIFHV 570 (696)
Q Consensus 557 lv~----~~d~~~~l~~~ 570 (696)
.|. .....+.+++.
T Consensus 284 wvd~~~~~~~~~v~viD~ 301 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDK 301 (369)
T ss_dssp EEE-TT-SSHT-EEEEEC
T ss_pred EeeccCCCCCceEEEEEC
Confidence 884 12245555543
No 249
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=2.8e-07 Score=94.85 Aligned_cols=286 Identities=10% Similarity=0.121 Sum_probs=168.6
Q ss_pred CCceEEEEEeCCcEEEEEcc-CeEEEeecCCceeeEEEeecChHHHhhc-ccccEEEEcC--CCcEEEEEecCcEEEEEE
Q 005459 20 SSQQIIYFKVNNGLLLIASP-CHIELWSSSQHKVRLGKYKRDSESVQRE-GENLQAVWSP--DTKLIAVVTSSLYLHIFK 95 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~-~~v~iW~~~~~~~~l~~~~r~~~sl~~~-G~~~~v~wsP--Dg~~lav~t~dg~l~l~~ 95 (696)
+-+.-|.|+..|..|++.+| .+|.+||-. ...+...+. ..| -.+....|-| +.+.|+..+.||.+++=.
T Consensus 143 GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-~~~~~l~f~------SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 143 GCVNTVHFNQRGDVLASGSDDLQVVVWDWV-SGSPKLSFE------SGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred CccceeeecccCceeeccCccceEEeehhh-ccCcccccc------cccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 44556889999999999965 589999984 222111110 112 2234566777 446899999999998877
Q ss_pred EEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEE--eee-CCCeEEEEecCCcEEEEecCCccccceeeccC
Q 005459 96 VQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSN--IVS-DNKHMLLGLSDGSLYSISWKGEFYGAFELVHS 172 (696)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~--~~~-~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~ 172 (696)
+...... +..+.+..+.+.|.- +.+ +...++.++.|+.+.-++.........
T Consensus 216 i~~t~~~--------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~----- 270 (559)
T KOG1334|consen 216 ILETGYV--------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK----- 270 (559)
T ss_pred eccccce--------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce-----
Confidence 7533211 001111222223322 222 236788888888887665332111100
Q ss_pred CCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCc-EEEEeeccCCceeeeeeecc
Q 005459 173 SNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQ-LMSCSVSKKGLKLAEFIKID 251 (696)
Q Consensus 173 p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~-~~~~~~~d~~~~~~~~~~~~ 251 (696)
+. .. ...........+++ +.|-.. .++++..|.-++++|.....
T Consensus 271 -----------------~~-cr-------~~~~~~~v~L~~Ia----------~~P~nt~~faVgG~dqf~RvYD~R~~~ 315 (559)
T KOG1334|consen 271 -----------------FV-CR-------EADEKERVGLYTIA----------VDPRNTNEFAVGGSDQFARVYDQRRID 315 (559)
T ss_pred -----------------ee-ee-------ccCCccceeeeeEe----------cCCCCccccccCChhhhhhhhcccchh
Confidence 00 00 00000012233333 333322 44445555555555544221
Q ss_pred ee----------------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC-C----------ceeeE-EeeccCCCC
Q 005459 252 KE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES-A----------SLIRT-VSLYDWGYS 303 (696)
Q Consensus 252 ~~----------------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~-~----------~~~~~-~~~~~~~~~ 303 (696)
+. ..+...+|++++.++.-|.+...|-.|.+++-... + ...+. .++
T Consensus 316 ~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKG------ 389 (559)
T KOG1334|consen 316 KEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKG------ 389 (559)
T ss_pred hccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcc------
Confidence 11 22345677999988877777788999999964431 1 11111 333
Q ss_pred CCCCC--CeEEEEE-CCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEE
Q 005459 304 MDDTG--PVSCIAW-TPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQ 377 (696)
Q Consensus 304 ~~h~g--~V~~l~~-spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~ 377 (696)
|.. .|..+-| -|...++++|+..|.|.+|+-.+++++.-+++. ...|+|+.-+|.. ..|++.. .+++
T Consensus 390 --HrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegD-r~VVNCLEpHP~~----PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 390 --HRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGD-RHVVNCLEPHPHL----PVLASSGIDHDVKI 462 (559)
T ss_pred --cccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcc-cceEeccCCCCCC----chhhccCCccceee
Confidence 643 4777775 589999999999999999999999998888875 3479999988886 5555444 8899
Q ss_pred EcCCCceE
Q 005459 378 WDEYGYRL 385 (696)
Q Consensus 378 W~~~~~~l 385 (696)
|.+.+.+.
T Consensus 463 WTP~~~er 470 (559)
T KOG1334|consen 463 WTPLTAER 470 (559)
T ss_pred ecCCcccc
Confidence 99865443
No 250
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=3.4e-07 Score=102.44 Aligned_cols=192 Identities=14% Similarity=0.089 Sum_probs=133.8
Q ss_pred EEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC
Q 005459 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG 152 (696)
Q Consensus 73 v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g 152 (696)
..+.-+.+.+++.+.++.+.+|+...+...... +..+.+.- ....+.-++.+.=++++|+--+
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i---~~~er~~l--------------~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKI---QSDERCTL--------------YSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhc---CCCceEEE--------------EeEEEEeccCcEEEEEeccccc
Confidence 444556778888888888999888644321111 00000000 0001111222334677777788
Q ss_pred cEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcE
Q 005459 153 SLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQL 232 (696)
Q Consensus 153 ~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~ 232 (696)
.|..|.|...... .-+.+|...|.++. ++.||++
T Consensus 156 ~iivW~~~~dn~p------------------------------------~~l~GHeG~iF~i~----------~s~dg~~ 189 (967)
T KOG0974|consen 156 EIIVWKPHEDNKP------------------------------------IRLKGHEGSIFSIV----------TSLDGRY 189 (967)
T ss_pred cEEEEeccccCCc------------------------------------ceecccCCceEEEE----------EccCCcE
Confidence 8888766621111 12345667777765 7889999
Q ss_pred EEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCC
Q 005459 233 MSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDT 307 (696)
Q Consensus 233 ~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~ 307 (696)
+++.+.|.++++|.+.+.+.. .+|...+. +.|.|. .|++++.|-+.++|+.+. ..+.++.. |.
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~--~~l~~y~~--------h~ 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG--TQLEVYDE--------HS 257 (967)
T ss_pred EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc--ceehhhhh--------hh
Confidence 999999999999999877654 57888888 999998 999999999999998764 33445555 65
Q ss_pred C-CeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 308 G-PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 308 g-~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
+ .+..++..++...+.+++.|+++++|+..+.
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 4 5999999999999999999999999998654
No 251
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.69 E-value=7.2e-05 Score=88.40 Aligned_cols=296 Identities=17% Similarity=0.157 Sum_probs=160.9
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEee----ccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEE
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSV----SKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVEL 282 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~----~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~v 282 (696)
....|.+++|-+.....+.++.+|.++.+.- .+..+.+.... -.+..+++||||+.+||..+.+|++.+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-------d~GI~a~~WSPD~Ella~vT~~~~l~~ 146 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-------DSGILAASWSPDEELLALVTGEGNLLL 146 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-------cCcEEEEEECCCcCEEEEEeCCCEEEE
Confidence 3456999999999998899999999888732 22222221111 124445999999999999999999887
Q ss_pred EEccCCCcee------------------------eEEeecc---------CCCCC-------CCCCCeEEEEECCCCCeE
Q 005459 283 YDLAESASLI------------------------RTVSLYD---------WGYSM-------DDTGPVSCIAWTPDNSAF 322 (696)
Q Consensus 283 w~~~~~~~~~------------------------~~~~~~~---------~~~~~-------~h~g~V~~l~~spdg~~l 322 (696)
-+-+- ..+ ..++|.. -|..+ .+...-..|+|-.||+++
T Consensus 147 mt~~f--d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 147 MTRDF--DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred Eeccc--eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 65321 111 1111110 00000 022244579999999999
Q ss_pred EEEEc---C---CcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCC--cc
Q 005459 323 AVGWK---S---RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGS--SE 394 (696)
Q Consensus 323 asg~~---D---g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~--~~ 394 (696)
|+.+- + +.+|||+=+| .+..+.+.- .+--.+++|.|.| ..++ ....+ ..
T Consensus 225 AVss~~~~~~~~R~iRVy~ReG-~L~stSE~v-~gLe~~l~WrPsG----~lIA-----------------~~q~~~~~~ 281 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSREG-ELQSTSEPV-DGLEGALSWRPSG----NLIA-----------------SSQRLPDRH 281 (928)
T ss_pred EEEEEEcCCCceeEEEEECCCc-eEEeccccC-CCccCCccCCCCC----CEEE-----------------EEEEcCCCc
Confidence 99875 2 4788998764 333332210 1111233444443 2222 22111 11
Q ss_pred eEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc
Q 005459 395 RVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG 474 (696)
Q Consensus 395 ~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG 474 (696)
.|+-|.- .| +..|+ +.+| +......|..++|++|+..||+--.|.
T Consensus 282 ~VvFfEr---------NG------Lrhge------------------F~l~--~~~~~~~v~~l~Wn~ds~iLAv~~~~~ 326 (928)
T PF04762_consen 282 DVVFFER---------NG------LRHGE------------------FTLR--FDPEEEKVIELAWNSDSEILAVWLEDR 326 (928)
T ss_pred EEEEEec---------CC------cEeee------------------EecC--CCCCCceeeEEEECCCCCEEEEEecCC
Confidence 1111111 00 00111 1111 122345689999999999999988777
Q ss_pred cEEEEccCCceEecCCccceeeeE----EEeEeeeC---cEEEEEEeecC--------------------------CCeE
Q 005459 475 LILYDIRQKKWRVFGDITQEQKIQ----SKGLLWLG---KIIVVCNYIDS--------------------------SNTY 521 (696)
Q Consensus 475 ~i~w~~~sg~w~~f~~~~~e~~~~----v~~~~w~~---~~lv~~~~~~~--------------------------~~~~ 521 (696)
.-+|-...-.|=+ .||-.+. +..+.|+. ..|.+.+..+. -+..
T Consensus 327 vqLWt~~NYHWYL----Kqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~ 402 (928)
T PF04762_consen 327 VQLWTRSNYHWYL----KQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGN 402 (928)
T ss_pred ceEEEeeCCEEEE----EEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCC
Confidence 3399998888843 2222221 11244542 11211111000 0123
Q ss_pred EEEEeeCC--CCCccceeEEeecCCccEEEEc--cCCEEEEEEcCceEEEEEEEEe
Q 005459 522 ELLFYPRY--HLDQSSLLCRKSLLAKPIVMDV--YEDYILVTYRPFDVHIFHVKLF 573 (696)
Q Consensus 522 ~lr~y~~~--~l~~~~~~~~~~~~~~~l~~~~--~~~~llv~~~d~~~~l~~~~~~ 573 (696)
.|++.|.. ..--.+..+...+++++..+.. ....+++...|+.+.+|.+...
T Consensus 403 ~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 403 KLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 56666654 2233344456667776665553 4444888899999999998764
No 252
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=9.1e-07 Score=88.95 Aligned_cols=143 Identities=20% Similarity=0.225 Sum_probs=108.3
Q ss_pred EEEEeecc--CCceeeeeeeccee----------cCCCCeEE---EEEcCC--CcEEEEEecCCeEEEEEccCCCceeeE
Q 005459 232 LMSCSVSK--KGLKLAEFIKIDKE----------LGSGDAVC---ASIAPE--QQILAVGTRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 232 ~~~~~~~d--~~~~~~~~~~~~~~----------~~~~~~v~---v~~sp~--~~~la~g~~dg~v~vw~~~~~~~~~~~ 294 (696)
++++++.. ..+++||....++. .+-.-+|. +.|-+. ...||+++.-+.||+||.+...+++.+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~ 242 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQ 242 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeE
Confidence 34445544 56778887765332 22223343 778887 889999999999999999975677777
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceecce
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGT 373 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg~ 373 (696)
+.. -..+++++...|+|+.+.+|..-+.+..+|..++++... +++. .++++++..+|.. ..+++++
T Consensus 243 fd~--------~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~-tGsirsih~hp~~----~~las~G 309 (412)
T KOG3881|consen 243 FDF--------LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI-TGSIRSIHCHPTH----PVLASCG 309 (412)
T ss_pred ecc--------ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc-cCCcceEEEcCCC----ceEEeec
Confidence 776 577899999999999999999999999999999887654 7776 6778888888886 6677665
Q ss_pred ---eeEEEcCCCceEEE
Q 005459 374 ---SMMQWDEYGYRLYA 387 (696)
Q Consensus 374 ---~~~~W~~~~~~l~~ 387 (696)
-+++.|.++.+++.
T Consensus 310 LDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 310 LDRYVRIHDIKTRKLLH 326 (412)
T ss_pred cceeEEEeecccchhhh
Confidence 66777777655543
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.65 E-value=6.7e-06 Score=89.90 Aligned_cols=208 Identities=16% Similarity=0.124 Sum_probs=121.0
Q ss_pred eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC---CcEEEEEccCCeeEEEeecccccceec
Q 005459 279 VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS---RGLTVWSVSGCRLMSTIRQISLSSISS 355 (696)
Q Consensus 279 ~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D---g~v~vW~~~~~~~~~~l~~~~~~~v~~ 355 (696)
.|.++|.+ +...+.+.. +...+.+.+|||||+.||.+..+ ..|.+|++.+++... +..+ ...+.+
T Consensus 171 ~l~~~d~~--g~~~~~l~~--------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~-~~~~~~ 238 (417)
T TIGR02800 171 ELQVADYD--GANPQTITR--------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASF-PGMNGA 238 (417)
T ss_pred eEEEEcCC--CCCCEEeec--------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecC-CCCccc
Confidence 56666654 344455555 66779999999999999987654 479999998875432 2222 234567
Q ss_pred ccccCCCCCCcccee-cce-----eeEEEcCCCceEEEEecCCcceE--EEEec-ceeeeec-cCCCCceeeeeeecCCe
Q 005459 356 PIVKPNQDCKYEPLM-SGT-----SMMQWDEYGYRLYAIEEGSSERV--LIFSF-GKCCLNR-GVSGMTYARQVIYGEDR 425 (696)
Q Consensus 356 ~~~sp~~~~~~~~l~-sg~-----~~~~W~~~~~~l~~~~~~~~~~v--~~~~~-~~~~~s~-~~d~~~~~w~~~~~~~~ 425 (696)
++|+|++ +.++ +.. .+..|+.++++...... +.... ..+++ ++.++.. ..++...+|.+.....+
T Consensus 239 ~~~spDg----~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 239 PAFSPDG----SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred eEECCCC----CEEEEEECCCCCccEEEEECCCCCEEECCC-CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8899998 5443 221 57778887765543332 22111 34555 5555433 33333333332211110
Q ss_pred EEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCc---cE-EEEccCCceEecCCccceeeeEEEe
Q 005459 426 LLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHG---LI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (696)
Q Consensus 426 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~~~v~~ 501 (696)
...+..+...+...+|||||++++.++.++ .+ +||+.++.++.+..... ...
T Consensus 314 -------------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~-----~~~ 369 (417)
T TIGR02800 314 -------------------VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGL-----DES 369 (417)
T ss_pred -------------------EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCC-----CCC
Confidence 111112233456779999999999998876 67 99998887766543211 123
Q ss_pred Eeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 502 LLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 502 ~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
..|. +..|+.++. .....++.+++.+
T Consensus 370 p~~spdg~~l~~~~~--~~~~~~l~~~~~~ 397 (417)
T TIGR02800 370 PSFAPNGRMILYATT--RGGRGVLGLVSTD 397 (417)
T ss_pred ceECCCCCEEEEEEe--CCCcEEEEEEECC
Confidence 4564 445665533 2334567777653
No 254
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=7e-07 Score=94.38 Aligned_cols=95 Identities=15% Similarity=0.005 Sum_probs=83.7
Q ss_pred CCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 255 GSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
+|.+.+. +.++.+-..|-+++.|+.+.+|+..+ ...++.++. .+..+.+++.+|||..|++|+ +.|++
T Consensus 100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-~~~~~~~~~--------~~~~~~sl~is~D~~~l~~as--~~ik~ 168 (541)
T KOG4547|consen 100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-KVIIRIWKE--------QKPLVSSLCISPDGKILLTAS--RQIKV 168 (541)
T ss_pred CCCCcceeeecccccCceEecCCceeEEEEeccc-ceeeeeecc--------CCCccceEEEcCCCCEEEecc--ceEEE
Confidence 5666666 77788899999999999999999988 788888887 677899999999999999998 59999
Q ss_pred EEccCCeeEEEeecccccceecccccCC
Q 005459 334 WSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 334 W~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
|++.+++.+.++.|| .+.|+++.|--+
T Consensus 169 ~~~~~kevv~~ftgh-~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 169 LDIETKEVVITFTGH-GSPVRTLSFTTL 195 (541)
T ss_pred EEccCceEEEEecCC-CcceEEEEEEEe
Confidence 999999999999999 677888888655
No 255
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.61 E-value=2.7e-05 Score=81.10 Aligned_cols=169 Identities=17% Similarity=0.172 Sum_probs=103.0
Q ss_pred EEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE--EE
Q 005459 260 VCASIAPEQQILAVGTR-----------RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV--GW 326 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las--g~ 326 (696)
+.+-|++.|++|.+--. ..++.++++.. ..++.... -.++|...+|+|+++.+++ |.
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e--~~i~V~~~--------~~~pVhdf~W~p~S~~F~vi~g~ 295 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE--RSIPVEKD--------LKDPVHDFTWEPLSSRFAVISGY 295 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc--cccceecc--------ccccceeeeecccCCceeEEecc
Confidence 33677777776554221 13445555542 22222222 5899999999999997765 45
Q ss_pred cCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEE-EecCCcceEEEE
Q 005459 327 KSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYA-IEEGSSERVLIF 399 (696)
Q Consensus 327 ~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~-~~~~~~~~v~~~ 399 (696)
.+-.+.++++.+. +...+.+. .=+.+.|+|.. +.++.+. .+.+|++.+..... .+.+.......+
T Consensus 296 ~pa~~s~~~lr~N-l~~~~Pe~---~rNT~~fsp~~----r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~w 367 (561)
T COG5354 296 MPASVSVFDLRGN-LRFYFPEQ---KRNTIFFSPHE----RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDW 367 (561)
T ss_pred cccceeecccccc-eEEecCCc---ccccccccCcc----cEEEEecCCccccceEEeccCCceEEEEEeecCCceEeec
Confidence 7889999999887 55555543 23456788876 5544322 77889887766555 555555556666
Q ss_pred ec-ceeeeec------cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 400 SF-GKCCLNR------GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 400 ~~-~~~~~s~------~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
++ +....+. ..|..+++|++....- + ....+.|.|.|++.-+.+.
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~-----------------------f-----el~~~~W~p~~~~~ttsSs 419 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKV-----------------------F-----ELTNITWDPSGQYVTTSSS 419 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEecCchh-----------------------h-----hhhhccccCCcccceeecc
Confidence 66 4433322 2366677777542211 1 3456778888888776665
Q ss_pred Cc
Q 005459 473 HG 474 (696)
Q Consensus 473 dG 474 (696)
++
T Consensus 420 ~~ 421 (561)
T COG5354 420 CP 421 (561)
T ss_pred CC
Confidence 43
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.58 E-value=8e-06 Score=89.01 Aligned_cols=130 Identities=14% Similarity=0.144 Sum_probs=67.0
Q ss_pred EEEEeCCcE--E-EEeeccCCceee--eeeecc--eecCCCCe-EEEEEcCCCcEEEEEec-CC----eEEEEEccCC--
Q 005459 224 FVLYSNGQL--M-SCSVSKKGLKLA--EFIKID--KELGSGDA-VCASIAPEQQILAVGTR-RG----VVELYDLAES-- 288 (696)
Q Consensus 224 ~~~s~dG~~--~-~~~~~d~~~~~~--~~~~~~--~~~~~~~~-v~v~~sp~~~~la~g~~-dg----~v~vw~~~~~-- 288 (696)
-.++|||+. + ++...++...+| +...++ .+...... ...+|||||+.||..+. +| .+..|+++..
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~ 269 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI 269 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence 458899874 2 233334444444 433332 22211222 23799999999987653 23 3344666541
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEc--cC-CeeEEEeecccccceecccccCCC
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSV--SG-CRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~--~~-~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+...+.... +.+.....+|||||+.|+..+ .+|...+|.+ .+ +.....+..+ ...+..+.|+||+
T Consensus 270 g~~~~lt~~--------~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~-~~~~~~p~wSPDG 338 (428)
T PRK01029 270 GKPRRLLNE--------AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKK-YRNSSCPAWSPDG 338 (428)
T ss_pred CcceEeecC--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccC-CCCccceeECCCC
Confidence 122222222 233456789999999888665 4666666654 21 1112223222 2234555666665
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=1.5e-05 Score=87.57 Aligned_cols=181 Identities=17% Similarity=0.166 Sum_probs=102.6
Q ss_pred CCCCeEE-EEEcCCCcEEEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEE-EEEcCC
Q 005459 255 GSGDAVC-ASIAPEQQILAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFA-VGWKSR 329 (696)
Q Consensus 255 ~~~~~v~-v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~la-sg~~Dg 329 (696)
.+...+. .+|||||+.||..+.+ ..|.+|++++ ++. +.+.. ..+.+...+|||||+.|+ +...++
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-g~~-~~l~~--------~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-GRR-EQITN--------FEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-CCE-EEccC--------CCCCcCCeEECCCCCEEEEEEccCC
Confidence 3444444 8999999999887644 3688889876 433 22332 344556789999999887 445555
Q ss_pred --cEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceEEEEe-cCCcceEEEEe
Q 005459 330 --GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRLYAIE-EGSSERVLIFS 400 (696)
Q Consensus 330 --~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l~~~~-~~~~~~v~~~~ 400 (696)
.|.+||+.++... .+..+ ......+.|+|++ +.++..+ .+..++..+++..... .+.......++
T Consensus 266 ~~~Iy~~d~~~~~~~-~lt~~-~~~~~~~~~spDg----~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S 339 (430)
T PRK00178 266 NPEIYVMDLASRQLS-RVTNH-PAIDTEPFWGKDG----RTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLS 339 (430)
T ss_pred CceEEEEECCCCCeE-EcccC-CCCcCCeEECCCC----CEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEEC
Confidence 4777898887643 34433 3345677899988 4443211 5666676666543322 22112224455
Q ss_pred c-ceeeeeccC-CCC--ceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC
Q 005459 401 F-GKCCLNRGV-SGM--TYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 401 ~-~~~~~s~~~-d~~--~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d 473 (696)
+ ++.++..+. ++. +.++++..++.+. + .+.......+|||||++++.++.+
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~---------------------l-t~~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGSVRI---------------------L-TDTSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCCEEE---------------------c-cCCCCCCCceECCCCCEEEEEEec
Confidence 5 555543332 221 2333333322211 0 111112245899999999887754
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=0.00014 Score=73.17 Aligned_cols=249 Identities=16% Similarity=0.242 Sum_probs=149.2
Q ss_pred CCCeEEEEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcE
Q 005459 256 SGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGL 331 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v 331 (696)
-..++.++|+|+++.|-++-. +|.|..|.++.....+..+..... ...+-..++.++||++|+++... |.|
T Consensus 39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-----~g~~p~yvsvd~~g~~vf~AnY~~g~v 113 (346)
T COG2706 39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-----PGSPPCYVSVDEDGRFVFVANYHSGSV 113 (346)
T ss_pred cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-----CCCCCeEEEECCCCCEEEEEEccCceE
Confidence 356677999999988887765 488999999863222222222110 11223889999999999988654 778
Q ss_pred EEEEccC-CeeEEEee--cccccc----------eecccccCCCCCCccceecce----eeEEEcCCCceEEEEe-----
Q 005459 332 TVWSVSG-CRLMSTIR--QISLSS----------ISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRLYAIE----- 389 (696)
Q Consensus 332 ~vW~~~~-~~~~~~l~--~~~~~~----------v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l~~~~----- 389 (696)
.+.-+.. +.+..... .| ... +....+.|++ +++++.. ++.+++.+.+.|-...
T Consensus 114 ~v~p~~~dG~l~~~v~~~~h-~g~~p~~rQ~~~h~H~a~~tP~~----~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~ 188 (346)
T COG2706 114 SVYPLQADGSLQPVVQVVKH-TGSGPHERQESPHVHSANFTPDG----RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK 188 (346)
T ss_pred EEEEcccCCccccceeeeec-CCCCCCccccCCccceeeeCCCC----CEEEEeecCCceEEEEEcccCccccccccccC
Confidence 8988743 43322211 11 111 5566778887 6766544 6777777766553322
Q ss_pred cCCcceEEEEec-ceeee-eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEE
Q 005459 390 EGSSERVLIFSF-GKCCL-NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFL 467 (696)
Q Consensus 390 ~~~~~~v~~~~~-~~~~~-s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~l 467 (696)
.+...+=+.|++ +|.+- ..-.++++.+|.......++ +....+..+|..|.+.+| .-.+.++|||++|
T Consensus 189 ~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~---------~~lQ~i~tlP~dF~g~~~-~aaIhis~dGrFL 258 (346)
T COG2706 189 PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKF---------EELQTIDTLPEDFTGTNW-AAAIHISPDGRFL 258 (346)
T ss_pred CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceE---------EEeeeeccCccccCCCCc-eeEEEECCCCCEE
Confidence 222334477777 66553 33456677776655432221 112233346888888776 5678999999999
Q ss_pred EEEeCCc-cE-EEEc--cCCceEecCCccceeeeEEEe--EeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 468 AVAGLHG-LI-LYDI--RQKKWRVFGDITQEQKIQSKG--LLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 468 a~ag~dG-~i-~w~~--~sg~w~~f~~~~~e~~~~v~~--~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
-+.-+.- .+ +|.+ .+++..+++....|.. .-++ +.-.+++|+++ .+ ++..|.+|.|+
T Consensus 259 YasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Liaa--~q--~sd~i~vf~~d 321 (346)
T COG2706 259 YASNRGHDSIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIAA--NQ--KSDNITVFERD 321 (346)
T ss_pred EEecCCCCeEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEEE--cc--CCCcEEEEEEc
Confidence 7665432 34 6655 4566555443322221 1233 34457889988 43 34569999997
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=2.3e-05 Score=82.59 Aligned_cols=284 Identities=15% Similarity=0.187 Sum_probs=159.6
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE-----EEcCC-----c
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV-----GWKSR-----G 330 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las-----g~~Dg-----~ 330 (696)
..++|++|+++|.+ .+..++|++... ...+.+... . .+.++.|||-|++|.+ -..|+ .
T Consensus 39 v~~~S~~G~lfA~~-~~~~v~i~~~~~-~~~~lt~~~---------~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn 106 (566)
T KOG2315|consen 39 VFAYSNNGRLFAYS-DNQVVKVFEIAT-LKVVLCVEL---------K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPN 106 (566)
T ss_pred eEEEcCCCcEEEEE-cCCeEEEEEccC-CcEEEEecc---------c-eeeeeeecccccccccccccccccCCCCCCCc
Confidence 38899999999985 467899999877 444444443 2 6899999999999875 22333 4
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceE--EEEecc---eee
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFG---KCC 405 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~---~~~ 405 (696)
+++|++.++.....+....+.. +++.|++|.. .-.-+.+..+.+++..+.+....- -|..++ +.++++ ..+
T Consensus 107 ~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~~k-l~~~~i~~f~lSpgp~~~~v 182 (566)
T KOG2315|consen 107 VLVYNVETGVQRSQIQKKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQHK-LSVSGITMLSLSPGPEPPFV 182 (566)
T ss_pred eeeeeeccceehhheehhhhcC-cccccccchh--hhhhhhcceEEEEecCCccceeee-eeccceeeEEecCCCCCceE
Confidence 6799999977666665532332 6888888851 111122336677776653322111 122233 444442 011
Q ss_pred e-----eccCCCCceeeeeeec------------------------CCeEEEEecCCCCcc--------eeEEeecC---
Q 005459 406 L-----NRGVSGMTYARQVIYG------------------------EDRLLVVQSEDTDEL--------KILHLNLP--- 445 (696)
Q Consensus 406 ~-----s~~~d~~~~~w~~~~~------------------------~~~~~~~~~~~~~~~--------~w~~~~~~--- 445 (696)
+ ..+.-..+++|.+... ...+++....|.+.. ..+.+.+-
T Consensus 183 AvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 183 AVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred EEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 1 2333344555543311 111222222221110 00111000
Q ss_pred -eeeecCCCceEEEEEcCCCCEEEEEeC--CccE-EEEccCCceEecCCccceeeeEEE-eEee--eCcEEEEEEeecCC
Q 005459 446 -VSYISQNWPVQHVAASKDGMFLAVAGL--HGLI-LYDIRQKKWRVFGDITQEQKIQSK-GLLW--LGKIIVVCNYIDSS 518 (696)
Q Consensus 446 -~~~~~~~~~I~~va~s~dG~~la~ag~--dG~i-~w~~~sg~w~~f~~~~~e~~~~v~-~~~w--~~~~lv~~~~~~~~ 518 (696)
..-+.-++||.++.|+|+|+-+|+.-. =-.+ +||.+..----|+ |. -+ .+-| ++++++.|++. +
T Consensus 263 ~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~----eg---pRN~~~fnp~g~ii~lAGFG--N 333 (566)
T KOG2315|consen 263 VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFP----EG---PRNTAFFNPHGNIILLAGFG--N 333 (566)
T ss_pred EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCC----CC---CccceEECCCCCEEEEeecC--C
Confidence 001123789999999999987766432 3455 8877654322222 11 22 3555 47888888764 4
Q ss_pred CeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc------CceEEEEEEE
Q 005459 519 NTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR------PFDVHIFHVK 571 (696)
Q Consensus 519 ~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~------d~~~~l~~~~ 571 (696)
-.+.+-||+..+. ..+.......+...-.+++|.+++++++ |+.++|||+.
T Consensus 334 L~G~mEvwDv~n~--K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 334 LPGDMEVWDVPNR--KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred CCCceEEEeccch--hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 5678999998621 1122223333445567799999999544 6889999985
No 260
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=0.00074 Score=68.17 Aligned_cols=251 Identities=11% Similarity=0.117 Sum_probs=135.8
Q ss_pred EEEEEc---cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec---CcEEEEEEEEecCcccccC
Q 005459 33 LLLIAS---PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS---SLYLHIFKVQITEKSIQIG 106 (696)
Q Consensus 33 lla~~~---~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~---dg~l~l~~l~~~~~~~~~~ 106 (696)
++.+-+ +..|++|++..+...+... +-+.+.+..+-++|+|+.+.|-++-. +|.+--|.++.....+..
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g~l~~~----~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~- 80 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTGELSLL----QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF- 80 (346)
T ss_pred EEeeecccCCCceEEEEEeCcccccchh----hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-
Confidence 444445 5679999987332222211 22345577788999999998888654 477888888754222211
Q ss_pred CCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecC-CcEEEEecCCccccceeeccCCCCCccccccccc
Q 005459 107 GKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSD-GSLYSISWKGEFYGAFELVHSSNDSSVAALSHHF 185 (696)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~-g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s 185 (696)
-.+..+.+....-.++..++..++++... |.|.++....+ +.... .+..+.+
T Consensus 81 ----------------ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~d--G~l~~--------~v~~~~h- 133 (346)
T COG2706 81 ----------------LNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQAD--GSLQP--------VVQVVKH- 133 (346)
T ss_pred ----------------eeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccC--Ccccc--------ceeeeec-
Confidence 11111222221223556667777777665 56665544322 11100 0000000
Q ss_pred CCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEee-ccCCceeeeeeeccee-------cCCC
Q 005459 186 PSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE-------LGSG 257 (696)
Q Consensus 186 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~-------~~~~ 257 (696)
.+.....+. ...-..++.++|||+++++.. ....+.+++...++.. ..-.
T Consensus 134 -------------------~g~~p~~rQ---~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 134 -------------------TGSGPHERQ---ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred -------------------CCCCCCccc---cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 000000000 000012355889998877654 2233556665544221 1113
Q ss_pred CeEEEEEcCCCcEEEEEec-CCeEEEEEccCCCceeeEEeecc-CCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEEEE
Q 005459 258 DAVCASIAPEQQILAVGTR-RGVVELYDLAESASLIRTVSLYD-WGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLTVW 334 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~-dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~vW 334 (696)
++-.++|+|++++.-+-++ +++|.+|..+.....+..++... +|....-......|..+|||++|.++-+ ...|.++
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 4445999999998877665 89999999987433333333211 1211123456788999999999988754 2367777
Q ss_pred Ecc
Q 005459 335 SVS 337 (696)
Q Consensus 335 ~~~ 337 (696)
.+.
T Consensus 272 ~V~ 274 (346)
T COG2706 272 SVD 274 (346)
T ss_pred EEc
Confidence 764
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=0.0001 Score=79.58 Aligned_cols=221 Identities=13% Similarity=0.112 Sum_probs=133.3
Q ss_pred HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCC-CCCCCceeeeeeEEEeeeccccccceeEEEeeeCC
Q 005459 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGG-KQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDN 142 (696)
Q Consensus 64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~ 142 (696)
+..++...+++|...+.+||+++.||.|++-++.+........+ ..+. .+.....++++.++|..+..+.
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------nLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------NLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------ccchhhhhccCcceEEEEEecc
Confidence 34566777999999999999999999999999986553221111 0111 2233445677888887776654
Q ss_pred C--eEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc
Q 005459 143 K--HMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 143 ~--~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
. .+-....+|.|.+|-.-...-... .....+++.|.+|.|..+.
T Consensus 82 ~~QKLTtSDt~GlIiVWmlykgsW~EE----------------------------------MiNnRnKSvV~SmsWn~dG 127 (1189)
T KOG2041|consen 82 NNQKLTTSDTSGLIIVWMLYKGSWCEE----------------------------------MINNRNKSVVVSMSWNLDG 127 (1189)
T ss_pred ccccccccCCCceEEEEeeecccHHHH----------------------------------HhhCcCccEEEEEEEcCCC
Confidence 3 333344456665542111100000 1122456779999999888
Q ss_pred ceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCce---e-eEEe
Q 005459 221 RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASL---I-RTVS 296 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~---~-~~~~ 296 (696)
...+.+..||.+++- +-|| -++|.-. +.+ .....+.|++|.+.+..+-.+|.+.+||...+-.. + ....
T Consensus 128 ~kIcIvYeDGavIVG-svdG-NRIwgKe----Lkg-~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn 200 (1189)
T KOG2041|consen 128 TKICIVYEDGAVIVG-SVDG-NRIWGKE----LKG-QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVN 200 (1189)
T ss_pred cEEEEEEccCCEEEE-eecc-ceecchh----cch-heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEe
Confidence 888888899987663 3333 3556532 222 12234889999999999999999999997642110 0 0011
Q ss_pred eccCCCCCCCCCCeEEEEEC--------CCCCeEEEEEcCCcEEEEEc
Q 005459 297 LYDWGYSMDDTGPVSCIAWT--------PDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~s--------pdg~~lasg~~Dg~v~vW~~ 336 (696)
+.. ......-.+..+.|. ||--+||++..+|.+.+-.-
T Consensus 201 ~tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 201 GTG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred eee--eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 100 000111225555553 57789999999988776643
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=3.6e-07 Score=62.88 Aligned_cols=38 Identities=29% Similarity=0.619 Sum_probs=35.2
Q ss_pred ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 290 SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 290 ~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
++++++++ |+++|++|+|+|+++.|++|+.|+.|++||
T Consensus 2 ~~~~~~~~--------h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRG--------HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEES--------SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcC--------CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677888 999999999999999999999999999997
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00073 Score=70.56 Aligned_cols=277 Identities=13% Similarity=0.067 Sum_probs=150.8
Q ss_pred CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec----------CcEEEEEEEEecCcccccCCCC
Q 005459 40 CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS----------SLYLHIFKVQITEKSIQIGGKQ 109 (696)
Q Consensus 40 ~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~----------dg~l~l~~l~~~~~~~~~~~~~ 109 (696)
++|.+-|.. ....++.+.- .+.+.. + +||||+.|.++.+ +..|.+||+++.+....+....
T Consensus 27 ~~v~ViD~~-~~~v~g~i~~------G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGE-AGRVLGMTDG------GFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECC-CCEEEEEEEc------cCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 789999986 5555554431 112222 3 9999999999877 6889999998765321111001
Q ss_pred CCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEe-c-CCcEEEEecCCccccceeeccCCCCCcccccccccCC
Q 005459 110 PSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGL-S-DGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPS 187 (696)
Q Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t-~-~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~ 187 (696)
.+ +. ..+.......+++|++.+++.. + +..+.+++....... ..++. ++
T Consensus 98 ~p-----------~~---~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv--------------~ei~v-p~ 148 (352)
T TIGR02658 98 GP-----------RF---LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFV--------------RMMDV-PD 148 (352)
T ss_pred Cc-----------hh---hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEE--------------EEEeC-CC
Confidence 00 00 0111223457788899888875 3 566666654432211 11111 11
Q ss_pred CCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeec-cCCceeeeeeecceecCCCCeEE--EEE
Q 005459 188 NGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVC--ASI 264 (696)
Q Consensus 188 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~v~--v~~ 264 (696)
+. ..|...-..+.....||+.+..+.. ++....-+ .+...+-.+.+. -.|
T Consensus 149 ~~------------------------~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~---~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 149 CY------------------------HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKP---TEVFHPEDEYLINHPAY 201 (352)
T ss_pred Cc------------------------EEEEecCCccEEEeecCceEEEEecCCCceEEee---eeeecCCccccccCCce
Confidence 10 0111112223345577776665443 22221111 000001011111 144
Q ss_pred cC-CCcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE----------cCC
Q 005459 265 AP-EQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW----------KSR 329 (696)
Q Consensus 265 sp-~~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~----------~Dg 329 (696)
++ +++++-+..+ |+|.+-|+.... ..+..+........ -..+...-++++|||+.+.+.. ..+
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~-wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~ 279 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADG-WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASR 279 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccc-cCCCcceeEEEcCCCCEEEEEecCCccccccCCCC
Confidence 56 8888877776 999999965421 11222211000000 1345556699999999998853 124
Q ss_pred cEEEEEccCCeeEEEeecccccceecccccCCCCCCcc-cee--cce--eeEEEcCCCceEEEEe
Q 005459 330 GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYE-PLM--SGT--SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 330 ~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~-~l~--sg~--~~~~W~~~~~~l~~~~ 389 (696)
.|.++|+.+++.+..+.-. ..+..++++||+ + .+. .+. .+.+.|..+++.+...
T Consensus 280 ~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dg----kp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 280 FLFVVDAKTGKRLRKIELG--HEIDSINVSQDA----KPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEECCCCeEEEEEeCC--CceeeEEECCCC----CeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 7999999999999888753 357889999998 5 222 211 4666777777666654
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=1.5e-05 Score=87.58 Aligned_cols=148 Identities=8% Similarity=0.108 Sum_probs=85.4
Q ss_pred EEEEEeCCcEEEEeec-cCC--ceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEE-EecCCe--EEEEEccCCCceee
Q 005459 223 LFVLYSNGQLMSCSVS-KKG--LKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAV-GTRRGV--VELYDLAESASLIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~-d~~--~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~-g~~dg~--v~vw~~~~~~~~~~ 293 (696)
...++|||+.++..+. ++. +.+++...++. +....... ..+|+|||+.||. ...+|. |.++|+++ ++ ..
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t-g~-~~ 299 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT-KA-LT 299 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC-CC-eE
Confidence 3568899987776653 333 45566554432 21112222 3799999998875 566775 55666654 33 33
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCc--EEEEEccCCeeEEEeecccccceecccccCCCCCCcccee
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRG--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~ 370 (696)
.+.. +.+.....+|||||+.|+..+. ++. |.++|+.+++.. .+... ......++|+|++ +.++
T Consensus 300 ~lt~--------~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~-g~~~~~~~~SpDG----~~l~ 365 (448)
T PRK04792 300 RITR--------HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFE-GEQNLGGSITPDG----RSMI 365 (448)
T ss_pred ECcc--------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecC-CCCCcCeeECCCC----CEEE
Confidence 3443 4555678899999998876654 344 555577666532 23211 1123457889998 4443
Q ss_pred cce------eeEEEcCCCceEE
Q 005459 371 SGT------SMMQWDEYGYRLY 386 (696)
Q Consensus 371 sg~------~~~~W~~~~~~l~ 386 (696)
... .+..+++++++..
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ 387 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE
Confidence 211 3445566665543
No 265
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=0.00044 Score=71.63 Aligned_cols=125 Identities=12% Similarity=0.220 Sum_probs=81.8
Q ss_pred EeCCcEEEEeeccC-Cceeeeeeecce--e-cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 227 YSNGQLMSCSVSKK-GLKLAEFIKIDK--E-LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 227 s~dG~~~~~~~~d~-~~~~~~~~~~~~--~-~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
..|+...+.+..|+ .+-+.+...++. . .+....-.+..+|+|+.++++-....+-+.|+++ +. .+.+...
T Consensus 368 ~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn-v~~idkS---- 441 (668)
T COG4946 368 QVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN-VRLIDKS---- 441 (668)
T ss_pred ccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC-eeEeccc----
Confidence 33444444444444 334455444431 1 2223333499999999999999999999999987 43 3333331
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcC----CcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKS----RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~D----g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.-+-|+...|+|+++.+|-+.-+ ..|+++|+.+++....-... +.=.+++|+|++
T Consensus 442 ---~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~t--a~DfsPaFD~d~ 500 (668)
T COG4946 442 ---EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPT--AYDFSPAFDPDG 500 (668)
T ss_pred ---ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCc--ccccCcccCCCC
Confidence 45779999999999999976554 47999999998765433221 123567888877
No 266
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=7.7e-06 Score=82.45 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=88.2
Q ss_pred EEEeC--CcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeE-Ee
Q 005459 225 VLYSN--GQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRT-VS 296 (696)
Q Consensus 225 ~~s~d--G~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~ 296 (696)
.|.+. .+.++++..-+.++++|.....+- ..-+.++. +..-|++++|.+|..-|.+..||.+. +.+... ++
T Consensus 209 ~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~-~kl~g~~~k 287 (412)
T KOG3881|consen 209 RFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG-GKLLGCGLK 287 (412)
T ss_pred eecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccC-ceeeccccC
Confidence 35555 677888888888999997754321 22345555 89999999999999999999999998 555544 66
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM 342 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~ 342 (696)
+ -+|.|++|...|.+.+||+++-|+.|||+|+.+.+++
T Consensus 288 g--------~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 288 G--------ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred C--------ccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 6 7999999999999999999999999999999997665
No 267
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.41 E-value=2.6e-05 Score=77.51 Aligned_cols=224 Identities=13% Similarity=0.130 Sum_probs=149.8
Q ss_pred EEeCCcEEEEeeccCCceeeeee-ecceecC--C---CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc---eeeEEe
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFI-KIDKELG--S---GDAVCASIAPEQQILAVGTRRGVVELYDLAESAS---LIRTVS 296 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~-~~~~~~~--~---~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~---~~~~~~ 296 (696)
.-|-..-+++.+.|.++++|--. .++.|+. | ....+++++++.+.|.+|-.+|++.-+.+...-+ ..+...
T Consensus 32 l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~ 111 (404)
T KOG1409|consen 32 LIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYL 111 (404)
T ss_pred eccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhh
Confidence 34555557777889999998654 3444421 2 3444589999999999999999999988765222 122223
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecc----
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---- 372 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg---- 372 (696)
. |.++|..+-|+-.-+.+++.+.|..+.---.+.+.-+ .++ ...+.+-.++-+ .....-|
T Consensus 112 ~--------h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~l---g~Y---~~~~~~t~~~~d--~~~~fvGd~~g 175 (404)
T KOG1409|consen 112 A--------HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRL---GGY---NFETPASALQFD--ALYAFVGDHSG 175 (404)
T ss_pred h--------hhcceeeEEecCCceeEEEeccccceEEEeeccCCcc---cce---EeeccCCCCcee--eEEEEeccccc
Confidence 3 9999999999999999999999987743323332211 111 011111101000 0000111
Q ss_pred -eeeEEEcCCCceEEEEecCCcceEEEEec---ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeee
Q 005459 373 -TSMMQWDEYGYRLYAIEEGSSERVLIFSF---GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSY 448 (696)
Q Consensus 373 -~~~~~W~~~~~~l~~~~~~~~~~v~~~~~---~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 448 (696)
++..--...+-.++....+|.+.+..+.. .+.+.++..|..+.+|++.-.... ....
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-------------------~~el 236 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-------------------AYEL 236 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-------------------eeee
Confidence 13444455666788888899999866665 567889999999999998655442 2344
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc
Q 005459 449 ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK 484 (696)
Q Consensus 449 ~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~ 484 (696)
.+|+..|+.+..-+--+.+.+++.||.+ +|+++..+
T Consensus 237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred ccchhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 5788899999888889999999999999 99997664
No 268
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=2.3e-05 Score=86.02 Aligned_cols=149 Identities=12% Similarity=0.076 Sum_probs=88.1
Q ss_pred EEEEEeCCcEEEEeecc-C--Cceeeeeeecce--ecCCCCeE-EEEEcCCCcEEEEE-ecCC--eEEEEEccCCCceee
Q 005459 223 LFVLYSNGQLMSCSVSK-K--GLKLAEFIKIDK--ELGSGDAV-CASIAPEQQILAVG-TRRG--VVELYDLAESASLIR 293 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~~d-~--~~~~~~~~~~~~--~~~~~~~v-~v~~sp~~~~la~g-~~dg--~v~vw~~~~~~~~~~ 293 (696)
...++|||+.++..+.+ + .+.+++...++. +....... ..+|||||+.||.. ..+| .|.+||+++ +. ..
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~-~~-~~ 280 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS-RQ-LS 280 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC-CC-eE
Confidence 35688999887766533 2 345566654432 22222223 38999999988854 4455 577778775 33 33
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CC--cEEEEEccCCeeEEEeecccccceecccccCCCCCCcccee
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SR--GLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLM 370 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~ 370 (696)
.+.. +.+......|+|||+.|+..+. ++ .|.++++.++... .+... ......+.|+|++ +.++
T Consensus 281 ~lt~--------~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~-~~~~~~~~~Spdg----~~i~ 346 (430)
T PRK00178 281 RVTN--------HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV-GNYNARPRLSADG----KTLV 346 (430)
T ss_pred Eccc--------CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC-CCCccceEECCCC----CEEE
Confidence 3443 4555677899999998876654 33 4666777666532 22211 1223456788987 4443
Q ss_pred cce------eeEEEcCCCceEEE
Q 005459 371 SGT------SMMQWDEYGYRLYA 387 (696)
Q Consensus 371 sg~------~~~~W~~~~~~l~~ 387 (696)
-.. .+..|++.+++...
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred EEEccCCceEEEEEECCCCCEEE
Confidence 211 45667777665433
No 269
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=0.00034 Score=73.77 Aligned_cols=303 Identities=17% Similarity=0.243 Sum_probs=169.8
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEec-----------CCeEEEEEccCCCc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTR-----------RGVVELYDLAESAS 290 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~-----------dg~v~vw~~~~~~~ 290 (696)
+.+||-|.++++ .....+.+|.+..-.+. ..|.+.-.+.|||..++|++=+. ...++|||+.+ +.
T Consensus 216 v~wSP~GTYL~t-~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-G~ 293 (698)
T KOG2314|consen 216 VRWSPKGTYLVT-FHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-GL 293 (698)
T ss_pred EEecCCceEEEE-EeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-cc
Confidence 457888887765 34445778887654433 35666666999999999998652 25799999998 77
Q ss_pred eeeEEeeccCCCCCCCCCCe-EEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 291 LIRTVSLYDWGYSMDDTGPV-SCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V-~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
..+.+...+ ..-.+ .-..||.|++++|--.. .+|.|++...-.++- .+.-.-+.|....|+|.+ ..+
T Consensus 294 lkrsF~~~~------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld-~Kslki~gIr~FswsP~~----~ll 361 (698)
T KOG2314|consen 294 LKRSFPVIK------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLD-KKSLKISGIRDFSWSPTS----NLL 361 (698)
T ss_pred hhcceeccC------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeec-ccccCCccccCcccCCCc----ceE
Confidence 777776521 11122 34689999999998777 689999887643321 111112345556667765 333
Q ss_pred ecceeeEEEcCCCceEEEEecCCcceE--EEEecceeeeeccC----CCCceeeeeeecCCeEEEEecCCCCc-------
Q 005459 370 MSGTSMMQWDEYGYRLYAIEEGSSERV--LIFSFGKCCLNRGV----SGMTYARQVIYGEDRLLVVQSEDTDE------- 436 (696)
Q Consensus 370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v--~~~~~~~~~~s~~~----d~~~~~w~~~~~~~~~~~~~~~~~~~------- 436 (696)
..|.+++... ..++ ..+.-.+.+-+.+. |.. ..|. ...+.+.++.......
T Consensus 362 ------AYwtpe~~~~-------parvtL~evPs~~~iRt~nlfnVsDck-LhWQ--k~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 362 ------AYWTPETNNI-------PARVTLMEVPSKREIRTKNLFNVSDCK-LHWQ--KSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred ------EEEcccccCC-------cceEEEEecCccceeeeccceeeeccE-EEec--cCCcEEEEEEEeeccccccceEe
Confidence 3676655322 1112 11111222211110 000 0121 1222232222111100
Q ss_pred ----ceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCC---ccE-EEEcc--CCceEecCCccceeeeEEEeEeee-
Q 005459 437 ----LKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLH---GLI-LYDIR--QKKWRVFGDITQEQKIQSKGLLWL- 505 (696)
Q Consensus 437 ----~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~d---G~i-~w~~~--sg~w~~f~~~~~e~~~~v~~~~w~- 505 (696)
.......+|-.-..-..+|-..+|-|.|..+|+-+.. .++ .|.++ .++|++..... ...+..+-|.
T Consensus 426 n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfwsP 502 (698)
T KOG2314|consen 426 NLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWSP 502 (698)
T ss_pred eEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEcC
Confidence 0112223555555556788999999999887765432 466 88876 44565533211 1235677886
Q ss_pred -CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEc
Q 005459 506 -GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYR 561 (696)
Q Consensus 506 -~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~ 561 (696)
+.++|+++.. +..+.+.||+.+.-+...+.+.+-....-+--+|.|.|+++.++
T Consensus 503 kG~fvvva~l~--s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 503 KGRFVVVAALV--SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred CCcEEEEEEec--ccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 6778887554 46688999988611111122222122224777899999998543
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.39 E-value=0.00056 Score=70.84 Aligned_cols=98 Identities=19% Similarity=0.267 Sum_probs=74.1
Q ss_pred cCCCCeEE-EEEcCCCcEEEEEecCC-eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 254 LGSGDAVC-ASIAPEQQILAVGTRRG-VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 254 ~~~~~~v~-v~~sp~~~~la~g~~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
.+|...|. ..+.-+.+-++.|..|| .+-|||.+. ...+.+.. .-|.|.+|+.+|||+.++++-....+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--~e~kr~e~--------~lg~I~av~vs~dGK~~vvaNdr~el 425 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--GEVKRIEK--------DLGNIEAVKVSPDGKKVVVANDRFEL 425 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--ceEEEeeC--------CccceEEEEEcCCCcEEEEEcCceEE
Confidence 45666677 88888888999999999 999999885 44455555 57889999999999999999988899
Q ss_pred EEEEccCCeeEEEeecccccceecccccCCC
Q 005459 332 TVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.+.|+.++... .+......-|+...++|++
T Consensus 426 ~vididngnv~-~idkS~~~lItdf~~~~ns 455 (668)
T COG4946 426 WVIDIDNGNVR-LIDKSEYGLITDFDWHPNS 455 (668)
T ss_pred EEEEecCCCee-EecccccceeEEEEEcCCc
Confidence 99999887532 2222213345666666665
No 271
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.33 E-value=0.00023 Score=69.74 Aligned_cols=231 Identities=15% Similarity=0.171 Sum_probs=116.0
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeee------ccee--cC-CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeE
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIK------IDKE--LG-SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~------~~~~--~~-~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~ 294 (696)
++.++||++++.. +|..+.+-...+ +++. .+ +-..-.++||||+.+||.+...|+|++||+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 3467889888753 343343332211 1111 11 12233499999999999999999999999873 44444
Q ss_pred EeeccCCCCCCCCCCeEEEEECCC------CCeEEEEEcCCcEEEEEccC-----CeeEEEee--cccccceecccccCC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPD------NSAFAVGWKSRGLTVWSVSG-----CRLMSTIR--QISLSSISSPIVKPN 361 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spd------g~~lasg~~Dg~v~vW~~~~-----~~~~~~l~--~~~~~~v~~~~~sp~ 361 (696)
+....- ....-..+|..|.|-+- ..-|.+-..+|.++=+-+.. .+..+++. .|....|+++
T Consensus 80 I~p~~~-~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~----- 153 (282)
T PF15492_consen 80 IPPAMS-FPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSA----- 153 (282)
T ss_pred cCcccc-cCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEE-----
Confidence 544210 11123456777777542 22445555557777666532 22222222 1222334444
Q ss_pred CCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCc--c--
Q 005459 362 QDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDE--L-- 437 (696)
Q Consensus 362 ~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~--~-- 437 (696)
+|+++.. |+.+...+... + -.+...+.-+..|-++.+..-.......+... .
T Consensus 154 ---------------vy~p~h~-LLlVgG~~~~~-------~-~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~ 209 (282)
T PF15492_consen 154 ---------------VYHPKHR-LLLVGGCEQNQ-------D-GMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSK 209 (282)
T ss_pred ---------------EEcCCCC-EEEEeccCCCC-------C-ccccccccCceEEEEcCCCCcEEEccccCcccccccc
Confidence 4444332 22221111100 0 00111122233455554443322222111110 0
Q ss_pred eeEEeecCe--ee---ecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC----CceEe
Q 005459 438 KILHLNLPV--SY---ISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ----KKWRV 487 (696)
Q Consensus 438 ~w~~~~~~~--~~---~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s----g~w~~ 487 (696)
.+...+++. -| .....-|..+.+||||+.||+..-+|.+ +|++-+ ++|+.
T Consensus 210 ~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 210 RRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 011111121 11 1224569999999999999999999999 999965 45654
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.33 E-value=9.3e-05 Score=73.64 Aligned_cols=240 Identities=15% Similarity=0.246 Sum_probs=135.8
Q ss_pred cccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~ 148 (696)
.+.++..-|-..-+...+.|.++|+|-=.-.... -+++ ...++ ...++......-.+|+++
T Consensus 26 ~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~------------wpsI----~~~mP---~~~~~~~y~~e~~~L~vg 86 (404)
T KOG1409|consen 26 DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQY------------WPSI----YHYMP---SPCSAMEYVSESRRLYVG 86 (404)
T ss_pred hhhhheeccCCCCeEEccccceeeeEEecccccc------------Cchh----hhhCC---CCceEeeeeccceEEEEE
Confidence 4556666777778889999999999954322111 0111 00000 011222333345678999
Q ss_pred ecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEe
Q 005459 149 LSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYS 228 (696)
Q Consensus 149 t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~ 228 (696)
-.+|.+..++.....+....+ .....+...+..+- |+-
T Consensus 87 ~~ngtvtefs~sedfnkm~~~--------------------------------r~~~~h~~~v~~~i----------f~~ 124 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDFNKMTFL--------------------------------KDYLAHQARVSAIV----------FSL 124 (404)
T ss_pred EecceEEEEEhhhhhhhcchh--------------------------------hhhhhhhcceeeEE----------ecC
Confidence 999999887766554432211 01122333343333 333
Q ss_pred CCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCC--cEEEEEecCCeEEEEEccCC-CceeeEEeeccCCCCCC
Q 005459 229 NGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQ--QILAVGTRRGVVELYDLAES-ASLIRTVSLYDWGYSMD 305 (696)
Q Consensus 229 dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~--~~la~g~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~ 305 (696)
.-..+++++.|+.+ .|......+..||-.-.+.+..++. .+.-+|-..|.|.+-.+... ..++.++.+
T Consensus 125 ~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~-------- 195 (404)
T KOG1409|consen 125 THEWVLSTGKDKQF-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNG-------- 195 (404)
T ss_pred CceeEEEeccccce-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcC--------
Confidence 33444444444433 2433222121232222221111111 14445666677766665432 356777777
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee-EEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL-MSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~-~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
|.+++.+++|.|....|++|..|..+.+||+.+++- .+.+.+| .+.|..+..-+.- ..+.+.. .+++|+..
T Consensus 196 h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh-~~kV~~l~~~~~t----~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 196 HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGH-NDKVQALSYAQHT----RQLISCGEDGGIVVWNMN 270 (404)
T ss_pred cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccc-hhhhhhhhhhhhh----eeeeeccCCCeEEEEecc
Confidence 999999999999999999999999999999988764 4455566 6667766554433 3333332 78889876
Q ss_pred Cc
Q 005459 382 GY 383 (696)
Q Consensus 382 ~~ 383 (696)
..
T Consensus 271 ~~ 272 (404)
T KOG1409|consen 271 VK 272 (404)
T ss_pred ce
Confidence 54
No 273
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.32 E-value=6.2e-05 Score=72.40 Aligned_cols=199 Identities=11% Similarity=0.035 Sum_probs=118.1
Q ss_pred cEEEEcCCC-----cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeE
Q 005459 71 LQAVWSPDT-----KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHM 145 (696)
Q Consensus 71 ~~v~wsPDg-----~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~l 145 (696)
..+.|.|-+ -+||.+++.|.+.+|...+.....+... +...++++ +.-.+-....+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd-----~snn~v~~--------------~~r~cd~~~~~ 131 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD-----VSNNDVTL--------------VKRYCDLKFPL 131 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-----ccccchhh--------------hhhhcccccce
Confidence 345666643 3789999999999999876543222100 00011100 11111224567
Q ss_pred EEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCc-ceEE
Q 005459 146 LLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPM-RLLF 224 (696)
Q Consensus 146 lv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~ 224 (696)
.+++.|.+++.+..++...+.. .|.+.+ ...+
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~-----------------------------------------------~h~~~~~~ns~ 164 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFA-----------------------------------------------VHNQNLTQNSL 164 (344)
T ss_pred eeccCCcceeEEEEecCcccce-----------------------------------------------eeccccceeee
Confidence 8888888888776665443311 011111 1224
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeec-cee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKI-DKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~-~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
.+++|++..++.+....+-.+.+... +.+ .......|.+||.....+|++.+||++.|||++..+.+..+...
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 56777777776665555544443321 111 22345677999999999999999999999999974444443333
Q ss_pred ccCCCCCCCCCCeEEEEECCCCC---eEEEEEcCCcEEEEEccCCe
Q 005459 298 YDWGYSMDDTGPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 298 ~~~~~~~~h~g~V~~l~~spdg~---~lasg~~Dg~v~vW~~~~~~ 340 (696)
. .+.|.|+++.+.|||-|- ++.+-.. +-+.|-|+.+++
T Consensus 245 t----rp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~ 285 (344)
T KOG4532|consen 245 T----RPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYV 285 (344)
T ss_pred c----CCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCc
Confidence 1 123999999999998554 3344333 567777776654
No 274
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.30 E-value=1.7e-06 Score=93.24 Aligned_cols=198 Identities=11% Similarity=0.042 Sum_probs=133.5
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEEEEEcCCCcEEEEEecCCeE
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVCASIAPEQQILAVGTRRGVV 280 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~v~~sp~~~~la~g~~dg~v 280 (696)
++...|++|.|.+.- -.++++++-|..+..||...+..- .-|..+..|.||....-+...+....|
T Consensus 112 ghsraitd~n~~~q~---------pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQH---------PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred cCccceeccccCCCC---------CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 556678887765532 235667777888889998776432 235667779999865545455667789
Q ss_pred EEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceeccccc
Q 005459 281 ELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVK 359 (696)
Q Consensus 281 ~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~s 359 (696)
++||.+.+..++..+++ |...|+.++|.. --..+.+.+.||+|+.||.........-..-....+.-..+-
T Consensus 183 ~vwd~r~gs~pl~s~K~--------~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKG--------HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYL 254 (1081)
T ss_pred EEEeccCCCcceEEecc--------cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccc
Confidence 99999987788888888 999999999976 344678899999999999854322111111113445666667
Q ss_pred CCCCCCccceecce----------eeEEEcCC-CceEEEEecCCcceEEEEec-------------ceeeeeccCCCCce
Q 005459 360 PNQDCKYEPLMSGT----------SMMQWDEY-GYRLYAIEEGSSERVLIFSF-------------GKCCLNRGVSGMTY 415 (696)
Q Consensus 360 p~~~~~~~~l~sg~----------~~~~W~~~-~~~l~~~~~~~~~~v~~~~~-------------~~~~~s~~~d~~~~ 415 (696)
|-++.-.-+..-|. ....|+.. ..+.+..+.||++.|..|-. .-.++|-+.|.+++
T Consensus 255 Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lr 334 (1081)
T KOG0309|consen 255 PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLR 334 (1081)
T ss_pred ccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceE
Confidence 76642221112222 33446553 45678889999999865554 12589999999999
Q ss_pred eeeee
Q 005459 416 ARQVI 420 (696)
Q Consensus 416 ~w~~~ 420 (696)
+|.+.
T Consensus 335 lWpI~ 339 (1081)
T KOG0309|consen 335 LWPID 339 (1081)
T ss_pred eeecc
Confidence 99875
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=0.00037 Score=73.52 Aligned_cols=306 Identities=13% Similarity=0.117 Sum_probs=152.2
Q ss_pred CceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEec-----------Cc
Q 005459 21 SQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTS-----------SL 89 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~-----------dg 89 (696)
.+-.+.+||-|.+|++.....|.+|-.. .+.|..+- -|-.+..+.|||.-++|++=+. ..
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~GI~lWGG~-------~f~r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~ 282 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQGIALWGGE-------SFDRIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQ 282 (698)
T ss_pred eeeeEEecCCceEEEEEeccceeeecCc-------cHHHHHhc--cCCCceeeecCCccceEEEecCCccccCcccCCCc
Confidence 3556899999999999999999999763 23332221 1344677999999999999542 14
Q ss_pred EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee
Q 005459 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (696)
Q Consensus 90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~ 169 (696)
.++|||+.++........... ....| ++.-.+.|+++++--+.+ .|.++.-. .-.- +
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~-~~~~W-----------------P~frWS~DdKy~Arm~~~-sisIyEtp--sf~l--l 339 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKS-PYLKW-----------------PIFRWSHDDKYFARMTGN-SISIYETP--SFML--L 339 (698)
T ss_pred eEEEEEccccchhcceeccCC-Ccccc-----------------ceEEeccCCceeEEeccc-eEEEEecC--ceee--e
Confidence 689999998875432221111 11111 122233344444433332 23332111 1000 0
Q ss_pred ccCCCCCcccccccccCCCCc-cccc-CCCc-cccCCc--CCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-
Q 005459 170 VHSSNDSSVAALSHHFPSNGL-ASVD-TSGA-FVSDHK--FPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK- 243 (696)
Q Consensus 170 ~~~p~~~~~~~~~~~s~~~~l-~~~~-~~~~-~~~~~~--~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~- 243 (696)
+.++.....++...+++..++ +... ...+ ..+..+ .+....|+......-.+.-+-+-..|.++..-....+-.
T Consensus 340 d~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred cccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 112222223333333443331 1111 1000 000000 112222222111111122344556676665544322111
Q ss_pred ----eeeeeec----ce----ecCCCCeEE-EEEcCCCcEEEEEec---CCeEEEEEccCCCc---eeeEEeeccCCCCC
Q 005459 244 ----LAEFIKI----DK----ELGSGDAVC-ASIAPEQQILAVGTR---RGVVELYDLAESAS---LIRTVSLYDWGYSM 304 (696)
Q Consensus 244 ----~~~~~~~----~~----~~~~~~~v~-v~~sp~~~~la~g~~---dg~v~vw~~~~~~~---~~~~~~~~~~~~~~ 304 (696)
..+..-. +. ...-.+.+- .+|-|.|+.+|+-+. ..++.+|.+.+... ++..+.
T Consensus 420 ~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d-------- 491 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD-------- 491 (698)
T ss_pred ccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--------
Confidence 1111100 00 012234444 899999998887654 36899999884222 222222
Q ss_pred CCCCCeEEEEECCCCCeEEEE---EcCCcEEEEEccCCeeEEE-eecccccceecccccCCCCCCccceeccee
Q 005459 305 DDTGPVSCIAWTPDNSAFAVG---WKSRGLTVWSVSGCRLMST-IRQISLSSISSPIVKPNQDCKYEPLMSGTS 374 (696)
Q Consensus 305 ~h~g~V~~l~~spdg~~lasg---~~Dg~v~vW~~~~~~~~~~-l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~ 374 (696)
....+.+.|||.|+.++++ +..|.+..+|+.-..+..+ ...| ...+.+.|+|.| ++++++++
T Consensus 492 --k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh--~~at~veWDPtG----RYvvT~ss 557 (698)
T KOG2314|consen 492 --KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH--FAATEVEWDPTG----RYVVTSSS 557 (698)
T ss_pred --ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc--cccccceECCCC----CEEEEeee
Confidence 2446889999999998876 4467888888764221111 1112 234556677777 66665553
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00014 Score=78.99 Aligned_cols=104 Identities=9% Similarity=0.028 Sum_probs=59.1
Q ss_pred EEEeCCcEEEEeec-cCCce--eeeeeecce--ecCCCCeEEEEEcCCCcEEEEEecC---------CeEEEEEccCCCc
Q 005459 225 VLYSNGQLMSCSVS-KKGLK--LAEFIKIDK--ELGSGDAVCASIAPEQQILAVGTRR---------GVVELYDLAESAS 290 (696)
Q Consensus 225 ~~s~dG~~~~~~~~-d~~~~--~~~~~~~~~--~~~~~~~v~v~~sp~~~~la~g~~d---------g~v~vw~~~~~~~ 290 (696)
.++|||+.++..++ .+... +.+...++. +..... ...+|||||+.||..+.. ..|.+.|+++ +.
T Consensus 283 ~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~ 360 (419)
T PRK04043 283 NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY 360 (419)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC
Confidence 47888876665554 33333 334433322 111111 125899999999887654 2567777765 33
Q ss_pred eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC---cEEEEEccCCe
Q 005459 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR---GLTVWSVSGCR 340 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg---~v~vW~~~~~~ 340 (696)
.+.+.. . +.....+|||||+.|+-...++ .+.+.++.+..
T Consensus 361 -~~~LT~--------~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 361 -IRRLTA--------N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred -eEECCC--------C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 333433 1 2233588999999887665433 35566666643
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=0.00059 Score=74.68 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=66.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeE-EEeEeee-CcE--E---------EEEEeecC
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQ-SKGLLWL-GKI--I---------VVCNYIDS 517 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~-v~~~~w~-~~~--l---------v~~~~~~~ 517 (696)
..||+.+..|.-|+|+|+.-+|.-. +||+++.+ ++.. ....+. ++.|.|. ++. + ..+....-
T Consensus 521 espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~--~lr~--mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv 596 (1062)
T KOG1912|consen 521 ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLR--MLRL--MSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVV 596 (1062)
T ss_pred cCcceeeeecccCceEEEEecccchHHHhhccch--HHHH--HhhcCCcEEEEeecccCCCCcccccchhhhhhhhceee
Confidence 5689999999999999999999999 99997653 2211 122333 4567776 110 0 00000000
Q ss_pred CCeEEEEEeeCC--CC---Ccccee-EEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 518 SNTYELLFYPRY--HL---DQSSLL-CRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 518 ~~~~~lr~y~~~--~l---~~~~~~-~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.++.+.++|... .+ |..+.. ..+....+.+.|.-.+|.++++.-+|.+..|+...
T Consensus 597 ~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 597 LDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWKDDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred eccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhccCCeeEeecccCceeEEeccc
Confidence 122355666542 11 111100 01111112234555788999999999999999765
No 278
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.16 E-value=3.5e-05 Score=78.20 Aligned_cols=85 Identities=19% Similarity=0.343 Sum_probs=70.3
Q ss_pred ecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 253 ELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
..||-..+. ++|+||.+.|.++..|..|||=.... ...+..+-. +|+.-|..++.-++ +.|+||+.|+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa-~f~Iesfcl-------GH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA-TFVIESFCL-------GHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc-ccchhhhcc-------ccHhheeeeeeccC-ceeeecCCCCcE
Confidence 478988888 99999999999999999999977665 333333332 49999999998765 669999999999
Q ss_pred EEEEccCCeeEEEee
Q 005459 332 TVWSVSGCRLMSTIR 346 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~ 346 (696)
++||...++++.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999998886654
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.11 E-value=1.2e-05 Score=94.73 Aligned_cols=139 Identities=14% Similarity=0.170 Sum_probs=98.3
Q ss_pred EEeCCcEEEEeeccCCceeeeeeecce---ecCCCCeEE-EEEcCCCcEEEEEe---cCCeEEEEEccCCCceeeEEeec
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDK---ELGSGDAVC-ASIAPEQQILAVGT---RRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~v~-v~~sp~~~~la~g~---~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
|+..|..+..+-.|+.+.+|... ++. ++.|+.+.. ++|=. .++|+++ .++.+.+||.-........-..
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~- 2334 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTC- 2334 (2439)
T ss_pred hcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeee-
Confidence 44455555555556666667654 222 256777776 66654 6777764 4689999997653322221244
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---ee
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SM 375 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~ 375 (696)
|.+.++++++-|.-+.|++|+++|.|++||+...++.++++.- + ..+++++|+ .+
T Consensus 2335 -------H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~----------~-----~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2335 -------HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQAL----------D-----TREYFVTGSSEGNI 2392 (2439)
T ss_pred -------cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhh----------h-----hhheeeccCcccce
Confidence 9999999999999999999999999999999988887666541 1 127777776 89
Q ss_pred EEEcCCCceEEEEec
Q 005459 376 MQWDEYGYRLYAIEE 390 (696)
Q Consensus 376 ~~W~~~~~~l~~~~~ 390 (696)
++|+.....++..+.
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999999887777664
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=7.7e-06 Score=85.31 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=105.2
Q ss_pred cCCCCeEE-E-EEcCCCcEEEEEecCCeEEEEEccCCCcee------eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE
Q 005459 254 LGSGDAVC-A-SIAPEQQILAVGTRRGVVELYDLAESASLI------RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 254 ~~~~~~v~-v-~~sp~~~~la~g~~dg~v~vw~~~~~~~~~------~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg 325 (696)
.||...++ + +++. .+-+++++.|.+|++|.++..+..+ .+... |+.+|.++.|-.|-+.++++
T Consensus 732 ~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a--------Hkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA--------HKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred cCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhh--------ccCcccceeeeeccceeeec
Confidence 57887777 3 4444 4557799999999999998644333 23334 99999999999999888765
Q ss_pred EcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEec-ce-
Q 005459 326 WKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF-GK- 403 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~-~~- 403 (696)
||++.+||.+-++++...... ++. +....|.++.- .+
T Consensus 803 --D~giHlWDPFigr~Laq~~da-------------------------------pk~--------~a~~~ikcl~nv~~~ 841 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDA-------------------------------PKE--------GAGGNIKCLENVDRH 841 (1034)
T ss_pred --cCcceeecccccchhHhhhcC-------------------------------ccc--------CCCceeEecccCcch
Confidence 789999999888765433221 100 00001111111 01
Q ss_pred ee-eeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEcc
Q 005459 404 CC-LNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIR 481 (696)
Q Consensus 404 ~~-~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~ 481 (696)
.+ +-++...++++.|....+-. ..|+.- .-.+.|.-+|++++-+.|+.+|+|-..|.+ +-|.+
T Consensus 842 iliAgcsaeSTVKl~DaRsce~~-----------~E~kVc----na~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 842 ILIAGCSAESTVKLFDARSCEWT-----------CELKVC----NAPGPNALTRAIAVADKGNKLAAALSNGCIAILDAR 906 (1034)
T ss_pred heeeeccchhhheeeecccccce-----------eeEEec----cCCCCchheeEEEeccCcchhhHHhcCCcEEEEecC
Confidence 11 12234556666654433310 011111 112345669999999999999999999999 99999
Q ss_pred CCc
Q 005459 482 QKK 484 (696)
Q Consensus 482 sg~ 484 (696)
+|+
T Consensus 907 ~G~ 909 (1034)
T KOG4190|consen 907 NGK 909 (1034)
T ss_pred CCc
Confidence 986
No 281
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.08 E-value=0.0012 Score=71.21 Aligned_cols=248 Identities=19% Similarity=0.169 Sum_probs=127.5
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
++..+.+++.||.+..+|.++ ++.+-.... .+.+.+ +| ++..++.+..|+.+..||..+++.+..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-GKELWRAKL---------SSEVLS---PPLVANGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-CcEeeeecc---------Cceeec---CCEEECCEEEEECCCCeEEEEEcCCCceeeE
Confidence 467788899999999999887 555433322 122221 22 345677777889999999999888776
Q ss_pred eecccccc----eecccccCCCCCCccceecc--eeeEEEcCCCceEEEEec-CCc------ceEEEE--ec---ceeee
Q 005459 345 IRQISLSS----ISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEE-GSS------ERVLIF--SF---GKCCL 406 (696)
Q Consensus 345 l~~~~~~~----v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~-~~~------~~v~~~--~~---~~~~~ 406 (696)
.+...... ..++.+. ++ ..++.. ..+..+++++++++.... +.. .++..+ ++ +..+.
T Consensus 171 ~~~~~~~~~~~~~~sp~~~-~~----~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy 245 (377)
T TIGR03300 171 YSRVTPALTLRGSASPVIA-DG----GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVY 245 (377)
T ss_pred EccCCCceeecCCCCCEEE-CC----EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEE
Confidence 65431110 0111111 11 222211 156666766665433221 000 000000 01 33444
Q ss_pred eccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCc-
Q 005459 407 NRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKK- 484 (696)
Q Consensus 407 s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~- 484 (696)
.++.++.+..++..+++ ..|..- ..... ....++.++.+++.+|.+ .+|..+|+
T Consensus 246 ~~~~~g~l~a~d~~tG~-------------~~W~~~-----~~~~~------~p~~~~~~vyv~~~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 246 AVSYQGRVAALDLRSGR-------------VLWKRD-----ASSYQ------GPAVDDNRLYVTDADGVVVALDRRSGSE 301 (377)
T ss_pred EEEcCCEEEEEECCCCc-------------EEEeec-----cCCcc------CceEeCCEEEEECCCCeEEEEECCCCcE
Confidence 45555656555554433 234321 00111 122356778888889999 99998885
Q ss_pred -eEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEE--ccCCEEEEEEc
Q 005459 485 -WRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMD--VYEDYILVTYR 561 (696)
Q Consensus 485 -w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~--~~~~~llv~~~ 561 (696)
|+.-. . ... ......-.++.++++ +.+..|.+++.+ ...++.+.++...++..+ ..++.|++.+.
T Consensus 302 ~W~~~~--~-~~~-~~ssp~i~g~~l~~~-----~~~G~l~~~d~~---tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 302 LWKNDE--L-KYR-QLTAPAVVGGYLVVG-----DFEGYLHWLSRE---DGSFVARLKTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred EEcccc--c-cCC-ccccCEEECCEEEEE-----eCCCEEEEEECC---CCCEEEEEEcCCCccccCCEEECCEEEEEeC
Confidence 44211 0 000 112223356666665 234578888764 222444444433222222 24567888888
Q ss_pred CceEEEE
Q 005459 562 PFDVHIF 568 (696)
Q Consensus 562 d~~~~l~ 568 (696)
|+.+..|
T Consensus 370 dG~l~~~ 376 (377)
T TIGR03300 370 DGDLYAF 376 (377)
T ss_pred CceEEEe
Confidence 8877655
No 282
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.07 E-value=9.2e-06 Score=55.73 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=33.4
Q ss_pred cCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459 444 LPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 444 ~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~ 479 (696)
+..++.+|+.+|++++|+|++++||+|+.|+.+ +||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 346788999999999999999999999999999 997
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.06 E-value=0.0019 Score=77.97 Aligned_cols=116 Identities=10% Similarity=0.083 Sum_probs=79.7
Q ss_pred EEEEeCCc-EEEEeeccCCceeeeeeeccee--c-------------C----------CCCeEEEEEcCCCcEEEEEecC
Q 005459 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--L-------------G----------SGDAVCASIAPEQQILAVGTRR 277 (696)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~--~-------------~----------~~~~v~v~~sp~~~~la~g~~d 277 (696)
++++|||+ ++++...++.++.||...+... . + ...+..++++++|+++++-..+
T Consensus 745 IavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N 824 (1057)
T PLN02919 745 ISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN 824 (1057)
T ss_pred EEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC
Confidence 55788887 6666667778888876533210 0 0 1123458899999999999999
Q ss_pred CeEEEEEccCCCceeeEEeecc-CCC-----CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 278 GVVELYDLAESASLIRTVSLYD-WGY-----SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~-~~~-----~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
+.|++||.++ +. +.++.+.. .++ ..++-.....|+++|||+.+++-..++.|++||+.++..
T Consensus 825 ~rIrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 825 HKIKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999999876 33 33333211 001 111233567899999999999888999999999988764
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.05 E-value=0.00027 Score=68.10 Aligned_cols=198 Identities=10% Similarity=-0.011 Sum_probs=122.0
Q ss_pred EEEeeccCCceeeeeeecce-ecCCCCe--EE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459 233 MSCSVSKKGLKLAEFIKIDK-ELGSGDA--VC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (696)
Q Consensus 233 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~--v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g 308 (696)
+..+++|.++++.+...... ..-|..- +. ++++||++++++-+....|-.|.+++.++.+..+...+ .+.
T Consensus 131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~------t~D 204 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP------TSD 204 (344)
T ss_pred eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc------cCC
Confidence 34446666666655543211 1223322 33 89999999999999999999999998554443322211 344
Q ss_pred CeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEE---EeecccccceecccccCCCCCCccceecceeeEEEcCCCce
Q 005459 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMS---TIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYR 384 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~---~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~ 384 (696)
.=.+.+||.....+|++..||++.|||+..-. ++. .-+.|+.+.+..+.|+|.+.. .
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-------------------D 265 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-------------------D 265 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-------------------e
Confidence 45788999999999999999999999996532 222 223355677777777775410 1
Q ss_pred EEEEecCCcceEEEEecceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecC-eeeecCCCc-eEEEEEcC
Q 005459 385 LYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLP-VSYISQNWP-VQHVAASK 462 (696)
Q Consensus 385 l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~-I~~va~s~ 462 (696)
|+.. ..|...+..++. ..+.+. +.+.+| ..+..|+.. |....|+.
T Consensus 266 LLf~-sEhfs~~hv~D~------------------R~~~~~--------------q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 266 LLFI-SEHFSRVHVVDT------------------RNYVNH--------------QVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEE-ecCcceEEEEEc------------------ccCcee--------------eEEecCccccccccccccccccccC
Confidence 1111 233333322222 111110 111112 233445544 88889999
Q ss_pred CCCEEEEEeCCccEEEEccCCceEec
Q 005459 463 DGMFLAVAGLHGLILYDIRQKKWRVF 488 (696)
Q Consensus 463 dG~~la~ag~dG~i~w~~~sg~w~~f 488 (696)
++.-+-++.++..+-|++.+++-..|
T Consensus 313 ~n~s~~v~~e~~~ae~ni~srsR~~f 338 (344)
T KOG4532|consen 313 ENESNDVKNELQGAEYNILSRSRFSF 338 (344)
T ss_pred CCcccccccchhhheeeccccceecc
Confidence 99999999999888898887764444
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.04 E-value=2.2e-05 Score=92.55 Aligned_cols=178 Identities=11% Similarity=0.179 Sum_probs=123.5
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
.-|+.=+|...+-.+|+.||.|++|.... +..+.+++. .-+..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-~~~v~~~rt-------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGH-GQQVVCFRT-------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccC-CCeEEEeec-------cCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 33477788889999999999999999887 666666654 134789999999999999999999999999987
Q ss_pred CeeEEEeecccccceecccccCCCCCCccceecc------eeeEEEcCC-CceEEEEecCCcceE--EEEec-ceeeeec
Q 005459 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG------TSMMQWDEY-GYRLYAIEEGSSERV--LIFSF-GKCCLNR 408 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg------~~~~~W~~~-~~~l~~~~~~~~~~v--~~~~~-~~~~~s~ 408 (696)
.+...+-+-| ....+..+|-.. .+++. ..+..||.- ......+...|.... .++.| -+.++||
T Consensus 2282 pk~~~s~qch-nk~~~Df~Fi~s------~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2282 PKPYTSWQCH-NKALSDFRFIGS------LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred CcceeccccC-Cccccceeeeeh------hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 3334343334 333333333221 11211 167788853 222222224555554 66666 6778999
Q ss_pred cCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 409 GVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 409 ~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
+.+|-+++||+.+...+ |.++. +. ...++.+|+.+|.+ +|++..
T Consensus 2355 gr~G~v~l~D~rqrql~-------------------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLR-------------------------HTFQA----LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred CCcCcEEEeehHHHHHH-------------------------HHhhh----hh-hhheeeccCcccceEEEEccc
Confidence 99999999998776552 33333 33 55689999999999 999865
No 286
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.02 E-value=0.00024 Score=69.42 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=65.4
Q ss_pred eecceecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeE-EeeccCCCCCCCCCCeEEEEECC-CCCeEE
Q 005459 248 IKIDKELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRT-VSLYDWGYSMDDTGPVSCIAWTP-DNSAFA 323 (696)
Q Consensus 248 ~~~~~~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~-~~~~~~~~~~~h~g~V~~l~~sp-dg~~la 323 (696)
.+.+.|..|+-... +.|+- +-+++-+|+.||.+.-||++.+++.+-. .+. |+..|.+|.=|| ++.++|
T Consensus 156 e~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv--------H~~GV~SI~ss~~~~~~I~ 227 (339)
T KOG0280|consen 156 EKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV--------HTSGVVSIYSSPPKPTYIA 227 (339)
T ss_pred eecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee--------eecceEEEecCCCCCceEE
Confidence 34445677876666 77776 3578899999999999999954444432 444 899999999886 899999
Q ss_pred EEEcCCcEEEEEccC
Q 005459 324 VGWKSRGLTVWSVSG 338 (696)
Q Consensus 324 sg~~Dg~v~vW~~~~ 338 (696)
+|+.|-.|++||...
T Consensus 228 TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 228 TGSYDECIRVLDTRN 242 (339)
T ss_pred Eeccccceeeeehhc
Confidence 999999999999863
No 287
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.00 E-value=0.00076 Score=73.20 Aligned_cols=110 Identities=8% Similarity=0.046 Sum_probs=66.5
Q ss_pred EEEEEcCCCcE-EEEEecC---CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcC--CcEE
Q 005459 260 VCASIAPEQQI-LAVGTRR---GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKS--RGLT 332 (696)
Q Consensus 260 v~v~~sp~~~~-la~g~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~D--g~v~ 332 (696)
+.-.|||||+. ++..+.+ ..|.++|+.+ ++. +.+.. ..+.+...+|||||+.|+.. +.+ ..|.
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~--------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIAS--------SQGMLVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEec--------CCCcEEeeEECCCCCEEEEEEccCCCcEEE
Confidence 34899999984 6654443 4688888865 433 33333 35667778899999877643 334 3566
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceecce------eeEEEcCCCceE
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT------SMMQWDEYGYRL 385 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~------~~~~W~~~~~~l 385 (696)
++++.++.. ..+..+ ......+.|+||+ +.++-.+ .+...++.+++.
T Consensus 261 ~~dl~~g~~-~~LT~~-~~~d~~p~~SPDG----~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 261 LYDTNTKTL-TQITNY-PGIDVNGNFVEDD----KRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEECCCCcE-EEcccC-CCccCccEECCCC----CEEEEEECCCCCceEEEEECCCCCe
Confidence 778777753 334332 2223456799998 4333111 455566665554
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00046 Score=74.74 Aligned_cols=147 Identities=13% Similarity=0.163 Sum_probs=94.1
Q ss_pred CCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCC----ce----eeeeeecceecCCCCeEE-EEEcCCCcEEEEEec
Q 005459 206 PISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKG----LK----LAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTR 276 (696)
Q Consensus 206 ~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~----~~----~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~ 276 (696)
+......+++|....+..++.-.||.+-+.--...+ .+ .-++.-.+.+.||...|. +.||.+.+.|-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 344556666665555555555555543332211110 00 011111223368999998 999999999999999
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeE-EEeecccccceec
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLM-STIRQISLSSISS 355 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~-~~l~~~~~~~v~~ 355 (696)
+|.|.||-+-. ++....+-.. ..+..|.+|+|+.||+.++..++||.|.|=++.|.+.. ..|++.. ...
T Consensus 92 ~GlIiVWmlyk-gsW~EEMiNn------RnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~---l~h 161 (1189)
T KOG2041|consen 92 SGLIIVWMLYK-GSWCEEMINN------RNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL---LAH 161 (1189)
T ss_pred CceEEEEeeec-ccHHHHHhhC------cCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe---ccc
Confidence 99999999876 4432222111 14567999999999999999999999999999887753 2344421 234
Q ss_pred ccccCCC
Q 005459 356 PIVKPNQ 362 (696)
Q Consensus 356 ~~~sp~~ 362 (696)
+.+++|.
T Consensus 162 v~ws~D~ 168 (1189)
T KOG2041|consen 162 VLWSEDL 168 (1189)
T ss_pred eeecccH
Confidence 5667765
No 289
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.96 E-value=0.0038 Score=67.57 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred ceEEEEEeCCcEEEEEccC------------eEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCc
Q 005459 22 QQIIYFKVNNGLLLIASPC------------HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSL 89 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~------------~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg 89 (696)
..+++.+|.|..+|+..+. .|.|++.+ +.++....= +. |.+..+.|+.+ ..|++.+.||
T Consensus 31 ~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w-----~~-~~iv~~~wt~~-e~LvvV~~dG 101 (410)
T PF04841_consen 31 DYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPW-----DS-GRIVGMGWTDD-EELVVVQSDG 101 (410)
T ss_pred ceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEE-----CC-CCEEEEEECCC-CeEEEEEcCC
Confidence 4567889999999888655 68999885 445555432 22 78899999986 4555667899
Q ss_pred EEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceee
Q 005459 90 YLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFEL 169 (696)
Q Consensus 90 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~ 169 (696)
.+++||+.... .... +.... . ....+..+.+...-+..+++-+.++.++.+.=-.+......
T Consensus 102 ~v~vy~~~G~~-~fsl-~~~i~------------~---~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~- 163 (410)
T PF04841_consen 102 TVRVYDLFGEF-QFSL-GEEIE------------E---EKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRR- 163 (410)
T ss_pred EEEEEeCCCce-eech-hhhcc------------c---cCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhc-
Confidence 99999986322 1111 00000 0 01111122222222244666677777766521111100000
Q ss_pred ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeee
Q 005459 170 VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIK 249 (696)
Q Consensus 170 ~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~ 249 (696)
...+|..... .........+ ..++.++...+....+..+...+...
T Consensus 164 ---------~~~~p~~~~~-------------~~~~~~~~~i------------~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 164 ---------LPEIPGLWTK-------------FHWWPSWTVI------------PLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ---------cccCCCcccc-------------cccccccccc------------eEeecCcceEEEEecCCEEEEEEccc
Confidence 0011100000 0000001111 11223333333333333333222111
Q ss_pred cceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 250 IDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 250 ~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
.+....+...+.+++||++++||.-..+|.+.+.+.+- .+....+.. +-......|.|.-+.. ++..+. .
T Consensus 210 ~~~i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf-~~~~~e~~~-------~~~~~p~~~~WCG~da-v~l~~~-~ 279 (410)
T PF04841_consen 210 FKQIDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDF-SEKLCEFDT-------DSKSPPKQMAWCGNDA-VVLSWE-D 279 (410)
T ss_pred cccccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcc-cceeEEeec-------CcCCCCcEEEEECCCc-EEEEeC-C
Confidence 11112223444599999999999999999999988654 444444444 1245678999987753 444443 5
Q ss_pred cEEEEEccCC
Q 005459 330 GLTVWSVSGC 339 (696)
Q Consensus 330 ~v~vW~~~~~ 339 (696)
.+.+....+.
T Consensus 280 ~l~lvg~~~~ 289 (410)
T PF04841_consen 280 ELLLVGPDGD 289 (410)
T ss_pred EEEEECCCCC
Confidence 6777665444
No 290
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.94 E-value=0.0016 Score=78.65 Aligned_cols=248 Identities=11% Similarity=0.080 Sum_probs=132.7
Q ss_pred EEEEe-CCcEEEEeeccCCceeeeeeeccee--c--C-------------CCCeEEEEEcCCCcEEEEE-ecCCeEEEEE
Q 005459 224 FVLYS-NGQLMSCSVSKKGLKLAEFIKIDKE--L--G-------------SGDAVCASIAPEQQILAVG-TRRGVVELYD 284 (696)
Q Consensus 224 ~~~s~-dG~~~~~~~~d~~~~~~~~~~~~~~--~--~-------------~~~~v~v~~sp~~~~la~g-~~dg~v~vw~ 284 (696)
+++.+ +|+++++......+..++....... . + -..+..++++++++.|.++ ..++.|+++|
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 44554 4667776666666666664321100 0 1 0123458999988866554 4567899999
Q ss_pred ccCCCceeeEEeeccC-C--CCCC-----C-CCCeEEEEECC-CCCeEEEEEcCCcEEEEEccCCeeEEEeeccc-----
Q 005459 285 LAESASLIRTVSLYDW-G--YSMD-----D-TGPVSCIAWTP-DNSAFAVGWKSRGLTVWSVSGCRLMSTIRQIS----- 349 (696)
Q Consensus 285 ~~~~~~~~~~~~~~~~-~--~~~~-----h-~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~----- 349 (696)
..+ ..+.++.+... + +..+ . -..-..++|+| +|..+++.+.++.|++|+..++... ++.+.+
T Consensus 653 ~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 653 FVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred cCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 865 34555543110 0 0000 0 11235799999 6667777788899999999877542 222211
Q ss_pred ---------ccceecccccCCCCCCcc-ceecce---eeEEEcCCCceEEEEecCC-------------c---------c
Q 005459 350 ---------LSSISSPIVKPNQDCKYE-PLMSGT---SMMQWDEYGYRLYAIEEGS-------------S---------E 394 (696)
Q Consensus 350 ---------~~~v~~~~~sp~~~~~~~-~l~sg~---~~~~W~~~~~~l~~~~~~~-------------~---------~ 394 (696)
....+.++++|++ . .+++.. +++.|++.++.......+. . .
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG----~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDL----KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred CCCccccccccCccEEEEeCCC----CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0123446777876 4 333322 7888888765432211100 0 0
Q ss_pred e-EEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC
Q 005459 395 R-VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 395 ~-v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~ 472 (696)
. =++++. ++..++-..++.++.|+...+....+.-.|. .... .. ....++-.....+++++||+.+++-+.
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~--~G~~--dG---~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGK--AGFK--DG---KALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCC--cCCC--CC---cccccccCCceEEEEeCCCCEEEEECC
Confidence 0 023333 4445555556666666644332211111110 0000 00 000111123568999999998888888
Q ss_pred CccE-EEEccCCce
Q 005459 473 HGLI-LYDIRQKKW 485 (696)
Q Consensus 473 dG~i-~w~~~sg~w 485 (696)
++.| +||+.+++-
T Consensus 879 Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 879 NSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEEECCCCcc
Confidence 9999 999998763
No 291
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.0051 Score=62.95 Aligned_cols=260 Identities=16% Similarity=0.156 Sum_probs=133.1
Q ss_pred EEEEeCCcEEEEEc---------c--CeEEEeecCCceeeEEEeecChH-HHhhcccccEEEEcCCCcEEEEE--ecCcE
Q 005459 25 IYFKVNNGLLLIAS---------P--CHIELWSSSQHKVRLGKYKRDSE-SVQREGENLQAVWSPDTKLIAVV--TSSLY 90 (696)
Q Consensus 25 v~fs~dg~lla~~~---------~--~~v~iW~~~~~~~~l~~~~r~~~-sl~~~G~~~~v~wsPDg~~lav~--t~dg~ 90 (696)
+.+||||+.+.+++ + +-|.+||.. ...+.+...-..+ ....--.....++|+||+++.+. |-.-.
T Consensus 41 ~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 41 VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred eeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 56899999877651 1 359999994 6666665544432 11110112346788888877663 23334
Q ss_pred EEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeec
Q 005459 91 LHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELV 170 (696)
Q Consensus 91 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~ 170 (696)
|-+.|++..+ ....+.+.++. .+ +-..+..+..-|.||.+..+..+.+-.....
T Consensus 120 VtVVDl~~~k---------------------vv~ei~~PGC~-~i--yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~-- 173 (342)
T PF06433_consen 120 VTVVDLAAKK---------------------VVGEIDTPGCW-LI--YPSGNRGFSMLCGDGSLLTVTLDADGKEAQK-- 173 (342)
T ss_dssp EEEEETTTTE---------------------EEEEEEGTSEE-EE--EEEETTEEEEEETTSCEEEEEETSTSSEEEE--
T ss_pred EEEEECCCCc---------------------eeeeecCCCEE-EE--EecCCCceEEEecCCceEEEEECCCCCEeEe--
Confidence 5555554221 01112222211 11 1112356777788998888877743221111
Q ss_pred cCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce---eeee
Q 005459 171 HSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK---LAEF 247 (696)
Q Consensus 171 ~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~---~~~~ 247 (696)
+.-.|.++.+ -.+..-.|....+.+.+.+=+|+++-.......++ -|..
T Consensus 174 ---------~t~~F~~~~d-------------------p~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 174 ---------STKVFDPDDD-------------------PLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ---------EEEESSTTTS--------------------B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred ---------eccccCCCCc-------------------ccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 1112222221 11111123334445555666777776655544443 3443
Q ss_pred eec----ceecCCCCeEEEEEcCCCcEEEEEe--------cCC--eEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE
Q 005459 248 IKI----DKELGSGDAVCASIAPEQQILAVGT--------RRG--VVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI 313 (696)
Q Consensus 248 ~~~----~~~~~~~~~v~v~~sp~~~~la~g~--------~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l 313 (696)
.+. ..|. ..+.--+++++..+.|.+-- +|+ .|-+||+.+ .+.+..+.. ..++.+|
T Consensus 226 ~t~~e~~~~Wr-PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv~Ri~l---------~~~~~Si 294 (342)
T PF06433_consen 226 LTDAEKADGWR-PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRVARIPL---------EHPIDSI 294 (342)
T ss_dssp S-HHHHHTTEE-E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEEEEEEE---------EEEESEE
T ss_pred cCccccccCcC-CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEEEEEeC---------CCccceE
Confidence 221 1221 01222377887655444432 233 356666666 677777776 3468899
Q ss_pred EECCCCC-eEEEE-EcCCcEEEEEccCCeeEEEeecccc
Q 005459 314 AWTPDNS-AFAVG-WKSRGLTVWSVSGCRLMSTIRQISL 350 (696)
Q Consensus 314 ~~spdg~-~lasg-~~Dg~v~vW~~~~~~~~~~l~~~~~ 350 (696)
+.|.|.+ +|.+. ..++.+.++|..+++++.++++-|.
T Consensus 295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 9999888 55444 4578999999999999999887543
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.92 E-value=0.00012 Score=70.32 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=93.8
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceecce--------eeE
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--------SMM 376 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--------~~~ 376 (696)
|+++-.+=+.|--++.++.++.||.+.+.+...-. ++..+...+......... ..+ +.+.++. ..+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~-~~~----~~i~s~~~g~~n~~d~~~ 162 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKIC-RHG----NSILSGGCGNWNAQDNFY 162 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccccccccee-ecc----cEEecCCcceEeecccee
Confidence 55555555556667889999999999999986521 122222111111111000 011 3333322 344
Q ss_pred EEcCCCceEEEEecCCcceE--EEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe-eeecC
Q 005459 377 QWDEYGYRLYAIEEGSSERV--LIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV-SYISQ 451 (696)
Q Consensus 377 ~W~~~~~~l~~~~~~~~~~v--~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~ 451 (696)
+|+.+..+.+.........| .+-++ ...++.|+.||.+.+||..+... |. .|..|
T Consensus 163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~--------------------p~S~l~ah 222 (319)
T KOG4714|consen 163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM--------------------PVSLLKAH 222 (319)
T ss_pred eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc--------------------hHHHHHHh
Confidence 55554433333322222335 33344 55677888999999999877654 54 45689
Q ss_pred CCceEEEEEcC-CCCEEEEEeCCccE-EEEccC
Q 005459 452 NWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 452 ~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~s 482 (696)
..+|+.+-|.| ++..|.++++||.+ +||..+
T Consensus 223 k~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 223 KAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999998 67899999999999 999876
No 293
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.91 E-value=0.00019 Score=70.09 Aligned_cols=201 Identities=11% Similarity=0.089 Sum_probs=117.6
Q ss_pred cEEEEc--C-CCc-EEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEE
Q 005459 71 LQAVWS--P-DTK-LIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHML 146 (696)
Q Consensus 71 ~~v~ws--P-Dg~-~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~ll 146 (696)
..+.|+ | ||. .++.+-+.|.|.+|..+.........+- .+.++ .....--..+...+..++
T Consensus 73 ~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~l-------s~~ki--------~~~~~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 73 FDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGL-------SSKKI--------SVVEALSLDISTSGTKIF 137 (339)
T ss_pred ceeeeeeccCCccceeeeccccceEEEEeeccceeeeeeccc-------chhhh--------hheeeeEEEeeccCceEE
Confidence 466775 2 444 5667778888888888754432211110 00000 000001113344567788
Q ss_pred EEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEE
Q 005459 147 LGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVL 226 (696)
Q Consensus 147 v~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 226 (696)
++.++|.+..+.-+..... .-..+..|+..+...+|+.
T Consensus 138 vs~s~G~~~~v~~t~~~le----------------------------------~vq~wk~He~E~Wta~f~~-------- 175 (339)
T KOG0280|consen 138 VSDSRGSISGVYETEMVLE----------------------------------KVQTWKVHEFEAWTAKFSD-------- 175 (339)
T ss_pred EEcCCCcEEEEecceeeee----------------------------------ecccccccceeeeeeeccc--------
Confidence 9988998875432211100 0012333444444433322
Q ss_pred EeCCcEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
.+-.++.+++.|+.+.-||.+.++.+ .-|...|| +.-|| +..+||+|+-|-.|++||.++-++++..-+
T Consensus 176 -~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--- 251 (339)
T KOG0280|consen 176 -KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--- 251 (339)
T ss_pred -CCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc---
Confidence 23367788888888889998855443 23566666 66565 688999999999999999986455554322
Q ss_pred CCCCCCCCCCeEEEEECCC--CCeEEEEEcCCcEEEEEccCC
Q 005459 300 WGYSMDDTGPVSCIAWTPD--NSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 300 ~~~~~~h~g~V~~l~~spd--g~~lasg~~Dg~v~vW~~~~~ 339 (696)
-.|.|+.+.++|- +..|+++ .-++.+|-+...+
T Consensus 252 ------v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 252 ------VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDK 286 (339)
T ss_pred ------cccceEEEEecchhhhHHHHHH-HhcCceEEEeccc
Confidence 3589999999993 3344444 3467777776554
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.86 E-value=0.0038 Score=67.24 Aligned_cols=146 Identities=11% Similarity=-0.002 Sum_probs=75.0
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
..+.++..+|.+..+|..+ ++.+-...... +........+..+.-+| ++..+.++..+|.+..+|..+++......
T Consensus 191 ~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~-~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~ 268 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQT-GQPLWEQRVAL-PKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD 268 (377)
T ss_pred CEEEEECCCCEEEEEEccC-CCEeeeecccc-CCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec
Confidence 4677888899999999887 54432221100 00000000011111112 34567778888999999999887766554
Q ss_pred cccccceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecCCcceE-EEEe-cceeeeeccCCCCceeeeeeec
Q 005459 347 QISLSSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEGSSERV-LIFS-FGKCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~~~~~v-~~~~-~~~~~~s~~~d~~~~~w~~~~~ 422 (696)
.. ....+... + ...++.. ..+..++..+++++.....-.... .... .+..+..++.++.+.+++..++
T Consensus 269 ~~---~~~~p~~~--~---~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 269 AS---SYQGPAVD--D---NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred cC---CccCceEe--C---CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCC
Confidence 21 11122221 1 1222222 167778887776554332111111 1111 1556777778888877775555
Q ss_pred CC
Q 005459 423 ED 424 (696)
Q Consensus 423 ~~ 424 (696)
+.
T Consensus 341 ~~ 342 (377)
T TIGR03300 341 SF 342 (377)
T ss_pred CE
Confidence 43
No 295
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.85 E-value=9.2e-05 Score=75.24 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=63.7
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCC
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYG 382 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~ 382 (696)
|-.-+++++||||++.|.++.+|..||+=.......+.++--+|..-|+.++.-++ .+++||+ ++++|+..+
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-----~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-----YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-----ceeeecCCCCcEEEEeccc
Confidence 99999999999999999999999999998887766665555433777888887776 4566665 889999988
Q ss_pred ceEEEEe
Q 005459 383 YRLYAIE 389 (696)
Q Consensus 383 ~~l~~~~ 389 (696)
++++.++
T Consensus 225 gk~L~t~ 231 (390)
T KOG3914|consen 225 GKLLDTC 231 (390)
T ss_pred CCccccc
Confidence 8877554
No 296
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.83 E-value=0.005 Score=64.71 Aligned_cols=308 Identities=13% Similarity=0.126 Sum_probs=158.3
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEEEEEcCCCcEEEEEecCC---------------eEEEEEcc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVCASIAPEQQILAVGTRRG---------------VVELYDLA 286 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~v~~sp~~~~la~g~~dg---------------~v~vw~~~ 286 (696)
+.++|-|+.++..-. ..+.+|......++ .-|.+.-.+.|||.+++|.+=+..+ .+.+||+.
T Consensus 38 ~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~ 116 (561)
T COG5354 38 VSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA 116 (561)
T ss_pred eeecCcchheehhhc-cceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc
Confidence 447888888775433 34677776544332 3355545599999999999866433 48999998
Q ss_pred CCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCC
Q 005459 287 ESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCK 365 (696)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~ 365 (696)
. +..+..+..... +...+ -+.||-|.+++|=-.. ..+.+.++...-....++.-....+....++|.+.
T Consensus 117 s-g~iv~sf~~~~q------~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n-- 186 (561)
T COG5354 117 S-GMIVFSFNGISQ------PYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGN-- 186 (561)
T ss_pred C-ceeEeeccccCC------cccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEEecCCCC--
Confidence 8 777777766221 11133 6889998887765433 57888887222111111111122355556666641
Q ss_pred ccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeecc---CCCCceeeee------------------eecCC
Q 005459 366 YEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRG---VSGMTYARQV------------------IYGED 424 (696)
Q Consensus 366 ~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~---~d~~~~~w~~------------------~~~~~ 424 (696)
.. ....|.++... ....-+++.+...+.+.+-+ .|+--.-|.. ..|+.
T Consensus 187 ~~------~la~~tPEk~~-----kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 187 HD------ELAYWTPEKLN-----KPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred Cc------eEEEEccccCC-----CCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 11 12344443211 00001112222211111111 0110111111 11223
Q ss_pred eEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEe--CCccE-EEEccCCceEecCCccceeeeEEEe
Q 005459 425 RLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAG--LHGLI-LYDIRQKKWRVFGDITQEQKIQSKG 501 (696)
Q Consensus 425 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag--~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~ 501 (696)
.+++++-.+ ..+|-.. .-.+||-..+|+|+++.+|+.+ ..-.+ ++|+... .+...-+..++.+ -
T Consensus 256 nLyl~~~~e--------~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~rNT~---~ 322 (561)
T COG5354 256 NLYLLRITE--------RSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQKRNTI---F 322 (561)
T ss_pred eEEEEeecc--------cccceec-cccccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcccccc---c
Confidence 333332211 1123322 5578999999999999887755 45566 8888765 3322222222210 1
Q ss_pred EeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCC-ccEEEEccCCEEEEEEc------CceEEEEEEE
Q 005459 502 LLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLA-KPIVMDVYEDYILVTYR------PFDVHIFHVK 571 (696)
Q Consensus 502 ~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~-~~l~~~~~~~~llv~~~------d~~~~l~~~~ 571 (696)
+.=..++++.+++. ..+..+-+|++. +.+... ....++ ...-.++++.++.+.+. |+.+.||++.
T Consensus 323 fsp~~r~il~agF~--nl~gni~i~~~~---~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 323 FSPHERYILFAGFD--NLQGNIEIFDPA---GRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred ccCcccEEEEecCC--ccccceEEeccC---CceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence 12245667776553 455677788774 222222 222222 22334578888887433 5778888874
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.79 E-value=0.0004 Score=66.70 Aligned_cols=74 Identities=20% Similarity=0.317 Sum_probs=61.3
Q ss_pred eEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEE
Q 005459 259 AVC-ASIAP-EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 259 ~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~ 335 (696)
++. ++-+| ...++++|+.||.+-+||++....+.-.++. |+.+++.+-|.| ++..|+++++||.+..||
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a--------hk~~i~eV~FHpk~p~~Lft~sedGslw~wd 252 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA--------HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD 252 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH--------hhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence 354 77777 4678889999999999999984344445556 999999999999 889999999999999999
Q ss_pred ccCCe
Q 005459 336 VSGCR 340 (696)
Q Consensus 336 ~~~~~ 340 (696)
..+.-
T Consensus 253 as~~~ 257 (319)
T KOG4714|consen 253 ASTTF 257 (319)
T ss_pred CCCce
Confidence 88753
No 298
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.74 E-value=0.00014 Score=78.01 Aligned_cols=74 Identities=23% Similarity=0.452 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
..++|+++||+...++.||.||+|.+||... + ..... . +.-..+.++|+|+|..+++|++.|.+.+||+
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-~-~t~~~-k--------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-G-VTLLA-K--------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-C-eeeee-e--------ecccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 4567799999999999999999999999875 2 22222 2 3445789999999999999999999999998
Q ss_pred cCCee
Q 005459 337 SGCRL 341 (696)
Q Consensus 337 ~~~~~ 341 (696)
.-...
T Consensus 329 ALspi 333 (545)
T PF11768_consen 329 ALSPI 333 (545)
T ss_pred ecCcc
Confidence 65543
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.72 E-value=0.00016 Score=70.79 Aligned_cols=265 Identities=13% Similarity=0.109 Sum_probs=137.1
Q ss_pred HhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccc-----cCCCCCCCceeeeeeEEEeeeccccccceeEEEe
Q 005459 64 VQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQ-----IGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI 138 (696)
Q Consensus 64 l~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~ 138 (696)
..+...+++|.|-..|.+||+|...|.+.+|.-.....-.+ .++|.++=..+.+++ +++++ ..|.-+
T Consensus 23 ~tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSle--ieEKi------n~I~w~ 94 (460)
T COG5170 23 STEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLE--IEEKI------NAIEWF 94 (460)
T ss_pred ccccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhcc--HHHHh------hheeee
Confidence 34456778999999999999999999999997654431101 223333212222221 12221 122222
Q ss_pred eeC-CCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCC-cccccCCCccccCCcCCCcccEEEE--
Q 005459 139 VSD-NKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNG-LASVDTSGAFVSDHKFPISSAIIWL-- 214 (696)
Q Consensus 139 ~~~-~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~-l~~~~~~~~~~~~~~~~~~~~i~~~-- 214 (696)
.+. +..+++.+.+.+|.+|.......... +...+...-+++-++ +.+... +..-.+..+...|..-
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~v-------a~nnls~~~~~~~~g~~~s~~~---l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVV-------AENNLSDSFHSPMGGPLTSTKE---LLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhh-------hccccccccccccCCCcCCHHH---hhcccccccceEEEeccc
Confidence 222 36789999999999864332211100 111111111111111 100000 0000111222222110
Q ss_pred -EEccC---cceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCC-----CCeEE-EEEcCC-CcEEEEEecC
Q 005459 215 -ELCLP---MRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGS-----GDAVC-ASIAPE-QQILAVGTRR 277 (696)
Q Consensus 215 -~~~~~---~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~-----~~~v~-v~~sp~-~~~la~g~~d 277 (696)
.|... -...+.+.+|...+++ +.|-.+++|+......- ..| ...+. ..|+|. ...+.-.+..
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk 243 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK 243 (460)
T ss_pred eeccccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence 01100 0234557777776664 56777889987543210 112 12344 788985 5566777888
Q ss_pred CeEEEEEccCCCce---ee----EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC-CeeEEEeecc
Q 005459 278 GVVELYDLAESASL---IR----TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG-CRLMSTIRQI 348 (696)
Q Consensus 278 g~v~vw~~~~~~~~---~~----~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~-~~~~~~l~~~ 348 (696)
|+|++-|++...-+ .+ ++.+.+...-.+-...|..+.|+|+|+++++-.. -+|++||+.- ..++.|+.-|
T Consensus 244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999999852111 11 1111111111123457889999999999998877 7999999954 3456666544
No 300
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00016 Score=77.59 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=62.8
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
..+.|||.-.+||.+..+|.|.++.++ .+.+-++.. |.-.|+ +++|.|||+.||+|..||+|++-|++.
T Consensus 24 ~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~--------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 24 KRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPI--------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred EEEEEcCccchhheeccCCcEEEEEec--cceeEeccC--------CCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 349999999999999999999999887 344555554 455565 999999999999999999999999998
Q ss_pred CeeEEE
Q 005459 339 CRLMST 344 (696)
Q Consensus 339 ~~~~~~ 344 (696)
+..+..
T Consensus 94 ~~~l~~ 99 (665)
T KOG4640|consen 94 GGRLVS 99 (665)
T ss_pred CCceec
Confidence 876655
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0017 Score=71.72 Aligned_cols=184 Identities=16% Similarity=0.187 Sum_probs=112.9
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
.|++++ ++.||.|+-+|.|++++.+. .. .+... |+.. .-+|.++|||+.||+|-|-++.+.
T Consensus 43 s~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~--------~s~~------~~~Gey~asCS~DGkv~I~sl~~~ 103 (846)
T KOG2066|consen 43 SCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFD--------HSSS------ILEGEYVASCSDDGKVVIGSLFTD 103 (846)
T ss_pred HHHHhh--cceeeeccccceEEEEecCC--cc-ccccc--------cccc------ccCCceEEEecCCCcEEEeeccCC
Confidence 346665 56799999999999999864 33 33333 4443 568999999999999999999998
Q ss_pred eeEEEeecccccceecccccCCCC-CCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee-
Q 005459 340 RLMSTIRQISLSSISSPIVKPNQD-CKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR- 417 (696)
Q Consensus 340 ~~~~~l~~~~~~~v~~~~~sp~~~-~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w- 417 (696)
+..+++.-+ ..+.+++++|+-. .....+++| +.-| +.+.
T Consensus 104 ~~~~~~df~--rpiksial~Pd~~~~~sk~fv~G------------------------------------G~ag-lvL~e 144 (846)
T KOG2066|consen 104 DEITQYDFK--RPIKSIALHPDFSRQQSKQFVSG------------------------------------GMAG-LVLSE 144 (846)
T ss_pred ccceeEecC--CcceeEEeccchhhhhhhheeec------------------------------------Ccce-EEEeh
Confidence 877776654 4688888888821 111223322 2221 1000
Q ss_pred -eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCCceEecCCccc--e
Q 005459 418 -QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQKKWRVFGDITQ--E 494 (696)
Q Consensus 418 -~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~--e 494 (696)
..+...+ +.....-.+||.++.| .|.++|-|..+|.-+||+.+++--.+-.... .
T Consensus 145 r~wlgnk~--------------------~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~ 202 (846)
T KOG2066|consen 145 RNWLGNKD--------------------SVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSV 202 (846)
T ss_pred hhhhcCcc--------------------ceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCCCC
Confidence 0001111 1122334678998888 6889999999999999999886433221111 1
Q ss_pred e-eeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeC
Q 005459 495 Q-KIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPR 528 (696)
Q Consensus 495 ~-~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~ 528 (696)
+ +..-..+.|.++..++.+.. ..|++.+.
T Consensus 203 R~e~fpphl~W~~~~~LVIGW~-----d~v~i~~I 232 (846)
T KOG2066|consen 203 RPELFPPHLHWQDEDRLVIGWG-----DSVKICSI 232 (846)
T ss_pred CcccCCCceEecCCCeEEEecC-----CeEEEEEE
Confidence 1 11122688976554444343 34555544
No 302
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0082 Score=67.05 Aligned_cols=137 Identities=19% Similarity=0.289 Sum_probs=90.1
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCC-ceeeEEeeccCCCCCCCCCCeEEEEECCCCCe-EEEEEcCCcEEEE
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESA-SLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSA-FAVGWKSRGLTVW 334 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~-lasg~~Dg~v~vW 334 (696)
.+++ +++|.+-+.+|+|-.||.|..+.=+-.. +..+.. +...-.++|+.+++..||+. ++++.. ..|.++
T Consensus 126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~------~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y 198 (933)
T KOG2114|consen 126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD------YSHRGKEPITGLALRSDGKSVLFVATT-EQVMLY 198 (933)
T ss_pred CcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee------eeccCCCCceeeEEecCCceeEEEEec-ceeEEE
Confidence 3455 9999999999999999999998743210 111111 11124679999999999997 444444 679999
Q ss_pred EccCCe-eEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEec-CCcceEEEEecceee
Q 005459 335 SVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIEE-GSSERVLIFSFGKCC 405 (696)
Q Consensus 335 ~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~~-~~~~~v~~~~~~~~~ 405 (696)
++.+.. ..+.+..+| .+.++..+++.. ++.+.+++ -+.+++..+...-.++. ||......++++-.+
T Consensus 199 ~l~gr~p~~~~ld~~G-~~lnCss~~~~t---~qfIca~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L 268 (933)
T KOG2114|consen 199 SLSGRTPSLKVLDNNG-ISLNCSSFSDGT---YQFICAGSEFLYFYDSDGRGPCFAFEVGEKKEMLVFSFGLLL 268 (933)
T ss_pred EecCCCcceeeeccCC-ccceeeecCCCC---ccEEEecCceEEEEcCCCcceeeeecCCCeEEEEEEecCEEE
Confidence 998665 355566663 457777777654 24555555 66778877655555555 776666666654433
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0043 Score=63.40 Aligned_cols=77 Identities=13% Similarity=0.276 Sum_probs=62.5
Q ss_pred ecCCCCeEE-EEEcCCCc-EEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCC-eEEEEEcCC
Q 005459 253 ELGSGDAVC-ASIAPEQQ-ILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNS-AFAVGWKSR 329 (696)
Q Consensus 253 ~~~~~~~v~-v~~sp~~~-~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~-~lasg~~Dg 329 (696)
+.+|...+. ++|||..+ ++..++.+.+|+|.|+.+ ......... | ..+++++|.-|.. +|.+|-.+|
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a--------~-~~~wSC~wDlde~h~IYaGl~nG 258 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIA--------Y-NQIWSCCWDLDERHVIYAGLQNG 258 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheec--------c-CCceeeeeccCCcceeEEeccCc
Confidence 366778888 99999877 889999999999999987 444444544 5 7899999998654 677888899
Q ss_pred cEEEEEccCC
Q 005459 330 GLTVWSVSGC 339 (696)
Q Consensus 330 ~v~vW~~~~~ 339 (696)
.|.++|+...
T Consensus 259 ~VlvyD~R~~ 268 (463)
T KOG1645|consen 259 MVLVYDMRQP 268 (463)
T ss_pred eEEEEEccCC
Confidence 9999999643
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.57 E-value=0.00059 Score=74.25 Aligned_cols=269 Identities=15% Similarity=0.183 Sum_probs=158.3
Q ss_pred EEEEeCCcEEEEeeccCCceeeeee---ecceecCCCCe--EE-EEEcC--CCcEEEEEecCCeEEEEEccCCCc--eee
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFI---KIDKELGSGDA--VC-ASIAP--EQQILAVGTRRGVVELYDLAESAS--LIR 293 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~--v~-v~~sp--~~~~la~g~~dg~v~vw~~~~~~~--~~~ 293 (696)
+.+.|.|+-++.++.-+ +.+.|+. ++.++.-|..+ +. +.||| .-.+-++...+..-.+|++..... .-.
T Consensus 30 ~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef 108 (1081)
T KOG0309|consen 30 VSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEF 108 (1081)
T ss_pred eeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEE
Confidence 45678888776665443 2223332 33344334332 22 55555 345555666666777899875322 223
Q ss_pred EEeeccCCCCCCCCCCeEEEEECCCC-CeEEEEEcCCcEEEEEccCCe-eEEEeecccccceecccccCCCCCCccceec
Q 005459 294 TVSLYDWGYSMDDTGPVSCIAWTPDN-SAFAVGWKSRGLTVWSVSGCR-LMSTIRQISLSSISSPIVKPNQDCKYEPLMS 371 (696)
Q Consensus 294 ~~~~~~~~~~~~h~g~V~~l~~spdg-~~lasg~~Dg~v~vW~~~~~~-~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s 371 (696)
.+++ |+.+|+.+.|.|.. ..||+++-|-.+-.||+.... .+.....- .+..+.++++-..+ ..+++
T Consensus 109 ~lhg--------hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p---~vlas 176 (1081)
T KOG0309|consen 109 VLHG--------HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDP---NVLAS 176 (1081)
T ss_pred EEec--------CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCc---chhhh
Confidence 4556 99999999999854 489999999999999997653 23322221 12234455543221 33443
Q ss_pred ce--eeEEEcCC-CceEEEEecCCcceEEEEec----ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeec
Q 005459 372 GT--SMMQWDEY-GYRLYAIEEGSSERVLIFSF----GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNL 444 (696)
Q Consensus 372 g~--~~~~W~~~-~~~l~~~~~~~~~~v~~~~~----~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~ 444 (696)
.- .+.+|+.. ++..+...++|...+..+.| -..+.+.+.|++++.|+.......
T Consensus 177 shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e------------------- 237 (1081)
T KOG0309|consen 177 SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE------------------- 237 (1081)
T ss_pred ccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc-------------------
Confidence 32 78899985 55677778888888877777 345789999999999997654431
Q ss_pred CeeeecCCCceEEEEEcCCCCEEEEEeCCc--cE-EEEccC--CceEecCCccceeeeE-----EEeEeeeCc-------
Q 005459 445 PVSYISQNWPVQHVAASKDGMFLAVAGLHG--LI-LYDIRQ--KKWRVFGDITQEQKIQ-----SKGLLWLGK------- 507 (696)
Q Consensus 445 ~~~~~~~~~~I~~va~s~dG~~la~ag~dG--~i-~w~~~s--g~w~~f~~~~~e~~~~-----v~~~~w~~~------- 507 (696)
+......+.||.-..+-|=|.-..+--..| .+ .++.+. .+|..|.....-..|. |..+.|...
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~ 317 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDY 317 (1081)
T ss_pred cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCC
Confidence 333344566777777777655332222222 33 554432 3566665444333333 345667522
Q ss_pred ----E-EEEEEeecCCCeEEEEEeeCC
Q 005459 508 ----I-IVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 508 ----~-lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+ ||+= +++..||+|+.+
T Consensus 318 d~rdfQLVTW-----SkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 318 DSRDFQLVTW-----SKDQTLRLWPID 339 (1081)
T ss_pred CccceeEEEe-----ecCCceEeeecc
Confidence 2 3332 455677888765
No 305
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.56 E-value=0.0033 Score=61.90 Aligned_cols=272 Identities=15% Similarity=0.175 Sum_probs=143.6
Q ss_pred CceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEee------------cChHHHhhcccccEEEEcCCCc--EEEEE
Q 005459 21 SQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYK------------RDSESVQREGENLQAVWSPDTK--LIAVV 85 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~------------r~~~sl~~~G~~~~v~wsPDg~--~lav~ 85 (696)
-...|.|.-.|.+||++. .+.|.++.-++.. -+.++ .-.++++-...+..+.|-.|+. .+.+.
T Consensus 28 ~ItaVefd~tg~YlatGDkgGRVvlfer~~s~--~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 28 KITAVEFDETGLYLATGDKGGRVVLFEREKSY--GCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred eeeEEEeccccceEeecCCCceEEEeeccccc--ccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 344477888899999885 4678887654211 11110 1123333345667888876665 57888
Q ss_pred ecCcEEEEEEEEecCccc------ccCCCCCCCceeeee------eE--------EEeeeccccccceeEEEeeeCC-Ce
Q 005459 86 TSSLYLHIFKVQITEKSI------QIGGKQPSGLFFIKI------SL--------VLNEQLPFAEKGLSVSNIVSDN-KH 144 (696)
Q Consensus 86 t~dg~l~l~~l~~~~~~~------~~~~~~~~~~~~~~~------~l--------~~~~~~~~~~~~~~v~~~~~~~-~~ 144 (696)
|.|.+|++|++...+.+. ....|.+.+..+.+. .+ ....++....+.-.+.+++.+. ++
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 999999999997553221 111122111111110 00 0011111234444555665544 33
Q ss_pred EEEEecCCcEEEEecCCccc-cceee-ccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcc-
Q 005459 145 MLLGLSDGSLYSISWKGEFY-GAFEL-VHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMR- 221 (696)
Q Consensus 145 llv~t~~g~i~~~~w~~~~~-~~~~~-~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~- 221 (696)
.++..++=.|-+ |+.+.. +.+.+ ..+|+.-. +-..-|++-+|+|.++
T Consensus 186 t~lSaDdLrINL--Wnl~i~D~sFnIVDiKP~nme----------------------------eLteVItSaeFhp~~cn 235 (460)
T COG5170 186 TLLSADDLRINL--WNLEIIDGSFNIVDIKPHNME----------------------------ELTEVITSAEFHPEMCN 235 (460)
T ss_pred eeeeccceeeee--ccccccCCceEEEeccCccHH----------------------------HHHHHHhhcccCHhHcc
Confidence 444445545544 654331 22221 01111100 0012356667777774
Q ss_pred eEEEEEeCCcEEEEeeccCCceeeeeeec------cee-------------cCCCCeEE-EEEcCCCcEEEEEecCCeEE
Q 005459 222 LLFVLYSNGQLMSCSVSKKGLKLAEFIKI------DKE-------------LGSGDAVC-ASIAPEQQILAVGTRRGVVE 281 (696)
Q Consensus 222 ~~~~~s~dG~~~~~~~~d~~~~~~~~~~~------~~~-------------~~~~~~v~-v~~sp~~~~la~g~~dg~v~ 281 (696)
.+..-++.|. +++-|.+.. .++ .+....+. +.|+++|++|++-.- -+|+
T Consensus 236 ~fmYSsSkG~----------Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvk 304 (460)
T COG5170 236 VFMYSSSKGE----------IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVK 304 (460)
T ss_pred eEEEecCCCc----------EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEE
Confidence 3333334444 444443311 000 11234456 899999999987543 5999
Q ss_pred EEEccCCCceeeEEeeccC-----CCCCCCCCCe---EEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 282 LYDLAESASLIRTVSLYDW-----GYSMDDTGPV---SCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 282 vw~~~~~~~~~~~~~~~~~-----~~~~~h~g~V---~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
+||++....+++++..+.- -... ....| ..+.||.|.+.+.+|+..+..-++-+
T Consensus 305 iwDvnm~k~pikTi~~h~~l~~~l~d~Y-EnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 305 IWDVNMAKNPIKTIPMHCDLMDELNDVY-ENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEecccccCCceeechHHHHHHHHHhhh-hccceeeeEEEEecCCcccccccccccceeeecc
Confidence 9999986677887754210 0000 12233 35889999999999999877766653
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.56 E-value=0.015 Score=58.49 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=75.3
Q ss_pred EEEEeCCcEEEEeeccCCc------eeeeeeec-c--ee-cCCCCeEEEEEcCCCcEEE-EEecCCeEEEEEccCCCc-e
Q 005459 224 FVLYSNGQLMSCSVSKKGL------KLAEFIKI-D--KE-LGSGDAVCASIAPEQQILA-VGTRRGVVELYDLAESAS-L 291 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~------~~~~~~~~-~--~~-~~~~~~v~v~~sp~~~~la-~g~~dg~v~vw~~~~~~~-~ 291 (696)
+++.++|+++++....... +++-.... + .. .+-..+--++|+||++.|. +-+..+.|..|+++..+. .
T Consensus 91 ~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~ 170 (246)
T PF08450_consen 91 VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL 170 (246)
T ss_dssp EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE
T ss_pred EEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccce
Confidence 4477888887776643221 12222111 1 11 1112222399999998665 567788999999875333 1
Q ss_pred --eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccc
Q 005459 292 --IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 292 --~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
.+.+.... .-.+..-.+++.++|+..++.+..+.|.+++.. ++++..+.-. ...+++++|
T Consensus 171 ~~~~~~~~~~-----~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~f 232 (246)
T PF08450_consen 171 SNRRVFIDFP-----GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAF 232 (246)
T ss_dssp EEEEEEEE-S-----SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEE
T ss_pred eeeeeEEEcC-----CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEE
Confidence 12221100 012347789999999999999989999999998 5566666544 235677777
No 307
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.004 Score=68.05 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=78.3
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
.++...++.++.++..|.+.+.+-..++.. .+-...++ +.+|++..++|.|+..|.|.||.+.. ..........
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~~~t 117 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLDYVT 117 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcceeec
Confidence 345566677777777666666654433221 12345666 89999999999999999999999886 3221111110
Q ss_pred cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 299 DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
. .-..|...|++++||+||..+.+|...|+|.+-.+..
T Consensus 118 ~--~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 P--CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred c--ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 0 0112788999999999999999999999998887765
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.56 E-value=0.014 Score=59.19 Aligned_cols=93 Identities=13% Similarity=0.204 Sum_probs=59.9
Q ss_pred EEEcC-CCcEEEEEecCCe-EEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-----CCcEEEE
Q 005459 262 ASIAP-EQQILAVGTRRGV-VELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-----SRGLTVW 334 (696)
Q Consensus 262 v~~sp-~~~~la~g~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-----Dg~v~vW 334 (696)
++++| +...+|++-.-|+ ..+||..+ ++..+.+...+--.-.+| -.|||||++|.+.-. .|.|-||
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~-g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRT-GQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCC-CceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 67788 6778888888775 47888887 666665554111111123 579999999998633 4689999
Q ss_pred Ecc-CCeeEEEeecccccceecccccCCC
Q 005459 335 SVS-GCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 335 ~~~-~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
|+. +.+.+..+..+|-. -..+.+.||+
T Consensus 83 d~~~~~~ri~E~~s~GIG-PHel~l~pDG 110 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIG-PHELLLMPDG 110 (305)
T ss_pred ECcCCcEEEeEecCCCcC-hhhEEEcCCC
Confidence 998 55566666655332 1233445555
No 309
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.34 E-value=0.05 Score=63.31 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=125.3
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEE
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLL 147 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv 147 (696)
++++++.|.-|...|.+++..|.|.+-|.++... ..-+. ........++++|.+.+++
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------eivg~---vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------EIVGN---VDNGISAASWSPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------eeeee---ccCceEEEeecCCCcEEEE
Confidence 6889999999999999999999999987764321 00111 0111233466778888888
Q ss_pred EecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCC-------CccccCCcCCCcccEEEEEEccCc
Q 005459 148 GLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTS-------GAFVSDHKFPISSAIIWLELCLPM 220 (696)
Q Consensus 148 ~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~ 220 (696)
.|..+++....-+-+...... .+....+.-.|-. .-|++.. +.+.......+...+..++.+. -
T Consensus 127 iT~~~tll~mT~~f~~i~E~~-----L~~d~~~~sk~v~---VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~ 197 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKP-----LDADDERKSKFVN---VGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-H 197 (1265)
T ss_pred EeCCcEEEEEeccccchhccc-----cccccccccccce---ecccccceeeecchhhhcccccccccccccchhhcc-C
Confidence 888888877643222111111 1000000000000 0011110 0000000000000011111110 0
Q ss_pred ceEEEEEeCCcEEEEee-----ccCCceeeeeeeccee----cCCCCeEEEEEcCCCcEEEEEe---cCCeEEEEEccCC
Q 005459 221 RLLFVLYSNGQLMSCSV-----SKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGT---RRGVVELYDLAES 288 (696)
Q Consensus 221 ~~~~~~s~dG~~~~~~~-----~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~~~~la~g~---~dg~v~vw~~~~~ 288 (696)
...+.+--||+++++.. ..+.+++||.. +..- ....-.-+++|-|.|.++|+-. .|+.|.+|.-+.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG- 275 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG- 275 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-
Confidence 12244567888887743 23678899876 2110 0111123489999999999864 456788887542
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE---EEcCCcEEEEEccCCe
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV---GWKSRGLTVWSVSGCR 340 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las---g~~Dg~v~vW~~~~~~ 340 (696)
..-..+.. .+| ....+|..++|+.++..||+ ..+...|++|-+.+..
T Consensus 276 -L~hg~f~l-~~p---~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 276 -LRHGEFVL-PFP---LDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred -cccccccc-CCc---ccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11111111 011 13445999999999999998 5665669999887654
No 310
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.0008 Score=67.20 Aligned_cols=116 Identities=9% Similarity=0.094 Sum_probs=82.9
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCC----CceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEcCCcEEEEEc
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAES----ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~Dg~v~vW~~ 336 (696)
..|.-.++++..|+.+|.|.++|++.. +.+.+.+. |...|++|.--. ++++|.+.+.+|+|++||.
T Consensus 258 lQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly---------h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 258 LQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY---------HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred HHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE---------cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 677778899999999999999999873 12223332 788899987666 7889999999999999999
Q ss_pred cCCee---EEEeecccccceecccccCCCCCCc-cceecce---eeEEEcCCCceEEEEec
Q 005459 337 SGCRL---MSTIRQISLSSISSPIVKPNQDCKY-EPLMSGT---SMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 337 ~~~~~---~~~l~~~~~~~v~~~~~sp~~~~~~-~~l~sg~---~~~~W~~~~~~l~~~~~ 390 (696)
.--++ +.+..|| |+..+.-|..-... ..++++. -.++|..+.++|+.+..
T Consensus 329 R~~K~~~~V~qYeGH----vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGH----VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhhcccceeeeecc----cccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 66555 8888888 34444333322111 3333333 66789988888887764
No 311
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.29 E-value=0.068 Score=58.12 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=99.6
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
+..+++||+|+.+++ +.||.-.+|.... .... ..|.-....|++.| .+|+-...++|+++.-..
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~k-------------~~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRNK-------------AFGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTT-TEEE-------------EEEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccC-Cccc-------------ccCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 445999999999999 7789999998443 2222 12345778999954 577777778898874332
Q ss_pred CeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceeee
Q 005459 339 CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYARQ 418 (696)
Q Consensus 339 ~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w~ 418 (696)
......++- .. ....++. |.++... .++.+.++|
T Consensus 99 ~~~~k~i~~-------------~~----------~~~~If~---G~LL~~~--------------------~~~~i~~yD 132 (443)
T PF04053_consen 99 NEVVKSIKL-------------PF----------SVEKIFG---GNLLGVK--------------------SSDFICFYD 132 (443)
T ss_dssp E-TT------------------SS-----------EEEEE----SSSEEEE--------------------ETTEEEEE-
T ss_pred cccceEEcC-------------Cc----------ccceEEc---CcEEEEE--------------------CCCCEEEEE
Confidence 221111110 00 0011111 2222211 112344444
Q ss_pred eeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccCC------------ceE
Q 005459 419 VIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQK------------KWR 486 (696)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~sg------------~w~ 486 (696)
..++.. ..... -.+|+.+.||++|.++|..+++...+++.+.. ...
T Consensus 133 w~~~~~--------------------i~~i~--v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~ 190 (443)
T PF04053_consen 133 WETGKL--------------------IRRID--VSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFE 190 (443)
T ss_dssp TTT--E--------------------EEEES--S-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEE
T ss_pred hhHcce--------------------eeEEe--cCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceE
Confidence 333321 11111 11489999999999999999988777665443 222
Q ss_pred ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEeecCCccEEEEccC--CEEEEEEcCce
Q 005459 487 VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYE--DYILVTYRPFD 564 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~--~~llv~~~d~~ 564 (696)
. .+|-...|..-+|.++.++-. +.. +|+.+... . ......++.+.-.+...+ +.+.....++.
T Consensus 191 ~----~~E~~~~IkSg~W~~d~fiYt-----T~~-~lkYl~~G---e--~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 191 L----IHEISERIKSGCWVEDCFIYT-----TSN-HLKYLVNG---E--TGIIAHLDKPLYLLGYLPKENRLYLIDRDGN 255 (443)
T ss_dssp E----EEEE-S--SEEEEETTEEEEE------TT-EEEEEETT---E--EEEEEE-SS--EEEEEETTTTEEEEE-TT--
T ss_pred E----EEEecceeEEEEEEcCEEEEE-----cCC-eEEEEEcC---C--cceEEEcCCceEEEEEEccCCEEEEEECCCC
Confidence 2 133234477899999965543 222 67665432 2 222222444334444433 66665555555
Q ss_pred EEEEEEE
Q 005459 565 VHIFHVK 571 (696)
Q Consensus 565 ~~l~~~~ 571 (696)
+..|.+.
T Consensus 256 v~~~~ld 262 (443)
T PF04053_consen 256 VISYELD 262 (443)
T ss_dssp EEEEE--
T ss_pred EEEEEEC
Confidence 5555443
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.29 E-value=0.14 Score=59.77 Aligned_cols=304 Identities=13% Similarity=0.097 Sum_probs=148.4
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
...+.+.|..+..-|.++..+|.|.+-|..+ . .+..... -.+.|.+++||||++.++-...++++-+-+-
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et-~-~~eivg~--------vd~GI~aaswS~Dee~l~liT~~~tll~mT~ 138 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPET-L-ELEIVGN--------VDNGISAASWSPDEELLALITGRQTLLFMTK 138 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccc-c-ceeeeee--------ccCceEEEeecCCCcEEEEEeCCcEEEEEec
Confidence 3455588999999999999999999987665 2 2222222 4567999999999999999888777755432
Q ss_pred cCCeeE--EEeec--ccccceecccccCCCCCCccceecce--eeEEEcCCCceEE-E--EecCCcceEEEEec-ceeee
Q 005459 337 SGCRLM--STIRQ--ISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLY-A--IEEGSSERVLIFSF-GKCCL 406 (696)
Q Consensus 337 ~~~~~~--~~l~~--~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~-~--~~~~~~~~v~~~~~-~~~~~ 406 (696)
.-.++ ..+.. ...+.+-.+.|-.. +.-..|+ ..+.-.....+-. . ....|...| .+.- ++..+
T Consensus 139 -~f~~i~E~~L~~d~~~~sk~v~VGwGrk-----eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I-sWRgDg~~fA 211 (1265)
T KOG1920|consen 139 -DFEPIAEKPLDADDERKSKFVNVGWGRK-----ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI-SWRGDGEYFA 211 (1265)
T ss_pred -cccchhccccccccccccccceeccccc-----ceeeecchhhhcccccccccccccchhhccCCceE-EEccCCcEEE
Confidence 11111 01100 00000000111000 0000000 0000000000000 0 000011111 1111 22222
Q ss_pred e----ccCC-CCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeC---CccE-E
Q 005459 407 N----RGVS-GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGL---HGLI-L 477 (696)
Q Consensus 407 s----~~~d-~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~---dG~i-~ 477 (696)
. ...+ ..+++|+-. |.- +....|..+..| +++|-|.|..+|+-.. |+.| +
T Consensus 212 Vs~~~~~~~~RkirV~drE-g~L---------------ns~se~~~~l~~-----~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 212 VSFVESETGTRKIRVYDRE-GAL---------------NSTSEPVEGLQH-----SLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred EEEEeccCCceeEEEeccc-chh---------------hcccCccccccc-----ceeecCCCCeEeeeeecCCCCcEEE
Confidence 1 1222 566777643 111 111124455544 6899999999998754 4556 8
Q ss_pred EEccCCceEecCCccceeeeEEEeEeee--CcEEEEEEeecCCCeEEEEEeeCCCCCccceeE-EeecCCc-cEEEEcc-
Q 005459 478 YDIRQKKWRVFGDITQEQKIQSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLC-RKSLLAK-PIVMDVY- 552 (696)
Q Consensus 478 w~~~sg~w~~f~~~~~e~~~~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~-~~~~~~~-~l~~~~~- 552 (696)
|..+.-+...|.-...+++..|.+++|. .++|++- ........|++|-..+. ...+. ....+.. ++--+|.
T Consensus 271 fErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~--~~~~e~~~v~lwt~~Ny--hWYLKq~l~~~~~~~~~W~p~~ 346 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVV--TSNLENSLVQLWTTGNY--HWYLKQELQFSQKALLMWDPVT 346 (1265)
T ss_pred EecCCccccccccCCcccccchheeeecCCCCceeee--ecccccceEEEEEecCe--EEEEEEEEeccccccccccCCC
Confidence 8877655554544444454458899997 4455542 22233355999976521 11222 2233331 2333454
Q ss_pred CCEEEEEEcCceEEEEEEEEecccCCCC---CCeeEeE--EEEEEeecccCCCCce
Q 005459 553 EDYILVTYRPFDVHIFHVKLFGELTPST---TPDLQLS--TVRELSIMTAKSHPAA 603 (696)
Q Consensus 553 ~~~llv~~~d~~~~l~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~p~~ 603 (696)
...|.+.+.++...+|++.-..+.+|.. ..+|.-. .+..++ ..+++.|.|
T Consensus 347 ~~~L~v~~~sG~~~v~~~~~~t~~s~~d~S~~~VIDgs~llvT~ls-~~vvPPPM~ 401 (1265)
T KOG1920|consen 347 EKTLHVLRESGQRLVRDFAWTTDRSPNDGSTVYVIDGSRLLVTPLS-LAVVPPPMC 401 (1265)
T ss_pred ceeEEEEecCCcEEEEEEEEeeeccCCCCceEEEEeCCEEEEecch-hhcCCCCce
Confidence 4456666678888888887544432221 1222222 222333 346777877
No 313
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0039 Score=65.74 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=111.1
Q ss_pred cccceeEEEeee-CC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCC
Q 005459 129 AEKGLSVSNIVS-DN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFP 206 (696)
Q Consensus 129 ~~~~~~v~~~~~-~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 206 (696)
.++...|.++.. ++ +.++.+++|.+++.|+...+...... . ....+...
T Consensus 732 ~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t-----------s------------------aCQfTY~a 782 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT-----------S------------------ACQFTYQA 782 (1034)
T ss_pred cCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc-----------c------------------eeeeEhhh
Confidence 344555555532 33 56888999999999776554332110 0 00012234
Q ss_pred CcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee------cCCCCe--EEEEEcCCCcEEEEE-ecC
Q 005459 207 ISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE------LGSGDA--VCASIAPEQQILAVG-TRR 277 (696)
Q Consensus 207 ~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~--v~v~~sp~~~~la~g-~~d 277 (696)
|+..|.++. |..|-+.++ +-|+.+.+||...+..+ ..|... +.+-=|-+..++..| +..
T Consensus 783 Hkk~i~~ig----------fL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsae 850 (1034)
T KOG4190|consen 783 HKKPIHDIG----------FLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAE 850 (1034)
T ss_pred ccCccccee----------eeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccch
Confidence 555666655 566766666 56888999997655433 122222 223234345555444 778
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.+|+++|.+. .+....++.... ++..+-+++++..|.|+.+|+|-.+|.+.+-|..+|+.+.+.+
T Consensus 851 STVKl~DaRs-ce~~~E~kVcna---~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 851 STVKLFDARS-CEWTCELKVCNA---PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred hhheeeeccc-ccceeeEEeccC---CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 9999999987 676666665221 1234669999999999999999999999999999998776544
No 314
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.35 Score=52.45 Aligned_cols=68 Identities=19% Similarity=0.395 Sum_probs=47.1
Q ss_pred EEEcCCCcEEEEEecC-----------CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCc
Q 005459 262 ASIAPEQQILAVGTRR-----------GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 262 v~~sp~~~~la~g~~d-----------g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~ 330 (696)
++.+|.|..||....+ ..|++|+.. +.++..+.- ..+.+.++.|+.+.+ |+.-..||.
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s--G~ll~~i~w--------~~~~iv~~~wt~~e~-LvvV~~dG~ 102 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS--GKLLSSIPW--------DSGRIVGMGWTDDEE-LVVVQSDGT 102 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC--CCEeEEEEE--------CCCCEEEEEECCCCe-EEEEEcCCE
Confidence 4445555555554333 158899865 566666665 338999999998655 555568899
Q ss_pred EEEEEccCCe
Q 005459 331 LTVWSVSGCR 340 (696)
Q Consensus 331 v~vW~~~~~~ 340 (696)
++++|+.|..
T Consensus 103 v~vy~~~G~~ 112 (410)
T PF04841_consen 103 VRVYDLFGEF 112 (410)
T ss_pred EEEEeCCCce
Confidence 9999998765
No 315
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.12 E-value=0.15 Score=55.25 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=44.0
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
+..+.+++.+|.+..+|.++ ++.+-.... .+.+.+ +| .+..+..+..++.+.-.|..+++.+...
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-G~~~W~~~~---------~~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-GEVAWQTKV---------AGEALS---RPVVSDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-CCCcccccC---------CCceec---CCEEECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 55677788999999999887 554433332 111111 12 2345666777899999999999888776
Q ss_pred ec
Q 005459 346 RQ 347 (696)
Q Consensus 346 ~~ 347 (696)
..
T Consensus 187 ~~ 188 (394)
T PRK11138 187 NL 188 (394)
T ss_pred cC
Confidence 53
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.08 E-value=0.25 Score=52.59 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=48.0
Q ss_pred CCceEEEEEeCCcEEEEEccCeEEEeecCCceeeEEEeecChHH----------H-hh-cccccEEEEcCCCcEEEEEec
Q 005459 20 SSQQIIYFKVNNGLLLIASPCHIELWSSSQHKVRLGKYKRDSES----------V-QR-EGENLQAVWSPDTKLIAVVTS 87 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~s----------l-~~-~G~~~~v~wsPDg~~lav~t~ 87 (696)
.......+||||+.+|.+.++.|.+++.. .+ ....+...-+. . ++ .+....+.|||||++||....
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~~nly~~~~~-~~-~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRDNNLYLRDLA-TG-QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEETTEEEEESST-TS-EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeecCCCeeEEEecCceEEEECC-CC-CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 35666889999999999999999999874 32 22222221100 1 12 455678999999999998654
Q ss_pred C-cEEEEEEEE
Q 005459 88 S-LYLHIFKVQ 97 (696)
Q Consensus 88 d-g~l~l~~l~ 97 (696)
| ..++.+.+.
T Consensus 121 d~~~v~~~~~~ 131 (353)
T PF00930_consen 121 DEREVPEYPLP 131 (353)
T ss_dssp E-TTS-EEEEE
T ss_pred CCcCCceEEee
Confidence 4 446666654
No 317
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0024 Score=68.88 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=71.3
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeE-EEEEcCCCcEEEEEecCCeEEEEEccCC
Q 005459 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAV-CASIAPEQQILAVGTRRGVVELYDLAES 288 (696)
Q Consensus 210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v-~v~~sp~~~~la~g~~dg~v~vw~~~~~ 288 (696)
.|.-++|+|.+..++..+.+|.+++...+ --|+|+...+ + .+.+ +++|.|||++||+|-.||+|++-|+.+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n--~qRlwtip~p----~-~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~- 93 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN--WQRLWTIPIP----G-ENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK- 93 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec--cceeEeccCC----C-CccceeeeecCCCCEEEEEecCCeEEEEEccC-
Confidence 47788999999999999999999887766 5678887644 2 2344 699999999999999999999999998
Q ss_pred CceeeEEeeccCCCCCCCCCCeEEEEECC
Q 005459 289 ASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (696)
Q Consensus 289 ~~~~~~~~~~~~~~~~~h~g~V~~l~~sp 317 (696)
+..+..... + -..+|.++-|+|
T Consensus 94 ~~~l~~~~~-----s--~e~~is~~~w~~ 115 (665)
T KOG4640|consen 94 GGRLVSFLF-----S--VETDISKGIWDR 115 (665)
T ss_pred CCceecccc-----c--cccchheeeccc
Confidence 443332111 0 345688888874
No 318
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.07 E-value=0.0016 Score=43.02 Aligned_cols=30 Identities=30% Similarity=0.691 Sum_probs=28.7
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEE
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWS 335 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~ 335 (696)
|...|.+++|+|++..+++++.|+.+++|+
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 889999999999999999999999999996
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.0015 Score=65.34 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=81.8
Q ss_pred EEEeCCcEEEEeeccCCceeeeeeec---cee----cCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEccCCCce---e
Q 005459 225 VLYSNGQLMSCSVSKKGLKLAEFIKI---DKE----LGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDLAESASL---I 292 (696)
Q Consensus 225 ~~s~dG~~~~~~~~d~~~~~~~~~~~---~~~----~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~~~~~~~---~ 292 (696)
.|...+.+++.+...+.|...|+... ..| ..|..+++ +..-. +++.|.+.+.+|+|++||.+. .+. +
T Consensus 259 Qf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~-~K~~~~V 337 (425)
T KOG2695|consen 259 QFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA-TKCKKSV 337 (425)
T ss_pred HhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh-hhcccce
Confidence 35556778888888888888887643 112 34777777 65555 677888888999999999987 555 5
Q ss_pred eEEeeccCCCCCCCCCCeEEE--EECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 293 RTVSLYDWGYSMDDTGPVSCI--AWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 293 ~~~~~~~~~~~~~h~g~V~~l--~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
.+..+ |...-.-+ -..+....+++++.|.-.|+|++..+.++++++-
T Consensus 338 ~qYeG--------HvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 338 MQYEG--------HVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred eeeec--------ccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 55555 53322222 2234556788899999999999999999999875
No 320
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0019 Score=66.78 Aligned_cols=212 Identities=12% Similarity=0.147 Sum_probs=127.7
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEEccC-C-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc-CCcEE
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAE-S-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK-SRGLT 332 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~-~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~-Dg~v~ 332 (696)
|.+.+.-.+-...+++.+++-||.++.|.-.. . .+.+..+.. |.+.|.+++-|-||..++|... |+.++
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFra--------HL~~I~sl~~S~dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRA--------HLGVILSLAVSYDGWLFRSVEDPDHSVK 79 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHH--------HHHHHHhhhccccceeEeeccCccccee
Confidence 55666633445678899999999999998543 1 133444555 8999999999999999999888 99999
Q ss_pred EEEccCCeeEEEeecccccceecccccCCCCCCccceec----ceeeEEEcCCCc--eEEEEecCCcceEEEEec---ce
Q 005459 333 VWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMS----GTSMMQWDEYGY--RLYAIEEGSSERVLIFSF---GK 403 (696)
Q Consensus 333 vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~s----g~~~~~W~~~~~--~l~~~~~~~~~~v~~~~~---~~ 403 (696)
++|+..-..+.-++-.-....-.+..+|... -..++- ...+.+.|..+. +....-.-|..+|..+.. ++
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~--~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDK--ISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCe--eeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc
Confidence 9999776544322211000000011111110 001110 014455555432 333333447777744433 88
Q ss_pred eeeeccCCCCceeeeeee----cCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccE-EE
Q 005459 404 CCLNRGVSGMTYARQVIY----GEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LY 478 (696)
Q Consensus 404 ~~~s~~~d~~~~~w~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w 478 (696)
+++|....|.+..|.... .+.++...-.+++. .-.+........++.|||+|..+++-+.|..+ ++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTd---------Ly~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETD---------LYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccch---------hhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 889988899999998542 11111111110000 00111223346789999999999999999999 99
Q ss_pred EccCCceE
Q 005459 479 DIRQKKWR 486 (696)
Q Consensus 479 ~~~sg~w~ 486 (696)
...+|+..
T Consensus 229 ~~KtGklv 236 (558)
T KOG0882|consen 229 VFKTGKLV 236 (558)
T ss_pred Eeccchhh
Confidence 99999754
No 321
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.91 E-value=0.088 Score=56.05 Aligned_cols=265 Identities=16% Similarity=0.142 Sum_probs=120.5
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~ 356 (696)
.+.+.+||+.+ ++ +..+.. ..+.+....|||||+.+|-... +.|.+++..++. ...|...|...+..-
T Consensus 22 ~~~y~i~d~~~-~~-~~~l~~--------~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~-~~~lT~dg~~~i~nG 89 (353)
T PF00930_consen 22 KGDYYIYDIET-GE-ITPLTP--------PPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQ-ETQLTTDGEPGIYNG 89 (353)
T ss_dssp EEEEEEEETTT-TE-EEESS---------EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSE-EEESES--TTTEEES
T ss_pred ceeEEEEecCC-Cc-eEECcC--------CccccccceeecCCCeeEEEec-CceEEEECCCCC-eEEeccccceeEEcC
Confidence 36788999887 33 332332 2467899999999999998865 889999987774 333333222211100
Q ss_pred cccCCCCCCccceecceeeEEEcCCCceEEEEecC-CcceEEEEe-c--c----------eeeeeccCCCCceeeeeeec
Q 005459 357 IVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEG-SSERVLIFS-F--G----------KCCLNRGVSGMTYARQVIYG 422 (696)
Q Consensus 357 ~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~-~~~~v~~~~-~--~----------~~~~s~~~d~~~~~w~~~~~ 422 (696)
. |+= --.+.++.....+-|++++..+...... ..-+.+.+. + . +.-..|.....+.++.+.-.
T Consensus 90 ~--~dw-vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 90 V--PDW-VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp B----H-HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred c--cce-eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 0 000 0001112223567788877766554322 111111111 1 1 11223444444444333222
Q ss_pred CCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEE--EEeCCc---cE-EEEccCCceEecCCccceee
Q 005459 423 EDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLA--VAGLHG---LI-LYDIRQKKWRVFGDITQEQK 496 (696)
Q Consensus 423 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la--~ag~dG---~i-~w~~~sg~w~~f~~~~~e~~ 496 (696)
+.+. ..+..|........-+..+.|++|++.|+ ...++. .+ ++|..+++-++...+..+.=
T Consensus 167 ~~~~-------------~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 167 SGKT-------------TELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp STCC-------------CEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred CCcE-------------EEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 2210 01122222223344588899999999433 344443 23 77887776554332222221
Q ss_pred eEEE-eEeee---CcEEEEEEeecCCCeEEEEEeeCC-CCCccceeE-EeecCCccEEEEccCCEEEEEEc---CceEEE
Q 005459 497 IQSK-GLLWL---GKIIVVCNYIDSSNTYELLFYPRY-HLDQSSLLC-RKSLLAKPIVMDVYEDYILVTYR---PFDVHI 567 (696)
Q Consensus 497 ~~v~-~~~w~---~~~lv~~~~~~~~~~~~lr~y~~~-~l~~~~~~~-~~~~~~~~l~~~~~~~~llv~~~---d~~~~l 567 (696)
+... .+.+. ++.++.. .+.++-.+|-+++.+ .... .+-. ...+. .++.++..++.+..... ...-.|
T Consensus 234 v~~~~~~~~~~~~~~~~l~~--s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~-~i~~~d~~~~~iyf~a~~~~p~~r~l 309 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWI--SERDGYRHLYLYDLDGGKPR-QLTSGDWEVT-SILGWDEDNNRIYFTANGDNPGERHL 309 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEE--EETTSSEEEEEEETTSSEEE-ESS-SSS-EE-EEEEEECTSSEEEEEESSGGTTSBEE
T ss_pred eeeecccccccCCCCEEEEE--EEcCCCcEEEEEccccccee-ccccCceeec-ccceEcCCCCEEEEEecCCCCCceEE
Confidence 2122 33333 3444443 234556778888775 1100 0000 01111 13555666665554222 235677
Q ss_pred EEEEEe
Q 005459 568 FHVKLF 573 (696)
Q Consensus 568 ~~~~~~ 573 (696)
|.+.++
T Consensus 310 Y~v~~~ 315 (353)
T PF00930_consen 310 YRVSLD 315 (353)
T ss_dssp EEEETT
T ss_pred EEEEeC
Confidence 777654
No 322
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.87 E-value=0.25 Score=53.50 Aligned_cols=75 Identities=12% Similarity=0.031 Sum_probs=41.1
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
..+.++..+|.+...|..+ ++..-....... ...........+.-+| .+..+..++.+|.+...|..+++.+...
T Consensus 206 ~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~-~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQP-TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEcCCCEEEEEEccC-ChhhheeccccC-CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 3566778889998888877 543322221000 0000000111122233 3445666777899999999988766554
No 323
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.82 E-value=0.31 Score=49.57 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=37.9
Q ss_pred EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
|++++++.++|+.| ..|.+.+||..+ ++.+..... ..+..++-.+++ +++|.+.
T Consensus 222 Ia~~~~g~~ia~tsPrGg~~~~~d~~t-g~~~~~~~l----------~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 222 IAADRDGRLIAVTSPRGGRVAVWDAAT-GRLLGSVPL----------PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred EEEeCCCCEEEEECCCCCEEEEEECCC-CCEeecccc----------CceeeeeecCCc-eEEeCCC
Confidence 99999999887666 467899999888 776654444 235666666676 4554443
No 324
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.77 E-value=0.033 Score=47.30 Aligned_cols=94 Identities=16% Similarity=0.243 Sum_probs=59.6
Q ss_pred EEeCCc-EEEEeeccCCceeeeeeecc-eecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 226 LYSNGQ-LMSCSVSKKGLKLAEFIKID-KELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 226 ~s~dG~-~~~~~~~d~~~~~~~~~~~~-~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
+..||+ .+++++.|+.|++++..... ....+...+.+.-... ..+|.|.++|+|-+|+-.. +..+ .+.
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWR-iKS------ 79 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWR-IKS------ 79 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeee-ecc------
Confidence 344554 78888999999998754321 1133344555443333 6799999999999998532 3333 222
Q ss_pred CCCCCCeEEEEECC---CCC-eEEEEEcCCcEE
Q 005459 304 MDDTGPVSCIAWTP---DNS-AFAVGWKSRGLT 332 (696)
Q Consensus 304 ~~h~g~V~~l~~sp---dg~-~lasg~~Dg~v~ 332 (696)
+..+.++++.. ||. -|++||.+|.|-
T Consensus 80 ---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 80 ---KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 23366666544 343 799999999874
No 325
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.76 E-value=0.72 Score=46.16 Aligned_cols=128 Identities=10% Similarity=0.083 Sum_probs=71.6
Q ss_pred EEe-CCcEEEEeeccCCceeeeeeeccee-cCCCCeEEEEEc-CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 226 LYS-NGQLMSCSVSKKGLKLAEFIKIDKE-LGSGDAVCASIA-PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 226 ~s~-dG~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~v~v~~s-p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
+.+ +|+++++....+.+..++....+.. .....+.-+++. ++++++++ ..++ +.++|..+ ++.........
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~-~~~~-~~~~d~~~-g~~~~~~~~~~--- 80 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVA-DSGG-IAVVDPDT-GKVTVLADLPD--- 80 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEE-ETTC-EEEEETTT-TEEEEEEEEET---
T ss_pred EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEE-EcCc-eEEEecCC-CcEEEEeeccC---
Confidence 444 6777777667777777776554332 111235558888 67655554 4444 45558776 43333222210
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcC--------CcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKS--------RGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~D--------g~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
........+++++.|||+..++.... |.+..++.. ++......+ ....+.++|+|++
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg 145 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDG 145 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTS
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcc
Confidence 00023468899999999977776543 446666666 343322222 3346778888887
No 326
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.68 E-value=0.01 Score=65.87 Aligned_cols=104 Identities=20% Similarity=0.316 Sum_probs=78.3
Q ss_pred EEEcCCCcEEEEEe----cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 262 ASIAPEQQILAVGT----RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 262 v~~sp~~~~la~g~----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.+|+|...++|+++ ..|.|.+|- ++ +++-+-.. ..-.+++++|.|.--.||+||+-|.+.+|...
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dt-GEPqr~Vt---------~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DT-GEPQRDVT---------YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cC-CCCCcccc---------cceehhhhccChHHHHHhhccccceeEEEecC
Confidence 78999999999887 468888884 44 44322111 12235779999999999999999999999987
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEY 381 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~ 381 (696)
+.+ .++...-|...+..+.|||+| ..++++. .+..|..+
T Consensus 90 ~~e-~htv~~th~a~i~~l~wS~~G----~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 90 TTE-THTVVETHPAPIQGLDWSHDG----TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred Cce-eeeeccCCCCCceeEEecCCC----CeEEEcCCCceeEEEEee
Confidence 765 455555447889999999999 8888776 67778654
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.59 E-value=0.12 Score=51.29 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
+++..+.+++.++.+..||..+ ++.+-..... +++.... ..++..++++..|+.+..+|..+++.+.+.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~~---------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-GKVLWRFDLP---------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-SEEEEEEECS---------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCC-CCEEEEeecc---------cccccee-eecccccccccceeeeEecccCCcceeeee
Confidence 3556666778999999999988 6665545431 1111101 225566777778889999999999888874
Q ss_pred -ecccc--cceecccccCCCCCCccceecc--eeeEEEcCCCceEEEEecC
Q 005459 346 -RQISL--SSISSPIVKPNQDCKYEPLMSG--TSMMQWDEYGYRLYAIEEG 391 (696)
Q Consensus 346 -~~~~~--~~v~~~~~sp~~~~~~~~l~sg--~~~~~W~~~~~~l~~~~~~ 391 (696)
..... ...........+ ...++.. ..+...++++++++.....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVDG---DRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EE-SSCTCSTB--SEEEEET---TEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccccccccccCceEec---CEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 32200 000111111112 0222222 2778888888877665543
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.51 E-value=0.035 Score=62.57 Aligned_cols=175 Identities=17% Similarity=0.115 Sum_probs=115.3
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
+...+..|+--..+..+|+++ .+..+.... ..+.|.-|+. +++.|++|...|+|.+=|..+.+.++++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~-~~e~r~~~v--------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNT-EKETRTTNV--------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeeccc-ceeeeeeec--------cCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeee
Confidence 344566666666777888876 555555554 3445777764 67899999999999999999999999999
Q ss_pred cccccceecccccCCCCCCccceecce------------eeEEEcCCCceEEEEecCCcc-eEEEEec--ceeeeeccCC
Q 005459 347 QISLSSISSPIVKPNQDCKYEPLMSGT------------SMMQWDEYGYRLYAIEEGSSE-RVLIFSF--GKCCLNRGVS 411 (696)
Q Consensus 347 ~~~~~~v~~~~~sp~~~~~~~~l~sg~------------~~~~W~~~~~~l~~~~~~~~~-~v~~~~~--~~~~~s~~~d 411 (696)
.| ++.++.... .| +.+++.+ -+++||++..+.+.-..-+.+ .++.|.| ...++..+..
T Consensus 215 aH-s~siSDfDv--~G----NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~s 287 (1118)
T KOG1275|consen 215 AH-SGSISDFDV--QG----NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQS 287 (1118)
T ss_pred cc-ccceeeeec--cC----CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecc
Confidence 88 666665433 33 4444433 356788877665544332222 3456666 4555556666
Q ss_pred CCceeeeeeecCCeEEEEecCCCCcceeEEeecCe---eeecCCCc-eEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459 412 GMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV---SYISQNWP-VQHVAASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 412 ~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~~~~-I~~va~s~dG~~la~ag~dG~i-~w~ 479 (696)
|..++-+...-.. |. .+..-+.+ |....+|++|..+|.|-.+|.+ +|.
T Consensus 288 Gq~q~vd~~~lsN--------------------P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 288 GQFQFVDTATLSN--------------------PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeeccccccCC--------------------CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 6666544222222 11 11122333 8999999999999999999999 997
No 329
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.50 E-value=0.023 Score=61.42 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=54.5
Q ss_pred CceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459 21 SQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (696)
Q Consensus 21 ~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~ 99 (696)
.....++||+.+.|+.+ .|++|.+||.. .++ ....+.. =-...++|+|||.++++++..|.|.+||+..+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~-~~~--t~~~ka~------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTT-RGV--TLLAKAE------FIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcC-CCe--eeeeeec------ccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 45557789998777666 78999999986 332 2222221 11358999999999999999999999999876
Q ss_pred Ccc
Q 005459 100 EKS 102 (696)
Q Consensus 100 ~~~ 102 (696)
..+
T Consensus 332 pi~ 334 (545)
T PF11768_consen 332 PIK 334 (545)
T ss_pred ccc
Confidence 643
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.50 E-value=0.075 Score=57.55 Aligned_cols=110 Identities=14% Similarity=0.160 Sum_probs=62.8
Q ss_pred EEEeCCcEEEEE---cc--CeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEe-cCcEEEEEEEEec
Q 005459 26 YFKVNNGLLLIA---SP--CHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVT-SSLYLHIFKVQIT 99 (696)
Q Consensus 26 ~fs~dg~lla~~---~~--~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t-~dg~l~l~~l~~~ 99 (696)
.++|+++.++-. .. ..+.+++.+..... ..+...|.+..-.|||||+.||... .+|...||-++..
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~--------~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP--------VILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccc--------eeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 478888866544 22 35888888632211 1122357778899999999888754 5676666655433
Q ss_pred CcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCC---cEEEEecCCcc
Q 005459 100 EKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDG---SLYSISWKGEF 163 (696)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g---~i~~~~w~~~~ 163 (696)
.....- + ... .+.+ .--++++||+.|+..++.+ .|.++++++..
T Consensus 271 ~~~~~~---------L-------t~~---~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~ 317 (425)
T COG0823 271 GKNLPR---------L-------TNG---FGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ 317 (425)
T ss_pred CCccee---------c-------ccC---Cccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCc
Confidence 321100 0 000 0000 1235778899888877654 56666666544
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.47 E-value=0.23 Score=55.97 Aligned_cols=121 Identities=11% Similarity=0.177 Sum_probs=72.9
Q ss_pred cEEEEEEccCcceEEEEEeCCcEEEEeec---cCCceeeeeeecceecCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEc
Q 005459 210 AIIWLELCLPMRLLFVLYSNGQLMSCSVS---KKGLKLAEFIKIDKELGSGDAVC-ASIAPEQQILAVGTRRGVVELYDL 285 (696)
Q Consensus 210 ~i~~~~~~~~~~~~~~~s~dG~~~~~~~~---d~~~~~~~~~~~~~~~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~ 285 (696)
++..+..+......++.+.+|.++..-++ |...++-... .+ ..+++ +++..+++.+.....-..|.+|.+
T Consensus 127 p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-----~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l 200 (933)
T KOG2114|consen 127 PASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-----RG-KEPITGLALRSDGKSVLFVATTEQVMLYSL 200 (933)
T ss_pred cceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-----cC-CCCceeeEEecCCceeEEEEecceeEEEEe
Confidence 34444444445555555666655554331 1111111111 22 45666 999999888555555678999999
Q ss_pred cCCCce-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 286 AESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 286 ~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.. ..+ ..++.. |..+++|-+|++-...+++|+. ..+.+++..+...-.++.
T Consensus 201 ~g-r~p~~~~ld~--------~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 201 SG-RTPSLKVLDN--------NGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred cC-CCcceeeecc--------CCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence 85 332 233444 7788999999986664555554 589999988766555555
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.31 E-value=0.89 Score=48.84 Aligned_cols=236 Identities=14% Similarity=0.079 Sum_probs=111.1
Q ss_pred ccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc---ccCC---------CCCCCceeeee--------eEEEeeecccc
Q 005459 70 NLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI---QIGG---------KQPSGLFFIKI--------SLVLNEQLPFA 129 (696)
Q Consensus 70 ~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~---~~~~---------~~~~~~~~~~~--------~l~~~~~~~~~ 129 (696)
+..+.|+++..-||+++..|.+.||+....+... .... ++.....+.++ +-.+.-...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 5689999999999999999999999987654221 0000 00001112211 11111112234
Q ss_pred ccceeEEEeeeCC-CeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCc
Q 005459 130 EKGLSVSNIVSDN-KHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPIS 208 (696)
Q Consensus 130 ~~~~~v~~~~~~~-~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 208 (696)
...+.|+++...+ ..+++|..+|.+.+++..+....-.. + ++. ........
T Consensus 84 ~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~-~--------i~~-------------------~~~~~~~~ 135 (395)
T PF08596_consen 84 AKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNE-N--------IRE-------------------SFLSKSSS 135 (395)
T ss_dssp --S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEE-E--------GGG---------------------T-SS--
T ss_pred ccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeec-c--------ccc-------------------cccccccc
Confidence 4567888887644 78899999999999987654322110 0 110 00011223
Q ss_pred ccEEEEEEcc-----Cc---ceEEEEEeCCcEEEEeec-----cCCceeeeeeecceecCCCCeEE--EEEcCC------
Q 005459 209 SAIIWLELCL-----PM---RLLFVLYSNGQLMSCSVS-----KKGLKLAEFIKIDKELGSGDAVC--ASIAPE------ 267 (696)
Q Consensus 209 ~~i~~~~~~~-----~~---~~~~~~s~dG~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~~v~--v~~sp~------ 267 (696)
.+++.++|.. +. ..+++.+..|++++..-. ..++...+.. ..+.+.+. ..|+.+
T Consensus 136 ~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-----~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 136 SYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-----TNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp --EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE-------SS----EEEEEETTT--B-B
T ss_pred cCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-----ccCCCceEEEEEEECCCCCccc
Confidence 4455565542 11 234445556655443211 1111111111 12222222 233322
Q ss_pred --------------CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEE-----CCCCCeEEEEEcC
Q 005459 268 --------------QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAW-----TPDNSAFAVGWKS 328 (696)
Q Consensus 268 --------------~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~-----spdg~~lasg~~D 328 (696)
-.-+++.+.+..+|++...+ .+..+.... ..-....+.+ ...+..|++-..|
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~-~k~~~K~~~--------~~~~~~~~~vv~~~~~~~~~~Lv~l~~~ 281 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK-SKGAHKSFD--------DPFLCSSASVVPTISRNGGYCLVCLFNN 281 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT----EEEEE-S--------S-EEEEEEEEEEEE-EEEEEEEEEEETT
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCC-Ccccceeec--------cccccceEEEEeecccCCceEEEEEECC
Confidence 01245556678899998876 443332222 2223344455 3467889999999
Q ss_pred CcEEEEEccCCeeEEEeec
Q 005459 329 RGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 329 g~v~vW~~~~~~~~~~l~~ 347 (696)
|.++++++.+-+.+..++-
T Consensus 282 G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 282 GSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp SEEEEEETTT--EEEEEE-
T ss_pred CcEEEEECCCchHhhcccC
Confidence 9999999998877766553
No 333
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.24 E-value=3.3 Score=47.94 Aligned_cols=53 Identities=8% Similarity=0.078 Sum_probs=38.7
Q ss_pred EEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459 521 YELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (696)
Q Consensus 521 ~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~ 574 (696)
+.|-+|.-+.+.+-.+.+.+.+.+.|+++..+.+.+++ +-+..++||+++.+.
T Consensus 807 GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA-~In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 807 GRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLA-GINQSVRLYEWTTER 859 (1096)
T ss_pred ceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEE-ecCcEEEEEEccccc
Confidence 45666665443333467888899999999998888777 446799999997653
No 334
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.17 E-value=0.0037 Score=69.58 Aligned_cols=179 Identities=13% Similarity=0.112 Sum_probs=111.4
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC--CcEEEEE
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS--RGLTVWS 335 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D--g~v~vW~ 335 (696)
.-+|++|+-+.+.|++|+-.|.|++|++.+ +........ |..+|+-+.=|-||..+.+.+.- --..+|+
T Consensus 1103 ~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~nc--------H~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1103 LFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNC--------HQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred ceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccc--------cccccccccccCCcceeeeeccccCchHHHhc
Confidence 446799999999999999999999999998 666666677 99999999999999977765432 2467898
Q ss_pred ccC-CeeEEEeecccccceecccccCCCCCCccceecce---eeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCC
Q 005459 336 VSG-CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT---SMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVS 411 (696)
Q Consensus 336 ~~~-~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~---~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d 411 (696)
+.. +...+++.+. .++.|+... +.-+-|. ...++|.+++..+.+.-. .....+..+.+++-+++
T Consensus 1174 ~~s~~~~~Hsf~ed-----~~vkFsn~~----q~r~~gt~~d~a~~YDvqT~~~l~tylt---~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDED-----KAVKFSNSL----QFRALGTEADDALLYDVQTCSPLQTYLT---DTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred cccccCcccccccc-----ceeehhhhH----HHHHhcccccceEEEecccCcHHHHhcC---cchhhhhhccccccCCC
Confidence 753 3334455442 234454332 1111122 677888888766554211 22333445556666666
Q ss_pred CCceee-----eeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcCCCCEEEEEeCCccEEEEccC
Q 005459 412 GMTYAR-----QVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASKDGMFLAVAGLHGLILYDIRQ 482 (696)
Q Consensus 412 ~~~~~w-----~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~dG~~la~ag~dG~i~w~~~s 482 (696)
.+..+| |+...+. ...|..-+ ---.-.|.|.|..+++-++ +||++|
T Consensus 1242 D~LIlndGvLWDvR~~~a--------------------Ih~FD~ft-~~~~G~FHP~g~eVIINSE----IwD~RT 1292 (1516)
T KOG1832|consen 1242 DTLILNDGVLWDVRIPEA--------------------IHRFDQFT-DYGGGGFHPSGNEVIINSE----IWDMRT 1292 (1516)
T ss_pred cceEeeCceeeeeccHHH--------------------Hhhhhhhe-ecccccccCCCceEEeech----hhhhHH
Confidence 665544 4332211 11111111 0112368999998887654 899877
No 335
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.15 E-value=1 Score=46.48 Aligned_cols=165 Identities=16% Similarity=0.112 Sum_probs=87.0
Q ss_pred EccCcceEEEEEeCCcEEEEeec-cCCceeeeeeecceecCCCCeEE--EEEcCCCcEEEEEecCCeEEEEEccCCC-ce
Q 005459 216 LCLPMRLLFVLYSNGQLMSCSVS-KKGLKLAEFIKIDKELGSGDAVC--ASIAPEQQILAVGTRRGVVELYDLAESA-SL 291 (696)
Q Consensus 216 ~~~~~~~~~~~s~dG~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~v~--v~~sp~~~~la~g~~dg~v~vw~~~~~~-~~ 291 (696)
|......|..+..||+++-..-. ++.... ..+ +......+++. -++..++..+..-+-+|.|+--++.... +.
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~--~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQ--KST-KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEE--EEE-EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeE--eec-cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc
Confidence 33333456667777777666554 343331 111 11111123332 4555566666667888988887776522 22
Q ss_pred eeEEeec---cCCCCCCCCCCeEEEEECCCCCeEEEEE---c-----CC--cEEEEEccCCeeEEEeecccccceecccc
Q 005459 292 IRTVSLY---DWGYSMDDTGPVSCIAWTPDNSAFAVGW---K-----SR--GLTVWSVSGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 292 ~~~~~~~---~~~~~~~h~g~V~~l~~spdg~~lasg~---~-----Dg--~v~vW~~~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
...+... +....+ ..|.-.-+++++..+.|.+-- . |+ .|.++|+.+++.+..+.-. ..+.+++.
T Consensus 220 ~~~~~~~t~~e~~~~W-rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~V 296 (342)
T PF06433_consen 220 GKPWSLLTDAEKADGW-RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAV 296 (342)
T ss_dssp EEEEESS-HHHHHTTE-EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEE
T ss_pred cCcccccCccccccCc-CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEE
Confidence 2222210 000000 134445577777666555531 1 22 4777789999999888743 24678888
Q ss_pred cCCCCCCccceec---c--eeeEEEcCCCceEEEEec
Q 005459 359 KPNQDCKYEPLMS---G--TSMMQWDEYGYRLYAIEE 390 (696)
Q Consensus 359 sp~~~~~~~~l~s---g--~~~~~W~~~~~~l~~~~~ 390 (696)
+.+. ++++- + ..+.++|+.+++++...+
T Consensus 297 sqd~----~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 297 SQDD----KPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ESSS----S-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ccCC----CcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 8877 54442 2 268889999998887764
No 336
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.10 E-value=0.49 Score=46.85 Aligned_cols=213 Identities=18% Similarity=0.186 Sum_probs=110.4
Q ss_pred EEcCCCcEEEEEec-----CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 263 SIAPEQQILAVGTR-----RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 263 ~~sp~~~~la~g~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.|||||++|-..-. -|.|-|||.+..-+.+.++.. |.-.-..|.|.+||+.|+.+. |+|..---+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t--------~GiGpHev~lm~DGrtlvvan--GGIethpdf 189 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST--------HGIGPHEVTLMADGRTLVVAN--GGIETHPDF 189 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc--------CCcCcceeEEecCCcEEEEeC--Cceeccccc
Confidence 58999998876433 378999999864455666666 655567899999999998764 677666333
Q ss_pred CCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccCCCCceee
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGVSGMTYAR 417 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~d~~~~~w 417 (696)
+...+. |.. . ++ +..+-+..+++++....-. ...-.++. +. +.-+.|+++ |
T Consensus 190 gR~~lN-lds----------M--------eP-----Slvlld~atG~liekh~Lp-~~l~~lSi-RH-ld~g~dgtv--w 240 (366)
T COG3490 190 GRTELN-LDS----------M--------EP-----SLVLLDAATGNLIEKHTLP-ASLRQLSI-RH-LDIGRDGTV--W 240 (366)
T ss_pred Cccccc-hhh----------c--------Cc-----cEEEEeccccchhhhccCc-hhhhhcce-ee-eeeCCCCcE--E
Confidence 332110 000 0 00 1122233344443221100 00000110 00 112334443 2
Q ss_pred eeeecCCeEEEEecCCCCcce--------eEEeecCe-eeecCCCceEEEEEcCCCCEEEEEeCCccE--EEEccCCceE
Q 005459 418 QVIYGEDRLLVVQSEDTDELK--------ILHLNLPV-SYISQNWPVQHVAASKDGMFLAVAGLHGLI--LYDIRQKKWR 486 (696)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~--------w~~~~~~~-~~~~~~~~I~~va~s~dG~~la~ag~dG~i--~w~~~sg~w~ 486 (696)
--.|-. -..+|.+.+. .+.+++|. +...-+.-|-++|...+-.+++..+-.|.. +||..||.-.
T Consensus 241 fgcQy~-----G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv 315 (366)
T COG3490 241 FGCQYR-----GPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV 315 (366)
T ss_pred EEEEee-----CCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence 211100 0111222110 11222232 112223347789999888888888888866 9999999744
Q ss_pred ecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 487 VFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 487 ~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
.- +.--.+.|+.-.++..++. +.+.++++|++.
T Consensus 316 ~~-----a~l~daaGva~~~~gf~vs-----sg~G~~~~~s~~ 348 (366)
T COG3490 316 SE-----AALPDAAGVAAAKGGFAVS-----SGQGRIIFYSRA 348 (366)
T ss_pred ec-----ccccccccceeccCceEEe-----cCCceEEecccc
Confidence 31 1111255666655555444 456889999875
No 337
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.10 E-value=0.041 Score=61.27 Aligned_cols=148 Identities=16% Similarity=0.273 Sum_probs=92.1
Q ss_pred EEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEE
Q 005459 135 VSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWL 214 (696)
Q Consensus 135 v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 214 (696)
++|.+-.++.++.||.+|.++++.-+++....+ .
T Consensus 42 is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~--------------------------------------~-------- 75 (846)
T KOG2066|consen 42 ISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNF--------------------------------------D-------- 75 (846)
T ss_pred HHHHHhhcceeeeccccceEEEEecCCcccccc--------------------------------------c--------
Confidence 445555678899999999999887665431111 0
Q ss_pred EEccCcceEEEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCC-----CcEEEEEecCCeEEEEEcc
Q 005459 215 ELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPE-----QQILAVGTRRGVVELYDLA 286 (696)
Q Consensus 215 ~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~-----~~~la~g~~dg~v~vw~~~ 286 (696)
+++ ..-+|..+++++.||++.+-...+++.. ..-..++. ++++|+ .+.+++|+.-| +.++.-+
T Consensus 76 -~s~-------~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 76 -HSS-------SILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred -ccc-------cccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 000 0234556666666665554444333221 11234455 999998 46789999998 7787644
Q ss_pred CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
- -+........ +-.|+|.++.|. |+++|=+.. -+|+|+|+..++.+..++.
T Consensus 147 w-lgnk~~v~l~------~~eG~I~~i~W~--g~lIAWand-~Gv~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 147 W-LGNKDSVVLS------EGEGPIHSIKWR--GNLIAWAND-DGVKVYDTPTRQRLTNIPP 197 (846)
T ss_pred h-hcCccceeee------cCccceEEEEec--CcEEEEecC-CCcEEEeccccceeeccCC
Confidence 3 2222222221 157999999996 667776665 5899999999887766654
No 338
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.0066 Score=67.72 Aligned_cols=147 Identities=14% Similarity=0.185 Sum_probs=93.0
Q ss_pred CCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-----eeEEEcC
Q 005459 306 DTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-----SMMQWDE 380 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-----~~~~W~~ 380 (696)
|+..-+|++||-+.+.|++|...|.|+++++.+|....+...| .+.++.+.-+.++ ..+.+.+ -..+|+.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH-~SavT~vePs~dg----s~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH-QSAVTLVEPSVDG----STQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-ccccccccccCCc----ceeeeeccccCchHHHhcc
Confidence 8889999999999999999999999999999999877777777 6778888777776 4433332 3456876
Q ss_pred CC-ceEEEEecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeee----cCCCc
Q 005459 381 YG-YRLYAIEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYI----SQNWP 454 (696)
Q Consensus 381 ~~-~~l~~~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~----~~~~~ 454 (696)
.. +.....+.+ +..+.|+- ...-+-|+......++|+.++.. ..+|. +.+..
T Consensus 1175 ~s~~~~~Hsf~e--d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~--------------------l~tylt~~~~~~y~ 1232 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE--DKAVKFSNSLQFRALGTEADDALLYDVQTCSP--------------------LQTYLTDTVTSSYS 1232 (1516)
T ss_pred ccccCccccccc--cceeehhhhHHHHHhcccccceEEEecccCcH--------------------HHHhcCcchhhhhh
Confidence 43 222222221 12222322 11111222223445566655543 22322 23333
Q ss_pred eEEEEEcCCCCEEEEEeCCccEEEEccCC
Q 005459 455 VQHVAASKDGMFLAVAGLHGLILYDIRQK 483 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG~i~w~~~sg 483 (696)
=.++.|||+.+.+. .|| ++||++..
T Consensus 1233 ~n~a~FsP~D~LIl---ndG-vLWDvR~~ 1257 (1516)
T KOG1832|consen 1233 NNLAHFSPCDTLIL---NDG-VLWDVRIP 1257 (1516)
T ss_pred ccccccCCCcceEe---eCc-eeeeeccH
Confidence 47889999999886 333 68998765
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.01 E-value=0.013 Score=38.34 Aligned_cols=34 Identities=41% Similarity=0.524 Sum_probs=30.2
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeCCccE-EEE
Q 005459 446 VSYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYD 479 (696)
Q Consensus 446 ~~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~ 479 (696)
..+..|..+|.+++|+++++++++++.||.+ +|+
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556788899999999999999999999999 885
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=1.7 Score=42.51 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEE-EEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSC-IAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~-l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
-|++++.|+..|.+.+-+.++ ++....+.. -+.|.+ -...+|+..+-.|+.|++...-|..+..++...
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~---------~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-GSQIWNFVI---------LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-hhheeeeee---------hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence 367799999999999999988 666555554 223332 234689999999999999999999998888776
Q ss_pred ecccccceecccccC
Q 005459 346 RQISLSSISSPIVKP 360 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp 360 (696)
+-.| ....++++.|
T Consensus 132 kcgG-~~f~sP~i~~ 145 (354)
T KOG4649|consen 132 KCGG-GTFVSPVIAP 145 (354)
T ss_pred ccCC-ceeccceecC
Confidence 6442 3345555555
No 341
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.00 E-value=0.82 Score=45.22 Aligned_cols=212 Identities=16% Similarity=0.028 Sum_probs=106.5
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecc
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSP 356 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~ 356 (696)
+|+|..||..+ ++.+-...... ...+.+ +. ..+++..+.++..++.+..||..+++.+.+....+. +...
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~-----~~~~~~-~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~ 71 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGP-----GIGGPV-AT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA 71 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSS-----SCSSEE-ET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred CCEEEEEECCC-CCEEEEEECCC-----CCCCcc-ce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence 68899999877 55554443200 012222 11 234667777788999999999999988877664211 1111
Q ss_pred cccCCCCCCccce-ecce-eeEEEcCCCceEEEE-ecCCc--ce---EEEEec-ceeeeeccCCCCceeeeeeecCCeEE
Q 005459 357 IVKPNQDCKYEPL-MSGT-SMMQWDEYGYRLYAI-EEGSS--ER---VLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLL 427 (696)
Q Consensus 357 ~~sp~~~~~~~~l-~sg~-~~~~W~~~~~~l~~~-~~~~~--~~---v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~ 427 (696)
....++ ..+ .+.. .+..++..+++++.. ..... .. .....+ ++.++.+..++.+...++.+|+.
T Consensus 72 ~~~~~~----~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~--- 144 (238)
T PF13360_consen 72 PVVDGG----RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL--- 144 (238)
T ss_dssp EEEETT----EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE---
T ss_pred eeeccc----ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE---
Confidence 111111 222 2222 678888777766555 22211 01 112222 45555555566666655444433
Q ss_pred EEecCCCCcceeEEe-ecCeeeec---CCCceEEEEEcCCCCEEEEEeCCcc-EEEEccCCc--eEecCCccceeeeEEE
Q 005459 428 VVQSEDTDELKILHL-NLPVSYIS---QNWPVQHVAASKDGMFLAVAGLHGL-ILYDIRQKK--WRVFGDITQEQKIQSK 500 (696)
Q Consensus 428 ~~~~~~~~~~~w~~~-~~~~~~~~---~~~~I~~va~s~dG~~la~ag~dG~-i~w~~~sg~--w~~f~~~~~e~~~~v~ 500 (696)
.|+.- ..+. ... ....+..-.+..+| .+.+++.+|. +..|..+++ |+.. ... ..
T Consensus 145 ----------~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-----~~~--~~ 205 (238)
T PF13360_consen 145 ----------LWKYPVGEPR-GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-----ISG--IY 205 (238)
T ss_dssp ----------EEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-----SS---EC
T ss_pred ----------EEEeecCCCC-CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-----CCC--cc
Confidence 23211 1111 000 01123333444456 7777777774 444999997 5321 111 22
Q ss_pred e-EeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 501 G-LLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 501 ~-~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
. +.-.++.++++. .+..|..|++.
T Consensus 206 ~~~~~~~~~l~~~~-----~~~~l~~~d~~ 230 (238)
T PF13360_consen 206 SLPSVDGGTLYVTS-----SDGRLYALDLK 230 (238)
T ss_dssp ECEECCCTEEEEEE-----TTTEEEEEETT
T ss_pred CCceeeCCEEEEEe-----CCCEEEEEECC
Confidence 3 444566666652 23566666654
No 342
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.74 Score=51.03 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=77.5
Q ss_pred CCceEEEEEeCCcEEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
.....-.++..++++|.++ .+.|+++.-. +.. .|..+.--.+|.......|++..++|.+|..|.|-+|.++.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~--~~~----~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRH--TGE----MRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecC--chh----hhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 3444456888899999985 5678877764 222 22211111467778899999999999999999999999875
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe--eeCCCeEEEEecCCcEEEEecCC
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI--VSDNKHMLLGLSDGSLYSISWKG 161 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~--~~~~~~llv~t~~g~i~~~~w~~ 161 (696)
+.+.. +.. ...+. ..+...|+|+ +.++.++++|-+.|.|.....+.
T Consensus 108 ~~p~~---------~~~-----~t~~d---~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELPRD---------LDY-----VTPCD---KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCCc---------cee-----ecccc---ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 32211 000 00111 1123456655 56678999999999998877664
No 343
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.028 Score=64.50 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=59.7
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
.+-.+|.|+..|.|...|+..+ +-+...+. .-+++|++++|+.||+.++.|-.+|-|.+||+..++.++.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne------~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNE------RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCC------ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence 4567999999999999988752 21111221 147899999999999999999999999999999999888887
Q ss_pred cc
Q 005459 347 QI 348 (696)
Q Consensus 347 ~~ 348 (696)
.+
T Consensus 170 e~ 171 (1206)
T KOG2079|consen 170 EH 171 (1206)
T ss_pred ec
Confidence 76
No 344
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.67 E-value=0.0049 Score=66.59 Aligned_cols=204 Identities=17% Similarity=0.236 Sum_probs=115.7
Q ss_pred CeEEEEEcC--CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC-CCCeEEEEEc----CCc
Q 005459 258 DAVCASIAP--EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP-DNSAFAVGWK----SRG 330 (696)
Q Consensus 258 ~~v~v~~sp--~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-dg~~lasg~~----Dg~ 330 (696)
..-|++.+. |..++|+|..+|.|-+-.++..-.. .+.+.++|..+.++++|++ |.+.||+|-. |-.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 344555544 4468999999999999888762211 1122334888999999998 8889998843 557
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecceeeEEEcCCCceEEEEecCCcceEEEEecceeeeeccC
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGTSMMQWDEYGYRLYAIEEGSSERVLIFSFGKCCLNRGV 410 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~~~~~~s~~~ 410 (696)
+.+||..++.. .+...+.|+. + ...|..+..|. .+.+.+++|..
T Consensus 131 ~~Iwdi~s~lt---------vPke~~~fs~-~------~l~gqns~cwl--------------------rd~klvlaGm~ 174 (783)
T KOG1008|consen 131 LKIWDINSLLT---------VPKESPLFSS-S------TLDGQNSVCWL--------------------RDTKLVLAGMT 174 (783)
T ss_pred ccceecccccC---------CCcccccccc-c------cccCccccccc--------------------cCcchhhcccc
Confidence 99999877631 1111111211 0 01111333443 22344556666
Q ss_pred CCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC-CCCEEEEEeCCccE-EEEccCCceEec
Q 005459 411 SGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-DGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 411 d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~-dG~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
...+++.|+.+.-.+. .. -.+..++.+.++| .+.|+++-. ||.| +||..-+--+.|
T Consensus 175 sr~~~ifdlRqs~~~~-------------------~s--vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDSV-------------------SS--VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred cchhhhhhhhhhhhhh-------------------hh--hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 6677777766544321 00 0112356688899 888998877 8888 999522211112
Q ss_pred C-Cccceeee--EEEeEeee--CcEEEEEEeecCCCeEEEEEeeCC
Q 005459 489 G-DITQEQKI--QSKGLLWL--GKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 489 ~-~~~~e~~~--~v~~~~w~--~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
. ...+++.. .+..++|- ...+.+.+. .++..||+|+..
T Consensus 233 ~~i~~~~N~~~~~l~~~aycPtrtglla~l~---RdS~tIrlydi~ 275 (783)
T KOG1008|consen 233 QIILRNENKKPKQLFALAYCPTRTGLLAVLS---RDSITIRLYDIC 275 (783)
T ss_pred HHHhhCCCCcccceeeEEeccCCcchhhhhc---cCcceEEEeccc
Confidence 1 11122211 25567774 334444333 345789999874
No 345
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.18 Score=52.73 Aligned_cols=126 Identities=10% Similarity=-0.011 Sum_probs=85.2
Q ss_pred eEEEEEeCC----cEEEEeeccCCceeeeeeeccee-----cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCc-
Q 005459 222 LLFVLYSNG----QLMSCSVSKKGLKLAEFIKIDKE-----LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESAS- 290 (696)
Q Consensus 222 ~~~~~s~dG----~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~- 290 (696)
.+.++...| .+.+....++.+.+.|.....+- .-|..++. +.++|-+..+.+....|.|.-|..+..-+
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 456677777 33333445666777775432211 23677776 99999999999999999999999873111
Q ss_pred ----eeeEEeec-cCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeec
Q 005459 291 ----LIRTVSLY-DWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 291 ----~~~~~~~~-~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
..-.++.. ++--.+..++...++.|||+|..+++-..|..|+++.+.+++++..+.+
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 11111110 0000112456678999999999999999999999999999998877654
No 346
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.61 E-value=0.32 Score=55.29 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred cCCceeeeeeeccee---cCCCCeEEEEEcCC-CcEEEEEecCCeEEEEEccCCCce-eeEEeeccCCCCCCCCCCeEEE
Q 005459 239 KKGLKLAEFIKIDKE---LGSGDAVCASIAPE-QQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCI 313 (696)
Q Consensus 239 d~~~~~~~~~~~~~~---~~~~~~v~v~~sp~-~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l 313 (696)
|.-+++||++.-+.+ .-+.++..+.|.|. -..+|+.+..|...+-|..+...+ ........ -...+..+
T Consensus 245 D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p------~~s~i~~f 318 (1118)
T KOG1275|consen 245 DPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNP------NGSGISAF 318 (1118)
T ss_pred cchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEcc------CCCcceeE
Confidence 455788998765433 34556666889997 467889999999999884432222 12222200 23449999
Q ss_pred EECCCCCeEEEEEcCCcEEEEEc
Q 005459 314 AWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 314 ~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.+|++|..||.|..+|.|-+|.-
T Consensus 319 DiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred EecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999973
No 347
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.61 E-value=0.42 Score=53.28 Aligned_cols=103 Identities=10% Similarity=0.039 Sum_probs=69.6
Q ss_pred EEEEeCCcEEEEee-ccCCceeeeeeeccee----------------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEcc
Q 005459 224 FVLYSNGQLMSCSV-SKKGLKLAEFIKIDKE----------------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (696)
Q Consensus 224 ~~~s~dG~~~~~~~-~d~~~~~~~~~~~~~~----------------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~ 286 (696)
+.++|||+.++++. .+.++.+.|..+.+.+ .| ..+...+|.++|....+-.-|..|..||++
T Consensus 326 V~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG-lGPLHTaFDg~G~aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 326 VNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG-LGPLHTAFDGRGNAYTTLFLDSQIVKWNIE 404 (635)
T ss_pred eEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC-CCcceEEECCCCCEEEeEeecceeEEEehH
Confidence 45899999887766 4677777776653321 12 456678999999999999999999999987
Q ss_pred CC-----Cc-eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 287 ES-----AS-LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 287 ~~-----~~-~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
.. ++ ....+...+..|.++|......=.-.|||++|++...
T Consensus 405 ~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 405 AAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred HHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 51 11 1223344444566666544444445789999988644
No 348
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.83 E-value=0.079 Score=37.67 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=29.4
Q ss_pred CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCC
Q 005459 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~ 339 (696)
...|.+++|+|....||.|..||.|.++.+...
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 456999999999999999999999999998443
No 349
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=94.80 E-value=7.1 Score=42.02 Aligned_cols=83 Identities=28% Similarity=0.386 Sum_probs=50.9
Q ss_pred EEEEcCCCcEEEEEecCCeEEEEEccCCCcee-----eEEe-------e----------ccC----------C--CCCCC
Q 005459 261 CASIAPEQQILAVGTRRGVVELYDLAESASLI-----RTVS-------L----------YDW----------G--YSMDD 306 (696)
Q Consensus 261 ~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~-----~~~~-------~----------~~~----------~--~~~~h 306 (696)
.++|+++..-||+|...|.|.||....+...- .... . .+. | .-...
T Consensus 6 ~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~ 85 (395)
T PF08596_consen 6 HVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAK 85 (395)
T ss_dssp EEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---
T ss_pred EEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheecc
Confidence 37777777778888888888887765421100 0000 0 000 0 00124
Q ss_pred CCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEE
Q 005459 307 TGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 307 ~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
.|+|++++.| |=-.+|.|+++|.+.|-|+.+...+..
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~ 122 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN 122 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee
Confidence 7999999998 545999999999999999999887765
No 350
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.80 E-value=0.55 Score=52.36 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=76.2
Q ss_pred ECCCCCeEEEEEcCCcEEEEEccC-----CeeEEEeecccccceecccccCCCCCCccceecce----eeEEEcCCCceE
Q 005459 315 WTPDNSAFAVGWKSRGLTVWSVSG-----CRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT----SMMQWDEYGYRL 385 (696)
Q Consensus 315 ~spdg~~lasg~~Dg~v~vW~~~~-----~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~----~~~~W~~~~~~l 385 (696)
+.+||++...+ ++.|.+.|..+ ...+..+.-. .....+.++||+ +++.... ++-+-|.+..+-
T Consensus 284 ~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yIPVG--KsPHGV~vSPDG----kylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 284 AVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYVPVP--KNPHGVNTSPDG----KYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hhhCCCEEEEC--CCEEEEEECCccccCCcceEEEEECC--CCccceEECCCC----CEEEEeCCCCCcEEEEEChhhhh
Confidence 34578877663 57899999987 4566666643 346778899999 6554332 555556554331
Q ss_pred ------------EEEecCCcceE-EEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEe-ecCeeee-
Q 005459 386 ------------YAIEEGSSERV-LIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHL-NLPVSYI- 449 (696)
Q Consensus 386 ------------~~~~~~~~~~v-~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~- 449 (696)
.....-...++ .+|+. ++...|-..|..+-.|++...-. .+.|.+ .|..+ +++-.|.
T Consensus 356 ~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~---~~~g~~----~~~v~~k~dV~y~p 428 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIR---AYKGEK----VDPIVQKLDVHYQP 428 (635)
T ss_pred hhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHH---Hhcccc----CCcceecccCCCcc
Confidence 11111112233 55555 55556666677777777654210 001111 11111 1233332
Q ss_pred cCCCceEEEEEcCCCCEEEEEeC
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~ 472 (696)
+|+..-..=.-.|||+||++...
T Consensus 429 gh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 429 GHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceeeecCCCcCCCCCCEEEEccc
Confidence 44332222335799999988753
No 351
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.46 Score=49.10 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCCCCCeEEEEECCCCC-eEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCC
Q 005459 304 MDDTGPVSCIAWTPDNS-AFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPN 361 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~-~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~ 361 (696)
+.|...|++|+|||..+ .|..++.+.+|+|.|+++..++.+...+ ..+++++|+-+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDld 246 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDLD 246 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--CCceeeeeccC
Confidence 34888999999999888 6778999999999999998877666554 33444444333
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.76 E-value=0.069 Score=59.69 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=59.5
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
+.+.|+|..-.||.|..-|.+.+|...+ ...++... .|+.++.-+.|||||.+|.++..-|.|.+|...
T Consensus 63 tSLCWHpe~~vLa~gwe~g~~~v~~~~~--~e~htv~~-------th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 63 TSLCWHPEEFVLAQGWEMGVSDVQKTNT--TETHTVVE-------THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhccChHHHHHhhccccceeEEEecCC--ceeeeecc-------CCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3488999999999999999999999876 33444443 399999999999999999999999999999875
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.69 E-value=0.059 Score=38.31 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.8
Q ss_pred cccEEEEcCCCcEEEEEecCcEEEEEEEE
Q 005459 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQ 97 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~ 97 (696)
++..++|+|...+||+++.+|.|.+|++.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 46789999999999999999999999984
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.30 E-value=6.4 Score=39.32 Aligned_cols=219 Identities=13% Similarity=0.069 Sum_probs=99.8
Q ss_pred CceEEEEEeCCc-EEEEEc-cCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 21 SQQIIYFKVNNG-LLLIAS-PCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 21 ~~~~v~fs~dg~-lla~~~-~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
..+-+.++||.+ |||+.. +..|...+. .+..+..+. +...|..-.+++.-++.++++.-.++.|.++++..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~-----l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIP-----LDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE------SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEe-----CCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 467799999855 555553 346655555 334343332 44567888999998887777665688899999854
Q ss_pred cCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcc
Q 005459 99 TEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSV 178 (696)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~ 178 (696)
....... ..+..+.+.+... ......-.|..+.+++++++-...-..++.+++.... ..+ ..
T Consensus 96 ~~~~~~~-------~~~~~~~l~~~~~---~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~-~~~-------~~ 157 (248)
T PF06977_consen 96 DTTSLDR-------ADVQKISLGFPNK---GNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG-FDL-------FV 157 (248)
T ss_dssp --TT--E-------EEEEEEE---S------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S-S---------EE
T ss_pred cccccch-------hhceEEecccccC---CCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc-cce-------ee
Confidence 3221100 0011111111100 0111112255556678887766555555555542200 000 00
Q ss_pred cccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEEeCCcEEEEeeccCCce-eeeeeeccee--cC
Q 005459 179 AALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLK-LAEFIKIDKE--LG 255 (696)
Q Consensus 179 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~-~~~~~~~~~~--~~ 255 (696)
....++.. ....-.-+..+.|++..+.+.+++...+.++.-..++.+. .+.+..+..- ..
T Consensus 158 ~~~~~~~~-----------------~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~ 220 (248)
T PF06977_consen 158 SDDQDLDD-----------------DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKD 220 (248)
T ss_dssp EE-HHHH------------------HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS-
T ss_pred cccccccc-----------------ccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccc
Confidence 00000000 0001112567788998888888888888887666666543 3443332100 01
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEE
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVEL 282 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~v 282 (696)
...+--++|.++|++.++. +-+...+
T Consensus 221 ~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 221 IPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp --SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred cCCccEEEECCCCCEEEEc-CCceEEE
Confidence 1223338899999877765 4444333
No 355
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.25 E-value=5.3 Score=43.88 Aligned_cols=59 Identities=19% Similarity=0.334 Sum_probs=42.3
Q ss_pred EEEcCCCcEEEEEecC-CeEEEEEccCC-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGTRR-GVVELYDLAES-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~~d-g~v~vw~~~~~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
+||+|+.+.+|+++.- +.|.||.+... ...++.++. +....-..++|--|.-.|+--+.
T Consensus 344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqL-------e~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQL-------ESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEc-------ccCCCCceeeEccCCeEEEEecc
Confidence 8999999999999975 57899998752 234566655 23445677888878776665443
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.25 E-value=2.4 Score=48.14 Aligned_cols=106 Identities=14% Similarity=0.006 Sum_probs=58.8
Q ss_pred EEEEEeCCcEEEEee------ccCCceeeeeeec---cee-cCCCCeEEEEEcCCCcEEEEEecC-CeEEEEEccCCCce
Q 005459 223 LFVLYSNGQLMSCSV------SKKGLKLAEFIKI---DKE-LGSGDAVCASIAPEQQILAVGTRR-GVVELYDLAESASL 291 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~------~d~~~~~~~~~~~---~~~-~~~~~~v~v~~sp~~~~la~g~~d-g~v~vw~~~~~~~~ 291 (696)
..++++||+.++... .|..-.+|-...+ +.+ .+ ..-..-+|+|||+.|++.... ..+++.+-.. ...
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~-~gq 431 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA-TGQ 431 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC-CCCCCceECCCCCceEEEecCcceEEEeccCC-Cce
Confidence 456889999877666 2444456644321 111 22 122337899999988887643 2233433222 112
Q ss_pred eeEEe--eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEE
Q 005459 292 IRTVS--LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTV 333 (696)
Q Consensus 292 ~~~~~--~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~v 333 (696)
+..+. +... .. ...+.|..++|||||+.+|.-.. +.|.+
T Consensus 432 l~~~~vd~ge~-~~-~~~g~Issl~wSpDG~RiA~i~~-g~v~V 472 (591)
T PRK13616 432 LARTPVDASAV-AS-RVPGPISELQLSRDGVRAAMIIG-GKVYL 472 (591)
T ss_pred EEEEeccCchh-hh-ccCCCcCeEEECCCCCEEEEEEC-CEEEE
Confidence 22111 1000 00 13568999999999999987663 54444
No 357
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.16 E-value=1.7 Score=50.28 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=51.6
Q ss_pred ceEEEEEeCCcEEEEEccCeEEEeecCCce----------ee-EE-EeecChHHH--hhcccccEEEEcCCC---cEEEE
Q 005459 22 QQIIYFKVNNGLLLIASPCHIELWSSSQHK----------VR-LG-KYKRDSESV--QREGENLQAVWSPDT---KLIAV 84 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~~v~iW~~~~~~----------~~-l~-~~~r~~~sl--~~~G~~~~v~wsPDg---~~lav 84 (696)
..-|.+||+|+++|.++...|.|-.+-+.- .. .+ .+.-...-+ .....+..+.|.|.+ +.|++
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v 166 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV 166 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence 344679999999999999988887763210 00 11 111011111 112456789999985 89999
Q ss_pred EecCcEEEEEEEEe
Q 005459 85 VTSSLYLHIFKVQI 98 (696)
Q Consensus 85 ~t~dg~l~l~~l~~ 98 (696)
-|+|+++|+||+..
T Consensus 167 Ltsdn~lR~y~~~~ 180 (717)
T PF10168_consen 167 LTSDNTLRLYDISD 180 (717)
T ss_pred EecCCEEEEEecCC
Confidence 99999999999964
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.97 E-value=0.71 Score=39.36 Aligned_cols=65 Identities=15% Similarity=0.258 Sum_probs=49.6
Q ss_pred eEE-EEEcCCC-cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 259 AVC-ASIAPEQ-QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 259 ~v~-v~~sp~~-~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
+.| +.|.-|| +-|.+|+.|..||+|+-+ +.+..+.. ++.|.+|+-... ..++-|-++|+|.+++-
T Consensus 4 al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e---------~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 4 ALCLFDFDGDGENELLVGSDDFEIRVFKGD---EIVAEITE---------TDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred EEEEEecCCCCcceEEEecCCcEEEEEeCC---cEEEEEec---------ccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 445 5666664 578999999999999843 55666664 677888887776 56888999999988864
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.93 E-value=11 Score=40.84 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCEEEEEeCCc-c---E-EEEccCC-----ceEecCCccceeeeEEEeEeeeCc-EEEEEEeecCCCeEEE
Q 005459 455 VQHVAASKDGMFLAVAGLHG-L---I-LYDIRQK-----KWRVFGDITQEQKIQSKGLLWLGK-IIVVCNYIDSSNTYEL 523 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~dG-~---i-~w~~~sg-----~w~~f~~~~~e~~~~v~~~~w~~~-~lv~~~~~~~~~~~~l 523 (696)
...+..|+||+++++....+ . + +.+...+ +|+.+....... ...+...++ +.+.+ +.....+.|
T Consensus 229 ~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~---~~~v~~~~~~~yi~T--n~~a~~~~l 303 (414)
T PF02897_consen 229 FVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV---EYYVDHHGDRLYILT--NDDAPNGRL 303 (414)
T ss_dssp EEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS----EEEEEEETTEEEEEE---TT-TT-EE
T ss_pred EEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce---EEEEEccCCEEEEee--CCCCCCcEE
Confidence 45688999999987654433 2 4 5566654 676653321111 112333355 44444 344444555
Q ss_pred EEeeCCCCCc--cc-eeEEeecCC-ccEEEEccCCEEEE-EEcCceEEEEEEEEe
Q 005459 524 LFYPRYHLDQ--SS-LLCRKSLLA-KPIVMDVYEDYILV-TYRPFDVHIFHVKLF 573 (696)
Q Consensus 524 r~y~~~~l~~--~~-~~~~~~~~~-~~l~~~~~~~~llv-~~~d~~~~l~~~~~~ 573 (696)
--.+..+... .. .+..+ -.. ....+...+++|++ ...++.-+|+.+...
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPE-DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEecccccccccceeEEcCC-CCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 5555543221 11 11111 111 12344567787777 555666666666653
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.93 E-value=7.5 Score=38.81 Aligned_cols=123 Identities=12% Similarity=0.134 Sum_probs=65.3
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (696)
Q Consensus 211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~ 290 (696)
+..++|.+..+.+.++......++--..++.+. ... .+.+..+.=-+++.-++.++++--.++.+.+++++....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vl--r~i---~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVL--RRI---PLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETT--EE--EEE---E-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcCCCCEE--EEE---eCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 667777776554444444433333222333221 000 113434444478877787776655689999999855332
Q ss_pred ee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 291 LI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 291 ~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
.+ ......+.+....+...+-.|+|.|.++.|+++-+..-.+++.+.+
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 22 2222223333334666799999999999998888877788888765
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=9.7 Score=40.91 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=70.1
Q ss_pred EEEeCCc-EEEEeeccCCceeeeeeeccee----cCCCCeEEEEEcCCCcEEEEEec---CCeEEEEEccCCCceeeEEe
Q 005459 225 VLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE----LGSGDAVCASIAPEQQILAVGTR---RGVVELYDLAESASLIRTVS 296 (696)
Q Consensus 225 ~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~v~~sp~~~~la~g~~---dg~v~vw~~~~~~~~~~~~~ 296 (696)
.++++|. .++....+..+.+.|....... .+. .+.-++++|+++.+-++.. ++++.+.|..+ ...+.+..
T Consensus 80 ~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~~~~ 157 (381)
T COG3391 80 AVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTATIP 157 (381)
T ss_pred eeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEEEEe
Confidence 3556666 5665555666776664332222 222 4445999999977766655 67888888776 56665544
Q ss_pred eccCCCCCCCCCCeEEEEECCCCCeEEEEE-cCCcEEEEEccCCeeE
Q 005459 297 LYDWGYSMDDTGPVSCIAWTPDNSAFAVGW-KSRGLTVWSVSGCRLM 342 (696)
Q Consensus 297 ~~~~~~~~~h~g~V~~l~~spdg~~lasg~-~Dg~v~vW~~~~~~~~ 342 (696)
. -..+ ..++++|+|+.+.+.. .++.+.+.|..+....
T Consensus 158 v--------G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~ 195 (381)
T COG3391 158 V--------GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV 195 (381)
T ss_pred c--------CCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence 3 1234 8899999999776665 6789999996665443
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.87 E-value=2.2 Score=48.38 Aligned_cols=70 Identities=20% Similarity=0.354 Sum_probs=48.6
Q ss_pred EEcCCCCEEEEEeCCcc-----E-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 459 AASKDGMFLAVAGLHGL-----I-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~-----i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+..-+|+..|+||.||. + .||..+.+|.....-...+. .+....+.+..-+++++........+..|+.+
T Consensus 471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs-~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS-AVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc-cccEEEECCEEEEEecccCccccceeEEcCCC
Confidence 44568889999998873 6 89999999998754433331 23334555666677777666666788888764
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.73 E-value=0.56 Score=50.91 Aligned_cols=130 Identities=13% Similarity=0.247 Sum_probs=66.7
Q ss_pred EEEEEeCCcEEEEee--ccC--Cceeeeeeeccee--cCCC-CeEEEEEcCCCcEEEEE-ecCCeEEEEEccCCCceeeE
Q 005459 223 LFVLYSNGQLMSCSV--SKK--GLKLAEFIKIDKE--LGSG-DAVCASIAPEQQILAVG-TRRGVVELYDLAESASLIRT 294 (696)
Q Consensus 223 ~~~~s~dG~~~~~~~--~d~--~~~~~~~~~~~~~--~~~~-~~v~v~~sp~~~~la~g-~~dg~v~vw~~~~~~~~~~~ 294 (696)
.-.+++||+.++... ..+ .+.+++...++.. ..-. ....-+|+|||+.||.. ..||...+|-++..++....
T Consensus 197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~ 276 (425)
T COG0823 197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR 276 (425)
T ss_pred ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee
Confidence 344667776554433 122 2444555544321 1111 11226899999988865 56777666655543344433
Q ss_pred EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-c--EEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 295 VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-G--LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 295 ~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~--v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+.. -.+.-..=.|||||+.++-.+..+ . |.+.+..++.. ..+...+... ..+.++|++
T Consensus 277 Lt~--------~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~-~~p~~SpdG 337 (425)
T COG0823 277 LTN--------GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGN-SNPVWSPDG 337 (425)
T ss_pred ccc--------CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCC-cCccCCCCC
Confidence 332 122222457999999887765543 3 45555566543 2222111111 156666666
No 364
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.67 E-value=5.9 Score=39.85 Aligned_cols=95 Identities=19% Similarity=0.259 Sum_probs=56.8
Q ss_pred CeEEEEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEE-
Q 005459 258 DAVCASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWS- 335 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~- 335 (696)
.....++|++++.+|.-. .++.-.||-....+.....+.+ ..+..-+|+++|...++...+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g----------~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG----------GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC----------CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 445599999999887765 3334445544442333322233 2677789999999888888777878874
Q ss_pred ccCCe-eEEEeeccccc-ceecccccCCC
Q 005459 336 VSGCR-LMSTIRQISLS-SISSPIVKPNQ 362 (696)
Q Consensus 336 ~~~~~-~~~~l~~~~~~-~v~~~~~sp~~ 362 (696)
...+. ....+...... .|+++++|||+
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC
Confidence 22222 11122211111 57777777777
No 365
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.17 E-value=6.7 Score=42.88 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=46.2
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEE-EccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELY-DLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw-~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
+..++|.++++ +|+-..+++|+++ +.+. +..+.+.. ...+..|-. |..|+..+.+ .|.+||..
T Consensus 71 g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~--~~~k~i~~---------~~~~~~If~---G~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 71 GLSFVWSSRNR-YAVLESSSTIKIYKNFKN--EVVKSIKL---------PFSVEKIFG---GNLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp -SEEEE-TSSE-EEEE-TTS-EEEEETTEE---TT--------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred eeEEEEecCcc-EEEEECCCeEEEEEcCcc--ccceEEcC---------CcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence 34477888555 6776778999996 3322 22233333 223455543 8888888774 89999999
Q ss_pred CCeeEEEeecccccceecccccCCC
Q 005459 338 GCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 338 ~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
+++.+..+.-. .|..+.|++++
T Consensus 135 ~~~~i~~i~v~---~vk~V~Ws~~g 156 (443)
T PF04053_consen 135 TGKLIRRIDVS---AVKYVIWSDDG 156 (443)
T ss_dssp T--EEEEESS----E-EEEEE-TTS
T ss_pred HcceeeEEecC---CCcEEEEECCC
Confidence 99998887643 36667777766
No 366
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=92.12 E-value=12 Score=44.09 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=48.9
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEE-----------eeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESASLIRTV-----------SLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~-----------~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
+.+....-+..++....||+|.++|-.+ .+.+... +..+.++...+-.++..++|||.+..++.-..|
T Consensus 263 ~si~~~~~~~~v~~~~~DGsI~~~dr~t-~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~~ 341 (753)
T PF11635_consen 263 VSITSPELDIVVAFAFSDGSIEFRDRNT-MKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDED 341 (753)
T ss_pred EEEEecccCcEEEEEEcCCeEEEEecCc-chhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEecC
Confidence 3355555677899999999999999766 3222111 111222332334467789999999999999999
Q ss_pred CcEE
Q 005459 329 RGLT 332 (696)
Q Consensus 329 g~v~ 332 (696)
|.+.
T Consensus 342 ~~~~ 345 (753)
T PF11635_consen 342 GKTK 345 (753)
T ss_pred CCce
Confidence 8876
No 367
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=91.86 E-value=0.51 Score=45.33 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=58.6
Q ss_pred CcEEEEeeccCCceeeeeeecc----ee-cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 230 GQLMSCSVSKKGLKLAEFIKID----KE-LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 230 G~~~~~~~~d~~~~~~~~~~~~----~~-~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
++-++++..++.+.+|....-. .. .+-+...| +..-.++.+..+|+.||.||.|++.. .+.+-....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-~k~~g~~g~------ 142 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-NKVLGYVGQ------ 142 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-Cceeeeecc------
Confidence 4455666667766666543110 00 12233344 55555677899999999999999876 443333333
Q ss_pred CCCC-CCeEEEEECCCCCeEEEE--EcCCcEEEEEcc
Q 005459 304 MDDT-GPVSCIAWTPDNSAFAVG--WKSRGLTVWSVS 337 (696)
Q Consensus 304 ~~h~-g~V~~l~~spdg~~lasg--~~Dg~v~vW~~~ 337 (696)
|+ .++..+..+..++.|+.+ +.|..++.|++.
T Consensus 143 --h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 143 --HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred --ccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 66 455555555555666666 666666666664
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=91.80 E-value=16 Score=36.98 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~ 340 (696)
..++.|++|+++| +.+|+.+......+..+ ..+|..|..-|+-+.|++-++ +.+.++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----------~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK----------LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee----------cceEEEEEEecccCEEEEEcC-CccEEEEchhhc
Confidence 4578899999999 89999844234444333 334999999998887777654 999999986543
No 369
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.74 E-value=15 Score=36.36 Aligned_cols=62 Identities=16% Similarity=0.142 Sum_probs=32.5
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee--cCCCCeEE--EEEcC-CCcEEEEEecCCeEEEEEcc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC--ASIAP-EQQILAVGTRRGVVELYDLA 286 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~--v~~sp-~~~~la~g~~dg~v~vw~~~ 286 (696)
+...+||.++.+++.|++....|..+-.+. ....+.+. =+++| ++.+.|+ ...|.|.--+.+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a-~t~G~vlavt~~ 165 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKN 165 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE-eccceEEEEccC
Confidence 345677888888888887777666543222 11122222 35566 5554444 344544433333
No 370
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.38 E-value=2 Score=42.67 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=34.9
Q ss_pred EEEeCCcEEEEEc------cCeEEEeecCCceeeEEEeecChHHHhhcccc-cEEEEcCCCcEEEEEe
Q 005459 26 YFKVNNGLLLIAS------PCHIELWSSSQHKVRLGKYKRDSESVQREGEN-LQAVWSPDTKLIAVVT 86 (696)
Q Consensus 26 ~fs~dg~lla~~~------~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~-~~v~wsPDg~~lav~t 86 (696)
.|||||++|-+.. .+-|-|+|.+..-..++. +.+||-- -.+.|.+||+.++++.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE-------~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGE-------FSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecc-------cccCCcCcceeEEecCCcEEEEeC
Confidence 3999999886652 235889998622122222 2234421 3699999999999974
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.94 E-value=8.9 Score=43.62 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=51.0
Q ss_pred EEEEcCCCcEEEEEe------cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEE
Q 005459 261 CASIAPEQQILAVGT------RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTV 333 (696)
Q Consensus 261 ~v~~sp~~~~la~g~------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~v 333 (696)
..++||||+.+|.-- .|..-.||-.+..+.......+ . ....=+|+|||..|++.... ..+++
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g--------~--~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEG--------H--SLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecC--------C--CCCCceECCCCCceEEEecCcceEEE
Confidence 389999999998766 3554455554432333222222 2 36778999999988877542 11222
Q ss_pred E-----------EccCCeeEEEeecccccceecccccCCC
Q 005459 334 W-----------SVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 334 W-----------~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
. .+.++.... .. ...|.++++|||+
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~-~g~Issl~wSpDG 459 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RV-PGPISELQLSRDG 459 (591)
T ss_pred eccCCCceEEEEeccCchhhh---cc-CCCcCeEEECCCC
Confidence 2 333332211 11 2358888888888
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.91 E-value=2 Score=49.79 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=61.1
Q ss_pred EEEEeeccCCceeeeeeec-cee---cC-----CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCC
Q 005459 232 LMSCSVSKKGLKLAEFIKI-DKE---LG-----SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGY 302 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~-~~~---~~-----~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 302 (696)
.-+++.++..+..||.+.. .++ .. -.+-.|++-+.+| .||+|+.+|.||+||--. ......+.+
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~----- 616 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPG----- 616 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCC-----
Confidence 3456677777778887642 111 11 1233456655555 689999999999999421 221222223
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
-..||..|..+.||++|++... .-+-+.++
T Consensus 617 ---lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 617 ---LGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred ---CCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 4679999999999999887665 56667665
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.65 E-value=0.99 Score=52.49 Aligned_cols=71 Identities=18% Similarity=0.328 Sum_probs=50.7
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
...+++||.+|++++.|-.+|.|.+||+.. +...+.+....-| |++ |..+.|..++..+.++..-|. +|..
T Consensus 132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap----~t~-vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAP----VTG-VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCc----cce-EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 344599999999999999999999999987 6777766651110 222 445566667777777766443 7775
No 374
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.03 E-value=47 Score=39.34 Aligned_cols=77 Identities=14% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEee-cChHHHhhcccccEEEEcCCC------cEEEEEecCcE
Q 005459 19 PSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYK-RDSESVQREGENLQAVWSPDT------KLIAVVTSSLY 90 (696)
Q Consensus 19 ~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~-r~~~sl~~~G~~~~v~wsPDg------~~lav~t~dg~ 90 (696)
|+..+|+....+.+.++++ +...+.-.... .+.++..+. |.. -...+.++++.||. +.+++++.|+.
T Consensus 537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d-~sgql~E~~er~t----l~~~vac~ai~~~~~g~krsrfla~a~~d~~ 611 (1205)
T KOG1898|consen 537 PERVRIVKCAVNRRQIVVALSNGELVYFEGD-VSGQLNEFTERVT----LSTDVACLAIGQDPEGEKRSRFLALASVDNM 611 (1205)
T ss_pred CCceEEEEEeecceEEEEEccCCeEEEEEec-cCccceeeeeeee----eceeehhhccCCCCcchhhcceeeeeccccc
Confidence 4567777666665555555 55554434332 334455553 221 23567789999887 47999999999
Q ss_pred EEEEEEEecC
Q 005459 91 LHIFKVQITE 100 (696)
Q Consensus 91 l~l~~l~~~~ 100 (696)
++++.+....
T Consensus 612 vriisL~p~d 621 (1205)
T KOG1898|consen 612 VRIISLDPSD 621 (1205)
T ss_pred eeEEEecCcc
Confidence 9999998443
No 375
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.95 E-value=32 Score=37.27 Aligned_cols=57 Identities=19% Similarity=0.401 Sum_probs=39.2
Q ss_pred EEEcCCCcEEEEEe-cCC----eEEEEEccCCCceee-EEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC
Q 005459 262 ASIAPEQQILAVGT-RRG----VVELYDLAESASLIR-TVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR 329 (696)
Q Consensus 262 v~~sp~~~~la~g~-~dg----~v~vw~~~~~~~~~~-~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg 329 (696)
.++|||++++|.+- ..| +++++|+++ ++.+. .+.. .. -..++|++||+.|+-...|.
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~---------~~-~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIEN---------PK-FSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEE---------EE-SEEEEECTTSSEEEEEECST
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCcccc---------cc-cceEEEeCCCCEEEEEEeCc
Confidence 78999999999773 334 499999988 54443 2232 11 12399999999887665443
No 376
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.48 E-value=4.2 Score=47.87 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=49.9
Q ss_pred ceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec-CCccceeeeEEEeEeeeCcEEEEEEeec------CCCeEEEEE
Q 005459 454 PVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF-GDITQEQKIQSKGLLWLGKIIVVCNYID------SSNTYELLF 525 (696)
Q Consensus 454 ~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f-~~~~~e~~~~v~~~~w~~~~lv~~~~~~------~~~~~~lr~ 525 (696)
...+++|||.|+.+++|-..|++ -|...-..-+.. +.+..| .+.|.+++|......+..|.. .-+.|..++
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-~yrvl~v~Wl~t~eflvvy~n~ts~~~dpd~y~~~~ 278 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-NYRVLSVTWLSTQEFLVVYGNVTSETDDPDSYDQKM 278 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-CcceeEEEEecceeEEEEecccccCcCCchhhhhcc
Confidence 47899999999999999999999 887654422222 222233 567889999866544443421 224456677
Q ss_pred eeCC
Q 005459 526 YPRY 529 (696)
Q Consensus 526 y~~~ 529 (696)
|...
T Consensus 279 ~k~k 282 (1405)
T KOG3630|consen 279 YKIK 282 (1405)
T ss_pred cccc
Confidence 7664
No 377
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.90 E-value=43 Score=37.31 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=41.3
Q ss_pred cEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC--CCCeEEEEE---------cCCcEEEEEcc
Q 005459 269 QILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP--DNSAFAVGW---------KSRGLTVWSVS 337 (696)
Q Consensus 269 ~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp--dg~~lasg~---------~Dg~v~vW~~~ 337 (696)
..+.+++.+|.|.-+|.++ ++.+-...... +...-..+.-+| .+..++.++ .++.+...|..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-G~~~W~~~~~~------~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~ 183 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-GKQVWKFGNND------QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVE 183 (488)
T ss_pred CeEEEecCCCeEEEEECCC-CCEeeeecCCC------CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECC
Confidence 5777888999999999988 55543333211 100000111122 123444443 35778888988
Q ss_pred CCeeEEEeec
Q 005459 338 GCRLMSTIRQ 347 (696)
Q Consensus 338 ~~~~~~~l~~ 347 (696)
+++.+...+.
T Consensus 184 TG~~~W~~~~ 193 (488)
T cd00216 184 TGKLLWRFYT 193 (488)
T ss_pred CCceeeEeec
Confidence 8887776653
No 378
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.08 E-value=34 Score=35.25 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 266 PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
.++..++.+ ..|. ||...+.++..+.+.. +-.+.+..+.-++||+++|++..-.-..-|+..... ....
T Consensus 113 ~~~~~~l~~-~~G~--iy~T~DgG~tW~~~~~-------~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~ 181 (302)
T PF14870_consen 113 GDGSAELAG-DRGA--IYRTTDGGKTWQAVVS-------ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPH 181 (302)
T ss_dssp ETTEEEEEE-TT----EEEESSTTSSEEEEE--------S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEE
T ss_pred CCCcEEEEc-CCCc--EEEeCCCCCCeeEccc-------CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEE
Confidence 334444433 3443 5666665666555443 256889999999999999998774445667653321 1111
Q ss_pred ecccccceecccccCCC
Q 005459 346 RQISLSSISSPIVKPNQ 362 (696)
Q Consensus 346 ~~~~~~~v~~~~~sp~~ 362 (696)
.-....+++++.|+|++
T Consensus 182 ~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 182 NRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp E--SSS-EEEEEE-TTS
T ss_pred ccCccceehhceecCCC
Confidence 11123456666676665
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=87.34 E-value=39 Score=34.99 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=43.3
Q ss_pred EEEEeeccCCceeeeeeeccee--cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCC
Q 005459 232 LMSCSVSKKGLKLAEFIKIDKE--LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTG 308 (696)
Q Consensus 232 ~~~~~~~d~~~~~~~~~~~~~~--~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g 308 (696)
++.+....+.+..|+..+++.. .......+ ..+..++.++++ .. -+.+++.+. +..+..+....-+ ....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~--~~-g~~~~~~~~-~~~~t~~~~~~~~---~~~~ 111 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC--EH-GVRLLDPDT-GGKITLLAEPEDG---LPLN 111 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE--cc-ccEEEeccC-CceeEEeccccCC---CCcC
Confidence 4444455556666666544221 22223344 556666665554 22 345666654 4432322221100 0123
Q ss_pred CeEEEEECCCCCeEEEE
Q 005459 309 PVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg 325 (696)
.-+.+...|||..-++.
T Consensus 112 r~ND~~v~pdG~~wfgt 128 (307)
T COG3386 112 RPNDGVVDPDGRIWFGD 128 (307)
T ss_pred CCCceeEcCCCCEEEeC
Confidence 46778889999876654
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.24 E-value=36 Score=34.47 Aligned_cols=174 Identities=15% Similarity=0.217 Sum_probs=94.3
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCc
Q 005459 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAESAS 290 (696)
Q Consensus 211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~ 290 (696)
+.++.|+|..+.+.++...+..++--..+|.+ ..--.+.+-.++=.+++--++++.++-=.++++.++.++....
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-----irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-----IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCce-----EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 66666665555444444444433322222211 0001124445555578888888888888899999999887333
Q ss_pred eeeEEe-eccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 291 LIRTVS-LYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 291 ~~~~~~-~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
.+..-. ...++.........-.++|+|....|..+=+-+=++|+.+.... ..+..| +...|. .....+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~--~~l~~~-------~~~~~~--~~~~~f 231 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSP--SSLSVH-------ASLDPT--ADRDLF 231 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCC--cccccc-------cccCcc--cccceE
Confidence 322111 11112222225567889999999999999888888888876432 111111 000111 111344
Q ss_pred ecceeeEEEcCCCceEEEEecCCcceEEEEec
Q 005459 370 MSGTSMMQWDEYGYRLYAIEEGSSERVLIFSF 401 (696)
Q Consensus 370 ~sg~~~~~W~~~~~~l~~~~~~~~~~v~~~~~ 401 (696)
+...+...++..++.++..... ...++.++.
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~E-Sr~l~Evd~ 262 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSDE-SRRLLEVDL 262 (316)
T ss_pred eeccccceecCCCCcEEEEecC-CceEEEEec
Confidence 4445667777777777665422 233444443
No 381
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.07 E-value=43 Score=35.17 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=19.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI 476 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i 476 (696)
..+++.+++.|||...++-..+|.|
T Consensus 305 ~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 305 GGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp SS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred CCCceEEEEcCCCeEEEEECCCCeE
Confidence 3479999999999988887777765
No 382
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=40 Score=38.46 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459 256 SGDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 256 ~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg 319 (696)
|+..+.+++||+.++||.=..+|.|.+=+++. .+..-.+... ...+-..|+|.-+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~-~~~lce~~~~-------~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDL-SQILCEFNCT-------DHDPPKQMAWCGND 271 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecch-hhhhhccCCC-------CCCchHhceeecCC
Confidence 45566699999999999999999999988776 4433333321 12223367776544
No 383
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=86.54 E-value=1.6 Score=42.11 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=49.6
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeE-EEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS-CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~-~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
+.-+++|+.+|.|.+|+....+.+...... -...|. -+.-..++.+..++..||.|+.|++.-.+.+....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--------~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g 141 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--------GEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG 141 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhc--------ccccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence 466899999999999998753333221111 111222 23333467788999999999999998888776666
Q ss_pred cc
Q 005459 347 QI 348 (696)
Q Consensus 347 ~~ 348 (696)
+|
T Consensus 142 ~h 143 (238)
T KOG2444|consen 142 QH 143 (238)
T ss_pred cc
Confidence 55
No 384
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=86.38 E-value=2 Score=29.73 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=25.8
Q ss_pred CceEEEEEcCCC---CEEEEEeCCccE-EEEccC
Q 005459 453 WPVQHVAASKDG---MFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 453 ~~I~~va~s~dG---~~la~ag~dG~i-~w~~~s 482 (696)
+.||++.|||+. .+||.+-..|.+ ++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358999999854 499999999999 999986
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=86.13 E-value=6 Score=39.81 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=39.4
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEc-cCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDL-AESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
-+|++++.+.++...+...+++.. .+.......+.. + .-.+.|..+++||||.++|.-..
T Consensus 71 PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~---~---~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 71 PSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDW---P---GLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecc---c---ccCCceEEEEECCCCcEEEEEEe
Confidence 789999998888887777777742 221111111221 0 01228999999999999987763
No 386
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=85.88 E-value=7.7 Score=45.15 Aligned_cols=117 Identities=19% Similarity=0.174 Sum_probs=72.6
Q ss_pred CCceeeeeeecce---ecCCCCeEEEEEcCC-------CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCC
Q 005459 240 KGLKLAEFIKIDK---ELGSGDAVCASIAPE-------QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGP 309 (696)
Q Consensus 240 ~~~~~~~~~~~~~---~~~~~~~v~v~~sp~-------~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~ 309 (696)
..+...|+..++. |..|.+.....|.|+ ...-.+|-.+..+..||.+-.+..+..-..++ |. ....
T Consensus 504 ~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~--Y~--~~~~ 579 (794)
T PF08553_consen 504 NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ--YS--SKNN 579 (794)
T ss_pred CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc--cc--cCCC
Confidence 3344555555543 233343323444443 23456788888999999886332221112222 21 3455
Q ss_pred eEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 310 VSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 310 V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
..|++-+.+| +||+|+.+|.||++|-.+.+.-..|.+-| .+|..+..+.||
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG-~pI~~iDvt~DG 630 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG-DPIIGIDVTADG 630 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC-CCeeEEEecCCC
Confidence 7888888888 68999999999999976665555566653 568888888887
No 387
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.86 E-value=3 Score=39.21 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=25.4
Q ss_pred cccEEEEcCCCc------EEEEEecCcEEEEEEEEe
Q 005459 69 ENLQAVWSPDTK------LIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 69 ~~~~v~wsPDg~------~lav~t~dg~l~l~~l~~ 98 (696)
.+++++|||-|= .||+.|++|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 678999999552 799999999999998753
No 388
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.81 E-value=15 Score=42.71 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=55.1
Q ss_pred EE-EEEcCCCcEEEEEecCCeEEEEEccCC--------C-c--eeeEEeeccCCCCCCCCCCeEEEEECCC---CCeEEE
Q 005459 260 VC-ASIAPEQQILAVGTRRGVVELYDLAES--------A-S--LIRTVSLYDWGYSMDDTGPVSCIAWTPD---NSAFAV 324 (696)
Q Consensus 260 v~-v~~sp~~~~la~g~~dg~v~vw~~~~~--------~-~--~~~~~~~~~~~~~~~h~g~V~~l~~spd---g~~las 324 (696)
|. +.+||+|++||..+..|.+.+.=-... + . ..+++.....-+..++...|..+.|.|. +..|++
T Consensus 87 v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~v 166 (717)
T PF10168_consen 87 VHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVV 166 (717)
T ss_pred EEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEE
Confidence 45 999999999999998876554322110 1 1 1223332222233456778999999996 589999
Q ss_pred EEcCCcEEEEEccCC
Q 005459 325 GWKSRGLTVWSVSGC 339 (696)
Q Consensus 325 g~~Dg~v~vW~~~~~ 339 (696)
-..|+++|+||+...
T Consensus 167 Ltsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 167 LTSDNTLRLYDISDP 181 (717)
T ss_pred EecCCEEEEEecCCC
Confidence 999999999999653
No 389
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.79 E-value=48 Score=34.50 Aligned_cols=183 Identities=17% Similarity=0.152 Sum_probs=91.9
Q ss_pred CcEEEEEec---------C-cEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeeeCCCeEEEE
Q 005459 79 TKLIAVVTS---------S-LYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVSDNKHMLLG 148 (696)
Q Consensus 79 g~~lav~t~---------d-g~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~llv~ 148 (696)
-.+|++||+ . |.|.+|++..... ....+++ .... .-.+.|+++..-+++++++
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~------------~~~~l~~--i~~~---~~~g~V~ai~~~~~~lv~~ 104 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPE------------NNFKLKL--IHST---EVKGPVTAICSFNGRLVVA 104 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----------------EEEE--EEEE---EESS-EEEEEEETTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccc------------cceEEEE--EEEE---eecCcceEhhhhCCEEEEe
Confidence 578999885 2 9999999975310 0001111 1111 1245788888888886665
Q ss_pred ecCCcEEEEecCCcc-ccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEEccCcceEEEEE
Q 005459 149 LSDGSLYSISWKGEF-YGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLELCLPMRLLFVLY 227 (696)
Q Consensus 149 t~~g~i~~~~w~~~~-~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s 227 (696)
. ++.+.++.|+... ....+ .......+.++.
T Consensus 105 ~-g~~l~v~~l~~~~~l~~~~-----------------------------------~~~~~~~i~sl~------------ 136 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLLKKA-----------------------------------FYDSPFYITSLS------------ 136 (321)
T ss_dssp E-TTEEEEEEEETTSSEEEEE-----------------------------------EE-BSSSEEEEE------------
T ss_pred e-cCEEEEEEccCcccchhhh-----------------------------------eecceEEEEEEe------------
Confidence 5 5788888887654 11110 001112344443
Q ss_pred eCCcEEEEeeccCCceeeeeee-ccee------cCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccCC------C--cee
Q 005459 228 SNGQLMSCSVSKKGLKLAEFIK-IDKE------LGSGDAVCASIAPEQQILAVGTRRGVVELYDLAES------A--SLI 292 (696)
Q Consensus 228 ~dG~~~~~~~~d~~~~~~~~~~-~~~~------~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~------~--~~~ 292 (696)
.-+..++++-....+.+..... ...+ ......+++.|-++++.++++..+|.+.++..+.. + .+.
T Consensus 137 ~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~ 216 (321)
T PF03178_consen 137 VFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLE 216 (321)
T ss_dssp EETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEE
T ss_pred ccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccce
Confidence 2244444444444444332211 1111 11122334777766679999999999999998731 1 122
Q ss_pred eEEeeccCCCCCCC-CCCeEEE---EECCC--CC------eEEEEEcCCcEEEE
Q 005459 293 RTVSLYDWGYSMDD-TGPVSCI---AWTPD--NS------AFAVGWKSRGLTVW 334 (696)
Q Consensus 293 ~~~~~~~~~~~~~h-~g~V~~l---~~spd--g~------~lasg~~Dg~v~vW 334 (696)
....- | ...|+++ +..|. +. .++-+..+|+|-+-
T Consensus 217 ~~~~f--------~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 217 RISSF--------HLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEE--------E-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eEEEE--------ECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 22222 3 3457777 55562 22 36677788888744
No 390
>PRK10115 protease 2; Provisional
Probab=85.56 E-value=80 Score=36.88 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=35.7
Q ss_pred EEEcCCCcEEEEEecC-----CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 262 ASIAPEQQILAVGTRR-----GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 262 v~~sp~~~~la~g~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
+.+|||+++||.+... -+|++-|+.+ +..+... ..+.-..++|++||+.|+-...+
T Consensus 132 ~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t-g~~l~~~----------i~~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 132 MAITPDNTIMALAEDFLSRRQYGIRFRNLET-GNWYPEL----------LDNVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEECCCCCEEEEEecCCCcEEEEEEEEECCC-CCCCCcc----------ccCcceEEEEeeCCCEEEEEEec
Confidence 7899999999976432 3567777765 3322111 11111469999999988776553
No 391
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.27 E-value=2.1 Score=46.03 Aligned_cols=76 Identities=25% Similarity=0.242 Sum_probs=45.4
Q ss_pred ceEEEEEeCCcEEEEEccCeEE----EeecCCceeeEEEeec-ChHHHhh-c-ccccEEEE-----------cCCCcEEE
Q 005459 22 QQIIYFKVNNGLLLIASPCHIE----LWSSSQHKVRLGKYKR-DSESVQR-E-GENLQAVW-----------SPDTKLIA 83 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~~~~~v~----iW~~~~~~~~l~~~~r-~~~sl~~-~-G~~~~v~w-----------sPDg~~la 83 (696)
...+..||+|.++|.+..+.+. -|+.......-..+.+ ....++. . ..+++++| .||...||
T Consensus 4 ~~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~ 83 (415)
T PF14655_consen 4 DCSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIA 83 (415)
T ss_pred cceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEE
Confidence 3457899999999999655433 3543111111111211 1122222 1 23455555 37889999
Q ss_pred EEecCcEEEEEEEE
Q 005459 84 VVTSSLYLHIFKVQ 97 (696)
Q Consensus 84 v~t~dg~l~l~~l~ 97 (696)
+|+++|+|++|...
T Consensus 84 VG~ssG~vrfyte~ 97 (415)
T PF14655_consen 84 VGTSSGYVRFYTEN 97 (415)
T ss_pred EEecccEEEEEecc
Confidence 99999999999975
No 392
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=84.92 E-value=46 Score=33.56 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=40.3
Q ss_pred CCcEEEEEccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459 30 NNGLLLIASPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (696)
Q Consensus 30 dg~lla~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~ 99 (696)
.++.|++++++.|.+++...+..+..... ...+..+.--|+-+.+++.+ |++|.+|++..-
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l 66 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRILK--------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSL 66 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEee--------cceEEEEEEecccCEEEEEc-CCccEEEEchhh
Confidence 45666677777798888832322222111 12277888889888877775 599999999743
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.42 E-value=2.7 Score=29.06 Aligned_cols=31 Identities=16% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCC---eEEEEEcCCcEEEEEccC
Q 005459 308 GPVSCIAWTPDNS---AFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 308 g~V~~l~~spdg~---~lasg~~Dg~v~vW~~~~ 338 (696)
|+|++++|||++. .||-+-.-+-|-|+|+..
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5799999998554 777777778899999874
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=84.07 E-value=28 Score=38.52 Aligned_cols=104 Identities=17% Similarity=0.302 Sum_probs=66.6
Q ss_pred cEEEEEccCeEEEeecCCcee-----eEEEe---ecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCccc
Q 005459 32 GLLLIASPCHIELWSSSQHKV-----RLGKY---KRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSI 103 (696)
Q Consensus 32 ~lla~~~~~~v~iW~~~~~~~-----~l~~~---~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~ 103 (696)
.|||+-..+.|.||.+- +.. .+... .|.+..+-- ....|.|....|++-|+...=.+++++.++.+.
T Consensus 74 aLLAVQHkkhVtVWqL~-~s~~e~~K~l~sQtcEi~e~~pvLp----QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srV 148 (671)
T PF15390_consen 74 ALLAVQHKKHVTVWQLC-PSTTERNKLLMSQTCEIREPFPVLP----QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRV 148 (671)
T ss_pred ceEEEeccceEEEEEec-cCccccccceeeeeeeccCCcccCC----CcccccCCCceEEEEecCceeEeeeeeeCCceE
Confidence 58998899999999984 321 11111 111111111 347899999999999999877888988665321
Q ss_pred ccCCCCCCCceeeeeeEEEeeeccccccceeE--EEeeeCCCeEEEEecCCcEEEEecCCcc
Q 005459 104 QIGGKQPSGLFFIKISLVLNEQLPFAEKGLSV--SNIVSDNKHMLLGLSDGSLYSISWKGEF 163 (696)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~~~~~~llv~t~~g~i~~~~w~~~~ 163 (696)
- .. ++ ..+.| -|+..||.+++++..+ .++.|-||...
T Consensus 149 k-------------------aD--i~-~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~q 187 (671)
T PF15390_consen 149 K-------------------AD--IK-TSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQ 187 (671)
T ss_pred E-------------------Ee--cc-CCceEEEEEecCcCCEEEEEeCC-eEEEEEecCch
Confidence 1 00 11 11223 3567799999998866 78888898643
No 395
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=83.75 E-value=13 Score=42.04 Aligned_cols=84 Identities=19% Similarity=0.360 Sum_probs=55.7
Q ss_pred cccceeeeCCCCCCCCCceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeecChHHHhhcccccEEEEc--CCCcE
Q 005459 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWS--PDTKL 81 (696)
Q Consensus 5 ~g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~ws--PDg~~ 81 (696)
++|-+.-..+.+. +..+.+..|.-++.-.+- +..++.|||.+ .+. -.+. +.+.+++.+.++.|. |||+.
T Consensus 17 ~~w~~t~~~~T~i--~~~~li~gss~~k~a~V~~~~~~LtIWD~~-~~~--lE~~---~~f~~~~~I~dLDWtst~d~qs 88 (631)
T PF12234_consen 17 IEWLLTSTFETGI--SNPSLISGSSIKKIAVVDSSRSELTIWDTR-SGV--LEYE---ESFSEDDPIRDLDWTSTPDGQS 88 (631)
T ss_pred EEEEEEEEEecCC--CCcceEeecccCcEEEEECCCCEEEEEEcC-CcE--EEEe---eeecCCCceeeceeeecCCCCE
Confidence 4566655555542 344556677766554444 35689999996 443 2222 234567899999884 89998
Q ss_pred EEEEecCcEEEEEEE
Q 005459 82 IAVVTSSLYLHIFKV 96 (696)
Q Consensus 82 lav~t~dg~l~l~~l 96 (696)
|...+-..+|.+|.-
T Consensus 89 iLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 89 ILAVGFPHHVLLYTQ 103 (631)
T ss_pred EEEEEcCcEEEEEEc
Confidence 877778889999864
No 396
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=68 Score=34.41 Aligned_cols=115 Identities=13% Similarity=0.101 Sum_probs=69.1
Q ss_pred EEEEeCCc-EEEEeeccCCceeeeeeeccee--------cCCCCeEEEEEcCCCcEEEEEecC---CeEEEEEccCCCce
Q 005459 224 FVLYSNGQ-LMSCSVSKKGLKLAEFIKIDKE--------LGSGDAVCASIAPEQQILAVGTRR---GVVELYDLAESASL 291 (696)
Q Consensus 224 ~~~s~dG~-~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~v~v~~sp~~~~la~g~~d---g~v~vw~~~~~~~~ 291 (696)
++++|+|. ++++...+.++.+.+......+ .-...+-.++++|+++.+-+.... +.+...|..+ ...
T Consensus 165 ~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNV 243 (381)
T ss_pred EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceE
Confidence 45667777 3333334555555553322211 112233348999999966665544 5888888776 333
Q ss_pred eeE-EeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC-CcEEEEEccCCeeEEEeec
Q 005459 292 IRT-VSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS-RGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 292 ~~~-~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D-g~v~vW~~~~~~~~~~l~~ 347 (696)
... ... -++....+..+|+|+.+.+.... +++.+-|..+.....+...
T Consensus 244 ~~~~~~~--------~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 244 TATDLPV--------GSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred EEecccc--------ccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 332 122 11145668999999998888444 8888888888776665543
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=83.34 E-value=18 Score=37.39 Aligned_cols=90 Identities=14% Similarity=0.218 Sum_probs=54.5
Q ss_pred EEEcCCCcEEEEEec-CCeEEEEEccC-CCcee--eEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC-cEEEEEc
Q 005459 262 ASIAPEQQILAVGTR-RGVVELYDLAE-SASLI--RTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR-GLTVWSV 336 (696)
Q Consensus 262 v~~sp~~~~la~g~~-dg~v~vw~~~~-~~~~~--~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg-~v~vW~~ 336 (696)
++||||++.|-..-. .+.|.-|+++. .+... +.... ...+.|..-.++...||++-+++..+| .|.+|+.
T Consensus 168 la~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-----~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 168 LAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-----FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred eEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-----ccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence 999999977776654 47888887762 11110 10111 001456666777888888875554444 8999998
Q ss_pred cCCeeEEEeecccccceecccc
Q 005459 337 SGCRLMSTIRQISLSSISSPIV 358 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~ 358 (696)
. ++++..++-. ...+++++|
T Consensus 243 d-G~l~~~i~lP-~~~~t~~~F 262 (307)
T COG3386 243 D-GKLLGEIKLP-VKRPTNPAF 262 (307)
T ss_pred C-CcEEEEEECC-CCCCccceE
Confidence 8 6666666544 133455554
No 398
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.17 E-value=21 Score=37.19 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=66.9
Q ss_pred CCEEEEEeC---------C-ccE-EEEccCC-----ceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEee
Q 005459 464 GMFLAVAGL---------H-GLI-LYDIRQK-----KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYP 527 (696)
Q Consensus 464 G~~la~ag~---------d-G~i-~w~~~sg-----~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~ 527 (696)
-.++++|.. . |.+ +|++... ++++... .+.+..|..++-+++.++++ .+ ..|.+|.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~--~~~~g~V~ai~~~~~~lv~~--~g----~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS--TEVKGPVTAICSFNGRLVVA--VG----NKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE--EEESS-EEEEEEETTEEEEE--ET----TEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE--EeecCcceEhhhhCCEEEEe--ec----CEEEEEE
Confidence 467887764 2 889 9999884 4554332 22334477888888887776 21 5788887
Q ss_pred CCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 528 RYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 528 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.+.-..-........+..++.+...+++++++..-..+.++.+..
T Consensus 114 l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 114 LDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred ccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 751111112233445556788889999999999889999998864
No 399
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=83.08 E-value=1.3 Score=50.63 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=46.4
Q ss_pred EeeeCCCeEEEEecCCcEEEEecCCccccceeeccCCCCCcccccccccCCCCcccccCCCccccCCcCCCcccEEEEEE
Q 005459 137 NIVSDNKHMLLGLSDGSLYSISWKGEFYGAFELVHSSNDSSVAALSHHFPSNGLASVDTSGAFVSDHKFPISSAIIWLEL 216 (696)
Q Consensus 137 ~~~~~~~~llv~t~~g~i~~~~w~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 216 (696)
.+.+..-++-++.++|.++++.|+.....-+. .|...+++|++
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~r-------------------------------------sHs~~~~d~a~ 232 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALRSLFR-------------------------------------SHSQRVTDMAF 232 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHHHHHH-------------------------------------hcCCCcccHHH
Confidence 44555566777788899999999854432110 11222223222
Q ss_pred cc-CcceEEEEEeCCcEEEEeeccCCceeeeee
Q 005459 217 CL-PMRLLFVLYSNGQLMSCSVSKKGLKLAEFI 248 (696)
Q Consensus 217 ~~-~~~~~~~~s~dG~~~~~~~~d~~~~~~~~~ 248 (696)
-. .+....-++|||+.+++.+.||.++.|..-
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 11 112233489999999999999999988753
No 400
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=82.66 E-value=67 Score=33.69 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcE
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGL 331 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v 331 (696)
++++++.....+.|....++..++....-... .+..+.+..|++.|||...++-..+|.|
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-----GGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-----TTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEcc-----ccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 45677777767788888876533322211110 1244589999999999999988888876
No 401
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=82.29 E-value=26 Score=33.82 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=41.9
Q ss_pred EEeCCcEEEEEccCeEEEeecCCc-eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecC---c---EEEEE
Q 005459 27 FKVNNGLLLIASPCHIELWSSSQH-KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSS---L---YLHIF 94 (696)
Q Consensus 27 fs~dg~lla~~~~~~v~iW~~~~~-~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~d---g---~l~l~ 94 (696)
.+..+.||++++...|.+|++.+. ..++..+ .+-|.+..+..+.-|.+|++.-.+ . ++|+|
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F-------~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTF-------STVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEE-------cchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 344355666677788999998622 2333433 234788899999999999995432 3 78887
No 402
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=81.96 E-value=2.2 Score=26.29 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=18.9
Q ss_pred ccEEEEcCCCcEEEEEecCcEEEEEE
Q 005459 70 NLQAVWSPDTKLIAVVTSSLYLHIFK 95 (696)
Q Consensus 70 ~~~v~wsPDg~~lav~t~dg~l~l~~ 95 (696)
+.+++-++ +++|++|+.++||+|.
T Consensus 4 i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 4 IEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred EEEEEccC--CEEEEEeCCCeEEecC
Confidence 34566654 6999999999999984
No 403
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=81.94 E-value=5.9 Score=44.90 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=46.2
Q ss_pred CCCcEEEEEecCCeEEEEEccC---CCceeeEEeeccC-------CC-------CCCCCCCeEEEEECC----CCCeEEE
Q 005459 266 PEQQILAVGTRRGVVELYDLAE---SASLIRTVSLYDW-------GY-------SMDDTGPVSCIAWTP----DNSAFAV 324 (696)
Q Consensus 266 p~~~~la~g~~dg~v~vw~~~~---~~~~~~~~~~~~~-------~~-------~~~h~g~V~~l~~sp----dg~~las 324 (696)
++...++++..||.+....... .+.........+. +. .....+.+..++.++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4566777788888877777654 1221111111000 00 001234567777777 7789999
Q ss_pred EEcCCcEEEEEccCCeeEEEee
Q 005459 325 GWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 325 g~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
-+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999876653
No 404
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=82 Score=36.08 Aligned_cols=52 Identities=13% Similarity=0.359 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459 278 GVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 278 g~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~ 340 (696)
-.|+||+.. |.++..+.- ..+.+-.|.||.|-+ |..-.+||++.|++..+..
T Consensus 64 ~~I~If~~s--G~lL~~~~w--------~~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILW--------KHGELIGMGWSDDEE-LICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred eeEEEEecc--ccchHHHHh--------cCCCeeeecccCCce-EEEEeccceEEEeecchhh
Confidence 357888765 455544443 334889999997754 5556788999999987753
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.27 E-value=22 Score=37.98 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=51.9
Q ss_pred EEEEeCCcEEEEEccCeEEEeecCCc--eeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEecCc
Q 005459 25 IYFKVNNGLLLIASPCHIELWSSSQH--KVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQITEK 101 (696)
Q Consensus 25 v~fs~dg~lla~~~~~~v~iW~~~~~--~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~ 101 (696)
+.|.-.++++.++..+.+.=|-+..| .+++.... ...|++.++.||||.+.||+.-++..+.+++...++.
T Consensus 28 vFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm------~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 28 VFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDM------DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred eeeccCcceEEEEecCCeeEEEEeCCCCCCCceeee------cCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence 66776677666666666777776422 23443322 2468999999999999999999999999999876554
No 406
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=81.09 E-value=2.4 Score=28.45 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=19.0
Q ss_pred cccccEEEEcCCCcEEEEEecC---cEEEEE
Q 005459 67 EGENLQAVWSPDTKLIAVVTSS---LYLHIF 94 (696)
Q Consensus 67 ~G~~~~v~wsPDg~~lav~t~d---g~l~l~ 94 (696)
.+......|||||+.|+-.+.. |.-.||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3556789999999998887654 444444
No 407
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.99 E-value=1.2e+02 Score=35.68 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=42.5
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeec---cCCCCCC-CCCCeEEEEECC--CCCeEEEEEc----------CCcE
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLY---DWGYSMD-DTGPVSCIAWTP--DNSAFAVGWK----------SRGL 331 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~---~~~~~~~-h~g~V~~l~~sp--dg~~lasg~~----------Dg~v 331 (696)
+..|.+++.|+.+.-.|.++ ++....+... ++....+ +...-..+.-+| .+..+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~T-Gk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADT-GKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCC-CCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 44777888899888888877 5554433210 0000000 000001112223 2334555532 5789
Q ss_pred EEEEccCCeeEEEee
Q 005459 332 TVWSVSGCRLMSTIR 346 (696)
Q Consensus 332 ~vW~~~~~~~~~~l~ 346 (696)
+-+|+.+++++..+.
T Consensus 339 ~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 339 RAFDVNTGALVWAWD 353 (764)
T ss_pred EEEECCCCcEeeEEe
Confidence 999999999887765
No 408
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.48 E-value=42 Score=29.85 Aligned_cols=115 Identities=15% Similarity=0.175 Sum_probs=63.1
Q ss_pred EEcCCCcEEEEEecCCeEEEEEccCC-------CceeeEEeeccCCCCCCCCCCeEEEEECC-----CCCeEEEEEcCCc
Q 005459 263 SIAPEQQILAVGTRRGVVELYDLAES-------ASLIRTVSLYDWGYSMDDTGPVSCIAWTP-----DNSAFAVGWKSRG 330 (696)
Q Consensus 263 ~~sp~~~~la~g~~dg~v~vw~~~~~-------~~~~~~~~~~~~~~~~~h~g~V~~l~~sp-----dg~~lasg~~Dg~ 330 (696)
.|.....-||.++.-|+|.|++.... ...++.+.. ...|++|+-.| +...|+.|+. ..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------n~~italaaG~l~~~~~~D~LliGt~-t~ 74 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------NQEITALAAGRLKPDDGRDCLLIGTQ-TS 74 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------CCceEEEEEEecCCCCCcCEEEEecc-ce
Confidence 34445556888888889999876531 123344443 34577775433 3457888887 68
Q ss_pred EEEEEccCCeeEEEeecccccceecccccCCCCCCccceecce--eeEEEcCCCceEEEEe
Q 005459 331 LTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT--SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 331 v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~--~~~~W~~~~~~l~~~~ 389 (696)
+..+|+....-+..- +- .+.|+++.+-.-+......++.|. .+.-+|.++.+++.+.
T Consensus 75 llaYDV~~N~d~Fyk-e~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 75 LLAYDVENNSDLFYK-EV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEEcccCchhhhh-hC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 999999766433211 11 234555554322221123344444 4444566666655443
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.23 E-value=90 Score=33.59 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=44.1
Q ss_pred Ceeee-cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCccc-eeeeEEEeEeeeCcEEE
Q 005459 445 PVSYI-SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQ-EQKIQSKGLLWLGKIIV 510 (696)
Q Consensus 445 ~~~~~-~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~-e~~~~v~~~~w~~~~lv 510 (696)
|..+. ...++|+++.||+|.+.+|+--.+..+ +++.....-++-.+.++ .....+.|++|....-+
T Consensus 58 piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~ 126 (657)
T KOG2377|consen 58 PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEI 126 (657)
T ss_pred CceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeE
Confidence 44443 456799999999999999999999999 99874332222222111 22233679999765433
No 410
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=1.1e+02 Score=37.34 Aligned_cols=42 Identities=17% Similarity=0.322 Sum_probs=32.9
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEec
Q 005459 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVF 488 (696)
Q Consensus 447 ~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f 488 (696)
.|..+++++.....+++|..++++-.||.. .||..+++-+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~~~~ 271 (993)
T KOG1983|consen 229 KYVQSAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKLQIA 271 (993)
T ss_pred ccchhhcccccccCccCCceEEEEEecCCEEeeecCCCceeec
Confidence 455566666655559999999999999999 999999876443
No 411
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=9.1 Score=41.51 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=56.9
Q ss_pred EEeeccCCceeeeeeecce----e-cCC-----CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCC
Q 005459 234 SCSVSKKGLKLAEFIKIDK----E-LGS-----GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYS 303 (696)
Q Consensus 234 ~~~~~d~~~~~~~~~~~~~----~-~~~-----~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 303 (696)
+.+..+..+..||.+-... + .+| .+-.|.+-..+ -+||+|+.+|.||+||--. ......+.+
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~-~~AKTAlPg------ 469 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIG-RRAKTALPG------ 469 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehhhh-hhhhhcccc------
Confidence 3455677777787652211 1 222 22234333333 4799999999999999632 222233344
Q ss_pred CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 304 MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 304 ~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
-..+|..+..+.||+.|..... ..+-+-++
T Consensus 470 --LG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 470 --LGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred --cCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 5678999999999998876554 45555544
No 412
>PHA02713 hypothetical protein; Provisional
Probab=79.66 E-value=36 Score=38.61 Aligned_cols=29 Identities=10% Similarity=0.328 Sum_probs=25.2
Q ss_pred CCCCEEEEEeCCc--cE-EEEccCCceEecCC
Q 005459 462 KDGMFLAVAGLHG--LI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 462 ~dG~~la~ag~dG--~i-~w~~~sg~w~~f~~ 490 (696)
-+|+..++||.+| .+ .||..+++|..+..
T Consensus 511 ~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 511 HDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred ECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 3889999999999 77 99999999997643
No 413
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.22 E-value=37 Score=36.22 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=32.8
Q ss_pred EEEEEcCCCcEEEEEecCCeEEEEEccCCC----ceeeEEeeccCCCC-CCCCCCeEEEEECCCCCeEEEEE
Q 005459 260 VCASIAPEQQILAVGTRRGVVELYDLAESA----SLIRTVSLYDWGYS-MDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 260 v~v~~sp~~~~la~g~~dg~v~vw~~~~~~----~~~~~~~~~~~~~~-~~h~g~V~~l~~spdg~~lasg~ 326 (696)
.-+++.+++ +++ ++.+...++.+.+..+ +....+.+ ++.. ..+......++|.|||...++-+
T Consensus 75 ~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 75 TGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSG--FGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEc--cCCCCCcccccccCceECCCCCEEEecc
Confidence 338888888 554 3444433444543211 11111222 2211 11234578899999998776655
No 414
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.11 E-value=60 Score=34.62 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=48.6
Q ss_pred CCeEEEEEcCCCcEEEEEe-----------cCC-eEEEEEccCC-Cce--eeEEeeccCCCCCCCCCCeEEEEECCCCCe
Q 005459 257 GDAVCASIAPEQQILAVGT-----------RRG-VVELYDLAES-ASL--IRTVSLYDWGYSMDDTGPVSCIAWTPDNSA 321 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~-----------~dg-~v~vw~~~~~-~~~--~~~~~~~~~~~~~~h~g~V~~l~~spdg~~ 321 (696)
..++.++|.++|+++++-. ..+ .|.+++-.+. +.. ...+.. .......|++.++| .
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~--------~l~~p~Gi~~~~~G-l 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE--------ELSMVTGLAVAVGG-V 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec--------CCCCccceeEecCC-E
Confidence 4566677888888776642 223 5655553321 221 122222 23345789999999 4
Q ss_pred EEEEEcCCcEEEEEccCC--------eeEEEeecc---cccceecccccCCC
Q 005459 322 FAVGWKSRGLTVWSVSGC--------RLMSTIRQI---SLSSISSPIVKPNQ 362 (696)
Q Consensus 322 lasg~~Dg~v~vW~~~~~--------~~~~~l~~~---~~~~v~~~~~sp~~ 362 (696)
++ +....-+++.+..+. .++..+... +......+++.|++
T Consensus 85 yV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 85 YV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred EE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 44 444443334454321 122223221 12346677888876
No 415
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.85 E-value=28 Score=41.45 Aligned_cols=105 Identities=11% Similarity=0.022 Sum_probs=60.5
Q ss_pred cccEEEEEEccCc-ceEEEEEeCCcEEEEeeccCCceeeeeeecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEcc
Q 005459 208 SSAIIWLELCLPM-RLLFVLYSNGQLMSCSVSKKGLKLAEFIKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLA 286 (696)
Q Consensus 208 ~~~i~~~~~~~~~-~~~~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~ 286 (696)
.....++.|.|.. ..+++...|+.+.+....-- . -.... ..--...+|++|+|+|+.+++|-.+|++.-|...
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~-~--~~v~s---~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL-A--QNVTS---FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhh-h--hhhcc---cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 3344566676655 34455556666544211100 0 00001 1122456679999999999999999999998754
Q ss_pred CCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEE
Q 005459 287 ESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAV 324 (696)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~las 324 (696)
.+..+.+.. |... ..+.|.+|+|-..-..|++
T Consensus 229 --leik~~ip~---Pp~~-e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 229 --LEIKSEIPE---PPVE-ENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred --cceeecccC---CCcC-CCcceeEEEEecceeEEEE
Confidence 343343433 1111 2578999999766555543
No 416
>PRK13684 Ycf48-like protein; Provisional
Probab=78.63 E-value=79 Score=33.22 Aligned_cols=116 Identities=10% Similarity=0.074 Sum_probs=59.6
Q ss_pred eEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 259 AVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 259 ~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
.+. +++.|++.++++|. .|.+.. ..++.++....... .-...++++.+.|+|+.+++|.. |.+.+=+..
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~-s~~~gg~tW~~~~~-------~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d 243 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYS-TWEPGQTAWTPHQR-------NSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPD 243 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEE-EcCCCCCeEEEeeC-------CCcccceeeeEcCCCCEEEEecC-CEEEEccCC
Confidence 444 88999988877765 454432 22232333333322 13567999999999998877643 554322344
Q ss_pred CCeeEEEeecc---cccceecccccCCCCCCccceecce-eeEEEcCCCceEEEE
Q 005459 338 GCRLMSTIRQI---SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAI 388 (696)
Q Consensus 338 ~~~~~~~l~~~---~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~ 388 (696)
++......... ....+.++.+.|++ ..++.|. -.+....++++-+..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~----~~~~~G~~G~v~~S~d~G~tW~~ 294 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPG----EIWAGGGNGTLLVSKDGGKTWEK 294 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCC----CEEEEcCCCeEEEeCCCCCCCeE
Confidence 44332221111 01235556666655 5555443 223334444444443
No 417
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.28 E-value=6.2 Score=26.39 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=16.7
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC
Q 005459 451 QNWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 451 ~~~~I~~va~s~dG~~la~ag~d 473 (696)
....-...+|||||++|+-.+..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 34456788999999998877654
No 418
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=77.97 E-value=1.6e+02 Score=35.06 Aligned_cols=110 Identities=14% Similarity=0.154 Sum_probs=64.7
Q ss_pred eEEEEEcCC-CCEEEEEeC----------CccE-EEEccC-CceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeE
Q 005459 455 VQHVAASKD-GMFLAVAGL----------HGLI-LYDIRQ-KKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTY 521 (696)
Q Consensus 455 I~~va~s~d-G~~la~ag~----------dG~i-~w~~~s-g~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~ 521 (696)
|.++.|..| +.|+++|.. .|.+ +|.+.. ++.++... .+-+..|-.++-+++.++++ .. .
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e--~~v~Gav~aL~~fngkllA~--In----~ 848 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAE--TVVKGAVYALVEFNGKLLAG--IN----Q 848 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeee--eeeccceeehhhhCCeEEEe--cC----c
Confidence 555668888 889998863 3666 777666 44333211 11112244677788888876 31 5
Q ss_pred EEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEE
Q 005459 522 ELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKL 572 (696)
Q Consensus 522 ~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~ 572 (696)
.+|+|.-.+--.-..-..+..+.-++.+...+|.++|+.-=+++.+-.+..
T Consensus 849 ~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 849 SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 799998641100011122223333455667999999987767777766653
No 419
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=77.86 E-value=0.66 Score=52.75 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=45.7
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEE-----------EECCCCCeEEEEEcCCc
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCI-----------AWTPDNSAFAVGWKSRG 330 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l-----------~~spdg~~lasg~~Dg~ 330 (696)
+-|-++..++..+-.+++|++-+++. . ....+.+ |...+..+ ..||||+.+|.+..||.
T Consensus 189 cp~~~~~~~ic~~~~~~~i~lL~~~r-a-~~~l~rs--------Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~ 258 (1283)
T KOG1916|consen 189 CPIAVNKVYICYGLKGGEIRLLNINR-A-LRSLFRS--------HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS 258 (1283)
T ss_pred cccccccceeeeccCCCceeEeeech-H-HHHHHHh--------cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc
Confidence 44445567888888999999988765 2 1122233 44433333 36999999999999999
Q ss_pred EEEEEc
Q 005459 331 LTVWSV 336 (696)
Q Consensus 331 v~vW~~ 336 (696)
++.|.+
T Consensus 259 v~f~Qi 264 (1283)
T KOG1916|consen 259 VGFYQI 264 (1283)
T ss_pred cceeee
Confidence 999976
No 420
>PRK10115 protease 2; Provisional
Probab=77.21 E-value=1.5e+02 Score=34.58 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCeEEEEEcCC-----cEEEEEccCC
Q 005459 309 PVSCIAWTPDNSAFAVGWKSR-----GLTVWSVSGC 339 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg-----~v~vW~~~~~ 339 (696)
.+..+.|||||++||-+-..+ .+++-|+.++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg 163 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG 163 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC
Confidence 467789999999998764433 3555555544
No 421
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.51 E-value=12 Score=40.43 Aligned_cols=77 Identities=10% Similarity=0.165 Sum_probs=48.1
Q ss_pred EEEEeCCcEEEEEccCeEEEeecCC---------ceeeEEEeecCh--HHH---hhcccccEEEEcCCC---cEEEEEec
Q 005459 25 IYFKVNNGLLLIASPCHIELWSSSQ---------HKVRLGKYKRDS--ESV---QREGENLQAVWSPDT---KLIAVVTS 87 (696)
Q Consensus 25 v~fs~dg~lla~~~~~~v~iW~~~~---------~~~~l~~~~r~~--~sl---~~~G~~~~v~wsPDg---~~lav~t~ 87 (696)
|..|+.|.++|-++.+.|.|-..-+ .+.+...++... ..+ ..+=+...++|.||+ +.|.+.++
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~s 188 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTS 188 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEec
Confidence 4578889999888877777765510 011111111100 000 012245679999998 78999999
Q ss_pred CcEEEEEEEEecCc
Q 005459 88 SLYLHIFKVQITEK 101 (696)
Q Consensus 88 dg~l~l~~l~~~~~ 101 (696)
|+.+|+|++.....
T Consensus 189 dnviRiy~lS~~te 202 (741)
T KOG4460|consen 189 DNVIRIYSLSEPTE 202 (741)
T ss_pred CcEEEEEecCCcch
Confidence 99999999975543
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=75.04 E-value=1.2e+02 Score=32.29 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=17.1
Q ss_pred ccEEEEccCCEEEE-EEcCceEEEEEEEEe
Q 005459 545 KPIVMDVYEDYILV-TYRPFDVHIFHVKLF 573 (696)
Q Consensus 545 ~~l~~~~~~~~llv-~~~d~~~~l~~~~~~ 573 (696)
|-..++|+++.+|. ....+...||-+++.
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 44788999998887 445678888888863
No 423
>PHA03098 kelch-like protein; Provisional
Probab=73.67 E-value=99 Score=34.83 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCCCEEEEEeCC-----ccE-EEEccCCceEecCC
Q 005459 462 KDGMFLAVAGLH-----GLI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 462 ~dG~~la~ag~d-----G~i-~w~~~sg~w~~f~~ 490 (696)
-+|+.++.||.+ ..+ .||..+++|..+..
T Consensus 486 ~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 486 FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 378888888875 467 99999999998754
No 424
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=73.44 E-value=2.1e+02 Score=34.33 Aligned_cols=81 Identities=14% Similarity=0.155 Sum_probs=55.2
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC------CeEEEEEcCCcEE
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN------SAFAVGWKSRGLT 332 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg------~~lasg~~Dg~v~ 332 (696)
.++++++ .+.|+++..+|.+..+..+..+++. .+.... .-+..|.|+++.+++ +.+|.|..|++++
T Consensus 542 Iv~~avn--r~qiVvalSngelvyfe~d~sgql~-E~~er~-----tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vr 613 (1205)
T KOG1898|consen 542 IVKCAVN--RRQIVVALSNGELVYFEGDVSGQLN-EFTERV-----TLSTDVACLAIGQDPEGEKRSRFLALASVDNMVR 613 (1205)
T ss_pred EEEEeec--ceEEEEEccCCeEEEEEeccCccce-eeeeee-----eeceeehhhccCCCCcchhhcceeeeecccccee
Confidence 3445655 3467888888998888776533332 222100 134679999999987 4799999999999
Q ss_pred EEEccCCeeEEEeec
Q 005459 333 VWSVSGCRLMSTIRQ 347 (696)
Q Consensus 333 vW~~~~~~~~~~l~~ 347 (696)
+.++.-..++..|..
T Consensus 614 iisL~p~d~l~~ls~ 628 (1205)
T KOG1898|consen 614 IISLDPSDCLQPLSV 628 (1205)
T ss_pred EEEecCcceEEEccc
Confidence 999976666655543
No 425
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=73.22 E-value=34 Score=38.92 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=64.3
Q ss_pred EEeCCcEEEEeeccCCceeeeeeeccee----cCCCCeEE-EEE--cCCCcEEEEEecCCeEEEEEccCC-----C---c
Q 005459 226 LYSNGQLMSCSVSKKGLKLAEFIKIDKE----LGSGDAVC-ASI--APEQQILAVGTRRGVVELYDLAES-----A---S 290 (696)
Q Consensus 226 ~s~dG~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~v~-v~~--sp~~~~la~g~~dg~v~vw~~~~~-----~---~ 290 (696)
.++-+++.++..+..++.+||...+... ....+.|. +.| .|+++.+.+-+-...|.+|.-..+ + .
T Consensus 37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~ 116 (631)
T PF12234_consen 37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWA 116 (631)
T ss_pred ecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccc
Confidence 4556666666566667889998765321 12345555 666 467877776677788888864211 1 2
Q ss_pred eeeEEeeccCCCCCCCC-CCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 291 LIRTVSLYDWGYSMDDT-GPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~-g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
.++.+...+ |+ .+|.+..|-+||..++.++ +.+.|+|-
T Consensus 117 ~i~~i~i~~------~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 117 PIRKIDISS------HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred eeEEEEeec------CCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 334333322 44 5799999999998776554 46777764
No 426
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=72.90 E-value=92 Score=35.48 Aligned_cols=70 Identities=23% Similarity=0.291 Sum_probs=45.0
Q ss_pred EEcCCCCEEEEEeCCc-----cE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCC-CeEEEEEeeCC
Q 005459 459 AASKDGMFLAVAGLHG-----LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSS-NTYELLFYPRY 529 (696)
Q Consensus 459 a~s~dG~~la~ag~dG-----~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~-~~~~lr~y~~~ 529 (696)
.-.-+|...|+||.|| .+ .||..+.+|........ ....+....+.+.+-++++..... --..+..|+..
T Consensus 376 v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 376 VAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred eEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCC
Confidence 3445899999999997 57 99999999998765433 222233344555555666544333 23567777764
No 427
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=72.15 E-value=21 Score=38.08 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=26.1
Q ss_pred ccccEEEEcCCCcEEEEEecCcEEEEEEEEecC
Q 005459 68 GENLQAVWSPDTKLIAVVTSSLYLHIFKVQITE 100 (696)
Q Consensus 68 G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~~ 100 (696)
..+..+...|||+.+-+-+. ..+.+|++....
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~ 252 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRS 252 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccc
Confidence 34567899999999999887 689999997544
No 428
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.15 E-value=24 Score=38.39 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=71.6
Q ss_pred CCceeeeeeecce---ecCCCCeEEEEEcCCCcE-------EEEEecCCeEEEEEccCCCc-eeeEEeeccCCCCCCCCC
Q 005459 240 KGLKLAEFIKIDK---ELGSGDAVCASIAPEQQI-------LAVGTRRGVVELYDLAESAS-LIRTVSLYDWGYSMDDTG 308 (696)
Q Consensus 240 ~~~~~~~~~~~~~---~~~~~~~v~v~~sp~~~~-------la~g~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~h~g 308 (696)
..+...|++.++. |..+.+...+.+.|+++. =.+|-.|..|.=||.+-.+. .+..-..+++. ...
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~----~k~ 431 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS----TKN 431 (644)
T ss_pred CcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc----ccc
Confidence 4456667666643 345556333888887542 23577788888888775333 22222332221 223
Q ss_pred CeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEeecccccceecccccCCC
Q 005459 309 PVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQ 362 (696)
Q Consensus 309 ~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~ 362 (696)
.-.|.+-.-+| ++|+|+.+|.||++|-.+.+--..|++.| ..|..+..+.+|
T Consensus 432 nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG-~~I~hVdvtadG 483 (644)
T KOG2395|consen 432 NFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLG-DAIKHVDVTADG 483 (644)
T ss_pred ccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccC-CceeeEEeeccC
Confidence 45666666677 68899999999999986655555566653 346666666665
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.94 E-value=1.9e+02 Score=33.56 Aligned_cols=73 Identities=12% Similarity=0.179 Sum_probs=50.5
Q ss_pred CeEE-EEEc--CCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC-----C-eEEEEEcC
Q 005459 258 DAVC-ASIA--PEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN-----S-AFAVGWKS 328 (696)
Q Consensus 258 ~~v~-v~~s--p~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg-----~-~lasg~~D 328 (696)
.... ++++ ...++||+++....|.||-.....+...... ...|..-|-+|+|-++. . .+++++-.
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~------s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~ 237 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP------SHQHSHNIPNVSFLDDDLDPNGHVKVVATDIS 237 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc------ccccccCCCeeEeecCCCCCccceEEEEEecc
Confidence 3445 9998 8899999999999999987764211111000 11145568889987633 2 78888999
Q ss_pred CcEEEEEc
Q 005459 329 RGLTVWSV 336 (696)
Q Consensus 329 g~v~vW~~ 336 (696)
|.+.+|++
T Consensus 238 G~v~~~~I 245 (717)
T PF08728_consen 238 GEVWTFKI 245 (717)
T ss_pred CcEEEEEE
Confidence 99999887
No 430
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.36 E-value=1.3e+02 Score=31.06 Aligned_cols=118 Identities=11% Similarity=0.177 Sum_probs=56.9
Q ss_pred CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEc
Q 005459 258 DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~ 336 (696)
..+. +..++||+++|++.......-|+-.. ...+.... .....|..|.|+||+...+.+ +.|.++.=+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~--~~w~~~~r-------~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQ--TTWQPHNR-------NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-EEEE---------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCC--ccceEEcc-------CccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 4455 78899999999987666666676432 22222221 146789999999998877755 6566655551
Q ss_pred -cCCeeEEE--eec-ccccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEe
Q 005459 337 -SGCRLMST--IRQ-ISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 337 -~~~~~~~~--l~~-~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (696)
........ ... -..-.+..+++.++. +.++.|. -.++-+.++++-+...
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~----~~wa~gg~G~l~~S~DgGktW~~~ 268 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN----EIWAVGGSGTLLVSTDGGKTWQKD 268 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-----EEEEESTT-EEEESSTTSS-EE-
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC----CEEEEeCCccEEEeCCCCccceEC
Confidence 11111111 000 001125566777665 6666555 3444455556555544
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=70.69 E-value=1.2e+02 Score=33.66 Aligned_cols=28 Identities=25% Similarity=0.604 Sum_probs=22.6
Q ss_pred cCCCCEEEEEeCC-----ccE-EEEccCCceEec
Q 005459 461 SKDGMFLAVAGLH-----GLI-LYDIRQKKWRVF 488 (696)
Q Consensus 461 s~dG~~la~ag~d-----G~i-~w~~~sg~w~~f 488 (696)
--+|+..++||.+ ..+ .||..+++|...
T Consensus 444 v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 444 IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 3588889999865 357 999999999875
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=69.89 E-value=1.1e+02 Score=33.04 Aligned_cols=112 Identities=11% Similarity=0.141 Sum_probs=63.8
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCce-eeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCe
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASL-IRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCR 340 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~ 340 (696)
+..++|++++++|.....++-|+- +.. ...... .....+..+.|.+||..++++ .+|+ .+|+...++
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~---G~~~W~~~~~-------~~~~~l~~v~~~~dg~l~l~g-~~G~-l~~S~d~G~ 311 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEP---GQPYWQPHNR-------ASARRIQNMGWRADGGLWLLT-RGGG-LYVSKGTGL 311 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCC---CCcceEEecC-------CCccceeeeeEcCCCCEEEEe-CCce-EEEecCCCC
Confidence 667889988888765543333432 222 222222 135568999999999988776 4355 466665554
Q ss_pred e-----EEEeecc-cccceecccccCCCCCCccceecce-eeEEEcCCCceEEEEe
Q 005459 341 L-----MSTIRQI-SLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRLYAIE 389 (696)
Q Consensus 341 ~-----~~~l~~~-~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l~~~~ 389 (696)
. ...+... ....+.++.|.+++ +.++.|. -.+....++++-+...
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~----~~~a~G~~G~v~~s~D~G~tW~~~ 363 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK----EAWAAGGSGILLRSTDGGKSWKRD 363 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC----cEEEEECCCcEEEeCCCCcceeEc
Confidence 2 2222211 12246777777776 7777665 2333344555555443
No 433
>PHA02713 hypothetical protein; Provisional
Probab=68.40 E-value=97 Score=35.20 Aligned_cols=66 Identities=15% Similarity=0.146 Sum_probs=37.4
Q ss_pred cCCCcEEEEEecCC------eEEEEEccC-C-CceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCC--cEEEE
Q 005459 265 APEQQILAVGTRRG------VVELYDLAE-S-ASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSR--GLTVW 334 (696)
Q Consensus 265 sp~~~~la~g~~dg------~v~vw~~~~-~-~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg--~v~vW 334 (696)
.-++++.++|+.++ .|..||.++ . -..+..+.. .......+.. +|+..++|+.|+ ++-.+
T Consensus 461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--------~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--------RLSALHTILH--DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--------ccccceeEEE--CCEEEEEeeecceeehhhc
Confidence 34578888887652 467888764 1 122222221 1112222222 889999999888 56666
Q ss_pred EccCCe
Q 005459 335 SVSGCR 340 (696)
Q Consensus 335 ~~~~~~ 340 (696)
|+.+.+
T Consensus 531 d~~~~~ 536 (557)
T PHA02713 531 NVYTYE 536 (557)
T ss_pred Cccccc
Confidence 666554
No 434
>PHA02790 Kelch-like protein; Provisional
Probab=67.76 E-value=1.4e+02 Score=33.29 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=37.8
Q ss_pred EEcCCCCEEEEEeCCccE-EEEccCCceEecCCccceeeeEEEeEee-eCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 459 AASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDITQEQKIQSKGLLW-LGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 459 a~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w-~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+..-+|+..+.|| .. .||..+++|....+....+. .. +++- .+.+-+++++........+..|+.+
T Consensus 403 ~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~-~~-~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 403 ALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRD-NP-ELIIVDNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcc-cc-EEEEECCEEEEECCcCCCcccceEEEEECC
Confidence 3345777777775 46 99999999998765433221 12 3333 4455565654322222345666653
No 435
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=67.09 E-value=91 Score=34.19 Aligned_cols=100 Identities=9% Similarity=0.071 Sum_probs=49.1
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeecc---------eec--CCCCeEEEEEcCCC------cEEEEEe----------c
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKID---------KEL--GSGDAVCASIAPEQ------QILAVGT----------R 276 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~---------~~~--~~~~~v~v~~sp~~------~~la~g~----------~ 276 (696)
+++.|||+++++....+.++.++..... ... +.....-++++|++ ++|-+.. .
T Consensus 35 maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~ 114 (454)
T TIGR03606 35 LLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPN 114 (454)
T ss_pred EEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccC
Confidence 4567788777765545666655432211 011 22333449999997 2333322 1
Q ss_pred CCeEEEEEccCCC-c---eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 277 RGVVELYDLAESA-S---LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 277 dg~v~vw~~~~~~-~---~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
...|.-|.++... . ....+.. .+....|.+ ..|+|.|||++.++-++
T Consensus 115 ~~~I~R~~l~~~~~~l~~~~~Il~~--lP~~~~H~G--grI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 115 HTKIVRYTYDKSTQTLEKPVDLLAG--LPAGNDHNG--GRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CcEEEEEEecCCCCccccceEEEec--CCCCCCcCC--ceEEECCCCcEEEEECC
Confidence 2234445543211 1 1111221 222234654 46779999987766554
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.76 E-value=31 Score=33.80 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=48.2
Q ss_pred EcCCCcEEEEEecCCeEEEEEccCCCcee-eEEeeccCCCC-----CCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEcc
Q 005459 264 IAPEQQILAVGTRRGVVELYDLAESASLI-RTVSLYDWGYS-----MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVS 337 (696)
Q Consensus 264 ~sp~~~~la~g~~dg~v~vw~~~~~~~~~-~~~~~~~~~~~-----~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~ 337 (696)
+..++++|.+-+.+|.+++||+.+ .+.+ +.......-.. ......|..+..+.+|.-|++-+. |....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~-~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKK-GKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCC-CeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 445677788889999999999987 3322 11111000000 025567899999999988877654 778888865
Q ss_pred CC
Q 005459 338 GC 339 (696)
Q Consensus 338 ~~ 339 (696)
=+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 44
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=64.48 E-value=28 Score=37.63 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=52.0
Q ss_pred eEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEEC-------------CC-CCeEE-
Q 005459 259 AVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWT-------------PD-NSAFA- 323 (696)
Q Consensus 259 ~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~s-------------pd-g~~la- 323 (696)
..++..+|++++.|+...=|.|.|+|+.. +..++.+++..- ++-+.+....-. +. ..+|+
T Consensus 310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd----Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 310 GESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD----AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc----ceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34589999999999987779999999988 777777777321 111111110000 00 11222
Q ss_pred EEEcCCcEEEEEccCCeeEEEee
Q 005459 324 VGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 324 sg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
=+-..|.|-||++..+..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 24456889999998887666554
No 438
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=63.55 E-value=69 Score=36.84 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=26.6
Q ss_pred cccEEEEcCCCcEEEEEecCcEEEEEEEEec
Q 005459 69 ENLQAVWSPDTKLIAVVTSSLYLHIFKVQIT 99 (696)
Q Consensus 69 ~~~~v~wsPDg~~lav~t~dg~l~l~~l~~~ 99 (696)
.+++.+||-|.+.+++.|++..|.+++-.+.
T Consensus 114 GIvaa~wS~DE~~~cvvt~~r~il~~~k~fd 144 (1243)
T COG5290 114 GIVAASWSADEKTWCVVTSTREILLFDKYFD 144 (1243)
T ss_pred ceEEEeeccCCceEEEEEcCceEEEEecccc
Confidence 4578999999999999999999998876655
No 439
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=62.21 E-value=1.1e+02 Score=33.07 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=79.4
Q ss_pred eeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceEEEEEcC-----CCCEEEEEeCCccEE
Q 005459 403 KCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQHVAASK-----DGMFLAVAGLHGLIL 477 (696)
Q Consensus 403 ~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~~va~s~-----dG~~la~ag~dG~i~ 477 (696)
..++.|+..|.++++....++.+ ..+..- . ..-+.||..++.-+ +...||+=--+.+.+
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~--------~~~lll------E--~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~v 101 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQ--------PEDLLL------E--TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSV 101 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCC--------CccEEE------E--EecCCcEEEEEeccccCCCCcceEEEecCCEEEE
Confidence 45677788888877766333211 000000 0 01234666665432 445788877777668
Q ss_pred EEccCC--c------eEecCCccceeeeE--EEeEeee-------CcEEEEEEeecCCCeEEEEEeeCCCCCccceeEEe
Q 005459 478 YDIRQK--K------WRVFGDITQEQKIQ--SKGLLWL-------GKIIVVCNYIDSSNTYELLFYPRYHLDQSSLLCRK 540 (696)
Q Consensus 478 w~~~sg--~------w~~f~~~~~e~~~~--v~~~~w~-------~~~lv~~~~~~~~~~~~lr~y~~~~l~~~~~~~~~ 540 (696)
|.+... . +++ +..-|+.+. .-.|++- .+.+.+= +-+..|.||..+...-...+-..
T Consensus 102 Y~v~~~~g~~~~g~~~~L--~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQ-----S~DG~L~~feqe~~~f~~~lp~~ 174 (418)
T PF14727_consen 102 YSVSLVDGTVEHGNQYQL--ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQ-----SMDGSLSFFEQESFAFSRFLPDF 174 (418)
T ss_pred EEEEecCCCcccCcEEEE--EEEEEEecccceeEEEEEECCCCCCceEEEEE-----ecCceEEEEeCCcEEEEEEcCCC
Confidence 887321 1 221 011122222 1134432 2444432 45578999988733222222233
Q ss_pred ecCCccEEEEccCCEEEEEEcCceEEEEEEE
Q 005459 541 SLLAKPIVMDVYEDYILVTYRPFDVHIFHVK 571 (696)
Q Consensus 541 ~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~ 571 (696)
-+|+ |+...+.-|.+++++.+..+.-|++.
T Consensus 175 llPg-Pl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 175 LLPG-PLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCc-CeEEeecCCEEEEecCceeEEEecHH
Confidence 3566 79999999999998888889889874
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.21 E-value=47 Score=32.53 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=45.3
Q ss_pred ceEEEEEeCCcEEEEE-ccCeEEEeecCCceeeEEEeec-ChHHHh---------hcccccEEEEcCCCcEEEEEecCcE
Q 005459 22 QQIIYFKVNNGLLLIA-SPCHIELWSSSQHKVRLGKYKR-DSESVQ---------REGENLQAVWSPDTKLIAVVTSSLY 90 (696)
Q Consensus 22 ~~~v~fs~dg~lla~~-~~~~v~iW~~~~~~~~l~~~~r-~~~sl~---------~~G~~~~v~wsPDg~~lav~t~dg~ 90 (696)
.+++.+..+|.+|.++ .++.+++||+.+.... +.. +...+- ....+..+..+.+|.-|++-+ +|.
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~---~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~ 88 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAV---LPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD 88 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeec---cCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence 4566788888887766 5789999999632221 111 222221 234556788888887766654 566
Q ss_pred EEEEEEE
Q 005459 91 LHIFKVQ 97 (696)
Q Consensus 91 l~l~~l~ 97 (696)
...|+.+
T Consensus 89 ~y~y~~~ 95 (219)
T PF07569_consen 89 SYSYSPD 95 (219)
T ss_pred EEEeccc
Confidence 7777764
No 441
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=58.60 E-value=93 Score=31.75 Aligned_cols=95 Identities=19% Similarity=0.191 Sum_probs=55.6
Q ss_pred ccEEEEccCCceEecCCccceeeeEEEeEeee-CcEEEEEEe-ecCC-CeEEEEEeeCCCCCccceeE--EeecCCccEE
Q 005459 474 GLILYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNY-IDSS-NTYELLFYPRYHLDQSSLLC--RKSLLAKPIV 548 (696)
Q Consensus 474 G~i~w~~~sg~w~~f~~~~~e~~~~v~~~~w~-~~~lv~~~~-~~~~-~~~~lr~y~~~~l~~~~~~~--~~~~~~~~l~ 548 (696)
+..+||..+.+|..+++. -.-.|..|.|. ++.|++++. ...+ ....+..|+.++-.=..+.. ...++.++.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA 93 (281)
T ss_pred EEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence 444999999999998865 23358899996 666666554 2223 46678888765111001111 1346666555
Q ss_pred EEc---cCCEEEE-EE-cCceEEEEEEE
Q 005459 549 MDV---YEDYILV-TY-RPFDVHIFHVK 571 (696)
Q Consensus 549 ~~~---~~~~llv-~~-~d~~~~l~~~~ 571 (696)
+.. +++.+.+ +. .++...|.+++
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc
Confidence 543 4444554 22 56666677663
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=58.27 E-value=34 Score=33.04 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=34.3
Q ss_pred ecCCeEEEEEccC-CCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcC
Q 005459 275 TRRGVVELYDLAE-SASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKS 328 (696)
Q Consensus 275 ~~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~D 328 (696)
...+.|.+|++.. ...+..++.. -+.|..|.++.-|.+|++--++
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~T---------v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFST---------VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcc---------hhheeEEEeccccceEEEEEee
Confidence 6678899999983 2344555554 5889999999999999986543
No 443
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=57.97 E-value=54 Score=32.05 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=39.6
Q ss_pred EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECC
Q 005459 262 ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTP 317 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~sp 317 (696)
+++.-+|++.++....|+|.-.|..+ ++.+.+++. .+..|+|++|--
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~t-GK~L~eikl--------Pt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTT-GKILLEIKL--------PTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCC-CcEEEEEEc--------CCCceEEEEecC
Confidence 33456899999989999999999888 888888988 688899999964
No 444
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=57.70 E-value=3.2e+02 Score=30.77 Aligned_cols=52 Identities=27% Similarity=0.262 Sum_probs=33.0
Q ss_pred CCCcceeEEeecCeeee---cCCCceEEEEEcCCCC---EEEEEeCCccE-EEEccCCce
Q 005459 433 DTDELKILHLNLPVSYI---SQNWPVQHVAASKDGM---FLAVAGLHGLI-LYDIRQKKW 485 (696)
Q Consensus 433 ~~~~~~w~~~~~~~~~~---~~~~~I~~va~s~dG~---~la~ag~dG~i-~w~~~sg~w 485 (696)
++.+.+|+.-.+|...- ....|+. +.+..||+ .|+.+.++|.+ +.|..+|+-
T Consensus 279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l-~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 279 DTGKIKWHYQTTPHDEWDYDGVNEMIL-FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred ccCCEEEeeeCCCCCCccccCCCCcEE-EEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 34456776555554322 2222322 23346887 78899999999 999999973
No 445
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=55.94 E-value=2.1e+02 Score=31.49 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=37.5
Q ss_pred CCeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCC
Q 005459 257 GDAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDN 319 (696)
Q Consensus 257 ~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg 319 (696)
..+..++|.||+++|++--..|.|++++-.+ ..... +....-.....-.+....|+++||-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~-~~~~~-~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPET-GEVKV-VFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCC-Cceee-eecCCceeccCCCCceeeEEECCCc
Confidence 4566699999999888766579999987543 22111 1110000011125778999999984
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.28 E-value=1.3e+02 Score=33.03 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=46.8
Q ss_pred EEEcCCCcEEEEEecCCeEEEEE-----c----cCCCcee---eEEee-ccCCCCCCCCCCeEEEEECCCC---CeEEEE
Q 005459 262 ASIAPEQQILAVGTRRGVVELYD-----L----AESASLI---RTVSL-YDWGYSMDDTGPVSCIAWTPDN---SAFAVG 325 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw~-----~----~~~~~~~---~~~~~-~~~~~~~~h~g~V~~l~~spdg---~~lasg 325 (696)
+..|+.|+.+|..+.+|.+.++= - .+ ++.. +++.. .++..+ ...-.+...+|.|+. ..|..-
T Consensus 109 vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eD-gk~~v~CRt~~i~~~~fts-s~~ltl~Qa~WHP~S~~D~hL~iL 186 (741)
T KOG4460|consen 109 VLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFED-GKSTVNCRTTPVAERFFTS-STSLTLKQAAWHPSSILDPHLVLL 186 (741)
T ss_pred EEecCCCceEEEecCCeeEEEEchhhcCccceecC-CCceEEEEeecccceeecc-CCceeeeeccccCCccCCceEEEE
Confidence 66677777777777777665543 1 11 1111 11111 011111 122357889999976 577788
Q ss_pred EcCCcEEEEEccCCeeE
Q 005459 326 WKSRGLTVWSVSGCRLM 342 (696)
Q Consensus 326 ~~Dg~v~vW~~~~~~~~ 342 (696)
..|+++|++|...-+.+
T Consensus 187 ~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 187 TSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ecCcEEEEEecCCcchh
Confidence 88999999998765433
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=53.45 E-value=69 Score=29.96 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=26.8
Q ss_pred CCCeEEEEECCCC------CeEEEEEcCCcEEEEEccCC
Q 005459 307 TGPVSCIAWTPDN------SAFAVGWKSRGLTVWSVSGC 339 (696)
Q Consensus 307 ~g~V~~l~~spdg------~~lasg~~Dg~v~vW~~~~~ 339 (696)
.+.|..++|||-| ..||+-..++.|.||...+.
T Consensus 85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 3479999999944 47888899999999987654
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=53.37 E-value=3.2e+02 Score=29.48 Aligned_cols=146 Identities=14% Similarity=0.051 Sum_probs=70.7
Q ss_pred CCeEEEEECCCCCeEEEEEcCCcE-EEEEccCCeeEEEeecccccceecccccCCCCCCccceecce-eeEEEcCCCceE
Q 005459 308 GPVSCIAWTPDNSAFAVGWKSRGL-TVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSGT-SMMQWDEYGYRL 385 (696)
Q Consensus 308 g~V~~l~~spdg~~lasg~~Dg~v-~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg~-~~~~W~~~~~~l 385 (696)
+....+.-++||.+++.|.. |.+ +-|+-... .-..+.......++++.+.+++ ..++.+. -.+.|..+.++.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg----~l~l~g~~G~l~~S~d~G~~ 312 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSR-GNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADG----GLWLLTRGGGLYVSKGTGLT 312 (398)
T ss_pred cceeeEEEcCCCCEEEEECC-ccEEEecCCCCc-ceEEecCCCccceeeeeEcCCC----CEEEEeCCceEEEecCCCCc
Confidence 44566778899988888776 433 33432211 1111111213457777777776 5555443 444555544432
Q ss_pred E-----EEecCC--cceEEEEec--ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCeeeecCCCceE
Q 005459 386 Y-----AIEEGS--SERVLIFSF--GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPVSYISQNWPVQ 456 (696)
Q Consensus 386 ~-----~~~~~~--~~~v~~~~~--~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~I~ 456 (696)
+ ....-. ...+..+.+ .+.+..++..|.+... ..+. ..|+..+... .-..+++
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s--~D~G-------------~tW~~~~~~~---~~~~~ly 374 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS--TDGG-------------KSWKRDKGAD---NIAANLY 374 (398)
T ss_pred ccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe--CCCC-------------cceeEccccC---CCCccee
Confidence 2 111110 112333333 4445555555544221 1111 1343322111 1124578
Q ss_pred EEEEcCCCCEEEEEeCCccE-EE
Q 005459 457 HVAASKDGMFLAVAGLHGLI-LY 478 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i-~w 478 (696)
.+.|.++++-++ .|.+|.+ .|
T Consensus 375 ~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 375 SVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred EEEEcCCCceEE-EeCCcEEEEe
Confidence 899888766554 5578887 65
No 449
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=50.65 E-value=5.9e+02 Score=31.71 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=18.8
Q ss_pred CCCCCCCeEEEEECCCCCeEEEEE
Q 005459 303 SMDDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 303 ~~~h~g~V~~l~~spdg~~lasg~ 326 (696)
..+|-....++|.+|||...++-.
T Consensus 657 t~A~lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 657 TQAKLNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred hccccCCcceEEECCCCcEEEecC
Confidence 345777889999999999877644
No 450
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=50.60 E-value=5.9e+02 Score=31.71 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=15.4
Q ss_pred cEEEEcCCCcEEEEEecCcEE
Q 005459 71 LQAVWSPDTKLIAVVTSSLYL 91 (696)
Q Consensus 71 ~~v~wsPDg~~lav~t~dg~l 91 (696)
.+++++|||...++-|....|
T Consensus 596 r~Iavg~~G~lyvaEsD~rri 616 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRI 616 (1899)
T ss_pred hceeecCCceEEEEeccchhh
Confidence 589999999887776644433
No 451
>PF13964 Kelch_6: Kelch motif
Probab=50.38 E-value=20 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.367 Sum_probs=24.6
Q ss_pred EEcCCCCEEEEEeCCc------cE-EEEccCCceEecCC
Q 005459 459 AASKDGMFLAVAGLHG------LI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 459 a~s~dG~~la~ag~dG------~i-~w~~~sg~w~~f~~ 490 (696)
+..-+++..+.||.++ .+ +||.++++|+...+
T Consensus 7 ~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~ 45 (50)
T PF13964_consen 7 AVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP 45 (50)
T ss_pred EEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC
Confidence 4456778888888766 45 99999999998653
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.94 E-value=49 Score=22.04 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=23.2
Q ss_pred CCCCeEEEE-EcCCcEEEEEccCCeeEEEeec
Q 005459 317 PDNSAFAVG-WKSRGLTVWSVSGCRLMSTIRQ 347 (696)
Q Consensus 317 pdg~~lasg-~~Dg~v~vW~~~~~~~~~~l~~ 347 (696)
|||+.|.++ ..++.|.++|..+++.+..+.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 678866665 4578999999988877766553
No 453
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=47.29 E-value=8.2 Score=42.75 Aligned_cols=106 Identities=8% Similarity=0.204 Sum_probs=66.1
Q ss_pred EeCCcEEEEeeccCCceeeeeeecce--ecCCCCeEE-EEEcC-CCcEEEEEecCCeEEEEEc-cCCCceeeEEeeccCC
Q 005459 227 YSNGQLMSCSVSKKGLKLAEFIKIDK--ELGSGDAVC-ASIAP-EQQILAVGTRRGVVELYDL-AESASLIRTVSLYDWG 301 (696)
Q Consensus 227 s~dG~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~v~-v~~sp-~~~~la~g~~dg~v~vw~~-~~~~~~~~~~~~~~~~ 301 (696)
..|.++++++...+.+.+.|...... -.-.+..+. +.+.| .+.++++-. ||.|.+||. ..-..+++.+...+-
T Consensus 163 lrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N- 240 (783)
T KOG1008|consen 163 LRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNEN- 240 (783)
T ss_pred ccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCC-
Confidence 37788888888887788777663211 011233455 77888 788888765 999999993 221222222222000
Q ss_pred CCCCCCCCeEEEEECCCC-CeEEEEEcC-CcEEEEEcc
Q 005459 302 YSMDDTGPVSCIAWTPDN-SAFAVGWKS-RGLTVWSVS 337 (696)
Q Consensus 302 ~~~~h~g~V~~l~~spdg-~~lasg~~D-g~v~vW~~~ 337 (696)
.....+..++|+|-- ..|++...| ++|+++++.
T Consensus 241 ---~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 241 ---KKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ---CcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 012359999999943 356666665 789999874
No 454
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.82 E-value=3.5e+02 Score=27.69 Aligned_cols=75 Identities=7% Similarity=0.040 Sum_probs=49.8
Q ss_pred CCceEEEEEeCCcEEEEEccC-eEEEeecCCceeeEEEeecChHHHhhcccccEEEEcCCCcEEEEEecCcEEEEEEEEe
Q 005459 20 SSQQIIYFKVNNGLLLIASPC-HIELWSSSQHKVRLGKYKRDSESVQREGENLQAVWSPDTKLIAVVTSSLYLHIFKVQI 98 (696)
Q Consensus 20 ~~~~~v~fs~dg~lla~~~~~-~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~~~v~wsPDg~~lav~t~dg~l~l~~l~~ 98 (696)
+..+.+.++|+.+.|.++++. .--||-. +.+..+.... +.....--.+++.-++++.++--.++.+.++.++.
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiP-----L~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIP-----LTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEec-----ccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 446678999998866666544 4445544 3444433321 23344445789999999988888888899988875
Q ss_pred cC
Q 005459 99 TE 100 (696)
Q Consensus 99 ~~ 100 (696)
+.
T Consensus 160 ~t 161 (316)
T COG3204 160 DT 161 (316)
T ss_pred Cc
Confidence 53
No 455
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=45.72 E-value=27 Score=24.53 Aligned_cols=28 Identities=18% Similarity=0.458 Sum_probs=18.7
Q ss_pred cCCCCEEEEEeCCc------cE-EEEccCCceEec
Q 005459 461 SKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (696)
Q Consensus 461 s~dG~~la~ag~dG------~i-~w~~~sg~w~~f 488 (696)
..+++.++.||.+. .+ +||+.+++|...
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 36678888888765 45 899999999875
No 456
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=45.02 E-value=94 Score=35.17 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=27.4
Q ss_pred EEEcC----CCcEEEEEecCCeEEEEEccCCCceeeEEee
Q 005459 262 ASIAP----EQQILAVGTRRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 262 v~~sp----~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
+++++ +..+|++-+.|+++|+||+.+ +.++++...
T Consensus 220 ~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t-~~~~~~~~~ 258 (547)
T PF11715_consen 220 LAVSSSEINDDTFLFTLSRDHTLRIWSLET-GQCLATIDL 258 (547)
T ss_dssp EEE-----ETTTEEEEEETTSEEEEEETTT-TCEEEEEET
T ss_pred EEEecceeCCCCEEEEEeCCCeEEEEECCC-CeEEEEecc
Confidence 66666 778999999999999999998 777665544
No 457
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=44.55 E-value=92 Score=20.65 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred CCCcEEEEEe-cCCeEEEEEccCCCceeeEEee
Q 005459 266 PEQQILAVGT-RRGVVELYDLAESASLIRTVSL 297 (696)
Q Consensus 266 p~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~ 297 (696)
|+++.|.++. .+++|.++|..+ ...+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 5666555544 578999999876 555555554
No 458
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=44.22 E-value=37 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.496 Sum_probs=24.2
Q ss_pred EEEcCCCCEEEEEeCCc------cE-EEEccCCceEec
Q 005459 458 VAASKDGMFLAVAGLHG------LI-LYDIRQKKWRVF 488 (696)
Q Consensus 458 va~s~dG~~la~ag~dG------~i-~w~~~sg~w~~f 488 (696)
.+..-+++..++||.++ .+ .||..+++|+.+
T Consensus 6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 34556778888888876 56 999999999864
No 459
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=42.97 E-value=1.5e+02 Score=35.26 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=59.3
Q ss_pred EEEcC-CCcEEEEEecCCeEEEEEccCC-CceeeEE--eeccCCCC---CCCCCCeEEEEECCCCCeEEEEEcCCcEEEE
Q 005459 262 ASIAP-EQQILAVGTRRGVVELYDLAES-ASLIRTV--SLYDWGYS---MDDTGPVSCIAWTPDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 262 v~~sp-~~~~la~g~~dg~v~vw~~~~~-~~~~~~~--~~~~~~~~---~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW 334 (696)
++||| +.+.||+-...|...||++... ......+ .....+.. .+....-..+.|.++-+.|+++.. ..+.+.
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEE
Confidence 99999 5679999999999999999220 1111111 11111111 112234457899999999998887 788999
Q ss_pred EccCCeeEEEeec-ccccceecccccCC
Q 005459 335 SVSGCRLMSTIRQ-ISLSSISSPIVKPN 361 (696)
Q Consensus 335 ~~~~~~~~~~l~~-~~~~~v~~~~~sp~ 361 (696)
|+.+......+.. ...+.+..+.-+|.
T Consensus 230 d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 230 DFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ECCCCCccchhccCCChhheeeEEecCC
Confidence 9987754221221 11234555554454
No 460
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.76 E-value=7.3e+02 Score=30.51 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCcEEEEEccCCee
Q 005459 316 TPDNSAFAVGWKSRGLTVWSVSGCRL 341 (696)
Q Consensus 316 spdg~~lasg~~Dg~v~vW~~~~~~~ 341 (696)
+++|..++++..||.+..||+..+++
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 89999999999999999999998876
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=40.51 E-value=4.5e+02 Score=27.49 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCEEEEEeCCccEEEEccCC-ceEec
Q 005459 453 WPVQHVAASKDGMFLAVAGLHGLILYDIRQK-KWRVF 488 (696)
Q Consensus 453 ~~I~~va~s~dG~~la~ag~dG~i~w~~~sg-~w~~f 488 (696)
..+..+++.++++.+ ++|.+|.++.....| .|+..
T Consensus 260 ~~l~~v~~~~~~~~~-~~G~~G~v~~S~d~G~tW~~~ 295 (334)
T PRK13684 260 YGYLDLAYRTPGEIW-AGGGNGTLLVSKDGGKTWEKD 295 (334)
T ss_pred cceeeEEEcCCCCEE-EEcCCCeEEEeCCCCCCCeEC
Confidence 457889999988755 466788886666554 47654
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=40.19 E-value=4.5e+02 Score=27.37 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=18.9
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCC
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGLH 473 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~d 473 (696)
..|.-+..++++|||+.|.++-+.
T Consensus 144 ~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 144 RNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred cCCCCeEEEEECCCCCEEEEEECc
Confidence 457789999999999976666543
No 463
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=39.99 E-value=1.1e+02 Score=32.97 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=33.7
Q ss_pred EE-EEEcCCCcEEEEEe-cCCeEEEEEccCCCceeeEEeec---cC-----CCCC--CCCCCeEEEEECCCCCeEEEEE
Q 005459 260 VC-ASIAPEQQILAVGT-RRGVVELYDLAESASLIRTVSLY---DW-----GYSM--DDTGPVSCIAWTPDNSAFAVGW 326 (696)
Q Consensus 260 v~-v~~sp~~~~la~g~-~dg~v~vw~~~~~~~~~~~~~~~---~~-----~~~~--~h~g~V~~l~~spdg~~lasg~ 326 (696)
+. +.+|.|.++|-+.+ .+|.||.||+.+...+..+-+.. .. +... .-.|...-|..|-||++|....
T Consensus 314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 45 89999999887765 58999999999854433222110 00 0000 1134457788899999887654
No 464
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=39.12 E-value=2.8e+02 Score=24.73 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=38.0
Q ss_pred eeecCCCceEEEEEcC-----CCCEEEEEeCCccEEEEccCCceEecCCcccee--eeEEEeEeeeCcEEEE
Q 005459 447 SYISQNWPVQHVAASK-----DGMFLAVAGLHGLILYDIRQKKWRVFGDITQEQ--KIQSKGLLWLGKIIVV 511 (696)
Q Consensus 447 ~~~~~~~~I~~va~s~-----dG~~la~ag~dG~i~w~~~sg~w~~f~~~~~e~--~~~v~~~~w~~~~lv~ 511 (696)
.++.-+..|++++--+ +...|.+|+...+..||+.... .+|-.+.++. .+.+..+.+...-++.
T Consensus 42 ~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~-d~Fyke~~DGvn~i~~g~~~~~~~~l~i 112 (136)
T PF14781_consen 42 SFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNS-DLFYKEVPDGVNAIVIGKLGDIPSPLVI 112 (136)
T ss_pred eEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCc-hhhhhhCccceeEEEEEecCCCCCcEEE
Confidence 4555566788776544 3457888888888899998764 4554444433 2223345554443433
No 465
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=38.60 E-value=31 Score=27.97 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=26.9
Q ss_pred EEEEcCCCCEEEEEeCCccEEEEccCCceEec
Q 005459 457 HVAASKDGMFLAVAGLHGLILYDIRQKKWRVF 488 (696)
Q Consensus 457 ~va~s~dG~~la~ag~dG~i~w~~~sg~w~~f 488 (696)
++..+-.|+-+|+||.+|-.+|-+.|++-+.+
T Consensus 2 ~v~~~~~g~~lAiGG~~g~~~Wfvtt~~v~~~ 33 (86)
T PF11090_consen 2 CVTIEHKGRPLAIGGNNGGCLWFVTTNKVKSL 33 (86)
T ss_pred eEEEecCCeEEEEccccCCeEEEEECcHHhhc
Confidence 56788899999999999988999998875533
No 466
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=38.31 E-value=6e+02 Score=28.24 Aligned_cols=76 Identities=11% Similarity=-0.028 Sum_probs=42.0
Q ss_pred CcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeE--EEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEe
Q 005459 268 QQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVS--CIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTI 345 (696)
Q Consensus 268 ~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~--~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l 345 (696)
+..+.+++.+|.+.-.|..+ ++.+-....... .. .+...+. .++.. ++..++.+..|+.|.-.|..+++.+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-G~~~W~~~~~~~-~~-~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-GKVLWRYDPKLP-AD-RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-ChhhceeCCCCC-cc-ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 33455667778888888776 443322222100 00 0000110 01111 3256777888899999999999888776
Q ss_pred ec
Q 005459 346 RQ 347 (696)
Q Consensus 346 ~~ 347 (696)
.-
T Consensus 137 ~~ 138 (488)
T cd00216 137 GN 138 (488)
T ss_pred cC
Confidence 54
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=37.13 E-value=4.6e+02 Score=26.60 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=114.5
Q ss_pred EEEEeCCcEEEEeeccCCceeeeeeeccee---cCCCCeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeecc
Q 005459 224 FVLYSNGQLMSCSVSKKGLKLAEFIKIDKE---LGSGDAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYD 299 (696)
Q Consensus 224 ~~~s~dG~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~ 299 (696)
++..+||.+.++....+.+--.|..+++.. .+....=. +.+-|||..-++=+.. .|.=.|-++ . ...++..
T Consensus 67 vapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt-~-evt~f~l-- 141 (353)
T COG4257 67 VAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT-L-EVTRFPL-- 141 (353)
T ss_pred cccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc-c-ceEEeec--
Confidence 345677777776655555555555555432 22222222 6677887766553333 233233222 1 1222221
Q ss_pred CCCCCCC-CCCeEEEEECCCCCeEEEEEc---------CCcEEEEEccCCeeEEEeecccccceecccccCCCCCCccce
Q 005459 300 WGYSMDD-TGPVSCIAWTPDNSAFAVGWK---------SRGLTVWSVSGCRLMSTIRQISLSSISSPIVKPNQDCKYEPL 369 (696)
Q Consensus 300 ~~~~~~h-~g~V~~l~~spdg~~lasg~~---------Dg~v~vW~~~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l 369 (696)
..+| .+......|.++|+.-+++.. .+.|++|....+. .-+.+...|++ +.+
T Consensus 142 ---p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-----------gpyGi~atpdG----svw 203 (353)
T COG4257 142 ---PLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-----------GPYGICATPDG----SVW 203 (353)
T ss_pred ---ccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-----------CCcceEECCCC----cEE
Confidence 1123 355788899999999998853 1345555554221 12334445555 333
Q ss_pred ecceeeEEEcCCCceEEE--EecCCcceEEEEec-ceeeeeccCCCCceeeeeeecCCeEEEEecCCCCcceeEEeecCe
Q 005459 370 MSGTSMMQWDEYGYRLYA--IEEGSSERVLIFSF-GKCCLNRGVSGMTYARQVIYGEDRLLVVQSEDTDELKILHLNLPV 446 (696)
Q Consensus 370 ~sg~~~~~W~~~~~~l~~--~~~~~~~~v~~~~~-~~~~~s~~~d~~~~~w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 446 (696)
.+.- .+.-+.. ...+|.+.+.+-.. .+-.-....|..-++|....+..+++.+.... ..|....+|.
T Consensus 204 yasl-------agnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~---~sW~eypLPg 273 (353)
T COG4257 204 YASL-------AGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSV---TSWIEYPLPG 273 (353)
T ss_pred EEec-------cccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccc---ccceeeeCCC
Confidence 3210 1111111 11233322221111 11112233455556777777776665554433 3477766664
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCCceEecCCcc
Q 005459 447 SYISQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQKKWRVFGDIT 492 (696)
Q Consensus 447 ~~~~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg~w~~f~~~~ 492 (696)
. +-.-.++-++..|+.-.+=-..|.+ -+|.++.+..+|....
T Consensus 274 s----~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr 316 (353)
T COG4257 274 S----KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPR 316 (353)
T ss_pred C----CCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCCC
Confidence 2 2233455666666654444445666 8888888877765433
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=34.84 E-value=83 Score=34.36 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=44.9
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccC
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSG 338 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~ 338 (696)
...+||+|+.-|.||+||--. ......+.+ -..+|..+..+.+|+.+.+.+. ..+-+-|+..
T Consensus 572 esGyIa~as~kGDirLyDRig-~rAKtalP~--------lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIG-KRAKTALPG--------LGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhc-chhhhcCcc--------cccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 456899999999999999543 222222333 4567999999999998887776 5777777653
No 469
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=34.32 E-value=58 Score=22.95 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=24.5
Q ss_pred EEEEcCCCCEEEEEeC---C-----ccE-EEEccCCceEec
Q 005459 457 HVAASKDGMFLAVAGL---H-----GLI-LYDIRQKKWRVF 488 (696)
Q Consensus 457 ~va~s~dG~~la~ag~---d-----G~i-~w~~~sg~w~~f 488 (696)
+.+..++++.++.||. + ..+ +||.++.+|+..
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~ 45 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL 45 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence 3556779999999998 2 245 889999999864
No 470
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.08 E-value=6 Score=42.43 Aligned_cols=141 Identities=18% Similarity=0.203 Sum_probs=81.0
Q ss_pred CeEEEEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEE-EcCCcEEEEEc
Q 005459 258 DAVCASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVG-WKSRGLTVWSV 336 (696)
Q Consensus 258 ~~v~v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg-~~Dg~v~vW~~ 336 (696)
.++...|-|.+.-+|++|.+-.+..||-. ++..-.+. .++....|+|.-+|..++.. -..+.+.+|++
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~a--gq~~le~n---------~tg~aldm~wDkegdvlavlAek~~piylwd~ 104 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKA--GQVILELN---------PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDV 104 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhh--cceecccC---------CchhHhhhhhccccchhhhhhhcCCCeeechh
Confidence 45667788887779999999999999854 34433333 47788899999998877654 45588999999
Q ss_pred cCCeeEEEeecccccceecccccCCCCCCccceecc---eeeEEEcCCCceEEEEecCCcceEEEEec--ceeeeeccCC
Q 005459 337 SGCRLMSTIRQISLSSISSPIVKPNQDCKYEPLMSG---TSMMQWDEYGYRLYAIEEGSSERVLIFSF--GKCCLNRGVS 411 (696)
Q Consensus 337 ~~~~~~~~l~~~~~~~v~~~~~sp~~~~~~~~l~sg---~~~~~W~~~~~~l~~~~~~~~~~v~~~~~--~~~~~s~~~d 411 (696)
.... ..++...+.+.-+-..+++.. ..++-| ..+.+...+..+.......|..++.++.. ....+.++.|
T Consensus 105 n~ey-tqqLE~gg~~s~sll~wsKg~----~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd 179 (615)
T KOG2247|consen 105 NSEY-TQQLESGGTSSKSLLAWSKGT----PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCD 179 (615)
T ss_pred hhhh-HHHHhccCcchHHHHhhccCC----ccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcH
Confidence 6542 222222222222334455443 111111 14445554444444444336666644433 4445555544
Q ss_pred CCc
Q 005459 412 GMT 414 (696)
Q Consensus 412 ~~~ 414 (696)
.++
T Consensus 180 ~~L 182 (615)
T KOG2247|consen 180 NTL 182 (615)
T ss_pred HHH
Confidence 433
No 471
>PHA03098 kelch-like protein; Provisional
Probab=33.09 E-value=7.4e+02 Score=27.75 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=38.1
Q ss_pred EEcCCCCEEEEEeCCc--------cE-EEEccCCceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEeeCC
Q 005459 459 AASKDGMFLAVAGLHG--------LI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFYPRY 529 (696)
Q Consensus 459 a~s~dG~~la~ag~dG--------~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y~~~ 529 (696)
+..-+++..+.||.++ .+ .||..+++|.........+ .........+.+.+.++.........+..|+.+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeCC
Confidence 3445778888887642 26 9999999999865432221 111122223444455543322223456667653
No 472
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.04 E-value=4.1e+02 Score=32.84 Aligned_cols=112 Identities=22% Similarity=0.411 Sum_probs=59.8
Q ss_pred EEccCeEEEeecCCceeeEEEeecChHHHhhcccc--cEEEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCc
Q 005459 36 IASPCHIELWSSSQHKVRLGKYKRDSESVQREGEN--LQAVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGL 113 (696)
Q Consensus 36 ~~~~~~v~iW~~~~~~~~l~~~~r~~~sl~~~G~~--~~v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~ 113 (696)
..-|+.+.||+.++ ......+....+.+-.-|=+ ..=.|-|+=+++.+.++--.|.++-+......... ..
T Consensus 95 iTiDn~L~lWny~~-~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~------~~ 167 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYES-DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL------SI 167 (1311)
T ss_pred EEeCCeEEEEEcCC-CCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc------cc
Confidence 34578899999974 33333333222221110000 00124455566666666667888888765421100 00
Q ss_pred eeeeeeEEEeeeccccccceeEEEee-eCCCeEEEEecCCcEEEEecCCc
Q 005459 114 FFIKISLVLNEQLPFAEKGLSVSNIV-SDNKHMLLGLSDGSLYSISWKGE 162 (696)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~~~v~~~~-~~~~~llv~t~~g~i~~~~w~~~ 162 (696)
... ... +..+...|+|+. .++.+++.++.||.++.+....+
T Consensus 168 f~~------~~~--i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~ 209 (1311)
T KOG1900|consen 168 FNT------SFK--ISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAE 209 (1311)
T ss_pred ccc------cee--eecCCceEEEEEeccCCcEEEeecCCCEEEEEEecc
Confidence 001 111 223345777887 45688999999999887766543
No 473
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=30.46 E-value=7e+02 Score=26.70 Aligned_cols=89 Identities=10% Similarity=0.108 Sum_probs=41.7
Q ss_pred EEeCCcEEEEeec-cCCceee--eeeeccee--cCCC-CeEE-EEEcCCCcEEEEEecCCeEEEEEccCCCceeeEEeec
Q 005459 226 LYSNGQLMSCSVS-KKGLKLA--EFIKIDKE--LGSG-DAVC-ASIAPEQQILAVGTRRGVVELYDLAESASLIRTVSLY 298 (696)
Q Consensus 226 ~s~dG~~~~~~~~-d~~~~~~--~~~~~~~~--~~~~-~~v~-v~~sp~~~~la~g~~dg~v~vw~~~~~~~~~~~~~~~ 298 (696)
+++||+.++..++ ++.-+++ |+.+++.. .... +..- ..++|+.+.+.--..+..++--|+++ .+.......
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~- 120 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV- 120 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE--
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC-
Confidence 5789976655554 4444433 44443322 1111 1111 45678888877655566787778776 443333333
Q ss_pred cCCCCCCCCCCeEEEEEC--CCCCeEE
Q 005459 299 DWGYSMDDTGPVSCIAWT--PDNSAFA 323 (696)
Q Consensus 299 ~~~~~~~h~g~V~~l~~s--pdg~~la 323 (696)
..+-+-...|+ .|+..++
T Consensus 121 -------p~~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 121 -------PDDWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp --------TTEEEEEEEEE-TTSSEEE
T ss_pred -------CcccccccceeeCCCccEEE
Confidence 34555556664 4566554
No 474
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=30.44 E-value=7.5e+02 Score=27.06 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=26.8
Q ss_pred cccceeeeCCCCCCCCCceEEEEEeCCcEEEEE-ccCeEEEeecC
Q 005459 5 YGWPQVIPLEQGLCPSSQQIIYFKVNNGLLLIA-SPCHIELWSSS 48 (696)
Q Consensus 5 ~g~p~~~~~~~~~~~~~~~~v~fs~dg~lla~~-~~~~v~iW~~~ 48 (696)
+=||+..+...- +...++.++.-|.+=+.+ .|+.|+.|=.+
T Consensus 90 ~~~P~~~~~~~~---d~~~i~~~acGg~hsl~ld~Dg~lyswG~N 131 (476)
T COG5184 90 VDRPQLNPFGRI---DKASIIKIACGGNHSLGLDHDGNLYSWGDN 131 (476)
T ss_pred ccCceecCcccc---cceeeEEeecCCceEEeecCCCCEEEeccC
Confidence 457777755532 336677788777654444 67789999665
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.82 E-value=4e+02 Score=26.54 Aligned_cols=120 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEeCCcEEEEee---ccCCceeeeeee---ccee------cCCCCeEE-EEEcCCCcEEEEEecCC-eEEEEEccCCCc
Q 005459 225 VLYSNGQLMSCSV---SKKGLKLAEFIK---IDKE------LGSGDAVC-ASIAPEQQILAVGTRRG-VVELYDLAESAS 290 (696)
Q Consensus 225 ~~s~dG~~~~~~~---~d~~~~~~~~~~---~~~~------~~~~~~v~-v~~sp~~~~la~g~~dg-~v~vw~~~~~~~ 290 (696)
++.+||+++.+++ ....++..+.-. ...| ......-- +..-|||+.|++|+.+. +..+|.-.....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~ 152 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGP 152 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCC
Q ss_pred eeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEcCCcEEEEEccCCeeEEEee
Q 005459 291 LIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWKSRGLTVWSVSGCRLMSTIR 346 (696)
Q Consensus 291 ~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~Dg~v~vW~~~~~~~~~~l~ 346 (696)
....+.............-=-.+-..|||+.++.+.. .-.++|..+...+.++.
T Consensus 153 ~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~--~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 153 GPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR--GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred CceeeecchhhhccCccccCceEEEcCCCCEEEEEcC--CcEEEeCCCCeEEeeCC
No 476
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=29.72 E-value=9.3e+02 Score=27.87 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=27.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCccE-EEEccC
Q 005459 452 NWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQ 482 (696)
Q Consensus 452 ~~~I~~va~s~dG~~la~ag~dG~i-~w~~~s 482 (696)
...|-.+.|.++++.+.+.-+.|.+ +|+...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 4468889999999999999999999 999933
No 477
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=29.53 E-value=1e+03 Score=28.16 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=40.3
Q ss_pred EEEcCCCcEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEe-eeCCCeEEEEecC
Q 005459 73 AVWSPDTKLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNI-VSDNKHMLLGLSD 151 (696)
Q Consensus 73 v~wsPDg~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~-~~~~~~llv~t~~ 151 (696)
-.+-|+-..+++.|.+|+|+--....-.. . .+.+..++.-+..+ +...+.+++.|++
T Consensus 488 ~~~i~~e~v~VilTk~G~IKr~~~~~~~~--------------s--------aikLKegD~L~~~~~~~t~d~LllfTs~ 545 (735)
T TIGR01062 488 IDMIPKEPVTIILSKMGWVRSAKGHDIDL--------------S--------TLKYKAGDSEKAIIEGKSNQKVVFIDST 545 (735)
T ss_pred hhcccCcceEEEEecCCEEEeccccccch--------------h--------ccCcCCCCeEEEEEEecCCCEEEEEECC
Confidence 34568888999999999998666542110 0 01122233333333 3345689999999
Q ss_pred CcEEEEec
Q 005459 152 GSLYSISW 159 (696)
Q Consensus 152 g~i~~~~w 159 (696)
|.++.+.-
T Consensus 546 Gr~yrf~v 553 (735)
T TIGR01062 546 GRSYALDP 553 (735)
T ss_pred CeEEEEEh
Confidence 99988754
No 478
>PLN02153 epithiospecifier protein
Probab=29.32 E-value=6.7e+02 Score=26.11 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=23.3
Q ss_pred EEcCCCCEEEEEeCCc-----------cE-EEEccCCceEecCC
Q 005459 459 AASKDGMFLAVAGLHG-----------LI-LYDIRQKKWRVFGD 490 (696)
Q Consensus 459 a~s~dG~~la~ag~dG-----------~i-~w~~~sg~w~~f~~ 490 (696)
+..-+++..+.||.+. .+ +||..+.+|+....
T Consensus 133 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~ 176 (341)
T PLN02153 133 MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPD 176 (341)
T ss_pred EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCC
Confidence 3445778888888641 46 89999999997543
No 479
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=28.90 E-value=7.8 Score=22.87 Aligned_cols=9 Identities=22% Similarity=0.409 Sum_probs=6.9
Q ss_pred EEEeCCcEE
Q 005459 26 YFKVNNGLL 34 (696)
Q Consensus 26 ~fs~dg~ll 34 (696)
.|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 389999874
No 480
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=28.07 E-value=1.5e+02 Score=18.14 Aligned_cols=22 Identities=9% Similarity=0.312 Sum_probs=12.7
Q ss_pred EEEcCCCcEEEEEecCCeEEEE
Q 005459 262 ASIAPEQQILAVGTRRGVVELY 283 (696)
Q Consensus 262 v~~sp~~~~la~g~~dg~v~vw 283 (696)
++++++|+++++=+.+..|++|
T Consensus 7 vav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEC
Confidence 5555666666665555555543
No 481
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=27.69 E-value=2.2e+02 Score=32.04 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCCCeEEEEECCCCCeEEEE
Q 005459 306 DTGPVSCIAWTPDNSAFAVG 325 (696)
Q Consensus 306 h~g~V~~l~~spdg~~lasg 325 (696)
....++.++|+|||+.|+..
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 35678999999999998864
No 482
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=27.53 E-value=7.2e+02 Score=25.85 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=39.7
Q ss_pred EEEcCCCcEEEEEecC------CeEEEEEccCCCceeeEEeecc-CC------CCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 262 ASIAPEQQILAVGTRR------GVVELYDLAESASLIRTVSLYD-WG------YSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 262 v~~sp~~~~la~g~~d------g~v~vw~~~~~~~~~~~~~~~~-~~------~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
+++.+++.++++-=.+ -.|+-++.+ +..+..+.... +. .........-.|+++|||+.|.++-+
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 6677788777765555 567666654 45544442211 10 11124567899999999997777655
No 483
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=24.93 E-value=1.5e+02 Score=34.49 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=50.1
Q ss_pred cCCCceEEEEEcCCCCEEEEEeCCccE-EEEccCC--ceEecCCccceeeeEEEeEeeeCcEEEEEEeecCCCeEEEEEe
Q 005459 450 SQNWPVQHVAASKDGMFLAVAGLHGLI-LYDIRQK--KWRVFGDITQEQKIQSKGLLWLGKIIVVCNYIDSSNTYELLFY 526 (696)
Q Consensus 450 ~~~~~I~~va~s~dG~~la~ag~dG~i-~w~~~sg--~w~~f~~~~~e~~~~v~~~~w~~~~lv~~~~~~~~~~~~lr~y 526 (696)
....|+++.++..| +..|+.+|.+ +|...+- .|+. ...+|+...|..|...+..+-+|- ....++|++
T Consensus 624 ~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~l--eahqee~~~Vthm~~~~~gVwvaf----asG~~~rlf 694 (925)
T KOG3522|consen 624 TGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDL--EAHQEEAHSVTHMLYLDNGVWVAF----ASGDEERLF 694 (925)
T ss_pred cCCccccchhhhhc---eeeeecCCceEEEechhccccchh--HHHHhhcceEEEEEeeCCceEEEE----cCCCEEEEe
Confidence 34558999999887 6678889999 9988763 3443 234566777889998887776652 233577777
Q ss_pred eCC
Q 005459 527 PRY 529 (696)
Q Consensus 527 ~~~ 529 (696)
..+
T Consensus 695 hte 697 (925)
T KOG3522|consen 695 HTE 697 (925)
T ss_pred ccc
Confidence 666
No 484
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=24.30 E-value=2e+02 Score=23.69 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=25.1
Q ss_pred cCCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEEc
Q 005459 276 RRGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGWK 327 (696)
Q Consensus 276 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~~ 327 (696)
.+|.+.-||..+ ++..-.+.+ -.--+.|+.|||+..++.+-.
T Consensus 35 ~~GRll~ydp~t-~~~~vl~~~---------L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPST-KETTVLLDG---------LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTT-TEEEEEEEE---------ESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCC-CeEEEehhC---------CCccCeEEEcCCCCEEEEEec
Confidence 356677788776 443333333 223578999999998877643
No 485
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=23.76 E-value=1.3e+03 Score=27.58 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=39.5
Q ss_pred EEEEEEccCcceEEEEEeCCcEEEEeeccCCceeeee--eecceecCCCCeEEEEEcCCCcEEEEEecCCeEEEEEccC
Q 005459 211 IIWLELCLPMRLLFVLYSNGQLMSCSVSKKGLKLAEF--IKIDKELGSGDAVCASIAPEQQILAVGTRRGVVELYDLAE 287 (696)
Q Consensus 211 i~~~~~~~~~~~~~~~s~dG~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~v~v~~sp~~~~la~g~~dg~v~vw~~~~ 287 (696)
+..+.........+.++..|+.+.....+-...-+.. ...-.+..-+..+.+..-++...++..+.+|.++...++.
T Consensus 641 lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e 719 (800)
T TIGR01063 641 LISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVVSEESYLLIVTENGYGKRTSIEE 719 (800)
T ss_pred EEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEeccccEEEEEecCCcEEEEEHHH
Confidence 4444334444557788899998876554321111110 0000111222334432223455688888999888887654
No 486
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=22.97 E-value=6.2e+02 Score=26.38 Aligned_cols=40 Identities=15% Similarity=0.332 Sum_probs=22.2
Q ss_pred ccE-EEEccCCceEecCCccceeeeEEEeEeee-CcEEEEEEe
Q 005459 474 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWL-GKIIVVCNY 514 (696)
Q Consensus 474 G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~-~~~lv~~~~ 514 (696)
..+ .||..+++|.......... ..-.+++-. +.+.|.++.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~-r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLG-TAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCc-CCCceEEEECCEEEEEeee
Confidence 357 9999999999865432111 111234444 455555544
No 487
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=22.84 E-value=5.3e+02 Score=24.48 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=45.9
Q ss_pred ccE-EEEccCCceEecCCccceeeeEEEeEeeeCc--EEEEEEe--ecCCCeEEEEEeeCCCCCccceeEE-eecCCccE
Q 005459 474 GLI-LYDIRQKKWRVFGDITQEQKIQSKGLLWLGK--IIVVCNY--IDSSNTYELLFYPRYHLDQSSLLCR-KSLLAKPI 547 (696)
Q Consensus 474 G~i-~w~~~sg~w~~f~~~~~e~~~~v~~~~w~~~--~lv~~~~--~~~~~~~~lr~y~~~~l~~~~~~~~-~~~~~~~l 547 (696)
|-+ ++|..+++|..+.-...++.+....+.|..+ ++|+.++ ..-+..+.|-+|++..-.. ..+.. .+-..+++
T Consensus 88 GkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~-~~ly~~~dkkqQVi 166 (200)
T PF15525_consen 88 GKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNL-TELYEWKDKKQQVI 166 (200)
T ss_pred eeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCeEEEEEccCCce-eEeeeccccceeEE
Confidence 456 8888888886543222233444558999743 4444432 3335667888888751111 11221 12234566
Q ss_pred EEEccCCEEEE
Q 005459 548 VMDVYEDYILV 558 (696)
Q Consensus 548 ~~~~~~~~llv 558 (696)
.+-..++.|..
T Consensus 167 s~e~~gd~L~L 177 (200)
T PF15525_consen 167 SAEKNGDNLNL 177 (200)
T ss_pred EEEEeCCEEEE
Confidence 66666666544
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=22.01 E-value=1.5e+02 Score=24.31 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=31.2
Q ss_pred EEEEEeeCCCCCccceeEEeecCCccEEEEccCCEEEEEEcCceEEEEEEEEec
Q 005459 521 YELLFYPRYHLDQSSLLCRKSLLAKPIVMDVYEDYILVTYRPFDVHIFHVKLFG 574 (696)
Q Consensus 521 ~~lr~y~~~~l~~~~~~~~~~~~~~~l~~~~~~~~llv~~~d~~~~l~~~~~~~ 574 (696)
+.|--|+...-...-++.....|. -++++++++++++ +.....+|.++-++|
T Consensus 37 GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv-~Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 37 GRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLV-AETGRYRILRYWLKG 88 (89)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEE-EEGGGTEEEEEESSS
T ss_pred cCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEE-EeccCceEEEEEEeC
Confidence 444445443111122444555555 5899999999999 445677888877765
No 489
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=21.94 E-value=2e+02 Score=33.45 Aligned_cols=97 Identities=14% Similarity=0.092 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCeEEEEEccCCCceeeEE---------ee-ccCCCCCCCCCCeEEEEEC--CCCCeEEEEEcCCcEEEE
Q 005459 267 EQQILAVGTRRGVVELYDLAESASLIRTV---------SL-YDWGYSMDDTGPVSCIAWT--PDNSAFAVGWKSRGLTVW 334 (696)
Q Consensus 267 ~~~~la~g~~dg~v~vw~~~~~~~~~~~~---------~~-~~~~~~~~h~g~V~~l~~s--pdg~~lasg~~Dg~v~vW 334 (696)
+...|+.++.||.|.+|.++.-.+.+... .. .+..+...-...++.|++. ...+.||+++...+|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 44567788889999999764311000000 00 0000111134578999998 788899999988999998
Q ss_pred EccCC--eeEEEeecccccceecccccCCCC
Q 005459 335 SVSGC--RLMSTIRQISLSSISSPIVKPNQD 363 (696)
Q Consensus 335 ~~~~~--~~~~~l~~~~~~~v~~~~~sp~~~ 363 (696)
-.... +....-...+...|.++.|-++..
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~ 223 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDL 223 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCC
Confidence 65431 111100111245688888877653
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.60 E-value=1.7e+02 Score=29.88 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCeEEEEEccCCCceeeEEeeccCCCCCCCCCCeEEEEECCCCCeEEEEE------cCCcEEEEEccCC
Q 005459 277 RGVVELYDLAESASLIRTVSLYDWGYSMDDTGPVSCIAWTPDNSAFAVGW------KSRGLTVWSVSGC 339 (696)
Q Consensus 277 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~h~g~V~~l~~spdg~~lasg~------~Dg~v~vW~~~~~ 339 (696)
-..|.+||... .+....-.+ -.|.|++|.|..+.+.+++|. ....+..||..+.
T Consensus 15 C~~lC~yd~~~-~qW~~~g~~--------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDN-SQWSSPGNG--------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCC-CEeecCCCC--------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 45688999876 332221122 468899999997777777774 2345666666554
No 491
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=21.57 E-value=1.8e+02 Score=18.00 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.9
Q ss_pred eEEEEEcCCcEEEEEccCCeeEEE
Q 005459 321 AFAVGWKSRGLTVWSVSGCRLMST 344 (696)
Q Consensus 321 ~lasg~~Dg~v~vW~~~~~~~~~~ 344 (696)
.+..+..+|.+...|..+++...+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 466677788999999887766543
No 492
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=21.54 E-value=3.2e+02 Score=27.44 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred cEEEEEecCcEEEEEEEEecCcccccCCCCCCCceeeeeeEEEeeeccccccceeEEEeee-CCCeEEEEecCCcEEEEe
Q 005459 80 KLIAVVTSSLYLHIFKVQITEKSIQIGGKQPSGLFFIKISLVLNEQLPFAEKGLSVSNIVS-DNKHMLLGLSDGSLYSIS 158 (696)
Q Consensus 80 ~~lav~t~dg~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~-~~~~llv~t~~g~i~~~~ 158 (696)
+.|++||.+|.|.|.|.+.-.. ..+..++-..-...++..-- -+.+|++++.||.|+.+.
T Consensus 196 scLViGTE~~~i~iLd~~af~i-------------------l~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ir 256 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTI-------------------LKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTIR 256 (257)
T ss_pred ceEEEEecCCeEEEECchhhee-------------------EEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEEe
No 493
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=21.23 E-value=1.7e+02 Score=23.87 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.3
Q ss_pred cEEEEcCCCcEEEEEec-CcEEEEEEEE
Q 005459 71 LQAVWSPDTKLIAVVTS-SLYLHIFKVQ 97 (696)
Q Consensus 71 ~~v~wsPDg~~lav~t~-dg~l~l~~l~ 97 (696)
..+..+||++.|.+++. .+.|++|+.+
T Consensus 57 NGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 57 NGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 47999999999888764 5789999876
No 494
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=20.74 E-value=1.4e+02 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCEEEEEeC
Q 005459 455 VQHVAASKDGMFLAVAGL 472 (696)
Q Consensus 455 I~~va~s~dG~~la~ag~ 472 (696)
++++++-|||+.|++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYV 20 (55)
T ss_pred eEEEEECCCCcEEEEEEe
Confidence 678999999999998863
Done!